lowQualScore : 111111111111111111111111111111111111111111111111111111111111111111111111111111111111111 2222222222222222222222222222222222222222 222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
lowQualScore : 555555555 55555555 1 33333 1 3333333 222222222 1 111 111 2222222 33 11 11 1 222222 111 4444444444444444444444 1111 555555555555555555555555 2222 111 1 1 5555555555555555 1 1 333333 222 222 1111 222 11 1 333333 11 222 222 1 1 33333 3 111 11 3333 3333 1 1 1 22222 1 666666666666666666666666 1 1 11 222 44444444 111 222 1 2222 1 2 222 1 1 4 1 99999 1 4 8888 1 4 1 1 1 1 1 6666 888888888888888888888888888888888888888888888888888888888888888888888888888888888888888 1 1 22 4444 11 22 1 2 1 22 22 2 2 7777777777777777777777777777777777777777 2 11 1 222 11 111 11 111 555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555 7777777 5555 1 11 1 4444444 1 11 2222 22 222222 4444444444444 1 11 111 1111 1 1 222 3333 11 1 1 1 2 1 4444444444444444444 11 333 1111 222222222222 1 222 1 11 33333 11 11 11 1 111 11 1111 6666 1111 111 2 3333 1 111 111 11111111 333333333333 222222222222 11 22222222 1 2222222 111111 555555555555555555555555555555555555555555 1 2222222 1111 11 11 222222 11 11 33 1 1 333 11 11 11
lowQualScore : 2 88 666666666 55555555 7 00000 0 2222222 2 666666666 0 777 8 4 666 2 3333333 00 11 99 6 8 333333 8 444 0000000000000000000000 7777 8 7 888888888888888888888888 8 1111 0 777 0 0 8 9999999999999999 2 0 1 0 888888 333 777 8888 333 88 3 888888 33 333 7 7 333 3 3 7 7 33333 7 7 1 000 6 88 1111 6 7777 1 3 3 3 6 77 7 99999 3 000000000000000000000000 3 3 88 555 7 44444444 3 999 999 3 8888 0 6 333 4 3 2 3 5 0 5 6 11111 5 0 5555 6 5 0 7 7 7 5 5 2222 2 777777777777777777777777777777777777777777777777777777777777777777777777777777777777777 2 5 5 6 77 2222 22 6 2 77 0 0 5 77 77 0 0 5555555555555555555555555555555555555555 0 00 5 333 99 666 88 55 222 888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888 1111111 7 5555 3 6 66 3 7777777 7 3 6 6 88 7 8888 77 3 9 0 0 888888 6666666666666 3 55 666 6 5555 3 3 6 7 555 6666 88 6 3 3 3 6 0 9 2 0 2222222222222222222 3 00 0 5 4 3 3 888 3333 999999999999 0 4 888 0 33 00000 33 33 44 33 3 0 777 33 9999 1 99 6 6666 6 6 4444 111 6 3 9999 5 0 6 6 6 6 111 000 5 5 5 33333333 222222222222 5 1 5 77 5 5 777777777777 5 00 77 00000000 5 0 1111111 6 3 111111 77 2 777777777777777777777777777777777777777777 6 8 8 9999999 99 9 666 4444 99 6 6 11 1 0 0 55 444444 5 11 99 8 00 8 0 0 0 555 33 22 33 33
lowQualScore : . .. ......... ........ . ..... . ....... . ......... . ... . . ... . ....... .. .. .. . . ...... . ... ...................... .... . . ........................ . .... . ... . . . ................ . . . . ...... ... ... .... ... .. . ...... .. ... . . ... . . . . ..... . . . ... . .. .... . .... . . . . . .. . ..... . ........................ . . .. ... . ........ . ... ... . .... . . ... . . . . . . . . ..... . . .... . . . . . . . . .... . ....................................................................................... . . . . .. .... .. . . .. . . . .. .. . . ........................................ . .. . ... .. ... .. .. ... ................................................................................................... ....... . .... . . .. . ....... . . . . .. . .... .. . . . . ...... ............. . .. ... . .... . . . . ... .... .. . . . . . . . . . ................... . .. . . . . . ... .... ............ . . ... . .. ..... .. .. .. .. . . ... .. .... . .. . .... . . .... ... . . .... . . . . . . ... ... . . . ........ ............ . . . .. . . ............ . .. .. ........ . . ....... . . ...... .. . .......................................... . . . ....... .. . ... .... .. . . .. . . . .. ...... . .. .. . .. . . . . ... .. .. .. ..
lowQualScore : 5 00 000000000 77777777 3 55555 0 5555555 5 888888888 0 888 0 6 888 8 2222222 00 00 00 0 0 000000 0 000 8888888888888888888888 0000 0 0 000000000000000000000000 2 2222 8 555 0 0 8 8888888888888888 5 0 2 0 333333 333 333 3333 333 00 3 333333 77 333 3 3 333 3 7 0 0 33333 3 3 7 333 7 33 0000 7 7777 0 3 3 3 0 77 3 77777 3 777777777777777777777777 3 3 33 777 2 33333333 7 333 000 3 3333 7 7 333 3 3 5 0 0 0 0 0 00000 0 0 0000 0 0 0 0 0 0 0 0 0000 5 000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 5 5 5 0 55 5555 00 0 5 55 5 0 0 55 55 0 0 0000000000000000000000000000000000000000 0 00 0 333 33 777 33 00 333 000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 7777777 3 0000 3 7 33 3 0000000 0 3 7 7 33 3 3333 00 2 8 8 2 333333 3333333333333 3 77 777 0 3333 3 3 7 3 777 0000 33 7 3 3 2 5 0 8 0 0 5555555555555555555 2 55 2 0 2 2 2 888 0000 555555555555 0 0 888 0 88 88888 88 88 88 88 2 0 555 22 2222 0 22 7 8888 7 7 2222 777 7 5 6666 0 2 7 7 7 7 666 000 7 7 7 11111111 000000000000 7 7 7 99 7 7 777777777777 7 00 99 00000000 0 7 7777777 7 5 888888 77 5 333333333333333333333333333333333333333333 0 0 0 0000000 77 3 888 2222 00 7 7 00 0 8 8 66 444444 6 00 00 0 88 0 8 0 0 000 55 55 22 88
consensus : NNNAAGGTAAGGTTTGCGNCATTTCNNTATGTAGCGA-CAAGTCATGTTA----GCAATATGTTCAG----TAGG-AATTTG-------TCTTTTAA---AAATG-G-ACTTT--NAA-AAAAAAT-T-GTCCGT-GTTG-NTTTTTTGACCACATGGG--TTTAA--TTTTGTG-ATGTTT------TGC-GTT---TTCTGGA---A---T--TTTG--CA--ATAAA----GAG-AATACTNG--CTG--------TATA-T---AAAAACTACACA----AAGCAA---ACT-CAC-CGGTTGG-A--------------AAGGAGATAT-AATTTTT-AA------AAGAG---TATAA--TTATTA-AGT---TATGCGAATTG-GTTGA------TGAAATTTGAATTNAAA---ACACAAAAAAT---AGCACTTTT-TNTATCTTTGAT-----AAAATTCAAAGTGGTTGCCATGACAACAAAAAAG-GTATGTTGAACAGCTTTG--TAAGACCTACGTC--ACAAAAAA---CCACTTTTAAC-ATAA-AATTTCGA-TCATAAAGATTNNTAAAAGCA--A-CTAA-AAATAT---TA-C-AA--CCCGGCT----TTGTGTT-TCCATGG-TAACC--ATT--AACATNATTTTT-------GTCGNTGCGTTTTGTCACTAGGTTTT-ATCATT----GTACGACTTTTAATGGGTGTATCG---AATATTTTCAATA-ACAAAATATGACTCCAACCNCGAAATGAAAAACTNGTTATATCTATTTGTC-AATATTGTCAAGTATTGCACTATCCCTCAT----TACCCCCTCCCCTATTTATTTAAACAA-TTTACTATCGAAATATATAGATCATTTAAGCTGACGATCGATGAAGGTAAAATTATTGATTTTTTTTAAAATGATATTAAATTAGTCCGACTTTAGCCACAAAAATATAAGA-ATGAATACNTTTGGNTGTCTACCATCTTACCATAGAAATGTNATATTGTAAGATTAAATCAAGAATTTNTNGCTTANNGATAATTCNTATAAATGGATGAGTGTTATCANCATATATATCGCTACAAAAGTTTCCCCGGCANGTAATTTNCACAGCTCCCAGGTTTCGGTTCGCCAAATTCCTGTGTTCCATCGGCTCGATTGGCTCAAACGTCTTTAACTGTCTTTAGATACCACATTTTGAAATNAATTTCCTCTTTTATTCCATA---GCCT-GATGTTTAT-C-TA--CATGGNAGATAAACGACTATCGCC-----------------TT---CGCAA-----------------TT-TTAGCCCAGTCAGTGACGGCTCAAA---------GGGA--------------GGGGGGGGGGGG-----GTAAAGTTAGTA---AAAT-GACACTTCGTAAATTG-TTTTATGTCCCCAACA-TCCACGCCGTTA--TACATATTCC----TTAGA-CAACAAAATTAAGAATATTTT-AAAAG--TAT---AT--ACTGG-AGAAAATAA-C-TTGTTTGATCTTACGTG-ATNATATTA-GTCGTG-CGACATGATCCACGTATTTCAACATGTC--AAAATTCATGCTACA-TA-AAT--GGCTTCAGCACAAGTCAGTA-GA-AGATGCCATACCATTG-AAAATAT-AAG-TAATTAAAGAGG---AGGTAAAG-ATATTTNAGGCCTAGTTAGGTTTATTTA-AAAAAATGTC-T-AGGAA-TTAATA--TAGTAAA-GTTCNACGTT-GTA-GC--TTTGC----TAATT--ATA--TGACCCG--AAATATCG-GAC---TTTTTGTCAAAT-ATGAGGA--TGCTATTCAAATG--CAAACA-ATG---GAT-CAAT-CATAA----CAG---CACCAAAATAAATTCTACTTCCAC--TAGCAAGATT-TA-C-GTT-G-T-TTCAC---ACG-GAA-T-GTC----A---GCAAAGATT--CATCATTCTTTTAT-CTA-C--G-TCGA-TC--------TT--G-TTTAC-AAAA--AACT-G------ATTTTGTGTA-------AT-ATTCC---A--A-GTGCCGATGCCC---AAT---T-----AC-A-----A-AGTCACC-GC-GA--CATAAAATAG-AA-ATTAC--C--AGTAGCGCTTGCACA-TGCT----ATAAAA-AATG-TAGACTTT--TATTATTATAAAACAAAATCG--TANNAAATGA--TTAG-TT-TGACAA-TTTTG-TCAAGCAGATTTA-C-ACATATA-TATGCCGC-TGT-AAA--ACTTGACAACGGTAGTAA
Reference ( gi|1 ) : TTTAAGGTAAGATTTGCACCATTTCAATA-ATAGCAAACAAGTCATGTTACATAGAAATGTGTTCAG----TAGG-AATTTG-------TCTTTTAA---AAATC-G-ACTTT--AAA-AAGAAAT-T-GCCCGT-ATTG-GTTTT--GACCACATGGG--CTTAA--TTT-GTG-ATGTTT------TGC-GTT---TTCTGGA---A---T--TTTC--TA--CTAAA----GAG-AATACTAG--CT---------TATA-T---AAAAACTACGCA----AAGCAA---ACT-TAC-CGGGTGG-A--------------AAGGAGATAT-AATTTTT-AA------AAGAG---TATAAC-TTAACA-AGT---TATGTTGATTG-GTTGA------TGAAATTTGAATTTGAA---ACACAAAAAAT---AGCACTTTT-TGTATATATGAT-----AAAATTCAAAGTGGTTGCCATGACAACAAAAAAGTGTATATTGAACAGCTTTG--TAAGACCTACGCC--ACAAAAAA--TTCATTTTTAAC-ATAA-AATTTCAA-TCATAGAGATTAGTAAAAGCA--A-ATAA-AAATAT---TA-C-AA--TCGGTCT----TTGTGTT-TCCATGG-TAACC--ATT--AACATTATTTTT-------ATTGGTGCGCTTTGTCACTAAGTTTT-ATCATT----GTACAACTTTTAATGGGT-TATTG---AATATTTTCAGTA-ACAAAATATGACTCCAACCCCGAAATGAAAAACTAGGTATATCTATTTGTCAAATATTGTGAAGTATTACACTATCCCTCATCACCCACCCCCTCCCCGATTTATTTAAACAATTTTACTATCGAAATATATAGATC----AAGCTGACGGTAGATGAAGGTAAAA-TATTGAATTTTTTAAAAATGATATTAAAATAGTACGACTTTAGCCACAAACATATAAGATAT-AATACCTTTG--TG-------T--------AAAAATGTAATATT-TAAA--TAAATCAAGG--TTCT--CTTATCGATAGGGCA-ATAAGCGGGTACGTATTATCAGTATATATATTGT--CAA----TTTCCTAGTACGT--TTTCCAC-GCTACC--GTTTCG--TCGT-AAATTC-TGTGTTT--TT------A-----------------AA----------ATACCACATTT-GAAATAGATTTCCTCTTTTATTCCATA---GCCT-AATGTTTAT-C-TA--CATGATAGATAAACGACTATCACC-----------------TT---CGTA------------------TT-TTAGCCCAGTCAGTGACGGCTCGAA---------AAGA--------------GGGGGGGGGG-------GTAAAGTTAGT----AAAT-GACACTTCGTAGATTG-TT---TATTCCCAAAA-TCCACGCCGTTA--TACATATTCC----TTAGACCAATAAAATTAAGAATGTCTT-AAAA---TAT---AT--ACTGG-AGTAAATAA-C-TTGTTTAATCTTACGTG-ATCATATTA-GTCGTG-CGACATGATCCACGTATTTCAACATGTC--AAAATTCATGCTACA-T--AAT--GGCTTCAGCACAAGTCAGTA-GA-AGATGCCATACCATTG-AAAATATAAAG-TAATTAAAGAGG---AGGTAAAGCATATTTTAGGCTTGGTTAGGTTTATTT--CAAAAATGTC-T-GGGAA-GTAATA--TAGTAAA-GTTCAACATT-GTA-GC--TTTGA----TAATT--ATA--TGACTCG--AAATATCG-GAC---TTTTTGTCAAAT-ATGAGGA--TACTATTCAAATG--CAAACA-ATGCCGGAT-CAAT-CATAA----CAG---CACCAAAATAAA-TCTACTTCTACTATAGCAATATT-TA-C-GTT-G-T-TTCAC---ACG-GAA-T-GTC----A---GCAAAGATT--CATCATT-TTTTAT-CTA-C--G-TCGA-TC--------TT--G-TTTAC-AAAA--AACT-G------ATTTGGTGCA-------AT-ATTTC---A--A-GTGCCGATGCCC---AAT---T-----AC-A-----A-AGTCACCGGC-GA--CAT-AAATAG-AA-ATTAC--C--AGTAACGCTTCCACA-TGCT----ATAAAA-AATG-TAGACTTT--TATTATTATAAAACAAAATCG--TAATAAATGA--TTA--TT-TGACAATTTTTG-TCAAGCAGATTTA-C-ACATA---TATGCCGC-TGT-AAA--ACTTGACAACGGTAGTAA
gi|2 : AAGGTAAGGTTTGCGCCATTTCAATATGTAGCGAACAAGTCATGTTACATAGCAATATGTTCAG----GAGG-GATTTG-------TCTTTTAA---ATATG-G-ACTTT--TAA-AAAAAAC-T-GTCCAT-GTTG-TTTTTT-GACCACATGGA--CTTAA--TTTTGTG-ATGTTT------TCC-GTT---TTCTGGA---A---T--TTAG--CA--ATAAA----GAG-AAT-CCAG--CT----------ATA-T---AAAAACTACACA----AAGCAA---ACT-CAC-CGGTTGG-A--------------AAGGAGATAT-ATTTTTTGAA------AAGAG---TATTAG-TTATCA-AGT---TATGTGAATTG-GTTGA------TGAAATTTGAATTCAAA---GCACAAAAA-T---AGCACTTTC-TGTATCTTTGAT-----AAAATTCAAAGTGGTTGCCATGACAACAAAAAAG-GTATATTGAACAGCTTTG--TAAGACCTACGTC--ACAAAAAA--GTCACTTTTAAC-ATAA-AATTTCAA-TCATAAGGATTAGTAATAGCA--A-ATAA-AAATAT---TA-CCAA--CCCGGCT----TTGTGTT-TCCATGAATAACC--ATT--AACATTATTTTT-------GTTGGTGCATTTTGTCACTAGGTTTT-ATCATT----GTACAACTTTT-ATGGGTGTATTG---AATATTTTCAATA-ACAAAATATGACTCCAACCCCGAAATGAAAAACTCGTTATATCTATTTGTC-AATATTGTCAAGTATTGCACTATCCCTCAT----TACCCCCTCCCCTATTTATTTAAACAA-TTTACTATCGAAATATATAGATCATTTAAGCTGACGATCGATGAAGGTAAAATTATTGATTTTTTTTAAAATGATATTAAATTAGTCCGACTTTAGCCACAAAAATATAAGA-ATGAATACATTTGGTTGTCTACCAT--------AGAAATGTAATATT-TAAA--TAAATCAAGA--TTGTTGTTTATAG-TAATTCT-ATAAATG---AAGTGTTATCAGTA-AT-TATCGC--CAA----TTTTCCGGCAGGT--TTTACAC-GCTCCC--GTTTCG--TCGT-AAATTC-TGTGTTTCATTGGCTCGA-----------------AACTGTCTTTAGATACCACATTT-GAAATAAATTTCCTCTTTTATTCCATA---GCCT-GATGTTTAA-C-TA--CATGACAGATAAACGACTATCACC-----------------AT---CGCAAACAAAACAATGTTGCATTT-TTAGCCAAGTCATTGACGGCTCAAA---------GGGG--------------GGGGGGGGGG-------GTAAAGCTAGTA---AAAT-AACACTTTGTAAATTG-TTTTATGTCCCCAACA-TCCACGCCGTTA--TGAATACTCCTAAATTAGACTAACAAAATTAAGAATATTTTAAAAA---TAG---AT--ACTGG-AAAAAATAA-CTTTGTTTGATCTTACGTG-ATCATATTA-GTCGTG-CGACATGATCCATGTATTTCAACATGTC--AAAATTCATGCAACA-TA-AAT--AGCTTCAGTACAAGTCAGTA-GA-AGATGCCATACCATTGAAAAATATTAAG-TAATAAAA---G---AGGTAAAGCATA-TTTAGGCCTAGCTAGGTTTATTT--CAAAAATGTC-T-AGGAATGTAGTA------AAA-GTTCTACA-T-GTA-GC--TTTGC----TAATT--ATA--TAACCCG--AAATATCG-GAC---TTTTTGTCAAAT-ATGAGGA--TGCTATTCAAATG--CAAACA-AT----GAT-CAAT-CATAA----CAG---TACCAAAATAAATTCTACTTCCAC--TAGCAAGATT-TA-C-GTT-G-T-TTCAC---ATG-G-A-T-GTC----A---GCAAAGA--------------TTAT-CTA-C--A-TCGA-TCTTTGACAATT--G-TTTACAAAAA--AACT-G------ATCTTGTGTA-------AT-ATTCC---A--A-GTGCCGATGCCC---AAT---
gi|11 : AGGTAAGATTTGCAACATTTTTTTA-------------TCATGT--------AGT---TTCAA----TAGG-AATTTACATTGTATCTTTAAA---AAATTAG-ACTTT--AAA-TAAAAAT---GCCCGT-GTCGTTTTTT--GATCAGATGGG--TCTTT--TTT-GT--CTGTTCTAGATATGC-AAC---TTTTAGATTTACACT--TTTC--CAATCTATA----CAG-AATATTA---CTGG-------TA-A-T---AAA
gi|14 : cgttggTAGCAA-CAAGTCATGTTA----GCAATATGTTCAG-----GGG-AATTTG-------T-TTTTAA---AAG---G-ACTTT--TAA-AAGAAAT-TGGTCCAT-GTTA---TTT--GACCACATAGG--CTTAAT-TTT-GTG-ATGTTT------TGC-GTT---TTCTGGA---A------CTTCAGCA--ATAAA----AAG-A
gi|10 : tgTGTTCAGATCATAGACAATTTG-------TCCTTTACTTCAAATG-GGACTTTTGAAATAATAAATGT-CTCCATCGTTG-ATTTTTTGACCACATAGGGTTTTAACTTTT-ATGAATGTTT------TGCTGTCATATTCTGGA---A---TACTTTG--TA--ATAAATTACGAGCAATGCTCGGCCT---------TATAGTCTAAAAAACTACCCATTTGACACAAGTCATTATACACGGTTGG-A--------------AA-GAGATA
gi|6 : taaccaaAA-AAAAAAT-T-GTCCGT-GT-G-GTTTTTTGACCAGACGGG--TTTAA--TTTTGTG-ATGTTA------TGC-ATT---TTCTGGA---A---T--TTTG--TA--A-AAA----GAA-AACACTTG--CTATATTCATGTATA-T---AAAAACTACACA----CGGCAA---ACT-TAC-TGGGTGA-A--------------AAGGTGATAT-AGTTTTA-AA------AAGAGTTATATA----TATTA-AGT---TCTGCCATTTG-GTAGA------TGAAATTTGAGTTAAAA---ACAC-AAAAAT---AACATTTTT-TATACATTTGAT-----CAAAGTGAAAGTGGTTGTCATGACAACAAAAAAG-GCATGTTGAACAGCTTTG--TAAGACCTACG-T--A-AAAAAA----CATTTTTAAC-ATGA-AATTGAGA-TGATAAAGATTCATAAAAGCA--A-CTAA-AAGGAC---TACC-AA--CCCGGCT-------TGTT-TCGATAG-TAACC--AATACAAAATAGTTTAT-------GTCTCTTCGTTTTATCA
gi|18 : ---AAAAACTACACA----AAACAA---ACT-CAC-CGGTTGGCAACTTTAACTGCCGCAAGGAGATAT-AATTTTT-t
gi|8 : ATATGAATTTTT-CATATCATAAGAG---TATAACATTAGTACAGTACATATGTGAATTCTGTTGAAAGGAATCAATTTTGAACTTCAATAAACACAAAAAATTAGAGCACTCTTATCCATCTTTGATTCCATATAATTCAA-GTGGTTGCAATAACA----------GT---TT------CTTTAGATAAGACCTACGTCATACAAAAAAATTCCACTTTTAACAATAATAATTTCAATTCACTAAGATTGCT-AAAGCATTATCTAACAAATATCTGTC-C-AACGTTGCTTTTTTGTTGTGTCATCCCTGG-TAACCAAATT---ACACCATTg
gi|16 : ATGATTTTTGAGTTAGATTGATG----TTGTCAC---GTTTTTGTCATTAACTGTGAAGCTGTCNNNNNNN-NNNNN---NNNNNNNNNNNNNTACAAAATATGACCCCAACCACGAAATGAAAAACTAGTTATATCcacttt
gi|19 : TTT-ATCATT----GTACGACTTTTAATGGGTGTATCGTTAAATATTTTCAATA-ACAAAATATGACTC
gi|3 : CAAAAATATAAGA-ATGAATACCTTTGGATG-------TCTTACCATAGAAATGTTATATTGTAAGATTAAATCAAAAATTTTTA-CTTAGTAAT--TTCATATA----GATGAGTATTATCACCATATATATCGTTACAAAAGTTTCCCCGGCACGTAATTTTTACAGCTCCCAGGTTTCGGTTCGCCAAATTCCTGTGTTC--TC------ATTGGCTCAAACGTCTTTAA----------ATACCACATTTTGAAATTAATTTCCT-TTTTATTCCATA---GCCTTGATGTTTATACATA--CATGGGACATACAC--CTATCGGCGAAAACAAAAAACAAGGTTGGATGTAA-----------------TTGTTAGCCCAGTCAGTGAC-ACTCACA---------AAAACAGGCCAGAACGCCGGGGGGGAGGAAGGGGCGTAAAGTTAGTTAAAAAGTAGACACTTCGTAAATTC-TTTTATGTCCCCAAAACTCCACGCCGTTAAGTACATATTCC----TAAAA--AATAA---TAAGAA
gi|4 : TCCATAATTGGCT-GATGTTTAT-C-TATGCATGGTAGATAAACGA-TATCACC-----------------TT----------------------------------CAGTCAGTGACGG-TCAAATTAGCACGGGGGA--------------GGGGGGGGGGGGCC---GT-AAGTTAGTA---AAAT-GG-ACTTCGT--GTTGTTT---TAT----AACA-T-CACG-CGTTA--TAC--ATTTC----TTAGA-CAAC-AAATTAGAAATATTTT-AAAAAT-TAT---AT--ACTGG-AGT-AATAA-C-TTGTTTGATCTTACGTG-A-AATAGTA-GTCGTG-CGACATGATCCACGTATTTC-ACATGTC----AATTCATGCTACA-TAAAAT--GGATTGAGCA-AAGTCAGTA-GATAGATG-CATACCATTG-AAAATAT-AAT-TAATT--AGAGG---CGGTAAAG-ATATTTAAGGTCTGGTTAGG-TTATTTA-AAAAAATGTC-T-GGGAA-TTGATA--TGTTAAA-GTTCAACA-T-GTA-GC--TTTAT----TAATTAAATATTTGA-TCG--AAAT-TCG-AAC---TTTTTGTCAAAT-ATGAGGA--T----------------AATA-ATTC--GAT-C-AT-CATAA-----AG---CACCAAA--AAA-TCTACTTCCAC--TAGCAATATTCTA-C-GTT-GTT-TTCAC---ACG-GAA-T-GTC----A---GCAAAGATT--CATCATTATTTTAT-CTA-T--GATCGA-TC--------TT--G-T------AAA--AACT-GTGGGGCGGTTGGTGCA-------ATAATTTC---A--A-GTG-CGATGCTC---AA----G-----AC-A-----AGAGT--CCGGCGGA--CATAAAATAGAAA-ATTAC--CGTAGCGGCGCTTCCA-A-TGCT----AT---G-AATT-TAGACTTTTATATTATTAT-CAAC-AAATCG--TATAAAATGGGTTTA--TT-TGACA--TTTTG-TC-AGCAGATTTA-CTACGTATAGTATGCCG--TGTAAAA--ACTTGACAACGGTAaacacaacaaagtgaagagagtgaataatactaataatgaaaagaatattgaatgaactggtagaaaataaacttgtttgatcttacgtgcattctattatatggtaacgatgatccacatatttcaacatgtcccaaaattcatgctacaataatatggcctcagcacaagtcaagatggagtgccttaccattgaaattatagctaattaaagagggtatttcaagcatagttaggtttatttaaaaaaaatgtcgtaaggaatcaatatgtagtaaaataaaatgttcgtacgcaatgtaaagactaattatgagacccgacaagtatcgagacgcttttttgtcaaatgatgagagcctgctattcaaatggctgaacataggtgatagaatgcataacaagatcaccaagacgaattctaggtccagcgagaagatttagcagttgtgttcacaaaacgagaatagtctcgtacccgcacagattagcatcgttcttttatagtagcgtcgatctttcgctttacaaaaaactagatttgtgtaatattccaccatttgccgatgccaaattacaaaagtcaactgcgaataaatagaagattactttatagtgcttgcacattgctataaaatgttatacttttattattagaaaaagaatcggttaagaaagattaggttaggacaatccctgttcaagcag
gi|3 : AATAATACTAATAATG-----AAAAGAATATTGAATGAACTGGTAGAAAATAAAC-TTGTTTGATCTTACGTGCATTCTATTATATGGTAACGA--TGATCCACATATTTCAACATGTCCCAAAATTCATGCTACAAT--AATATGGCCTCAGCACAAGTCAAGATGG-AG-TGCCTTACCATTG-AAATTAT--AGCTAATTAAAGAGG------------GTATTTCAAGCATAGTTAGGTTTATTTAAAAAAAATGTCGTAAGGAA-TCAATATGTAGTAAA-ATAAAATGTTCGTACGCAATGTAAAGACTAATT--ATG--AGACCCGACAAGTATCGAGACGCTTTTTTGTCAAATGATGAGAGCCTGCTATTCAAATGGCTGAACATAGGT--GATAGAATGCATAA----CAAGATCACCAAGACGAATTCTAGGTCCAGCG-AG-AAGATT-TAGCAGTT-G-TGTTCACAAAACGAGAA-TAGTCTCGTACCCGCACAGATTAGCATCGTTCTTTTATAGTAGC--G-TCGA-TC--------TTTCGCTTTAC-AAAA--AACTAG------ATTT-GTGTA-------AT-ATTCC---ACCATTTGCCGATGCCA---AAT---T-----ACAA-----A-AGTCAACTGC-GA---AT-AAATAG-AAGATTACTTT--A-TAGTGCTTGCACATTGCT----AT--AA-AATGTTATACTTT--TATTATTAGAAAA-AGAATCGGTTAAGAAA-GA--TTAGGTTAGGACAATCCCTGTTCAAGCAGagttagtaagcctaaaatattagcaagtacatgaattcttcatttgacattgtggtgggagagcatctacgtagtcgtgagcactttttcattgtgacgtcatatgtgggtgagcacttttgtcattgtgacgtcataagtgggaaatgtcggaagtactcagaggttatctccctgtttgtttgaacgctgacctt
gi|5 : caaaaatataagaatgaatacctttggatgtcttaccatagaaatgttatattgtaagattaaatcaaaaatttttacttagtaatttcatatagatgagtattatcaccatatatatcgttacaaaagtttccccggcacgtaatttttacagctcccaggtttcggttcgccaaattcctgtgttctcattggctcaaacgtctttaaataccacattttgaaattaatttcctttttattccatagccttgatgtttatacatacatgggacatacacctatcggcgaaaacaaaaaacaaggttggatgtaattgttagcccagtcagtgacactcacaaaaacaggccagaacgccgggggggaggaaggggcgtaaagttagttaaaaagtagacacttcgtaaattcttttatgtccccaaaactccacgccgttaagtacatattcctaaaaaataataagaaaacacaacaaagtgaagagagtgATGTCATACCATTG-AAA-TATAAAG-TAATTA----GGTTTATCTAAAAAAAATT-----CTTTGTT---TTTTTTT-------ATGTA-T-AGGAA-----TA--TAGTAAAAGTTCTACAT--GTA-GC--TTTGC----TAAAT--ATA--TGACCCG--AAATATCG-GAC---TTTTTGTCAAA--ATGAGGA--TGCTATTCATATG--CAAACA-ATG----AT-CAAT-CATAA----CAG---CACCAAAATAAATTCTACTTCCAC--TAGCAAGATT-TA-C-GTT-GTT-TTCAC---ACG-GAA-T-GTC----A---GCAAAGATT--CATCATTCTTTTAT-C-A-C--G-TCGA-TCT-------TT--G-TTTAC-AAAA--AACT-G------ATTTTGTGTA-------AT-ATTCCAGAA--A-TTACCGGAGCGC-----T---T-----GC-A----------CAT--GC-----TAT-AAAAAA-AA-AT---------GTAG-ACTTTTAT--TATT----ATAAAACAA-----------------ATCGTAA---AAAAT------------GA--TTA--TT-TGACAA-TTTTG-TCAAGCAGATTTA-C-ACATA---TATGCTGC-TGT-AAA--ACTTAACAACGGTAGTAA
gi|20 : ATTCAAATG--CAAACA-AT----GAT-CAAT-CATAATTAGCAG---CACCAAAATAAATTCTACTTCCACTAgcctaaataacaacttcatttgtgtattcagaaagacctgtgatgcagagctctacgtagtcgtgacacactttttctatgtgacgtataatgtgggaatgtacggaggtacatccagagttatctccctgttgttgcaaacctcac
gi|17 : --CATACA-ATG----AT-CAAT-TATAA----CAA---CACCAAAATAAA-C-----TCTG----------ATT-TC-C-GTT-G-T-TTCAC---ATG-GAA-C--TC----A-----------T--CATCCTTCTTTTAT-CAA-C--G-TCGAGTC--------TTC-A-TTTAC-AAAA--AA
gi|7 : TT-TA-C-GTTTG-G-TTCAC---ACG-GAAAT-GTC----A---GCAAAGAT------------------CTA-C--G-CTGA-TC--------TTT-G-TTTCA-AAAA--AACT-G------ATCTTGTGTA-------AT-ATTCC---A--A-GTGCCGATGCCC---AATATTT-----AC-A-----A-AGTCACTAGC-GAGACAT-AAATAG-AA-ATTAC--C---GTAGCGCTTGCACA-TGCA----ATAAAA-AATG-TAGACCTT--TATTATTATAAAAACTAATCG---AATAAATGA--TCAG-TT-TGACAA--TTTG-TCAAGCAGATTTACC-ATATATACTATACCGC-TGT--AA--ACTTAACAACGTTAGTAA
gi|12 : -T-TTCAC---ACT-AAA-T-ATC----A---GCAAACAAT--CAGCATC-TTTTAC-CTG-CAAG-CCA------------TT--G-TTTA--AAAATCAATT-T------ACTTTCTCCATATACTGGT-ATTCC---A--A-ATGACAGTGCTCTTTAAT---TTAGGGGC-AGTTTCA-AGTCACC-----A--CATAAAATCA-AA-ATTA---C--AGTAGTG----CACA---CTAGAGACAAAA-AGTG-TAGAtcctaaataacagaagtacatgacattctttcattgtgtgttattcagaaggacattgatgcagagctctacgtagtcgtgacgcactttctcatctgtgt
gi|9 : TTAC--C---GTAGCGCTTGCACA-TGCT----A-AATA-AATG-TAGACTTT--TACAATTATAAAACAAAATCG--TATTGAATGA--TTA--TT-TGACA--TTTTG-TCAAGCAGGTTTA-C-ACATA---TA--CCGCTTTT-AAAATACTTGACAACAGTAGTAA
4 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|13 ): ATTTGTGTATTCAGAAGGACCTGTGATGCAAAGCTCTACGTAGTCGTGACTCACTTTTTCATTGTGACGTCATAATGTGGGTGACGCATTTTTCATTGTGACGTCATAAAGCGGGAAATATACGGAGGTCATCCAGAGTTATCCCCCTGTTGTTGCTGACCTGATTAAATTA
Unaligned ( gi|15 ): AGAGCTTCTACGTAGTCGTGACGCAACTTTTTCATTGTGACGTCCATAATGTGAGTGACACACCTTTTCAATTGTGAACGCCAATAAAGTGGGAAATGTACGGAGGTACATCAGAGGTATCTCCCTGT
Unaligned ( gi|21 ): ACGAGTTATCTCCCTGTTGTCGCAAACCTGACCTTAAACAAATTTTGTAGTTTATGAAATA
Unaligned ( gi|22 ): GATACATCAAGAGTTATCTCCTTGTTGTTGCAAA
Alignments
lowQualScore : 1111111111 11111111111111111111111111111111111111111111111
lowQualScore : 222 4444 22222 2222222 111 1111 2 1111 111111 111 1111111111 1111 5555555555555 111 1111 222222 44444444444444 222222 1 1 222 1 111 1 222222 1 11 1 111 1 22222 1 11 111 44444 1 1 1 11111 1 222222 3333333 1 1 11 111 3333333 11 11 111 2 4444 2 2222 1 1 11 3333333333 2 333 33333333 11 22 222222 4444444444 33 2 33 33 22 2 888888888888888888888888888888888888888888 111 1 1 1 11 66666666666666666666666666666666666666666666666 777777777777777777777777777777 222 111 1 1 11 55555555555555555555555555 444444444 22222 22 3333333 1 1 1 1 1 1 111 111 11 2 11111111111 1 1 111 11 2222 222222 11 11 11 111 11 22222 1111 111 1111 1111 22222222 11 111111 1111 111 111 33333333333333333333333333333333333333333 2222222 1111 111 111111 2 111 11 11 11
lowQualScore : 0 11 22 99 111 3 2222 33 22222 8 6666666 444 0 8 8 1 1111 88 6 6 1 0 4444 6 6 999999 6 111 7777777777 6 99 4444 6 3 1 3333333333333 0 444 8 7777 333333 0 8 77777777777777 8 8 888888 0 0 555 3 0 777 44 0 888888 0 1 33 5 777 0 1 2 55555 3 3 0 444 2 33 666 11111 0 0 2 0 22 3 77777 0 555555 0 2222222 0 0 33 777 1 2222222 2 1 333 7 33 33 5 5 0 777 1 1 0 2 2222 3 0 4444 2 5 4 4 4 2 3 6 1 22 4444444444 1 3 111 33333333 22 7 11 11 444444 0 0 11 7 7 7777777777 0 1 00 1 3 00 00 44 3 777777777777777777777777777777777777777777 7 7 1 6 777 0 0 0 33 1 2 2 2 33333333333333333333333333333333333333333333333 666666666666666666666666666666 33 666 3 777 7 0 2 44 3 6 0 2 0 2 2 33 3 88888888888888888888888888 3 000000000 55555 00 2222222 0 9 0 0 0 44 0 0 2 3 777 111 33 2 2 0 8 3 8 8 88 8 77777777777 6 6 1 2 0 0 999 5 8 8 0 99 11 8 8 1 2222 8 333333 11 11 11 0 8 444 88 11 6 77 5 77777 5 5 2222 000 0 5 77 2 5 5 5 5 5 5 5 888 5 5 5 0000 888 0000 7777 5 0 5 66 5 5 33333333 66 5 77 66 666666 0 2222 000 5 000 77 5 0 44444444444444444444444444444444444444444 1 7 6 6 0000000 6 0 5 2222 55 5 5 99 555 444444 99 3 99 7 222 6 8 8 44 66 8 88 11
lowQualScore : . .. .. .. ... . .... .. ..... . ....... ... . . . . .... .. . . . . .... . . ...... . ... .......... . .. .... . . . ............. . ... . .... ...... . . .............. . . ...... . . ... . . ... .. . ...... . . .. . ... . . . ..... . . . ... . .. ... ..... . . . . .. . ..... . ...... . ....... . . .. ... . ....... . . ... . .. .. . . . ... . . . . .... . . .... . . . . . . . . . .. .......... . . ... ........ .. . .. .. ...... . . .. . . .......... . . .. . . .. .. .. . .......................................... . . . . ... . . . .. . . . . ............................................... .............................. .. ... . ... . . . .. . . . . . . . .. . .......................... . ......... ..... .. ....... . . . . . .. . . . . ... ... .. . . . . . . . .. . ........... . . . . . . ... . . . . .. .. . . . .... . ...... .. .. .. . . ... .. .. . .. . ..... . . .... ... . . .. . . . . . . . . ... . . . .... ... .... .... . . . .. . . ........ .. . .. .. ...... . .... ... . ... .. . . ......................................... . . . . ....... . . . .... .. . . .. ... ...... .. . .. . ... . . . .. .. . .. ..
lowQualScore : 7 77 00 88 222 2 5555 55 66666 0 0000000 000 8 0 0 0 8888 33 7 7 7 5 3333 7 7 222222 7 777 0000000000 7 22 2222 7 8 0 8888888888888 8 000 0 0000 000000 6 0 00000000000000 0 0 888888 0 0 000 5 0 555 55 0 888888 0 0 88 5 555 0 0 5 00000 2 2 0 555 5 88 222 88888 0 0 0 0 00 2 22222 0 555555 2 0000000 0 0 88 000 0 5555555 0 0 555 3 88 88 8 2 8 555 0 0 0 5 5555 0 0 5555 5 5 0 0 0 5 3 7 0 33 3333333333 0 3 333 77777777 00 3 33 33 333333 7 7 77 3 3 7777777777 7 0 77 0 7 33 33 00 3 000000000000000000000000000000000000000000 3 3 0 7 555 0 0 0 88 0 5 5 0 22222222222222222222222222222222222222222222222 222222222222222222222222222222 22 222 2 555 0 0 5 00 2 5 2 5 0 5 5 88 2 00000000000000000000000000 2 000000000 00000 55 5555555 0 8 0 0 0 22 0 0 5 2 000 000 22 5 5 0 0 2 0 0 88 0 44444444444 0 6 4 2 8 8 222 6 0 0 8 22 00 0 0 0 2222 0 000000 00 00 00 8 0 000 88 00 7 99 7 99999 7 7 1111 000 1 7 99 5 7 7 7 7 0 0 0 888 0 0 0 6666 888 4444 6666 0 4 0 99 0 0 11111111 99 0 55 99 444444 3 1111 000 7 000 99 7 7 44444444444444444444444444444444444444444 0 3 7 7 7777777 6 7 7 1111 11 7 7 22 777 000000 22 3 22 3 555 7 0 0 22 88 0 88 00
consensus : NNNAAGGTAAGATTTGCGCCATTTCAATATGTAGCGAACAAGTCATGTTACATAGCAATATGTTCAG----TAGG-AATTTG-------TCTTTTAA---AAAT-GG-ACTTTTAAAA--A-AAAT-TG-TCCGT-GTTGGTTTTTTGACCACATGGG--C-TTAA-TTTTGTGA-TGTTT------TGC-GTT---TTCTGGA---A---T--TTT-GCAA--TAAA----GAG-AATACTNG--CT--------GTATA---TAAAAA-CTACACA----AAGCAAACTCAC------CGGTTGG-A--------------AAGGAGATAT-AATTTTT-AA------AAGAG-TA-TAAC-TTANCA-AGT---TATGTNAATTG-GTTGA------TGAAATTTGAA-TTCGA--AACACAAAAAAT---AGCACTTTT-TGTATNTTTGAT-----AAAATTCAAAGTGGTTGCCATGACAACAAAAAAG-GTATATTGAACAGCTTTG--TAAGACCTACGTC--ACAAAAAAG--T-CACTTTTAAC-ATAA-AATTTCAA-TCATAAAGATTAGTAAAAGCA--A-NTAA-AAATAT---TACCAACCCGGCT------TTGTGTT-TCCATG-GTAACC--ATT--AACATNATTTTTG-------TTGGTGCGTTTTGTCACTAGGTTTTATCATTG--TACGA--CTTTTAATGGGTGTATCG---AATATTTTCAATAACAAAATATGACTCCAACCCCGAAATGAAAAACTAGTTATATCTATTTGTCAAATATTGTNAAGTATTGCACTATCCCTCATCACCCACCCCCTCCCCNATTTATTTAAACAATTTTACTATCGAAATATATAGATCATTTAAGCTGACGGTNGATGAAGGTAAAATTATTGANTTTTTTNAAAATGATATTAAANTAGTNCGACTTTAGCCACAAAAATATAAGA-ATGAATACCTTTGG-TGTC--------TACCATAGAAATGTAATATT-TAAA--TAAATCAAGA--TTNT--CTTATNGATAGTTCATATAAGCGGGTAAGTATTATCAGTATATATATCGT--CAA----TTTCCCGGCACGT--TTTNCAC-GCTCCC--GTTTCG--TCG-TAAATT-CTGTGTTCCATTGGCTCGATTGGCTCAAACGTCTTTAACTGTCTTTAGA-TACCACATTTTGAAATAAATTTCCTCTTTTATTCCATA---GCCT-GATGTTTAT-C-TA--CATGGTAGATAAACGACTATCACC-----------------TT---CGTAA-----------------TT-TTAGCCCAGTCAGTGAC-------------GGCTCAAA-CG-C----GGGAGGGGGGGGGGGGC-GTAAAGTTAGT---AAAAT-GACACTTCGTAAATTGTTTTATGTCCCCAANA-TCCACGCCGTTA--TACATATTCC----T---------TAG------ACCAACAAAATTAAGA---------ATATT-----TTAAAAA-TATAT-------ACTGG-AGAAAATAA-C-TTGTTTGATCTTACGTG-ATCATATTA-GTCGTG-CGACATGATCCACGTATTTCAACATGTC--AAAATTCATGCTACA-T-AA-ATGGCTTCAGCACAAGTCAGTAGATAGA-TGCCATACCATTG-AAA-ATA-TAA-GTAATTAAAGAGG---AGGTAAAGCATATTT-AGGCCTGGTTAGGTTTATTT-AAAAAAATGTC-T-AGGAATTAATA--TAGT-AAA-GTTCAACATT-GTA-GCTTTG------CTAATT--ATA--TGACCCG--AAATATCG-GAC---TTTTTGTCAAAT-ATGAGGA--TGCT-ATTCAAATG--CAAACA-ATG---GAT-CAAT-CATAA----CAG---CACCAAAATAAATTCTACTTCCA-CTA--GCAAGATT-TA-C-GTT-G-T-TT-CAC---ACG-GAA-T-GTC----A---GCAAAGATT--CATCATTCTTTTAT-CTA-C--G-TCGA-TC--------TT--G-TTTAC-AAAA--AACTG------ATTTT----GTGTA---AT-ATTCC---A--A-GTGCCGATGCCC---AAT---T-----AC-A-----A-AGTC-AC---C-GC-GACATAAAATAG-AA-ATTAC--C--AGTAGCGCTTGCACA-TGCT----ATAAAA-AATG-TAGACTTT--TATTATTATAAAACAAAATCG--TAATAAATGA--TTA-TTT--GACAA-T-TTTG-TCAAGCAGATTTA-C-ACGTATA-TATGCCGC-TGT-AAA--ACTTGACAACGGTAGTAA
Reference ( family-39 ) : NNNAAGGTAAGGTTTGCGNCATTTCNNTATGTAGCGA-CAAGTCATGTTA----GCAATATGTTCAG----TAGG-AATTTG-------TCTTTTAA---AAAT-GG-ACTTTNAAAA--A-AAAT-TG-TCCGT-GTTGNTTTTTTGACCACATGGG--T-TTAA-TTTTGTGA-TGTTT------TGC-GTT---TTCTGGA---A---T--TTT-GCAA--TAAA----GAG-AATACTNG--CT--------GTATA---TAAAAA-CTACACA----AAGCAAACTCAC------CGGTTGG-A--------------AAGGAGATAT-AATTTTT-AA------AAGAG-TA-TAA--TTATTA-AGT---TATGCGAATTG-GTTGA------TGAAATTTGAA-TTNAA--AACACAAAAAAT---AGCACTTTT-TNTATCTTTGAT-----AAAATTCAAAGTGGTTGCCATGACAACAAAAAAG-GTATGTTGAACAGCTTTG--TAAGACCTACGTC--ACAAAAAA---C-CACTTTTAAC-ATAA-AATTTCGA-TCATAAAGATTNNTAAAAGCA--A-CTAA-AAATAT---TA-CAACCCGGCT------TTGTGTT-TCCATG-GTAACC--ATT--AACATNATTTTTG-------TCGNTGCGTTTTGTCACTAGGTTTTATCATTG--TACGA--CTTTTAATGGGTGTATCG---AATATTTTCAATAACAAAATATGACTCCAACCNCGAAATGAAAAACTNGTTATATCTATTTGTC-AATATTGTCAAGTATTGCACTATCCCTCAT----TACCCCCTCCCCTATTTATTTAAACAA-TTTACTATCGAAATATATAGATCATTTAAGCTGACGATCGATGAAGGTAAAATTATTGATTTTTTTTAAAATGATATTAAATTAGTCCGACTTTAGCCACAAAAATATAAGA-ATGAATACNTTTGGNTGTCTACCATCTTACCATAGAAATGTNATATTGTAAGATTAAATCAAGAATTTNTNGCTTANNGATAATTCNTATAAATGGATGAGTGTTATCANCATATATATCGCTACAAAAGTTTCCCCGGCANGTAATTTNCACAGCTCCCAGGTTTCGGTTCGCCAAATTCCTGTGTTCCATCGGCTCGATTGGCTCAAACGTCTTTAACTGTCTTTAGA-TACCACATTTTGAAATNAATTTCCTCTTTTATTCCATA---GCCT-GATGTTTAT-C-TA--CATGGNAGATAAACGACTATCGCC-----------------TT---CGCAA-----------------TT-TTAGCCCAGTCAGTGAC-------------GGCTCAAA---------GGGAGGGGGGGGGGGG--GTAAAGTTAGT---AAAAT-GACACTTCGTAAATTGTTTTATGTCCCCAACA-TCCACGCCGTTA--TACATATTCC----T---------TAG------AC-AACAAAATTAAGA---------ATATT-----TTAAAAG-TATAT-------ACTGG-AGAAAATAA-C-TTGTTTGATCTTACGTG-ATNATATTA-GTCGTG-CGACATGATCCACGTATTTCAACATGTC--AAAATTCATGCTACA-T-AA-ATGGCTTCAGCACAAGTCAGTAGA-AGA-TGCCATACCATTG-AAA-ATA-TAA-GTAATTAAAGAGG---AGGTAAAG-ATATTTNAGGCCTAGTTAGGTTTATTT-AAAAAAATGTC-T-AGGAATTAATA--TAGT-AAA-GTTCNACGTT-GTA-GCTTTG------CTAATT--ATA--TGACCCG--AAATATCG-GAC---TTTTTGTCAAAT-ATGAGGA--TGCT-ATTCAAATG--CAAACA-ATG---GAT-CAAT-CATAA----CAG---CACCAAAATAAATTCTACTTCCA-CTA--GCAAGATT-TA-C-GTT-G-T-TT-CAC---ACG-GAA-T-GTC----A---GCAAAGATT--CATCATTCTTTTAT-CTA-C--G-TCGA-TC--------TT--G-TTTAC-AAAA--AACTG------ATTTT----GTGTA---AT-ATTCC---A--A-GTGCCGATGCCC---AAT---T-----AC-A-----A-AGTC-AC---C-GC-GACATAAAATAG-AA-ATTAC--C--AGTAGCGCTTGCACA-TGCT----ATAAAA-AATG-TAGACTTT--TATTATTATAAAACAAAATCG--TANNAAATGA--TTAGTTT--GACAA-T-TTTG-TCAAGCAGATTTA-C-ACATATA-TATGCCGC-TGT-AAA--ACTTGACAACGGTAGTAA
gi|1 : AAGGTAAGATTTGCACCATTTCAATA-ATAGCAAACAAGTCATGTTACATAGAAATGTGTTCAG----TAGG-AATTTG-------TCTTTTAA---AAAT-CG-ACTTTAAAAA--G-AAAT-TG-CCCGT-ATTGGTTTT--GACCACATGGG--C-TTAA-TTT-GTGA-TGTTT------TGC-GTT---TTCTGGA---A---T--TTT-CTAC--TAAA----GAG-AATACTAG--CT---------TATA---TAAAAA-CTACGCA----AAGCAAACTTAC------CGGGTGG-A--------------AAGGAGATAT-AATTTTT-AA------AAGAG-TA-TAAC-TTAACA-AGT---TATGTTGATTG-GTTGA------TGAAATTTGAA-TTTGA--AACACAAAAAAT---AGCACTTTT-TGTATATATGAT-----AAAATTCAAAGTGGTTGCCATGACAACAAAAAAGTGTATATTGAACAGCTTTG--TAAGACCTACGCC--ACAAAAAA---TTCATTTTTAAC-ATAA-AATTTCAA-TCATAGAGATTAGTAAAAGCA--A-ATAA-AAATAT---TA-CAATCGGTCT------TTGTGTT-TCCATG-GTAACC--ATT--AACATTATTTTTA-------TTGGTGCGCTTTGTCACTAAGTTTTATCATTG--TACAA--CTTTTAATGGGT-TATTG---AATATTTTCAGTAACAAAATATGACTCCAACCCCGAAATGAAAAACTAGGTATATCTATTTGTCAAATATTGTGAAGTATTACACTATCCCTCATCACCCACCCCCTCCCCGATTTATTTAAACAATTTTACTATCGAAATATATAGATC----AAGCTGACGGTAGATGAAGGTAAAA-TATTGAATTTTTTAAAAATGATATTAAAATAGTACGACTTTAGCCACAAACATATAAGATAT-AATACCTTTG--TG---------------TAAAAATGTAATATT-TAAA--TAAATCAAGG--TTCT--CTTATCGATAGGGCA-ATAAGCGGGTACGTATTATCAGTATATATATTGT--CAA----TTTCCTAGTACGT--TTTCCAC-GCTACC--GTTTCG--TCG-TAAATT-CTGTGTT
gi|1 : tttTGTTTTTAAAATACCACATTT-GAAATAGATTTCCTCTTTTATTCCATA---GCCT-AATGTTTAT-C-TA--CATGATAGATAAACGACTATCACC-----------------TT---CGTA------------------TT-TTAGCCCAGTCAGTGAC-------------GGCTCGAA---------AAGAGGGGGGGGGGG----TAAAGTTAGT---AAA-T-GACACTTCGTAGATTGTTT---ATTCCCAAAA-TCCACGCCGTTA--TACATATTCC----T---------TAG------ACCAATAAAATTAAGA---------ATGTC-----TTAAAA--TATAT-------ACTGG-AGTAAATAA-C-TTGTTTAATCTTACGTG-ATCATATTA-GTCGTG-CGACATGATCCACGTATTTCAACATGTC--AAAATTCATGCTACA-T-AA--TGGCTTCAGCACAAGTCAGTAGA-AGA-TGCCATACCATTG-AAA-ATA-TAAAGTAATTAAAGAGG---AGGTAAAGCATATTTTAGGCTTGGTTAGGTTTATTT-CAAAAA-TGTC-T-GGGAAGTAATA--TAGT-AAA-GTTCAACATT-GTA-GCTTTG------ATAATT--ATA--TGACTCG--AAATATCG-GAC---TTTTTGTCAAAT-ATGAGGA--TACT-ATTCAAATG--CAAACA-ATGCCGGAT-CAAT-CATAA----CAG---CACCAAAATAAAT-CTACTTCTA-CTATAGCAATATT-TA-C-GTT-G-T-TT-CAC---ACG-GAA-T-GTC----A---GCAAAGATT--CATCATT-TTTTAT-CTA-C--G-TCGA-TC--------TT--G-TTTAC-AAAA--AACTG------ATTTG----GTGCA---AT-ATTTC---A--A-GTGCCGATGCCC---AAT---T-----AC-A-----A-AGTC-AC---CGGC-GACAT-AAATAG-AA-ATTAC--C--AGTAACGCTTCCACA-TGCT----ATAAAA-AATG-TAGACTTT--TATTATTATAAAACAAAATCG--TAATAAATGA--TTA-TTT--GACAATT-TTTG-TCAAGCAGATTTA-C-AC--ATA-TATGCCGC-TGT-AAA--ACTTGACAACGGTAGTAAtttaaaataccacatttgaaatagatttcctcttttattccatagcctaatgtttatctacatgatagataaacgactatcaccttcgtattttagcccagtcagtgacggctcgaaaagagggggggggggtaaagttagtaaatgacacttcgtagattgtttattcccaaaatccacgccgttatacatattccttagaccaataaaattaagaatgtcttaaaatatatactggagtaaataacttgtttaatcttacgtgatcatattagtcgtgcgacatgatccacgtatttcaacatgtcaaaattcatgctacataatggcttcagcacaagtcagtagaagatgccataccattgaaaatataaagtaattaaagaggaggtaaagcatattttaggcttggttaggtttatttcaaaaatgtctgggaagtaatatagtaaagttcaacattgtagctttgataattatatgactcgaaatatcggactttttgtcaaatatgaggatactattcaaatgcaaacaatgccggatcaatcataacagcaccaaaataaatctacttctactatagcaatatttacgttgtttcacacggaatgtcagcaaagattcatcattttttatctacgtcgatcttgtttacaaaaaactgatttggtgcaatatttcaagtgccgatgcccaattacaaagtcaccggcgacataaatagaaattaccagtaacgcttccacatgctataaaaaatgtagacttttattattataaaacaaaatcgtaataaatgattatttgacaatttttgtcaagcagatttacacatatatgccgctgtaaaacttgacaacggtagtaa
gi|10 : tttaaggtaagatttgcaccatttcaataatagcaaacaagtcatgttacatagaaatgtgttcagtaggaatttgtcttttaaaaatcgactttaaaaagaaattgcccgtattggttttgaccacatgggcttaatttgtgatgttttgcgttttctggaattttctactaaagagaatactagcttatataaaaactacgcaaagcaaacttaccgggtggaaaggagatataatttttaaaagagtataacttaacaagttatgttgattggttgatgaaatttgaatttgaaacacaaaaaatagcactttttgtatatatgataaaattcaaagtggttgccatgacaacaaaaaagtgtatattgaacagctttgtaagacctacgccacaaaaaattcatttttaacataaaatttcaatcatagagattagtaaaagcaaataaaaatattacaatcggtctttgtgtttccatggtaaccattaacattatttttattggtgcgctttgtcactaagttttatcattgtacaacttttaatgggttattgaatattttcagtaacaaaatatgactccaaccccgaaatgaaaaactaggtatatctatttgtcaaatattgtgaagtattacactatccctcatcacccaccccctccccgatttatttaaacaattttactatcgaaatatatagatcaagctgacggtagatgaaggtaaaatattgaattttttaaaaatgatattaaaatagtacgactttagccacaaacatataagatataatacctttgtgtaaaaatgtaatatttaaataaatcaaggttctcttatcgatagggcaataagcgggtacgtattatcagtatatatattgtcaatttcctagtacgttttccacgctaccgtttcgtcgtaaattctgATGTTCAGATCATAGACAATTTG-------TCCTTTACTTCAAAT-GGGACTTTTGAAATAATAAATGTC-TCCATCGTTGATTTTTTGACCACATAGGGTT-TTAACTTTTATGAATGTTT------TGCTGTCATATTCTGGA---A---TACTTT-GTAA--TAAATTACGAGCAATGCTCGGCCT---------TATAGTCTAAAAAACTACCCATTTGACACAAG-TCATTATACACGGTTGG-A--------------AA-GAGATA
gi|11 : taaccaAGGTAAGATTTGCAACATTTTTTTAT-------------CATGT-A----GT------TTCAA----TAGG-AATTTACATTGTATCTTTAAA---AAATTAG-ACTTTAAATA--A-AAA--TG-CCCGT-GTCG-TTTTTTGATCAGATGGG--TCTT---TTTTGT-C-TGTTCTAGATATGC-AAC---TTTTAGATTTACACT--TTT-CCAATCTATA----CAG-AATA-TTA--CTG-------GTA-A---TAAA
gi|12 : cgttgg-T-TT-CAC---ACT-AAA-T-ATC----A---GCAAACAAT--CAGCA-TCTTTTAC-CTG-CAAG-CCA------------TT--G-TTTA--AAAATCAATTT------ACTTTCTCCATATACTGGT-ATTCC---A--A-ATGACAGTGCTCTTTAAT---TTAGGGGC-AGTTTCA-AGTC-AC---C-----ACATAAAATCA-AA-ATTA---C--AGTAG----TGCACA---CTAGAGACAAAA-AGTG-TAGA
gi|14 : TGTAGCAA-CAAGTCATGTTA----GCAATATGTTCAG-----GGG-AATTTG-------T-TTTTAA---AA---GG-ACTTTTAAAA--G-AAAT-TGGTCCAT-GTTA----TTTGACCACATAGG--C-TTAA-TTTTGTGA-TGTTT------TGC-GTT---TTCTGGA---A---C--TTCAGCAA--TAAA----AAG-A
gi|16 : ATGATTTTTGAGTTAGATTGATG----TTGTCAC--GTTTTTGTCATTAACTGTGAAGCTGTCNNNNNNNNNNNNN---NNNNNNNNNNNNTACAAAATATGACCCCAACCACGAAATGAAAAACTAGTTATATC
gi|17 : --CATACA-ATG----AT-CAAT-TATAA----CAA---CACCAAAATAAACTCT-----------------GATT-TC-C-GTT-G-T-TT-CAC---ATG-GAA-C--TC----A-----------T--CATCCTTCTTTTAT-CAA-C--G-TCGAGTC--------TTC-A-TTTAC-AAAA--AA
gi|18 : AAAAA-CTACACA----AAACAAACTCAC------CGGTTGGCAACTTTAACTGCCGCAAGGAGATAT-AATTTTT-
gi|19 : TTTATCATTG--TACGA--CTTTTAATGGGTGTATCGTTAAATATTTTCAATAACAAAATATGACTCg
gi|2 : AAGGTAAGGTTTGCGCCATTTCAATATGTAGCGAACAAGTCATGTTACATAGCAATATGTTCAG----GAGG-GATTTG-------TCTTTTAA---ATAT-GG-ACTTTTAAAA--A-AAAC-TG-TCCAT-GTTG-TTTTTTGACCACATGGA--C-TTAA-TTTTGTGA-TGTTT------TCC-GTT---TTCTGGA---A---T--TTA-GCAA--TAAA----GAG-AAT-CCAG--C----------TATA---TAAAAA-CTACACA----AAGCAAACTCAC------CGGTTGG-A--------------AAGGAGATAT-ATTTTTTGAA------AAGAG-TATTAG--TTATCA-AGT---TATGTGAATTG-GTTGA------TGAAATTTGAA-TTCAA--AGCAC-AAAAAT---AGCACTTTC-TGTATCTTTGAT-----AAAATTCAAAGTGGTTGCCATGACAACAAAAAAG-GTATATTGAACAGCTTTG--TAAGACCTACGTC--ACAAAAAAG--T-CACTTTTAAC-ATAA-AATTTCAA-TCATAAGGATTAGTAATAGCA--A-ATAA-AAATAT---TACCAACCCGGCT------TTGTGTT-TCCATGAATAACC--ATT--AACATTATTTTTG-------TTGGTGCATTTTGTCACTAGGTTTTATCATTG--TACAA--CTTTT-ATGGGTGTATTG---AATATTTTCAATAACAAAATATGACTCCAACCCCGAAATGAAAAACTCGTTATATCTATTTGTC-AATATTGTCAAGTATTGCACTATCCCTCAT----TACCCCCTCCCCTATTTATTTAAACAA-TTTACTATCGAAATATATAGATCATTTAAGCTGACGATCGATGAAGGTAAAATTATTGATTTTTTTTAAAATGATATTAAATTAGTCCGACTTTAGCCACAAAAATATAAGA-ATGAATACATTTGGTTGTC--------TACCATAGAAATGTAATATT-TAAA--TAAATCAAGA--TTGTTGTTTATAG-TAATTC-TATAAATG---AAGTGTTATCAGTA-AT-TATCGC--CAA----TTTTCCGGCAGGT--TTTACAC-GCTCCC--GTTTCG--TCG-TAAATT-CTGTGTTTCATTGGCTCGA-----------------AACTGTCTTTAGA-TACCACA-TTTGAAATAAATTTCCTCTTTTATTCCATA---GCCT-GATGTTTAA-C-TA--CATGACAGATAAACGACTATCACC-----------------AT---CGCAAACAAAACAATGTTGCATTT-TTAGCCAAGTCATTGAC-------------GGCTCAAA---------GG--GGGGGGGGGGGG--GTAAAGCTAGT---AAAAT-AACACTTTGTAAATTGTTTTATGTCCCCAACA-TCCACGCCGTTA--TGAATACTCCTAAAT---------TAG------ACTAACAAAATTAAGA---------ATATT-----TTAAAAA-TAGAT-------ACTGG-AAAAAATAA-CTTTGTTTGATCTTACGTG-ATCATATTA-GTCGTG-CGACATGATCCATGTATTTCAACATGTC--AAAATTCATGCAACA-T-AA-ATAGCTTCAGTACAAGTCAGTAGA-AGA-TGCCATACCATTGAAAA-ATATTAA-GTAATAAAA---G---AGGTAAAGCATATTT-AGGCCTAGCTAGGTTTATTT--CAAAAATGTC-T-AGG----AATG--TAGTAAAA-GTTCTACA-T-GTA-GCTTTG------CTAATT--ATA--TAACCCG--AAATATCG-GAC---TTTTTGTCAAAT-ATGAGGA--TGCT-ATTCAAATG--CAAACA-AT----GAT-CAAT-CATAA----CAG---TACCAAAATAAATTCTACTTCCA-CTA--GCAAGATT-TA-C-GTT-G-T-TT-CAC---ATG-G-A-T-GTC----A---GCAAAGA--------------TTAT-CTA-C--A-TCGA-TCTTTGACAATT--G-TTTACAAAAA--AACTG------ATCTT----GTGTA---AT-ATTCC---A--A-GTGCCGATGCCC---AAT---
gi|20 : -ATTCAAATG--CAAACA-ATG----AT-CAAT-CATAATTAGCAG---CACCAAAATAAATTCTACTTCCA-CTA--
gi|3 : CAAAAATATAAGA-ATGAATACCTTTGGATGTCT-------TACCATAGAAATGTTATATTGTAAGATTAAATCAAAAATTTTTA-CTTAGTAAT--TTCATATA----GATGAGTATTATCACCATATATATCGTTACAAAAGTTTCCCCGGCACGTAATTTTTACAGCTCCCAGGTTTCGGTTCGCCAAATTCCTGTGTTC-------TC-ATTGGCTCAAACGTCTTTAA----------A-TACCACATTTTGAAATTAATTTCCT-TTTTATTCCATA---GCCTTGATGTTTATACATA--CATGGGACATACAC--CTATCGGCGAAAACAAAAAACAAGGTTGGATGTAA-----------------TTGTTAGCCCAGTCAGTGACACTCACAAAAACAGGC-CAGAACGCC----GGGGGGGAGGAAGGGGC-GTAAAGTTAGTTAAAAAGTAGACACTTCGTAAATTCTTTTATGTCCCCAAAACTCCACGCCGTTAAGTACATATTCC----TAAAAAATAATAAGAAAACAC-AACAAAGTGAAGAGAGTGAATAATACTAATAATGAAAAG-AATATTGAATGAACTGGTAGAAAATAAAC-TTGTTTGATCTTACGTGCATTCTATTATATGGTAACGA--TGATCCACATATTTCAACATGTCCCAAAATTCATGCTACAAT-AATATGGCCTCAGCACAAGTCA--AGATGGAGTGCCTTACCATTG-AAA-TTA-TAG-CTAATTAAAGAG-----------G-GTATTTCAAGCATAGTTAGGTTTATTTAAAAAAAATGTCGTAAGGAATCAATATGTAGT-AAA-ATAAAATGTTCGTACGCAATGTAAAGACTAATT--ATG--AGACCCGACAAGTATCGAGACGCTTTTTTGTCAAATGATGAGAGCCTGCT-ATTCAAATGGCTGAACATAGGT--GATAGAATGCATAA----CAAGATCACCAAGACGAATTCTAGGTCCAGCGA--G-AAGATT-TAGCAGTT-G-TGTT-CACAAAACGAGAA-TAGTCTCGTACCCGCACAGATTAGCATCGTTCTTTTATAGTAGC--G-TCGA-TC--------TTTCGCTTTAC-AAAA--AACTA------GATTT----GTGTA---AT-ATTCC---ACCATTTGCCGATGCCA---AAT---T-----ACAA-----A-AGTCAAC---T-GC-GA-AT-AAATAG-AAGATTACTTT--A-TAGTGCTTGCACATTGCT----AT--AA-AATGTTATACTTT--TATTATTAGAAAA-AGAATCGGTTAAGAAA-GA--TTAGGTTAGGACAA-TCCCTGTTCAAGCAG
gi|4 : TCCATAATTGGCT-GATGTTTAT-C-TATGCATGGTAGATAAACGA-TATCACC-----------------TT----------------------------------CAGTCAGTGAC-------------GG-TCAAATTAGCACGGGGGAGGGGGGGGGGGGCCGT-AAGTTAGT---AAAAT-GG-ACTTCGT--GTTGTTTTAT------AACA-T-CACG-CGTTA--TAC--ATTTC----T---------TAG------AC-AAC-AAATTAGAA---------ATATT-----TTAAAAATTATAT-------ACTGG-AG-TAATAA-C-TTGTTTGATCTTACGTG-A-AATAGTA-GTCGTG-CGACATGATCCACGTATTTC-ACATGTC----AATTCATGCTACA-TAAA-ATGGATTGAGCA-AAGTCAGTAGATAGA-TG-CATACCATTG-AAA-ATA-TAA-TTAATT--AGAGG---CGGTAAAG-ATATTTAAGGTCTGGTTAGG-TTATTT-AAAAAAATGTC-T-GGGAATTGATA--TGTT-AAA-GTTCAACA-T-GTA-GCTTTA------TTAATTAAATATTTGA-TCG--AAAT-TCG-AAC---TTTTTGTCAAAT-ATGAGGA--TAATAATTC--------------------GAT-C-AT-CATAA-----AG---CACCAAAA-AA--TCTACTTCCA-CTA--GCAATATTCTA-C-GTT-GTT-TT-CAC---ACG-GAA-T-GTC----A---GCAAAGATT--CATCATTATTTTAT-CTA-T--GATCGA-TC--------TT--G-T------AAA--AACTGTGGGGCGGTTG----GTGCA---ATAATTTC---A--A-GTG-CGATGCTC---AA----G-----AC-A-----AGAGTC--C---G-GCGGACATAAAATAGAAA-ATTAC--CGTAGCGGCGCTTCCA-A-TGCT----AT---G-AATT-TAGACTTTTATATTATTAT-CAAC-AAATCG--TATAAAATGGGTTTA-TTT--GAC-A-T-TTTG-TC-AGCAGATTTA-CTACGTATAGTATGCCG--TGTAAAA--ACTTGACAACGGTA
gi|5 : A-TGTCATACCATTG-AAATATA--AA-GTAATTA----GGTTTATCTAAAA-AAAATT----CTTTGTT---TTTTTTT-A------TGTA-T-AGGAAT----A--TAGT-AAAAGTTCTACAT--GTA-GCTTTG------CTAAAT--ATA--TGACCCG--AAATATCG-GAC---TTTTTGTCAAA--ATGAGGA--TGCT-ATTCATATG--CAAACA-ATG----AT-CAAT-CATAA----CAG---CACCAAAATAAATTCTACTTCCA-CTA--GCAAGATT-TA-C-GTT-G-T-TTTCAC---ACG-GAA-T-GTC----A---GCAAAGATT--CATCATTCTTTTAT-C-A-C--G-TCGA-TCT-------TT--G-TTTAC-AAAA--AACTG------ATTTT----GTGTA---AT-ATTCCAGAA--A-TTACCGGAGCGC-----T---T-----GC-A-----------------C-AT-GCTATAAAA-AA-AA-AT---------GTAG-ACTTTTAT--TATT----ATAAAACAA-----------------ATCGTAAA---------------AAATGA--TTA-TTT--GACAA-T-TTTG-TCAAGCAGATTTA-C-AC--ATA-TATGCTGC-TGT-AAA--ACTTAACAACGGTAGTAAagttagtaagcctaaaatattagcaagtacatgaattcttcatttgacattgtggtgggagagcatctacgtagtcgtgagcactttttcattgtgacgtcatatgtgggtgagcacttttgtcattgtgacgtcataagtgggaaatgtcggaagtactcagaggttatctccctgtttgtttgaacgctgacctt
gi|6 : AAAA--A-AAAT-TG-TCCGT-GT-GGTTTTTTGACCAGACGGG--T-TTAA-TTTTGTGA-TGTTA------TGC-ATT---TTCTGGA---A---T--TTT-GTAA---AAA----GAA-AACACTTG--CTATATTCATGTATA---TAAAAA-CTACACA----CGGCAAACTTAC------TGGGTGA-A--------------AAGGTGATAT-AGTTTTA-AA------AAGAGTTA-TAT--ATATTA-AGT---TCTGCCATTTG-GTAGA------TGAAATTTGAG-TTAAA--AACAC-AAAAAT---AACATTTTT-TATACATTTGAT-----CAAAGTGAAAGTGGTTGTCATGACAACAAAAAAG-GCATGTTGAACAGCTTTG--TAAGACCTACGT-----AAAAAA---A-CATTTTTAAC-ATGA-AATTGAGA-TGATAAAGATTCATAAAAGCA--A-CTAA-AAGGAC---TACCAACCCGGCT---------TGTT-TCGATA-GTAACC--AATACAAAATAGTTTATG-------TCTCTTCGTTTTATCAgcctaaataacaacttcatttgtgtattcagaaagacctgtgatgcagagctctacgtagtcgtgacacactttttctatgtgacgtataatgtgggaatgtacggaggtacatccagagttatctccctgttgttgcaaacctcac
gi|7 : TT-TA-C-GTTTG-G-TT-CAC---ACG-GAAAT-GTC----A---GCAAAGAT------------------CTA-C--G-CTGA-TC--------TTT-G-TTTCA-AAAA--AACTG------ATCTT----GTGTA---AT-ATTCC---A--A-GTGCCGATGCCC---AATATTT-----AC-A-----A-AGTC-ACTAGC-GA-GACATAAA-TAG-AA-ATTAC--C---GTAGCGCTTGCACA-TGCA----ATAAAA-AATG-TAGACCTT--TATTATTATAAAAACTAATCG---AATAAATGA--TCAGTTT--GACAA---TTTG-TCAAGCAGATTTACC-ATATATACTATACCGC-TGT--AA--ACTTAACAACGTTAGTAAt
gi|8 : ATATGAATTTTT-CATATCATAAGAG-TA-TAACATTAGTACAGTACATATGTGAATTCTGTTGAAAGGAATCAATTTTGAACTTCAATAAACACAAAAAATTAGAGCACTCTTATCCATCTTTGATTCCATATAATTCAA-GTGGTTGCAATAACA----------GT---TT------CTTTAGATAAGACCTACGTCATACAAAAAAATTC-CACTTTTAACAATAATAATTTCAATTCACTAAGATTGCT-AAAGCATTATCTAACAAATATCTGTC-CAACGTTGCTTTTTTGTTGTGTCATCCCTG-GTAACCAAATT---ACACCATTtcctaaataacagaagtacatgacattctttcattgtgtgttattcagaaggacattgatgcagagctctacgtagtcgtgacgcactttctcatctgtgt
gi|9 : TTAC--C---GTAGCGCTTGCACA-TGCT----A-AATA-AATG-TAGACTTT--TACAATTATAAAACAAAATCG--TATTGAATGA--TTA-TTT--GAC-A-T-TTTG-TCAAGCAGGTTTA-C-ACATATA-----CCGCTTTT-AAAATACTTGACAACAGTAGTAAcacttt
4 sequences could not be aligned to this reference sequence:
Unaligned ( gi|13 ): ATTTGTGTATTCAGAAGGACCTGTGATGCAAAGCTCTACGTAGTCGTGACTCACTTTTTCATTGTGACGTCATAATGTGGGTGACGCATTTTTCATTGTGACGTCATAAAGCGGGAAATATACGGAGGTCATCCAGAGTTATCCCCCTGTTGTTGCTGACCTGATTAAATTA
Unaligned ( gi|15 ): AGAGCTTCTACGTAGTCGTGACGCAACTTTTTCATTGTGACGTCCATAATGTGAGTGACACACCTTTTCAATTGTGAACGCCAATAAAGTGGGAAATGTACGGAGGTACATCAGAGGTATCTCCCTGT
Unaligned ( gi|21 ): ACGAGTTATCTCCCTGTTGTCGCAAACCTGACCTTAAACAAATTTTGTAGTTTATGAAATA
Unaligned ( gi|22 ): GATACATCAAGAGTTATCTCCTTGTTGTTGCAAA
Alignments
lowQualScore : 11111111111111111111111111111111111111111111111
lowQualScore : 1 11111 22222 2222222 111 1111 1 11 111111 111 1111111111 1111 11 555555555 111 1111 222222 44444444444444 222222 111 111 1 111 1 222222 1 11 111 1 22222 1 11 111 2222 1 1 1 11111 1 1 11 3333333 1 1 11 111 3333333 11 11 111 1 2222 1 2222 1 1 2 1111 1 11 11 33 11 11 222222 11 2222 11 1 11 11 1 1 777777777777777777777777777777777777777777 111 1 1 1 11 55555555555555555555555555555555555555555555555 7777777777777777777777777777777 11 111 1 1 11 555555555555555555555555 444444444 22222 2222 111 11 1 1 1 1 1 1 111 111 11 1 1111 11 11 11 11 111 222222 11 11 11 111 11 22222 1111 111 1111 1111 22222222 11 111111 1111 111 111 33333333333333333333333333333333333333333 2222222 1111 111 111111 11 111 22 1 11
lowQualScore : 0 777777 2 2 55555 33 22222 8 6666666 444 0 8 8 1 1111 6666 6 1 7 55 6 6 999999 6 111 7777777777 6 99 4444 6 3 1 11 777777777 0 444 8 7777 333333 0 8 77777777777777 8 8 888888 777 555 1 0 777 1 0 888888 0 22 33 3 3 777 0 0 1 55555 3 3 0 3 0 2 33 666 1111 0 0 0 11 3 55555 0 0 22 0 2222222 0 0 33 777 1 2222222 0 333 7 33 33 5 5 0 777 5 1 3333 1 5 4444 1 5 1 1 1 1 3 6 6 6 8888 3 88 88 1 11 1 7 11 44 333333 7 7 88 8888 88 1 3 88 88 3 3 999999999999999999999999999999999999999999 7 7 6 777 0 0 0 33 0 2 2 99999999999999999999999999999999999999999999999 4444444444444444444444444444444 2 88 3 777 7 0 2 44 3 6 0 1 0 2 2 33 3 333333333333333333333333 3 000000000 55555 7777 777 33 0 9 0 0 0 33 0 0 2 3 777 111 33 2 2 5 8 3 8 8 88 8 77777 9999 8 0 99 1 1 0 0 11 33 8 8 0 99 11 8 8 1 999 8 333333 11 11 11 0 8 444 88 11 6 77 5 77777 5 5 2222 000 0 5 77 2 5 5 5 5 5 5 5 888 5 5 5 0000 888 0000 7777 55 5 66 5 5 33333333 66 5 77 66 666666 0 2222 000 5 000 77 5 0 44444444444444444444444444444444444444444 1 7 6 6 0000000 6 0 5 2222 55 5 5 99 555 444444 99 55 6 7 222 6 8 8 88 6 8 88 11
lowQualScore : . ...... . . ..... .. ..... . ....... ... . . . . .... .... . . . .. . . ...... . ... .......... . .. .... . . . .. ......... . ... . .... ...... . . .............. . . ...... ... ... . . ... . . ...... . .. .. . . ... . . . ..... . . . . . . .. ... .... . . . .. . ..... . . .. . ....... . . .. ... . ....... . ... . .. .. . . . ... . . .... . . .... . . . . . . . . . . .... . .. .. . .. . . .. .. ...... . . .. .... .. . . .. .. . . .......................................... . . . ... . . . .. . . . ............................................... ............................... . .. . ... . . . .. . . . . . . . .. . ........................ . ......... ..... .... ... .. . . . . . .. . . . . ... ... .. . . . . . . . .. . ..... .... . . .. . . . . .. .. . . . .. .. . . . ... . ...... .. .. .. . . ... .. .. . .. . ..... . . .... ... . . .. . . . . . . . . ... . . . .... ... .... .... .. . .. . . ........ .. . .. .. ...... . .... ... . ... .. . . ......................................... . . . . ....... . . . .... .. . . .. ... ...... .. .. . . ... . . . .. . . .. ..
lowQualScore : 7 888888 5 8 00000 55 66666 0 0000000 000 8 0 0 4 8888 7777 7 7 7 88 7 7 222222 7 777 0000000000 7 22 2222 7 8 0 00 000000000 8 000 0 0000 000000 6 0 00000000000000 0 0 888888 555 888 0 0 555 0 0 888888 0 22 88 2 2 555 0 2 0 00000 2 2 0 2 8 5 88 222 2222 0 0 0 00 2 88888 0 0 55 2 0000000 0 0 88 000 0 5555555 2 555 3 88 88 8 2 8 555 5 0 0000 0 5 5555 0 5 0 0 0 0 3 7 7 7 0000 3 33 33 0 77 0 3 00 77 333333 3 3 33 3333 33 0 3 33 33 3 3 555555555555555555555555555555555555555555 3 3 7 555 0 0 0 88 8 5 5 88888888888888888888888888888888888888888888888 0000000000000000000000000000000 5 88 2 555 0 0 5 00 2 5 2 0 0 5 5 88 2 000000000000000000000000 2 000000000 00000 0000 555 88 0 8 0 0 0 55 0 0 5 2 000 000 22 5 5 5 0 2 0 0 88 0 88888 6666 2 8 88 4 4 8 8 22 66 0 0 8 22 00 0 0 4 444 0 000000 00 00 00 8 0 000 88 00 7 99 7 99999 7 7 1111 000 1 7 99 5 7 7 7 7 0 0 0 888 0 0 0 6666 888 4444 6666 44 0 99 0 0 11111111 99 0 55 99 444444 3 1111 000 7 000 99 7 7 44444444444444444444444444444444444444444 0 3 7 7 7777777 6 7 7 1111 11 7 7 22 777 333333 22 88 7 3 555 7 0 0 66 0 0 88 00
consensus : NNNAAGGTAAGATTTGCGCCATTTCAATATGTAGCGAACAAGTCATGTTACATAGCAATATGTTCAG----TAGG-AATTTG-------TCTTTTAA---AAAT-GG-ACTTTTAAAA--A-AAAT-TG-TCCGT-GTTGGTTTTTTGACCACATGGG--CTTAA-TTTTGTGA-TGTTT------TGC-GTT---TTCTGGA---A---T--TTT-GCAA--TAAA----GAG-AATACTNG--CT--------GTATA---TAAAAA-CTACACA----AAGCAAACTCAC------CGGTTGG-A--------------AAGGAGATAT-AATTTTT-AA------AAGAG---TATAAC-TTANCA-AGT---TATGTNAATTG-GTTGA------TGAAATTTGAA-TTCGA--AACACAAAAAAT---AGCACTTTT-TGTATNTTTGAT-----AAAATTCAAAGTGGTTGCCATGACAACAAAAAAG-GTATATTGAACAGCTTTG--TAAGACCTACGTC--ACAAAAAAAT--CACTTTTAAC-ATAA-AATTTCAA-TCATAAAGATTAGTAAAAGCA--A-NTAA-AAATAT-TA-CCAACCCGGCT------TTGTGTT-TCCATG-GTAACC--ATT--AACATNATTTTTG-------TTGGTGCGTTTTGTCACTAGGTTTTATCATTG--TACGA--CTTTTAATGGGTGTATCG---AATATTTTCAATAACAAAATATGACTCCAACCCCGAAATGAAAAACTAGTTATATCTATTTGTCAAATATTGTNAAGTATTGCACTATCCCTCATCACCCACCCCCTCCCCNATTTATTTAAACAATTTTACTATCGAAATATATAGATCATTTAAGCTGACGGTNGATGAAGGTAAAATTATTGANTTTTTTNAAAATGATATTAAANTAGTNCGACTTTAGCCACAAAAATATAAGA-ATGAATACCTTTGG-TGTCT-ACCATAGAAATGTAATATT-TAAA--TAAATCAAGA--TTNT--CTTATNGATAGTTCATATAAGCGGGTAAGTATTATCAGTATATATATCGT--CAA----TTTCCCGGCACGT--TTTNCAC-GCTCCC--GTTTCG--TCGT-AAATTC-TGTGTTCCATTGGCTCGATTGGCTCAAACGTCTTTAACTGTCTTTAGA-TACCACATTTTGAAATAAATTTCCTCTTTTATTCCATA---GCCT-GATGTTTAT-C-TA--CATGGTAGATAAACGACTATCACC-----------------TT---CGTAA-----------------TT-TTAGCCCAGTCAGTGAC-------------GGCTCGA------ACG--GGGGGGGGGGGGGGGG-CGTAAAGTTAGT---AAAAT-GACACTTCGTAAATTGTTTTATGTCCCCAANA-TCCACGCCGTTA--TACATATTCC----T---------TAG----AC-CAACAAAATTAAGA---------ATATT-----TTAAAA--A-TAT---AT--ACTGG-AGAAAATAA-C-TTGTTTGATCTTACGTG-ATCATATTA-GTCGTG-CGACATGATCCACGTATTTCAACATGTC--AAAATTCATGCTACA-T-AA-ATGGCTTCAGCACAAGTCAGTAGATAGA-TGCCATACCATTG-AAA-ATA-TAA-GTAATTAAAGAGG---AGGTAAAGCATATTT-AGGCCTGGTTAGGTTTATTTAAAAAAA-TGTC-TA-GGAATTAATAT--AGT-AAA-GTTCAACATT-GTA-GCTTTG------CTAATT--ATA--TGACCCGA--AATATCG-GAC---TTTTTGTCAAAT-ATGAGGA--TGCT-ATTCAAATG--CAAACA-ATG---GATC-AAT-CATAA----CAG---CACCAAAATAAATTCTACTTCCA-CTA--GCAAGATT-TA-C-GTT-G-T-TT-CACA---CG-GAA-T-GTC----A---GCAAAGATT--CATCATTCTTTTATC-TA-C--G-TCGA-TC--------TT--G-TTTAC-AAAA--AACTG------ATTTT----GTGTA---AT-ATTCC---A--A-GTGCCGATGCCC---AAT---T-----AC-A-----A-AGTC-AC---C-GC-GACATAAAATAG-AA-ATTAC--C--AGTAGCGCTTGCACA-TGCT----ATAAAA-AATG-TAGACTTT--TATTATTATAAAACAAAATCG--TAATAAATGA--TTA--TT-TGACAA-T-TTTG-TCAAGCAGATTTA-C-AC-TATA-TATGCCGC-TGT-AAA--ACTTGACAACGGTAGTAA
Reference ( family-39 ) : NNNAAGGTAAGATTTGCGCCATTTCAATATGTAGCGAACAAGTCATGTTACATAGCAATATGTTCAG----TAGG-AATTTG-------TCTTTTAA---AAAT-GG-ACTTTTAAAA--A-AAAT-TG-TCCGT-GTTGGTTTTTTGACCACATGGG--CTTAA-TTTTGTGA-TGTTT------TGC-GTT---TTCTGGA---A---T--TTT-GCAA--TAAA----GAG-AATACTNG--CT--------GTATA---TAAAAA-CTACACA----AAGCAAACTCAC------CGGTTGG-A--------------AAGGAGATAT-AATTTTT-AA------AAGAG---TATAAC-TTANCA-AGT---TATGTNAATTG-GTTGA------TGAAATTTGAA-TTCGA--AACACAAAAAAT---AGCACTTTT-TGTATNTTTGAT-----AAAATTCAAAGTGGTTGCCATGACAACAAAAAAG-GTATATTGAACAGCTTTG--TAAGACCTACGTC--ACAAAAAAGT--CACTTTTAAC-ATAA-AATTTCAA-TCATAAAGATTAGTAAAAGCA--A-NTAA-AAATAT-TA-CCAACCCGGCT------TTGTGTT-TCCATG-GTAACC--ATT--AACATNATTTTTG-------TTGGTGCGTTTTGTCACTAGGTTTTATCATTG--TACGA--CTTTTAATGGGTGTATCG---AATATTTTCAATAACAAAATATGACTCCAACCCCGAAATGAAAAACTAGTTATATCTATTTGTCAAATATTGTNAAGTATTGCACTATCCCTCATCACCCACCCCCTCCCCNATTTATTTAAACAATTTTACTATCGAAATATATAGATCATTTAAGCTGACGGTNGATGAAGGTAAAATTATTGANTTTTTTNAAAATGATATTAAANTAGTNCGACTTTAGCCACAAAAATATAAGA-ATGAATACCTTTGG-TGTCT-ACCATAGAAATGTAATATT-TAAA--TAAATCAAGA--TTNT--CTTATNGATAGTTCATATAAGCGGGTAAGTATTATCAGTATATATATCGT--CAA----TTTCCCGGCACGT--TTTNCAC-GCTCCC--GTTTCG--TCGT-AAATTC-TGTGTTCCATTGGCTCGATTGGCTCAAACGTCTTTAACTGTCTTTAGA-TACCACATTTTGAAATAAATTTCCTCTTTTATTCCATA---GCCT-GATGTTTAT-C-TA--CATGGTAGATAAACGACTATCACC-----------------TT---CGTAA-----------------TT-TTAGCCCAGTCAGTGAC-------------GGCTCAA------ACGC-GGGAGGGGGGGGGGGG-CGTAAAGTTAGT---AAAAT-GACACTTCGTAAATTGTTTTATGTCCCCAANA-TCCACGCCGTTA--TACATATTCC----T---------TAG----AC-CAACAAAATTAAGA---------ATATT-----TTAAAA--A-TAT---AT--ACTGG-AGAAAATAA-C-TTGTTTGATCTTACGTG-ATCATATTA-GTCGTG-CGACATGATCCACGTATTTCAACATGTC--AAAATTCATGCTACA-T-AA-ATGGCTTCAGCACAAGTCAGTAGATAGA-TGCCATACCATTG-AAA-ATA-TAA-GTAATTAAAGAGG---AGGTAAAGCATATTT-AGGCCTGGTTAGGTTTATTTAAAAAAA-TGTC-TA-GGAATTAATAT--AGT-AAA-GTTCAACATT-GTA-GCTTTG------CTAATT--ATA--TGACCCGA--AATATCG-GAC---TTTTTGTCAAAT-ATGAGGA--TGCT-ATTCAAATG--CAAACA-ATG---GATC-AAT-CATAA----CAG---CACCAAAATAAATTCTACTTCCA-CTA--GCAAGATT-TA-C-GTT-G-T-TT-CACA---CG-GAA-T-GTC----A---GCAAAGATT--CATCATTCTTTTATC-TA-C--G-TCGA-TC--------TT--G-TTTAC-AAAA--AACTG------ATTTT----GTGTA---AT-ATTCC---A--A-GTGCCGATGCCC---AAT---T-----AC-A-----A-AGTC-AC---C-GC-GACATAAAATAG-AA-ATTAC--C--AGTAGCGCTTGCACA-TGCT----ATAAAA-AATG-TAGACTTT--TATTATTATAAAACAAAATCG--TAATAAATGA--TTA--TT-TGACAA-T-TTTG-TCAAGCAGATTTA-C-ACGTATA-TATGCCGC-TGT-AAA--ACTTGACAACGGTAGTAA
gi|1 : AAGGTAAGATTTGCACCATTTCAATA-ATAGCAAACAAGTCATGTTACATAGAAATGTGTTCAG----TAGG-AATTTG-------TCTTTTAA---AAAT-CG-ACTTTAAAAA--G-AAAT-TG-CCCGT-ATTGGTTTT--GACCACATGGG--CTTAA-TTT-GTGA-TGTTT------TGC-GTT---TTCTGGA---A---T--TTT-CTAC--TAAA----GAG-AATACTAG--CT---------TATA---TAAAAA-CTACGCA----AAGCAAACTTAC------CGGGTGG-A--------------AAGGAGATAT-AATTTTT-AA------AAGAG---TATAAC-TTAACA-AGT---TATGTTGATTG-GTTGA------TGAAATTTGAA-TTTGA--AACACAAAAAAT---AGCACTTTT-TGTATATATGAT-----AAAATTCAAAGTGGTTGCCATGACAACAAAAAAGTGTATATTGAACAGCTTTG--TAAGACCTACGCC--ACAAAAAATT--CATTTTTAAC-ATAA-AATTTCAA-TCATAGAGATTAGTAAAAGCA--A-ATAA-AAATAT-TA--CAATCGGTCT------TTGTGTT-TCCATG-GTAACC--ATT--AACATTATTTTTA-------TTGGTGCGCTTTGTCACTAAGTTTTATCATTG--TACAA--CTTTTAATGGGT-TATTG---AATATTTTCAGTAACAAAATATGACTCCAACCCCGAAATGAAAAACTAGGTATATCTATTTGTCAAATATTGTGAAGTATTACACTATCCCTCATCACCCACCCCCTCCCCGATTTATTTAAACAATTTTACTATCGAAATATATAGATC----AAGCTGACGGTAGATGAAGGTAAAA-TATTGAATTTTTTAAAAATGATATTAAAATAGTACGACTTTAGCCACAAACATATAAGATAT-AATACCTTT-G-TG--------TAAAAATGTAATATT-TAAA--TAAATCAAGG--TTCT--CTTATCGATAGGGCA-ATAAGCGGGTACGTATTATCAGTATATATATTGT--CAA----TTTCCTAGTACGT--TTTCCAC-GCTACC--GTTTCG--TCGT-AAATTC-TGTGTT
gi|1 : tttTGTTTTTAAAATACCACATTT-GAAATAGATTTCCTCTTTTATTCCATA---GCCT-AATGTTTAT-C-TA--CATGATAGATAAACGACTATCACC-----------------TT---CGTA------------------TT-TTAGCCCAGTCAGTGAC-------------GGCTCGA------A------AAGAGGGGGGGGGG--GTAAAGTTAGT---AAA-T-GACACTTCGTAGATTGTTT---ATTCCCAAAA-TCCACGCCGTTA--TACATATTCC----T---------TAG----AC-CAATAAAATTAAGA---------ATGTC-----TTAAAA----TAT---AT--ACTGG-AGTAAATAA-C-TTGTTTAATCTTACGTG-ATCATATTA-GTCGTG-CGACATGATCCACGTATTTCAACATGTC--AAAATTCATGCTACA-T-AA--TGGCTTCAGCACAAGTCAGTAGA-AGA-TGCCATACCATTG-AAA-ATA-TAAAGTAATTAAAGAGG---AGGTAAAGCATATTTTAGGCTTGGTTAGGTTTATTTCAAAAA--TGTC-TG-GGAAGTAATAT--AGT-AAA-GTTCAACATT-GTA-GCTTTG------ATAATT--ATA--TGACTCGA--AATATCG-GAC---TTTTTGTCAAAT-ATGAGGA--TACT-ATTCAAATG--CAAACA-ATGCCGGATC-AAT-CATAA----CAG---CACCAAAATAAAT-CTACTTCTA-CTATAGCAATATT-TA-C-GTT-G-T-TT-CACA---CG-GAA-T-GTC----A---GCAAAGATT--CATCATT-TTTTATC-TA-C--G-TCGA-TC--------TT--G-TTTAC-AAAA--AACTG------ATTTG----GTGCA---AT-ATTTC---A--A-GTGCCGATGCCC---AAT---T-----AC-A-----A-AGTC-AC---CGGC-GACAT-AAATAG-AA-ATTAC--C--AGTAACGCTTCCACA-TGCT----ATAAAA-AATG-TAGACTTT--TATTATTATAAAACAAAATCG--TAATAAATGA--TTA--TT-TGACAATT-TTTG-TCAAGCAGATTTA-C-AC--ATA-TATGCCGC-TGT-AAA--ACTTGACAACGGTAGTAAtttaaaataccacatttgaaatagatttcctcttttattccatagcctaatgtttatctacatgatagataaacgactatcaccttcgtattttagcccagtcagtgacggctcgaaaagagggggggggggtaaagttagtaaatgacacttcgtagattgtttattcccaaaatccacgccgttatacatattccttagaccaataaaattaagaatgtcttaaaatatatactggagtaaataacttgtttaatcttacgtgatcatattagtcgtgcgacatgatccacgtatttcaacatgtcaaaattcatgctacataatggcttcagcacaagtcagtagaagatgccataccattgaaaatataaagtaattaaagaggaggtaaagcatattttaggcttggttaggtttatttcaaaaatgtctgggaagtaatatagtaaagttcaacattgtagctttgataattatatgactcgaaatatcggactttttgtcaaatatgaggatactattcaaatgcaaacaatgccggatcaatcataacagcaccaaaataaatctacttctactatagcaatatttacgttgtttcacacggaatgtcagcaaagattcatcattttttatctacgtcgatcttgtttacaaaaaactgatttggtgcaatatttcaagtgccgatgcccaattacaaagtcaccggcgacataaatagaaattaccagtaacgcttccacatgctataaaaaatgtagacttttattattataaaacaaaatcgtaataaatgattatttgacaatttttgtcaagcagatttacacatatatgccgctgtaaaacttgacaacggtagtaa
gi|10 : tttaaggtaagatttgcaccatttcaataatagcaaacaagtcatgttacatagaaatgtgttcagtaggaatttgtcttttaaaaatcgactttaaaaagaaattgcccgtattggttttgaccacatgggcttaatttgtgatgttttgcgttttctggaattttctactaaagagaatactagcttatataaaaactacgcaaagcaaacttaccgggtggaaaggagatataatttttaaaagagtataacttaacaagttatgttgattggttgatgaaatttgaatttgaaacacaaaaaatagcactttttgtatatatgataaaattcaaagtggttgccatgacaacaaaaaagtgtatattgaacagctttgtaagacctacgccacaaaaaattcatttttaacataaaatttcaatcatagagattagtaaaagcaaataaaaatattacaatcggtctttgtgtttccatggtaaccattaacattatttttattggtgcgctttgtcactaagttttatcattgtacaacttttaatgggttattgaatattttcagtaacaaaatatgactccaaccccgaaatgaaaaactaggtatatctatttgtcaaatattgtgaagtattacactatccctcatcacccaccccctccccgatttatttaaacaattttactatcgaaatatatagatcaagctgacggtagatgaaggtaaaatattgaattttttaaaaatgatattaaaatagtacgactttagccacaaacatataagatataatacctttgtgtaaaaatgtaatatttaaataaatcaaggttctcttatcgatagggcaataagcgggtacgtattatcagtatatatattgtcaatttcctagtacgttttccacgctaccgtttcgtcgtaaattctgATGTTCAGATCATAGACAATTTG-------TCCTTTACTTCAAAT-GGGACTTTTGAAATAATAAATGTC-TCCATCGTTGATTTTTTGACCACATAGGGTTTTAACTTTTATGAATGTTT------TGCTGTCATATTCTGGA---A---TACTTT-GTAA--TAAATTACGAGCAATGCTCGGCCT---------TATAGTCTAAAAAACTACCCATTTGACACAAG-TCATTATACACGGTTGG-A--------------AA-GAGATA
gi|11 : taaccaAGGTAAGATTTGCAACATTTT----TTTA---------TCATGT-----AGT------TTCAA----TAGG-AATTTACATTGTATCTTTAAA---AAATTAG-ACTTTAAATA--A-AAAT--G-CCCGT-GTCG-TTTTTTGATCAGATGGGT-CTT---TTTTGT-C-TGTTCTAGATATGC-AAC---TTTTAGATTTACACT--TTT-CCAATCTATA----CAG-AATA-TTA--CTG-------GTA-A---TAAA
gi|12 : cgttgg-T-TT-CACA---CT-AAA-T-ATC----A---GCAAACAAT--CAGCA-TCTTTTACC-TG-CAAG-CCA------------TT--G-TTTA--AAAATCAATTT------ACTTTCTCCATATACTGGT-ATTCC---A--A-ATGACAGTGCTCTTTAAT---TTAGGGGC-AGTTTCA-AGTC-AC---C-----ACATAAAATCA-AA-ATTA---C--AGTAG----TGCACA---CTAGAGACAAAA-AGTG-TAGA
gi|14 : TGTAGC-AACAAGTCATGTTA----GCAATATGTTCAG-----GGG-AATTTG-------T-TTTTAA---AA---GG-ACTTTTAAAA--G-AAAT-TGGTCCAT-GTTA----TTTGACCACATAGG--CTTAA-TTTTGTGA-TGTTT------TGC-GTT---TTCTGGA---A---C--TTCAGCAA--TAAA----AAG-A
gi|16 : ATGATTTTTGAGTTAGATTGATG----TTGTCAC--GTTTTTGTCATTAACTGTGAAGCTGTCNNNNNNNNNNNNN---NNNNNNNNNNNNTACAAAATATGACCCCAACCACGAAATGAAAAACTAGTTATATC
gi|17 : --CATACA-ATG----ATC-AAT-TATAA----CAA---CACCAAAATAAACTCT-----------------GATT-TC-C-GTT-G-T-TT-CACA---TG-GAA-C--TC----A-----------T--CATCCTTCTTTTATC-AA-C--G-TCGAGTC--------TTC-A-TTTAC-AAAA--AA
gi|18 : AAAAA-CTACACA----AAACAAACTCAC------CGGTTGGCAACTTTAACTGCCGCAAGGAGATAT-AATTTTT-
gi|19 : TTTATCATTG--TACGA--CTTTTAATGGGTGTATCGTTAAATATTTTCAATAACAAAATATGACTCg
gi|2 : AAGGTAAGGTTTGCGCCATTTCAATATGTAGCGAACAAGTCATGTTACATAGCAATATGTTCAG----GAGG-GATTTG-------TCTTTTAA---ATAT-GG-ACTTTTAAAA--A-AAAC-TG-TCCAT-GTTG-TTTTTTGACCACATGGA--CTTAA-TTTTGTGA-TGTTT------TCC-GTT---TTCTGGA---A---T--TTA-GCAA--TAAA----GAG-AAT-CCAG--CT----------ATA---TAAAAA-CTACACA----AAGCAAACTCAC------CGGTTGG-A--------------AAGGAGATAT-ATTTTTTGAA------AAGAG---TATTAG-TTATCA-AGT---TATGTGAATTG-GTTGA------TGAAATTTGAA-TTCAA--AGCACAAAA-AT---AGCACTTTC-TGTATCTTTGAT-----AAAATTCAAAGTGGTTGCCATGACAACAAAAAAG-GTATATTGAACAGCTTTG--TAAGACCTACGTC--ACAAAAAAGT--CACTTTTAAC-ATAA-AATTTCAA-TCATAAGGATTAGTAATAGCA--A-ATAA-AAATAT-TA-CCAACCCGGCT------TTGTGTT-TCCATGAATAACC--ATT--AACATTATTTTTG-------TTGGTGCATTTTGTCACTAGGTTTTATCATTG--TACAA--CTTTT-ATGGGTGTATTG---AATATTTTCAATAACAAAATATGACTCCAACCCCGAAATGAAAAACTCGTTATATCTATTTGTC-AATATTGTCAAGTATTGCACTATCCCTCAT----TACCCCCTCCCCTATTTATTTAAACAA-TTTACTATCGAAATATATAGATCATTTAAGCTGACGATCGATGAAGGTAAAATTATTGATTTTTTTTAAAATGATATTAAATTAGTCCGACTTTAGCCACAAAAATATAAGA-ATGAATACATTTGGTTGTCT-ACCATAGAAATGTAATATT-TAAA--TAAATCAAGA--TTGTTGTTTATAG-TAATTC-TATAAATG---AAGTGTTATCAGTA-AT-TATCGC--CAA----TTTTCCGGCAGGT--TTTACAC-GCTCCC--GTTTCG--TCGT-AAATTC-TGTGTTTCATTGGCTCGA-----------------AACTGTCTTTAGA-TACCACA-TTTGAAATAAATTTCCTCTTTTATTCCATA---GCCT-GATGTTTAA-C-TA--CATGACAGATAAACGACTATCACC-----------------AT---CGCAAACAAAACAATGTTGCATTT-TTAGCCAAGTCATTGAC-------------GGCTCAA------A----GGGGGGGGGGGGGG----GTAAAGCTAGT---AAAAT-AACACTTTGTAAATTGTTTTATGTCCCCAACA-TCCACGCCGTTA--TGAATACTCCTAAAT---------TAG----AC-TAACAAAATTAAGA---------ATATT-----TTAAAA--A-TAG---AT--ACTGG-AAAAAATAA-CTTTGTTTGATCTTACGTG-ATCATATTA-GTCGTG-CGACATGATCCATGTATTTCAACATGTC--AAAATTCATGCAACA-T-AA-ATAGCTTCAGTACAAGTCAGTAGA-AGA-TGCCATACCATTGAAAA-ATATTAA-GTAATAAAA---G---AGGTAAAGCATATTT-AGGCCTAGCTAGGTTTATTT-CAAAAA-TGTC-TA-GG----AATGT--AGTAAAA-GTTCTACA-T-GTA-GCTTTG------CTAATT--ATA--TAACCCGA--AATATCG-GAC---TTTTTGTCAAAT-ATGAGGA--TGCT-ATTCAAATG--CAAACA-AT----GATC-AAT-CATAA----CAG---TACCAAAATAAATTCTACTTCCA-CTA--GCAAGATT-TA-C-GTT-G-T-TT-CACA---TG-G-A-T-GTC----A---GCAAAGA--------------TTATC-TA-C--A-TCGA-TCTTTGACAATT--G-TTTACAAAAA--AACTG------ATCTT----GTGTA---AT-ATTCC---A--A-GTGCCGATGCCC---AAT---
gi|20 : -ATTCAAATG--CAAACA-ATG----ATC-AAT-CATAATTAGCAG---CACCAAAATAAATTCTACTTCCA-CTA--
gi|3 : CAAAAATATAAGA-ATGAATACCTTTGGATGTCTTACCATAGAAATGTTATATTGTAAGATTAAATCAAAAATTTTTA-CTTAGTAAT--TTCATATA----GATGAGTATTATCACCATATATATCGTTACAAAAGTTTCCCCGGCACGTAATTTTTACAGCTCCCAGGTTTCGGTTCGCCAAATTCCTGTGTTC-------TC-ATTGGCTCAAACGTCTTTAA----------A-TACCACATTTTGAAATTAATTTCCT-TTTTATTCCATA---GCCTTGATGTTTATACATA--CATGGGACATACAC--CTATCGGCGAAAACAAAAAACAAGGTTGGATGTAA-----------------TTGTTAGCCCAGTCAGTGACACTCACAAAAACAGGCCAGA------ACGCCGGGGGGGAGGAAGGGG-CGTAAAGTTAGTTAAAAAGTAGACACTTCGTAAATTCTTTTATGTCCCCAAAACTCCACGCCGTTAAGTACATATTCC----TAAAAAATAATAAGAAAACACAACAAAGTGAAGAGAGTGAATAATACTAATAATGAAAAGAA-TATTGAATGAACTGGTAGAAAATAAAC-TTGTTTGATCTTACGTGCATTCTATTATATGGTAACGA--TGATCCACATATTTCAACATGTCCCAAAATTCATGCTACAAT-AATATGGCCTCAGCACAAGTCA--AGATGGAGTGCCTTACCATTG-AAA-TTA-TAG-CTAATTAAAGAGG----------GTAT-TTC-AAGCATAGTTAGGTTTATTTAAAAAAAATGTCGTAAGGAATCAATATGTAGT-AAA-ATAAAATGTTCGTACGCAATGTAAAGACTAATT--ATG--AGACCCGACAAGTATCGAGACGCTTTTTTGTCAAATGATGAGAGCCTGCT-ATTCAAATGGCTGAACATAGGT--GATAGAATGCATAA----CAAGATCACCAAGACGAATTCTAGGTCCAGCGA--G-AAGATT-TAGCAGTT-G-TGTT-CACAAAACGAGAA-TAGTCTCGTACCCGCACAGATTAGCATCGTTCTTTTATAGTAGC--G-TCGA-TC--------TTTCGCTTTAC-AAAA--AACTA------GATTT----GTGTA---AT-ATTCC---ACCATTTGCCGATGCCA---AAT---T-----ACAA-----A-AGTCAAC---T-GC-GA-AT-AAATAG-AAGATTACTTT--A-TAGTGCTTGCACATTGCT----AT--AA-AATGTTATACTTT--TATTATTAGAAAA-AGAATCGGTTAAGAAA-GA--TTAGGTTAGGACAA-TCCCTGTTCAAGCAG
gi|4 : TCCATAATTGGCT-GATGTTTAT-C-TATGCATGGTAGATAAACGA-TATCACC-----------------TT----------------------------------CAGTCAGTGAC-------------GG-TCAAATTAGCACGG-GGGAGGGGGGGGGGGGCCGT-AAGTTAGT---AAAAT-GG-ACTTCGT--GTTGTTTTAT------AACA-T-CACG-CGTTA--TAC--ATTTC----T---------TAG----A--CAAC-AAATTAGAA---------ATATT-----TTAAAA--ATTAT---AT--ACTGG-AG-TAATAA-C-TTGTTTGATCTTACGTG-A-AATAGTA-GTCGTG-CGACATGATCCACGTATTTC-ACATGTC----AATTCATGCTACA-TAAA-ATGGATTGAGCA-AAGTCAGTAGATAGA-TG-CATACCATTG-AAA-ATA-TAA-TTAATT--AGAGG---CGGTAAAG-ATATTTAAGGTCTGGTTAGG-TTATTTAAAAAAA-TGTC-TG-GGAATTGATAT--GTT-AAA-GTTCAACA-T-GTA-GCTTTA------TTAATTAAATATTTGA-TCGA--AAT-TCG-AAC---TTTTTGTCAAAT-ATGAGGA--TAATAATTC--------------------GATC--AT-CATAA-----AG---CACCAAAA-AA--TCTACTTCCA-CTA--GCAATATTCTA-C-GTT-GTT-TT-CACA---CG-GAA-T-GTC----A---GCAAAGATT--CATCATTATTTTATC-TA-T--GATCGA-TC--------TT--G-T------AAA--AACTGTGGGGCGGTTG----GTGCA---ATAATTTC---A--A-GTG-CGATGCTC---AA----G-----AC-A-----AGAGTC--C---G-GCGGACATAAAATAGAAA-ATTAC--CGTAGCGGCGCTTCCA-A-TGCT----AT---G-AATT-TAGACTTTTATATTATTAT-CAAC-AAATCG--TATAAAATGGGTTTA--TT-TGAC-A-T-TTTG-TC-AGCAGATTTA-CTACGTATAGTATGCCG--TGTAAAA--ACTTGACAACGGTA
gi|5 : A-TGTCATACCATTG-AAATATA--AA-GTAATTA----GGTTTATCTAAAAAAAATT-----CTTTGTT---TTTTTTTA-------TGTA-TA-GGAAT----AT--AGT-AAAAGTTCTACAT--GTA-GCTTTG------CTAAAT--ATA--TGACCCGA--AATATCG-GAC---TTTTTGTCAAA--ATGAGGA--TGCT-ATTCATATG--CAAACA-ATG----ATC-AAT-CATAA----CAG---CACCAAAATAAATTCTACTTCCA-CTA--GCAAGATT-TA-C-GTT-G-T-TTTCACA---CG-GAA-T-GTC----A---GCAAAGATT--CATCATTCTTTTATC--A-C--G-TCGA-TCT-------TT--G-TTTAC-AAAA--AACTG------ATTTT----GTGTA---AT-ATTCCAGAA--A-TTACCGGAGCGC-----T---T-----GC-A-----------------C-AT-GCTATAAAA-AA-AA-AT---------GTAG-ACTTTTAT--TATT----ATAAAACAA-----------------ATCGTAAA---------------AAATGA--TTA--TT-TGACAA-T-TTTG-TCAAGCAGATTTA-C-AC--ATA-TATGCTGC-TGT-AAA--ACTTAACAACGGTAGTAAagttagtaagcctaaaatattagcaagtacatgaattcttcatttgacattgtggtgggagagcatctacgtagtcgtgagcactttttcattgtgacgtcatatgtgggtgagcacttttgtcattgtgacgtcataagtgggaaatgtcggaagtactcagaggttatctccctgtttgtttgaacgctgacctt
gi|6 : AAAA--A-AAAT-TG-TCCGT-GT-GGTTTTTTGACCAGACGGG--TTTAA-TTTTGTGA-TGTTA------TGC-ATT---TTCTGGA---A---T--TTT-GTAA---AAA----GAA-AACACTTG--CTATATTCATGTATA---TAAAAA-CTACACA----CGGCAAACTTAC------TGGGTGA-A--------------AAGGTGATAT-AGTTTTA-AA------AAGAGTTATATA----TATTA-AGT---TCTGCCATTTG-GTAGA------TGAAATTTGAG-TTAAA--AACAC-AAAAAT---AACATTTTT-TATACATTTGAT-----CAAAGTGAAAGTGGTTGTCATGACAACAAAAAAG-GCATGTTGAACAGCTTTG--TAAGACCTACGT-----AAAAAAA---CATTTTTAAC-ATGA-AATTGAGA-TGATAAAGATTCATAAAAGCA--A-CTAA-AAGGAC-TA-CCAACCCGGCT---------TGTT-TCGATA-GTAACC--AATACAAAATAGTTTATG-------TCTCTTCGTTTTATCAgcctaaataacaacttcatttgtgtattcagaaagacctgtgatgcagagctctacgtagtcgtgacacactttttctatgtgacgtataatgtgggaatgtacggaggtacatccagagttatctccctgttgttgcaaacctcac
gi|7 : TT-TA-C-GTTTG-G-TT-CACA---CG-GAAAT-GTC----A---GCAAAGAT-----------------C-TA-C--G-CTGA-TC--------TTT-G-TTTCA-AAAA--AACTG------ATCTT----GTGTA---AT-ATTCC---A--A-GTGCCGATGCCC---AATATTT-----AC-A-----A-AGTC-ACTAGC-GA-GACATAAA-TAG-AA-ATTAC--C---GTAGCGCTTGCACA-TGCA----ATAAAA-AATG-TAGACCTT--TATTATTATAAAAACTAATCG---AATAAATGA--TCAG-TT-TGACAA---TTTG-TCAAGCAGATTTACC-ATATATACTATACCGC-TGT--AA--ACTTAACAACGTTAGTAAt
gi|8 : ATATGAATTTTT-CATATCATAAGAG---TATAACATTAGTACAGTACATATGTGAATTCTGTTGAAAGGAATCAATTTTGAACTTCAATAAACACAAAAAATTAGAGCACTCTTATCCATCTTTGATTCCATATAATTCAA-GTGGTTGCAATAACA----------GT---TT------CTTTAGATAAGACCTACGTCATACAAAAAAATTCCACTTTTAACAATAATAATTTCAATTCACTAAGATTGCT-AAAGCATTATCTAACAAATATCTGTCCAACGTTGCTTTTTTGTTGTGTCATCCCTG-GTAACCAAATT---ACACCATTtcctaaataacagaagtacatgacattctttcattgtgtgttattcagaaggacattgatgcagagctctacgtagtcgtgacgcactttctcatctgtgt
gi|9 : TTAC--C---GTAGCGCTTGCACA-TGCT----A-AATA-AATG-TAGACTTT--TACAATTATAAAACAAAATCG--TATTGAATGA--TTA--TT-TGAC-A-T-TTTG-TCAAGCAGGTTTA-C-AC----A-TATACCGCTTTT-AAAATACTTGACAACAGTAGTAAcacttt
4 sequences could not be aligned to this reference sequence:
Unaligned ( gi|13 ): ATTTGTGTATTCAGAAGGACCTGTGATGCAAAGCTCTACGTAGTCGTGACTCACTTTTTCATTGTGACGTCATAATGTGGGTGACGCATTTTTCATTGTGACGTCATAAAGCGGGAAATATACGGAGGTCATCCAGAGTTATCCCCCTGTTGTTGCTGACCTGATTAAATTA
Unaligned ( gi|15 ): AGAGCTTCTACGTAGTCGTGACGCAACTTTTTCATTGTGACGTCCATAATGTGAGTGACACACCTTTTCAATTGTGAACGCCAATAAAGTGGGAAATGTACGGAGGTACATCAGAGGTATCTCCCTGT
Unaligned ( gi|21 ): ACGAGTTATCTCCCTGTTGTCGCAAACCTGACCTTAAACAAATTTTGTAGTTTATGAAATA
Unaligned ( gi|22 ): GATACATCAAGAGTTATCTCCTTGTTGTTGCAAA
Alignments
lowQualScore : 11111111111111111111111111111111111111111111111
lowQualScore : 1 11111 22222 2222222 111 1111 1 11 111111 111 1111111111 1111 11 555555555 111 1111 222222 44444444444444 222222 111 111 1 111 1 222222 1 11 111 1 22222 1 11 111 1111 1 1 1 11111 1 1 11 3333333 1 1 11 111 3333333 11 11 111 1 2222 1 2222 1 1 2 1111 1 11 11 33 11 11 222222 11 2222 11 1 11 11 1 1 777777777777777777777777777777777777777777 111 1 1 1 11 55555555555555555555555555555555555555555555555 5555555555555 33333333333 333333 111 1 1 11 555555555555555555555555 444444444 22222 2222 111 11 1 1 1 1 1 1 111 111 11 1 1111 11 11 11 11 111 222222 11 11 11 111 11 22222 1111 111 1111 1111 22222222 11 111111 1111 111 111 33333333333333333333333333333333333333333 2222222 1111 111 111111 11 111 33333333 11
lowQualScore : 0 777777 2 2 55555 33 22222 8 6666666 444 0 8 8 1 1111 6666 6 1 7 55 6 6 999999 6 111 7777777777 6 99 4444 6 3 1 11 777777777 0 444 8 7777 333333 0 8 77777777777777 8 8 888888 777 555 1 0 777 1 0 888888 0 22 33 3 3 777 0 0 1 55555 3 3 0 3 0 2 33 666 8888 0 0 0 11 3 55555 0 0 22 0 2222222 0 0 33 777 1 2222222 0 333 7 33 33 5 5 0 777 5 1 3333 1 5 4444 1 5 1 1 1 1 3 6 6 6 8888 3 88 88 1 11 1 7 11 44 333333 7 7 88 8888 88 1 3 88 88 3 3 999999999999999999999999999999999999999999 7 7 6 777 0 0 0 33 0 2 2 99999999999999999999999999999999999999999999999 5555555555555 2 66666666666 666666 3 777 7 0 2 44 3 6 0 1 0 2 2 33 3 333333333333333333333333 3 000000000 55555 7777 777 33 0 9 0 0 0 33 0 0 2 3 777 111 33 2 2 5 8 3 8 8 88 8 77777 9999 8 0 99 1 1 0 0 11 33 8 8 0 99 11 8 8 1 999 8 333333 11 11 11 0 8 444 88 11 6 77 5 77777 5 5 2222 000 0 5 77 2 5 5 5 5 5 5 5 888 5 5 5 0000 888 0000 7777 55 5 66 5 5 33333333 66 5 77 66 666666 0 2222 000 5 000 77 5 0 44444444444444444444444444444444444444444 1 7 6 6 0000000 6 0 5 2222 55 5 5 99 555 444444 99 55 6 7 222 6 8 33333333 8 88 11
lowQualScore : . ...... . . ..... .. ..... . ....... ... . . . . .... .... . . . .. . . ...... . ... .......... . .. .... . . . .. ......... . ... . .... ...... . . .............. . . ...... ... ... . . ... . . ...... . .. .. . . ... . . . ..... . . . . . . .. ... .... . . . .. . ..... . . .. . ....... . . .. ... . ....... . ... . .. .. . . . ... . . .... . . .... . . . . . . . . . . .... . .. .. . .. . . .. .. ...... . . .. .... .. . . .. .. . . .......................................... . . . ... . . . .. . . . ............................................... ............. . ........... ...... . ... . . . .. . . . . . . . .. . ........................ . ......... ..... .... ... .. . . . . . .. . . . . ... ... .. . . . . . . . .. . ..... .... . . .. . . . . .. .. . . . .. .. . . . ... . ...... .. .. .. . . ... .. .. . .. . ..... . . .... ... . . .. . . . . . . . . ... . . . .... ... .... .... .. . .. . . ........ .. . .. .. ...... . .... ... . ... .. . . ......................................... . . . . ....... . . . .... .. . . .. ... ...... .. .. . . ... . . ........ . .. ..
lowQualScore : 7 888888 5 8 00000 55 66666 0 0000000 000 8 0 0 4 8888 7777 7 7 7 88 7 7 222222 7 777 0000000000 7 22 2222 7 8 0 00 000000000 8 000 0 0000 000000 6 0 00000000000000 0 0 888888 555 888 0 0 555 0 0 888888 0 22 88 2 2 555 0 2 0 00000 2 2 0 2 8 5 88 222 2222 0 0 0 00 2 88888 0 0 55 2 0000000 0 0 88 000 0 5555555 2 555 3 88 88 8 2 8 555 5 0 0000 0 5 5555 0 5 0 0 0 0 3 7 7 7 0000 3 33 33 0 77 0 3 00 77 333333 3 3 33 3333 33 0 3 33 33 3 3 555555555555555555555555555555555555555555 3 3 7 555 0 0 0 88 8 5 5 88888888888888888888888888888888888888888888888 0000000000000 5 22222222222 222222 2 555 0 0 5 00 2 5 2 0 0 5 5 88 2 000000000000000000000000 2 000000000 00000 0000 555 88 0 8 0 0 0 55 0 0 5 2 000 000 22 5 5 5 0 2 0 0 88 0 88888 6666 2 8 88 4 4 8 8 22 66 0 0 8 22 00 0 0 4 444 0 000000 00 00 00 8 0 000 88 00 7 99 7 99999 7 7 1111 000 1 7 99 5 7 7 7 7 0 0 0 888 0 0 0 6666 888 4444 6666 44 0 99 0 0 11111111 99 0 55 99 444444 3 1111 000 7 000 99 7 7 44444444444444444444444444444444444444444 0 3 7 7 7777777 6 7 7 1111 11 7 7 22 777 333333 22 88 7 3 555 7 0 00000000 0 88 00
consensus : NNNAAGGTAAGATTTGCGCCATTTCAATATGTAGCGAACAAGTCATGTTACATAGCAATATGTTCAG----TAGG-AATTTG-------TCTTTTAA---AAAT-GG-ACTTTTAAAA--A-AAAT-TG-TCCGT-GTTGGTTTTTTGACCACATGGG--CTTAA-TTTTGTGA-TGTTT------TGC-GTT---TTCTGGA---A---T--TTT-GCAA--TAAA----GAG-AATACTNG--CT--------GTATA---TAAAAA-CTACACA----AAGCAAACTCAC------CGGTTGG-A--------------AAGGAGATAT-AATTTTT-AA------AAGAG---TATAAC-TTANCA-AGT---TATGTNAATTG-GTTGA------TGAAATTTGAA-TTCGA--AACACAAAAAAT---AGCACTTTT-TGTATNTTTGAT-----AAAATTCAAAGTGGTTGCCATGACAACAAAAAAG-GTATATTGAACAGCTTTG--TAAGACCTACGTC--ACAAAAAAAT--CACTTTTAAC-ATAA-AATTTCAA-TCATAAAGATTAGTAAAAGCA--A-NTAA-AAATAT-TA-CCAACCCGGCT------TTGTGTT-TCCATG-GTAACC--ATT--AACATNATTTTTG-------TTGGTGCGTTTTGTCACTAGGTTTTATCATTG--TACGA--CTTTTAATGGGTGTATCG---AATATTTTCAATAACAAAATATGACTCCAACCCCGAAATGAAAAACTAGTTATATCTATTTGTCAAATATTGTNAAGTATTGCACTATCCCTCATCACCCACCCCCTCCCCNATTTATTTAAACAATTTTACTATCGAAATATATAGATCATTTAAGCTGACGGTNGATGAAGGTAAAATTATTGANTTTTTTNAAAATGATATTAAANTAGTNCGACTTTAGCCACAAAAATATAAGA-ATGAATACCTTTGG-TGTCT-ACCATAGAAATGTAATATT-TAAA--TAAATCAAGA--TTNT--CTTATNGATAGTTCATATAAGCGGGTAAGTATTATCAGTATATATATCGT--CAA----TTTCCCGGCACGT--TTTNCAC-GCTCCC--GTTTCG--TCGT-AAATTC-TGTGTTCCATTGGCTCGATTGGCTCAAACGTCTTTAACTGTCTTTAGA-TACCACATTTTGAAATAAATTTCCTCTTTTATTCCATA---GCCT-GATGTTTAT-C-TA--CATGGTAGATAAACGACTATCACC-----------------TT---CGTAA-----------------TT-TTAGCCCAGTCAGTGAC-------------GGCTCGA------ACG--GGGGGGGGGGGGGGGG--CGTAAAGTTAGT---AAAAT-GACACTTCGTAAATTGTTTTATGTCCCCAANA-TCCACGCCGTTA--TACATATTCC----T---------TAG----AC-CAACAAAATTAAGA---------ATATT-----TTAAAA--A-TAT---AT--ACTGG-AGAAAATAA-C-TTGTTTGATCTTACGTG-ATCATATTA-GTCGTG-CGACATGATCCACGTATTTCAACATGTC--AAAATTCATGCTACA-T-AA-ATGGCTTCAGCACAAGTCAGTAGATAGA-TGCCATACCATTG-AAA-ATA-TAA-GTAATTAAAGAGG---AGGTAAAGCATATTT-AGGCCTGGTTAGGTTTATTTAAAAAAA-TGTC-TA-GGAATTAATAT--AGT-AAA-GTTCAACATT-GTA-GCTTTG------CTAATT--ATA--TGACCCGA--AATATCG-GAC---TTTTTGTCAAAT-ATGAGGA--TGCT-ATTCAAATG--CAAACA-ATG---GATC-AAT-CATAA----CAG---CACCAAAATAAATTCTACTTCCA-CTA--GCAAGATT-TA-C-GTT-G-T-TT-CACA---CG-GAA-T-GTC----A---GCAAAGATT--CATCATTCTTTTATC-TA-C--G-TCGA-TC--------TT--G-TTTAC-AAAA--AACTG------ATTTT----GTGTA---AT-ATTCC---A--A-GTGCCGATGCCC---AAT---T-----AC-A-----A-AGTC-AC---C-GC-GACATAAAATAG-AA-ATTAC--C--AGTAGCGCTTGCACA-TGCT----ATAAAA-AATG-TAGACTTT--TATTATTATAAAACAAAATCG--TAATAAATGA--TTA--TT-TGACAA-T-TTTG-TCAAGCAGATTTAC-AC-TATA---TATGCCGC-TGT-AAA--ACTTGACAACGGTAGTAA
Reference ( family-39 ) : NNNAAGGTAAGATTTGCGCCATTTCAATATGTAGCGAACAAGTCATGTTACATAGCAATATGTTCAG----TAGG-AATTTG-------TCTTTTAA---AAAT-GG-ACTTTTAAAA--A-AAAT-TG-TCCGT-GTTGGTTTTTTGACCACATGGG--CTTAA-TTTTGTGA-TGTTT------TGC-GTT---TTCTGGA---A---T--TTT-GCAA--TAAA----GAG-AATACTNG--CT--------GTATA---TAAAAA-CTACACA----AAGCAAACTCAC------CGGTTGG-A--------------AAGGAGATAT-AATTTTT-AA------AAGAG---TATAAC-TTANCA-AGT---TATGTNAATTG-GTTGA------TGAAATTTGAA-TTCGA--AACACAAAAAAT---AGCACTTTT-TGTATNTTTGAT-----AAAATTCAAAGTGGTTGCCATGACAACAAAAAAG-GTATATTGAACAGCTTTG--TAAGACCTACGTC--ACAAAAAAAT--CACTTTTAAC-ATAA-AATTTCAA-TCATAAAGATTAGTAAAAGCA--A-NTAA-AAATAT-TA-CCAACCCGGCT------TTGTGTT-TCCATG-GTAACC--ATT--AACATNATTTTTG-------TTGGTGCGTTTTGTCACTAGGTTTTATCATTG--TACGA--CTTTTAATGGGTGTATCG---AATATTTTCAATAACAAAATATGACTCCAACCCCGAAATGAAAAACTAGTTATATCTATTTGTCAAATATTGTNAAGTATTGCACTATCCCTCATCACCCACCCCCTCCCCNATTTATTTAAACAATTTTACTATCGAAATATATAGATCATTTAAGCTGACGGTNGATGAAGGTAAAATTATTGANTTTTTTNAAAATGATATTAAANTAGTNCGACTTTAGCCACAAAAATATAAGA-ATGAATACCTTTGG-TGTCT-ACCATAGAAATGTAATATT-TAAA--TAAATCAAGA--TTNT--CTTATNGATAGTTCATATAAGCGGGTAAGTATTATCAGTATATATATCGT--CAA----TTTCCCGGCACGT--TTTNCAC-GCTCCC--GTTTCG--TCGT-AAATTC-TGTGTTCCATTGGCTCGATTGGCTCAAACGTCTTTAACTGTCTTTAGA-TACCACATTTTGAAATAAATTTCCTCTTTTATTCCATA---GCCT-GATGTTTAT-C-TA--CATGGTAGATAAACGACTATCACC-----------------TT---CGTAA-----------------TT-TTAGCCCAGTCAGTGAC-------------GGCTCGA------ACG--GGGGGGGGGGGGGGGG--CGTAAAGTTAGT---AAAAT-GACACTTCGTAAATTGTTTTATGTCCCCAANA-TCCACGCCGTTA--TACATATTCC----T---------TAG----AC-CAACAAAATTAAGA---------ATATT-----TTAAAA--A-TAT---AT--ACTGG-AGAAAATAA-C-TTGTTTGATCTTACGTG-ATCATATTA-GTCGTG-CGACATGATCCACGTATTTCAACATGTC--AAAATTCATGCTACA-T-AA-ATGGCTTCAGCACAAGTCAGTAGATAGA-TGCCATACCATTG-AAA-ATA-TAA-GTAATTAAAGAGG---AGGTAAAGCATATTT-AGGCCTGGTTAGGTTTATTTAAAAAAA-TGTC-TA-GGAATTAATAT--AGT-AAA-GTTCAACATT-GTA-GCTTTG------CTAATT--ATA--TGACCCGA--AATATCG-GAC---TTTTTGTCAAAT-ATGAGGA--TGCT-ATTCAAATG--CAAACA-ATG---GATC-AAT-CATAA----CAG---CACCAAAATAAATTCTACTTCCA-CTA--GCAAGATT-TA-C-GTT-G-T-TT-CACA---CG-GAA-T-GTC----A---GCAAAGATT--CATCATTCTTTTATC-TA-C--G-TCGA-TC--------TT--G-TTTAC-AAAA--AACTG------ATTTT----GTGTA---AT-ATTCC---A--A-GTGCCGATGCCC---AAT---T-----AC-A-----A-AGTC-AC---C-GC-GACATAAAATAG-AA-ATTAC--C--AGTAGCGCTTGCACA-TGCT----ATAAAA-AATG-TAGACTTT--TATTATTATAAAACAAAATCG--TAATAAATGA--TTA--TT-TGACAA-T-TTTG-TCAAGCAGATTTAC-AC-TATA---TATGCCGC-TGT-AAA--ACTTGACAACGGTAGTAA
gi|1 : AAGGTAAGATTTGCACCATTTCAATA-ATAGCAAACAAGTCATGTTACATAGAAATGTGTTCAG----TAGG-AATTTG-------TCTTTTAA---AAAT-CG-ACTTTAAAAA--G-AAAT-TG-CCCGT-ATTGGTTTT--GACCACATGGG--CTTAA-TTT-GTGA-TGTTT------TGC-GTT---TTCTGGA---A---T--TTT-CTAC--TAAA----GAG-AATACTAG--CT---------TATA---TAAAAA-CTACGCA----AAGCAAACTTAC------CGGGTGG-A--------------AAGGAGATAT-AATTTTT-AA------AAGAG---TATAAC-TTAACA-AGT---TATGTTGATTG-GTTGA------TGAAATTTGAA-TTTGA--AACACAAAAAAT---AGCACTTTT-TGTATATATGAT-----AAAATTCAAAGTGGTTGCCATGACAACAAAAAAGTGTATATTGAACAGCTTTG--TAAGACCTACGCC--ACAAAAAATT--CATTTTTAAC-ATAA-AATTTCAA-TCATAGAGATTAGTAAAAGCA--A-ATAA-AAATAT-TA--CAATCGGTCT------TTGTGTT-TCCATG-GTAACC--ATT--AACATTATTTTTA-------TTGGTGCGCTTTGTCACTAAGTTTTATCATTG--TACAA--CTTTTAATGGGT-TATTG---AATATTTTCAGTAACAAAATATGACTCCAACCCCGAAATGAAAAACTAGGTATATCTATTTGTCAAATATTGTGAAGTATTACACTATCCCTCATCACCCACCCCCTCCCCGATTTATTTAAACAATTTTACTATCGAAATATATAGATC----AAGCTGACGGTAGATGAAGGTAAAA-TATTGAATTTTTTAAAAATGATATTAAAATAGTACGACTTTAGCCACAAACATATAAGATAT-AATACCTTT-G-TG--------TAAAAATGTAATATT-TAAA--TAAATCAAGG--TTCT--CTTATCGATAGGGCA-ATAAGCGGGTACGTATTATCAGTATATATATTGT--CAA----TTTCCTAGTACGT--TTTCCAC-GCTACC--GTTTCG--TCGT-AAATTC-TGTGTT
gi|1 : tttTGTTTTTAAAATACCACATTT-GAAATAGATTTCCTCTTTTATTCCATA---GCCT-AATGTTTAT-C-TA--CATGATAGATAAACGACTATCACC-----------------TT---CGTA------------------TT-TTAGCCCAGTCAGTGAC-------------GGCTCGA------AAA--GAGGGGGGGGGGG-------TAAAGTTAGT---AAA-T-GACACTTCGTAGATTGTTT---ATTCCCAAAA-TCCACGCCGTTA--TACATATTCC----T---------TAG----AC-CAATAAAATTAAGA---------ATGTC-----TTAAAA----TAT---AT--ACTGG-AGTAAATAA-C-TTGTTTAATCTTACGTG-ATCATATTA-GTCGTG-CGACATGATCCACGTATTTCAACATGTC--AAAATTCATGCTACA-T-AA--TGGCTTCAGCACAAGTCAGTAGA-AGA-TGCCATACCATTG-AAA-ATA-TAAAGTAATTAAAGAGG---AGGTAAAGCATATTTTAGGCTTGGTTAGGTTTATTTCAAAAA--TGTC-TG-GGAAGTAATAT--AGT-AAA-GTTCAACATT-GTA-GCTTTG------ATAATT--ATA--TGACTCGA--AATATCG-GAC---TTTTTGTCAAAT-ATGAGGA--TACT-ATTCAAATG--CAAACA-ATGCCGGATC-AAT-CATAA----CAG---CACCAAAATAAAT-CTACTTCTA-CTATAGCAATATT-TA-C-GTT-G-T-TT-CACA---CG-GAA-T-GTC----A---GCAAAGATT--CATCATT-TTTTATC-TA-C--G-TCGA-TC--------TT--G-TTTAC-AAAA--AACTG------ATTTG----GTGCA---AT-ATTTC---A--A-GTGCCGATGCCC---AAT---T-----AC-A-----A-AGTC-AC---CGGC-GACAT-AAATAG-AA-ATTAC--C--AGTAACGCTTCCACA-TGCT----ATAAAA-AATG-TAGACTTT--TATTATTATAAAACAAAATCG--TAATAAATGA--TTA--TT-TGACAATT-TTTG-TCAAGCAGATTTAC-AC--ATA---TATGCCGC-TGT-AAA--ACTTGACAACGGTAGTAAtttaaaataccacatttgaaatagatttcctcttttattccatagcctaatgtttatctacatgatagataaacgactatcaccttcgtattttagcccagtcagtgacggctcgaaaagagggggggggggtaaagttagtaaatgacacttcgtagattgtttattcccaaaatccacgccgttatacatattccttagaccaataaaattaagaatgtcttaaaatatatactggagtaaataacttgtttaatcttacgtgatcatattagtcgtgcgacatgatccacgtatttcaacatgtcaaaattcatgctacataatggcttcagcacaagtcagtagaagatgccataccattgaaaatataaagtaattaaagaggaggtaaagcatattttaggcttggttaggtttatttcaaaaatgtctgggaagtaatatagtaaagttcaacattgtagctttgataattatatgactcgaaatatcggactttttgtcaaatatgaggatactattcaaatgcaaacaatgccggatcaatcataacagcaccaaaataaatctacttctactatagcaatatttacgttgtttcacacggaatgtcagcaaagattcatcattttttatctacgtcgatcttgtttacaaaaaactgatttggtgcaatatttcaagtgccgatgcccaattacaaagtcaccggcgacataaatagaaattaccagtaacgcttccacatgctataaaaaatgtagacttttattattataaaacaaaatcgtaataaatgattatttgacaatttttgtcaagcagatttacacatatatgccgctgtaaaacttgacaacggtagtaa
gi|10 : tttaaggtaagatttgcaccatttcaataatagcaaacaagtcatgttacatagaaatgtgttcagtaggaatttgtcttttaaaaatcgactttaaaaagaaattgcccgtattggttttgaccacatgggcttaatttgtgatgttttgcgttttctggaattttctactaaagagaatactagcttatataaaaactacgcaaagcaaacttaccgggtggaaaggagatataatttttaaaagagtataacttaacaagttatgttgattggttgatgaaatttgaatttgaaacacaaaaaatagcactttttgtatatatgataaaattcaaagtggttgccatgacaacaaaaaagtgtatattgaacagctttgtaagacctacgccacaaaaaattcatttttaacataaaatttcaatcatagagattagtaaaagcaaataaaaatattacaatcggtctttgtgtttccatggtaaccattaacattatttttattggtgcgctttgtcactaagttttatcattgtacaacttttaatgggttattgaatattttcagtaacaaaatatgactccaaccccgaaatgaaaaactaggtatatctatttgtcaaatattgtgaagtattacactatccctcatcacccaccccctccccgatttatttaaacaattttactatcgaaatatatagatcaagctgacggtagatgaaggtaaaatattgaattttttaaaaatgatattaaaatagtacgactttagccacaaacatataagatataatacctttgtgtaaaaatgtaatatttaaataaatcaaggttctcttatcgatagggcaataagcgggtacgtattatcagtatatatattgtcaatttcctagtacgttttccacgctaccgtttcgtcgtaaattctgATGTTCAGATCATAGACAATTTG-------TCCTTTACTTCAAAT-GGGACTTTTGAAATAATAAATGTC-TCCATCGTTGATTTTTTGACCACATAGGGTTTTAACTTTTATGAATGTTT------TGCTGTCATATTCTGGA---A---TACTTT-GTAA--TAAATTACGAGCAATGCTCGGCCT---------TATAGTCTAAAAAACTACCCATTTGACACAAG-TCATTATACACGGTTGG-A--------------AA-GAGATA
gi|11 : taaccaAGGTAAGATTTGCAACATTTT----TTTA---------TCATGT-----AGT------TTCAA----TAGG-AATTTACATTGTATCTTTAAA---AAATTAG-ACTTTAAATA--A-AAAT--G-CCCGT-GTCG-TTTTTTGATCAGATGGGT-CTT---TTTTGT-C-TGTTCTAGATATGC-AAC---TTTTAGATTTACACT--TTT-CCAATCTATA----CAG-AATA-TTA--CTG-------GTA-A---TAAA
gi|12 : cgttgg-T-TT-CACA---CT-AAA-T-ATC----A---GCAAACAAT--CAGCA-TCTTTTACC-TG-CAAG-CCA------------TT--G-TTTA--AAAATCAATTT------ACTTTCTCCATATACTGGT-ATTCC---A--A-ATGACAGTGCTCTTTAAT---TTAGGGGC-AGTTTCA-AGTC-AC---C-----ACATAAAATCA-AA-ATTA---C--AGTAG----TGCACA---CTAGAGACAAAA-AGTG-TAGA
gi|14 : TGTAGC-AACAAGTCATGTTA----GCAATATGTTCAG-----GGG-AATTTG-------T-TTTTAA---AA---GG-ACTTTTAAAA--G-AAAT-TGGTCCAT-GTTA----TTTGACCACATAGG--CTTAA-TTTTGTGA-TGTTT------TGC-GTT---TTCTGGA---A---C--TTCAGCAA--TAAA----AAG-A
gi|16 : ATGATTTTTGAGTTAGATTGATG----TTGTCAC--GTTTTTGTCATTAACTGTGAAGCTGTCNNNNNNNNNNNNN---NNNNNNNNNNNNTACAAAATATGACCCCAACCACGAAATGAAAAACTAGTTATATC
gi|17 : --CATACA-ATG----ATC-AAT-TATAA----CAA---CACCAAAATAAACTCT-----------------GATT-TC-C-GTT-G-T-TT-CACA---TG-GAA-C--TC----A-----------T--CATCCTTCTTTTATC-AA-C--G-TCGAGTC--------TTC-A-TTTAC-AAAA--AA
gi|18 : AAAAA-CTACACA----AAACAAACTCAC------CGGTTGGCAACTTTAACTGCCGCAAGGAGATAT-AATTTTT-
gi|19 : TTTATCATTG--TACGA--CTTTTAATGGGTGTATCGTTAAATATTTTCAATAACAAAATATGACTCg
gi|2 : AAGGTAAGGTTTGCGCCATTTCAATATGTAGCGAACAAGTCATGTTACATAGCAATATGTTCAG----GAGG-GATTTG-------TCTTTTAA---ATAT-GG-ACTTTTAAAA--A-AAAC-TG-TCCAT-GTTG-TTTTTTGACCACATGGA--CTTAA-TTTTGTGA-TGTTT------TCC-GTT---TTCTGGA---A---T--TTA-GCAA--TAAA----GAG-AAT-CCAG--CT----------ATA---TAAAAA-CTACACA----AAGCAAACTCAC------CGGTTGG-A--------------AAGGAGATAT-ATTTTTTGAA------AAGAG---TATTAG-TTATCA-AGT---TATGTGAATTG-GTTGA------TGAAATTTGAA-TTCAA--AGCACAAAA-AT---AGCACTTTC-TGTATCTTTGAT-----AAAATTCAAAGTGGTTGCCATGACAACAAAAAAG-GTATATTGAACAGCTTTG--TAAGACCTACGTC--ACAAAAAAGT--CACTTTTAAC-ATAA-AATTTCAA-TCATAAGGATTAGTAATAGCA--A-ATAA-AAATAT-TA-CCAACCCGGCT------TTGTGTT-TCCATGAATAACC--ATT--AACATTATTTTTG-------TTGGTGCATTTTGTCACTAGGTTTTATCATTG--TACAA--CTTTT-ATGGGTGTATTG---AATATTTTCAATAACAAAATATGACTCCAACCCCGAAATGAAAAACTCGTTATATCTATTTGTC-AATATTGTCAAGTATTGCACTATCCCTCAT----TACCCCCTCCCCTATTTATTTAAACAA-TTTACTATCGAAATATATAGATCATTTAAGCTGACGATCGATGAAGGTAAAATTATTGATTTTTTTTAAAATGATATTAAATTAGTCCGACTTTAGCCACAAAAATATAAGA-ATGAATACATTTGGTTGTCT-ACCATAGAAATGTAATATT-TAAA--TAAATCAAGA--TTGTTGTTTATAG-TAATTC-TATAAATG---AAGTGTTATCAGTA-AT-TATCGC--CAA----TTTTCCGGCAGGT--TTTACAC-GCTCCC--GTTTCG--TCGT-AAATTC-TGTGTTTCATTGGCTCGA-----------------AACTGTCTTTAGA-TACCACA-TTTGAAATAAATTTCCTCTTTTATTCCATA---GCCT-GATGTTTAA-C-TA--CATGACAGATAAACGACTATCACC-----------------AT---CGCAAACAAAACAATGTTGCATTT-TTAGCCAAGTCATTGAC-------------GGCTCAA------A-G--GGGGGGGGGGGGG------GTAAAGCTAGT---AAAAT-AACACTTTGTAAATTGTTTTATGTCCCCAACA-TCCACGCCGTTA--TGAATACTCCTAAAT---------TAG----AC-TAACAAAATTAAGA---------ATATT-----TTAAAA--A-TAG---AT--ACTGG-AAAAAATAA-CTTTGTTTGATCTTACGTG-ATCATATTA-GTCGTG-CGACATGATCCATGTATTTCAACATGTC--AAAATTCATGCAACA-T-AA-ATAGCTTCAGTACAAGTCAGTAGA-AGA-TGCCATACCATTGAAAA-ATATTAA-GTAATAAAA---G---AGGTAAAGCATATTT-AGGCCTAGCTAGGTTTATTT-CAAAAA-TGTC-TA-GG----AATGT--AGTAAAA-GTTCTACA-T-GTA-GCTTTG------CTAATT--ATA--TAACCCGA--AATATCG-GAC---TTTTTGTCAAAT-ATGAGGA--TGCT-ATTCAAATG--CAAACA-AT----GATC-AAT-CATAA----CAG---TACCAAAATAAATTCTACTTCCA-CTA--GCAAGATT-TA-C-GTT-G-T-TT-CACA---TG-G-A-T-GTC----A---GCAAAGA--------------TTATC-TA-C--A-TCGA-TCTTTGACAATT--G-TTTACAAAAA--AACTG------ATCTT----GTGTA---AT-ATTCC---A--A-GTGCCGATGCCC---AAT---
gi|20 : -ATTCAAATG--CAAACA-ATG----ATC-AAT-CATAATTAGCAG---CACCAAAATAAATTCTACTTCCA-CTA--
gi|3 : CAAAAATATAAGA-ATGAATACCTTTGGATGTCTTACCATAGAAATGTTATATTGTAAGATTAAATCAAAAATTTTTA-CTTAGTAAT--TTCATATA----GATGAGTATTATCACCATATATATCGTTACAAAAGTTTCCCCGGCACGTAATTTTTACAGCTCCCAGGTTTCGGTTCGCCAAATTCCTGTGTTC-------TC-ATTGGCTCAAACGTCTTTAA----------A-TACCACATTTTGAAATTAATTTCCT-TTTTATTCCATA---GCCTTGATGTTTATACATA--CATGGGACATACAC--CTATCGGCGAAAACAAAAAACAAGGTTGGATGTAA-----------------TTGTTAGCCCAGTCAGTGACACTCACAAAAACAGGCCAGA------ACGCCGGGGGGGAGGAAGGGG--CGTAAAGTTAGTTAAAAAGTAGACACTTCGTAAATTCTTTTATGTCCCCAAAACTCCACGCCGTTAAGTACATATTCC----TAAAAAATAATAAGAAAACACAACAAAGTGAAGAGAGTGAATAATACTAATAATGAAAAGAA-TATTGAATGAACTGGTAGAAAATAAAC-TTGTTTGATCTTACGTGCATTCTATTATATGGTAACGA--TGATCCACATATTTCAACATGTCCCAAAATTCATGCTACAAT-AATATGGCCTCAGCACAAGTCA--AGATGGAGTGCCTTACCATTG-AAA-TTA-TAG-CTAATTAAAGAGG----------GTAT-TTC-AAGCATAGTTAGGTTTATTTAAAAAAAATGTCGTAAGGAATCAATATGTAGT-AAA-ATAAAATGTTCGTACGCAATGTAAAGACTAATT--ATG--AGACCCGACAAGTATCGAGACGCTTTTTTGTCAAATGATGAGAGCCTGCT-ATTCAAATGGCTGAACATAGGT--GATAGAATGCATAA----CAAGATCACCAAGACGAATTCTAGGTCCAGCGA--G-AAGATT-TAGCAGTT-G-TGTT-CACAAAACGAGAA-TAGTCTCGTACCCGCACAGATTAGCATCGTTCTTTTATAGTAGC--G-TCGA-TC--------TTTCGCTTTAC-AAAA--AACTA------GATTT----GTGTA---AT-ATTCC---ACCATTTGCCGATGCCA---AAT---T-----ACAA-----A-AGTCAAC---T-GC-GA-AT-AAATAG-AAGATTACTTT--A-TAGTGCTTGCACATTGCT----AT--AA-AATGTTATACTTT--TATTATTAGAAAA-AGAATCGGTTAAGAAA-GA--TTAGGTTAGGACAA-TCCCTGTTCAAGCAG
gi|4 : TCCATAATTGGCT-GATGTTTAT-C-TATGCATGGTAGATAAACGA-TATCACC-----------------TT----------------------------------CAGTCAGTGAC-------------GG-TCAAATTAGCACG--GGGGAGGGGGGGGGGGGCCGT-AAGTTAGT---AAAAT-GG-ACTTCGT--GTTGTTTTAT------AACA-T-CACG-CGTTA--TAC--ATTTC----T---------TAG----A--CAAC-AAATTAGAA---------ATATT-----TTAAAA--ATTAT---AT--ACTGG-AG-TAATAA-C-TTGTTTGATCTTACGTG-A-AATAGTA-GTCGTG-CGACATGATCCACGTATTTC-ACATGTC----AATTCATGCTACA-TAAA-ATGGATTGAGCA-AAGTCAGTAGATAGA-TG-CATACCATTG-AAA-ATA-TAA-TTAATT--AGAGG---CGGTAAAG-ATATTTAAGGTCTGGTTAGG-TTATTTAAAAAAA-TGTC-TG-GGAATTGATAT--GTT-AAA-GTTCAACA-T-GTA-GCTTTA------TTAATTAAATATTTGA-TCGA--AAT-TCG-AAC---TTTTTGTCAAAT-ATGAGGA--TAATAATTC--------------------GATC--AT-CATAA-----AG---CACCAAAA-AA--TCTACTTCCA-CTA--GCAATATTCTA-C-GTT-GTT-TT-CACA---CG-GAA-T-GTC----A---GCAAAGATT--CATCATTATTTTATC-TA-T--GATCGA-TC--------TT--G-T------AAA--AACTGTGGGGCGGTTG----GTGCA---ATAATTTC---A--A-GTG-CGATGCTC---AA----G-----AC-A-----AGAGTC--C---G-GCGGACATAAAATAGAAA-ATTAC--CGTAGCGGCGCTTCCA-A-TGCT----AT---G-AATT-TAGACTTTTATATTATTAT-CAAC-AAATCG--TATAAAATGGGTTTA--TT-TGAC-A-T-TTTG-TC-AGCAGATTTACTACGTATAG--TATGCCG--TGTAAAA--ACTTGACAACGGTA
gi|5 : A-TGTCATACCATTG-AAATATA--AA-GTAATTA----GGTTTATCTAAAAAAAATT-----CTTTGTT---TTTTTTTA-------TGTA-TA-GGAAT----AT--AGT-AAAAGTTCTACAT--GTA-GCTTTG------CTAAAT--ATA--TGACCCGA--AATATCG-GAC---TTTTTGTCAAA--ATGAGGA--TGCT-ATTCATATG--CAAACA-ATG----ATC-AAT-CATAA----CAG---CACCAAAATAAATTCTACTTCCA-CTA--GCAAGATT-TA-C-GTT-G-T-TTTCACA---CG-GAA-T-GTC----A---GCAAAGATT--CATCATTCTTTTATC--A-C--G-TCGA-TCT-------TT--G-TTTAC-AAAA--AACTG------ATTTT----GTGTA---AT-ATTCCAGAA--A-TTACCGGAGCGC-----T---T-----GC-A-----------------C-AT-GCTATAAAA-AA-AA-AT---------GTAG-ACTTTTAT--TATT----ATAAAACAA-----------------ATCGTAAA---------------AAATGA--TTA--TT-TGACAA-T-TTTG-TCAAGCAGATTTAC-AC--ATA---TATGCTGC-TGT-AAA--ACTTAACAACGGTAGTAAagttagtaagcctaaaatattagcaagtacatgaattcttcatttgacattgtggtgggagagcatctacgtagtcgtgagcactttttcattgtgacgtcatatgtgggtgagcacttttgtcattgtgacgtcataagtgggaaatgtcggaagtactcagaggttatctccctgtttgtttgaacgctgacctt
gi|6 : AAAA--A-AAAT-TG-TCCGT-GT-GGTTTTTTGACCAGACGGG--TTTAA-TTTTGTGA-TGTTA------TGC-ATT---TTCTGGA---A---T--TTT-GTAA---AAA----GAA-AACACTTG--CTATATTCATGTATA---TAAAAA-CTACACA----CGGCAAACTTAC------TGGGTGA-A--------------AAGGTGATAT-AGTTTTA-AA------AAGAGTTATATA----TATTA-AGT---TCTGCCATTTG-GTAGA------TGAAATTTGAG-TTAAA--AACAC-AAAAAT---AACATTTTT-TATACATTTGAT-----CAAAGTGAAAGTGGTTGTCATGACAACAAAAAAG-GCATGTTGAACAGCTTTG--TAAGACCTACGT-----AAAAAAA---CATTTTTAAC-ATGA-AATTGAGA-TGATAAAGATTCATAAAAGCA--A-CTAA-AAGGAC-TA-CCAACCCGGCT---------TGTT-TCGATA-GTAACC--AATACAAAATAGTTTATG-------TCTCTTCGTTTTATCAgcctaaataacaacttcatttgtgtattcagaaagacctgtgatgcagagctctacgtagtcgtgacacactttttctatgtgacgtataatgtgggaatgtacggaggtacatccagagttatctccctgttgttgcaaacctcac
gi|7 : TT-TA-C-GTTTG-G-TT-CACA---CG-GAAAT-GTC----A---GCAAAGAT-----------------C-TA-C--G-CTGA-TC--------TTT-G-TTTCA-AAAA--AACTG------ATCTT----GTGTA---AT-ATTCC---A--A-GTGCCGATGCCC---AATATTT-----AC-A-----A-AGTC-ACTAGC-GA-GACATAAA-TAG-AA-ATTAC--C---GTAGCGCTTGCACA-TGCA----ATAAAA-AATG-TAGACCTT--TATTATTATAAAAACTAATCG---AATAAATGA--TCAG-TT-TGACAA---TTTG-TCAAGCAGATTTAC-CA-TATATACTATACCGC-TGT--AA--ACTTAACAACGTTAGTAAt
gi|8 : ATATGAATTTTT-CATATCATAAGAG---TATAACATTAGTACAGTACATATGTGAATTCTGTTGAAAGGAATCAATTTTGAACTTCAATAAACACAAAAAATTAGAGCACTCTTATCCATCTTTGATTCCATATAATTCAA-GTGGTTGCAATAACA----------GT---TT------CTTTAGATAAGACCTACGTCATACAAAAAAATTCCACTTTTAACAATAATAATTTCAATTCACTAAGATTGCT-AAAGCATTATCTAACAAATATCTGTCCAACGTTGCTTTTTTGTTGTGTCATCCCTG-GTAACCAAATT---ACACCATTtcctaaataacagaagtacatgacattctttcattgtgtgttattcagaaggacattgatgcagagctctacgtagtcgtgacgcactttctcatctgtgt
gi|9 : TTAC--C---GTAGCGCTTGCACA-TGCT----A-AATA-AATG-TAGACTTT--TACAATTATAAAACAAAATCG--TATTGAATGA--TTA--TT-TGAC-A-T-TTTG-TCAAGCAGGTTTAC-AC----A---TATACCGCTTTT-AAAATACTTGACAACAGTAGTAAcacttt
4 sequences could not be aligned to this reference sequence:
Unaligned ( gi|13 ): ATTTGTGTATTCAGAAGGACCTGTGATGCAAAGCTCTACGTAGTCGTGACTCACTTTTTCATTGTGACGTCATAATGTGGGTGACGCATTTTTCATTGTGACGTCATAAAGCGGGAAATATACGGAGGTCATCCAGAGTTATCCCCCTGTTGTTGCTGACCTGATTAAATTA
Unaligned ( gi|15 ): AGAGCTTCTACGTAGTCGTGACGCAACTTTTTCATTGTGACGTCCATAATGTGAGTGACACACCTTTTCAATTGTGAACGCCAATAAAGTGGGAAATGTACGGAGGTACATCAGAGGTATCTCCCTGT
Unaligned ( gi|21 ): ACGAGTTATCTCCCTGTTGTCGCAAACCTGACCTTAAACAAATTTTGTAGTTTATGAAATA
Unaligned ( gi|22 ): GATACATCAAGAGTTATCTCCTTGTTGTTGCAAA
Alignments
lowQualScore : 11111111111111111111111111111111111111111111111
lowQualScore : 1 11111 22222 2222222 111 1111 1 11 111111 111 1111111111 1111 11 555555555 111 1111 222222 44444444444444 222222 111 111 1 111 1 222222 1 11 111 1 22222 1 11 111 1111 1 1 1 11111 1 1 11 3333333 1 1 11 111 3333333 11 11 111 1 2222 1 2222 1 1 2 1111 1 11 11 33 11 11 222222 11 2222 11 1 11 11 1 1 777777777777777777777777777777777777777777 111 1 1 1 11 55555555555555555555555555555555555555555555555 5555555555555 33333333333 333333 111 1 1 11 555555555555555555555555 444444444 22222 2222 111 11 1 1 1 1 1 1 111 111 11 1 1111 11 11 11 11 111 222222 11 11 11 111 11 22222 1111 111 1111 1111 22222222 11 111111 1111 111 111 33333333333333333333333333333333333333333 2222222 1111 111 111111 11 111 33333333 11
lowQualScore : 0 777777 2 2 55555 33 22222 8 6666666 444 0 8 8 1 1111 6666 6 1 7 55 6 6 999999 6 111 7777777777 6 99 4444 6 3 1 11 777777777 0 444 8 7777 333333 0 8 77777777777777 8 8 888888 777 555 1 0 777 1 0 888888 0 22 33 3 3 777 0 0 1 55555 3 3 0 3 0 2 33 666 8888 0 0 0 11 3 55555 0 0 22 0 2222222 0 0 33 777 1 2222222 0 333 7 33 33 5 5 0 777 5 1 3333 1 5 4444 1 5 1 1 1 1 3 6 6 6 8888 3 88 88 1 11 1 7 11 44 333333 7 7 88 8888 88 1 3 88 88 3 3 999999999999999999999999999999999999999999 7 7 6 777 0 0 0 33 0 2 2 99999999999999999999999999999999999999999999999 5555555555555 2 66666666666 666666 3 777 7 0 2 44 3 6 0 1 0 2 2 33 3 333333333333333333333333 3 000000000 55555 7777 777 33 0 9 0 0 0 33 0 0 2 3 777 111 33 2 2 5 8 3 8 8 88 8 77777 9999 8 0 99 1 1 0 0 11 33 8 8 0 99 11 8 8 1 999 8 333333 11 11 11 0 8 444 88 11 6 77 5 77777 5 5 2222 000 0 5 77 2 5 5 5 5 5 5 5 888 5 5 5 0000 888 0000 7777 55 5 66 5 5 33333333 66 5 77 66 666666 0 2222 000 5 000 77 5 0 44444444444444444444444444444444444444444 1 7 6 6 0000000 6 0 5 2222 55 5 5 99 555 444444 99 55 6 7 222 6 8 33333333 8 88 11
lowQualScore : . ...... . . ..... .. ..... . ....... ... . . . . .... .... . . . .. . . ...... . ... .......... . .. .... . . . .. ......... . ... . .... ...... . . .............. . . ...... ... ... . . ... . . ...... . .. .. . . ... . . . ..... . . . . . . .. ... .... . . . .. . ..... . . .. . ....... . . .. ... . ....... . ... . .. .. . . . ... . . .... . . .... . . . . . . . . . . .... . .. .. . .. . . .. .. ...... . . .. .... .. . . .. .. . . .......................................... . . . ... . . . .. . . . ............................................... ............. . ........... ...... . ... . . . .. . . . . . . . .. . ........................ . ......... ..... .... ... .. . . . . . .. . . . . ... ... .. . . . . . . . .. . ..... .... . . .. . . . . .. .. . . . .. .. . . . ... . ...... .. .. .. . . ... .. .. . .. . ..... . . .... ... . . .. . . . . . . . . ... . . . .... ... .... .... .. . .. . . ........ .. . .. .. ...... . .... ... . ... .. . . ......................................... . . . . ....... . . . .... .. . . .. ... ...... .. .. . . ... . . ........ . .. ..
lowQualScore : 7 888888 5 8 00000 55 66666 0 0000000 000 8 0 0 4 8888 7777 7 7 7 88 7 7 222222 7 777 0000000000 7 22 2222 7 8 0 00 000000000 8 000 0 0000 000000 6 0 00000000000000 0 0 888888 555 888 0 0 555 0 0 888888 0 22 88 2 2 555 0 2 0 00000 2 2 0 2 8 5 88 222 2222 0 0 0 00 2 88888 0 0 55 2 0000000 0 0 88 000 0 5555555 2 555 3 88 88 8 2 8 555 5 0 0000 0 5 5555 0 5 0 0 0 0 3 7 7 7 0000 3 33 33 0 77 0 3 00 77 333333 3 3 33 3333 33 0 3 33 33 3 3 555555555555555555555555555555555555555555 3 3 7 555 0 0 0 88 8 5 5 88888888888888888888888888888888888888888888888 0000000000000 5 22222222222 222222 2 555 0 0 5 00 2 5 2 0 0 5 5 88 2 000000000000000000000000 2 000000000 00000 0000 555 88 0 8 0 0 0 55 0 0 5 2 000 000 22 5 5 5 0 2 0 0 88 0 88888 6666 2 8 88 4 4 8 8 22 66 0 0 8 22 00 0 0 4 444 0 000000 00 00 00 8 0 000 88 00 7 99 7 99999 7 7 1111 000 1 7 99 5 7 7 7 7 0 0 0 888 0 0 0 6666 888 4444 6666 44 0 99 0 0 11111111 99 0 55 99 444444 3 1111 000 7 000 99 7 7 44444444444444444444444444444444444444444 0 3 7 7 7777777 6 7 7 1111 11 7 7 22 777 333333 22 88 7 3 555 7 0 00000000 0 88 00
consensus : NNNAAGGTAAGATTTGCGCCATTTCAATATGTAGCGAACAAGTCATGTTACATAGCAATATGTTCAG----TAGG-AATTTG-------TCTTTTAA---AAAT-GG-ACTTTTAAAA--A-AAAT-TG-TCCGT-GTTGGTTTTTTGACCACATGGG--CTTAA-TTTTGTGA-TGTTT------TGC-GTT---TTCTGGA---A---T--TTT-GCAA--TAAA----GAG-AATACTNG--CT--------GTATA---TAAAAA-CTACACA----AAGCAAACTCAC------CGGTTGG-A--------------AAGGAGATAT-AATTTTT-AA------AAGAG---TATAAC-TTANCA-AGT---TATGTNAATTG-GTTGA------TGAAATTTGAA-TTCGA--AACACAAAAAAT---AGCACTTTT-TGTATNTTTGAT-----AAAATTCAAAGTGGTTGCCATGACAACAAAAAAG-GTATATTGAACAGCTTTG--TAAGACCTACGTC--ACAAAAAAAT--CACTTTTAAC-ATAA-AATTTCAA-TCATAAAGATTAGTAAAAGCA--A-NTAA-AAATAT-TA-CCAACCCGGCT------TTGTGTT-TCCATG-GTAACC--ATT--AACATNATTTTTG-------TTGGTGCGTTTTGTCACTAGGTTTTATCATTG--TACGA--CTTTTAATGGGTGTATCG---AATATTTTCAATAACAAAATATGACTCCAACCCCGAAATGAAAAACTAGTTATATCTATTTGTCAAATATTGTNAAGTATTGCACTATCCCTCATCACCCACCCCCTCCCCNATTTATTTAAACAATTTTACTATCGAAATATATAGATCATTTAAGCTGACGGTNGATGAAGGTAAAATTATTGANTTTTTTNAAAATGATATTAAANTAGTNCGACTTTAGCCACAAAAATATAAGA-ATGAATACCTTTGG-TGTCT-ACCATAGAAATGTAATATT-TAAA--TAAATCAAGA--TTNT--CTTATNGATAGTTCATATAAGCGGGTAAGTATTATCAGTATATATATCGT--CAA----TTTCCCGGCACGT--TTTNCAC-GCTCCC--GTTTCG--TCGT-AAATTC-TGTGTTCCATTGGCTCGATTGGCTCAAACGTCTTTAACTGTCTTTAGA-TACCACATTTTGAAATAAATTTCCTCTTTTATTCCATA---GCCT-GATGTTTAT-C-TA--CATGGTAGATAAACGACTATCACC-----------------TT---CGTAA-----------------TT-TTAGCCCAGTCAGTGAC-------------GGCTCGA------ACG--GGGGGGGGGGGGGGGG--CGTAAAGTTAGT---AAAAT-GACACTTCGTAAATTGTTTTATGTCCCCAANA-TCCACGCCGTTA--TACATATTCC----T---------TAG----AC-CAACAAAATTAAGA---------ATATT-----TTAAAA--A-TAT---AT--ACTGG-AGAAAATAA-C-TTGTTTGATCTTACGTG-ATCATATTA-GTCGTG-CGACATGATCCACGTATTTCAACATGTC--AAAATTCATGCTACA-T-AA-ATGGCTTCAGCACAAGTCAGTAGATAGA-TGCCATACCATTG-AAA-ATA-TAA-GTAATTAAAGAGG---AGGTAAAGCATATTT-AGGCCTGGTTAGGTTTATTTAAAAAAA-TGTC-TA-GGAATTAATAT--AGT-AAA-GTTCAACATT-GTA-GCTTTG------CTAATT--ATA--TGACCCGA--AATATCG-GAC---TTTTTGTCAAAT-ATGAGGA--TGCT-ATTCAAATG--CAAACA-ATG---GATC-AAT-CATAA----CAG---CACCAAAATAAATTCTACTTCCA-CTA--GCAAGATT-TA-C-GTT-G-T-TT-CACA---CG-GAA-T-GTC----A---GCAAAGATT--CATCATTCTTTTATC-TA-C--G-TCGA-TC--------TT--G-TTTAC-AAAA--AACTG------ATTTT----GTGTA---AT-ATTCC---A--A-GTGCCGATGCCC---AAT---T-----AC-A-----A-AGTC-AC---C-GC-GACATAAAATAG-AA-ATTAC--C--AGTAGCGCTTGCACA-TGCT----ATAAAA-AATG-TAGACTTT--TATTATTATAAAACAAAATCG--TAATAAATGA--TTA--TT-TGACAA-T-TTTG-TCAAGCAGATTTAC-AC-TATA---TATGCCGC-TGT-AAA--ACTTGACAACGGTAGTAA
Reference ( family-39 ) : NNNAAGGTAAGATTTGCGCCATTTCAATATGTAGCGAACAAGTCATGTTACATAGCAATATGTTCAG----TAGG-AATTTG-------TCTTTTAA---AAAT-GG-ACTTTTAAAA--A-AAAT-TG-TCCGT-GTTGGTTTTTTGACCACATGGG--CTTAA-TTTTGTGA-TGTTT------TGC-GTT---TTCTGGA---A---T--TTT-GCAA--TAAA----GAG-AATACTNG--CT--------GTATA---TAAAAA-CTACACA----AAGCAAACTCAC------CGGTTGG-A--------------AAGGAGATAT-AATTTTT-AA------AAGAG---TATAAC-TTANCA-AGT---TATGTNAATTG-GTTGA------TGAAATTTGAA-TTCGA--AACACAAAAAAT---AGCACTTTT-TGTATNTTTGAT-----AAAATTCAAAGTGGTTGCCATGACAACAAAAAAG-GTATATTGAACAGCTTTG--TAAGACCTACGTC--ACAAAAAAAT--CACTTTTAAC-ATAA-AATTTCAA-TCATAAAGATTAGTAAAAGCA--A-NTAA-AAATAT-TA-CCAACCCGGCT------TTGTGTT-TCCATG-GTAACC--ATT--AACATNATTTTTG-------TTGGTGCGTTTTGTCACTAGGTTTTATCATTG--TACGA--CTTTTAATGGGTGTATCG---AATATTTTCAATAACAAAATATGACTCCAACCCCGAAATGAAAAACTAGTTATATCTATTTGTCAAATATTGTNAAGTATTGCACTATCCCTCATCACCCACCCCCTCCCCNATTTATTTAAACAATTTTACTATCGAAATATATAGATCATTTAAGCTGACGGTNGATGAAGGTAAAATTATTGANTTTTTTNAAAATGATATTAAANTAGTNCGACTTTAGCCACAAAAATATAAGA-ATGAATACCTTTGG-TGTCT-ACCATAGAAATGTAATATT-TAAA--TAAATCAAGA--TTNT--CTTATNGATAGTTCATATAAGCGGGTAAGTATTATCAGTATATATATCGT--CAA----TTTCCCGGCACGT--TTTNCAC-GCTCCC--GTTTCG--TCGT-AAATTC-TGTGTTCCATTGGCTCGATTGGCTCAAACGTCTTTAACTGTCTTTAGA-TACCACATTTTGAAATAAATTTCCTCTTTTATTCCATA---GCCT-GATGTTTAT-C-TA--CATGGTAGATAAACGACTATCACC-----------------TT---CGTAA-----------------TT-TTAGCCCAGTCAGTGAC-------------GGCTCGA------ACG--GGGGGGGGGGGGGGGG--CGTAAAGTTAGT---AAAAT-GACACTTCGTAAATTGTTTTATGTCCCCAANA-TCCACGCCGTTA--TACATATTCC----T---------TAG----AC-CAACAAAATTAAGA---------ATATT-----TTAAAA--A-TAT---AT--ACTGG-AGAAAATAA-C-TTGTTTGATCTTACGTG-ATCATATTA-GTCGTG-CGACATGATCCACGTATTTCAACATGTC--AAAATTCATGCTACA-T-AA-ATGGCTTCAGCACAAGTCAGTAGATAGA-TGCCATACCATTG-AAA-ATA-TAA-GTAATTAAAGAGG---AGGTAAAGCATATTT-AGGCCTGGTTAGGTTTATTTAAAAAAA-TGTC-TA-GGAATTAATAT--AGT-AAA-GTTCAACATT-GTA-GCTTTG------CTAATT--ATA--TGACCCGA--AATATCG-GAC---TTTTTGTCAAAT-ATGAGGA--TGCT-ATTCAAATG--CAAACA-ATG---GATC-AAT-CATAA----CAG---CACCAAAATAAATTCTACTTCCA-CTA--GCAAGATT-TA-C-GTT-G-T-TT-CACA---CG-GAA-T-GTC----A---GCAAAGATT--CATCATTCTTTTATC-TA-C--G-TCGA-TC--------TT--G-TTTAC-AAAA--AACTG------ATTTT----GTGTA---AT-ATTCC---A--A-GTGCCGATGCCC---AAT---T-----AC-A-----A-AGTC-AC---C-GC-GACATAAAATAG-AA-ATTAC--C--AGTAGCGCTTGCACA-TGCT----ATAAAA-AATG-TAGACTTT--TATTATTATAAAACAAAATCG--TAATAAATGA--TTA--TT-TGACAA-T-TTTG-TCAAGCAGATTTAC-AC-TATA---TATGCCGC-TGT-AAA--ACTTGACAACGGTAGTAA
gi|1 : AAGGTAAGATTTGCACCATTTCAATA-ATAGCAAACAAGTCATGTTACATAGAAATGTGTTCAG----TAGG-AATTTG-------TCTTTTAA---AAAT-CG-ACTTTAAAAA--G-AAAT-TG-CCCGT-ATTGGTTTT--GACCACATGGG--CTTAA-TTT-GTGA-TGTTT------TGC-GTT---TTCTGGA---A---T--TTT-CTAC--TAAA----GAG-AATACTAG--CT---------TATA---TAAAAA-CTACGCA----AAGCAAACTTAC------CGGGTGG-A--------------AAGGAGATAT-AATTTTT-AA------AAGAG---TATAAC-TTAACA-AGT---TATGTTGATTG-GTTGA------TGAAATTTGAA-TTTGA--AACACAAAAAAT---AGCACTTTT-TGTATATATGAT-----AAAATTCAAAGTGGTTGCCATGACAACAAAAAAGTGTATATTGAACAGCTTTG--TAAGACCTACGCC--ACAAAAAATT--CATTTTTAAC-ATAA-AATTTCAA-TCATAGAGATTAGTAAAAGCA--A-ATAA-AAATAT-TA--CAATCGGTCT------TTGTGTT-TCCATG-GTAACC--ATT--AACATTATTTTTA-------TTGGTGCGCTTTGTCACTAAGTTTTATCATTG--TACAA--CTTTTAATGGGT-TATTG---AATATTTTCAGTAACAAAATATGACTCCAACCCCGAAATGAAAAACTAGGTATATCTATTTGTCAAATATTGTGAAGTATTACACTATCCCTCATCACCCACCCCCTCCCCGATTTATTTAAACAATTTTACTATCGAAATATATAGATC----AAGCTGACGGTAGATGAAGGTAAAA-TATTGAATTTTTTAAAAATGATATTAAAATAGTACGACTTTAGCCACAAACATATAAGATAT-AATACCTTT-G-TG--------TAAAAATGTAATATT-TAAA--TAAATCAAGG--TTCT--CTTATCGATAGGGCA-ATAAGCGGGTACGTATTATCAGTATATATATTGT--CAA----TTTCCTAGTACGT--TTTCCAC-GCTACC--GTTTCG--TCGT-AAATTC-TGTGTT
gi|1 : tttTGTTTTTAAAATACCACATTT-GAAATAGATTTCCTCTTTTATTCCATA---GCCT-AATGTTTAT-C-TA--CATGATAGATAAACGACTATCACC-----------------TT---CGTA------------------TT-TTAGCCCAGTCAGTGAC-------------GGCTCGA------AAA--GAGGGGGGGGGGG-------TAAAGTTAGT---AAA-T-GACACTTCGTAGATTGTTT---ATTCCCAAAA-TCCACGCCGTTA--TACATATTCC----T---------TAG----AC-CAATAAAATTAAGA---------ATGTC-----TTAAAA----TAT---AT--ACTGG-AGTAAATAA-C-TTGTTTAATCTTACGTG-ATCATATTA-GTCGTG-CGACATGATCCACGTATTTCAACATGTC--AAAATTCATGCTACA-T-AA--TGGCTTCAGCACAAGTCAGTAGA-AGA-TGCCATACCATTG-AAA-ATA-TAAAGTAATTAAAGAGG---AGGTAAAGCATATTTTAGGCTTGGTTAGGTTTATTTCAAAAA--TGTC-TG-GGAAGTAATAT--AGT-AAA-GTTCAACATT-GTA-GCTTTG------ATAATT--ATA--TGACTCGA--AATATCG-GAC---TTTTTGTCAAAT-ATGAGGA--TACT-ATTCAAATG--CAAACA-ATGCCGGATC-AAT-CATAA----CAG---CACCAAAATAAAT-CTACTTCTA-CTATAGCAATATT-TA-C-GTT-G-T-TT-CACA---CG-GAA-T-GTC----A---GCAAAGATT--CATCATT-TTTTATC-TA-C--G-TCGA-TC--------TT--G-TTTAC-AAAA--AACTG------ATTTG----GTGCA---AT-ATTTC---A--A-GTGCCGATGCCC---AAT---T-----AC-A-----A-AGTC-AC---CGGC-GACAT-AAATAG-AA-ATTAC--C--AGTAACGCTTCCACA-TGCT----ATAAAA-AATG-TAGACTTT--TATTATTATAAAACAAAATCG--TAATAAATGA--TTA--TT-TGACAATT-TTTG-TCAAGCAGATTTAC-AC--ATA---TATGCCGC-TGT-AAA--ACTTGACAACGGTAGTAAtttaaaataccacatttgaaatagatttcctcttttattccatagcctaatgtttatctacatgatagataaacgactatcaccttcgtattttagcccagtcagtgacggctcgaaaagagggggggggggtaaagttagtaaatgacacttcgtagattgtttattcccaaaatccacgccgttatacatattccttagaccaataaaattaagaatgtcttaaaatatatactggagtaaataacttgtttaatcttacgtgatcatattagtcgtgcgacatgatccacgtatttcaacatgtcaaaattcatgctacataatggcttcagcacaagtcagtagaagatgccataccattgaaaatataaagtaattaaagaggaggtaaagcatattttaggcttggttaggtttatttcaaaaatgtctgggaagtaatatagtaaagttcaacattgtagctttgataattatatgactcgaaatatcggactttttgtcaaatatgaggatactattcaaatgcaaacaatgccggatcaatcataacagcaccaaaataaatctacttctactatagcaatatttacgttgtttcacacggaatgtcagcaaagattcatcattttttatctacgtcgatcttgtttacaaaaaactgatttggtgcaatatttcaagtgccgatgcccaattacaaagtcaccggcgacataaatagaaattaccagtaacgcttccacatgctataaaaaatgtagacttttattattataaaacaaaatcgtaataaatgattatttgacaatttttgtcaagcagatttacacatatatgccgctgtaaaacttgacaacggtagtaa
gi|10 : tttaaggtaagatttgcaccatttcaataatagcaaacaagtcatgttacatagaaatgtgttcagtaggaatttgtcttttaaaaatcgactttaaaaagaaattgcccgtattggttttgaccacatgggcttaatttgtgatgttttgcgttttctggaattttctactaaagagaatactagcttatataaaaactacgcaaagcaaacttaccgggtggaaaggagatataatttttaaaagagtataacttaacaagttatgttgattggttgatgaaatttgaatttgaaacacaaaaaatagcactttttgtatatatgataaaattcaaagtggttgccatgacaacaaaaaagtgtatattgaacagctttgtaagacctacgccacaaaaaattcatttttaacataaaatttcaatcatagagattagtaaaagcaaataaaaatattacaatcggtctttgtgtttccatggtaaccattaacattatttttattggtgcgctttgtcactaagttttatcattgtacaacttttaatgggttattgaatattttcagtaacaaaatatgactccaaccccgaaatgaaaaactaggtatatctatttgtcaaatattgtgaagtattacactatccctcatcacccaccccctccccgatttatttaaacaattttactatcgaaatatatagatcaagctgacggtagatgaaggtaaaatattgaattttttaaaaatgatattaaaatagtacgactttagccacaaacatataagatataatacctttgtgtaaaaatgtaatatttaaataaatcaaggttctcttatcgatagggcaataagcgggtacgtattatcagtatatatattgtcaatttcctagtacgttttccacgctaccgtttcgtcgtaaattctgATGTTCAGATCATAGACAATTTG-------TCCTTTACTTCAAAT-GGGACTTTTGAAATAATAAATGTC-TCCATCGTTGATTTTTTGACCACATAGGGTTTTAACTTTTATGAATGTTT------TGCTGTCATATTCTGGA---A---TACTTT-GTAA--TAAATTACGAGCAATGCTCGGCCT---------TATAGTCTAAAAAACTACCCATTTGACACAAG-TCATTATACACGGTTGG-A--------------AA-GAGATA
gi|11 : taaccaAGGTAAGATTTGCAACATTTT----TTTA---------TCATGT-----AGT------TTCAA----TAGG-AATTTACATTGTATCTTTAAA---AAATTAG-ACTTTAAATA--A-AAAT--G-CCCGT-GTCG-TTTTTTGATCAGATGGGT-CTT---TTTTGT-C-TGTTCTAGATATGC-AAC---TTTTAGATTTACACT--TTT-CCAATCTATA----CAG-AATA-TTA--CTG-------GTA-A---TAAA
gi|12 : cgttgg-T-TT-CACA---CT-AAA-T-ATC----A---GCAAACAAT--CAGCA-TCTTTTACC-TG-CAAG-CCA------------TT--G-TTTA--AAAATCAATTT------ACTTTCTCCATATACTGGT-ATTCC---A--A-ATGACAGTGCTCTTTAAT---TTAGGGGC-AGTTTCA-AGTC-AC---C-----ACATAAAATCA-AA-ATTA---C--AGTAG----TGCACA---CTAGAGACAAAA-AGTG-TAGA
gi|14 : TGTAGC-AACAAGTCATGTTA----GCAATATGTTCAG-----GGG-AATTTG-------T-TTTTAA---AA---GG-ACTTTTAAAA--G-AAAT-TGGTCCAT-GTTA----TTTGACCACATAGG--CTTAA-TTTTGTGA-TGTTT------TGC-GTT---TTCTGGA---A---C--TTCAGCAA--TAAA----AAG-A
gi|16 : ATGATTTTTGAGTTAGATTGATG----TTGTCAC--GTTTTTGTCATTAACTGTGAAGCTGTCNNNNNNNNNNNNN---NNNNNNNNNNNNTACAAAATATGACCCCAACCACGAAATGAAAAACTAGTTATATC
gi|17 : --CATACA-ATG----ATC-AAT-TATAA----CAA---CACCAAAATAAACTCT-----------------GATT-TC-C-GTT-G-T-TT-CACA---TG-GAA-C--TC----A-----------T--CATCCTTCTTTTATC-AA-C--G-TCGAGTC--------TTC-A-TTTAC-AAAA--AA
gi|18 : AAAAA-CTACACA----AAACAAACTCAC------CGGTTGGCAACTTTAACTGCCGCAAGGAGATAT-AATTTTT-
gi|19 : TTTATCATTG--TACGA--CTTTTAATGGGTGTATCGTTAAATATTTTCAATAACAAAATATGACTCg
gi|2 : AAGGTAAGGTTTGCGCCATTTCAATATGTAGCGAACAAGTCATGTTACATAGCAATATGTTCAG----GAGG-GATTTG-------TCTTTTAA---ATAT-GG-ACTTTTAAAA--A-AAAC-TG-TCCAT-GTTG-TTTTTTGACCACATGGA--CTTAA-TTTTGTGA-TGTTT------TCC-GTT---TTCTGGA---A---T--TTA-GCAA--TAAA----GAG-AAT-CCAG--CT----------ATA---TAAAAA-CTACACA----AAGCAAACTCAC------CGGTTGG-A--------------AAGGAGATAT-ATTTTTTGAA------AAGAG---TATTAG-TTATCA-AGT---TATGTGAATTG-GTTGA------TGAAATTTGAA-TTCAA--AGCACAAAA-AT---AGCACTTTC-TGTATCTTTGAT-----AAAATTCAAAGTGGTTGCCATGACAACAAAAAAG-GTATATTGAACAGCTTTG--TAAGACCTACGTC--ACAAAAAAGT--CACTTTTAAC-ATAA-AATTTCAA-TCATAAGGATTAGTAATAGCA--A-ATAA-AAATAT-TA-CCAACCCGGCT------TTGTGTT-TCCATGAATAACC--ATT--AACATTATTTTTG-------TTGGTGCATTTTGTCACTAGGTTTTATCATTG--TACAA--CTTTT-ATGGGTGTATTG---AATATTTTCAATAACAAAATATGACTCCAACCCCGAAATGAAAAACTCGTTATATCTATTTGTC-AATATTGTCAAGTATTGCACTATCCCTCAT----TACCCCCTCCCCTATTTATTTAAACAA-TTTACTATCGAAATATATAGATCATTTAAGCTGACGATCGATGAAGGTAAAATTATTGATTTTTTTTAAAATGATATTAAATTAGTCCGACTTTAGCCACAAAAATATAAGA-ATGAATACATTTGGTTGTCT-ACCATAGAAATGTAATATT-TAAA--TAAATCAAGA--TTGTTGTTTATAG-TAATTC-TATAAATG---AAGTGTTATCAGTA-AT-TATCGC--CAA----TTTTCCGGCAGGT--TTTACAC-GCTCCC--GTTTCG--TCGT-AAATTC-TGTGTTTCATTGGCTCGA-----------------AACTGTCTTTAGA-TACCACA-TTTGAAATAAATTTCCTCTTTTATTCCATA---GCCT-GATGTTTAA-C-TA--CATGACAGATAAACGACTATCACC-----------------AT---CGCAAACAAAACAATGTTGCATTT-TTAGCCAAGTCATTGAC-------------GGCTCAA------A-G--GGGGGGGGGGGGG------GTAAAGCTAGT---AAAAT-AACACTTTGTAAATTGTTTTATGTCCCCAACA-TCCACGCCGTTA--TGAATACTCCTAAAT---------TAG----AC-TAACAAAATTAAGA---------ATATT-----TTAAAA--A-TAG---AT--ACTGG-AAAAAATAA-CTTTGTTTGATCTTACGTG-ATCATATTA-GTCGTG-CGACATGATCCATGTATTTCAACATGTC--AAAATTCATGCAACA-T-AA-ATAGCTTCAGTACAAGTCAGTAGA-AGA-TGCCATACCATTGAAAA-ATATTAA-GTAATAAAA---G---AGGTAAAGCATATTT-AGGCCTAGCTAGGTTTATTT-CAAAAA-TGTC-TA-GG----AATGT--AGTAAAA-GTTCTACA-T-GTA-GCTTTG------CTAATT--ATA--TAACCCGA--AATATCG-GAC---TTTTTGTCAAAT-ATGAGGA--TGCT-ATTCAAATG--CAAACA-AT----GATC-AAT-CATAA----CAG---TACCAAAATAAATTCTACTTCCA-CTA--GCAAGATT-TA-C-GTT-G-T-TT-CACA---TG-G-A-T-GTC----A---GCAAAGA--------------TTATC-TA-C--A-TCGA-TCTTTGACAATT--G-TTTACAAAAA--AACTG------ATCTT----GTGTA---AT-ATTCC---A--A-GTGCCGATGCCC---AAT---
gi|20 : -ATTCAAATG--CAAACA-ATG----ATC-AAT-CATAATTAGCAG---CACCAAAATAAATTCTACTTCCA-CTA--
gi|3 : CAAAAATATAAGA-ATGAATACCTTTGGATGTCTTACCATAGAAATGTTATATTGTAAGATTAAATCAAAAATTTTTA-CTTAGTAAT--TTCATATA----GATGAGTATTATCACCATATATATCGTTACAAAAGTTTCCCCGGCACGTAATTTTTACAGCTCCCAGGTTTCGGTTCGCCAAATTCCTGTGTTC-------TC-ATTGGCTCAAACGTCTTTAA----------A-TACCACATTTTGAAATTAATTTCCT-TTTTATTCCATA---GCCTTGATGTTTATACATA--CATGGGACATACAC--CTATCGGCGAAAACAAAAAACAAGGTTGGATGTAA-----------------TTGTTAGCCCAGTCAGTGACACTCACAAAAACAGGCCAGA------ACGCCGGGGGGGAGGAAGGGG--CGTAAAGTTAGTTAAAAAGTAGACACTTCGTAAATTCTTTTATGTCCCCAAAACTCCACGCCGTTAAGTACATATTCC----TAAAAAATAATAAGAAAACACAACAAAGTGAAGAGAGTGAATAATACTAATAATGAAAAGAA-TATTGAATGAACTGGTAGAAAATAAAC-TTGTTTGATCTTACGTGCATTCTATTATATGGTAACGA--TGATCCACATATTTCAACATGTCCCAAAATTCATGCTACAAT-AATATGGCCTCAGCACAAGTCA--AGATGGAGTGCCTTACCATTG-AAA-TTA-TAG-CTAATTAAAGAGG----------GTAT-TTC-AAGCATAGTTAGGTTTATTTAAAAAAAATGTCGTAAGGAATCAATATGTAGT-AAA-ATAAAATGTTCGTACGCAATGTAAAGACTAATT--ATG--AGACCCGACAAGTATCGAGACGCTTTTTTGTCAAATGATGAGAGCCTGCT-ATTCAAATGGCTGAACATAGGT--GATAGAATGCATAA----CAAGATCACCAAGACGAATTCTAGGTCCAGCGA--G-AAGATT-TAGCAGTT-G-TGTT-CACAAAACGAGAA-TAGTCTCGTACCCGCACAGATTAGCATCGTTCTTTTATAGTAGC--G-TCGA-TC--------TTTCGCTTTAC-AAAA--AACTA------GATTT----GTGTA---AT-ATTCC---ACCATTTGCCGATGCCA---AAT---T-----ACAA-----A-AGTCAAC---T-GC-GA-AT-AAATAG-AAGATTACTTT--A-TAGTGCTTGCACATTGCT----AT--AA-AATGTTATACTTT--TATTATTAGAAAA-AGAATCGGTTAAGAAA-GA--TTAGGTTAGGACAA-TCCCTGTTCAAGCAG
gi|4 : TCCATAATTGGCT-GATGTTTAT-C-TATGCATGGTAGATAAACGA-TATCACC-----------------TT----------------------------------CAGTCAGTGAC-------------GG-TCAAATTAGCACG--GGGGAGGGGGGGGGGGGCCGT-AAGTTAGT---AAAAT-GG-ACTTCGT--GTTGTTTTAT------AACA-T-CACG-CGTTA--TAC--ATTTC----T---------TAG----A--CAAC-AAATTAGAA---------ATATT-----TTAAAA--ATTAT---AT--ACTGG-AG-TAATAA-C-TTGTTTGATCTTACGTG-A-AATAGTA-GTCGTG-CGACATGATCCACGTATTTC-ACATGTC----AATTCATGCTACA-TAAA-ATGGATTGAGCA-AAGTCAGTAGATAGA-TG-CATACCATTG-AAA-ATA-TAA-TTAATT--AGAGG---CGGTAAAG-ATATTTAAGGTCTGGTTAGG-TTATTTAAAAAAA-TGTC-TG-GGAATTGATAT--GTT-AAA-GTTCAACA-T-GTA-GCTTTA------TTAATTAAATATTTGA-TCGA--AAT-TCG-AAC---TTTTTGTCAAAT-ATGAGGA--TAATAATTC--------------------GATC--AT-CATAA-----AG---CACCAAAA-AA--TCTACTTCCA-CTA--GCAATATTCTA-C-GTT-GTT-TT-CACA---CG-GAA-T-GTC----A---GCAAAGATT--CATCATTATTTTATC-TA-T--GATCGA-TC--------TT--G-T------AAA--AACTGTGGGGCGGTTG----GTGCA---ATAATTTC---A--A-GTG-CGATGCTC---AA----G-----AC-A-----AGAGTC--C---G-GCGGACATAAAATAGAAA-ATTAC--CGTAGCGGCGCTTCCA-A-TGCT----AT---G-AATT-TAGACTTTTATATTATTAT-CAAC-AAATCG--TATAAAATGGGTTTA--TT-TGAC-A-T-TTTG-TC-AGCAGATTTACTACGTATAG--TATGCCG--TGTAAAA--ACTTGACAACGGTA
gi|5 : A-TGTCATACCATTG-AAATATA--AA-GTAATTA----GGTTTATCTAAAAAAAATT-----CTTTGTT---TTTTTTTA-------TGTA-TA-GGAAT----AT--AGT-AAAAGTTCTACAT--GTA-GCTTTG------CTAAAT--ATA--TGACCCGA--AATATCG-GAC---TTTTTGTCAAA--ATGAGGA--TGCT-ATTCATATG--CAAACA-ATG----ATC-AAT-CATAA----CAG---CACCAAAATAAATTCTACTTCCA-CTA--GCAAGATT-TA-C-GTT-G-T-TTTCACA---CG-GAA-T-GTC----A---GCAAAGATT--CATCATTCTTTTATC--A-C--G-TCGA-TCT-------TT--G-TTTAC-AAAA--AACTG------ATTTT----GTGTA---AT-ATTCCAGAA--A-TTACCGGAGCGC-----T---T-----GC-A-----------------C-AT-GCTATAAAA-AA-AA-AT---------GTAG-ACTTTTAT--TATT----ATAAAACAA-----------------ATCGTAAA---------------AAATGA--TTA--TT-TGACAA-T-TTTG-TCAAGCAGATTTAC-AC--ATA---TATGCTGC-TGT-AAA--ACTTAACAACGGTAGTAAagttagtaagcctaaaatattagcaagtacatgaattcttcatttgacattgtggtgggagagcatctacgtagtcgtgagcactttttcattgtgacgtcatatgtgggtgagcacttttgtcattgtgacgtcataagtgggaaatgtcggaagtactcagaggttatctccctgtttgtttgaacgctgacctt
gi|6 : AAAA--A-AAAT-TG-TCCGT-GT-GGTTTTTTGACCAGACGGG--TTTAA-TTTTGTGA-TGTTA------TGC-ATT---TTCTGGA---A---T--TTT-GTAA---AAA----GAA-AACACTTG--CTATATTCATGTATA---TAAAAA-CTACACA----CGGCAAACTTAC------TGGGTGA-A--------------AAGGTGATAT-AGTTTTA-AA------AAGAGTTATATA----TATTA-AGT---TCTGCCATTTG-GTAGA------TGAAATTTGAG-TTAAA--AACAC-AAAAAT---AACATTTTT-TATACATTTGAT-----CAAAGTGAAAGTGGTTGTCATGACAACAAAAAAG-GCATGTTGAACAGCTTTG--TAAGACCTACGT-----AAAAAAA---CATTTTTAAC-ATGA-AATTGAGA-TGATAAAGATTCATAAAAGCA--A-CTAA-AAGGAC-TA-CCAACCCGGCT---------TGTT-TCGATA-GTAACC--AATACAAAATAGTTTATG-------TCTCTTCGTTTTATCAgcctaaataacaacttcatttgtgtattcagaaagacctgtgatgcagagctctacgtagtcgtgacacactttttctatgtgacgtataatgtgggaatgtacggaggtacatccagagttatctccctgttgttgcaaacctcac
gi|7 : TT-TA-C-GTTTG-G-TT-CACA---CG-GAAAT-GTC----A---GCAAAGAT-----------------C-TA-C--G-CTGA-TC--------TTT-G-TTTCA-AAAA--AACTG------ATCTT----GTGTA---AT-ATTCC---A--A-GTGCCGATGCCC---AATATTT-----AC-A-----A-AGTC-ACTAGC-GA-GACATAAA-TAG-AA-ATTAC--C---GTAGCGCTTGCACA-TGCA----ATAAAA-AATG-TAGACCTT--TATTATTATAAAAACTAATCG---AATAAATGA--TCAG-TT-TGACAA---TTTG-TCAAGCAGATTTAC-CA-TATATACTATACCGC-TGT--AA--ACTTAACAACGTTAGTAAt
gi|8 : ATATGAATTTTT-CATATCATAAGAG---TATAACATTAGTACAGTACATATGTGAATTCTGTTGAAAGGAATCAATTTTGAACTTCAATAAACACAAAAAATTAGAGCACTCTTATCCATCTTTGATTCCATATAATTCAA-GTGGTTGCAATAACA----------GT---TT------CTTTAGATAAGACCTACGTCATACAAAAAAATTCCACTTTTAACAATAATAATTTCAATTCACTAAGATTGCT-AAAGCATTATCTAACAAATATCTGTCCAACGTTGCTTTTTTGTTGTGTCATCCCTG-GTAACCAAATT---ACACCATTtcctaaataacagaagtacatgacattctttcattgtgtgttattcagaaggacattgatgcagagctctacgtagtcgtgacgcactttctcatctgtgt
gi|9 : TTAC--C---GTAGCGCTTGCACA-TGCT----A-AATA-AATG-TAGACTTT--TACAATTATAAAACAAAATCG--TATTGAATGA--TTA--TT-TGAC-A-T-TTTG-TCAAGCAGGTTTAC-AC----A---TATACCGCTTTT-AAAATACTTGACAACAGTAGTAAcacttt
blockSeqs : AATATG G G TACAT CA ATCAT C CATTGTA TTC T G T TAAT GTC C T A GT C A TAGATA T ATA TTTACACT A TC TTAC C G C GC ATATTCATG GTC A TTTG TATACA C ACTTTAACTGCCGC G G TATCAT TTA ACA T C ACA G T AAGGAA C CA TA A A TAG A C TCCAT A A . A G GA CAT ATTC A T T AG A TTATC C C TC TTTTTGT A A AA ACA G AGTTAGA CAT T AC AG N N TTA . C . T . ATTT C T T T T C . G G T TCTT G AT AT G TG A A AA AT AATG T A TA AAGT AA A A AG GT C C TCATTGGCTCAAACGTCTTTAAA T T C ATT T A A TG G C GAAAACAAAAAACAAGGTTGGATGTAATTG ACTCACAAAAACA C ATTAGCACG GGGGCC A TAA A A C AA T G C C C C AG A TAAAAAATAATAAGAAAACA A GAGTGAATA AATAA GAA TGA GA T A A T C TC T A C A CCA AT TA C G T G C A T TT . AAAGA TTTA C TA C A AA AA G A TC GT A A T TTC C TAAAGA AA TT CA A GCT TG CC A GC T GTG G G TTAG GAT G . C C G A T T G T AAA A A A TCGT CCC TTAG CTTC GT G AA A G TTTGACAA TC C CA TC TGGGGC CTCC CTG A AGA CC T TTTAATTTAGGGGCAGTTTCAAGTCACC C A A G CTTTA T T AGAG CA C T TA ACT GTTAAG GT GG A A TC T T TATATAC T AA AT
blockSeqs : TT G . TA CA T . . . . . A A TGG . C G T . . . . . ATAC . . . . A T . GG . . . . . . . . . . AG T . . C . . . AA . A A . . A . A A . A G . C GT . . . CA A AA . . C T . . . A T . CGT . . . A G . . G G A TCT . . . T A T . . T GA . . . . . T . . . . . . T . . . . . . G C ATCGCAAACAAAACAATGTTGCATTT . C ACGCC GGGC A . G . C AA T G A . C C . A TAAATTAGAC A . . AT . . . A . . . TT . . C A A TA A C G T . C . . T . AAA A T T A A AA A . . TT . . . A T . . . . . . . T . . . . G . . . . . . C . . . . . . . . . . . . . AT GTTC T . . . . T C . C . . . . . . . . AATATTTACAAAGTCACTAGCGA C A . . CCGTA C . . TA . . . CAA TATA . G . A T . . GTATAG . A .
blockSeqs : . . . T G . . . . . T G TG . T . . . . . . . AC . . . . A A . . . . . . . . . . . . . G . . G . . . CA . . . . . C . . . . . . . . A . . . GC . AC . . C . . . . . A . . . . . G . . . . . . . . TT . . AG . . . A . . . T . C . . . . . TTAGA . . . A . . . . . . . A . . . . . T A . . . . T . . T . AGA C A C C G C A . . T . . . A T . . . . . . . T . . . . G . . . . . . C . . . . . . . . . . . . . TT ATTA A . . . . . T . C . . . . . . . . AATTACAAAAGTCAACTGC T A . . CA C . . TA . . . AG TATT . . . A T . . ATA . A .
blockSeqs : . . . . . . T A TG . T . . . . . . . AT . . . . . T . . . . . . . . . . C . . . . . . A . . . T T A . . . . . . . T T . . . . . . . . . . . . G . . . . . . . . . . . . . . . . . . . . TT ATTC T . . . . . . . C . . . . . . . . AAGACAAGAGTCCGGCG C A . . CC C . . T . . . CA AAT . . . . T . . A . . .
blockSeqs : A G . . . . . . . . . AT . . . . . . . G . . . . . . . . . . . . . . . . . . . . T ATC T . . . . . . . A . . . . . . . . TTGCACAT . . . . CC . . . T . . . . . . . . . . .
blockSeqs : . . G . . . . . . . . . . . . . . . . . . . T . T . . . . . . . . . . . . . . . . . . . . A . .
blockSeqs : . . . . . . . . . . . . . . . . . . . . .
blockSeqCons : TG** AGA** C* A* T** G**** ** ATTC AATTGCAAAAGTCACGCG*********************** CCTA*** T** GTAC****
originalCons : NNNAAGGTAAGATTTGCGCCATTTCAATATGTAGCGAACAAGTCATGTTACATAGCAATATGTTCAG----TAGG-AATTTG-------TCTTTTAA---AAAT-GG-ACTTTTAAAA--A-AAAT-TG-TCCGT-GTTGGTTTTTTGACCACATGGG--CTTAA-TTTTGTGA-TGTTT------TGC-GTT---TTCTGGA---A---T--TTT-GCAA--TAAA----GAG-AATACTNG--CT--------GTATA---TAAAAA-CTACACA----AAGCAAACTCAC------CGGTTGG-A--------------AAGGAGATAT-AATTTTT-AA------AAGAG---TATAAC-TTANCA-AGT---TATGTNAATTG-GTTGA------TGAAATTTGAA-TTCGA--AACACAAAAAAT---AGCACTTTT-TGTATNTTTGAT-----AAAATTCAAAGTGGTTGCCATGACAACAAAAAAG-GTATATTGAACAGCTTTG--TAAGACCTACGTC--ACAAAAAAAT--CACTTTTAAC-ATAA-AATTTCAA-TCATAAAGATTAGTAAAAGCA--A-NTAA-AAATAT-TA-CCAACCCGGCT------TTGTGTT-TCCATG-GTAACC--ATT--AACATNATTTTTG-------TTGGTGCGTTTTGTCACTAGGTTTTATCATTG--TACGA--CTTTTAATGGGTGTATCG---AATATTTTCAATAACAAAATATGACTCCAACCCCGAAATGAAAAACTAGTTATATCTATTTGTCAAATATTGTNAAGTATTGCACTATCCCTCATCACCCACCCCCTCCCCNATTTATTTAAACAATTTTACTATCGAAATATATAGATCATTTAAGCTGACGGTNGATGAAGGTAAAATTATTGANTTTTTTNAAAATGATATTAAANTAGTNCGACTTTAGCCACAAAAATATAAGA-ATGAATACCTTTGG-TGTCT-ACCATAGAAATGTAATATT-TAAA--TAAATCAAGA--TTNT--CTTATNGATAGTTCATATAAGCGGGTAAGTATTATCAGTATATATATCGT--CAA----TTTCCCGGCACGT--TTTNCAC-GCTCCC--GTTTCG--TCGT-AAATTC-TGTGTTCCATTGGCTCGATTGGCTCAAACGTCTTTAACTGTCTTTAGA-TACCACATTTTGAAATAAATTTCCTCTTTTATTCCATA---GCCT-GATGTTTAT-C-TA--CATGGTAGATAAACGACTATCACC-----------------TT---CGTAA-----------------TT-TTAGCCCAGTCAGTGAC-------------GGCTCGA------ACG--GGGGGGGGGGGGGGGG--CGTAAAGTTAGT---AAAAT-GACACTTCGTAAATTGTTTTATGTCCCCAANA-TCCACGCCGTTA--TACATATTCC----T---------TAG----AC-CAACAAAATTAAGA---------ATATT-----TTAAAA--A-TAT---AT--ACTGG-AGAAAATAA-C-TTGTTTGATCTTACGTG-ATCATATTA-GTCGTG-CGACATGATCCACGTATTTCAACATGTC--AAAATTCATGCTACA-T-AA-ATGGCTTCAGCACAAGTCAGTAGATAGA-TGCCATACCATTG-AAA-ATA-TAA-GTAATTAAAGAGG---AGGTAAAGCATATTT-AGGCCTGGTTAGGTTTATTTAAAAAAA-TGTC-TA-GGAATTAATAT--AGT-AAA-GTTCAACATT-GTA-GCTTTG------CTAATT--ATA--TGACCCGA--AATATCG-GAC---TTTTTGTCAAAT-ATGAGGA--TGCT-ATTCAAATG--CAAACA-ATG---GATC-AAT-CATAA----CAG---CACCAAAATAAATTCTACTTCCA-CTA--GCAAGATT-TA-C-GTT-G-T-TT-CACA---CG-GAA-T-GTC----A---GCAAAGATT--CATCATTCTTTTATC-TA-C--G-TCGA-TC--------TT--G-TTTAC-AAAA--AACTG------ATTTT----GTGTA---AT-ATTCC---A--A-GTGCCGATGCCC---AAT---T-----AC-A-----A-AGTC-AC---C-GC-GACATAAAATAG-AA-ATTAC--C--AGTAGCGCTTGCACA-TGCT----ATAAAA-AATG-TAGACTTT--TATTATTATAAAACAAAATCG--TAATAAATGA--TTA--TT-TGACAA-T-TTTG-TCAAGCAGATTTAC-AC-TATA---TATGCCGC-TGT-AAA--ACTTGACAACGGTAGTAA
finalCons : NNNAAGGTAAGATTTGCGCCATTTCAATATGTAGCGAACAAGTCATGTTACATAGCAATATGTTCAG----TAGG-AATTTG-------TCTTTTAA---AAAT-GG-ACTTTTAAAA--A-AAATTG--TCCGT-GTTGGTTTTTTGACCACATGGG--CTTAA-TTTTGTGA-TGTTT------TGC-GTT---TTCTGGA---A---T--TTT-GCAA--TAAA----GAG-AATACTNG--CT--------GTATA---TAAAAA-CTACACA----AAGCAAACTCAC------CGGTTGG-A--------------AAGGAGATAT-AATTTTT-AA------AAGAG---TATAAC-TTANCA-AGT---TATGTNAATTG-GTTGA------TGAAATTTGAA-TTCGA--AACACAAAAAAT---AGCACTTTT-TGTATNTTTGAT-----AAAATTCAAAGTGGTTGCCATGACAACAAAAAAG-GTATATTGAACAGCTTTG--TAAGACCTACGTC--ACAAAAAAAT--CACTTTTAAC-ATAA-AATTTCAA-TCATAAAGATTAGTAAAAGCA--A-NTAA-AAATAT-TA-CCAACCCGGCT------TTGTGTT-TCCATG-GTAACC--ATT--AACATNATTTTTG-------TTGGTGCGTTTTGTCACTAGGTTTTATCATTG--TACGA--CTTTTAATGGGTGTATCG---AATATTTTCAATAACAAAATATGACTCCAACCCCGAAATGAAAAACTAGTTATATCTATTTGTCAAATATTGTNAAGTATTGCACTATCCCTCATCACCCACCCCCTCCCCNATTTATTTAAACAATTTTACTATCGAAATATATAGATCATTTAAGCTGACGGTNGATGAAGGTAAAATTATTGANTTTTTTNAAAATGATATTAAANTAGTNCGACTTTAGCCACAAAAATATAAGA-ATGAATACCTTTGG-TGTCT-ACCATAGAAATGTAATATT-TAAA--TAAATCAAGA--TTNT--CTTATNGATAGTTCATATAAGCGGGTAAGTATTATCAGTATATATATCGT--CAA----TTTCCCGGCACGT--TTTNCAC-GCTCCC--GTTTCG--TCGT-AAATTC-TGTGTTCCATTGGCTCGATTGGCTCAAACGTCTTTAACTGTCTTTAGA-TACCACATTTTGAAATAAATTTCCTCTTTTATTCCATA---GCCT-GATGTTTAT-C-TA--CATGGTAGATAAACGACTATCACC-----------------TT---CGTAA-----------------TT-TTAGCCCAGTCAGTGAC-------------GGCTCGA------ACG--GGGGGGGGGGGGGGGG--CGTAAAGTTAGT---AAAAT-GACACTTCGTAAATTGTTTTATGTCCCCAANA-TCCACGCCGTTA--TACATATTCC----T---------TAG----AC-CAACAAAATTAAGA---------ATATT-----TTAAAA--A-TAT---AT--ACTGG-AGAAAATAA-C-TTGTTTGATCTTACGTG-ATCATATTA-GTCGTG-CGACATGATCCACGTATTTCAACATGTC--AAAATTCATGCTACA-T-AA-ATGGCTTCAGCACAAGTCAGTAGATAGA-TGCCATACCATTG-AAA-ATA-TAA-GTAATTAGA--GG---AGGTAAAGCATATTC-AGGCCTGGTTAGGTTTATTTAAAAAAA-TGTC-TA-GGAATTAATAT--AGT-AAA-GTTCAACAT--GTA-GCTTTG------CTAATT--ATA--TGACCCGA--AATATCG-GAC---TTTTTGTCAAAT-ATGAGGA--TGCT-ATTCAAATG--CAAACA-ATG----ATC-AAT-CATAA----CAG---CACCAAAATAAATTCTACTTCCA-CTA--GCAAGATT-TA-C-GTT-G-T-TT-CACA---CG-GAA-T-GTC----A---GCAAAGATT--CATCATTCTTTTATC-TA-C--G-TCGA-TC--------TT--G-TTTAC-AAAA--AACTG------ATTTT----GTGTA---AT-ATTCC---A--A-GTGCCGATGCCCAATTGCAAAAGTCACGCG-----------------------GACATAAAATAG-AA-ATTACCTA---GTAGCGCTTGCACA-TGCT----ATAAAA-AATG-TAGACTTT--TATTATTATAAAACAAAATCG--TAATAAATGA--TTA--TT-TGACAAT--TTTG-TCAAGCAGATTTAC-ACGTAC----TATGCCGC-TGT-AAA--ACTTGACAACGGTAGTAA
4 sequences could not be aligned to this reference sequence:
Unaligned ( gi|13 ): ATTTGTGTATTCAGAAGGACCTGTGATGCAAAGCTCTACGTAGTCGTGACTCACTTTTTCATTGTGACGTCATAATGTGGGTGACGCATTTTTCATTGTGACGTCATAAAGCGGGAAATATACGGAGGTCATCCAGAGTTATCCCCCTGTTGTTGCTGACCTGATTAAATTA
Unaligned ( gi|15 ): AGAGCTTCTACGTAGTCGTGACGCAACTTTTTCATTGTGACGTCCATAATGTGAGTGACACACCTTTTCAATTGTGAACGCCAATAAAGTGGGAAATGTACGGAGGTACATCAGAGGTATCTCCCTGT
Unaligned ( gi|21 ): ACGAGTTATCTCCCTGTTGTCGCAAACCTGACCTTAAACAAATTTTGTAGTTTATGAAATA
Unaligned ( gi|22 ): GATACATCAAGAGTTATCTCCTTGTTGTTGCAAA
Alignments
lowQualScore : 11111111111111111111111111111111111111111111111
lowQualScore : 1 11111 22222 2222222 111 1111 1 11 111111 111 1111111111 1111 11 555555555 111 1111 222222 44444444444444 222222 111 111 1 111 1 222222 1 11 111 1 22222 1 11 111 1111 1 1 1 11111 1 1 11 3333333 1 1 11 111 3333333 11 11 111 1 2222 1 2222 1 1 2 1111 1 11 11 33 11 11 222222 11 2222 11 1 11 11 1 1 777777777777777777777777777777777777777777 111 1 1 1 11 55555555555555555555555555555555555555555555555 5555555555555 33333333333 333333 111 1 1 11 555555555555555555555555 444444444 22222 2222 111 11 1 1 1 1 1 1 111 111111 1 111 11 111 11111 22 11 3333333 11 111 11 11 11 11 111 11 111 2222 1111 111 1 1111 1111 22222222 11 111111 1111 111 111 44444444444444444444444444444444444444444 1 3333 1111 11 11 111 33333333333 11
lowQualScore : 0 777777 2 2 55555 33 22222 8 6666666 444 0 8 8 1 1111 6666 6 1 7 55 6 6 999999 6 111 7777777777 6 99 4444 6 3 1 11 777777777 0 444 8 7777 333333 0 8 77777777777777 8 8 888888 777 555 1 0 777 1 0 888888 0 22 33 3 3 777 0 0 1 55555 3 3 0 3 0 2 33 666 8888 0 0 0 11 3 55555 0 0 22 0 2222222 0 0 33 777 1 2222222 0 333 7 33 33 5 5 0 777 5 1 3333 1 5 4444 1 5 1 1 1 1 3 6 6 6 8888 3 88 88 1 11 1 7 11 44 333333 7 7 88 8888 88 1 3 88 88 3 3 999999999999999999999999999999999999999999 7 7 6 777 0 0 0 33 0 2 2 99999999999999999999999999999999999999999999999 5555555555555 2 66666666666 666666 3 777 7 0 2 44 3 6 0 1 0 2 2 33 3 333333333333333333333333 3 000000000 55555 7777 777 33 0 9 0 0 0 33 0 0 2 3 777 555555 2 2 5 8 3 8 8 666 0 11 0 444 0 00000 88 1 1 0 0 11 8 8 8 0 99 11 8 4444444 22 444 8 11 11 11 11 0 8 444 88 11 3 77 000 0000 5 5 2222 000 0 3 5 77 2 5 5 5 5 0 5 888 5 5 5 0000 888 0000 7777 55 5 66 5 5 33333333 66 5 77 66 666666 0 2222 000 5 000 77 5 0 44444444444444444444444444444444444444444 1 6 6 2222 6 4 0 77 2222 55 1 1 5 99 33 99 3 99 55 6 7 222 6 44444444444 8 88 11
lowQualScore : . ...... . . ..... .. ..... . ....... ... . . . . .... .... . . . .. . . ...... . ... .......... . .. .... . . . .. ......... . ... . .... ...... . . .............. . . ...... ... ... . . ... . . ...... . .. .. . . ... . . . ..... . . . . . . .. ... .... . . . .. . ..... . . .. . ....... . . .. ... . ....... . ... . .. .. . . . ... . . .... . . .... . . . . . . . . . . .... . .. .. . .. . . .. .. ...... . . .. .... .. . . .. .. . . .......................................... . . . ... . . . .. . . . ............................................... ............. . ........... ...... . ... . . . .. . . . . . . . .. . ........................ . ......... ..... .... ... .. . . . . . .. . . . . ... ...... . . . . . . . ... . .. . ... . ..... .. . . . . .. . . . . .. .. . ....... .. ... . .. .. .. .. . . ... .. .. . .. ... .... . . .... ... . . . .. . . . . . . . ... . . . .... ... .... .... .. . .. . . ........ .. . .. .. ...... . .... ... . ... .. . . ......................................... . . . .... . . . .. .... .. . . . .. .. .. . .. .. . . ... . ........... . .. ..
lowQualScore : 7 888888 5 8 00000 55 66666 0 0000000 000 8 0 0 4 8888 7777 7 7 7 88 7 7 222222 7 777 0000000000 7 22 2222 7 8 0 00 000000000 8 000 0 0000 000000 6 0 00000000000000 0 0 888888 555 888 0 0 555 0 0 888888 0 22 88 2 2 555 0 2 0 00000 2 2 0 2 8 5 88 222 2222 0 0 0 00 2 88888 0 0 55 2 0000000 0 0 88 000 0 5555555 2 555 3 88 88 8 2 8 555 5 0 0000 0 5 5555 0 5 0 0 0 0 3 7 7 7 0000 3 33 33 0 77 0 3 00 77 333333 3 3 33 3333 33 0 3 33 33 3 3 555555555555555555555555555555555555555555 3 3 7 555 0 0 0 88 8 5 5 88888888888888888888888888888888888888888888888 0000000000000 5 22222222222 222222 2 555 0 0 5 00 2 5 2 0 0 5 5 88 2 000000000000000000000000 2 000000000 00000 0000 555 88 0 8 0 0 0 55 0 0 5 2 000 222222 5 5 5 0 2 0 0 888 8 00 8 000 8 88888 88 4 4 8 8 00 0 0 0 8 22 00 0 0000000 44 000 0 00 00 00 00 8 0 000 88 00 2 99 000 0000 7 7 1111 000 1 6 7 99 5 7 7 7 7 0 0 888 0 0 0 6666 888 4444 6666 44 0 99 0 0 11111111 99 0 55 99 444444 3 1111 000 7 000 99 7 7 66666666666666666666666666666666666666666 3 7 7 6666 6 3 7 11 1111 11 6 4 7 22 88 22 7 22 88 7 3 555 7 88888888888 0 88 00
consensus : NNNAAGGTAAGATTTGCGCCATTTCAATATGTAGCGAACAAGTCATGTTACATAGCAATATGTTCAG----TAGG-AATTTG-------TCTTTTAA---AAAT-GG-ACTTTTAAAA--A-AAAT-TG-TCCGT-GTTGGTTTTTTGACCACATGGG--CTTAA-TTTTGTGA-TGTTT------TGC-GTT---TTCTGGA---A---T--TTT-GCAA--TAAA----GAG-AATACTNG--CT--------GTATA---TAAAAA-CTACACA----AAGCAAACTCAC------CGGTTGG-A--------------AAGGAGATAT-AATTTTT-AA------AAGAG---TATAAC-TTANCA-AGT---TATGTNAATTG-GTTGA------TGAAATTTGAA-TTCGA--AACACAAAAAAT---AGCACTTTT-TGTATNTTTGAT-----AAAATTCAAAGTGGTTGCCATGACAACAAAAAAG-GTATATTGAACAGCTTTG--TAAGACCTACGTC--ACAAAAAAAT--CACTTTTAAC-ATAA-AATTTCAA-TCATAAAGATTAGTAAAAGCA--A-NTAA-AAATAT-TA-CCAACCCGGCT------TTGTGTT-TCCATG-GTAACC--ATT--AACATNATTTTTG-------TTGGTGCGTTTTGTCACTAGGTTTTATCATTG--TACGA--CTTTTAATGGGTGTATCG---AATATTTTCAATAACAAAATATGACTCCAACCCCGAAATGAAAAACTAGTTATATCTATTTGTCAAATATTGTNAAGTATTGCACTATCCCTCATCACCCACCCCCTCCCCNATTTATTTAAACAATTTTACTATCGAAATATATAGATCATTTAAGCTGACGGTNGATGAAGGTAAAATTATTGANTTTTTTNAAAATGATATTAAANTAGTNCGACTTTAGCCACAAAAATATAAGA-ATGAATACCTTTGG-TGTCT-ACCATAGAAATGTAATATT-TAAA--TAAATCAAGA--TTNT--CTTATNGATAGTTCATATAAGCGGGTAAGTATTATCAGTATATATATCGT--CAA----TTTCCCGGCACGT--TTTNCAC-GCTCCC--GTTTCG--TCGT-AAATTC-TGTGTTCCATTGGCTCGATTGGCTCAAACGTCTTTAACTGTCTTTAGA-TACCACATTTTGAAATAAATTTCCTCTTTTATTCCATA---GCCT-GATGTTTAT-C-TA--CATGGTAGATAAACGACTATCACC-----------------TT---CGTAA-----------------TT-TTAGCCCAGTCAGTGAC-------------GGCTCGA------ACG--GGGGGGGGGGGGGGGG--CGTAAAGTTAGT---AAAAT-GACACTTCGTAAATTGTTTTATGTCCCCAANA-TCCACGCCGTTA--TACATATTCC----T---------TAG----AC-CAACAAAATTAAGA---------ATATT-----TTAAAA--A-TAT---AT--ACTGG-AGAAAATAA-C-TTGTTTGATCTTACGTG-ATCATATTA-GTCGTG-CGACATGATCCACGTATTTCAACATGTC--AAAATTCATGCTACA-T-AA-ATGGCTTCAGCACAAGTCAGTAGATAGA-TGCCATACCATTG-AAA-ATA-T-AAGTAATT--AGAGG---AGGTAAAGCATA-TTT-AGGCCTGGTTAGGTTTATTTANAAAAA-TGTC-TA-GGAATTAATAT--AGT-AAAA------GTTCN-AC---A-TGTA--GCTTTGCTAATT--ATA--TGACCCGA--AATATCG-GAC---TTTTTGTCAAAT-ATGAGGA--TGCTATTCAAATG--CAAACA---AT----GATC-AAT-CATAA----CAG---CACCAAAATAAATTCTACTTCCA-C--TAGCAAGATT-TA-C-GTT-G-T-TTCACA---CG-GAA-T-GTC----A---GCAAAGATT--CATCATTCTTTTATC-TA-C--G-TCGA-TC--------TT--G-TTTAC-AAAA--AACTG------ATTTT----GTGTA---AT-ATTCC---A--AGT-GCCGATGCCC---AA---TT-----G-CAA----AAGTCA--C--GCG--GACATAAAATAG-AA-ATTACC--AGTAGCGCTTGCACAT-GCT----ATAAAAAATGT-AGACTTT--TATTATTATAAAACAAAATCG--TAANAAATGA--TTA--TT-TGACAA-T-TTTG-TCAAGCAGATTTAC---ACATA---TATGCCGC-TGT-AAA--ACTTGACAACGGTAGTAA
Reference ( family-39 ) : NNNAAGGTAAGATTTGCGCCATTTCAATATGTAGCGAACAAGTCATGTTACATAGCAATATGTTCAG----TAGG-AATTTG-------TCTTTTAA---AAAT-GG-ACTTTTAAAA--A-AAAT-TG-TCCGT-GTTGGTTTTTTGACCACATGGG--CTTAA-TTTTGTGA-TGTTT------TGC-GTT---TTCTGGA---A---T--TTT-GCAA--TAAA----GAG-AATACTNG--CT--------GTATA---TAAAAA-CTACACA----AAGCAAACTCAC------CGGTTGG-A--------------AAGGAGATAT-AATTTTT-AA------AAGAG---TATAAC-TTANCA-AGT---TATGTNAATTG-GTTGA------TGAAATTTGAA-TTCGA--AACACAAAAAAT---AGCACTTTT-TGTATNTTTGAT-----AAAATTCAAAGTGGTTGCCATGACAACAAAAAAG-GTATATTGAACAGCTTTG--TAAGACCTACGTC--ACAAAAAAAT--CACTTTTAAC-ATAA-AATTTCAA-TCATAAAGATTAGTAAAAGCA--A-NTAA-AAATAT-TA-CCAACCCGGCT------TTGTGTT-TCCATG-GTAACC--ATT--AACATNATTTTTG-------TTGGTGCGTTTTGTCACTAGGTTTTATCATTG--TACGA--CTTTTAATGGGTGTATCG---AATATTTTCAATAACAAAATATGACTCCAACCCCGAAATGAAAAACTAGTTATATCTATTTGTCAAATATTGTNAAGTATTGCACTATCCCTCATCACCCACCCCCTCCCCNATTTATTTAAACAATTTTACTATCGAAATATATAGATCATTTAAGCTGACGGTNGATGAAGGTAAAATTATTGANTTTTTTNAAAATGATATTAAANTAGTNCGACTTTAGCCACAAAAATATAAGA-ATGAATACCTTTGG-TGTCT-ACCATAGAAATGTAATATT-TAAA--TAAATCAAGA--TTNT--CTTATNGATAGTTCATATAAGCGGGTAAGTATTATCAGTATATATATCGT--CAA----TTTCCCGGCACGT--TTTNCAC-GCTCCC--GTTTCG--TCGT-AAATTC-TGTGTTCCATTGGCTCGATTGGCTCAAACGTCTTTAACTGTCTTTAGA-TACCACATTTTGAAATAAATTTCCTCTTTTATTCCATA---GCCT-GATGTTTAT-C-TA--CATGGTAGATAAACGACTATCACC-----------------TT---CGTAA-----------------TT-TTAGCCCAGTCAGTGAC-------------GGCTCGA------ACG--GGGGGGGGGGGGGGGG--CGTAAAGTTAGT---AAAAT-GACACTTCGTAAATTGTTTTATGTCCCCAANA-TCCACGCCGTTA--TACATATTCC----T---------TAG----AC-CAACAAAATTAAGA---------ATATT-----TTAAAA--A-TAT---AT--ACTGG-AGAAAATAA-C-TTGTTTGATCTTACGTG-ATCATATTA-GTCGTG-CGACATGATCCACGTATTTCAACATGTC--AAAATTCATGCTACA-T-AA-ATGGCTTCAGCACAAGTCAGTAGATAGA-TGCCATACCATTG-AAA-ATA-T-AAGTAATT--AGAGG---AGGTAAAGCATA-TTC-AGGCCTGGTTAGGTTTATTTAAAAAAA-TGTC-TA-GGAATTAATAT--AGT-AAA-------GTTCA-AC---A-TGTA--GCTTTGCTAATT--ATA--TGACCCGA--AATATCG-GAC---TTTTTGTCAAAT-ATGAGGA--TGCTATTCAAATG--CAAACA---AT----GATC-AAT-CATAA----CAG---CACCAAAATAAATTCTACTTCCA-C--TAGCAAGATT-TA-C-GTT-G-T-TTCACA---CG-GAA-T-GTC----A---GCAAAGATT--CATCATTCTTTTATC-TA-C--G-TCGA-TC--------TT--G-TTTAC-AAAA--AACTG------ATTTT----GTGTA---AT-ATTCC---A--AGT-GCCGATGCCC---AA---TT-----G-CAA----AAGTCA--C--GCG--GACATAAAATAG-AA-ATTACC-TAGTAGCGCTTGCACAT-GCT----ATAAAAAATGT-AGACTTT--TATTATTATAAAACAAAATCG--TAATAAATGA--TTA--TT-TGACAA-T-TTTG-TCAAGCAGATTTAC---ACGTAC--TATGCCGC-TGT-AAA--ACTTGACAACGGTAGTAA
gi|1 : AAGGTAAGATTTGCACCATTTCAATA-ATAGCAAACAAGTCATGTTACATAGAAATGTGTTCAG----TAGG-AATTTG-------TCTTTTAA---AAAT-CG-ACTTTAAAAA--G-AAAT-TG-CCCGT-ATTGGTTTT--GACCACATGGG--CTTAA-TTT-GTGA-TGTTT------TGC-GTT---TTCTGGA---A---T--TTT-CTAC--TAAA----GAG-AATACTAG--CT---------TATA---TAAAAA-CTACGCA----AAGCAAACTTAC------CGGGTGG-A--------------AAGGAGATAT-AATTTTT-AA------AAGAG---TATAAC-TTAACA-AGT---TATGTTGATTG-GTTGA------TGAAATTTGAA-TTTGA--AACACAAAAAAT---AGCACTTTT-TGTATATATGAT-----AAAATTCAAAGTGGTTGCCATGACAACAAAAAAGTGTATATTGAACAGCTTTG--TAAGACCTACGCC--ACAAAAAATT--CATTTTTAAC-ATAA-AATTTCAA-TCATAGAGATTAGTAAAAGCA--A-ATAA-AAATAT-TA--CAATCGGTCT------TTGTGTT-TCCATG-GTAACC--ATT--AACATTATTTTTA-------TTGGTGCGCTTTGTCACTAAGTTTTATCATTG--TACAA--CTTTTAATGGGT-TATTG---AATATTTTCAGTAACAAAATATGACTCCAACCCCGAAATGAAAAACTAGGTATATCTATTTGTCAAATATTGTGAAGTATTACACTATCCCTCATCACCCACCCCCTCCCCGATTTATTTAAACAATTTTACTATCGAAATATATAGATC----AAGCTGACGGTAGATGAAGGTAAAA-TATTGAATTTTTTAAAAATGATATTAAAATAGTACGACTTTAGCCACAAACATATAAGATAT-AATACCTTT-G-TG--------TAAAAATGTAATATT-TAAA--TAAATCAAGG--TTCT--CTTATCGATAGGGCA-ATAAGCGGGTACGTATTATCAGTATATATATTGT--CAA----TTTCCTAGTACGT--TTTCCAC-GCTACC--GTTTCG--TCGT-AAATTC-TGTGTT
gi|1 : tttTGTTTTTAAAATACCACATTT-GAAATAGATTTCCTCTTTTATTCCATA---GCCT-AATGTTTAT-C-TA--CATGATAGATAAACGACTATCACC-----------------TT---CGTA------------------TT-TTAGCCCAGTCAGTGAC-------------GGCTCGA------AAA--GAGGGGGGGGGGG-------TAAAGTTAGT---AAA-T-GACACTTCGTAGATTGTTT---ATTCCCAAAA-TCCACGCCGTTA--TACATATTCC----T---------TAG----AC-CAATAAAATTAAGA---------ATGTC-----TTAAAA----TAT---AT--ACTGG-AGTAAATAA-C-TTGTTTAATCTTACGTG-ATCATATTA-GTCGTG-CGACATGATCCACGTATTTCAACATGTC--AAAATTCATGCTACA-T--A-ATGGCTTCAGCACAAGTCAGTAGA-AGA-TGCCATACCATTG-AAA-ATA-TAAAGTAATTAAAGAGG---AGGTAAAGCATATTTT-AGGCTTGGTTAGGTTTATTT-CAAAAA-TGTC-TG-GGAAGTAATAT--AGT-AAA-------GTTCA-AC---ATTGTA--GCTTTGATAATT--ATA--TGACTCGA--AATATCG-GAC---TTTTTGTCAAAT-ATGAGGA--TACTATTCAAATG--CAAACA---ATGCCGGATC-AAT-CATAA----CAG---CACCAAAATAAA-TCTACTTCTA-CTATAGCAATATT-TA-C-GTT-G-T-TTCACA---CG-GAA-T-GTC----A---GCAAAGATT--CATCATT-TTTTATC-TA-C--G-TCGA-TC--------TT--G-TTTAC-AAAA--AACTG------ATTTG----GTGCA---AT-ATTTC---A--AGT-GCCGATGCCC---AA---TT-----A-C-A----AAGTCA--C---CGGCGACAT-AAATAG-AA-ATTACC--AGTAACGCTTCCACAT-GCT----ATAAAAAATGT-AGACTTT--TATTATTATAAAACAAAATCG--TAATAAATGA--TTA--TT-TGACAATT-TTTG-TCAAGCAGATTTAC---ACATA---TATGCCGC-TGT-AAA--ACTTGACAACGGTAGTAAtttaaaataccacatttgaaatagatttcctcttttattccatagcctaatgtttatctacatgatagataaacgactatcaccttcgtattttagcccagtcagtgacggctcgaaaagagggggggggggtaaagttagtaaatgacacttcgtagattgtttattcccaaaatccacgccgttatacatattccttagaccaataaaattaagaatgtcttaaaatatatactggagtaaataacttgtttaatcttacgtgatcatattagtcgtgcgacatgatccacgtatttcaacatgtcaaaattcatgctacataatggcttcagcacaagtcagtagaagatgccataccattgaaaatataaagtaattaaagaggaggtaaagcatattttaggcttggttaggtttatttcaaaaatgtctgggaagtaatatagtaaagttcaacattgtagctttgataattatatgactcgaaatatcggactttttgtcaaatatgaggatactattcaaatgcaaacaatgccggatcaatcataacagcaccaaaataaatctacttctactatagcaatatttacgttgtttcacacggaatgtcagcaaagattcatcattttttatctacgtcgatcttgtttacaaaaaactgatttggtgcaatatttcaagtgccgatgcccaattacaaagtcaccggcgacataaatagaaattaccagtaacgcttccacatgctataaaaaatgtagacttttattattataaaacaaaatcgtaataaatgattatttgacaatttttgtcaagcagatttacacatatatgccgctgtaaaacttgacaacggtagtaa
gi|10 : tttaaggtaagatttgcaccatttcaataatagcaaacaagtcatgttacatagaaatgtgttcagtaggaatttgtcttttaaaaatcgactttaaaaagaaattgcccgtattggttttgaccacatgggcttaatttgtgatgttttgcgttttctggaattttctactaaagagaatactagcttatataaaaactacgcaaagcaaacttaccgggtggaaaggagatataatttttaaaagagtataacttaacaagttatgttgattggttgatgaaatttgaatttgaaacacaaaaaatagcactttttgtatatatgataaaattcaaagtggttgccatgacaacaaaaaagtgtatattgaacagctttgtaagacctacgccacaaaaaattcatttttaacataaaatttcaatcatagagattagtaaaagcaaataaaaatattacaatcggtctttgtgtttccatggtaaccattaacattatttttattggtgcgctttgtcactaagttttatcattgtacaacttttaatgggttattgaatattttcagtaacaaaatatgactccaaccccgaaatgaaaaactaggtatatctatttgtcaaatattgtgaagtattacactatccctcatcacccaccccctccccgatttatttaaacaattttactatcgaaatatatagatcaagctgacggtagatgaaggtaaaatattgaattttttaaaaatgatattaaaatagtacgactttagccacaaacatataagatataatacctttgtgtaaaaatgtaatatttaaataaatcaaggttctcttatcgatagggcaataagcgggtacgtattatcagtatatatattgtcaatttcctagtacgttttccacgctaccgtttcgtcgtaaattctgATGTTCAGATCATAGACAATTTG-------TCCTTTACTTCAAAT-GGGACTTTTGAAATAATAAATGTC-TCCATCGTTGATTTTTTGACCACATAGGGTTTTAACTTTTATGAATGTTT------TGCTGTCATATTCTGGA---A---TACTTT-GTAA--TAAATTACGAGCAATGCTCGGCCT---------TATAGTCTAAAAAACTACCCATTTGACACAAG-TCATTATACACGGTTGG-A--------------AA-GAGATA
gi|11 : taaccaAGGTAAGATTTGCAACATTTT----TTTA---------TCATGT-----AGT------TTCAA----TAGG-AATTTACATTGTATCTTTAAA---AAATTAG-ACTTTAAATA--A-AAAT--G-CCCGT-GTCG-TTTTTTGATCAGATGGGT-CTT---TTTTGT-C-TGTTCTAGATATGC-AAC---TTTTAGATTTACACT--TTT-CCAATCTATA----CAG-AATA-TTA--CTG-------GTA-A---TAAA
gi|12 : cgttgg-T-TTCACA---CT-AAA-T-ATC----A---GCAAACAAT--CAGCA-TCTTTTACC-TG-CAAG-CCA------------TT--G-TTTA--AAAATCAATTT------ACTTTCTCCATATACTGGT-ATTCC---A--AAT-GACAGTGCTCTTTAA---TTTAGGGG-CAGTTTCAAGTCA--C---C----ACATAAAATCA-AA-ATTAC---AGTAG----TGCACA---CTAGAGACAAAAAGTGT-AGA
gi|14 : TGTAGC-AACAAGTCATGTTA----GCAATATGTTCAG-----GGG-AATTTG-------T-TTTTAA---AA---GG-ACTTTTAAAA--G-AAAT-TGGTCCAT-GTTA----TTTGACCACATAGG--CTTAA-TTTTGTGA-TGTTT------TGC-GTT---TTCTGGA---A---C--TTCAGCAA--TAAA----AAG-A
gi|16 : ATGATTTTTGAGTTAGATTGATG----TTGTCAC--GTTTTTGTCATTAACTGTGAAGCTGTCNNNNNNNNNNNNN---NNNNNNNNNNNNTACAAAATATGACCCCAACCACGAAATGAAAAACTAGTTATATC
gi|17 : --CATACA---AT----GATC-AAT-TATAA----CAA---CACCAAAATAAACTCT-----------------GATT-TC-C-GTT-G-T-TTCACA---TG-GAA-C--TC----A-----------T--CATCCTTCTTTTATC-AA-C--G-TCGAGTC--------TTC-A-TTTAC-AAAA--AA
gi|18 : AAAAA-CTACACA----AAACAAACTCAC------CGGTTGGCAACTTTAACTGCCGCAAGGAGATAT-AATTTTT-
gi|19 : TTTATCATTG--TACGA--CTTTTAATGGGTGTATCGTTAAATATTTTCAATAACAAAATATGACTCg
gi|2 : AAGGTAAGGTTTGCGCCATTTCAATATGTAGCGAACAAGTCATGTTACATAGCAATATGTTCAG----GAGG-GATTTG-------TCTTTTAA---ATAT-GG-ACTTTTAAAA--A-AAAC-TG-TCCAT-GTTG-TTTTTTGACCACATGGA--CTTAA-TTTTGTGA-TGTTT------TCC-GTT---TTCTGGA---A---T--TTA-GCAA--TAAA----GAG-AAT-CCAG--CT----------ATA---TAAAAA-CTACACA----AAGCAAACTCAC------CGGTTGG-A--------------AAGGAGATAT-ATTTTTTGAA------AAGAG---TATTAG-TTATCA-AGT---TATGTGAATTG-GTTGA------TGAAATTTGAA-TTCAA--AGCACAAAA-AT---AGCACTTTC-TGTATCTTTGAT-----AAAATTCAAAGTGGTTGCCATGACAACAAAAAAG-GTATATTGAACAGCTTTG--TAAGACCTACGTC--ACAAAAAAGT--CACTTTTAAC-ATAA-AATTTCAA-TCATAAGGATTAGTAATAGCA--A-ATAA-AAATAT-TA-CCAACCCGGCT------TTGTGTT-TCCATGAATAACC--ATT--AACATTATTTTTG-------TTGGTGCATTTTGTCACTAGGTTTTATCATTG--TACAA--CTTTT-ATGGGTGTATTG---AATATTTTCAATAACAAAATATGACTCCAACCCCGAAATGAAAAACTCGTTATATCTATTTGTC-AATATTGTCAAGTATTGCACTATCCCTCAT----TACCCCCTCCCCTATTTATTTAAACAA-TTTACTATCGAAATATATAGATCATTTAAGCTGACGATCGATGAAGGTAAAATTATTGATTTTTTTTAAAATGATATTAAATTAGTCCGACTTTAGCCACAAAAATATAAGA-ATGAATACATTTGGTTGTCT-ACCATAGAAATGTAATATT-TAAA--TAAATCAAGA--TTGTTGTTTATAG-TAATTC-TATAAATG---AAGTGTTATCAGTA-AT-TATCGC--CAA----TTTTCCGGCAGGT--TTTACAC-GCTCCC--GTTTCG--TCGT-AAATTC-TGTGTTTCATTGGCTCGA-----------------AACTGTCTTTAGA-TACCACA-TTTGAAATAAATTTCCTCTTTTATTCCATA---GCCT-GATGTTTAA-C-TA--CATGACAGATAAACGACTATCACC-----------------AT---CGCAAACAAAACAATGTTGCATTT-TTAGCCAAGTCATTGAC-------------GGCTCAA------A-G--GGGGGGGGGGGGG------GTAAAGCTAGT---AAAAT-AACACTTTGTAAATTGTTTTATGTCCCCAACA-TCCACGCCGTTA--TGAATACTCCTAAAT---------TAG----AC-TAACAAAATTAAGA---------ATATT-----TTAAAA--A-TAG---AT--ACTGG-AAAAAATAA-CTTTGTTTGATCTTACGTG-ATCATATTA-GTCGTG-CGACATGATCCATGTATTTCAACATGTC--AAAATTCATGCAACA-T-AA-ATAGCTTCAGTACAAGTCAGTAGA-AGA-TGCCATACCATTGAAAA-ATATT-AAGTAA-T--AAAAG---AGGTAAAGCATA-TTT-AGGCCTAGCTAGGTTTATTT-CAAAAA-TGTC-TA-GG----AATGT--AGTAAAA-------GTTCT-AC---A-TGTA--GCTTTGCTAATT--ATA--TAACCCGA--AATATCG-GAC---TTTTTGTCAAAT-ATGAGGA--TGCTATTCAAATG--CAAACA---AT----GATC-AAT-CATAA----CAG---TACCAAAATAAATTCTACTTCCA-C--TAGCAAGATT-TA-C-GTT-G-T-TTCACA---TG-G-A-T-GTC----A---GCAAAGA--------------TTATC-TA-C--A-TCGA-TCTTTGACAATT--G-TTTACAAAAA--AACTG------ATCTT----GTGTA---AT-ATTCC---A--AGT-GCCGATGCCC---AA---T
gi|20 : ATTCAAATG--CAAACA---AT----GATC-AAT-CATAATTAGCAG---CACCAAAATAAATTCTACTTCCA-C--TA
gi|3 : CAAAAATATAAGA-ATGAATACCTTTGGATGTCTTACCATAGAAATGTTATATTGTAAGATTAAATCAAAAATTTTTA-CTTAGTAAT--TTCATATA----GATGAGTATTATCACCATATATATCGTTACAAAAGTTTCCCCGGCACGTAATTTTTACAGCTCCCAGGTTTCGGTTCGCCAAATTCCTGTGTTC-------TC-ATTGGCTCAAACGTCTTTAA----------A-TACCACATTTTGAAATTAATTTCCT-TTTTATTCCATA---GCCTTGATGTTTATACATA--CATGGGACATACAC--CTATCGGCGAAAACAAAAAACAAGGTTGGATGTAA-----------------TTGTTAGCCCAGTCAGTGACACTCACAAAAACAGGCCAGA------ACGCCGGGGGGGAGGAAGGGG--CGTAAAGTTAGTTAAAAAGTAGACACTTCGTAAATTCTTTTATGTCCCCAAAACTCCACGCCGTTAAGTACATATTCC----TAAAAAATAATAAGAAAACACAACAAAGTGAAGAGAGTGAATAATACTAATAATGAAAAGAA-TATTGAATGAACTGGTAGAAAATAAAC-TTGTTTGATCTTACGTGCATTCTATTATATGGTAACGA--TGATCCACATATTTCAACATGTCCCAAAATTCATGCTACAAT-AATATGGCCTCAGCACAAGTCA--AGATGGAGTGCCTTACCATTG-AAA-TTA-T-AGCTAATT--AAAGA---GGGTA-----T--TTC-AAGCATAGTTAGGTTTATTTAAAAAAAATGTCGTAAGGAATCAATATGTAGT-AAAATAAAATGTTCGTACGCAA-TGTAAAG----ACTAATT--ATG--AGACCCGACAAGTATCGAGACGCTTTTTTGTCAAATGATGAGAGCCTGCTATTCAAATGGCTGAACATAGGT----GATAGAATGCATAA----CAAGATCACCAAGACGAATTCTAGGTCCAGC--GAG-AAGATT-TAGCAGTT-G-TGTTCACAAAACGAGAA-TAGTCTCGTACCCGCACAGATTAGCATCGTTCTTTTATAGTAGC--G-TCGA-TC--------TTTCGCTTTAC-AAAA--AACTA------GATTT----GTGTA---AT-ATTCC---ACCATTTGCCGATGCCA---AA---TT-----A-CAA----AAGTCAACT--GCG--AATA---AATAG-AAGATTACT-TTATAGTGCTTGCACATTGCT----ATAAAA--TGTTATACTTT--TATTATTAGAAAA-AGAATCGGTTAAGAAA-GA--TTAGGTTAGGACAA-TCCCTGTTCAAGCAG
gi|4 : TCCATAATTGGCT-GATGTTTAT-C-TATGCATGGTAGATAAACGA-TATCACC-----------------TT----------------------------------CAGTCAGTGAC-------------GG-TCAAATTAGCACG--GGGGAGGGGGGGGGGGGCCGT-AAGTTAGT---AAAAT-GG-ACTTCGT--GTTGTTTTAT------AACA-T-CACG-CGTTA--TAC--ATTTC----T---------TAG----A--CAAC-AAATTAGAA---------ATATT-----TTAAAA--ATTAT---AT--ACTGG-AG-TAATAA-C-TTGTTTGATCTTACGTG-A-AATAGTA-GTCGTG-CGACATGATCCACGTATTTC-ACATGTC----AATTCATGCTACA-TAAA-ATGGATTGAGCA-AAGTCAGTAGATAGA-TG-CATACCATTG-AAA-ATA-T-AATTAATT--AGAGG---CGGTAAAG-ATA-TTTAAGGTCTGGTTAGG-TTATTTAAAAAAA-TGTC-TG-GGAATTGATAT--GTT-AAA-------GTTCA-AC---A-TGTA--GCTTTATTAATTAAATATTTGA-TCGA--AAT-TCG-AAC---TTTTTGTCAAAT-ATGAGGA--T----------------AATA---ATTC--GATC--AT-CATAA-----AG---CACCAAAA-AA--TCTACTTCCA-C--TAGCAATATTCTA-C-GTT-GTT-TTCACA---CG-GAA-T-GTC----A---GCAAAGATT--CATCATTATTTTATC-TA-T--GATCGA-TC--------TT--G-T------AAA--AACTGTGGGGCGGTTG----GTGCA---ATAATTTC---A--AGT-G-CGATGCTC---AA----------GACAA----GAGTCC--G--GCG--GACATAAAATAGAAA-ATTACCGTAGCGGCGCTTCCA-AT-GCT----AT---GAATTT-AGACTTTTATATTATTAT-CAAC-AAATCG--TATAAAATGGGTTTA--TT-TGAC-A-T-TTTG-TC-AGCAGATTTACT--ACGTATAGTATGCCG--TGTAAAA--ACTTGACAACGGTA
gi|5 : A-TGTCATACCATTG-AAATATA---AAGTAATT--AG--GTTTATCTAAAAAAAA-TTC-----TTTGTT---TTTTTTTA-------TGTA-TA-GGAAT----AT--AGT-AAAA------GTTCT-AC---A-TGTA--GCTTTGCTAAAT--ATA--TGACCCGA--AATATCG-GAC---TTTTTGTCAAA--ATGAGGA--TGCTATTCATATG--CAAACA---AT----GATC-AAT-CATAA----CAG---CACCAAAATAAATTCTACTTCCA-C--TAGCAAGATT-TA-C-GTT-GTT-TTCACA---CG-GAA-T-GTC----A---GCAAAGATT--CATCATTCTTTTATC--A-C--G-TCGA-TCT-------TT--G-TTTAC-AAAA--AACTG------ATTTT----GTGTA---AT-ATTCCAGAA--ATT-ACCGGAGCGC--------TT-----G-CA---------CA--T--GC-----TATAAAA-AA-AA-AT-------GTAG-ACTT--------TT----AT-------------------TATT---ATAAAAC-AAATCG--TAAAAAATGA--TTA--TT-TGACAA-T-TTTG-TCAAGCAGATTTAC---ACATA---TATGCTGC-TGT-AAA--ACTTAACAACGGTAGTAAagttagtaagcctaaaatattagcaagtacatgaattcttcatttgacattgtggtgggagagcatctacgtagtcgtgagcactttttcattgtgacgtcatatgtgggtgagcacttttgtcattgtgacgtcataagtgggaaatgtcggaagtactcagaggttatctccctgtttgtttgaacgctgacctt
gi|6 : AAAA--A-AAAT-TG-TCCGT-GT-GGTTTTTTGACCAGACGGG--TTTAA-TTTTGTGA-TGTTA------TGC-ATT---TTCTGGA---A---T--TTT-GTAA---AAA----GAA-AACACTTG--CTATATTCATGTATA---TAAAAA-CTACACA----CGGCAAACTTAC------TGGGTGA-A--------------AAGGTGATAT-AGTTTTA-AA------AAGAGTTATATA----TATTA-AGT---TCTGCCATTTG-GTAGA------TGAAATTTGAG-TTAAA--AACAC-AAAAAT---AACATTTTT-TATACATTTGAT-----CAAAGTGAAAGTGGTTGTCATGACAACAAAAAAG-GCATGTTGAACAGCTTTG--TAAGACCTACGT-----AAAAAAA---CATTTTTAAC-ATGA-AATTGAGA-TGATAAAGATTCATAAAAGCA--A-CTAA-AAGGAC-TA-CCAACCCGGCT---------TGTT-TCGATA-GTAACC--AATACAAAATAGTTTATG-------TCTCTTCGTTTTATCAgcctaaataacaacttcatttgtgtattcagaaagacctgtgatgcagagctctacgtagtcgtgacacactttttctatgtgacgtataatgtgggaatgtacggaggtacatccagagttatctccctgttgttgcaaacctcac
gi|7 : TT-TA-C-GTTTG-G-TTCACA---CG-GAAAT-GTC----A---GCAAAGAT-----------------C-TA-C--G-CTGA-TC--------TTT-G-TTTCA-AAAA--AACTG------ATCTT----GTGTA---AT-ATTCC---A--AGT-GCCGATGCCC---AATATTT-----A-C-A----AAGTCA--CTAGCGA-GACAT-AAATAG-AA-ATTACC---GTAGCGCTTGCACAT-GCA----ATAAAAAATGT-AGACCTT--TATTATTATAAAAACTAATCG---AATAAATGA--TCAG-TT-TGACAA---TTTG-TCAAGCAGATTTACCATATATAC--TATACCGC-TGT--AA--ACTTAACAACGTTAGTAAt
gi|8 : ATATGAATTTTT-CATATCATAAGAG---TATAACATTAGTACAGTACATATGTGAATTCTGTTGAAAGGAATCAATTTTGAACTTCAATAAACACAAAAAATTAGAGCACTCTTATCCATCTTTGATTCCATATAATTCAA-GTGGTTGCAATAACA----------GT---TT------CTTTAGATAAGACCTACGTCATACAAAAAAATTCCACTTTTAACAATAATAATTTCAATTCACTAAGATTGCT-AAAGCATTATCTAACAAATATCTGTCCAACGTTGCTTTTTTGTTGTGTCATCCCTG-GTAACCAAATT---ACACCATTtcctaaataacagaagtacatgacattctttcattgtgtgttattcagaaggacattgatgcagagctctacgtagtcgtgacgcactttctcatctgtgt
gi|9 : TTACC---GTAGCGCTTGCACAT-GCT----A-AATAAATGT-AGACTTT--TACAATTATAAAACAAAATCG--TATTGAATGA--TTA--TT-TGAC-A-T-TTTG-TCAAGCAGGTTTAC---ACA-----TATACCGCTTTT-AAAATACTTGACAACAGTAGTAAcacttt
4 sequences could not be aligned to this reference sequence:
Unaligned ( gi|13 ): ATTTGTGTATTCAGAAGGACCTGTGATGCAAAGCTCTACGTAGTCGTGACTCACTTTTTCATTGTGACGTCATAATGTGGGTGACGCATTTTTCATTGTGACGTCATAAAGCGGGAAATATACGGAGGTCATCCAGAGTTATCCCCCTGTTGTTGCTGACCTGATTAAATTA
Unaligned ( gi|15 ): AGAGCTTCTACGTAGTCGTGACGCAACTTTTTCATTGTGACGTCCATAATGTGAGTGACACACCTTTTCAATTGTGAACGCCAATAAAGTGGGAAATGTACGGAGGTACATCAGAGGTATCTCCCTGT
Unaligned ( gi|21 ): ACGAGTTATCTCCCTGTTGTCGCAAACCTGACCTTAAACAAATTTTGTAGTTTATGAAATA
Unaligned ( gi|22 ): GATACATCAAGAGTTATCTCCTTGTTGTTGCAAA