lowQualScore : 11111111111111111111111111111
lowQualScore : 1 1 11 11 11 11111111 111 1 1111 33 1 1 11111111111111111111111111111 11111 2222 111 11 1 222222 444444444444 22 111 22222222222 111 66666666666666 11 888888888888888888 111 222222222 111
lowQualScore : 6 3 4 5 0 3 6 2 66 6 3 6 6 99 6 3 2 6 1 55 6 4 6 77 22 6 22222222 22 222 1 3 0 3 4444 44 5 4 1 6 3 33 7 3 3 7 99999999999999999999999999999 44444 6666 8 333 00 6 6 7 6 000000 8 1 777 88 111111111111 66 44 000 8 8 77777777777 1 666 33333333333333 0 55 8 11 1 8 6 444444444444444444 1 8 1 444 0 1 1 5 000000000 111 3 6 6
lowQualScore : . . . . . . . . .. . . . . .. . . . . . .. . . . .. .. . ........ .. ... . . . . .... .. . . . . . .. . . . . ............................. ..... .... . ... .. . . . . ...... . . ... .. ............ .. .. ... . . ........... . ... .............. . .. . .. . . . .................. . . . ... . . . . ......... ... . . .
lowQualScore : 6 0 8 2 7 3 7 5 22 7 5 7 7 22 7 3 2 7 0 55 8 8 0 55 00 0 22222222 77 000 0 2 8 2 2222 22 0 7 8 7 2 88 0 5 5 5 11111111111111111111111111111 33333 7777 4 777 33 7 0 0 7 222222 0 4 666 88 000000000000 22 00 888 2 0 22222222222 5 222 44444444444444 8 88 8 00 4 0 5 777777777777777777 0 0 4 000 8 4 0 4 444444444 777 5 7 7
consensus : ATATACTAATCAAAATTTCTAACGCCCCAGCAAACNTTTCGNATTGCACTGTTT-TTCTATTCGATTATTTTGACTATAACGTTTGATCAGTATAAAGAATAAAAA-GAAAC--AAAAC-AAA-TATT-TTCACCGAATCAATTTTTATTCAAGTTGCACGATN-TTTTGGCCGTCGAGGCNGNTCGTCTACACTTCCGGTTCTGTAGAATTTCCGGANAAGTCTTAAGATAGTTTTGTGGTC----TCTGTTGAAATNTCNGGCGACCTGTAATAAATTCAAATTACGTCCGTTAATTTGTAAAGAACGAAATCGAGAATTTGAG-----TTAG---ACA-GTTTGTAAGCACAAACA-----ACAAATATAGTGAAGGAAAA-ACAAACCTCTCTTAA-ACTGCGCCCAGCTTGGACCATGCCAACGGCTCTTGCGCGTTCTT-GTGTAGACATGCGCCGCAT-TATACACAACTGTTTTCTTGTTTTTC-GAAT----ACA----ACTAACTCTAGAGAACACGTGGATACTAAACC-TTTCAAGAGA-AAAACC---CGG--GAAAAT-TCTCGAAAT--CGCTCATCACGCTTTTCAACAATAANGGTCACGGTCGAGTA--ACTA-CAAATTCGATTGCAATTT--TTTTTGG-C-TAAACAGTTC-AGCATTGTAAAAGG---CAAACAATATTAAAGTCCATTGATCATAAATTCTGAAATAGTTTTCAA---ACNTTTGAGAAATAAAAGTG---GGGCGT-TAGAAATTTTGACC-AGTAT
Reference ( gi|1 ) : ATATACTAATCAAAATTTCTAACGCCCCAGTAAACCTTTCGAATTGCACTGTTT-TTCTATTTGATAATTTTGACTATAACGTTTGATTAGTATAAAGAATACAAA-GAAAC--AAAAC-AAA-TGTT-TTCACCGAATCTGTTTTTATTTAAATTGCACGATC-TTTTATCCGTCGGGGCAATTCGTGTACACTTCCGGTTCTGTAGGATTTCCGGAGAAGTCTTAAGATAGGTTTGTGGTC----TCTCGTGACATTTCTGGCGACCGGTAATAAATTCAAATTACGTCCGTTGATTTGTAAAGTATAAAATTAAAAATTTCAG--TC-TTAGTATACATGTTTGTATTCACAAACA-----ACAAATAAAAAGAAGGAAAA-ACAAACTTCTCTTAA-ACTGCGCCCAGCTTGGACTATGCCATCGGCTCTTGCGCGTTCTT-GTGTAGACTTGCATCGCAT-TATACATAACTGTTTTCTTGTTTTTT-GAAT----TTA----TCTAACTCTAGAGAACACGTGCGTACTAAACT-TTTCAAGAGG-AAAACC---TGG--GAAAAT-TCTCGAAAT--TGCTCATCTTTCTTTTCAACAATAACGGTCACGCTCGAGTA--ACTA-CAAATTCGATTGCAATTT--TTTTTGGTC-TAAACAGTTC-AGCATTGTAAAAGG---CAAACAATATTAAAGTCCATTGATCATAAATTCTTAAATAGTTTTCAA---ATTTTGGAGAAATAAAAGTG---GGACGT-TAGAAATTTTGACC-AGTAT
gi|2 : ATATATTAATCAACATCTGTAACGCCCTATGAAACTTTTTGAATTACATTGCTT-TTATATTCAATTATTTTGACTATAACGTTGGATCAGTATTCAGAATAAAAA-GAAAT--AAAAC-AAA-AAAAATTCATTAAAGTAATTTTTATTCAAACAGCAAGAT------GTCCATCGAAGGGA-----GT------CCGGTTCTGAAGAATTTCTGGACAAGTATTAAGATAGTATTGCTGTC----TCTGTTGAAATATCCGACGACCTGTAATGATTATAAATTACGTATGC-AATTTGTAAAAAACAAAATTGACAATTTGAG--AA-CTA----------TTGTAAGCACAAACA-----ACAACTATTGTGAAAGAAAA--CAAACCTGTCCTAA-TATTCACCCTGTGTGGACCATGTTAACGGCTCTTTTGAGTT-TT-GTGTCGACATGAGCCGCATATATTC-TAACTGTTTTCTTCTTTTTTAGAAC----ACA----ACTTACTCTAGAAATCA-----------------TTCAA-AGG-GAAACA---CGG--AAAACA-TCTCGAAAT--CGTTCAACATGTTTTTCAATGATGAAGCTCGCGGTCGAATA--ACAG-CAAACTCGATTGCATTTTGTTTTTTGG-C-TCAACAGTTC-AGCATTGTAAAAAAAATCAAACAATACTGAAGTTCATTGTTCATAAATTCTTAATTAGTATTAAA---ACCTTTGAGAAATAAGAATG---GGGTGT-TAGAATTTTTGACC-AGTAT
gi|13 : tACATAATAATCAAAATCTTTAACGCCCCAGCAAACACTTTGCATTGCACTGTGT-TTCTGTTCAATTATTTTCACTATAACGTTTGATCAGTATGAGGAATAAAAA-TAAAC--A-----AAA-TGTT-TTCACCGAATCAGTTTTTATTGAAa
gi|2 : ttTATACTGGTCAAAAATTCTAACACCCCA
gi|8 : tatatattaatcaacatctgtaacgccctatgaaactttttgaattacattgcttttatattcaattattttgactataacgttggatcagtattcagaataaaaagaaataaaacaaaaaaaattcattaaagtaatttttattcaaacagcaagatgtccatcgaagggagtccggttctgaagaatttctggacaagtattaagatagtattgctgtctctgttgaaatatccgacgacctgtaatgattataaattacgtatgcaatttgtaaaaaacaaaattgacaatttgagaactattgtaagcacaaacaacaactattgtgaaagaaaacaaacctgtcctaatattcaccctgtgtggaccatgttaacggctcttttgagttttgtgtcgacatgagccgcatatattctaactgttttcttcttttttagaacacaacttactctagaaatcattcaaagggaaacacggaaaacatctcgaaatcgttcaacatgtttttcaatgatgaagctcgcggtcgaataacagcaaactcgattgcattttgttttttggctcaacagttcagcattgtaaaaaaaatcaaacaatactgaagttcattgttcataaattcttaattagtattaaaacctttgagaaataagaaTATACTAATCAAAATTTCTAATGCCGCAGCAATCATTTTGTATTGCACAGTTT-TTCTATAGAATTATTTTGACTATGACGTTTGACTAGTATAAAGAATAAAAA-GAAACCAAAAACAAAA-TATT-TTCG-CGAATC-ATTTTTATTTAACCTGCACG-TCGTTTTGGCCATCAAGGCAGGTCGTCCACATTT
gi|15 : TATAATGGTCAAAATTTCTAACGTCCCAggctg
gi|6 : tttggcctaaacagttcagcattgtaaaaagcaaacaatattaaagtcaattgatcatacattcggaaatagttttcaaacatttgagaaataaaagATA-TAATCAAAATTTCTAATGCCCCAGTAAACCTTTCGAATTGCACTGTTT-TTCTATTTGATTATTTTGACTATAACGTTTGATCAGTATAAAGAATACAAA-GAAAC--AAAAC-AAAATATT-TTCACCGAATCTATTAATATTCAAGTTGCACGATC-TTTTAGCCGTCCAGGCAATTCGTCTACACTTCCGGTTCTGTAAAATTACCGGAGAAGTCTTGAGATGGTTTTGTGGTT----TCTGTTGAAATCTCGGGCGACCGGTAATAAATTCAACTTACGTCCGTTGATTTATAAATAACGAAATTGAGAATTTGAG--AC-TTAGTATCCATGTTTGTAAGTACAAACA-----ACAAATAAAGCGAAGG-AAA-ATAAACTTCTC
gi|5 : taACTAATAAAGATTT-TATCGCCCCAGCAAACATTTTACATATCACAGTT--------------ACTTTGACTATAACGTTTGATCAGTATAAA-AATAAAAAAGAAAC--AAAAC-AAACTGTT-TTCACTGAATCAAATTTTATTCAAGTTGCACGGTG-TTTTGGCCTTTGAGGCTGATCGACTATACTTCCGTTTCTGT---------GGAAA----TTTAGGTAGTTTTGTGGTC----TCTGTTGAAATTTCTGGAGTCCTGTAACGAATTCAAATTACTTCCATGAATTTGTAAAGAATGAAACTGAGAATT--AG-------AG---AAAAACTTGTAAACACAAACA-----GCAAATATAGTGAAGG-AAA-ACAAACCTCTCTTAA-ACTACACCCAGCTTCGACCATGCCAACATCTCTTGCGCGTTCTT-GTGAAGAC
gi|3 : AAACCATTCGAATTGCACTGCTTATTGTATTTGATTATTTTGATTATAAGGTTTGATCAGTATAAAGAATACAAA-GAAAC--AAACA-AAA-TCTT-TTCACCGAATCTATTTTTATTAAAGTTTCACGATA-TTTTAGCCGTCAAACCCATTCCTCTGGACTTTTGGTTCTGTAGAATTTCCGGCGAAGTCATAAGATATATTTGTAGAC----TGT--TGAAATCTCTGGCGACCGGTAATAAATTCAAATTACGTCCGTTGATTTGTAAAGAACAAATTTGAGAATT-----------------CATGTTTGTAAGCACAAACA-----ACAAATAAAGCGAAGGAAAA--CAAACTTCTCGTAT-ACTGCGACCAGCTTGGACCATGCCAATGACTCTTGTGCGTTCTT-GTGTAGACATGCACCGCAT-TATACACAACTGTTTTCTTGCTTTTT-TAAT----ATA----ACTAACGTTAGAGAACATGTGGGTACTacgtgc
gi|4 : TGCATGTTA-TTTTGGCCGTCGAGGCAGGTTGTCTACACTTCCGTTTTTGTTGAATTTCCGAACAAGTCTTAAGATGGTTTTGTGATCGCTGTCTGTTTAAATATCAGGCTACCTCTAATAAATTCAAATTACTTCCGTTAATTCGTATAGAACAAAATCAAGGTTTTGAGAACCATTAGTATATA------------CAAACA-----ACAAATATAGTGCA---AAA-ACAAACCTCT-TTAACACTGCGCCCAGGTCGGACCATGCCAATGGCTCTTGCGCGTTCTT-GTGCA----TG-------T-TACGCAC--CTGTTTTCTTGTTTTTC-GAATACAACTA----ATTAAATCTAAAGAACACGTGGATAGAAGAAT-ATTCAATCTA-AAAA------------AAAT-CCTGGAAA---------------------ACA-TAAAGGTTACAGTTGAGTA--ATTA-CAAATTCGATg
gi|14 : ttctgttgacgtgtcgaTGGTA----TCTGTTTAAATTTCTGGCGACCTATAATAAATTCAA---ACGTCTATTAACTTGTATAGAACAAAGTCGAGAATTTGAG-------A----ACA-ATTTGTAAGCACAAACA-----ACAAATATAGTAAAGGAAAA-A-AAACT
gi|11 : TTGTAAGCACAAATACGGTAATAAATATAGTGAAGGAAAACAAAAACTTCG--TAA-ATTGCTACCAGCTTGGACCCTGCCAACGGTTCTTGTGCGTTCTTTGTGTAGATATGCGCCGTAT-TTTACGCAGCTGGTTTCTTGTTTTTA-GAAT----ACA----GCTAACTGTAGAGAAct
gi|10 : A-ACTGCGCCCAGTTTGTACCAATCCAACGGCTCTTCCACGTTCTA-GTATAGACAGGTACCGCAA-TTTACACAATTGTTTTCTTTTATGTA-AAAT----ACA----ACTAACTTGAAAGAACACTTGAATACTAAACC-TTTCAAGAGA-AAAACA---CGG--AAACA--TCTGAAAAT--CCCTCATTATGCTTTTCACTAATg
gi|7 : TTCT-GAAG----TTAAAATTCCATCCCTAG-------GCGGATACTAAACCATTTCAAGAGA-AAAACCGCTTTA--TAACAT--CTCGAAAT--CGCTACTCACGCCTTTCAACAATA-CGGTTACGGTTGTGTATAACTAACAAATT---TT---ATT-------------------------GCATTGTACAGGC---TAACCAATATTAAG--CCATTGATAATAAATT-TGAAATAGTTTTAAAAACACTTT-GAGAAATGAAAGTGGCCGGGTATATAGAAATTTC--CCAAGTAT
gi|16 : CTCTAGAGAACACATGT-TACTAAACT-TTTCAAAAGGAAAAACC---CGG--GAAAAA-TCTCGAAAT--CGCTCa
gi|9 : AAAC---TGGAAGAAGATGTTTCAAGATCATGCT--------TTTTCAACAATAACGGTCACGCTCGAATA--ACTA-CAAATTCGATTGCAA------------------ACAGTTTTAGCATTGTAAAATG---CAAACAATAT---AGTCCTTTGTTCATAAATTCTTAAATAGTCTTCAA---ACATTTGAGAAATAAAAGTG---GGGCGT-TAGAAATTTTGACC-gat
gi|12 : TA--ACAA-CAAATTCGATTACAATGT--TTT---GTCCTAAACAGTAC-AGCATTGTAAAAGG---CAAACAATATTAAAGTCCATTGATCATATATTCTGAAATAGATTTCAA---ACCTTTGACAAATAAAAGTG---GGGAGT-AAGATATTTTGACC-AGTA
gi|15 : TTTGGCC-TAAACAGTTC-AGCATTGTAAAAAG---CAAACAATATTAAAGTCAATTGATCATACATTCGGAAATAGTTTTCAA---ACATTTGAGAAATAAAAGTG---GGACGT-TAGAAATTTTGACC-ATTAT
gi|8 : TG---CGGCAT-TAGAAATTTTGATT-AGTATa
Alignments
lowQualScore : 1 1111 8888888888888888 11111 1 11 1111 11 444444444444444444 111 111
lowQualScore : 5 5 1 1 5 0 44 1 5 77 5 1 0 5 9 1 0 1 0 5 1 6 6 3 2222 1 1 1 1 1 1 7777777777777777 5 22222 0 8 1 1 5 5 1 55 6 1 33 2222 88 6 666 99 3 77 4 6 3 1 99 6 3 888888888888888888 6 111 2 6 77 111 6 6
lowQualScore : . . . . . . .. . . .. . . . . . . . . . . . . . . .... . . . . . . ................ . ..... . . . . . . . .. . . .. .... .. . ... .. . .. . . . . .. . . .................. . ... . . .. ... . .
lowQualScore : 2 2 0 0 7 7 44 3 7 99 7 4 9 7 1 7 6 0 4 7 0 6 7 3 1111 0 0 3 4 4 7 9999999999999999 0 55555 8 5 4 5 7 7 7 77 7 7 00 1111 77 7 888 22 7 00 8 7 8 0 22 7 2 666666666666666666 7 777 5 7 77 777 7 7
consensus : ATATACTAATCAAAATTTCTAACGCCCCAGCAAACNTTTCGAATTGCACTGTTT-TTCTATTCGATTATTTTGACTATAACGTTTGATCAGTATAAAGAATAAAAA-GAAAC--AAAAC-AAA-TGTT-TTCACCGAATCNATTTTTATTCAAGTTGCACGATGTTTTGGCCGTCGA-GGCAGNTCGTCTACACTTCCGGTTCTGTAGAA-TTTCCGGAGAAGTCTTAAGATAGTTTTGTGGTC----TCTGTTGAAATNTCTGGCGACCTGTAATAAATTCAAATTACGTCCGTTGATTTGTAAAGAACGAAATCGAGAATTTGAG----AA---A--CATGT-TTGTAAGCACAAACA-----ACAAATATAGTGAAGGAAAAACAAACCTCTCTTAA-ACTGCGCCCAGCTTGGACCATGCCAACGGCTCTTGCGCGTTC-TTGTGTAGACATGCGCCGCAT-TATACACAACTGTTTTCTTGTTTTTC-GAATACAACTAACT----CTAGAGAACACGTGGATACTAAACC-TTTCAAGA-GAAAAACC-CGGGAAAAN-TCTCGAAATCGCTCATCATGCTTTT-CAACAATAACGGTCACGGTCGAG--TAACT-ACAAATTCGATTGCAATT--TTTTTTGG-C-TAAACAGTTC-AGCATTGTAAAAGG---CAAACAATATTAAAGTCCATTGATCATAAATTCTNAAATAGTTTT-CAAAC-CTTTGAGAAATAAAAGTG---GGGCGT-TAGAAATTTTGACC-AGTAT
Reference ( family-382 ) : ATATACTAATCAAAATTTCTAACGCCCCAGCAAACNTTTCGNATTGCACTGTTT-TTCTATTCGATTATTTTGACTATAACGTTTGATCAGTATAAAGAATAAAAA-GAAAC--AAAAC-AAA-TATT-TTCACCGAATCAATTTTTATTCAAGTTGCACGATNTTTTGGCCGTCGA-GGCNGNTCGTCTACACTTCCGGTTCTGTAGAA-TTTCCGGANAAGTCTTAAGATAGTTTTGTGGTC----TCTGTTGAAATNTCNGGCGACCTGTAATAAATTCAAATTACGTCCGTTAATTTGTAAAGAACGAAATCGAGAATTTGAG--TTAG---A--CA-GT-TTGTAAGCACAAACA-----ACAAATATAGTGAAGGAAAAACAAACCTCTCTTAA-ACTGCGCCCAGCTTGGACCATGCCAACGGCTCTTGCGCGTTC-TTGTGTAGACATGCGCCGCAT-TATACACAACTGTTTTCTTGTTTTTC-GAATACAACTAACT----CTAGAGAACACGTGGATACTAAACC-TTTCAAGA-GAAAAACC-CGGGAAAAT-TCTCGAAATCGCTCATCACGCTTTT-CAACAATAANGGTCACGGTCGAG--TAACT-ACAAATTCGATTGCAATT--TTTTTTGG-C-TAAACAGTTC-AGCATTGTAAAAGG---CAAACAATATTAAAGTCCATTGATCATAAATTCTGAAATAGTTTT-CAAAC-NTTTGAGAAATAAAAGTG---GGGCGT-TAGAAATTTTGACC-AGTAT
gi|1 : ATATACTAATCAAAATTTCTAACGCCCCAGTAAACCTTTCGAATTGCACTGTTT-TTCTATTTGATAATTTTGACTATAACGTTTGATTAGTATAAAGAATACAAA-GAAAC--AAAAC-AAA-TGTT-TTCACCGAATCTGTTTTTATTTAAATTGCACGATCTTTTATCCGTCGG-GGCAATTCGTGTACACTTCCGGTTCTGTAGGA-TTTCCGGAGAAGTCTTAAGATAGGTTTGTGGTC----TCTCGTGACATTTCTGGCGACCGGTAATAAATTCAAATTACGTCCGTTGATTTGTAAAGTATAAAATTAAAAATTTCAGTCTTAGTATA--CATGT-TTGTATTCACAAACA-----ACAAATAAAAAGAAGGAAAAACAAACTTCTCTTAA-ACTGCGCCCAGCTTGGACTATGCCATCGGCTCTTGCGCGTTC-TTGTGTAGACTTGCATCGCAT-TATACATAACTGTTTTCTTGTTTTTT-GAATTTATCTAACT----CTAGAGAACACGTGCGTACTAAACT-TTTCAAGA-GGAAAACC-TGGGAAAAT-TCTCGAAATTGCTCATCTTTCTTTT-CAACAATAACGGTCACGCTCGAG--TAACT-ACAAATTCGATTGCAATT--TTTTTTGGTC-TAAACAGTTC-AGCATTGTAAAAGG---CAAACAATATTAAAGTCCATTGATCATAAATTCTTAAATAGTTTT-CAAAT-TTTGGAGAAATAAAAGTG---GGACGT-TAGAAATTTTGACC-AGTAT
gi|10 : A-ACTGCGCCCAGTTTGTACCAATCCAACGGCTCTTCCACGTTC-TAGTATAGACAGGTACCGCAA-TTTACACAATTGTTTTCTTTTATGTA-AAATACAACTAACT----TGAAAGAACACTTGAATACTAAACC-TTTCAAGA-GAAAAACA-CGGAAACA--TCTGAAAATCCCTCATTATGCTTTT-CACTAAT
gi|11 : -TTGTAAGCACAAATACGGTAATAAATATAGTGAAGGAAAACAAAAACT-TCGTAA-ATTGCTACCAGCTTGGACCCTGCCAACGGTTCTTGTGCGTTCTTTGTGTAGATATGCGCCGTAT-TTTACGCAGCTGGTTTCTTGTTTTTA-GAATACAGCTAACT----GTAGAGAA
gi|12 : --TAACA-ACAAATTCGATTACAATG--TTTTGTC--C-TAAACAGTAC-AGCATTGTAAAAGG---CAAACAATATTAAAGTCCATTGATCATATATTCTGAAATAGATTT-CAAAC-CTTTGACAAATAAAAGTG---GGGAGT-AAGATATTTTGACC-AGTAg
gi|13 : ACATAATAATCAAAATCTTTAACGCCCCAGCAAACACTTTGCATTGCACTGTGT-TTCTGTTCAATTATTTTCACTATAACGTTTGATCAGTATGAGGAATAAAAA-TAAAC--A-----AAA-TGTT-TTCACCGAATCAGTTTTTATTGAA
gi|14 : ttTGGTA----TCTGTTTAAATTTCTGGCGACCTATAATAAATTCAAA---CGTCTATTAACTTGTATAGAACAAAGTCGAGAATTTGAG-----A---A--CA-AT-TTGTAAGCACAAACA-----ACAAATATAGTAAAGGAAAAA-AAA-CTCT
gi|15 : TTTGG-CCTAAACAGTTC-AGCATTGTAAAAAG---CAAACAATATTAAAGTCAATTGATCATACATTCGGAAATAGTTTT-CAAAC-ATTTGAGAAATAAAAGTG---GGACGT-TAGAAATTTTGACC-ATTAT
gi|16 : CT----CTAGAGAACACATGT-TACTAAACT-TTTCAAAAGGAAAAACC-CGGGAAAAA-TCTCGAAATCGCTCa
gi|2 : ATATATTAATCAACATCTGTAACGCCCTATGAAACTTTTTGAATTACATTGCTT-TTATATTCAATTATTTTGACTATAACGTTGGATCAGTATTCAGAATAAAAA-GAAAT--AAAAC-AAA-AAAAATTCATTAAAGTAATTTTTATTCAAACAGCAAGATGT-----CCATCGAAGGGAG------------TCCGGTTCTGAAGAA-TTTCTGGACAAGTATTAAGATAGTATTGCTGTC----TCTGTTGAAATATCCGACGACCTGTAATGATTATAAATTACGTATG-CAATTTGTAAAAAACAAAATTGACAATTTGAG-----A---A--C---TATTGTAAGCACAAACA-----ACAACTATTGTGAAAG-AAAACAAACCTGTCCTAA-TATTCACCCTGTGTGGACCATGTTAACGGCTCTTTTGAGTT--TTGTGTCGACATGAGCCGCATATATTC-TAACTGTTTTCTTCTTTTTTAGAACACAACTTACT----CTAG----------------AAATC-ATTCAA-A-GGGAAACA-CGGAAAACA-TCTCGAAATCGTTCAACATGTTTTT-CAATGATGAAGCTCGCGGTCGAA--TAACA-GCAAACTCGATTGCATTTTGTTTTTTGG-C-TCAACAGTTC-AGCATTGTAAAAAAAATCAAACAATACTGAAGTTCATTGTTCATAAATTCTTAATTAGTATT-AAAAC-CTTTGAGAAATAAGAATG---GGGTGT-TAGAATTTTTGACC-AGTATgat
gi|3 : tAAACCATTCGAATTGCACTGCTTATTGTATTTGATTATTTTGATTATAAGGTTTGATCAGTATAAAGAATACAAA-GAAAC--AAACA-AAA-TCTT-TTCACCGAATCTATTTTTATTAAAGTTTCACGATATTTTAGCCGTCAA-ACCCATTCCTCTGGACTTTTGGTTCTGTAGAA-TTTCCGGCGAAGTCATAAGATATATTTGTAG------ACTGTTGAAATCTCTGGCGACCGGTAATAAATTCAAATTACGTCCGTTGATTTGTAAAGAACAAATTTGAGAATT----------------CATGT-TTGTAAGCACAAACA-----ACAAATAAAGCGAAGG-AAAACAAACTTCTCGTAT-ACTGCGACCAGCTTGGACCATGCCAATGACTCTTGTGCGTTC-TTGTGTAGACATGCACCGCAT-TATACACAACTGTTTTCTTGCTTTTT-TAATATAACTAACG----TTAGAGAACATGTGGGTACTa
gi|4 : TGCATGTTATTTTGGCCGTCGA-GGCAGGTTGTCTACACTTCCGTTTTTGTTGAA-TTTCCGAACAAGTCTTAAGATGGTTTTGTGATCGCTGTCTGTTTAAATATCAGGCTACCTCTAATAAATTCAAATTACTTCCGTTAATTCGTATAGAACAAAATCAAGGTTTTGAG-----A---A--CC-AT-TAGTATATACAAACA-----ACAAATATAGTGCA---AAAACAAACCTCT-TTAACACTGCGCCCAGGTCGGACCATGCCAATGGCTCTTGCGCGTTC-TTGTG----CATG-------T-TACGCAC--CTGTTTTCTTGTTTTTC-GAATACAACTAATTAAATCTAAAGAACACGTGGATAGAAGAAT-ATTCAATC-TAAAAA--------AAAT-CCTGGAAA--------------------ACA-TAAAGGTTACAGTTGAG--TAATT-ACAAATTCGATg
gi|5 : ttctgttgacgtgtcgaACTAATAAAGATTT-TATCGCCCCAGCAAACATTTTACATATCACAGTT--------------ACTTTGACTATAACGTTTGATCAGTATAAA-AATAAAAAAGAAAC--AAAAC-AAACTGTT-TTCACTGAATCAAATTTTATTCAAGTTGCACGGTGTTTTGGCCTTTGA-GGCTGATCGACTATACTTCCGTTTCTGTGGAAATTT--------------AGGTAGTTTTGTGGTC----TCTGTTGAAATTTCTGGAGTCCTGTAACGAATTCAAATTACTTCCATGAATTTGTAAAGAATGAAACTGAGAATTAGAG----AA---A---A-AC-TTGTAAACACAAACA-----GCAAATATAGTGAAGG-AAAACAAACCTCTCTTAA-ACTACACCCAGCTTCGACCATGCCAACATCTCTTGCGCGTTC-TTGTGAAGACACGTGC
gi|6 : ATA-TAATCAAAATTTCTAATGCCCCAGTAAACCTTTCGAATTGCACTGTTT-TTCTATTTGATTATTTTGACTATAACGTTTGATCAGTATAAAGAATACAAA-GAAAC--AAAAC-AAAATATT-TTCACCGAATCTATTAATATTCAAGTTGCACGATCTTTTAGCCGTCCA-GGCAATTCGTCTACACTTCCGGTTCTGTAAAA-TTACCGGAGAAGTCTTGAGATGGTTTTGTGGTT----TCTGTTGAAATCTCGGGCGACCGGTAATAAATTCAACTTACGTCCGTTGATTTATAAATAACGAAATTGAGAATTTGAGACTTAGT--ATCCATGT-TTGTAAGTACAAACA-----ACAAATAAAGCGAAGG-AAAATAAACTTCTC
gi|7 : taGCGGATACTAAACCATTTCAAGA-GAAAAACCGCTTTATAACATCTCGAAATCGCTACTCACGCCTTT-CAACAAT-ACGGTTACGGTTGTGTATAACTAACAAATTTTATT-------------------------------GCATTGTACAGGC---TAACCAATATTAAG--CCATTGATAATAAATT-TGAAATAGTTTTAAAAACACTTTGAGAAATGAAAGTGGCCGGGTATATAGAAATTTC--CCAAGTAT
gi|8 : ttctgaagttaaaattccatccctagTATACTAATCAAAATTTCTAATGCCGCAGCAATCATTTTGTATTGCACAGTTT-TTCTATAGAATTATTTTGACTATGACGTTTGACTAGTATAAAGAATAAAAA-GAAACCAAAAACAAAA-TATT-TTCG-CGAATC-ATTTTTATTTAACCTGCACGTCGTTTTGGCCATCAA-GGCAGGTCGTCCACATTTa
gi|9 : ATCATGCTTTTTCAACAATAACGGTCACGCTCGAA--TAACT-ACAAATTCGATTGCAA------------------ACAGTTTTAGCATTGTAAAATG---CAAACAATAT---AGTCCTTTGTTCATAAATTCTTAAATAGTCTT-CAAAC-ATTTGAGAAATAAAAGTG---GGGCGT-TAGAAATTTTGACC-ggctg
Alignments
lowQualScore : 1 1111 444444444444444444444 11111 1 11 1111 11111111 444444444444444444 111 111
lowQualScore : 5 5 1 4 1 5 0 66 1 5 77 5 1 0 5 6 1 0 1 0 5 6 6 2 2222 1 0 1 1 1 1 999999999999999999999 22222 0 8 1 1 5 5 1 55 6 1 33 2222 88 6 666 33333333 44 6 3 99 6 3 888888888888888888 6 111 1 6 77 111 6 6
lowQualScore : . . . . . . . .. . . .. . . . . . . . . . . . . . .... . . . . . . ..................... ..... . . . . . . . .. . . .. .... .. . ... ........ .. . . .. . . .................. . ... . . .. ... . .
lowQualScore : 2 2 0 0 6 7 7 11 3 7 99 7 4 4 7 6 7 6 7 4 7 6 7 5 1111 0 3 3 4 4 7 111111111111111111111 55555 8 5 4 5 7 7 7 77 7 7 00 1111 77 7 888 77777777 00 7 8 22 7 2 666666666666666666 7 777 0 7 77 777 7 7
consensus : ATATACTAATCAAAATTTCTAACGCCCCAGCAAACNTTTCGAATTGCACTGTTT-TTCTATT-CGATTATTTTGACTATAACGTTTGATCAGTATAAAGAATAAAAA-GAAAC--AAAAC-AAA-TGTT-TTCACCGAATCNATTTTTATTCAAGTTGCACGATGTTTTGGCCGTCGA-GGCAGNTCGTCTACACTTCCGGTTCTGTAGAA-TTTCCGGAGAAGTCTTAAGATAGTTTTGTGGTC----TCTGTTGAAATNTCTGGCGACCTGTAATAAATTCAAATTACGTCCGTTGATTTGTAAAGAACGAAATCGAGAATTTGAG-------A---AN----CATGTTTGTAAGCACAAACA-----ACAAATATAGTGAAGGAAAAACAAACCTCTCTTAA-ACTGCGCCCAGCTTGGACCATGCCAACGGCTCTTGCGCGTTC-TTGTGTAGACATGCGCCGCAT-TATACACAACTGTTTTCTTGTTTTTC-GAATACAACTAACT----CTAGAGAACACGTGGATACTAAACC-TTTCAAGA-GAAAAACC-CGGGA-AANATCTCGAAATCGCTCATCATGCTTTT-CAACAATAACGGTCACGGTCGAG--TAACT-ACAAATTCGATTGCAATT--TTTTTTGG-C-TAAACAGTTC-AGCATTGTAAAAGG---CAAACAATATTAAAGTCCATTGATCATAAATTCTNAAATAGTTTT-CAAAC-CTTTGAGAAATAAAAGTG---GGGCGT-TAGAAATTTTGACC-AGTAT
Reference ( family-382 ) : ATATACTAATCAAAATTTCTAACGCCCCAGCAAACNTTTCGAATTGCACTGTTT-TTCTATT-CGATTATTTTGACTATAACGTTTGATCAGTATAAAGAATAAAAA-GAAAC--AAAAC-AAA-TGTT-TTCACCGAATCNATTTTTATTCAAGTTGCACGATGTTTTGGCCGTCGA-GGCAGNTCGTCTACACTTCCGGTTCTGTAGAA-TTTCCGGAGAAGTCTTAAGATAGTTTTGTGGTC----TCTGTTGAAATNTCTGGCGACCTGTAATAAATTCAAATTACGTCCGTTGATTTGTAAAGAACGAAATCGAGAATTTGAG-------A---AA----CATGTTTGTAAGCACAAACA-----ACAAATATAGTGAAGGAAAAACAAACCTCTCTTAA-ACTGCGCCCAGCTTGGACCATGCCAACGGCTCTTGCGCGTTC-TTGTGTAGACATGCGCCGCAT-TATACACAACTGTTTTCTTGTTTTTC-GAATACAACTAACT----CTAGAGAACACGTGGATACTAAACC-TTTCAAGA-GAAAAACC-CGGGA-AAANTCTCGAAATCGCTCATCATGCTTTT-CAACAATAACGGTCACGGTCGAG--TAACT-ACAAATTCGATTGCAATT--TTTTTTGG-C-TAAACAGTTC-AGCATTGTAAAAGG---CAAACAATATTAAAGTCCATTGATCATAAATTCTNAAATAGTTTT-CAAAC-CTTTGAGAAATAAAAGTG---GGGCGT-TAGAAATTTTGACC-AGTAT
gi|1 : ATATACTAATCAAAATTTCTAACGCCCCAGTAAACCTTTCGAATTGCACTGTTT-TTCTATT-TGATAATTTTGACTATAACGTTTGATTAGTATAAAGAATACAAA-GAAAC--AAAAC-AAA-TGTT-TTCACCGAATCTGTTTTTATTTAAATTGCACGATCTTTTATCCGTCGG-GGCAATTCGTGTACACTTCCGGTTCTGTAGGA-TTTCCGGAGAAGTCTTAAGATAGGTTTGTGGTC----TCTCGTGACATTTCTGGCGACCGGTAATAAATTCAAATTACGTCCGTTGATTTGTAAAGTATAAAATTAAAAATTTCAGTCTTAGTA---TA----CATGTTTGTATTCACAAACA-----ACAAATAAAAAGAAGGAAAAACAAACTTCTCTTAA-ACTGCGCCCAGCTTGGACTATGCCATCGGCTCTTGCGCGTTC-TTGTGTAGACTTGCATCGCAT-TATACATAACTGTTTTCTTGTTTTTT-GAATTTATCTAACT----CTAGAGAACACGTGCGTACTAAACT-TTTCAAGA-GGAAAACC-TGGGA-AAATTCTCGAAATTGCTCATCTTTCTTTT-CAACAATAACGGTCACGCTCGAG--TAACT-ACAAATTCGATTGCAATT--TTTTTTGGTC-TAAACAGTTC-AGCATTGTAAAAGG---CAAACAATATTAAAGTCCATTGATCATAAATTCTTAAATAGTTTT-CAAAT-TTTGGAGAAATAAAAGTG---GGACGT-TAGAAATTTTGACC-AGTAT
gi|10 : A-ACTGCGCCCAGTTTGTACCAATCCAACGGCTCTTCCACGTTC-TAGTATAGACAGGTACCGCAA-TTTACACAATTGTTTTCTTTTATGTA-AAATACAACTAACT----TGAAAGAACACTTGAATACTAAACC-TTTCAAGA-GAAAAACA-C-GGA-AACATCTGAAAATCCCTCATTATGCTTTT-CACTAAT
gi|11 : TTGTAAGCACAAATACGGTAATAAATATAGTGAAGGAAAACAAAAACT-TCGTAA-ATTGCTACCAGCTTGGACCCTGCCAACGGTTCTTGTGCGTTCTTTGTGTAGATATGCGCCGTAT-TTTACGCAGCTGGTTTCTTGTTTTTA-GAATACAGCTAACT----GTAGAGAA
gi|12 : --TAACA-ACAAATTCGATTACAATG--TTTTGTC--C-TAAACAGTAC-AGCATTGTAAAAGG---CAAACAATATTAAAGTCCATTGATCATATATTCTGAAATAGATTT-CAAAC-CTTTGACAAATAAAAGTG---GGGAGT-AAGATATTTTGACC-AGTAg
gi|13 : ACATAATAATCAAAATCTTTAACGCCCCAGCAAACACTTTGCATTGCACTGTGT-TTCTGTT-CAATTATTTTCACTATAACGTTTGATCAGTATGAGGAATAAAAA-TAAAC--A-----AAA-TGTT-TTCACCGAATCAGTTTTTATTGAA
gi|14 : ttTGGTA----TCTGTTTAAATTTCTGGCGACCTATAATAAATTCAAA---CGTCTATTAACTTGTATAGAACAAAGTCGAGAATTTGAG-------A---A-----CA-ATTTGTAAGCACAAACA-----ACAAATATAGTAAAGGAAAAA-AAA-CTCT
gi|15 : TTTGG-CCTAAACAGTTC-AGCATTGTAAAAAG---CAAACAATATTAAAGTCAATTGATCATACATTCGGAAATAGTTTT-CAAAC-ATTTGAGAAATAAAAGTG---GGACGT-TAGAAATTTTGACC-ATTAT
gi|16 : CT----CTAGAGAACACATGT-TACTAAACT-TTTCAAAAGGAAAAACC-CGGGA-AAAATCTCGAAATCGCTCa
gi|2 : ATATATTAATCAACATCTGTAACGCCCTATGAAACTTTTTGAATTACATTGCTT-TTATATT-CAATTATTTTGACTATAACGTTGGATCAGTATTCAGAATAAAAA-GAAAT--AAAAC-AAA-AAAAATTCATTAAAGTAATTTTTATTCAAACAGCAAGATGT-----CCATCGAAGGGAG------------TCCGGTTCTGAAGAA-TTTCTGGACAAGTATTAAGATAGTATTGCTGTC----TCTGTTGAAATATCCGACGACCTGTAATGATTATAAATTACGTATG-CAATTTGTAAAAAACAAAATTGACAATTTGAG-------A---AC----TA---TTGTAAGCACAAACA-----ACAACTATTGTGAAAG-AAAACAAACCTGTCCTAA-TATTCACCCTGTGTGGACCATGTTAACGGCTCTTTTGAGTT--TTGTGTCGACATGAGCCGCATATATTC-TAACTGTTTTCTTCTTTTTTAGAACACAACTTACT----CTAG----------------AAATC-ATTCAA-A-GGGAAACA-CGGAA-AACATCTCGAAATCGTTCAACATGTTTTT-CAATGATGAAGCTCGCGGTCGAA--TAACA-GCAAACTCGATTGCATTTTGTTTTTTGG-C-TCAACAGTTC-AGCATTGTAAAAAAAATCAAACAATACTGAAGTTCATTGTTCATAAATTCTTAATTAGTATT-AAAAC-CTTTGAGAAATAAGAATG---GGGTGT-TAGAATTTTTGACC-AGTATgat
gi|3 : tAAACCATTCGAATTGCACTGCTTATTGTATT-TGATTATTTTGATTATAAGGTTTGATCAGTATAAAGAATACAAA-GAAAC--AAACA-AAA-TCTT-TTCACCGAATCTATTTTTATTAAAGTTTCACGATATTTTAGCCGTCAA-ACCCATTCCTCTGGACTTTTGGTTCTGTAGAA-TTTCCGGCGAAGTCATAAGATATATTTGTAG------ACTGTTGAAATCTCTGGCGACCGGTAATAAATTCAAATTACGTCCGTTGATTTGTAAAGAACAAATTTGAGAATT---------------------CATGTTTGTAAGCACAAACA-----ACAAATAAAGCGAAGG-AAAACAAACTTCTCGTAT-ACTGCGACCAGCTTGGACCATGCCAATGACTCTTGTGCGTTC-TTGTGTAGACATGCACCGCAT-TATACACAACTGTTTTCTTGCTTTTT-TAATATAACTAACG----TTAGAGAACATGTGGGTACTa
gi|4 : TGCATGTTATTTTGGCCGTCGA-GGCAGGTTGTCTACACTTCCGTTTTTGTTGAA-TTTCCGAACAAGTCTTAAGATGGTTTTGTGATCGCTGTCTGTTTAAATATCAGGCTACCTCTAATAAATTCAAATTACTTCCGTTAATTCGTATAGAACAAAATCAAGGTTTTGAG-------A---AC----CAT--TAGTATATACAAACA-----ACAAATATAGTGCA---AAAACAAACCTCT-TTAACACTGCGCCCAGGTCGGACCATGCCAATGGCTCTTGCGCGTTC-TTGTG----CATG-------T-TACGCAC--CTGTTTTCTTGTTTTTC-GAATACAACTAATTAAATCTAAAGAACACGTGGATAGAAGAAT-ATTCAATC-TAAAAA---------AAATCCTGGAAA--------------------ACA-TAAAGGTTACAGTTGAG--TAATT-ACAAATTCGATg
gi|5 : ttctgttgacgtgtcgaACTAATAAAGATTT-TATCGCCCCAGCAAACATTT-----TACA----------TATCACAGTTACTTTGACTATAACGTTTGATCAGTATAAA-AATAAAAAAGAAAC--AAAAC-AAACTGTT-TTCACTGAATCAAATTTTATTCAAGTTGCACGGTGTTTTGGCCTTTGA-GGCTGATCGACTATACTTCCGTTTCTGTGGAAATTT--------------AGGTAGTTTTGTGGTC----TCTGTTGAAATTTCTGGAGTCCTGTAACGAATTCAAATTACTTCCATGAATTTGTAAAGAATGAAACTGAGAATTAGAG-------A---AA----AA--CTTGTAAACACAAACA-----GCAAATATAGTGAAGG-AAAACAAACCTCTCTTAA-ACTACACCCAGCTTCGACCATGCCAACATCTCTTGCGCGTTC-TTGTGAAGACACGTGC
gi|6 : ATA-TAATCAAAATTTCTAATGCCCCAGTAAACCTTTCGAATTGCACTGTTT-TTCTATT-TGATTATTTTGACTATAACGTTTGATCAGTATAAAGAATACAAA-GAAAC--AAAAC-AAAATATT-TTCACCGAATCTATTAATATTCAAGTTGCACGATCTTTTAGCCGTCCA-GGCAATTCGTCTACACTTCCGGTTCTGTAAAA-TTACCGGAGAAGTCTTGAGATGGTTTTGTGGTT----TCTGTTGAAATCTCGGGCGACCGGTAATAAATTCAACTTACGTCCGTTGATTTATAAATAACGAAATTGAGAATTTGAG-------ACTTAGTATCCATGTTTGTAAGTACAAACA-----ACAAATAAAGCGAAGG-AAAATAAACTTCTC
gi|7 : taGCGGATACTAAACCATTTCAAGA-GAAAAACCGCTTTATAACATCTCGAAATCGCTACTCACGCCTTT-CAACAAT-ACGGTTACGGTTGTGTATAACTAACAAATTTTATT-------------------------------GCATTGTACAGGC---TAACCAATATTAAG--CCATTGATAATAAATT-TGAAATAGTTTTAAAAACACTTTGAGAAATGAAAGTGGCCGGGTATATAGAAATTTC--CCAAGTAT
gi|8 : ttctgaagttaaaattccatccctagTATACTAATCAAAATTTCTAATGCCGCAGCAATCATTTTGTATTGCACAGTTT-TTCTATA-GAATTATTTTGACTATGACGTTTGACTAGTATAAAGAATAAAAA-GAAACCAAAAACAAAA-TATT-TTCG-CGAATC-ATTTTTATTTAACCTGCACGTCGTTTTGGCCATCAA-GGCAGGTCGTCCACATTTa
gi|9 : ATCATGCTTTTTCAACAATAACGGTCACGCTCGAA--TAACT-ACAAATTCGATTGCAA------------------ACAGTTTTAGCATTGTAAAATG---CAAACAATAT---AGTCCTTTGTTCATAAATTCTTAAATAGTCTT-CAAAC-ATTTGAGAAATAAAAGTG---GGGCGT-TAGAAATTTTGACC-ggctg
Alignments
lowQualScore : 1 1111 4444444444444444444444 11111 1 11 1111 11111111 444444444444444444 111 111
lowQualScore : 5 5 1 4 1 5 0 66 1 5 77 5 1 0 5 6 1 0 1 0 5 6 6 2 2222 1 0 1 1 1 1 6666666666666666666666 22222 0 8 1 1 5 5 1 55 6 1 33 2222 88 6 666 33333333 1 6 3 99 6 3 888888888888888888 6 111 1 6 77 111 6 6
lowQualScore : . . . . . . . .. . . .. . . . . . . . . . . . . . .... . . . . . . ...................... ..... . . . . . . . .. . . .. .... .. . ... ........ . . . .. . . .................. . ... . . .. ... . .
lowQualScore : 2 2 0 0 6 7 7 11 3 7 99 7 4 4 7 6 7 6 7 4 7 6 7 5 1111 0 3 3 4 4 7 6666666666666666666666 55555 8 5 4 5 7 7 7 77 7 7 00 1111 77 7 888 77777777 0 7 8 22 7 2 666666666666666666 7 777 0 7 77 777 7 7
consensus : ATATACTAATCAAAATTTCTAACGCCCCAGCAAACNTTTCGAATTGCACTGTTT-TTCTATT-CGATTATTTTGACTATAACGTTTGATCAGTATAAAGAATAAAAA-GAAAC--AAAAC-AAA-TGTT-TTCACCGAATCNATTTTTATTCAAGTTGCACGATGTTTTGGCCGTCGA-GGCAGNTCGTCTACACTTCCGGTTCTGTAGAA-TTTCCGGAGAAGTCTTAAGATAGTTTTGTGGTC----TCTGTTGAAATNTCTGGCGACCTGTAATAAATTCAAATTACGTCCGTTGATTTGTAAAGAACGAAATCGAGAATTTGAG-------A---A----CCATGTTTGTAAGCACAAACA-----ACAAATATAGTGAAGGAAAAACAAACCTCTCTTAA-ACTGCGCCCAGCTTGGACCATGCCAACGGCTCTTGCGCGTTC-TTGTGTAGACATGCGCCGCAT-TATACACAACTGTTTTCTTGTTTTTC-GAATACAACTAACT----CTAGAGAACACGTGGATACTAAACC-TTTCAAGA-GAAAAACC-CGGGA-AANATCTCGAAATCGCTCATCATGCTTTT-CAACAATAACGGTCACGGTCGAG--TAACT-ACAAATTCGATTGCAATT--TTTTTTGG-C-TAAACAGTTC-AGCATTGTAAAAGG---CAAACAATATTAAAGTCCATTGATCATAAATTCTNAAATAGTTTT-CAAAC-CTTTGAGAAATAAAAGTG---GGGCGT-TAGAAATTTTGACC-AGTAT
Reference ( family-382 ) : ATATACTAATCAAAATTTCTAACGCCCCAGCAAACNTTTCGAATTGCACTGTTT-TTCTATT-CGATTATTTTGACTATAACGTTTGATCAGTATAAAGAATAAAAA-GAAAC--AAAAC-AAA-TGTT-TTCACCGAATCNATTTTTATTCAAGTTGCACGATGTTTTGGCCGTCGA-GGCAGNTCGTCTACACTTCCGGTTCTGTAGAA-TTTCCGGAGAAGTCTTAAGATAGTTTTGTGGTC----TCTGTTGAAATNTCTGGCGACCTGTAATAAATTCAAATTACGTCCGTTGATTTGTAAAGAACGAAATCGAGAATTTGAG-------A---A----NCATGTTTGTAAGCACAAACA-----ACAAATATAGTGAAGGAAAAACAAACCTCTCTTAA-ACTGCGCCCAGCTTGGACCATGCCAACGGCTCTTGCGCGTTC-TTGTGTAGACATGCGCCGCAT-TATACACAACTGTTTTCTTGTTTTTC-GAATACAACTAACT----CTAGAGAACACGTGGATACTAAACC-TTTCAAGA-GAAAAACC-CGGGA-AANATCTCGAAATCGCTCATCATGCTTTT-CAACAATAACGGTCACGGTCGAG--TAACT-ACAAATTCGATTGCAATT--TTTTTTGG-C-TAAACAGTTC-AGCATTGTAAAAGG---CAAACAATATTAAAGTCCATTGATCATAAATTCTNAAATAGTTTT-CAAAC-CTTTGAGAAATAAAAGTG---GGGCGT-TAGAAATTTTGACC-AGTAT
gi|1 : ATATACTAATCAAAATTTCTAACGCCCCAGTAAACCTTTCGAATTGCACTGTTT-TTCTATT-TGATAATTTTGACTATAACGTTTGATTAGTATAAAGAATACAAA-GAAAC--AAAAC-AAA-TGTT-TTCACCGAATCTGTTTTTATTTAAATTGCACGATCTTTTATCCGTCGG-GGCAATTCGTGTACACTTCCGGTTCTGTAGGA-TTTCCGGAGAAGTCTTAAGATAGGTTTGTGGTC----TCTCGTGACATTTCTGGCGACCGGTAATAAATTCAAATTACGTCCGTTGATTTGTAAAGTATAAAATTAAAAATTTCAGTCTTAGTA---T----ACATGTTTGTATTCACAAACA-----ACAAATAAAAAGAAGGAAAAACAAACTTCTCTTAA-ACTGCGCCCAGCTTGGACTATGCCATCGGCTCTTGCGCGTTC-TTGTGTAGACTTGCATCGCAT-TATACATAACTGTTTTCTTGTTTTTT-GAATTTATCTAACT----CTAGAGAACACGTGCGTACTAAACT-TTTCAAGA-GGAAAACC-TGGGA-AAATTCTCGAAATTGCTCATCTTTCTTTT-CAACAATAACGGTCACGCTCGAG--TAACT-ACAAATTCGATTGCAATT--TTTTTTGGTC-TAAACAGTTC-AGCATTGTAAAAGG---CAAACAATATTAAAGTCCATTGATCATAAATTCTTAAATAGTTTT-CAAAT-TTTGGAGAAATAAAAGTG---GGACGT-TAGAAATTTTGACC-AGTAT
gi|10 : A-ACTGCGCCCAGTTTGTACCAATCCAACGGCTCTTCCACGTTC-TAGTATAGACAGGTACCGCAA-TTTACACAATTGTTTTCTTTTATGTA-AAATACAACTAACT----TGAAAGAACACTTGAATACTAAACC-TTTCAAGA-GAAAAACA-C-GGA-AACATCTGAAAATCCCTCATTATGCTTTT-CACTAAT
gi|11 : TTGTAAGCACAAATACGGTAATAAATATAGTGAAGGAAAACAAAAACT-TCGTAA-ATTGCTACCAGCTTGGACCCTGCCAACGGTTCTTGTGCGTTCTTTGTGTAGATATGCGCCGTAT-TTTACGCAGCTGGTTTCTTGTTTTTA-GAATACAGCTAACT----GTAGAGAA
gi|12 : --TAACA-ACAAATTCGATTACAATG--TTTTGTC--C-TAAACAGTAC-AGCATTGTAAAAGG---CAAACAATATTAAAGTCCATTGATCATATATTCTGAAATAGATTT-CAAAC-CTTTGACAAATAAAAGTG---GGGAGT-AAGATATTTTGACC-AGTAg
gi|13 : ACATAATAATCAAAATCTTTAACGCCCCAGCAAACACTTTGCATTGCACTGTGT-TTCTGTT-CAATTATTTTCACTATAACGTTTGATCAGTATGAGGAATAAAAA-TAAAC--A-----AAA-TGTT-TTCACCGAATCAGTTTTTATTGAA
gi|14 : ttTGGTA----TCTGTTTAAATTTCTGGCGACCTATAATAAATTCAAA---CGTCTATTAACTTGTATAGAACAAAGTCGAGAATTTGAG-------A---A----CAAT--TTGTAAGCACAAACA-----ACAAATATAGTAAAGGAAAAA-AAA-CTCT
gi|15 : TTTGG-CCTAAACAGTTC-AGCATTGTAAAAAG---CAAACAATATTAAAGTCAATTGATCATACATTCGGAAATAGTTTT-CAAAC-ATTTGAGAAATAAAAGTG---GGACGT-TAGAAATTTTGACC-ATTAT
gi|16 : CT----CTAGAGAACACATGT-TACTAAACT-TTTCAAAAGGAAAAACC-CGGGA-AAAATCTCGAAATCGCTCa
gi|2 : ATATATTAATCAACATCTGTAACGCCCTATGAAACTTTTTGAATTACATTGCTT-TTATATT-CAATTATTTTGACTATAACGTTGGATCAGTATTCAGAATAAAAA-GAAAT--AAAAC-AAA-AAAAATTCATTAAAGTAATTTTTATTCAAACAGCAAGATGT-----CCATCGAAGGGAG------------TCCGGTTCTGAAGAA-TTTCTGGACAAGTATTAAGATAGTATTGCTGTC----TCTGTTGAAATATCCGACGACCTGTAATGATTATAAATTACGTATG-CAATTTGTAAAAAACAAAATTGACAATTTGAG-------A---A----CTA---TTGTAAGCACAAACA-----ACAACTATTGTGAAAG-AAAACAAACCTGTCCTAA-TATTCACCCTGTGTGGACCATGTTAACGGCTCTTTTGAGTT--TTGTGTCGACATGAGCCGCATATATTC-TAACTGTTTTCTTCTTTTTTAGAACACAACTTACT----CTAG----------------AAATC-ATTCAA-A-GGGAAACA-CGGAA-AACATCTCGAAATCGTTCAACATGTTTTT-CAATGATGAAGCTCGCGGTCGAA--TAACA-GCAAACTCGATTGCATTTTGTTTTTTGG-C-TCAACAGTTC-AGCATTGTAAAAAAAATCAAACAATACTGAAGTTCATTGTTCATAAATTCTTAATTAGTATT-AAAAC-CTTTGAGAAATAAGAATG---GGGTGT-TAGAATTTTTGACC-AGTATgat
gi|3 : tAAACCATTCGAATTGCACTGCTTATTGTATT-TGATTATTTTGATTATAAGGTTTGATCAGTATAAAGAATACAAA-GAAAC--AAACA-AAA-TCTT-TTCACCGAATCTATTTTTATTAAAGTTTCACGATATTTTAGCCGTCAA-ACCCATTCCTCTGGACTTTTGGTTCTGTAGAA-TTTCCGGCGAAGTCATAAGATATATTTGTAG------ACTGTTGAAATCTCTGGCGACCGGTAATAAATTCAAATTACGTCCGTTGATTTGTAAAGAACAAATTTGAGAATT---------------------CATGTTTGTAAGCACAAACA-----ACAAATAAAGCGAAGG-AAAACAAACTTCTCGTAT-ACTGCGACCAGCTTGGACCATGCCAATGACTCTTGTGCGTTC-TTGTGTAGACATGCACCGCAT-TATACACAACTGTTTTCTTGCTTTTT-TAATATAACTAACG----TTAGAGAACATGTGGGTACTa
gi|4 : TGCATGTTATTTTGGCCGTCGA-GGCAGGTTGTCTACACTTCCGTTTTTGTTGAA-TTTCCGAACAAGTCTTAAGATGGTTTTGTGATCGCTGTCTGTTTAAATATCAGGCTACCTCTAATAAATTCAAATTACTTCCGTTAATTCGTATAGAACAAAATCAAGGTTTTGAG-------A---A----CCAT--TAGTATATACAAACA-----ACAAATATAGTGCA---AAAACAAACCTCT-TTAACACTGCGCCCAGGTCGGACCATGCCAATGGCTCTTGCGCGTTC-TTGTG----CATG-------T-TACGCAC--CTGTTTTCTTGTTTTTC-GAATACAACTAATTAAATCTAAAGAACACGTGGATAGAAGAAT-ATTCAATC-TAAAAA----------AAATCCTGGAA-------------------AACA-TAAAGGTTACAGTTGAG--TAATT-ACAAATTCGATg
gi|5 : ttctgttgacgtgtcgaACTAATAAAGATTT-TATCGCCCCAGCAAACATTT-----TACA----------TATCACAGTTACTTTGACTATAACGTTTGATCAGTATAAA-AATAAAAAAGAAAC--AAAAC-AAACTGTT-TTCACTGAATCAAATTTTATTCAAGTTGCACGGTGTTTTGGCCTTTGA-GGCTGATCGACTATACTTCCGTTTCTGTGGAAATTT--------------AGGTAGTTTTGTGGTC----TCTGTTGAAATTTCTGGAGTCCTGTAACGAATTCAAATTACTTCCATGAATTTGTAAAGAATGAAACTGAGAATTAGAG-------A---A----AAA--CTTGTAAACACAAACA-----GCAAATATAGTGAAGG-AAAACAAACCTCTCTTAA-ACTACACCCAGCTTCGACCATGCCAACATCTCTTGCGCGTTC-TTGTGAAGACACGTGC
gi|6 : ATA-TAATCAAAATTTCTAATGCCCCAGTAAACCTTTCGAATTGCACTGTTT-TTCTATT-TGATTATTTTGACTATAACGTTTGATCAGTATAAAGAATACAAA-GAAAC--AAAAC-AAAATATT-TTCACCGAATCTATTAATATTCAAGTTGCACGATCTTTTAGCCGTCCA-GGCAATTCGTCTACACTTCCGGTTCTGTAAAA-TTACCGGAGAAGTCTTGAGATGGTTTTGTGGTT----TCTGTTGAAATCTCGGGCGACCGGTAATAAATTCAACTTACGTCCGTTGATTTATAAATAACGAAATTGAGAATTTGAG-------ACTTAGTATCCATGTTTGTAAGTACAAACA-----ACAAATAAAGCGAAGG-AAAATAAACTTCTC
gi|7 : taGCGGATACTAAACCATTTCAAGA-GAAAAACCGCTTTATAACATCTCGAAATCGCTACTCACGCCTTT-CAACAAT-ACGGTTACGGTTGTGTATAACTAACAAATTTTATT-------------------------------GCATTGTACAGGC---TAACCAATATTAAG--CCATTGATAATAAATT-TGAAATAGTTTTAAAAACACTTTGAGAAATGAAAGTGGCCGGGTATATAGAAATTTC--CCAAGTAT
gi|8 : ttctgaagttaaaattccatccctagTATACTAATCAAAATTTCTAATGCCGCAGCAATCATTTTGTATTGCACAGTTT-TTCTATA-GAATTATTTTGACTATGACGTTTGACTAGTATAAAGAATAAAAA-GAAACCAAAAACAAAA-TATT-TTCG-CGAATC-ATTTTTATTTAACCTGCACGTCGTTTTGGCCATCAA-GGCAGGTCGTCCACATTTa
gi|9 : ATCATGCTTTTTCAACAATAACGGTCACGCTCGAA--TAACT-ACAAATTCGATTGCAA------------------ACAGTTTTAGCATTGTAAAATG---CAAACAATAT---AGTCCTTTGTTCATAAATTCTTAAATAGTCTT-CAAAC-ATTTGAGAAATAAAAGTG---GGGCGT-TAGAAATTTTGACC-ggctg
Alignments
lowQualScore : 1 1111 4444444444444444444444 11111 1 11 1111 11111111 444444444444444444 111 111
lowQualScore : 5 5 1 4 1 5 0 66 1 5 77 5 1 0 5 6 1 0 1 0 5 6 6 2 2222 1 0 1 1 1 1 3333333333333333333333 22222 0 8 1 1 5 5 1 55 6 1 33 2222 88 6 666 33333333 1 6 3 99 6 3 888888888888888888 6 111 1 6 77 111 6 6
lowQualScore : . . . . . . . .. . . .. . . . . . . . . . . . . . .... . . . . . . ...................... ..... . . . . . . . .. . . .. .... .. . ... ........ . . . .. . . .................. . ... . . .. ... . .
lowQualScore : 2 2 0 0 6 7 7 11 3 7 99 7 4 4 7 6 7 6 7 4 7 6 7 5 1111 0 3 3 4 4 7 3333333333333333333333 55555 8 5 4 5 7 7 7 77 7 7 00 1111 77 7 888 77777777 0 7 8 22 7 2 666666666666666666 7 777 0 7 77 777 7 7
consensus : ATATACTAATCAAAATTTCTAACGCCCCAGCAAACNTTTCGAATTGCACTGTTT-TTCTATT-CGATTATTTTGACTATAACGTTTGATCAGTATAAAGAATAAAAA-GAAAC--AAAAC-AAA-TGTT-TTCACCGAATCNATTTTTATTCAAGTTGCACGATGTTTTGGCCGTCGA-GGCAGNTCGTCTACACTTCCGGTTCTGTAGAA-TTTCCGGAGAAGTCTTAAGATAGTTTTGTGGTC----TCTGTTGAAATNTCTGGCGACCTGTAATAAATTCAAATTACGTCCGTTGATTTGTAAAGAACGAAATCGAGAATTTGAG-------A---A----CCATGTTTGTAAGCACAAACA-----ACAAATATAGTGAAGGAAAAACAAACCTCTCTTAA-ACTGCGCCCAGCTTGGACCATGCCAACGGCTCTTGCGCGTTC-TTGTGTAGACATGCGCCGCAT-TATACACAACTGTTTTCTTGTTTTTC-GAATACAACTAACT----CTAGAGAACACGTGGATACTAAACC-TTTCAAGA-GAAAAACC-CGGGA-AANATCTCGAAATCGCTCATCATGCTTTT-CAACAATAACGGTCACGGTCGAG--TAACT-ACAAATTCGATTGCAATT--TTTTTTGG-C-TAAACAGTTC-AGCATTGTAAAAGG---CAAACAATATTAAAGTCCATTGATCATAAATTCTNAAATAGTTTT-CAAAC-CTTTGAGAAATAAAAGTG---GGGCGT-TAGAAATTTTGACC-AGTAT
Reference ( family-382 ) : ATATACTAATCAAAATTTCTAACGCCCCAGCAAACNTTTCGAATTGCACTGTTT-TTCTATT-CGATTATTTTGACTATAACGTTTGATCAGTATAAAGAATAAAAA-GAAAC--AAAAC-AAA-TGTT-TTCACCGAATCNATTTTTATTCAAGTTGCACGATGTTTTGGCCGTCGA-GGCAGNTCGTCTACACTTCCGGTTCTGTAGAA-TTTCCGGAGAAGTCTTAAGATAGTTTTGTGGTC----TCTGTTGAAATNTCTGGCGACCTGTAATAAATTCAAATTACGTCCGTTGATTTGTAAAGAACGAAATCGAGAATTTGAG-------A---A----CCATGTTTGTAAGCACAAACA-----ACAAATATAGTGAAGGAAAAACAAACCTCTCTTAA-ACTGCGCCCAGCTTGGACCATGCCAACGGCTCTTGCGCGTTC-TTGTGTAGACATGCGCCGCAT-TATACACAACTGTTTTCTTGTTTTTC-GAATACAACTAACT----CTAGAGAACACGTGGATACTAAACC-TTTCAAGA-GAAAAACC-CGGGA-AANATCTCGAAATCGCTCATCATGCTTTT-CAACAATAACGGTCACGGTCGAG--TAACT-ACAAATTCGATTGCAATT--TTTTTTGG-C-TAAACAGTTC-AGCATTGTAAAAGG---CAAACAATATTAAAGTCCATTGATCATAAATTCTNAAATAGTTTT-CAAAC-CTTTGAGAAATAAAAGTG---GGGCGT-TAGAAATTTTGACC-AGTAT
gi|1 : ATATACTAATCAAAATTTCTAACGCCCCAGTAAACCTTTCGAATTGCACTGTTT-TTCTATT-TGATAATTTTGACTATAACGTTTGATTAGTATAAAGAATACAAA-GAAAC--AAAAC-AAA-TGTT-TTCACCGAATCTGTTTTTATTTAAATTGCACGATCTTTTATCCGTCGG-GGCAATTCGTGTACACTTCCGGTTCTGTAGGA-TTTCCGGAGAAGTCTTAAGATAGGTTTGTGGTC----TCTCGTGACATTTCTGGCGACCGGTAATAAATTCAAATTACGTCCGTTGATTTGTAAAGTATAAAATTAAAAATTTCAGTCTTAGTA---T----ACATGTTTGTATTCACAAACA-----ACAAATAAAAAGAAGGAAAAACAAACTTCTCTTAA-ACTGCGCCCAGCTTGGACTATGCCATCGGCTCTTGCGCGTTC-TTGTGTAGACTTGCATCGCAT-TATACATAACTGTTTTCTTGTTTTTT-GAATTTATCTAACT----CTAGAGAACACGTGCGTACTAAACT-TTTCAAGA-GGAAAACC-TGGGA-AAATTCTCGAAATTGCTCATCTTTCTTTT-CAACAATAACGGTCACGCTCGAG--TAACT-ACAAATTCGATTGCAATT--TTTTTTGGTC-TAAACAGTTC-AGCATTGTAAAAGG---CAAACAATATTAAAGTCCATTGATCATAAATTCTTAAATAGTTTT-CAAAT-TTTGGAGAAATAAAAGTG---GGACGT-TAGAAATTTTGACC-AGTAT
gi|10 : A-ACTGCGCCCAGTTTGTACCAATCCAACGGCTCTTCCACGTTC-TAGTATAGACAGGTACCGCAA-TTTACACAATTGTTTTCTTTTATGTA-AAATACAACTAACT----TGAAAGAACACTTGAATACTAAACC-TTTCAAGA-GAAAAACA-C-GGA-AACATCTGAAAATCCCTCATTATGCTTTT-CACTAAT
gi|11 : TTGTAAGCACAAATACGGTAATAAATATAGTGAAGGAAAACAAAAACT-TCGTAA-ATTGCTACCAGCTTGGACCCTGCCAACGGTTCTTGTGCGTTCTTTGTGTAGATATGCGCCGTAT-TTTACGCAGCTGGTTTCTTGTTTTTA-GAATACAGCTAACT----GTAGAGAA
gi|12 : --TAACA-ACAAATTCGATTACAATG--TTTTGTC--C-TAAACAGTAC-AGCATTGTAAAAGG---CAAACAATATTAAAGTCCATTGATCATATATTCTGAAATAGATTT-CAAAC-CTTTGACAAATAAAAGTG---GGGAGT-AAGATATTTTGACC-AGTAg
gi|13 : ACATAATAATCAAAATCTTTAACGCCCCAGCAAACACTTTGCATTGCACTGTGT-TTCTGTT-CAATTATTTTCACTATAACGTTTGATCAGTATGAGGAATAAAAA-TAAAC--A-----AAA-TGTT-TTCACCGAATCAGTTTTTATTGAA
gi|14 : ttTGGTA----TCTGTTTAAATTTCTGGCGACCTATAATAAATTCAAA---CGTCTATTAACTTGTATAGAACAAAGTCGAGAATTTGAG-------A---A----CAAT--TTGTAAGCACAAACA-----ACAAATATAGTAAAGGAAAAA-AAA-CTCT
gi|15 : TTTGG-CCTAAACAGTTC-AGCATTGTAAAAAG---CAAACAATATTAAAGTCAATTGATCATACATTCGGAAATAGTTTT-CAAAC-ATTTGAGAAATAAAAGTG---GGACGT-TAGAAATTTTGACC-ATTAT
gi|16 : CT----CTAGAGAACACATGT-TACTAAACT-TTTCAAAAGGAAAAACC-CGGGA-AAAATCTCGAAATCGCTCa
gi|2 : ATATATTAATCAACATCTGTAACGCCCTATGAAACTTTTTGAATTACATTGCTT-TTATATT-CAATTATTTTGACTATAACGTTGGATCAGTATTCAGAATAAAAA-GAAAT--AAAAC-AAA-AAAAATTCATTAAAGTAATTTTTATTCAAACAGCAAGATGT-----CCATCGAAGGGAG------------TCCGGTTCTGAAGAA-TTTCTGGACAAGTATTAAGATAGTATTGCTGTC----TCTGTTGAAATATCCGACGACCTGTAATGATTATAAATTACGTATG-CAATTTGTAAAAAACAAAATTGACAATTTGAG-------A---A----CTA---TTGTAAGCACAAACA-----ACAACTATTGTGAAAG-AAAACAAACCTGTCCTAA-TATTCACCCTGTGTGGACCATGTTAACGGCTCTTTTGAGTT--TTGTGTCGACATGAGCCGCATATATTC-TAACTGTTTTCTTCTTTTTTAGAACACAACTTACT----CTAG----------------AAATC-ATTCAA-A-GGGAAACA-CGGAA-AACATCTCGAAATCGTTCAACATGTTTTT-CAATGATGAAGCTCGCGGTCGAA--TAACA-GCAAACTCGATTGCATTTTGTTTTTTGG-C-TCAACAGTTC-AGCATTGTAAAAAAAATCAAACAATACTGAAGTTCATTGTTCATAAATTCTTAATTAGTATT-AAAAC-CTTTGAGAAATAAGAATG---GGGTGT-TAGAATTTTTGACC-AGTATgat
gi|3 : tAAACCATTCGAATTGCACTGCTTATTGTATT-TGATTATTTTGATTATAAGGTTTGATCAGTATAAAGAATACAAA-GAAAC--AAACA-AAA-TCTT-TTCACCGAATCTATTTTTATTAAAGTTTCACGATATTTTAGCCGTCAA-ACCCATTCCTCTGGACTTTTGGTTCTGTAGAA-TTTCCGGCGAAGTCATAAGATATATTTGTAG------ACTGTTGAAATCTCTGGCGACCGGTAATAAATTCAAATTACGTCCGTTGATTTGTAAAGAACAAATTTGAGAATT---------------------CATGTTTGTAAGCACAAACA-----ACAAATAAAGCGAAGG-AAAACAAACTTCTCGTAT-ACTGCGACCAGCTTGGACCATGCCAATGACTCTTGTGCGTTC-TTGTGTAGACATGCACCGCAT-TATACACAACTGTTTTCTTGCTTTTT-TAATATAACTAACG----TTAGAGAACATGTGGGTACTa
gi|4 : TGCATGTTATTTTGGCCGTCGA-GGCAGGTTGTCTACACTTCCGTTTTTGTTGAA-TTTCCGAACAAGTCTTAAGATGGTTTTGTGATCGCTGTCTGTTTAAATATCAGGCTACCTCTAATAAATTCAAATTACTTCCGTTAATTCGTATAGAACAAAATCAAGGTTTTGAG-------A---A----CCAT--TAGTATATACAAACA-----ACAAATATAGTGCA---AAAACAAACCTCT-TTAACACTGCGCCCAGGTCGGACCATGCCAATGGCTCTTGCGCGTTC-TTGTG----CATG-------T-TACGCAC--CTGTTTTCTTGTTTTTC-GAATACAACTAATTAAATCTAAAGAACACGTGGATAGAAGAAT-ATTCAATC-TAAAAA----------AAATCCTGGAA-------------------AACA-TAAAGGTTACAGTTGAG--TAATT-ACAAATTCGATg
gi|5 : ttctgttgacgtgtcgaACTAATAAAGATTT-TATCGCCCCAGCAAACATTT-----TACA----------TATCACAGTTACTTTGACTATAACGTTTGATCAGTATAAA-AATAAAAAAGAAAC--AAAAC-AAACTGTT-TTCACTGAATCAAATTTTATTCAAGTTGCACGGTGTTTTGGCCTTTGA-GGCTGATCGACTATACTTCCGTTTCTGTGGAAATTT--------------AGGTAGTTTTGTGGTC----TCTGTTGAAATTTCTGGAGTCCTGTAACGAATTCAAATTACTTCCATGAATTTGTAAAGAATGAAACTGAGAATTAGAG-------A---A------AAACTTGTAAACACAAACA-----GCAAATATAGTGAAGG-AAAACAAACCTCTCTTAA-ACTACACCCAGCTTCGACCATGCCAACATCTCTTGCGCGTTC-TTGTGAAGACACGTGC
gi|6 : ATA-TAATCAAAATTTCTAATGCCCCAGTAAACCTTTCGAATTGCACTGTTT-TTCTATT-TGATTATTTTGACTATAACGTTTGATCAGTATAAAGAATACAAA-GAAAC--AAAAC-AAAATATT-TTCACCGAATCTATTAATATTCAAGTTGCACGATCTTTTAGCCGTCCA-GGCAATTCGTCTACACTTCCGGTTCTGTAAAA-TTACCGGAGAAGTCTTGAGATGGTTTTGTGGTT----TCTGTTGAAATCTCGGGCGACCGGTAATAAATTCAACTTACGTCCGTTGATTTATAAATAACGAAATTGAGAATTTGAG-------ACTTAGTATCCATGTTTGTAAGTACAAACA-----ACAAATAAAGCGAAGG-AAAATAAACTTCTC
gi|7 : taGCGGATACTAAACCATTTCAAGA-GAAAAACCGCTTTATAACATCTCGAAATCGCTACTCACGCCTTT-CAACAAT-ACGGTTACGGTTGTGTATAACTAACAAATTTTATT-------------------------------GCATTGTACAGGC---TAACCAATATTAAG--CCATTGATAATAAATT-TGAAATAGTTTTAAAAACACTTTGAGAAATGAAAGTGGCCGGGTATATAGAAATTTC--CCAAGTAT
gi|8 : ttctgaagttaaaattccatccctagTATACTAATCAAAATTTCTAATGCCGCAGCAATCATTTTGTATTGCACAGTTT-TTCTATA-GAATTATTTTGACTATGACGTTTGACTAGTATAAAGAATAAAAA-GAAACCAAAAACAAAA-TATT-TTCG-CGAATC-ATTTTTATTTAACCTGCACGTCGTTTTGGCCATCAA-GGCAGGTCGTCCACATTTa
gi|9 : ATCATGCTTTTTCAACAATAACGGTCACGCTCGAA--TAACT-ACAAATTCGATTGCAA------------------ACAGTTTTAGCATTGTAAAATG---CAAACAATAT---AGTCCTTTGTTCATAAATTCTTAAATAGTCTT-CAAAC-ATTTGAGAAATAAAAGTG---GGGCGT-TAGAAATTTTGACC-ggctg
blockSeqs : A T A T C A AC A A CA A C A A G G A T A C GCTG T T A C T ACTTAGTATCCATGT CGGTA A A G C T T TA A A TA AAAT AA A AAG CGCTTTAT C T G TA A A TTTTGTTTTTTGGCTC T AAT G A AC GCC A A
blockSeqs : T G T T A . C A . . . A . A C A . G . G . A T A T T AACAAT . A C C . . T CG . G A . GG . GA CCGGGA A . A . . G ATGTTTTGTCCTA . . G . C . . .
blockSeqs : C C C C A . C C . . . . . T A A . A . C . C G A T T AACCAT . . C G . . T AG . A A . GA . TC ACGGAA C . A . . G A . . T . A . . .
blockSeqs : C C A C A . T A . . . . . A C G . T . G . A T A C A AAAAAC . . C T . . T CA . A T . GA . GA ACGGA A . . . . . . . . G . C . . .
blockSeqs : . . C T T . T C . . . . . T C C . G . . . T T G T T AACTA . . C T . . A TG . . C . T . A . C . . . . . T . A . . .
blockSeqs : A . . . G A . . . . . . T G . . . C G G T . CATGT . . T . . . . . .
blockSeqs : . . .
blockSeqCons : AACATAT*************** ******************
originalCons : ATATACTAATCAAAATTTCTAACGCCCCAGCAAACNTTTCGAATTGCACTGTTT-TTCTATT-CGATTATTTTGACTATAACGTTTGATCAGTATAAAGAATAAAAA-GAAAC--AAAAC-AAA-TGTT-TTCACCGAATCNATTTTTATTCAAGTTGCACGATGTTTTGGCCGTCGA-GGCAGNTCGTCTACACTTCCGGTTCTGTAGAA-TTTCCGGAGAAGTCTTAAGATAGTTTTGTGGTC----TCTGTTGAAATNTCTGGCGACCTGTAATAAATTCAAATTACGTCCGTTGATTTGTAAAGAACGAAATCGAGAATTTGAG-------A---A----CCATGTTTGTAAGCACAAACA-----ACAAATATAGTGAAGGAAAAACAAACCTCTCTTAA-ACTGCGCCCAGCTTGGACCATGCCAACGGCTCTTGCGCGTTC-TTGTGTAGACATGCGCCGCAT-TATACACAACTGTTTTCTTGTTTTTC-GAATACAACTAACT----CTAGAGAACACGTGGATACTAAACC-TTTCAAGA-GAAAAACC-CGGGA-AANATCTCGAAATCGCTCATCATGCTTTT-CAACAATAACGGTCACGGTCGAG--TAACT-ACAAATTCGATTGCAATT--TTTTTTGG-C-TAAACAGTTC-AGCATTGTAAAAGG---CAAACAATATTAAAGTCCATTGATCATAAATTCTNAAATAGTTTT-CAAAC-CTTTGAGAAATAAAAGTG---GGGCGT-TAGAAATTTTGACC-AGTAT
finalCons : ATATACTAATCAAAATTTCTAACGCCCCAGCAAACNTTTCGAATTGCACTGTTT-TTCTATT-CGATTATTTTGACTATAACGTTTGATCAGTATAAAGAATAAAAA-GAAAC--AAAAC-AAA-TGTT-TTCACCGAATCNATTTTTATTCAAGTTGCACGATGTTTTGGCCGTCGA-GGCAGNTCGTCTACACTTCCGGTTCTGTAGAA-TTTCCGGAGAAGTCTTAAGATAGTTTTGTGGTC----TCTGTTGAAATNTCTGGCGACCTGTAATAAATTCAAATTACGTCCGTTGATTTGTAAAGAACGAAATCGAGAATTTGAGAACATAT---------------TTGTAAGCACAAACA-----ACAAATATAGTGAAGGAAAAACAAACCTCTCTTAA-ACTGCGCCCAGCTTGGACCATGCCAACGGCTCTTGCGCGTTC-TTGTGTAGACATGCGCCGCAT-TATACACAACTGTTTTCTTGTTTTTC-GAATACAACTAACT----CTAGAGAACACGTGGATACTAAACC-TTTCAAGA-GAAAAACC-CGGGA-AANATCTCGAAATCGCTCATCATGCTTTT-CAACAATAACGGTCACGGTCGAG--TAACT-ACAAATTCGATTGCA------------------AACAGTTC-AGCATTGTAAAAGG---CAAACAATATTAAAGTCCATTGATCATAAATTCTNAAATAGTTTT-CAAAC-CTTTGAGAAATAAAAGTG---GGGCGT-TAGAAATTTTGACC-AGTAT
Alignments
lowQualScore : 1111111111111111111111111111111111111111111111
lowQualScore : 1 1111 444444444444444444 11111 1 11 1111 11111111 1111111111111111111111111111111111111111111111 111 111
lowQualScore : 5 5 1 4 1 5 0 66 1 5 77 5 1 0 5 6 1 0 1 0 5 6 6 2 2222 1 0 1 1 1 1 333333333333333333 0 22222 0 8 1 1 5 5 1 55 6 1 33 2222 88 6 666 33333333 1 6 3 99 6 3 2222222222222222222222222222222222222222222222 6 111 1 6 77 111 6 6
lowQualScore : . . . . . . . .. . . .. . . . . . . . . . . . . . .... . . . . . . .................. . ..... . . . . . . . .. . . .. .... .. . ... ........ . . . .. . . .............................................. . ... . . .. ... . .
lowQualScore : 2 2 0 0 6 7 7 11 3 7 99 7 4 4 7 6 7 6 7 4 7 6 7 5 1111 0 3 3 4 4 7 111111111111111111 1 55555 8 5 4 5 7 7 7 77 7 7 00 1111 77 7 888 77777777 0 7 8 22 7 2 5555555555555555555555555555555555555555555555 7 777 0 7 77 777 7 7
consensus : ATATACTAATCAAAATTTCTAACGCCCCAGCAAACNTTTCGAATTGCACTGTTT-TTCTATT-CGATTATTTTGACTATAACGTTTGATCAGTATAAAGAATAAAAA-GAAAC--AAAAC-AAA-TGTT-TTCACCGAATCNATTTTTATTCAAGTTGCACGATGTTTTGGCCGTCG-AGGCAGNTCGTCTACACTTCCGGTTCTGTAGAA-TTTCCGGAGAAGTCTTAAGATAGTTTTGTGGTC----TCTGTTGAAATNTCTGGCGACCTGTAATAAATTCAAATTACGTCCGTTGATTTGTAAAGAACGAAATCGAGAATTTGAG----A----A-----CATGTTTGTAAGCACAAACA-----ACAAATATAGTGAAGGAAAAACAAACCTCTCTTAA-ACTGCGCCCAGCTTGGACCATGCCAACGGCTCTTGCGCGTTC-TTGTGTAGACATGCGCCGCAT-TATACACAACTGTTTTCTTGTTTTTC-GAATACAACTAACT----CTAGAGAACACGTGGATACTAAACC-TTTCAAGA-GAAAAACC-CGGGA-AANATCTCGAAATCGCTCATCATGCTTTT-CAACAATAACGGTCACGGTCGAG--TAACT-ACAAATTCGATTGC---------------A----------------A-------------ACAGTTC-AGCATTGTAAAAGG---CAAACAATATTAAAGTCCATTGATCATAAATTCTNAAATAGTTTT-CAAAC-CTTTGAGAAATAAAAGTG---GGGCGT-TAGAAATTTTGACC-AGTAT
Reference ( family-382 ) : ATATACTAATCAAAATTTCTAACGCCCCAGCAAACNTTTCGAATTGCACTGTTT-TTCTATT-CGATTATTTTGACTATAACGTTTGATCAGTATAAAGAATAAAAA-GAAAC--AAAAC-AAA-TGTT-TTCACCGAATCNATTTTTATTCAAGTTGCACGATGTTTTGGCCGTCG-AGGCAGNTCGTCTACACTTCCGGTTCTGTAGAA-TTTCCGGAGAAGTCTTAAGATAGTTTTGTGGTC----TCTGTTGAAATNTCTGGCGACCTGTAATAAATTCAAATTACGTCCGTTGATTTGTAAAGAACGAAATCGAGAATTTGAG----A----A-----CATATTTGTAAGCACAAACA-----ACAAATATAGTGAAGGAAAAACAAACCTCTCTTAA-ACTGCGCCCAGCTTGGACCATGCCAACGGCTCTTGCGCGTTC-TTGTGTAGACATGCGCCGCAT-TATACACAACTGTTTTCTTGTTTTTC-GAATACAACTAACT----CTAGAGAACACGTGGATACTAAACC-TTTCAAGA-GAAAAACC-CGGGA-AANATCTCGAAATCGCTCATCATGCTTTT-CAACAATAACGGTCACGGTCGAG--TAACT-ACAAATTCGATTGC---------------A----------------A-------------ACAGTTC-AGCATTGTAAAAGG---CAAACAATATTAAAGTCCATTGATCATAAATTCTNAAATAGTTTT-CAAAC-CTTTGAGAAATAAAAGTG---GGGCGT-TAGAAATTTTGACC-AGTAT
gi|1 : ATATACTAATCAAAATTTCTAACGCCCCAGTAAACCTTTCGAATTGCACTGTTT-TTCTATT-TGATAATTTTGACTATAACGTTTGATTAGTATAAAGAATACAAA-GAAAC--AAAAC-AAA-TGTT-TTCACCGAATCTGTTTTTATTTAAATTGCACGATCTTTTATCCGTCG-GGGCAATTCGTGTACACTTCCGGTTCTGTAGGA-TTTCCGGAGAAGTCTTAAGATAGGTTTGTGGTC----TCTCGTGACATTTCTGGCGACCGGTAATAAATTCAAATTACGTCCGTTGATTTGTAAAGTATAAAATTAAAAATTTCAGTCTTAGTATA-----CATGTTTGTATTCACAAACA-----ACAAATAAAAAGAAGGAAAAACAAACTTCTCTTAA-ACTGCGCCCAGCTTGGACTATGCCATCGGCTCTTGCGCGTTC-TTGTGTAGACTTGCATCGCAT-TATACATAACTGTTTTCTTGTTTTTT-GAATTTATCTAACT----CTAGAGAACACGTGCGTACTAAACT-TTTCAAGA-GGAAAACC-TGGGA-AAATTCTCGAAATTGCTCATCTTTCTTTT-CAACAATAACGGTCACGCTCGAG--TAACT-ACAAATTCGATTGCAATTTTTTTTGGTCTA----------------A-------------ACAGTTC-AGCATTGTAAAAGG---CAAACAATATTAAAGTCCATTGATCATAAATTCTTAAATAGTTTT-CAAAT-TTTGGAGAAATAAAAGTG---GGACGT-TAGAAATTTTGACC-AGTAT
gi|10 : A-ACTGCGCCCAGTTTGTACCAATCCAACGGCTCTTCCACGTTC-TAGTATAGACAGGTACCGCAA-TTTACACAATTGTTTTCTTTTATGTA-AAATACAACTAACT----TGAAAGAACACTTGAATACTAAACC-TTTCAAGA-GAAAAACA-C-GGA-AACATCTGAAAATCCCTCATTATGCTTTT-CACTAAT
gi|11 : TTGTAAGCACAAATACGGTAATAAATATAGTGAAGGAAAACAAAAACT-TCGTAA-ATTGCTACCAGCTTGGACCCTGCCAACGGTTCTTGTGCGTTCTTTGTGTAGATATGCGCCGTAT-TTTACGCAGCTGGTTTCTTGTTTTTA-GAATACAGCTAACT----GTAGAGAA
gi|12 : --TAACA-ACAAATTCGATTAC---------------A----------------ATGTTTTGTCCTAAACAGTAC-AGCATTGTAAAAGG---CAAACAATATTAAAGTCCATTGATCATATATTCTGAAATAGATTT-CAAAC-CTTTGACAAATAAAAGTG---GGGAGT-AAGATATTTTGACC-AGTAg
gi|13 : ACATAATAATCAAAATCTTTAACGCCCCAGCAAACACTTTGCATTGCACTGTGT-TTCTGTT-CAATTATTTTCACTATAACGTTTGATCAGTATGAGGAATAAAAA-TAAAC--A-----AAA-TGTT-TTCACCGAATCAGTTTTTATTGAA
gi|14 : ttTGGTA----TCTGTTTAAATTTCTGGCGACCTATAATAAATTCAAA---CGTCTATTAACTTGTATAGAACAAAGTCGAGAATTTGAG----A----A-----CA-ATTTGTAAGCACAAACA-----ACAAATATAGTAAAGGAAAAA-AAA-CTCT
gi|15 : ---------------A----------------A-------------ACAGTTC-AGCATTGTAAAAAG---CAAACAATATTAAAGTCAATTGATCATACATTCGGAAATAGTTTT-CAAAC-ATTTGAGAAATAAAAGTG---GGACGT-TAGAAATTTTGACC-ATTAT
gi|16 : tttggcctCT----CTAGAGAACACATGT-TACTAAACT-TTTCAAAAGGAAAAACC-CGGGA-AAAATCTCGAAATCGCTCa
gi|2 : ATATATTAATCAACATCTGTAACGCCCTATGAAACTTTTTGAATTACATTGCTT-TTATATT-CAATTATTTTGACTATAACGTTGGATCAGTATTCAGAATAAAAA-GAAAT--AAAAC-AAA-AAAAATTCATTAAAGTAATTTTTATTCAAACAGCAAGATGT-----CCATCGAAGGGAG------------TCCGGTTCTGAAGAA-TTTCTGGACAAGTATTAAGATAGTATTGCTGTC----TCTGTTGAAATATCCGACGACCTGTAATGATTATAAATTACGTATG-CAATTTGTAAAAAACAAAATTGACAATTTGAG----A----A-----C-TA-TTGTAAGCACAAACA-----ACAACTATTGTGAAAG-AAAACAAACCTGTCCTAA-TATTCACCCTGTGTGGACCATGTTAACGGCTCTTTTGAGTT--TTGTGTCGACATGAGCCGCATATATTC-TAACTGTTTTCTTCTTTTTTAGAACACAACTTACT----CTAG----------------AAATC-ATTCAA-A-GGGAAACA-CGGAA-AACATCTCGAAATCGTTCAACATGTTTTT-CAATGATGAAGCTCGCGGTCGAA--TAACA-GCAAACTCGATTGC---------------ATTTTGTTTTTTGGCTCA-------------ACAGTTC-AGCATTGTAAAAAAAATCAAACAATACTGAAGTTCATTGTTCATAAATTCTTAATTAGTATT-AAAAC-CTTTGAGAAATAAGAATG---GGGTGT-TAGAATTTTTGACC-AGTATgat
gi|3 : tAAACCATTCGAATTGCACTGCTTATTGTATT-TGATTATTTTGATTATAAGGTTTGATCAGTATAAAGAATACAAA-GAAAC--AAACA-AAA-TCTT-TTCACCGAATCTATTTTTATTAAAGTTTCACGATATTTTAGCCGTCA-AACCCATTCCTCTGGACTTTTGGTTCTGTAGAA-TTTCCGGCGAAGTCATAAGATATATTTGTAG------ACTGTTGAAATCTCTGGCGACCGGTAATAAATTCAAATTACGTCCGTTGATTTGTAAAGAACAAATTTGAGAATT-------------------CATGTTTGTAAGCACAAACA-----ACAAATAAAGCGAAGG-AAAACAAACTTCTCGTAT-ACTGCGACCAGCTTGGACCATGCCAATGACTCTTGTGCGTTC-TTGTGTAGACATGCACCGCAT-TATACACAACTGTTTTCTTGCTTTTT-TAATATAACTAACG----TTAGAGAACATGTGGGTACTa
gi|4 : TGCATGTTATTTTGGCCGTCG-AGGCAGGTTGTCTACACTTCCGTTTTTGTTGAA-TTTCCGAACAAGTCTTAAGATGGTTTTGTGATCGCTGTCTGTTTAAATATCAGGCTACCTCTAATAAATTCAAATTACTTCCGTTAATTCGTATAGAACAAAATCAAGGTTTTGAG----A----A-----C-CATTAGTATATACAAACA-----ACAAATATAGTGCA---AAAACAAACCTCT-TTAACACTGCGCCCAGGTCGGACCATGCCAATGGCTCTTGCGCGTTC-TTGTG----CATG-------T-TACGCAC--CTGTTTTCTTGTTTTTC-GAATACAACTAATTAAATCTAAAGAACACGTGGATAGAAGAAT-ATTCAATC-TAAAAA----------AAATCCTGGAA-------------------AACA-TAAAGGTTACAGTTGAG--TAATT-ACAAATTCGATg
gi|5 : ttctgttgacgtgtcgaACTAATAAAGATTT-TATCGCCCCAGCAAACATTT-----TACA----------TATCACAGTTACTTTGACTATAACGTTTGATCAGTATAAA-AATAAAAAAGAAAC--AAAAC-AAACTGTT-TTCACTGAATCAAATTTTATTCAAGTTGCACGGTGTTTTGGCCTTTG-AGGCTGATCGACTATACTTCCGTTTCTGTGGAAATTT--------------AGGTAGTTTTGTGGTC----TCTGTTGAAATTTCTGGAGTCCTGTAACGAATTCAAATTACTTCCATGAATTTGTAAAGAATGAAACTGAGAATTAGAG----A----A-----AA-ACTTGTAAACACAAACA-----GCAAATATAGTGAAGG-AAAACAAACCTCTCTTAA-ACTACACCCAGCTTCGACCATGCCAACATCTCTTGCGCGTTC-TTGTGAAGACACGTGC
gi|6 : ATA-TAATCAAAATTTCTAATGCCCCAGTAAACCTTTCGAATTGCACTGTTT-TTCTATT-TGATTATTTTGACTATAACGTTTGATCAGTATAAAGAATACAAA-GAAAC--AAAAC-AAAATATT-TTCACCGAATCTATTAATATTCAAGTTGCACGATCTTTTAGCCGTCC-AGGCAATTCGTCTACACTTCCGGTTCTGTAAAA-TTACCGGAGAAGTCTTGAGATGGTTTTGTGGTT----TCTGTTGAAATCTCGGGCGACCGGTAATAAATTCAACTTACGTCCGTTGATTTATAAATAACGAAATTGAGAATTTGAG----ACTT-AGTATCCATGTTTGTAAGTACAAACA-----ACAAATAAAGCGAAGG-AAAATAAACTTCTC
gi|7 : taGCGGATACTAAACCATTTCAAGA-GAAAAACCGCTTTATAACATCTCGAAATCGCTACTCACGCCTTT-CAACAAT-ACGGTTACGGTTGTGTATAACTAACAAATTTTATT---------------------------------------------------------GCATTGTACAGGC---TAACCAATATTAAG--CCATTGATAATAAATT-TGAAATAGTTTTAAAAACACTTTGAGAAATGAAAGTGGCCGGGTATATAGAAATTTC--CCAAGTAT
gi|8 : ttctgaagttaaaattccatccctagTATACTAATCAAAATTTCTAATGCCGCAGCAATCATTTTGTATTGCACAGTTT-TTCTATA-GAATTATTTTGACTATGACGTTTGACTAGTATAAAGAATAAAAA-GAAACCAAAAACAAAA-TATT-TTCG-CGAATC-ATTTTTATTTAACCTGCACGTCGTTTTGGCCATCA-AGGCAGGTCGTCCACATTTa
gi|9 : ATCATGCTTTTTCAACAATAACGGTCACGCTCGAA--TAACT-ACAAATTCGATTGC---------------A----------------A-------------ACAGTTTTAGCATTGTAAAATG---CAAACAATAT---AGTCCTTTGTTCATAAATTCTTAAATAGTCTT-CAAAC-ATTTGAGAAATAAAAGTG---GGGCGT-TAGAAATTTTGACC-ggctg