lowQualScore : 111111111111111111111111111111111 111111111111111111 111111111111111111111 11111111111111111111111111111111111111 111111111111111111111111111111111111111111111111111 111111111111111111111111111111111111111111111111111111111111 111111111111111111111111
lowQualScore : 11 66666666666666666666666666 11 1 1 11 111111 11 111111 444444444444444444444444444444444 1 3333333 1 111 11 1111 1 11 11 3333333 11111 1 2 11 2222 1 111 222 22 1 11 3333 3333333333333333333 11111 666666666666666666 1111111 6666666666666666666666666666666 11111 8888888888888888888888888 1 111 1 1 000000000000000000000 111 55555555555555555555555 33333333 111111 00000000000000000000000000000000000000 111 22222 444 111 999999999999999999999999999999999999999999999999999 11111 11111 1111 333333333333333333 1 11 11 111111 11 6666666666666666666666666666666666666666 11111 22222 1 555555555555555555555555555555555555555555555555555555555555 11 22222 66666666666666666666666666666666666 111 11 222222222222 111 555555555555555555 11 111111 11 111111 44444444444 1 1 1111 11111 1 1111 555555555555555555555555 111 2 11
lowQualScore : 0 11 6 00000000000000000000000000 00 7 7 00 888888 5 5 111111 5 11 666666 5 888 88 111111111111111111111111111111111 0 8 6 9999999 0 333 33 4444 0 8 6 11 8 8 33 8 8 8 1111111 6 6 66666 7 0 8 8 4 8 8 44 5555 6 666 8 444 0 5 5 6 5 3 5 5 77 5 77 5 5 6 6 44 6 77 6 6 1 5 8 00 8 8 0000 8 8888888888888888888 8 0 55555 6 1 0 6 777777777777777777 4444444 6666666666666666666666666666666 8 0 66666 1111111111111111111111111 88 5 2 444 6 8 8 88 3 333333333333333333333 2 99 9999 111 77777777777777777777777 5 33333333 666666 5 55 11111111111111111111111111111111111111 7 5 666 00000 5 88 5 1 33 1 8 222 444 4 0 888888888888888888888888888888888888888888888888888 77777 6 7 1 7 6 22222 6 2222 66 000000000000000000 1 5 11 5 5 88 66 5 222222 5 00 6666666666666666666666666666666666666666 00000 11 33333 77 0 66 111111111111111111111111111111111111111111111111111111111111 5 5 11 5 44444 5 99999999999999999999999999999999999 5 77 1 0 5 111 22 6 6 666666666666 6 555 99 6 99 6 6 6 666666666666666666 6 6 8 11 0 333333 11 0 000000 2 11111111111 6 99 6 7 6 6 6 5 6 8 5 5 0000 2 0 0 2 5 5 44444 1 6 2222 222222222222222222222222 444 0 5 88 8 99 6
lowQualScore : . .. . .......................... .. . . .. ...... . . ...... . .. ...... . ... .. ................................. . . . ....... . ... .. .... . . . .. . . .. . . . ....... . . ..... . . . . . . . .. .... . ... . ... . . . . . . . . .. . .. . . . . .. . .. . . . . . .. . . .... . ................... . . ..... . . . . .................. ....... ............................... . . ..... ......................... .. . . ... . . . .. . ..................... . .. .... ... ....................... . ........ ...... . .. ...................................... . . ... ..... . .. . . .. . . ... ... . . ................................................... ..... . . . . . ..... . .... .. .................. . . .. . . .. .. . ...... . .. ........................................ ..... .. ..... .. . .. ............................................................ . . .. . ..... . ................................... . .. . . . ... .. . . ............ . ... .. . .. . . . .................. . . . .. . ...... .. . ...... . ........... . .. . . . . . . . . . . .... . . . . . . ..... . . .... ........................ ... . . .. . .. .
lowQualScore : 8 00 7 33333333333333333333333333 66 1 1 77 333333 7 7 444444 7 11 444444 0 777 88 000000000000000000000000000000000 6 4 0 8888888 0 888 88 8888 0 8 0 00 0 0 66 0 0 0 8888888 7 7 00000 0 8 0 0 0 0 0 44 0000 0 888 0 888 2 0 0 0 0 0 7 7 99 7 99 3 7 7 7 00 7 33 7 7 4 7 0 66 0 0 6666 0 3333333333333333333 0 8 88888 7 0 7 7 555555555555555555 8888888 8888888888888888888888888888888 0 8 22222 6666666666666666666666666 55 0 5 666 0 0 0 33 5 888888888888888888888 5 22 3333 555 00000000000000000000000 7 11111111 444444 7 99 66666666666666666666666666666666666666 1 0 000 99999 0 99 0 4 44 4 0 444 000 0 8 000000000000000000000000000000000000000000000000000 88888 7 8 7 8 7 77777 7 3333 99 666666666666666666 4 9 99 0 0 55 99 0 000000 0 11 1111111111111111111111111111111111111111 88888 88 11111 55 0 99 111111111111111111111111111111111111111111111111111111111111 0 0 99 0 44444 0 11111111111111111111111111111111111 7 99 7 7 7 777 77 7 7 888888888888 7 333 22 7 22 7 7 7 333333333333333333 7 7 0 00 8 000000 00 8 333333 5 33333333333 0 22 7 2 7 0 7 4 0 0 0 0 6666 2 4 1 0 7 7 33333 0 6 1111 777777777777777777777777 000 0 0 88 0 00 0
consensus : NNCATTACCTCCCT--GCT-AGGT----T-AT-CT-CTTAGT-AGCAT-CTACCAGAGGT-CA-GCA-CTG-ATG--CT--G-ACG-T-CAG--TT-GG-CCA------CATTGC--ATTTT-GGCAC-----GTT-TACA--A-------------TCA-CTCTTAGTACACAC----A--GT-GAAA-ATG--TCA-A--CATCAGAA-AGTGAACT--A-AATAATGAG-AC-AG-A-AC-TG-A--AA-GTATTT-GG-ATA---TNAGTTTGAA-CCA-GAGCTTTAC-A-GAGG-AAG----AAA-TTG-T-TTCCC-AGAATTA-ATGCTT-CCT-CACCA-GNAACTGACT-TT-AATG--AGA-GA--GGANTT-TCTCT-GG-ATTGNTGTGC-TTGTNAAAAAT-TGTTC-AAT-TT-TACC-TACATTCAAG-GA-GTG-TT-TCTGTTGT-CATGAGT--TT-GACCATT-ATG---TTTTGG-ATT---ATATAAA-CATGCACACAAAGTGTATT-TCTCTAC--CCCTG-TG-T----ACAGCGTGTGT-CTA---AGTCCTGTTAT-CCTTG--A---ACAGCT---TGTACATT-ATCTATCTCGGGTACAAAA--GCC---ANAGAGG-ATTCGG-AAGAGCCCCAGAGCACTTACATAA-CAAGTA-AGAAA-AAC-ACAAAC-AAAAGTGGAAA----ATAT----------T--ATCTGC--TGT--A-TTTA-TCAAAAT--C-TAAACATA-GCAT------GCCATTTG-TGTGT----A---AACATTTC------CA-CA-TTCACC---T--A---T-GTAATA------------GGACA--CATTTCTGTT-GC-A-GACAA----TCAAG-ATTTATGGCT-TACA-CAGACAAATTCATTA-ATG-TGGGTCAG---ATGNGGTC------------------AGCCTCT--GA-----C---A-GTAGTN-AGT-TACCCTCA--TGTGTTGTG-ACGGAAATAAGGAAAA-CATTTT--NT-GATGAA-GATGA-CAAA--TT-------AT-C-------AGACTCGGA--AT-A-AGT-AA--TC-TTTCA--AT--AGACA-AAT-GT-------T-ATTG-T-------A-------T---------CACC-A---AACATTAT--CAGTC-TAT-A--TGGTC--------------C---------AT---------ATT----------A-AT--CA--A-TGTA-TA-AA--T-TGT-----ATGATAATAA-A----GCAGTAC-T-T--AT--TAT-CT------T-AC-A--GCAATCTTGTT-TATTTCC---AA-ATAT-TT-AATA------CA--TGTA-TA-T-TCTAATT--GA-T--T-GAATC-TT-GAAATAT---GTGCT-GTT-ACAT-TCA-GAC-A--TCTTTA--TCG-TG--CACTAGC-C-G-TGTAACAGTGACCC--AG--TCTCCAGCAGC--AAT-GTGGC-CA-TTTAC-GTCAGAACACAGATGCATG-CTGGGAATTAAT-G-GATAC----CCTCCATAAACCTTTCATTTAGAGTGT-TTAA-TTG-----ATGAAATCTCCTAAGAGAA----ACAAA----TT-------C-------T--AT---TTTCAGAAGGCATTCTAAG-TTT-GCTGTGCA-AAAATAGTT
Reference ( gi|3 ) : ATCATTACCTCCCT--GCT-AGGC----T-AT-CT-CTTAATTAACAT-CTACCAGAGGT-CA-GCA-CTG-ATG--CT--G-ACG-T-CAG--TT-GG-TCA------CATTGC--ATTTT-GGCAC-----ATTATACAGCA-------------TCAACTCTTATTA-ACAC----A--GT-GACA-ATG--TCA-A--CATCAGAA-AGTGGACT--A-AATAATGAG-AC-AG-A-AC-TG----AA-GTATTT-GG-ATA---TCAGTATGAA-CCA-GAG-TTTAC-A-GAGG-AAG----AAA-TTG-T-TTCCC-AGAATTATATGCTT-CCT-CATCA-GAAACTGACT-TT-AATG--AGA-GA--GGACTT-TCTCT-GG-ATTGTTGTGC-TTGTGAAAAAT-TGTTC-AAT-TT-TACC-TATATTCAAG-GA-GTG-GC-TCTGTTGT-CATGAGT--TT-GACCATT-ATG---TTTTGG-ATT---ATATAAA-CATGCACACAAAGTGCATT-TCTCTA-----------------ACAGCGTGTGT-TTA---AGTCCTGTTAT-ACTTG--A--TACAGCT---TATACATT-ATCTATCTTGGGTACAAAA--CCC---AGAAAGGAATT----AAGAGCTCCATAGCACTTACATAA-CAAGTA-AGAAA-AAC-ACAAAC-AAAAGTGGAAA----ACATACAG------T--ATCTGC--TGT--A-TTTA-TCAAAAT--C-AAAACATA-GCAA------GCCATTTG-TGTGT----A---AACATTTC------CA-CA-TTCACCT--T--A---T-GTAATA------------G------CATTTCTGCT-GC-G-GACAT----TCAAG-ATTTATGGCT-TACA-CAGACAAATTCATTA-ATATTGGGTCAG---ATGTGGTC------------------AG------------------A-GTAGTT-A---TACCCTCA--TGTGTTGTG-ATGGAAATAAAGAAAA-CATTTT--AT-GATGAA-GATGA-CAAA--TT-------AT-C-------AGACTCCGA--AT-A-AGT-TA--TC-TTTCA--AT--AGACA-AAC-GT-------T-ATTG-T-------A-------T---------CACC-A---AACATTAT--CAGTC-TAT-A--TGGTC--------------C---------A----------AT-----------A-AT--CA--G-TGTA-TA-AA--T-TGT-----ATGATAATAA-A----GAAGTAC-T-T--AT--TAT-CT------T-AC-A--GCAATCTTGTT-TATTTCC---AA-ATAT-TT-AATA------CA--TGTA-TA-T-TCTAATT--GA-T--T-GAATC-TT-GAAATAT---GTGTTAATTAACAT-TCA-GAC-A--TCTTTA--TCG-TG--CACTAAC-T-G-TGTAACAGTGACCCTGAG--TCTCTAGCAGC--AAT-GTGAC-CATTTTAC-GTCAGAACACATATGTATG-CTGGGAATTAAT-G-GATAC----CCTCCATAAACCTTTCATTTAGAGTGT-TTAA-TTG-----ATGAAATCTCCTATGAGAA----ACAAA---------------------T--AT---TTTCAGAAGTCCTTCTAAG-TTT-GCTGTGC--AAGATAGTT
gi|5 : CATTACCTTCCTTTGCT-AGG-----T-AT-TTTCTTAG---GCATTCTACACGAGGTGCAAGCAACTG-ATG--CT--G-ACG-TATGG--TT-TG-CCA------TAT--C--ATTT--GGCAC-----ATTCTAC-------------------------TAGTACACAC----A--GT-GAAA-ATAGCTCA-ATGCATCAGAACAGTGAACT--AGAATAACGAG-AC-AG-ATACGTGTAGTGA-GTATTTTGGCATA---TGAATTTGAA-CCA-GAGCTTTACCA-GAG--AAG----AAACTTG-T-TCCCCGAGAATTA-GTG--T-CCT-TACCATGAAACTGACTGTT-AATGTCAGA-GA--GAATTTGTCTCTTGG-ATTGTTGAGC-TTGTAAAAAAT-TGTTCAAAT-TT-TACC-TACATTCAAG-AAGGTGCTC-TCTGTTGT-CATGATA--GT-GACCCAT-AAG---TTTTGGCATTCAGA-ATAAGCCATGCACACAAAGTGTATT-TCTCTA-----------------
gi|1 : attaaaggaagtgttcatgaaaatatgttatacaacttagggcctttaaatatgtcgtcatttttgcatttgtatattaatgaatttttgataatcattacaagtagctttcctccagtaataatatctatgaaagattagtagctaattttacaattccatggaaagctccatattgataataagATTACC--CCT--TCT-AGGT----TTATTCT-CTTGG-----AT-CTCCCAGAGG--CA-GCA-CTG-ATG--CT--GGACG-T-CA---TT-GG-CCA------CATTGC---TTTT-G-CAC-----ATT-------------------------CTCTTAGTA-ACAC----AC-GT-GAAA-ACG--TCA-A--CATCAGAA-AGTGAACCTAA-AATACTGAGGAC--G-A-AC-TG----AA-GTATTT-GG-ATACTATAAATTTGAATCCA-GAG-TTTAT-ACGAGG-AAG----AAAATTG-T-TTTCC-AGAATTATATATTTTCCT-CACCA-GAAACTGACT-TT-AATG--AGA--ATTGAAATT-TCTAT-GGAATTATTGAGCTTTGTT-AAAAT-TGTTC-AAT-TTATACCACAT-TTCAAGAAA-GTG-TTATCTGTTGTCCATGAGT--TT-AACCATTGATG---TTTTGG-A-T---AGATAGA-CATACACACAAAG-GTATT-TCTGTAGCATCCTGACGTTTG--ACAACGTGTGT-GTGTCTAGTCCTG-TGC-AGCTG------ACAGC-------ACATTAATCTATCTCCGG-ACAAAA--GCC---ACAGAGG-ATTCGGGAAGAGCCCCAGAGCACTCACAT---TCAGTAGAGGCATGAC-GAAAAC-GAAA-TGAGAACTAGACATAAAGAAGAAATTGATCTGC--TGCTGA-TTTA-TCAAAATTCT-AAAACAT---TAT------G-CACTTGTTGTGTTTCAA---AACATGTC------CA-CAGTTCACCTAGTCAA---T--TAATG------------GAACA--CATTTCTGTT-GC-A-GACAA----TCAAG-AATTATGGCT-TACA-CAGACCAATTCA-TA-ATG-TGCGT-AG---ATGTGGTCACCTCTGGGGAAAATTCAAG------------------A-GTAGTG-AAT-TACTC-------TGTTGTG-ATG--AATAATGAAAA-CATTTT--TTAGATGAA-GATGA--AAA--TT-------AT-C-------AGACTCGGA--AT-A-A-T-AA--TCTTTTCA--AT--AGACA-AAT-GTTATGTA-T-ATTG-C-------A-------T---------CACC-A---AACATCA----GGTCTTAT-GATTGGTT--------------CATGAAAATTA----------AT-----------A-AT--CA--ATTGTA-TA-AA--T-TGTA----ATGATAATAA-AC---GCAGTAC-T-----T--TATACT------T-ACTA--GCAATCTTGTTCTATTTTCACAAA-GTAT-TT-AATA------CA--TGTATTATT-TCTAATT--GATT--T-GAATC-TT-GAAA-AT---GTG---GTTAACAT-TCA-GAC-A--TCTTTA--T-G-TT--CGC--GC-C-G-------AGT-----------TCTCCAGCAGC--AAT-GTGGC-CA-ATTAC-GTCAGAACACAGATGCATGACT-GGAAT--ATGG-GATAC----CTCCCATAAACCTTTC-TTTAGAGTGT-TTAATTTG-----ATGAAATCT-CTAAGTGAACACTACAAACAGTTTAGGCCATCAC-----T--ATTTATTTCAGAAGGCATTCTAAGTTTT-GCTGTGC--AAAcatcctgacttttgaactcagtgcgagtgt
gi|10 : gtattaagaagtgttcatgaaaatctatgacaagggtttaaaattgtcattttgaatgtaatatgattttgaaaaccatacgatgtgctttccccgtcaaggagatttttcataaagatctaactaattgtacaatccatggagctgccatattgataaattaATTACCTCCCT--GCT-AGGT----T-AT-CT-CT-----AGCAT-CTACCAGAGGT-CA-GCA-CTGTATG--CT--G-ACG-T-CAG--TT-GGGCCA------CAT-GC--ATTTTTGGCAC-----ATT-------------------------CTCTTAGTA-ACAC----AATGT-GAAA-ATG--TCA-A--CATCAGAA-A-TGAACT--A-AATAATGAG-AC-CGAA-AC-TG----AA-GTATTT-GG-ATA---TGAATTTGAA-CCA-GAGTTTTAC-A-GAGA-AGGA---AAA-TAG-T-TTCC---AAATTA-GTGTTT-CCT-CACCA-GAAACTGgaataagttatttctatgaacacttcc
gi|15 : taaaggaagtgttctgaaaatatgaacaaaggtttttaaaattgttcatttgatgtatataatgaattttgaaaatcatacaagatgtagctttcttcagtaaggagatatttcataaagattaactaatttttacaatccatggaagctgccatatgaataaaatATTACCTCCCT--GCT-GGGT----T-AT-CT-C----CTAGCAT-CTAGAAGACAG-CA-GCA-CTA-ATG--TT--G-ACG-T-CAG--TA-AG-AAA------CG-TAT--ATTTT-GGCAC-----GGTGAACAGTA-------------TCAACGCTTATTA-
gi|2 : tctttcaatccttgggagctgccatattgataaattgTTACCTCCCT--GCCGAGGTCTTAT-ATACT-CCTCGTGAATCT-CTACCAGAGGT-C--GC----G-A-G--C-----ATGTT-CAGGATTGGG-TCAACCATTCGTTGCTTAGTTT-GGTACGCATTGTTATTTACCACGGAGACTACCTTTCACTTCTTGCCACCCACTCTAG--GTGGATAAATG--TCACA--CATCACAG-ATTGAACT--A-AATAATGAA-ACGAG-A-AC-TGCAT-AG-GTATTT-GA-ATA---T-AGTTTG-A-CCACGAG-TTTAC-A-GAGGCAAGGGCAGAA-TTGATGTTCCC-AGGATT-CATGCTT-CTTACGCAA-GAAA-TGACT-TTAAATG--AGATGA--GGATCT-TTTCT-GG-ATTGTTGTGC-TTGTTGGAAATGTTTTC-AAT-TT-TACC-TA-ATTCAAG-GA-TTA-TT-TCTGTTGT-CATGAGTCCTTGGACCA-T-ATGGTTTTTTGG-ATT---ATATAAA-CATG-ACACAAAGTGCATTATCCCTACATCCCTGTTACTTGACACAGTGTGTGTACTA---AGTCCT-TTATCCCTTG--GACTAC--------GTACATT-ATCTATCTCGAA-ACAAAA--GCCACGAGGAAGG---------GGAGTCCCAGA-CACTTACATAAGCAAGTA-AGAAA-CAC-ACAACCAAAAAGTGGAAA----A-----AA------T--ATCTGC--TGT--A-TT---TCAAATT--CTAAAACTTA-GCAGTGGCATGCTATTT--TGTGT----ACGTAACATTTC------CA-CA-TTCACCG--C--A---T-TCAATG------------GGAGACACATTTCTGTT-GCAA-GACAG----TCAAACGTTTATGGCCGCACATCAGACAAATTC--TAGATGT--GGTCAGCCTCTGGGG---------------------G------------------A-ATAATTCAGATTACCCTCAATTGTGTTGTG-ACTGAAATAAGGAAAA--ATTTTGGAT-AATGAA-GATGA-CAAA--TT-------AC-C-------CAACTCTGGACAT-A-AGT-AA--TC-TTTCA--AT--AGACA-AAT-GTTAATGAAT-ATTG-T-------AG------T---------CACT-C---AACATTATTCCAGTC-TAT-A--TGGTC--------------C---------A----------ATTGGTTCACTGCA-A---CAACA-TGTA-TATAG--T-TTTACATAATGATAATAAGA----GCAGTAC-T-TTAAT--TAT-AT------TGAC-A--GCAATCTTGAT-TTTCTCC---AAGATAA-TT-AATA------CAATTGTA-TATT-TCTAATG--CA-T--TGGAACCTTT-GAAATAT---A-GCTGCTTAA-ATCTCAGGAC-A--TC-TTA---CGTTG--CCGTAACGC-G-TGTAACAG-GACCCTGAAACTCTCCAGCAGCTAAAT--TGAC-CATCTTACTGTCAGAA-ACA
gi|4 : acaatccatgggagtgaggctcgcatcatctttagataacaattaat-AGGG----T-AT-CC-ATTAATT------C--CCAG-----CATGCATCTG--TG--TTCAG-ACG-T-AAA--TT-GG-CCA------CATTGC--agtg
gi|1 : tgaattttataaacatgcacacaaagtacgtttctccatcctgattttgacacagtatgtgtctaagtcctgttatcatagagacagcttgcattatctatatcgggtataaaagccacagagcacttacgtatcaagtaagaaaaacacaaacaaaaggtgaaaatatatctgctgtatttatcaaattctaaacatagcatgtcatttgtgtgtaaacattttcacattcacctatgtaataggacacatttctgttgcagacaatcaagatttatggattacacagaaagaatcattaattgggtcagatgcggtcagcctctgggggaaataccctcatgtgttgtgatgcaaataaggaacaccttttatgatgaagatgaacaattatcagattcgaaataagtaatctttcaatagacaaatgttattgtatattgcatcaccaaatattatcagtctatatggtccaattgttcatcaataatcaatgtataaattgtatgataataaagcagtactttatatctatatgatacagtaatcttgttcatttccaaatatttaatatatgtacgtgtatattctaattgattgaatcttgaaatatgtgttaacattcagacatctttatcgtgcactagctgtgtaacagtgacccttagtctccagcaGT-CATGCATCTG--TGTTCT--G-ACG-T--AA--TT-GG-CCA------CATTGC--ccataaacctttcattcagagtgtttaattgatgaaatctcctcagagaaacaaacaagcttttagcctcactatttattttcagaaggccttcgaagtttgctgtgcaaaaatagttttttcatgaacactaccttta
gi|26 : gtattaagaagtgttcatgaaaatctatgacaagggtttaaaattgtcattttgaatgtaatatgattttgaaaaccatacgatgtgctttccccgtcaaggagatttttcataaagatctaactaattgtacaatccatggagctgccatattgataaattaattaccccttctaggtttattctcttggatctcccagaggcagcactgatgctggacgtcattggccacattgcttttgcacattctcttagtaacacacgtgaaaacgtcaacatcagaaagtgaacctaaaatactgaggacgaactgaagtatttggatactataaatttgaatccagagtttatacgaggaagaaaattgttttccagaattatatattttcctcaccagaaactgactttaatgagaattgaaatttctatggaattattgagctttgttaaaattgttcaatttataccacatttcaagaaagtgttatctgttgtccatgagtttaaccattgatgttttggatagatagacatacacacaaaggtatttctgtagcatcctgacgtttgacaacgtgtgtgtgtctagtcctgtgcagctgacagcacattaatctatctccggacaaaagccacagaggattcgggaagagccccagagcactcacattcagtagaggcatgacgaaaacgaaatgagaactagacataaagaagaaattgatctgctgctgatttatcaaaattctaaaacattatgcacttgttgtgtttcaaaacatgtccacagttcacctagtcaattaatggaacacatttctgttgcagacaatcaagaattatggcttacacagaccaattcataatgtgcgtagatgtggtcacctctggggaaaattcaagagtagtgaattactctgttgtgatgaataatgaaaacattttttagatgaagatgaaaattatcagactcggaataataatcttttcaatagacaaatgttatgtatattgcatcaccaaacatcaggtcttatgattggttcatgaaaattaataatcaattgtataaattgtaatgataataaacgcagtactttatacttactagcaatcttgttctattttcacaaagtatttaatacatgtattatttctaattgatttgaatcttgaaaatgtggttaacattcagacatctttatgttcgcgccgagttctccagcaACT--A-AATAGTGAG-AC-AG-A-AG-TA----CATGTATTT-GG-ATA---CCAGtggaatatgggatacctcccataaacctttctttagagtgtttaatttgatgaaatctctaagtgaacactacaaacagtttaggccatcactatttatttcagaaggcattctaagttttgctgtgcaaaagaataagttatttctatgaacacttcc
gi|21 : -GG-ATA---TCAGTTCAAA-TCT-GAGCTTTAC-A-GAGA-AAA----AAA-TCG---TTCTC-ATACT--GATGCTT-CTT-CACCA-ACAATTGA-T-TT-AACG--AAA-GG--GGGATT-Taa
gi|12 : ATGCTT-CCT-GACCA-GCAACTGACT-TT-AATG--AGA-GA--GTAATT-TCTAT-GG-ATTGGTATGG-TTGT-AAATAT-TGTTC-AAT-TT-TACC-TACATTCAAG-GA-GTG-TC-TCTGTTGT-CATGAGT---------------------------TT---ATATAAA-CATGCACACAAAGTGTATT-TCTCTACATCCTGACTGTGAC--ACAGTGTGTGT-CTA---AGTCCTGTTAT-CCTTGAAA--CACAGCTAGCT-TACATT-ATCTATCTCAGGTACGAAA--GCC---AGAGAGGt
gi|22 : gATGCTC-TCC-CACCA-GCGACTGACT-TT-AATG--AGA-GA--GGACTT-TCTCG-GG-ATTCGTGTGC-TTGTG-AAAAT-TGTTC-AATGTC-TACcagaacactt
gi|23 : ATGCTT-TCC-CACCA-GCGACTGACT-TT-AATG---GA-GA--GGACTT-TCTCG-GG-ATTCGTGTGC-TTGTG-AAAAT-TGTTC-AATGTC-TACtc
gi|25 : -TT-AACC-TACATTCAAG-GA-GTG-TT-TTTGTTGT-TATGAGT--TT-GAATATT-ATtc
gi|4 : TGA-ATT---TTATAAA-CATGCACACAAAGTACGTT-TCTCCATCCTGATTTTGAC----ACAGTATGTGT-CTA---AGTCCTGTTAT-CATAG--A--GACAGCT---TG--CATT-ATCTATATCGGGTATAAAA--GCC---A----------------------CAGAGCACTTACGTAT-CAAGTA-AGAAA-AAC-ACAAAC-AAAAGGTGAAA----ATATA-------------TCTGC--TGT--A-TTTA-TCAAATT--C-TAAACATA-GCAT------GTCATTTG-TGTGT----A---AACATTTT------CA-CA-TTCACCT-----A---T-GTAATA------------GGACA--CATTTCTGTT-GC-A-GACAA----TCAAG-ATTTATGGAT-TACA-CAGAAAGAATCATTA-AT--TGGGTCAG---ATGCGGTC------------------AGCCTCT-------------G-GGGGAA-A---TACCCTCA--TGTGTTGTG-ATGCAAATAAGGAACA-CCTTTT--AT-GATGAA-GATGA-ACAA--TT-------AT-C-------AGATTCGAA--AT-A-AGT-AA--TC-TTTCA--AT--AGACA-AAT-GT-------T-ATTG-T-------A-------TATTGCAT--CACC-A---AATATTAT--CAGTC-TAT-A--TGGTC--------------C---------A----------ATTGTTCATCAATA-AT--CA--A-TGTA-TA-AA--T-TGT-----ATGATAATAA-A----GCAGTAC-T-T--TA--TAT-CTATATGAT-AC-A--GTAATCTTGTT-CATTTCC---AA-ATAT-TT-AATATATGTACG--TGTA-TA-T-TCTAATT--GA-T--T-GAATC-TT-GAAATAT---GTGTTAA----CAT-TCA-GAC-A--TCTTTA--TCG-TG--CACTAGC-T-G-TGTAACAGTGACCCTTAG--TCTCCAGCAGC--AAT-GTGGC-CAATTTAC-GTCTGAACACAGATGCATG-CTGGGAATTAAT-G-GATAC----CCTCCATAAACCTTTCATTCAGAGTGT-TTAA-TTG-----ATGAAATCTCCTCAGAGAA----ACAAACAAGCTTTTAGCCTCACTATTT--AT---TTTCAGAAGGCCTTCGAAG-TTT-GCTGTGCA-AAAATAGTT
gi|11 : -CAT-CACACAAAGTGTATT-TCTCTA------------------CATCCTGACT-TTG---A---C--------CTTG--A----CAGCT---TA---ATT-A-CTATCTCG--TACAAAAAGCTC---ACAGAGGAATTCGG-AAGAGCCCCAGAGCACTTACATCA-GAAGTATAAAAA-AACCACAAAT------------------------------T--ATCTGCCTTGT--A-TT-A-TCAACATT-C-TAAACATAAGCAT------TCCATTTG-TGTTT----ACA-AACATTTT------CAACA-TTCAC-------A---TAGTAATT------------GGATA--CATTTCTGTTTGC-AAGACCA----TCA-G-ATTTATGGCT-TACA-CA-ACAAA-TCATttttcatgaacactaccttta
gi|14 : TAA-CAAGTA-AGTAA-AAC-ACAAAC-AAAAATGAAAA----ATAT------------------C--TGT--G-TTCA-T-AAAAT-----------------------GCCAATTG-TGTGT----A---AACATTTC------CA-CG-CATACC---T--A---T-GTGATA------------GAACA--CAATTCTGTT-TG-A-TACAA----TCAAG-AGTTATGGCG-T--A-CAGAT-AATTCATaac
gi|7 : CAAAC-AAAA-TGGAAA----AT------------T--AT-TGC--TGT--AATTTAATCAAAAT--T-TAAACA-A-TCATT-----GCAATTTG-TGTGTTTACA---AACATT--------CA-C--TTCAC----T--A---T-GTACTACGGACACATTGTA------CATTTCTGTT-GC-A-GACAT-----CAAG-ATGTATGGCT-TACA--AGACAATTTCATTA-AT--TGGGTCAG---ATGTGGTC------------------AGCCTCTGGGAAAATTCAG-ATGTAGTC-AGT-TACTCT-----GTGTTGTGCATGGAT-TAAGGAAAA-CATTTT--AT-GATGAA-GATGAACAAAATTT-------AT-C-------AGACTCAGA--ATTA-AGT-AA--TC-TTTCA---T--AGACA-AAT-GT-------T-ATTG-T-------A-------TAATTGCAGTCACCTC---AACAT-----CAGTC-TAT-A--TGGTC------------------------ATTGAAAAATTAT-----------A-ATACCA----TG-A-TA-AAA-T-TGTTA---ATGATAATAA-G----------C-T-T--A-----------------AC-A--GCAAT-TTGTT-TATTTCC---AA--TAT-TTTAATA------CA--T-TA-TA-TATTTAATTTTAA-T--T-GAATC-TTTGAAA----------------------CA-GACCA--TCTTTAAATCG-TGGCCACTAGC-TTG-CGTAACAGT------------CTCCAGCAGC--AATTGTGGC-CATTT-A--GTCAGAACACAAATGCATG-CTGG-AATTAAT-G-GATAG----C-TCCATAC-CCTTTCATTTAGAGTGC-TTAA-TTG------TGAAATCT
gi|6 : ------GCCATTTG-TGTGT----A---AACATTTCAAATAACA-CA-AACATGA--T--AGGGT-ATAGTA------------A------CAATT--AAT-GC-A-GACATGCACTCAAC-ATTTATGGC---ATA-AAGACAG-TTTATCA-AC--TGGGTCAG---ACGAGGTC------------------AGCATCTTAGAGTGAGCTAGA-GTAGTT-C---TACTCTCA------TTGTG-ACAAAAGTTAGAGAGG-CATTTC--CT-GATGAATGCTG--C-AA--TT----------------------TCTGA--AT-ATAATGTATTTT-TTTCAGTAT--AAATA-AACTGTA------A-ATTG-C-------A-------T---------CACC-A---AA-ATT-C--CTGT--TAA-A-----TC--------------C---------AT---------GT-----------A-----C-----TGTACTA-CA--T-CA------ATCATAATCA-A---------AC---T--GT--TAT-AT------G-AC-ACGGTGACC-----------CC---AA-TTATATT-CACAC-----CA--TATA-AA-A-TC-AGTT--GA-TTAT-GAATC-CT-GAAATATACAGTGCTTGTGTACAT-TGA-GA
gi|27 : atATTTCTGTT-GC-A-GACAA----TCAAG-ATTTATGGCC-CACA-CAGACagttggaggagctcatgcaagagatttttttcttccttgatggtgcattgtttcaattctttcaatttgcacaaaaaccttatccatgaattctaatataaatccattatcttctgctgcaaagtaacccagttaccaacagcaatgtgtctcatctacatcaaagcacagttgcatgctgggaaataatggatgcatgaccttcataaacctttcatttaga
gi|8 : CCTCA--TGTGTTGTG-ATGAAAATAAGGGAAATCATTTC--CC-GATGAA-GATGG-CAAA--TTCGGAGGAAT-TTTCTAATAGAATCGGA--AT-A-AGT-AA--TC-TTTCA--GTGCAAACA-ATT-GT-------T-ATCG-T-------AAATTGATT---------TACC-A---AAATTTAT--CAGTC-TAC-A--TGCTC--------------C---------ATGTATATCT-AT-----------A-AT--CA--A-TGTA-TA-AA--T-TGT-----ATGACAATAC-A----GCAGTATGT-T--ATAATAT-CT------T-TT-A--GCAATCTTGTT-TATTTCG---AG-ACAT-CT-AATA------C------A-TA-T-TCTAACT--GA-T--T----T-----------T---GTGTT--TTGGCAT-TCA-GGC-ATCTCTTTA--TCA-TG--CACTAAT-T-A-TGTAACAGTGACCC--AA--ACTACAGCAGC--AAT-GAGTC-TAATTTAC-GTCAGAACACAGATGCATG-CTGGGAATTCAT-G-GA-AC----CTTCCATAAACC-------------GT-TTAA-TTG-----ATGACATTTCCTAGGAGAA----ACGAA---------------------C--A
gi|9 : gggtcagacctagtcggcctctgcggaaaaaaAAA--TTT------ATAC-------AGGACCGGAG-AT-A-AGT-AA--TC-TTTCA--ATA-AGACATAAT-GT-------TAATTGATACATGCGA-------T---------CACC-A---AAC---AT--CAGT--TATAA--TGGTCAATTTTGACGAATAT---------A----------AT-----------A-AT--CA--A-TGTA-TG-AAGGT-TGT-----AT-ATAATCA-ACCTTAGAGTCC-TCT--AT--T--------------C-A--G-----TTCTT-TATTTCaacaagttcttagccacacttttaatttttagaagacctagtttttcatcctaaagtgtttttttttcatgaacacttaatttagtttttgt
gi|18 : aaA--TT-------AT-C-------AGACTC-GA--AT-A-AG---A---C-TTTCA--TT--AAAC-------------------TG-C-------A-------T---------CACC-ATCAAACAT-----CAGTC-TATCA--TGGTC--------------C---------A----------ATTTGAACAGAATATAT--CA--A-TGTA-TA-AA--TATGT-----ATGATAATAA-A----tgattagggcagccctatcttgtgttatccattaatccaaatagttctttccccaagataattttatacattggggcatgagtagtattcttgaaatatgtcatcatggtgtgaacaaatttcaagaggcggattctcttttcgtgtcatctaggactttcgattgtatgttcacatgttttttagcggccttcgataatcattcccagtgctcattggcaatgttttgaggccattatttaacgtacagactttgacacagaattacagattgacttggtagacattaatgttaacgagctacctcataatcttctaatttagagtgtattaattgaatgcataaaatctctgtaatcagagacttaacaaa
gi|6 : C-T-GCTGCAA-AGTAACCC--AG--TTACCAACAGC--AAT-GTGTCTCA-TCTAC-ATCAAAGCACAGTTGCATG-CTGGGAAATAAT-G-GATGCATGACCTTCATAAACCTTTCATTTAGAc
gi|19 : atgccatttgtgtgtaaacatttcaaataacacaaacatgatagggtatagtaacaattaatgcagacatgcactcaacatttatggcataaagacagtttatcaactgggtcagacgaggtcagcatcttagagtgagctagagtagttctactctcattgtgacaaaagttagagaggcatttcctgatgaatgctgcaatttctgaatataatgtatttttttcagtataaataaactgtaaattgcatcaccaaaattcctgttaaatccatgtactgtactacatcaatcataatcaaactgttatatgacacggtgaccccaattatattcacaccatataaaatcagttgattatgaatcctgaaatatacagtgcttgtgtacattgagaagttggaggagctcatgcaagagatttttttcttccttgatggtgcattgtttcaattctttcaatttgcacaaaaaccttatccatgaattctaatataaatccattatcttGAAATAAT-G-GATTG----CCTCCATAAAACTTTCACTTGGAGTCT-TTGA-TTG-----ATCATATCTTGTAATAGAA----ACAA
gi|9 : taaatgcttatttTTAAC-GAGCTAC----CT--CATAATCTTCTAATTTAGAGTGTATTAA-TTGAATGCATAAAATCTCgcaaattggctttag
gi|16 : aaaaatttatacaggaccggagataagtaatctttcaataagacataatgttaattgatacatgcgatcaccaaacatcagttataatggtcaattttgacgaatataataatcaatgtatgaaggttgtatataatcaaccttagagtcctctattcagttctttatttctgattagggcagccctatcttgtgttatccattaatccaaatagttctttccccaagataattttatacattggggcatgagtagtattcttgaaatatgtcatcatggtgtgaacaaatttcaagaggcggattctcttttcgtgtcatctaggactttcgattgtatgttcacatgttttttagcggccttcgataatcattcccagtgctcattggcaatgttttgaggccattatttaacgtacagactttgacacagaattacagattgacttggtagacattaatgTAAT-G-GATAC----CCTCCATAAACCTTTCAATT--AGTGT-TTAA-TTG-----ATGAAATCTCTTAAGAGAA----ACATAGTTTTTAGCCTCACTATT---T--AT---TTTCAGAAGGCATTCTAAG-TTT-GCTGTGC--AAAtgtaatcagagacttaacaaa
gi|20 : A----ACACA---------------------TTTAT---TTTCATCAG-CCTTCTAAG-TTTTGCTGTGCAAAAAATAGTatatttttttcatgaacacttc
gi|24 : gaaacaagtgcA----ACTAT---------------------T--AT---TTTCAGAAGGCATTCTAAG--TT-G-TGTGC--AAActttttcatgacacttcctttaacgaaattgtct
2 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|13 ): TTTAAAGTAGGTGTTCATGAAAATATGACAAAGGGTTTAAAATTGTCATTTTGATGTATATAATGAATTCTGAAAATAATAAAGATGTAGCTTTCTTCAGTAAGGAGATATCTTATAAAGATTAACAAATCTTTACAATCCATCGAACT
Unaligned ( gi|17 ): AGGAAGTGTTCATGAAAATATGACAAATGGTTTAAAGTATATAATGCTCTTTGAATATCATAGAGATATAGCTTCCTTCGGTAAGGACATATTTCATACGACAAACAAATCTTTACAATCC
Alignments
lowQualScore : 111111111111111111111111111111111111 111111111111111111111111111111 11111111111111111111111111111111111111111111 1111111111111111111111111111111111111111111111111111111111 1111111111111111111111111111111111
lowQualScore : 111111 1 33333 111 333333333333333333333333333333333333 11 3333333 11 11 11 33333333 111 1 111111 1 111 22 1 11111 111 111 000000000000000000000000000000 1111 2222 333333 11 33333333 1111111 333333333 222222222 2222222222222 22222222 11 1111111 2222222 11111 22 00000000000000000000000000000000000000000000 111 1111111 1111111 11 55555555555555555555555555555555 11111111 0000000000000000000000000000000000000000000000000000000000 22222 11111 3333333333333333333333 111 111111 111 1 5555555555555555555 11 2222 11111 1111111 11111 11 11111 11111 1111 6666666666666666666666666666666666 111
lowQualScore : 99 6 666666 3 88888 6 99 111 6 6 6 6 99 6 6 99 7 99 6 333333333333333333333333333333333333 8 88 1111111 11 11 8 11 8 5 99 6 6 99 6 6 6 77777777 5 5 000 6 6 6 2 6 6 6 444444 3 222 6 1 8 4 4 4 1 5 5 66 5 66 1 5 5 5 1 5 00 5 5 0 5 1 6 6 6 6666 6 44444 999 444 6 111 3 5 5 333333333333333333333333333333 4444 4 6 1 2 6 6 2 6666 000000 6 1 7 6 6 00 77777777 5555555 6 99 333333333 5 555 44 1 999999999 0 77 77 5 777 7777 5 5555555555555 5 5 77777777 5555 5 22 2222222 5 777 5555555 4 4 4 33333 4 66 4 0 00 0 88 1 66666666666666666666666666666666666666666666 0 222 5 1 5 0 5 888 5 5 6666 66 8888888 4 4444444 0 4 0 8 4 4 4 4 66 00 4 4 99999999999999999999999999999999 88888 00000000 55 8 66 1111111111111111111111111111111111111111111111111111111111 4 4 4 4 66 4 11111 555 00000 5 0000000000000000000000 5 66 0 5 000 5 666 666666 5 77 6 5 111 77 5 77 5 1 2222222222222222222 5 5 5 99 99 6 99 44 0 7 44 4444 66 5 22222 0 5 5 0000000 666 5 22222 66 888 11 5 66 5 1 4 11111 66 9999 5 5 22222 5 888 888 0000 5 2222222222222222222222222222222222 111 7 6 6 6
lowQualScore : .. . ...... . ..... . .. ... . . . . .. . . .. . .. . .................................... . .. ....... .. .. . .. . . .. . . .. . . . ........ . . ... . . . . . . . ...... . ... . . . . . . . . . .. . .. . . . . . . .. . . . . . . . . .... . ..... ... ... . ... . . . .............................. .... . . . . . . . .... ...... . . . . . .. ........ ....... . .. ......... . ... .. . ......... . .. .. . ... .... . ............. . . ........ .... . .. ....... . ... ....... . . . ..... . .. . . .. . .. . ............................................ . ... . . . . . ... . . .... .. ....... . ....... . . . . . . . . .. .. . . ................................ ..... ........ .. . .. .......................................................... . . . . .. . ..... ... ..... . ...................... . .. . . ... . ... ...... . .. . . ... .. . .. . . ................... . . . .. .. . .. .. . . .. .... .. . ..... . . . ....... ... . ..... .. ... .. . .. . . . ..... .. .... . . ..... . ... ... .... . .................................. ... . . . .
lowQualScore : 22 7 222222 3 55555 7 88 777 7 7 7 7 22 7 7 22 3 22 7 444444444444444444444444444444444444 0 00 8888888 00 00 0 00 0 0 22 7 7 88 7 7 7 77777777 7 7 000 6 7 7 0 7 7 7 333333 3 555 7 7 9 4 4 4 0 0 0 99 0 99 0 0 7 7 0 7 77 7 7 0 0 0 7 7 7 8888 7 00000 222 000 7 777 2 7 7 666666666666666666666666666666 2222 8 7 7 5 7 7 5 7777 777777 7 0 3 7 7 77 99999999 3333333 7 22 333333333 7 999 66 4 444444444 7 99 99 7 333 7777 7 1111111111111 0 0 99999999 2222 0 55 8888888 0 111 6666666 4 4 4 22222 4 99 4 1 88 1 55 0 33333333333333333333333333333333333333333333 7 777 7 4 3 1 7 999 7 7 7777 11 9999999 4 4444444 1 4 1 9 4 4 4 4 11 66 4 4 77777777777777777777777777777777 66666 77777777 66 9 11 2222222222222222222222222222222222222222222222222222222222 4 4 4 4 11 4 77777 333 88888 0 4444444444444444444444 0 99 2 0 000 7 111 444444 7 99 6 7 999 99 7 99 7 4 7777777777777777777 7 7 7 22 22 7 22 00 1 9 44 4444 99 0 55555 2 0 0 9999999 222 0 55555 11 888 99 6 99 0 9 4 11111 11 4444 0 0 55555 7 888 888 6666 0 0000000000000000000000000000000000 777 2 7 7 7
consensus : NNCATTACCTCCCT--GCT-AGGT----T-AT-CTCTTAGT-AGCAT-CTACCAGAGGT-C---A-GCA-CTG-ATGCTG-ACG--T-CGGTCGG-CCA--CGTTGC--ATTTT-GGCACG--------TT-TAC---A-------------TCA-CT-CTTAGTA-CACAC----A--GTGAA--AATG--TCA-A--CATCAGAA-AGTGAACT--A-AATAATGAG-AC-AG-A-AC-TG-A-A----GTATTT-GG-ATA---TNAGTTTGAA-CCA-GAGCTT-TA-CAGAGG-AAG-A----AA-TTG-T-TTCCC-AGAATTA-ATGCTT-CCT-CACCA-GAAACTGACT-TTAA-TG--AGA-GA--GGANTT-TCTC-TGG-ATTGTTGTGC-TTGTGAAAAAT-TGTTC-AAT-TT-TACCTACA-TTCAAG-GA-GTG-TC-TCTGTTGT-CATGAGT--TT-GACCATT-ATG---TTTTGG-ATT---ATATAAA-CATGCACACAAAGTGCATT-TCTCTACA-C--C---CTG----T------G-C---ACA----GTGTGTGT-CTAAGTCCTGT-TAT-CCTTGA---ACAGCTTG--TACATT-ATCTATCTCGGGTACAAAA-GC-CACAGAGG-A-TTC-GGAAGAGCCCCAGAGCACTTACAT--A--A-CAAGTA-AGA--AAAAC---------AC-AAAC-A-AAAGTGGAAAATAT----T-ATCTGC--TGT--A-TTTA-TCAAAA-T-CT-AAA------CA-TA-GCAT-GCCATTTG-TGTGT----A---AACATTTCCA-CA-TT-CACC-TATG-----TAATA-G--GACACATT-------TCTGTT-GC-A-GACA---A-TCAAG-ATTTATGGCT-TACA-CAGACAAATTCATTAAT--TGGGTCAGACGTGGTCAGCCTCTG-----------G-------GAG---T-------AG-TNAG-T--TACCCTCA--TGTGTTGTG-ACGGAAATAAGGAAAA-CATTTT--AT-GATGAA-GATG-ACAAA--TT-------AT-C-------AGACTC-GGA-A-TAA-GTA-ATC-TTTCA--AT--AGACA-AA-TGT-------T-ATTG-T-------A---------TCACC-A---AACATTAT--CAGTC-TAT-A--TGGTC--------C--A------------T------AT-------TAA-T-CA----------A-TGTA-T-A-AA--T-TGT-----ATGATAATAA-A-GC----AGTAC-T-T--AT--TAT-CT------T-AC-A--GCAATCTTGTT-TATTTCC---AA-ATA-T-TTAA------TA-CA--TGTA-TA-T-TCTAA--TTGA-T--T-GAATC-TTGAAATAT---GTGT-T-G-T-T-ACAT-TCA-GA-CATCT--TT--ATCG-TG--CACTAGC-CGTGTAACAGTGACCCT---AGTCTCCAGCAGC--AA-TGT-----GGC-C-A-T-T---TA-C-GT-CAGA-----ACACAGA--TGCA---TG--CTGG--GA-ATTAAT-G-----GA--TAC----CCTCCATAAACCTTTCATTTAGAGTGT-TTAA-TTG-----ATGAAATCTCC-TA---AGAGA---A----ACA-AA---T-----------CT-----T----------TTAT---TTTCAGAAGGCATTCTAAG-TTT-GCTGTGC-AAAAATAGTT
Reference ( family-366 ) : NNCATTACCTCCCT--GCT-AGGT----T-AT-CTCTTAGT-AGCAT-CTACCAGAGGT-C---A-GCA-CTG-ATGCTG-ACG--T-CAGTTGG-CCA--CATTGC--ATTTT-GGCACG--------TT-TACA--A-------------TCA-CT-CTTAGTA-CACAC----A--GTGAA--AATG--TCA-A--CATCAGAA-AGTGAACT--A-AATAATGAG-AC-AG-A-AC-TG-A-A---AGTATTT-GG-ATA---TNAGTTTGAA-CCA-GAGCTT-TA-CAGAGG-AAG-A----AA-TTG-T-TTCCC-AGAATTA-ATGCTT-CCT-CACCA-GNAACTGACT-TTAA-TG--AGA-GA--GGANTT-TCTC-TGG-ATTGNTGTGC-TTGTNAAAAAT-TGTTC-AAT-TT-TACCTACA-TTCAAG-GA-GTG-TT-TCTGTTGT-CATGAGT--TT-GACCATT-ATG---TTTTGG-ATT---ATATAAA-CATGCACACAAAGTGTATT-TCTCTAC--C--C---CTG----T------G-T---ACA----GCGTGTGT-CTAAGTCCTGT-TAT-CCTTGA---ACAGCTTG--TACATT-ATCTATCTCGGGTACAAAA-GC-CANAGAGG-A-TTC-GGAAGAGCCCCAGAGCACTTACAT--A--A-CAAGTA-AGA--AAAAC---------AC-AAAC-A-AAAGTGGAAAATAT----T-ATCTGC--TGT--A-TTTA-TCAAAA-T-CT-AAA------CA-TA-GCAT-GCCATTTG-TGTGT----A---AACATTTCCA-CA-TT-CACC-TATG-----TAATA-G--GACACATT-------TCTGTT-GC-A-GACA---A-TCAAG-ATTTATGGCT-TACA-CAGACAAATTCATTAATG-TGGGTCAGATGNGGTCAGCCTCTG-----------A-------CAG---T-------AG-TNAG-T--TACCCTCA--TGTGTTGTG-ACGGAAATAAGGAAAA-CATTTT--NT-GATGAA-GATG-ACAAA--TT-------AT-C-------AGACTC-GGA-A-TAA-GTA-ATC-TTTCA--AT--AGACA-AA-TGT-------T-ATTG-T-------A---------TCACC-A---AACATTAT--CAGTC-TAT-A--TGGTC--------C--A------------T------AT-------TAA-T-CA----------A-TGTA-T-A-AA--T-TGT-----ATGATAATAA-A-GC----AGTAC-T-T--AT--TAT-CT------T-AC-A--GCAATCTTGTT-TATTTCC---AA-ATA-T-TTAA------TA-CA--TGTA-TA-T-TCTAA--TTGA-T--T-GAATC-TTGAAATAT---GTGC-T-G-T-T-ACAT-TCA-GA-CATCT--TT--ATCG-TG--CACTAGC-CGTGTAACAGTGACCC----AGTCTCCAGCAGC--AA-TGT-----GGC-C-A-T-T---TA-C-GT-CAGA-----ACACAGA--TGCA---TG--CTGG--GA-ATTAAT-G-----GA--TAC----CCTCCATAAACCTTTCATTTAGAGTGT-TTAA-TTG-----ATGAAATCTCC-TA---AGAGA---A----ACA-AA---T------------------T----------CTAT---TTTCAGAAGGCATTCTAAG-TTT-GCTGTGC-AAAAATAGTT
gi|1 : ATTACC--CCT--TCT-AGGT----TTATTCTCTTGG-----AT-CTCCCAGAGG--C---A-GCA-CTG-ATGCTGGACG--T-CA-TTGG-CCA--CATTGC---TTTT-G-CACA--------TT-------------------------CT-CTTAGTAACACAC-------GTGAA--AACG--TCA-A--CATCAGAA-AGTGAACCTAA-AATACTGAGGAC--G-A-AC-TG-A-A----GTATTT-GG-ATACTATAAATTTGAATCCA-GAGTTTATA-C-GAGG-AAG-A----AAATTG-T-TTTCC-AGAATTATATATTTTCCT-CACCA-GAAACTGACT-TTAA-TG--AGA--ATTGAAATT-TCTA-TGGAATTATTGAGCTTTGTT-AAAAT-TGTTC-AAT-TTATACC-ACATTTCAAGAAA-GTG-TTATCTGTTGTCCATGAGT--TT-AACCATTGATG---TTTTGG-A-T---AGATAGA-CATACACACAAAG-GTATT-TCTGTAG--CATC---CTGA---C------G-TTTGACAACGTGTGTGTGT-CT-AGTCCTGTGCAG-C--TG----ACAGC------ACATTAATCTATCTCCGG-ACAAAA-GC-CACAGAGG-A-TTCGGGAAGAGCCCCAGAGCACTCACATTCAGTA-GAGGCA-TGACGAAAACGAAATGAGAACTAGAC-ATAAAGAAGAA---AT----TGATCTGC--TGCTGA-TTTA-TCAAAATT-CTAAAA------CA-T---TAT-G-CACTTGTTGTGTTTCAA---AACATGTCCA-CAGTT-CACC-TA-GTCAATTAATG-G--AACACATT-------TCTGTT-GC-A-GACA---A-TCAAG-AATTATGGCT-TACA-CAGACCAATTCA-TAATG-TGCGT-AGATGTGGTCA-CCTCTGGGGAAAATTCAA-------GAG---T-------AG-TGAA-T--TACTC-------TGTTGTG-ATG--AATAATGAAAA-CATTTT--TTAGATGAA-GATG-A-AAA--TT-------AT-C-------AGACTC-GGA-A-TAA--TA-ATCTTTTCA--AT--AGACA-AA-TGTTATGTA-T-ATTG-C-------A---------TCACC-A---AACATCA----GGTCTTAT-GATTGGTT--------C--A------------TGAAA--ATTAA----TAA-T-CA----------ATTGTA-T-A-AA--T-TGTA----ATGATAATAA-ACGC----AGTAC-T-----T--TATACT------T-ACTA--GCAATCTTGTTCTATTTTCACAAA-GTA-T-TTAA------TA-CA--TGTATTATT-TCTAA--TTGATT--T-GAATC-TTGAAA-AT---GTG----G-T-TAACAT-TCA-GA-CATCT--TT--AT-G-TT--CGC--GC-CG------AGT-----------TCTCCAGCAGC--AA-TGT-----GGC-C-A-A-T---TA-C-GT-CAGA-----ACACAGA--TGCA---TGA-CT-G--GA-AT--ATGG-----GA--TAC----CTCCCATAAACCTTTC-TTTAGAGTGT-TTAATTTG-----ATGAAATCT-C-TA---AGTGA---ACACTACA-AACAGT------------------TTAGGCCATCACTATTTATTTCAGAAGGCATTCTAAGTTTT-GCTGTGC-AAAA
gi|10 : gtattaagaagtgttcatgaaaatctatgacaagggtttaaaattgtcattttgaatgtaatatgattttgaaaaccatacgatgtgctttccccgtcaaggagatttttcataaagatctaactaattgtacaatccatggagctgccatattgataaattaATTACCTCCCT--GCT-AGGT----T-AT-CTCT-----AGCAT-CTACCAGAGGT-C---A-GCA-CTGTATGCTG-ACG--T-CAGTTGGGCCA--CAT-GC--ATTTTTGGCACA--------TT-------------------------CT-CTTAGTA--ACAC----AATGTGAA--AATG--TCA-A--CATCAGAA-A-TGAACT--A-AATAATGAG-AC-CGAA-AC-TG---A---AGTATTT-GG-ATA---TGAATTTGAA-CCA-GAGTTT-TA-CAGAGA-AGGAA----AA-TAG-T-TTCC---AAATTA-GTGTTT-CCT-CACCA-GAAACTGgaataagttatttctatgaacacttcc
gi|11 : taaaggaagtgttctgaaaatatgaacaaaggtttttaaaattgttcatttgatgtatataatgaattttgaaaatcatacaagatgtagctttcttcagtaaggagatatttcataaagattaactaatttttacaatccatggaagctgccatatgaataaaat-CAT-CACACAAAGTGTATT-TCTCTACA-T--C---CTG-----------------AC------------T-TTGA------------CCTTGA----CAGCTTA-----ATT-A-CTATCTCG--TACAAAAAGCTCACAGAGG-AATTC-GGAAGAGCCCCAGAGCACTTACAT--C--A-GAAGTATAAA--AAAACC--------AC-AAA-----------------T----T-ATCTGCCTTGT--A-TT-A-TCAACA-TTCT-AAA------CA-TAAGCAT-TCCATTTG-TGTTT----ACA-AACATTTTCAACA-TT-CACA-TA-G-----TAATT-G--GATACATT-------TCTGTTTGC-AAGACC---A-TCA-G-ATTTATGGCT-TACA-CA-ACAAA-TCAT
gi|12 : -ATGCTT-CCT-GACCA-GCAACTGACT-TTAA-TG--AGA-GA--GTAATT-TCTA-TGG-ATTGGTATGG-TTGT-AAATAT-TGTTC-AAT-TT-TACCTACA-TTCAAG-GA-GTG-TC-TCTGTTGT-CATGAGT---------------------------TT---ATATAAA-CATGCACACAAAGTGTATT-TCTCTACATC--CTGACTG----T------GAC---ACA----GTGTGTGT-CTAAGTCCTGT-TAT-CCTTGAAACACAGCTAGCTTACATT-ATCTATCTCAGGTACGAAA-GC-CAGAGAGG-aac
gi|14 : gT--A--A-CAAGTA-AGT--AAAAC---------AC-AAAC-A-AAAATGAAAAATAT-----------C--TGT--G-TTCA-T-----------AAA--------------AT-GCCAATTG-TGTGT----A---AACATTTCCA-CG-CA-TACC-TATG-----TGATA-G--AACACAAT-------TCTGTT-TG-A-TACA---A-TCAAG-AGTTATGGCG-T--A-CAGAT-AATTCATcagaacactt
gi|15 : ATTACCTCCCT--GCT-GGGT----T-AT-CTCC---T-AGCAT-CTAGAAGACAG-C---A-GCA-CTA-ATGTTG-ACG--T-CAGTAAG-AAA--CG-TAT--ATTTT-GGCACG--------
gi|16 : tctttcaatccttgggagctgccatattgataaattgTAAT-G-----GA--TAC----CCTCCATAAACCTTTCAATTAG--TGT-TTAA-TTG-----ATGAAATCTCT-TA---AGAGA---A----ACATAG---TTTTTAGCCTCACTA----T----------TTAT---TTTCAGAAGGCATTCTAAG-TTT-GCTGTGC-AAAAATATTTgtgaacagtatcaacgcttatta
gi|18 : A--TT-------AT-C-------AGACTC-G-A-A-TAA-G---A-C-TTTCA--TT--AAAC-------------------TG-C-------A---------TCACC-ATCAAACAT-----CAGTC-TATCA--TGGTC--------C--AATTTGAACAGAAT------AT---------A-T-CA----------A-TGTA-T-A-AA--TATGT-----ATGATAATAA-A-ttttcatgaacacttc
gi|19 : AAA--TGCT---TA--TTTG--AA-AT-AAT-G-----GA--TTG----CCTCCATAAAACTTTCACTTGGAGTCT-TTGA-TTG-----ATCATATCTTG-TA---ATAGA---A----ACA-Ac
gi|2 : tTTACCTCCCT--GCCGAGGTCTTAT-ATACTCCTCGTGAATCT-CTACCAGAGGT-CGCGA-GCA------TGTTC-AGGATT-GGGTCAA-CCATTCGTTGCTTAGTTT-GGTACGCATTGTTATT-TACC--ACGGAGACTACCTTTCA-CTTCTTGCCA-CCCACTCTAG--GTGGATAAATG--TCACA--CATCACAG-ATTGAACT--A-AATAATGAA-ACGAG-A-AC-TGCATA---GGTATTT-GA-ATA---T-AGTTTGA--CCACGAG-TT-TA-CAGAGGCAAG-GGCAGAA-TTGATGTTCCC-AGGATTC-ATGCTT-CTTACGCAA-GAAA-TGACT-TTAAATG--AGATGA--GGATCT-TTTC-TGG-ATTGTTGTGC-TTGTTGGAAATGTTTTC-AAT-TT-TACCTA-A-TTCAAG-GA-TTA-TT-TCTGTTGT-CATGAGTCCTTGGACCA-T-ATGGTTTTTTGG-ATT---ATATAAA-CATG-ACACAAAGTGCATTATCCCTACATC--C---CTG----TTACTTGA-C---ACA----GTGTGTGTACTAAGTCCT-T-TATCCCTTGG---ACTAC--G--TACATT-ATCTATCTCGAA-ACAAAA-GC-CAC-GAGG-A-----AGGGGAGTCCCAGA-CACTTACAT--A--AGCAAGTA-AGA--AACAC---------AC-AACCAA-AAAGTGGAAAA-AA----T-ATCTGC--TGT--A-TT---TCAAAT-T-CT-AAAACTTAGCAGTG-GCAT-GCTATTT--TGTGT----ACGTAACATTTCCA-CA-TT-CACCGCATT-----CAATG-GGAGACACATT-------TCTGTT-GCAA-GACA---G-TCAAACGTTTATGGCCGCACATCAGACAAATTC-------------TAGATGTGGTCAGCCTCTG-----------G-------GGGAA-T-------AATTCAGAT--TACCCTCAATTGTGTTGTG-ACTGAAATAAGGAAAA--ATTTTGGAT-AATGAA-GATG-ACAAA--TT-------AC-C-------CAACTCTGGACA-TAA-GTA-ATC-TTTCA--AT--AGACA-AA-TGTTAATGAAT-ATTG-T-------AG--------TCACT-C---AACATTATTCCAGTC-TAT-A--TGGTC--------C--A-------------------AT-------TGGTT-CACTGCAACAACA-TGTA-T-ATAG--T-TTTACATAATGATAATAAGA-GC----AGTAC-T-TTAAT--TAT-AT------TGAC-A--GCAATCTTGAT-TTTCTCC---AAGATA-A-TTAA------TA-CAATTGTA-TATT-TCTAA--TGCA-T--TGGAACCTTTGAAATAT---A-GC-T-GCT-T-AAATCTCAGGA-CATC---TT--A-CGTTG--CCGTAACGCGTGTAACAG-GACCCTGAAACTCTCCAGCAGCTAAA-T-T-----GAC-C-A-TCT---TA-CTGT-CAGA-----A-ACAAG--TGgcaaattggctttag
gi|20 : acaatccatgggagtgaggctcgcatcatctttagataacaattaatA---AGTGC---A----ACA-CA---T------------------T-----------TAT---TTTCATCAGCC-TTCTAAG-TTTTGCTGTGCAAAAAATAGT
gi|21 : gaaac-GG-ATA---TCAGTTCAAA-TCT-GAGCTT-TA-CAGAGA-AAA-A----AA-TCG---TTCTC-AT-ACTG-ATGCTT-CTT-CACCA-ACAATTGA-T-TTAA-CG--AAA-GG--GGGATT-Tctttttcatgacacttcctttaacgaaattgtct
gi|22 : -ATGCTC-TCC-CACCA-GCGACTGACT-TTAA-TG--AGA-GA--GGACTT-TCTC-GGG-ATTCGTGTGC-TTGTG-AAAAT-TGTTC-AATGTC-TACt
gi|23 : -ATGCTT-TCC-CACCA-GCGACTGACT-TTAA-TG---GA-GA--GGACTT-TCTC-GGG-ATTCGTGTGC-TTGTG-AAAAT-TGTTC-AATGTC-TACtc
gi|24 : TAT---TTTCAGAAGGCATTCTAAG--TT-G-TGTGC-AAAAATATTTtc
gi|25 : cataaacagtttttcaagcctcaactat-TT-AACCTACA-TTCAAG-GA-GTG-TT-TTTGTTGT-TATGAGT--TT-GAATATT-ATtttttcatgaacact
gi|26 : ACT--A-AATAGTGAG-AC-AG-A-AG-TA-C-A---TGTATTT-GG-ATA---CCAG
gi|27 : ATT-------TCTGTT-GC-A-GACA---A-TCAAG-ATTTATGGCC-CACA-CAGACaa
gi|3 : CATTACCTCCCT--GCT-AGGC----T-AT-CTCTTAATTAACAT-CTACCAGAGGT-C---A-GCA-CTG-ATGCTG-ACG--T-CAGTTGG-TCA--CATTGC--ATTTT-GGCACA--------TTATACAGCA-------------TCAACT-CTTATTA--ACAC----A--GTGAC--AATG--TCA-A--CATCAGAA-AGTGGACT--A-AATAATGAG-AC-AG-A-AC-TG-A-A----GTATTT-GG-ATA---TCAGTATGAA-CCA-GAG-TT-TA-CAGAGG-AAG-A----AA-TTG-T-TTCCC-AGAATTATATGCTT-CCT-CATCA-GAAACTGACT-TTAA-TG--AGA-GA--GGACTT-TCTC-TGG-ATTGTTGTGC-TTGTGAAAAAT-TGTTC-AAT-TT-TACCTATA-TTCAAG-GA-GTG-GC-TCTGTTGT-CATGAGT--TT-GACCATT-ATG---TTTTGG-ATT---ATATAAA-CATGCACACAAAGTGCATT-TCTCTA------------------------------ACA----GCGTGTGT-TTAAGTCCTGT-TAT-ACTTGAT--ACAGCTTA--TACATT-ATCTATCTTGGGTACAAAA-CC-CAGAAAGGAA-TT----AAGAGCTCCATAGCACTTACAT--A--A-CAAGTA-AGA--AAAAC---------AC-AAAC-A-AAAGTGGAAAACATACAGT-ATCTGC--TGT--A-TTTA-TCAAAA-T-CA-AAA------CA-TA-GCAA-GCCATTTG-TGTGT----A---AACATTTCCA-CA-TT-CACCTTATG-----TAATA-G------CATT-------TCTGCT-GC-G-GACA---T-TCAAG-ATTTATGGCT-TACA-CAGACAAATTCATTAATATTGGGTCAGATGTGGTCAG--------------------------AG---T-------AG-TTA-----TACCCTCA--TGTGTTGTG-ATGGAAATAAAGAAAA-CATTTT--AT-GATGAA-GATG-ACAAA--TT-------AT-C-------AGACTC-CGA-A-TAA-GTT-ATC-TTTCA--AT--AGACA-AA-CGT-------T-ATTG-T-------A---------TCACC-A---AACATTAT--CAGTC-TAT-A--TGGTC--------C--A-------------------A--------TAA-T-CA----------G-TGTA-T-A-AA--T-TGT-----ATGATAATAA-A-GA----AGTAC-T-T--AT--TAT-CT------T-AC-A--GCAATCTTGTT-TATTTCC---AA-ATA-T-TTAA------TA-CA--TGTA-TA-T-TCTAA--TTGA-T--T-GAATC-TTGAAATAT---GTGT-TAA-T-TAACAT-TCA-GA-CATCT--TT--ATCG-TG--CACTAAC-TGTGTAACAGTGACCCTG--AGTCTCTAGCAGC--AA-TGT-----GAC-C-ATT-T---TA-C-GT-CAGA-----ACACATA--TGTA---TG--CTGG--GA-ATTAAT-G-----GA--TAC----CCTCCATAAACCTTTCATTTAGAGTGT-TTAA-TTG-----ATGAAATCTCC-TA---TGAGA---A----ACA-AA----------------------------------TAT---TTTCAGAAGTCCTTCTAAG-TTT-GCTGTGC--AAGATAGTT
gi|4 : atTGA-ATT---TTATAAA-CATGCACACAAAGTACGTT-TCTCCAT--C--C----TGATTTT------GAC---ACA----GTATGTGT-CTAAGTCCTGT-TAT-CATAGAG--ACAGCTTG----CATT-ATCTATATCGGGTATAAAA-GC-CA-----------------------CAGAGCACTTACGT--A--T-CAAGTA-AGA--AAAAC---------AC-AAAC-A-AAAGGTGAAAATAT------ATCTGC--TGT--A-TTTA-TCAAAT-T-CT-AAA------CA-TA-GCAT-GTCATTTG-TGTGT----A---AACATTTTCA-CA-TT-CACC-TATG-----TAATA-G--GACACATT-------TCTGTT-GC-A-GACA---A-TCAAG-ATTTATGGAT-TACA-CAGAAAGAATCATTAAT--TGGGTCAGATGCGGTCAGCCTCTG---------------------------------GG-GGAA-A--TACCCTCA--TGTGTTGTG-ATGCAAATAAGGAACA-CCTTTT--AT-GATGAA-GATG-AACAA--TT-------AT-C-------AGATTC-GAA-A-TAA-GTA-ATC-TTTCA--AT--AGACA-AA-TGT-------T-ATTG-TATATTGCA---------TCACC-A---AATATTAT--CAGTC-TAT-A--TGGTC--------C--AAT----------T------GTTCATCAATAA-T-CA----------A-TGTA-T-A-AA--T-TGT-----ATGATAATAA-A-GC----AGTAC-T-T--TA--TAT-CTATATGAT-AC-A--GTAATCTTGTT-CATTTCC---AA-ATA-T-TTAATATATGTA-CG--TGTA-TA-T-TCTAA--TTGA-T--T-GAATC-TTGAAATAT---GTGT-T-A-----ACAT-TCA-GA-CATCT--TT--ATCG-TG--CACTAGC-TGTGTAACAGTGACCCTT--AGTCTCCAGCAGC--AA-TGT-----GGC-CAA-T-T---TA-C-GT-CTGA-----ACACAGA--TGCA---TG--CTGG--GA-ATTAAT-G-----GA--TAC----CCTCCATAAACCTTTCATTCAGAGTGT-TTAA-TTG-----ATGAAATCTCC-TC---AGAGA---A----ACA-AA---CAAGCTTTTAGCCTCACTAT----------TTAT---TTTCAGAAGGCCTTCGAAG-TTT-GCTGTGC-AAAAATAGTT
gi|5 : CATTACCTTCCTTTGCT-AGGT----A-TT-TTCTTAG---GCATTCTACACGAGGTGC---AAGCAACTG-ATGCTG-ACG--TATGGTTTG-CCA--TAT--C--ATTT--GGCACA--------TTCTAC--------------------------TAGTA-CACAC----A--GTGAA--AATAGCTCA-ATGCATCAGAACAGTGAACT--AGAATAACGAG-AC-AG-ATACGTG-T-AGTGAGTATTTTGGCATA---TGAATTTGAA-CCA-GAGCTT-TACCAGA-G-AAG-A----AACTTG-T-TCCCCGAGAATTA-GTG--T-CCT-TACCATGAAACTGACTGTTAA-TGTCAGA-GA--GAATTTGTCTCTTGG-ATTGTTGAGC-TTGTAAAAAAT-TGTTCAAAT-TT-TACCTACA-TTCAAG-AAGGTGCTC-TCTGTTGT-CATGATA--GT-GACCCAT-AAG---TTTTGGCATTCAGA-ATAAGCCATGCACACAAAGTGTATT-TCTCTACA-T--C---CTG----ttttcatgaacactaccttta
gi|6 : attaaaggaagtgttcatgaaaatatgttatacaacttagggcctttaaatatgtcgtcatttttgcatttgtatattaatgaatttttgataatcattacaagtagctttcctccagtaataatatctatgaaagattagtagctaattttacaattccatggaaagctccatattgataataagAT-GCCATTTG-TGTGT----A---AACATTTCAA--A-TAACACA-AACA-----TGATA-G--GGTATAGTAACAA--T-TAAT-GC-A-GACATGCACTCAAC-ATTTATGGC---ATA-AAGACAG-TTTATCAAC--TGGGTCAGACGAGGTCAGCATCTT-----------A-------GAG---TGAGCTAGAG-T-AG-TTCTACTCTCA------TTGTG-ACAAAAGTTAGAGAGG-CATTTC--CT-GATGAATGCTG--C-AA--TT--------T-C-------TGAAT------A-TAATGTATTTT-TTTCAGTAT--AAATA-AACTGTA------A-ATTG-C-------A---------TCACC-A---AA-ATT-C--CTGT--TAA-A-----TC--------C--A------------T------GT--------------A----------C-TGTACT-A-CA--T-CA------ATCATAATCA-A-AC------------T--GT--TAT-AT------G-AC-ACGGTGACC-----------CC---AA-TTA-TATTCA------CACCA--TATA-AA-A-TC-AG--TTGA-TTAT-GAATC-CTGAAATATACAGTGCTT-G-TGT-ACAT-TGA-GA-acttttgaactcagtgcgagtgt
gi|6 : TGCAA-AGTAACCC----AGTTACCAACAGC--AA-TGT-----GTCTC-A-T-C---TA-C-AT-CAAA-----GCACAGT--TGCA---TG--CTGG--GA-AATAAT-G-----GA--TGCATGACCTTCATAAACCTTTCATTTAGAagttggaggagctcatgcaagagatttttttcttccttgatggtgcattgtttcaattctttcaatttgcacaaaaaccttatccatgaattctaatataaatccattatcttctgctgcaaagtaacccagttaccaacagcaatgtgtctcatctacatcaaagcacagttgcatgctgggaaataatggatgcatgaccttcataaacctttcatttaga
gi|7 : atgccatttgtgtgtaaacatttcaaataacacaaacatgatagggtatagtaacaattaatgcagacatgcactcaacatttatggcataaagacagtttatcaactgggtcagacgaggtcagcatcttagagtgagctagagtagttctactctcattgtgacaaaagttagagaggcatttcctgatgaatgctgcaatttctgaatataatgtatttttttcagtataaataaactgtaaattgcatcaccaaaattcctgttaaatccatgtactgtactacatcaatcataatcaaactgttatatgacacggtgaccccaattatattcacaccatataaaatcagttgattatgaatcctgaaatatacagtgcttgtgtacattgagaagttggaggagctcatgcaagagatttttttcttccttgatggtgcattgtttcaattctttcaatttgcacaaaaaccttatccatgaattctaatataaatccattatcttctgcC-AAAC-A-AAA-TGGAAAAT------T-AT-TGC--TGT--AATTTAATCAAAA-T-TT-AAA------CA--A-TCATTGCAATTTG-TGTGTTTACA---AACATT--CA-C--TT-CAC--TATG-----TACTACG--GACACATTGTACATTTCTGTT-GC-A-GACA-----TCAAG-ATGTATGGCT-TACA--AGACAATTTCATTAAT--TGGGTCAGATGTGGTCAGCCTCTG-----------GGAAAATTCAGATGT-------AG-TCAG-T--TACTCT-----GTGTTGTGCATGGAT-TAAGGAAAA-CATTTT--AT-GATGAA-GATGAACAAAATTT-------AT-C-------AGACTC-AGA-ATTAA-GTA-ATC-TTTC---AT--AGACA-AA-TGT-------T-ATTG-T-------ATAATTGCAGTCACCTC---AAC---AT--CAGTC-TAT-A--TGGT---------C--A------------TTGAAAAATTA-----TAA-TACC----------A-TG-A-TAA-AA--T-TGTTA---ATGATAATAA------------GC-T-T--A-----------------AC-A--GCAAT-TTGTT-TATTTCC----A-ATATT-TTAA------TA-CA--T-TA-TA-TATTTAATTTTAA-T--T-GAATCTTTGAAA-------------------------CA-GACCATCT--TTAAATCG-TGGCCACTAGCTTGCGTAA--------C----AGTCTCCAGCAGC--AATTGT-----GGC-C-A-T-T---TA---GT-CAGA-----ACACAAA--TGCA---TG--CT-G--GA-ATTAAT-G-----GA--TA-----GCTCCAT-ACCCTTTCATTTAGAGTGC-TTAA-TTG------TGAAATCT
gi|8 : GGGTCAGACCTAGTCGGCCTCTG-------------------CGG---A-------AA-AAA--------CCTCA--TGTGTTGTG-ATGAAAATAAGGGAAATCATTTC--CC-GATGAA-GATG-GCAAA--TTCGGAGGAAT-TTTCTAATAGAATC-GGA-A-TAA-GTA-ATC-TTTCA--GTGCAAACA-AT-TGT-------T-ATCG-T-------AAATTGAT--TTACC-A---AAATTTAT--CAGTC-TAC-A--TGCTC--------C--A------------T------GTATATCTATAA-T-CA----------A-TGTA-T-A-AA--T-TGT-----ATGACAATAC-A-GC----AGTATGT-T--ATAATAT-CT------T-TT-A--GCAATCTTGTT-TATTTCG---AG-ACA-T-CTAA------TA-CA--T-----A-T-TCTAA--CTGA-T--T-------TTG-----T---GTTT-T-G-----GCAT-TCA-GG-CATCTCTTT--ATCA-TG--CACTAAT-TATGTAACAGTGACCC----AAACTACAGCAGC--AA-TGA-----GTC-T-AAT-T---TA-C-GT-CAGA-----ACACAGA--TGCA---TG--CTGG--GA-ATTCAT-G-----GA---AC----CTTCCATAAACC-------------GT-TTAA-TTG-----ATGACATTTCC-TA---GGAGA---A----ACG-AA---
gi|9 : AAA--TTT------ATAC-------AGGACC-GGAGA-TAA-GTA-ATC-TTTCA--ATA-AGACATAA-TGT-------TAATTGATACATGCGA---------TCACC-A---AAC---AT--CAGT--TATAA--TGGTCAATTTTGACGAA------------T------ATAA-----TAA-T-CA----------A-TGTA-T-G-AAGGT-TGT-----AT-ATAATCA-A-CCTTAGAGTCC-TCT--AT--T--------------C-A--G-----TTCTT-TATTTCcaaacaagttcttagccacacttttaatttttagaagacctagtttttcatcctaaagtgtttttttttcatgaacacttaatttagtttttgt
gi|9 : aaCCC----AGTGCTCATTGGC--AA-TGTTTTGAGGC-C-A-T-TATTTAAC-GTACAGACTTTGACACAGAATTACAGATTGACTTGGTAGACATTAAT-GTTAACGAGCTAC----CT--CATAATCTTCTAATTTAGAGTGTATTAA-TTGAATGCATAAAATCTCTGTAATCAGAGACTTA----ACA-AA---tgattagggcagccctatcttgtgttatccattaatccaaatagttctttccccaagataattttatacattggggcatgagtagtattcttgaaatatgtcatcatggtgtgaacaaatttcaagaggcggattctcttttcgtgtcatctaggactttcgattgtatgttcacatgttttttagcggccttcgataatcattcccagtgctcattggcaatgttttgaggccattatttaacgtacagactttgacacagaattacagattgacttggtagacattaatgttaacgagctacctcataatcttctaatttagagtgtattaattgaatgcataaaatctctgtaatcagagacttaacaaa
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|13 ): TTTAAAGTAGGTGTTCATGAAAATATGACAAAGGGTTTAAAATTGTCATTTTGATGTATATAATGAATTCTGAAAATAATAAAGATGTAGCTTTCTTCAGTAAGGAGATATCTTATAAAGATTAACAAATCTTTACAATCCATCGAACT
Unaligned ( gi|17 ): AGGAAGTGTTCATGAAAATATGACAAATGGTTTAAAGTATATAATGCTCTTTGAATATCATAGAGATATAGCTTCCTTCGGTAAGGACATATTTCATACGACAAACAAATCTTTACAATCC
Alignments
lowQualScore : 1111111111111111111111111111111111 1111111111111111111111111111111111111111111111111111111111 1111111111111111111111111111111111111111
lowQualScore : 111111 1 33333 111 3333333333333333333333333333333333 11 3333333 11 11 11 2222 111 1 11 111111 1 111 22 1 11111 111 111 11 88888888888888888 1111 2222 333333 33333333 1111111 333333333 222222222 2222222222222 22222222 11 1111111 2222222 11111 88888888888888888888888888888888888888888888888 1111111 1111111 11 55555555555555555555555555555555 11111111 0000000000000000000000000000000000000000000000000000000000 22222 11111 3333333333333333333333 111 111111 111 1 4444444444444444444 11 22222 11111 1111111 11111 11 11111 11111 111 1111 3333333333333333333333333333333333333333
lowQualScore : 99 6 666666 3 88888 6 99 111 6 6 6 6 99 6 0 4 6 99 0 7 99 6 4444444444444444444444444444444444 8 88 1111111 11 11 8 11 8 5 99 6 6 99 6 6 6 5555 6 5 5 000 6 6 6 2 6 6 00 444444 3 222 6 1 8 4 4 4 1 5 5 66 5 66 1 5 5 5 1 5 00 5 5 0 5 1 6 6 6 6 6 6 44444 999 444 6 111 3 5 5 5 00 22222222222222222 4444 6 1 2 6 6 2 6666 000000 6 1 7 6 6 77777777 5 5555555 6 99 333333333 5 555 44 1 999999999 0 77 77 5 777 7777 5 5555555555555 5 5 77777777 5555 5 22 2222222 5 777 5555555 4 4 4 33333 4 66 4 0 00 0 99 6 1 4 55555555555555555555555555555555555555555555555 5 999 5 1 66 5 999 5 5 6666 66 8888888 4 4444444 0 4 0 8 4 4 4 4 66 00 4 4 99999999999999999999999999999999 88888 00000000 55 8 66 1111111111111111111111111111111111111111111111111111111111 4 4 4 4 66 4 11111 555 00000 5 0000000000000000000000 5 66 0 5 000 5 666 666666 5 77 6 5 111 77 5 77 5 1 8888888888888888888 5 5 5 99 99 6 99 44 0 0 44 77777 66 5 22222 0 5 5 0000000 666 5 22222 66 888 11 5 66 5 1 4 11111 66 9999 5 5 22222 5 000 888 0000 7777777777777777777777777777777777777777 7 6 6 6
lowQualScore : .. . ...... . ..... . .. ... . . . . .. . . . . .. . . .. . .................................. . .. ....... .. .. . .. . . .. . . .. . . . .... . . . ... . . . . . . .. ...... . ... . . . . . . . . . .. . .. . . . . . . .. . . . . . . . . . . . ..... ... ... . ... . . . . .. ................. .... . . . . . . .... ...... . . . . . ........ . ....... . .. ......... . ... .. . ......... . .. .. . ... .... . ............. . . ........ .... . .. ....... . ... ....... . . . ..... . .. . . .. . .. . . . ............................................... . ... . . .. . ... . . .... .. ....... . ....... . . . . . . . . .. .. . . ................................ ..... ........ .. . .. .......................................................... . . . . .. . ..... ... ..... . ...................... . .. . . ... . ... ...... . .. . . ... .. . .. . . ................... . . . .. .. . .. .. . . .. ..... .. . ..... . . . ....... ... . ..... .. ... .. . .. . . . ..... .. .... . . ..... . ... ... .... ........................................ . . . .
lowQualScore : 22 7 222222 3 55555 7 88 777 7 7 7 7 22 7 7 8 7 22 7 3 22 7 2222222222222222222222222222222222 0 00 8888888 00 00 0 00 0 0 22 7 7 88 7 7 7 8888 7 7 7 000 6 7 7 0 7 7 33 333333 3 555 7 7 9 4 4 4 7 0 0 99 0 99 0 0 7 7 3 7 77 7 7 0 0 0 7 7 7 7 7 7 00000 222 000 7 777 2 7 7 7 77 66666666666666666 2222 7 7 5 7 7 5 7777 777777 7 0 3 7 7 99999999 0 3333333 7 22 333333333 7 999 66 4 444444444 7 99 99 7 333 7777 7 1111111111111 0 0 99999999 2222 0 55 8888888 0 111 6666666 4 4 4 22222 4 99 4 1 88 1 22 7 4 3 99999999999999999999999999999999999999999999999 0 333 7 4 77 7 444 7 7 7777 11 9999999 4 4444444 1 4 1 9 4 4 4 4 11 66 4 4 77777777777777777777777777777777 66666 77777777 66 9 11 2222222222222222222222222222222222222222222222222222222222 4 4 4 4 11 4 77777 333 88888 0 4444444444444444444444 0 99 2 0 000 7 111 444444 7 99 6 7 999 99 7 99 7 4 7777777777777777777 7 7 7 22 22 7 22 00 1 7 44 00000 99 0 55555 2 0 0 9999999 222 0 55555 11 888 99 6 99 0 9 4 11111 11 4444 0 0 55555 7 000 888 6666 7777777777777777777777777777777777777777 2 7 7 7
consensus : NNCATTACCTCCCT--GCT-AGGT----T-AT-CTCTTAGT-AGCAT-CTACCAGAGGT-C---A-GCA-CTG-ATGCTG-ACG--T-CGGTCGG-CCA--CGTTGC--ATTTT-GGCACG--------TT-TAC----------A-C--TCA-CT-CTTAGTA-CACAC----A--GTGAA--AATG--TCA-A--CATCAGAA-AGTGAACT--A-AATAATGAG-AC-AG-A-AC-TG----AA-GTATTT-GG-ATA---TNAGTTTGAA-CCA-GAGCTT-TAC-AGAGG-AAG-A----AA-TTG-T-TTCCC-AGAATTA-ATGCTT-CCT-CACCA-GAAACTGACT-TTAA-TG--AGA-GA--GGANTT-TCTCT-GG-ATTGTTGTGC-TTGTGAAAAAT-TGTTCAA-T-TT-TACCTACA-TTCAAG-GAG-TG-TC-TCTGTTGT-CATGAGT--TT-GACCATT-ATG---TTTTGG-ATT---ATATAAAC-ATGCACACAAAGTGCATT-TCTCTA-CA-TCCTGA----T------G---CACA----GTGTGTGT-CTAAGTCCTGT-TAT-CCTTGA---ACAGCTTG--TACATT-ATCTATCTCGGGTACAAAA-GC-CACAGAGG-A-TTC-GGAAGAGCCCCAGAGCACTTACAT--A--A-CAAGTA-AGA--AAAAC---------AC-AAAC-A-AAAGTGGAAAATAT----T-ATCTGC--TGT--A-TTTA-TCAAAA-T-CT-AAA------CA-TA-GCAT-GCCATTTG-TGTGT----A---AACATTTCCA-CA-TT-CACC-TATG-----TAATA-G--GACACATT-------TCTGTT-GC-A-GACA---A-TCAAG-ATTTATGGCT-TACA-CAGACAAATTCATTA--AT-TGGGTCAGACGTGGTCAGCCTCTG-G-----------GA----------G--T-------AG-T-AG-T--TACCCTCA--TGTGTTGTG-ACGGAAATAAGGAAAA-CATTTT--AT-GATGAA-GATG-ACAAA--TT-------AT-C-------AGACTC-GGA-A-TAA-GTA-ATC-TTTCA--AT--AGACA-AA-TGT-------T-ATTG-T-------A---------TCACC-A---AACATTAT--CAGTC-TAT-A--TGGTC--------C--A------------T------AT-------TAA-T-CA----------A-TGTA-T-A-AA--T-TGT-----ATGATAATAA-A-GC----AGTAC-T-T--AT--TAT-CT------T-AC-A--GCAATCTTGTT-TATTTCC---AA-ATA-T-TTAA------TA-CA--TGTA-TA-T-TCTAA--TTGA-T--T-GAATC-TTGAAATAT---GTG-TT-G-T-T-ACAT-TCA-GA-CATCT--TT--ATCG-TG--CACTAGC-CGTGTAACAGTGACCC-T---AGTCTCCAGCAGC--AA-TGT-----GGC-C-A-T-T---TA-C-GT-CAGA-----ACACAGA--TGCA---TG--CTGG--GA-ATTAAT-G-----GA--TAC----CCTCCATAAACCTTTCATTTAGAGTGT-TTAA-TTG-----ATGAAATCTCC-TA---AGAGA---A----ACA--------AACG-------------CT-------------TTTATTTTCAGAAGGCATTCTAAG-TTT-GCTGTGC-AAAAATAGTT
Reference ( family-366 ) : NNCATTACCTCCCT--GCT-AGGT----T-AT-CTCTTAGT-AGCAT-CTACCAGAGGT-C---A-GCA-CTG-ATGCTG-ACG--T-CGGTCGG-CCA--CGTTGC--ATTTT-GGCACG--------TT-TAC----------A----TCA-CT-CTTAGTA-CACAC----A--GTGAA--AATG--TCA-A--CATCAGAA-AGTGAACT--A-AATAATGAG-AC-AG-A-AC-TG----AA-GTATTT-GG-ATA---TNAGTTTGAA-CCA-GAGCTT-TAC-AGAGG-AAG-A----AA-TTG-T-TTCCC-AGAATTA-ATGCTT-CCT-CACCA-GAAACTGACT-TTAA-TG--AGA-GA--GGANTT-TCTCT-GG-ATTGTTGTGC-TTGTGAAAAAT-TGTTCAA-T-TT-TACCTACA-TTCAAG-GAG-TG-TC-TCTGTTGT-CATGAGT--TT-GACCATT-ATG---TTTTGG-ATT---ATATAAAC-ATGCACACAAAGTGCATT-TCTCTA-CA-CCCTG-----T------G---CACA----GTGTGTGT-CTAAGTCCTGT-TAT-CCTTGA---ACAGCTTG--TACATT-ATCTATCTCGGGTACAAAA-GC-CACAGAGG-A-TTC-GGAAGAGCCCCAGAGCACTTACAT--A--A-CAAGTA-AGA--AAAAC---------AC-AAAC-A-AAAGTGGAAAATAT----T-ATCTGC--TGT--A-TTTA-TCAAAA-T-CT-AAA------CA-TA-GCAT-GCCATTTG-TGTGT----A---AACATTTCCA-CA-TT-CACC-TATG-----TAATA-G--GACACATT-------TCTGTT-GC-A-GACA---A-TCAAG-ATTTATGGCT-TACA-CAGACAAATTCATTA--AT-TGGGTCAGACGTGGTCAGCCTCTG-G-----------GA----------G--T-------AG-TNAG-T--TACCCTCA--TGTGTTGTG-ACGGAAATAAGGAAAA-CATTTT--AT-GATGAA-GATG-ACAAA--TT-------AT-C-------AGACTC-GGA-A-TAA-GTA-ATC-TTTCA--AT--AGACA-AA-TGT-------T-ATTG-T-------A---------TCACC-A---AACATTAT--CAGTC-TAT-A--TGGTC--------C--A------------T------AT-------TAA-T-CA----------A-TGTA-T-A-AA--T-TGT-----ATGATAATAA-A-GC----AGTAC-T-T--AT--TAT-CT------T-AC-A--GCAATCTTGTT-TATTTCC---AA-ATA-T-TTAA------TA-CA--TGTA-TA-T-TCTAA--TTGA-T--T-GAATC-TTGAAATAT---GTG-TT-G-T-T-ACAT-TCA-GA-CATCT--TT--ATCG-TG--CACTAGC-CGTGTAACAGTGACCC-T---AGTCTCCAGCAGC--AA-TGT-----GGC-C-A-T-T---TA-C-GT-CAGA-----ACACAGA--TGCA---TG--CTGG--GA-ATTAAT-G-----GA--TAC----CCTCCATAAACCTTTCATTTAGAGTGT-TTAA-TTG-----ATGAAATCTCC-TA---AGAGA---A----ACA--------AAT--------------CT-------------TTTATTTTCAGAAGGCATTCTAAG-TTT-GCTGTGC-AAAAATAGTT
gi|1 : ATTACC--CCT--TCT-AGGT----TTATTCTCTTGG-----AT-CTCCCAGAGG--C---A-GCA-CTG-ATGCTGGACG--T-CA-TTGG-CCA--CATTGC---TTTT-G-CACA--------TT-----------------------CT-CTTAGTAACACAC-------GTGAA--AACG--TCA-A--CATCAGAA-AGTGAACCTAA-AATACTGAGGAC--G-A-AC-TG----AA-GTATTT-GG-ATACTATAAATTTGAATCCA-GAGTTTATAC--GAGG-AAG-A----AAATTG-T-TTTCC-AGAATTATATATTTTCCT-CACCA-GAAACTGACT-TTAA-TG--AGA--ATTGAAATT-TCTAT-GGAATTATTGAGCTTTGTT-AAAAT-TGTTCAA-T-TTATACC-ACATTTCAAGAAAG-TG-TTATCTGTTGTCCATGAGT--TT-AACCATTGATG---TTTTGG-A-T---AGATAGAC-ATACACACAAAG-GTATT-TCTGTAGCA-TCCTGACGTTT------G----ACAACGTGTGTGTGT-CT-AGTCCTGTGCAG-C--TG----ACAGC------ACATTAATCTATCTCCGG-ACAAAA-GC-CACAGAGG-A-TTCGGGAAGAGCCCCAGAGCACTCACATTCAGTA-GAGGCA-TGACGAAAACGAAATGAGAACTAGAC-ATAAAGAAGAA---AT----TGATCTGC--TGCTGA-TTTA-TCAAAATT-CTAAAA------CA-T---TAT-G-CACTTGTTGTGTTTCAA---AACATGTCCA-CAGTT-CACC-TA-GTCAATTAATG-G--AACACATT-------TCTGTT-GC-A-GACA---A-TCAAG-AATTATGGCT-TACA-CAGACCAATTCA-TA--ATGTGCGT-AGATGTGGTCA-CCTCTG-GGGAAAATTCAAGA----------G--T-------AG-TGAA-T--TACTC-------TGTTGTG-ATG--AATAATGAAAA-CATTTT--TTAGATGAA-GATG-A-AAA--TT-------AT-C-------AGACTC-GGA-A-TAA--TA-ATCTTTTCA--AT--AGACA-AA-TGTTATGTA-T-ATTG-C-------A---------TCACC-A---AACATCA----GGTCTTAT-GATTGGTT--------C--A------------TGAAA--ATTAA----TAA-T-CA----------ATTGTA-T-A-AA--T-TGTA----ATGATAATAA-ACGC----AGTAC-T-----T--TATACT------T-ACTA--GCAATCTTGTTCTATTTTCACAAA-GTA-T-TTAA------TA-CA--TGTATTATT-TCTAA--TTGATT--T-GAATC-TTGAAA-AT---GTG----G-T-TAACAT-TCA-GA-CATCT--TT--AT-G-TT--CGC--GC-CG------AGT------------TCTCCAGCAGC--AA-TGT-----GGC-C-A-A-T---TA-C-GT-CAGA-----ACACAGA--TGCA---TGA-CT-G--GA-AT--ATGG-----GA--TAC----CTCCCATAAACCTTTC-TTTAGAGTGT-TTAATTTG-----ATGAAATCT-C-TA---AGTGA---ACACTACA--------AACAGTTTAGGCCATCACTA------------TTTA-TTTCAGAAGGCATTCTAAGTTTT-GCTGTGC-AAAA
gi|10 : gtattaagaagtgttcatgaaaatctatgacaagggtttaaaattgtcattttgaatgtaatatgattttgaaaaccatacgatgtgctttccccgtcaaggagatttttcataaagatctaactaattgtacaatccatggagctgccatattgataaattaATTACCTCCCT--GCT-AGGT----T-AT-CTCT-----AGCAT-CTACCAGAGGT-C---A-GCA-CTGTATGCTG-ACG--T-CAGTTGGGCCA--CAT-GC--ATTTTTGGCACA--------TT-----------------------CT-CTTAGTA--ACAC----AATGTGAA--AATG--TCA-A--CATCAGAA-A-TGAACT--A-AATAATGAG-AC-CGAA-AC-TG----AA-GTATTT-GG-ATA---TGAATTTGAA-CCA-GAGTTT-TAC-AGAGA-AGGAA----AA-TAG-T-TTCC---AAATTA-GTGTTT-CCT-CACCA-GAAACTGgaataagttatttctatgaacacttcc
gi|11 : taaaggaagtgttctgaaaatatgaacaaaggtttttaaaattgttcatttgatgtatataatgaattttgaaaatcatacaagatgtagctttcttcagtaaggagatatttcataaagattaactaatttttacaatccatggaagctgccatatgaataaaatC-AT-CACACAAAGTGTATT-TCTCTA-CA-TCCTG-----------------AC------------T-TTGA------------CCTTGA----CAGCTTA-----ATT-A-CTATCTCG--TACAAAAAGCTCACAGAGG-AATTC-GGAAGAGCCCCAGAGCACTTACAT--C--A-GAAGTATAAA--AAAACC--------AC-AAA-----------------T----T-ATCTGCCTTGT--A-TT-A-TCAACA-TTCT-AAA------CA-TAAGCAT-TCCATTTG-TGTTT----ACA-AACATTTTCAACA-TT-CACA-TA-G-----TAATT-G--GATACATT-------TCTGTTTGC-AAGACC---A-TCA-G-ATTTATGGCT-TACA-CA-ACAAA-TCAT
gi|12 : -ATGCTT-CCT-GACCA-GCAACTGACT-TTAA-TG--AGA-GA--GTAATT-TCTAT-GG-ATTGGTATGG-TTGT-AAATAT-TGTTCAA-T-TT-TACCTACA-TTCAAG-GAG-TG-TC-TCTGTTGT-CATGAGT---------------------------TT---ATATAAAC-ATGCACACAAAGTGTATT-TCTCTA-CA-TCCTGAC---T------GTGACACA----GTGTGTGT-CTAAGTCCTGT-TAT-CCTTGAAACACAGCTAGCTTACATT-ATCTATCTCAGGTACGAAA-GC-CAGAGAGG-aac
gi|14 : gT--A--A-CAAGTA-AGT--AAAAC---------AC-AAAC-A-AAAATGAAAAATAT-----------C--TGT--G-TTCA-T-----------AAA--------------AT-GCCAATTG-TGTGT----A---AACATTTCCA-CG-CA-TACC-TATG-----TGATA-G--AACACAAT-------TCTGTT-TG-A-TACA---A-TCAAG-AGTTATGGCG-T--A-CAGAT-AATTCATcagaacactt
gi|15 : ATTACCTCCCT--GCT-GGGT----T-AT-CTCC---T-AGCAT-CTAGAAGACAG-C---A-GCA-CTA-ATGTTG-ACG--T-CAGTAAG-AAA--CG-TAT--ATTTT-GGCACG--------
gi|16 : tctttcaatccttgggagctgccatattgataaattgTAAT-G-----GA--TAC----CCTCCATAAACCTTTCAATTAG--TGT-TTAA-TTG-----ATGAAATCTCT-TA---AGAGA---A----ACATAGTTTTTAGC--------------CTCACTA--------TTTATTTTCAGAAGGCATTCTAAG-TTT-GCTGTGC-AAAAATATTTgtgaacagtatcaacgcttatta
gi|18 : A--TT-------AT-C-------AGACTC-G-A-A-TAA-G---A-C-TTTCA--TT--AAAC-------------------TG-C-------A---------TCACC-ATCAAACAT-----CAGTC-TATCA--TGGTC--------C--AATTTGAACAGAAT------AT---------A-T-CA----------A-TGTA-T-A-AA--TATGT-----ATGATAATAA-A-ttttcatgaacacttc
gi|19 : AAA--TGCT---TA--TTTG--AA-AT-AAT-G-----GA--TTG----CCTCCATAAAACTTTCACTTGGAGTCT-TTGA-TTG-----ATCATATCTTG-TA---ATAGA---A----ACA--------Ac
gi|2 : tTTACCTCCCT--GCCGAGGTCTTAT-ATACTCCTCGTGAATCT-CTACCAGAGGT-CGCGA-GCA------TGTTC-AGGATT-GGGTCAA-CCATTCGTTGCTTAGTTT-GGTACGCATTGTTATT-TACCACGGAGACTACCTTTCA-CTTCTTGCCA-CCCACTCTAG--GTGGATAAATG--TCACA--CATCACAG-ATTGAACT--A-AATAATGAA-ACGAG-A-AC-TGCAT-AG-GTATTT-GA-ATA---T-AGTTTGA--CCACGAG-TT-TAC-AGAGGCAAG-GGCAGAA-TTGATGTTCCC-AGGATTC-ATGCTT-CTTACGCAA-GAAA-TGACT-TTAAATG--AGATGA--GGATCT-TTTCT-GG-ATTGTTGTGC-TTGTTGGAAATGTTTTCAA-T-TT-TACCTA-A-TTCAAG-GAT-TA-TT-TCTGTTGT-CATGAGTCCTTGGACCA-T-ATGGTTTTTTGG-ATT---ATATAAAC-ATG-ACACAAAGTGCATTATCCCTA-CATCCCTG-----TTACTTGA---CACA----GTGTGTGTACTAAGTCCT-T-TATCCCTTGG---ACTAC--G--TACATT-ATCTATCTCGAA-ACAAAA-GC-CAC-GAGG-A-----AGGGGAGTCCCAGA-CACTTACAT--A--AGCAAGTA-AGA--AACAC---------AC-AACCAA-AAAGTGGAAAA-AA----T-ATCTGC--TGT--A-TT---TCAAAT-T-CT-AAAACTTAGCAGTG-GCAT-GCTATTT--TGTGT----ACGTAACATTTCCA-CA-TT-CACCGCATT-----CAATG-GGAGACACATT-------TCTGTT-GCAA-GACA---G-TCAAACGTTTATGGCCGCACATCAGACAAATTC--------------TAGATGTGGTCAGCCTCTG-G-----------GG----------GAAT-------AATTCAGAT--TACCCTCAATTGTGTTGTG-ACTGAAATAAGGAAAA--ATTTTGGAT-AATGAA-GATG-ACAAA--TT-------AC-C-------CAACTCTGGACA-TAA-GTA-ATC-TTTCA--AT--AGACA-AA-TGTTAATGAAT-ATTG-T-------AG--------TCACT-C---AACATTATTCCAGTC-TAT-A--TGGTC--------C--A-------------------AT-------TGGTT-CACTGCAACAACA-TGTA-T-ATAG--T-TTTACATAATGATAATAAGA-GC----AGTAC-T-TTAAT--TAT-AT------TGAC-A--GCAATCTTGAT-TTTCTCC---AAGATA-A-TTAA------TA-CAATTGTA-TATT-TCTAA--TGCA-T--TGGAACCTTTGAAATAT---A-G-CT-GCT-T-AAATCTCAGGA-CATC---TT--A-CGTTG--CCGTAACGCGTGTAACAG-GACCC-TGAAACTCTCCAGCAGCTAAA-T-T-----GAC-C-A-TCT---TA-CTGT-CAGA-----A-ACAAG--TGgcaaattggctttag
gi|20 : acaatccatgggagtgaggctcgcatcatctttagataacaattaatGA---A----ACA--------AGTGCAACA--------CA-------------TTTATTTTCATCAGCC-TTCTAAG-TTTTGCTGTGCAAAAAATAGT
gi|21 : -GG-ATA---TCAGTTCAAA-TCT-GAGCTT-TAC-AGAGA-AAA-A----AA-TCG---TTCTC-AT-ACTG-ATGCTT-CTT-CACCA-ACAATTGA-T-TTAA-CG--AAA-GG--GGGATT-Tctttttcatgacacttcctttaacgaaattgtct
gi|22 : -ATGCTC-TCC-CACCA-GCGACTGACT-TTAA-TG--AGA-GA--GGACTT-TCTCG-GG-ATTCGTGTGC-TTGTG-AAAAT-TGTTCAA-TGTC-TACt
gi|23 : -ATGCTT-TCC-CACCA-GCGACTGACT-TTAA-TG---GA-GA--GGACTT-TCTCG-GG-ATTCGTGTGC-TTGTG-AAAAT-TGTTCAA-TGTC-TACtc
gi|24 : --------------CT-------------ATTATTTTCAGAAGGCATTCTAAG--TT-G-TGTGC-AAAAATATTTtc
gi|25 : cataaacagtttttcaagcctcaa-TT-AACCTACA-TTCAAG-GAG-TG-TT-TTTGTTGT-TATGAGT--TT-GAATATT-ATtttttcatgaacact
gi|26 : ACT--A-AATAGTGAG-AC-AG-A-AG-TA----CATGTATTT-GG-ATA---CCAG
gi|27 : ATT-------TCTGTT-GC-A-GACA---A-TCAAG-ATTTATGGCC-CACA-CAGACaa
gi|3 : CATTACCTCCCT--GCT-AGGC----T-AT-CTCTTAATTAACAT-CTACCAGAGGT-C---A-GCA-CTG-ATGCTG-ACG--T-CAGTTGG-TCA--CATTGC--ATTTT-GGCACA--------TTATAC----------AGCA-TCAACT-CTTATTA--ACAC----A--GTGAC--AATG--TCA-A--CATCAGAA-AGTGGACT--A-AATAATGAG-AC-AG-A-AC-TG----AA-GTATTT-GG-ATA---TCAGTATGAA-CCA-GAG-TT-TAC-AGAGG-AAG-A----AA-TTG-T-TTCCC-AGAATTATATGCTT-CCT-CATCA-GAAACTGACT-TTAA-TG--AGA-GA--GGACTT-TCTCT-GG-ATTGTTGTGC-TTGTGAAAAAT-TGTTCAA-T-TT-TACCTATA-TTCAAG-GAG-TG-GC-TCTGTTGT-CATGAGT--TT-GACCATT-ATG---TTTTGG-ATT---ATATAAAC-ATGCACACAAAGTGCATT-TCTCTA--------------------------ACA----GCGTGTGT-TTAAGTCCTGT-TAT-ACTTGAT--ACAGCTTA--TACATT-ATCTATCTTGGGTACAAAA-CC-CAGAAAGGAA-TT----AAGAGCTCCATAGCACTTACAT--A--A-CAAGTA-AGA--AAAAC---------AC-AAAC-A-AAAGTGGAAAACATACAGT-ATCTGC--TGT--A-TTTA-TCAAAA-T-CA-AAA------CA-TA-GCAA-GCCATTTG-TGTGT----A---AACATTTCCA-CA-TT-CACCTTATG-----TAATA-G------CATT-------TCTGCT-GC-G-GACA---T-TCAAG-ATTTATGGCT-TACA-CAGACAAATTCATTAATAT-TGGGTCAGATGTGGTCA--------------------GA----------G--T-------AG-TTA-----TACCCTCA--TGTGTTGTG-ATGGAAATAAAGAAAA-CATTTT--AT-GATGAA-GATG-ACAAA--TT-------AT-C-------AGACTC-CGA-A-TAA-GTT-ATC-TTTCA--AT--AGACA-AA-CGT-------T-ATTG-T-------A---------TCACC-A---AACATTAT--CAGTC-TAT-A--TGGTC--------C--A-------------------A--------TAA-T-CA----------G-TGTA-T-A-AA--T-TGT-----ATGATAATAA-A-GA----AGTAC-T-T--AT--TAT-CT------T-AC-A--GCAATCTTGTT-TATTTCC---AA-ATA-T-TTAA------TA-CA--TGTA-TA-T-TCTAA--TTGA-T--T-GAATC-TTGAAATAT---GTG-TTAA-T-TAACAT-TCA-GA-CATCT--TT--ATCG-TG--CACTAAC-TGTGTAACAGTGACCC-TG--AGTCTCTAGCAGC--AA-TGT-----GAC-C-ATT-T---TA-C-GT-CAGA-----ACACATA--TGTA---TG--CTGG--GA-ATTAAT-G-----GA--TAC----CCTCCATAAACCTTTCATTTAGAGTGT-TTAA-TTG-----ATGAAATCTCC-TA---TGAGA---A----ACA--------AA--------------------------------TATTTTCAGAAGTCCTTCTAAG-TTT-GCTGTGC--AAGATAGTT
gi|4 : atTGA-ATT---TTATAAAC-ATGCACACAAAGTACGTT-TCTC---CA-TCCTGATTT-T------GA--CACA----GTATGTGT-CTAAGTCCTGT-TAT-CATAGAG--ACAGCTTG----CATT-ATCTATATCGGGTATAAAA-GC-CACAGAG-----------------------CACTTACGT--A--T-CAAGTA-AGA--AAAAC---------AC-AAAC-A-AAAGGTGAAAATAT------ATCTGC--TGT--A-TTTA-TCAAAT-T-CT-AAA------CA-TA-GCAT-GTCATTTG-TGTGT----A---AACATTTTCA-CA-TT-CACC-TATG-----TAATA-G--GACACATT-------TCTGTT-GC-A-GACA---A-TCAAG-ATTTATGGAT-TACA-CAGAAAGAATCATTA--AT-TGGGTCAGATGCGGTCAGCCTCTG-G-----------GG----------G---------------AA-A--TACCCTCA--TGTGTTGTG-ATGCAAATAAGGAACA-CCTTTT--AT-GATGAA-GATG-AACAA--TT-------AT-C-------AGATTC-GAA-A-TAA-GTA-ATC-TTTCA--AT--AGACA-AA-TGT-------T-ATTG-TATATTGCA---------TCACC-A---AATATTAT--CAGTC-TAT-A--TGGTC--------C--AAT----------T------GTTCATCAATAA-T-CA----------A-TGTA-T-A-AA--T-TGT-----ATGATAATAA-A-GC----AGTAC-T-T--TA--TAT-CTATATGAT-AC-A--GTAATCTTGTT-CATTTCC---AA-ATA-T-TTAATATATGTA-CG--TGTA-TA-T-TCTAA--TTGA-T--T-GAATC-TTGAAATAT---GTG-TT-A-----ACAT-TCA-GA-CATCT--TT--ATCG-TG--CACTAGC-TGTGTAACAGTGACCCTT---AGTCTCCAGCAGC--AA-TGT-----GGC-CAA-T-T---TA-C-GT-CTGA-----ACACAGA--TGCA---TG--CTGG--GA-ATTAAT-G-----GA--TAC----CCTCCATAAACCTTTCATTCAGAGTGT-TTAA-TTG-----ATGAAATCTCC-TC---AGAGA---A----ACA--------AACAAG-----------CTTTTAGCCTCACTATTTATTTTCAGAAGGCCTTCGAAG-TTT-GCTGTGC-AAAAATAGTT
gi|5 : CATTACCTTCCTTTGCT-AGGT----A-TT-TTCTTAG---GCATTCTACACGAGGTGC---AAGCAACTG-ATGCTG-ACG--TATGGTTTG-CCA--TAT--C--ATTT--GGCACA--------TTCTAC------------------------TAGTA-CACAC----A--GTGAA--AATAGCTCA-ATGCATCAGAACAGTGAACT--AGAATAACGAG-AC-AG-ATACGTGTAGTGA-GTATTTTGGCATA---TGAATTTGAA-CCA-GAGCTT-TACCAGAG--AAG-A----AACTTG-T-TCCCCGAGAATTA-GTG--T-CCT-TACCATGAAACTGACTGTTAA-TGTCAGA-GA--GAATTTGTCTCTTGG-ATTGTTGAGC-TTGTAAAAAAT-TGTTCAAAT-TT-TACCTACA-TTCAAG-AAGGTGCTC-TCTGTTGT-CATGATA--GT-GACCCAT-AAG---TTTTGGCATTCAGA-ATAAGCCATGCACACAAAGTGTATT-TCTCTA-CA-TCCTG-----ttttcatgaacactaccttta
gi|6 : attaaaggaagtgttcatgaaaatatgttatacaacttagggcctttaaatatgtcgtcatttttgcatttgtatattaatgaatttttgataatcattacaagtagctttcctccagtaataatatctatgaaagattagtagctaattttacaattccatggaaagctccatattgataataagAT-GCCATTTG-TGTGT----A---AACATTTCAA--A-TAACACA-AACA-----TGATA-G--GGTATAGTAACAA--T-TAAT-GC-A-GACATGCACTCAAC-ATTTATGGC---ATA-AAGACAG-TTTATCA--AC-TGGGTCAGACGAGGTCAGCATCTT-A-----------GA----------G--TGAGCTAGAG-T-AG-TTCTACTCTCA------TTGTG-ACAAAAGTTAGAGAGG-CATTTC--CT-GATGAATGCTG--C-AA--TT--------T-C-------TGAAT------A-TAATGTATTTT-TTTCAGTAT--AAATA-AACTGTA------A-ATTG-C-------A---------TCACC-A---AA-ATT-C--CTGT--TAA-A-----TC--------C--A------------T------GT--------------A----------C-TGTACT-A-CA--T-CA------ATCATAATCA-A-AC------------T--GT--TAT-AT------G-AC-ACGGTGACC-----------CC---AA-TTA-TATTCA------CACCA--TATA-AA-A-TC-AG--TTGA-TTAT-GAATC-CTGAAATATACAGTGCTT-G-TGT-ACAT-TGA-GA-acttttgaactcagtgcgagtgt
gi|6 : TGCAA-AGTAACCC-----AGTTACCAACAGC--AA-TGT-----GTCTC-A-T-C---TA-C-AT-CAAA-----GCACAGT--TGCA---TG--CTGG--GA-AATAAT-G-----GA--TGCATGACCTTCATAAACCTTTCATTTAGAagttggaggagctcatgcaagagatttttttcttccttgatggtgcattgtttcaattctttcaatttgcacaaaaaccttatccatgaattctaatataaatccattatcttctgctgcaaagtaacccagttaccaacagcaatgtgtctcatctacatcaaagcacagttgcatgctgggaaataatggatgcatgaccttcataaacctttcatttaga
gi|7 : atgccatttgtgtgtaaacatttcaaataacacaaacatgatagggtatagtaacaattaatgcagacatgcactcaacatttatggcataaagacagtttatcaactgggtcagacgaggtcagcatcttagagtgagctagagtagttctactctcattgtgacaaaagttagagaggcatttcctgatgaatgctgcaatttctgaatataatgtatttttttcagtataaataaactgtaaattgcatcaccaaaattcctgttaaatccatgtactgtactacatcaatcataatcaaactgttatatgacacggtgaccccaattatattcacaccatataaaatcagttgattatgaatcctgaaatatacagtgcttgtgtacattgagaagttggaggagctcatgcaagagatttttttcttccttgatggtgcattgtttcaattctttcaatttgcacaaaaaccttatccatgaattctaatataaatccattatcttctgcC-AAAC-A-AAA-TGGAAAAT------T-AT-TGC--TGT--AATTTAATCAAAA-T-TT-AAA------CA--A-TCATTGCAATTTG-TGTGTTTACA---AACATT--CA-C--TT-CAC--TATG-----TACTACG--GACACATTGTACATTTCTGTT-GC-A-GACA-----TCAAG-ATGTATGGCT-TACA--AGACAATTTCATTA--AT-TGGGTCAGATGTGGTCAGCCTCTG-G-----------GAAAATTCAGATG--T-------AG-TCAG-T--TACTC-----TGTGTTGTGCATGG-ATTAAGGAAAA-CATTTT--AT-GATGAA-GATGAACAAAATTT-------AT-C-------AGACTC-AGA-ATTAA-GTA-ATC-TTTC---AT--AGACA-AA-TGT-------T-ATTG-T-------ATAATTGCAGTCACCTC---AAC---AT--CAGTC-TAT-A--TGGT---------C--A------------TTGAAAAATTA-----TAA-TACC----------A-TG-A-TAA-AA--T-TGTTA---ATGATAATAA------------GC-T-T--A-----------------AC-A--GCAAT-TTGTT-TATTTCC----A-ATATT-TTAA------TA-CA--T-TA-TA-TATTTAATTTTAA-T--T-GAATCTTTGAAA-------------------------CA-GACCATCT--TTAAATCG-TGGCCACTAGCTTGCGTAAC-------------AGTCTCCAGCAGC--AATTGT-----GGC-C-A-T-T---TA---GT-CAGA-----ACACAAA--TGCA---TG--CT-G--GA-ATTAAT-G-----GA--TA-----GCTCCAT-ACCCTTTCATTTAGAGTGC-TTAA-TTG------TGAAATCT
gi|8 : GGGTCAGACCTAGTCGGCCTCTGCG-----------GA----------A--A-------A-----------AACCTCA--TGTGTTGTG-ATGAAAATAAGGGAAATCATTTC--CC-GATGAA-GATG-GCAAA--TTCGGAGGAAT-TTTCTAATAGAATC-GGA-A-TAA-GTA-ATC-TTTCA--GTGCAAACA-AT-TGT-------T-ATCG-T-------AAATTGAT--TTACC-A---AAATTTAT--CAGTC-TAC-A--TGCTC--------C--A------------T------GTATATCTATAA-T-CA----------A-TGTA-T-A-AA--T-TGT-----ATGACAATAC-A-GC----AGTATGT-T--ATAATAT-CT------T-TT-A--GCAATCTTGTT-TATTTCG---AG-ACA-T-CTAA------TA-CA--T-----A-T-TCTAA--CTGA-T--T-------TTG-----T---GTT-TT-G-----GCAT-TCA-GG-CATCTCTTT--ATCA-TG--CACTAAT-TATGTAACAGTGACCC-A---AA-CTACAGCAGC--AA-TGA-----GTC-T-AAT-T---TA-C-GT-CAGA-----ACACAGA--TGCA---TG--CTGG--GA-ATTCAT-G-----GA---AC----CTTCCATAAACC-------------GT-TTAA-TTG-----ATGACATTTCC-TA---GGAGA---A----ACG--------AA
gi|9 : AAA--TTT------ATAC-------AGGACC-GGAGA-TAA-GTA-ATC-TTTCA--ATA-AGACATAA-TGT-------TAATTGATACATGCGA---------TCACC-A---AAC---AT--CAGT--TATAA--TGGTCAATTTTGACGAA------------T------ATAA-----TAA-T-CA----------A-TGTA-T-G-AAGGT-TGT-----AT-ATAATCA-A-CCTTAGAGTCC-TCT--AT--T--------------C-A--G-----TTCTT-TATTTCcaaacaagttcttagccacacttttaatttttagaagacctagtttttcatcctaaagtgtttttttttcatgaacacttaatttagtttttgt
gi|9 : aaCC-C---AGTGCTCATTGGC--AA-TGTTTTGAGGC-C-A-T-TATTTAAC-GTACAGACTTTGACACAGAATTACAGATTGACTTGGTAGACATTAAT-GTTAACGAGCTAC----CT--CATAATCTTCTAATTTAGAGTGTATTAA-TTGAATGCATAAAATCTCTGTAATCAGAGACTTA----ACA--------AAtgattagggcagccctatcttgtgttatccattaatccaaatagttctttccccaagataattttatacattggggcatgagtagtattcttgaaatatgtcatcatggtgtgaacaaatttcaagaggcggattctcttttcgtgtcatctaggactttcgattgtatgttcacatgttttttagcggccttcgataatcattcccagtgctcattggcaatgttttgaggccattatttaacgtacagactttgacacagaattacagattgacttggtagacattaatgttaacgagctacctcataatcttctaatttagagtgtattaattgaatgcataaaatctctgtaatcagagacttaacaaa
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|13 ): TTTAAAGTAGGTGTTCATGAAAATATGACAAAGGGTTTAAAATTGTCATTTTGATGTATATAATGAATTCTGAAAATAATAAAGATGTAGCTTTCTTCAGTAAGGAGATATCTTATAAAGATTAACAAATCTTTACAATCCATCGAACT
Unaligned ( gi|17 ): AGGAAGTGTTCATGAAAATATGACAAATGGTTTAAAGTATATAATGCTCTTTGAATATCATAGAGATATAGCTTCCTTCGGTAAGGACATATTTCATACGACAAACAAATCTTTACAATCC
Alignments
lowQualScore : 11111111111111111111111111111111111 11111111111111111111111111111111111111111111111 1111111111111111111111111111111111111111111111111111111111 111111111111111111111111111111111111111111111111
lowQualScore : 111111 1 33333 111 33333333333333333333333333333333333 11 3333333 11 11 11 2222 111 1 11 111111 1 111 22 1 111 111 6666666666666666666666666 1111 2222 333333 33333333 1111111 333333333 222222222 2222222222222 22222222 11 1111111 2222222 11111 00000000000000000000000000000000000000000000000 1111111 1111111 11 55555555555555555555555555555555 11111111 0000000000000000000000000000000000000000000000000000000000 22222 11111 3333333333333333333333 111 111111 111 1 4444444444444444444 11 22222 11111 1111111 11111 11 11111 11111 111 1111 000000000000000000000000000000000000000000000000 111
lowQualScore : 99 6 666666 3 88888 6 99 111 6 6 6 6 99 6 0 4 6 99 0 7 99 6 88888888888888888888888888888888888 8 88 1111111 11 11 8 11 8 5 99 6 6 99 6 6 6 5555 6 5 5 000 6 6 6 2 6 6 00 444444 3 222 6 1 8 4 4 4 1 5 5 66 5 66 1 5 5 5 1 5 00 5 5 0 5 1 6 6 6 6 6 6 99 77 999 444 6 3 111 3 5 5 5 6666666666666666666666666 4444 6 3 6 6 6 2 6666 000000 6 1 7 6 6 77777777 5 5555555 6 99 333333333 5 555 44 1 999999999 0 77 77 5 777 7777 5 5555555555555 5 5 77777777 5555 5 22 2222222 5 777 5555555 4 4 4 33333 4 66 4 0 00 0 99 6 1 00000000000000000000000000000000000000000000000 5 999 5 1 66 5 999 5 5 6666 66 8888888 4 4444444 0 4 0 8 4 4 4 4 66 00 4 4 99999999999999999999999999999999 88888 00000000 55 8 66 1111111111111111111111111111111111111111111111111111111111 4 4 4 4 66 4 11111 555 00000 5 0000000000000000000000 5 66 0 5 000 5 666 666666 5 77 6 5 111 77 5 77 5 1 8888888888888888888 5 5 5 99 99 6 99 44 0 0 44 77777 66 5 22222 0 5 5 0000000 666 5 22222 66 888 11 5 66 5 1 4 11111 66 9999 5 5 22222 5 000 888 0000 333333333333333333333333333333333333333333333333 111 7 6 6 6
lowQualScore : .. . ...... . ..... . .. ... . . . . .. . . . . .. . . .. . ................................... . .. ....... .. .. . .. . . .. . . .. . . . .... . . . ... . . . . . . .. ...... . ... . . . . . . . . . .. . .. . . . . . . .. . . . . . . . . . . . .. .. ... ... . . ... . . . . ......................... .... . . . . . . .... ...... . . . . . ........ . ....... . .. ......... . ... .. . ......... . .. .. . ... .... . ............. . . ........ .... . .. ....... . ... ....... . . . ..... . .. . . .. . .. . . ............................................... . ... . . .. . ... . . .... .. ....... . ....... . . . . . . . . .. .. . . ................................ ..... ........ .. . .. .......................................................... . . . . .. . ..... ... ..... . ...................... . .. . . ... . ... ...... . .. . . ... .. . .. . . ................... . . . .. .. . .. .. . . .. ..... .. . ..... . . . ....... ... . ..... .. ... .. . .. . . . ..... .. .... . . ..... . ... ... .... ................................................ ... . . . .
lowQualScore : 22 7 222222 3 55555 7 88 777 7 7 7 7 22 7 7 8 7 22 7 3 22 7 22222222222222222222222222222222222 0 00 8888888 00 00 0 00 0 0 22 7 7 88 7 7 7 8888 7 7 7 000 6 7 7 0 7 7 33 333333 3 555 7 7 9 4 4 4 7 0 0 99 0 99 0 0 7 7 3 7 77 7 7 0 0 0 7 7 7 7 7 7 22 77 222 000 7 2 777 2 7 7 7 4444444444444444444444444 2222 7 2 7 7 7 5 7777 777777 7 0 3 7 7 99999999 0 3333333 7 22 333333333 7 999 66 4 444444444 7 99 99 7 333 7777 7 1111111111111 0 0 99999999 2222 0 55 8888888 0 111 6666666 4 4 4 22222 4 99 4 1 88 1 22 7 4 11111111111111111111111111111111111111111111111 0 333 7 4 77 7 444 7 7 7777 11 9999999 4 4444444 1 4 1 9 4 4 4 4 11 66 4 4 77777777777777777777777777777777 66666 77777777 66 9 11 2222222222222222222222222222222222222222222222222222222222 4 4 4 4 11 4 77777 333 88888 0 4444444444444444444444 0 99 2 0 000 7 111 444444 7 99 6 7 999 99 7 99 7 4 7777777777777777777 7 7 7 22 22 7 22 00 1 7 44 00000 99 0 55555 2 0 0 9999999 222 0 55555 11 888 99 6 99 0 9 4 11111 11 4444 0 0 55555 7 000 888 6666 222222222222222222222222222222222222222222222222 777 2 7 7 7
consensus : NNCATTACCTCCCT--GCT-AGGT----T-AT-CTCTTAGT-AGCAT-CTACCAGAGGT-C---A-GCA-CTG-ATGCTG-ACG--T-CGGTCGG-CCA--CGTTGC--ATTTT-GGCACG--------TT-TAC----------A-C---TCA-CT-CTTAGTA-CACAC----A--GTGAA--AATG--TCA-A--CATCAGAA-AGTGAACT--A-AATAATGAG-AC-AG-A-AC-TG----AA-GTATTT-GG-ATA---TNAGTTTGAA-CCA-GAGCTT-TAC-AGAGG-AAG-A----AA-TTG-T-TTCCC-AGAATTA-ATGCTT-CCT-CACCA-GAAACTGACT-TTAA-TG--AGA-GA--GGANTT-TCTCT-GG-ATTGTTGTGC-TTGTGAAAAAT-TGTTCAA-T-TT-TACCTACA-TTCAAG-GAG-TG-TC-TCTGTTGT-CATGAGT--TT-GACCATT-ATG---TTTTGG-ATT---ATATAAAC-ATGCACACAAAGTGCATT-TCTCTA-CATCC--------TGA-C----G---C---ACA----GTGTGTGT-CTAAGTCCTGT-TAT-CCTTGA---ACAGCTTG--TACATT-ATCTATCTCGGGTACAAAA-GC-CACAGAGG-A-TTC-GGAAGAGCCCCAGAGCACTTACAT--A--A-CAAGTA-AGA--AAAAC---------AC-AAAC-A-AAAGTGGAAAATAT----T-ATCTGC--TGT--A-TTTA-TCAAAA-T-CT-AAA------CA-TA-GCAT-GCCATTTG-TGTGT----A---AACATTTCCA-CA-TT-CACC-TATG-----TAATA-G--GACACATT-------TCTGTT-GC-A-GACA---A-TCAAG-ATTTATGGCT-TACA-CAGACAAATTCATTA--AT-TGGGTCAGACGTGGTCAGCCTCTG-G-----------GA----------G--T-------AGT--AG-T--TACCCTCA--TGTGTTGTG-ACGGAAATAAGGAAAA-CATTTT--AT-GATGAA-GATG-ACAAA--TT-------AT-C-------AGACTC-GGA-A-TAA-GTA-ATC-TTTCA--AT--AGACA-AA-TGT-------T-ATTG-T-------A---------TCACC-A---AACATTAT--CAGTC-TAT-A--TGGTC--------C--A------------T------AT-------TAA-T-CA----------A-TGTA-T-A-AA--T-TGT-----ATGATAATAA-A-GC----AGTAC-T-T--AT--TAT-CT------T-AC-A--GCAATCTTGTT-TATTTCC---AA-ATA-T-TTAA------TA-CA--TGTA-TA-T-TCTAA--TTGA-T--T-GAATC-TTGAAATAT---GTG-TT-G-T-T-ACAT-TCA-GA-CATCT--TT--ATCG-TG--CACTAGC-CGTGTAACAGTGACCC-T---AGTCTCCAGCAGC--AA-TGT-----GGC-C-A-T-T---TA-C-GT-CAGA-----ACACAGA--TGCA---TG--CTGG--GA-ATTAAT-G-----GA--TAC----CCTCCATAAACCTTTCATTTAGAGTGT-TTAA-TTG-----ATGAAATCTCC-TA---AGAGA---A----ACAA-----A-----------C--ACT-------------TT----------TAT---TTTCAGAAGGCATTCTAAG-TTT-GCTGTGC-AAAAATAGTT
Reference ( family-366 ) : NNCATTACCTCCCT--GCT-AGGT----T-AT-CTCTTAGT-AGCAT-CTACCAGAGGT-C---A-GCA-CTG-ATGCTG-ACG--T-CGGTCGG-CCA--CGTTGC--ATTTT-GGCACG--------TT-TAC----------A-C---TCA-CT-CTTAGTA-CACAC----A--GTGAA--AATG--TCA-A--CATCAGAA-AGTGAACT--A-AATAATGAG-AC-AG-A-AC-TG----AA-GTATTT-GG-ATA---TNAGTTTGAA-CCA-GAGCTT-TAC-AGAGG-AAG-A----AA-TTG-T-TTCCC-AGAATTA-ATGCTT-CCT-CACCA-GAAACTGACT-TTAA-TG--AGA-GA--GGANTT-TCTCT-GG-ATTGTTGTGC-TTGTGAAAAAT-TGTTCAA-T-TT-TACCTACA-TTCAAG-GAG-TG-TC-TCTGTTGT-CATGAGT--TT-GACCATT-ATG---TTTTGG-ATT---ATATAAAC-ATGCACACAAAGTGCATT-TCTCTA-CATCC--------TGA-T----G---C---ACA----GTGTGTGT-CTAAGTCCTGT-TAT-CCTTGA---ACAGCTTG--TACATT-ATCTATCTCGGGTACAAAA-GC-CACAGAGG-A-TTC-GGAAGAGCCCCAGAGCACTTACAT--A--A-CAAGTA-AGA--AAAAC---------AC-AAAC-A-AAAGTGGAAAATAT----T-ATCTGC--TGT--A-TTTA-TCAAAA-T-CT-AAA------CA-TA-GCAT-GCCATTTG-TGTGT----A---AACATTTCCA-CA-TT-CACC-TATG-----TAATA-G--GACACATT-------TCTGTT-GC-A-GACA---A-TCAAG-ATTTATGGCT-TACA-CAGACAAATTCATTA--AT-TGGGTCAGACGTGGTCAGCCTCTG-G-----------GA----------G--T-------AGT--AG-T--TACCCTCA--TGTGTTGTG-ACGGAAATAAGGAAAA-CATTTT--AT-GATGAA-GATG-ACAAA--TT-------AT-C-------AGACTC-GGA-A-TAA-GTA-ATC-TTTCA--AT--AGACA-AA-TGT-------T-ATTG-T-------A---------TCACC-A---AACATTAT--CAGTC-TAT-A--TGGTC--------C--A------------T------AT-------TAA-T-CA----------A-TGTA-T-A-AA--T-TGT-----ATGATAATAA-A-GC----AGTAC-T-T--AT--TAT-CT------T-AC-A--GCAATCTTGTT-TATTTCC---AA-ATA-T-TTAA------TA-CA--TGTA-TA-T-TCTAA--TTGA-T--T-GAATC-TTGAAATAT---GTG-TT-G-T-T-ACAT-TCA-GA-CATCT--TT--ATCG-TG--CACTAGC-CGTGTAACAGTGACCC-T---AGTCTCCAGCAGC--AA-TGT-----GGC-C-A-T-T---TA-C-GT-CAGA-----ACACAGA--TGCA---TG--CTGG--GA-ATTAAT-G-----GA--TAC----CCTCCATAAACCTTTCATTTAGAGTGT-TTAA-TTG-----ATGAAATCTCC-TA---AGAGA---A----ACAA-----A-----------C--GCT-------------TT----------TAT---TTTCAGAAGGCATTCTAAG-TTT-GCTGTGC-AAAAATAGTT
gi|1 : ATTACC--CCT--TCT-AGGT----TTATTCTCTTGG-----AT-CTCCCAGAGG--C---A-GCA-CTG-ATGCTGGACG--T-CA-TTGG-CCA--CATTGC---TTTT-G-CACA--------TT------------------------CT-CTTAGTAACACAC-------GTGAA--AACG--TCA-A--CATCAGAA-AGTGAACCTAA-AATACTGAGGAC--G-A-AC-TG----AA-GTATTT-GG-ATACTATAAATTTGAATCCA-GAGTTTATAC--GAGG-AAG-A----AAATTG-T-TTTCC-AGAATTATATATTTTCCT-CACCA-GAAACTGACT-TTAA-TG--AGA--ATTGAAATT-TCTAT-GGAATTATTGAGCTTTGTT-AAAAT-TGTTCAA-T-TTATACC-ACATTTCAAGAAAG-TG-TTATCTGTTGTCCATGAGT--TT-AACCATTGATG---TTTTGG-A-T---AGATAGAC-ATACACACAAAG-GTATT-TCTGTAGCATCC--------TGA-C----G---TTTGACAACGTGTGTGTGT-CT-AGTCCTGTGCAG-C--TG----ACAGC------ACATTAATCTATCTCCGG-ACAAAA-GC-CACAGAGG-A-TTCGGGAAGAGCCCCAGAGCACTCACATTCAGTA-GAGGCA-TGACGAAAACGAAATGAGAACTAGAC-ATAAAGAAGAA---AT----TGATCTGC--TGCTGA-TTTA-TCAAAATT-CTAAAA------CA-T---TAT-G-CACTTGTTGTGTTTCAA---AACATGTCCA-CAGTT-CACC-TA-GTCAATTAATG-G--AACACATT-------TCTGTT-GC-A-GACA---A-TCAAG-AATTATGGCT-TACA-CAGACCAATTCA-TA--ATGTGCGT-AGATGTGGTCA-CCTCTG-GGGAAAATTCAAGA----------G--T-------AGTG-AA-T--TACTC-------TGTTGTG-ATG--AATAATGAAAA-CATTTT--TTAGATGAA-GATG-A-AAA--TT-------AT-C-------AGACTC-GGA-A-TAA--TA-ATCTTTTCA--AT--AGACA-AA-TGTTATGTA-T-ATTG-C-------A---------TCACC-A---AACATCA----GGTCTTAT-GATTGGTT--------C--A------------TGAAA--ATTAA----TAA-T-CA----------ATTGTA-T-A-AA--T-TGTA----ATGATAATAA-ACGC----AGTAC-T-----T--TATACT------T-ACTA--GCAATCTTGTTCTATTTTCACAAA-GTA-T-TTAA------TA-CA--TGTATTATT-TCTAA--TTGATT--T-GAATC-TTGAAA-AT---GTG----G-T-TAACAT-TCA-GA-CATCT--TT--AT-G-TT--CGC--GC-CG------AGT------------TCTCCAGCAGC--AA-TGT-----GGC-C-A-A-T---TA-C-GT-CAGA-----ACACAGA--TGCA---TGA-CT-G--GA-AT--ATGG-----GA--TAC----CTCCCATAAACCTTTC-TTTAGAGTGT-TTAATTTG-----ATGAAATCT-C-TA---AGTGA---ACACTACAA-----A-----------C--AGT-------------TTAGGCCATCACTATTTATTTCAGAAGGCATTCTAAGTTTT-GCTGTGC-AAAA
gi|10 : gtattaagaagtgttcatgaaaatctatgacaagggtttaaaattgtcattttgaatgtaatatgattttgaaaaccatacgatgtgctttccccgtcaaggagatttttcataaagatctaactaattgtacaatccatggagctgccatattgataaattaATTACCTCCCT--GCT-AGGT----T-AT-CTCT-----AGCAT-CTACCAGAGGT-C---A-GCA-CTGTATGCTG-ACG--T-CAGTTGGGCCA--CAT-GC--ATTTTTGGCACA--------TT------------------------CT-CTTAGTA--ACAC----AATGTGAA--AATG--TCA-A--CATCAGAA-A-TGAACT--A-AATAATGAG-AC-CGAA-AC-TG----AA-GTATTT-GG-ATA---TGAATTTGAA-CCA-GAGTTT-TAC-AGAGA-AGGAA----AA-TAG-T-TTCC---AAATTA-GTGTTT-CCT-CACCA-GAAACTGgaataagttatttctatgaacacttcc
gi|11 : taaaggaagtgttctgaaaatatgaacaaaggtttttaaaattgttcatttgatgtatataatgaattttgaaaatcatacaagatgtagctttcttcagtaaggagatatttcataaagattaactaatttttacaatccatggaagctgccatatgaataaaatC-AT-CACACAAAGTGTATT-TCTCTA-CATCC--------TGA-------------------------------------CT-T-TGA-CCTTGA----CAGCTTA-----ATT-A-CTATCTCG--TACAAAAAGCTCACAGAGG-AATTC-GGAAGAGCCCCAGAGCACTTACAT--C--A-GAAGTATAAA--AAAACC--------AC-AAA-----------------T----T-ATCTGCCTTGT--A-TT-A-TCAACA-TTCT-AAA------CA-TAAGCAT-TCCATTTG-TGTTT----ACA-AACATTTTCAACA-TT-CACA-TA-G-----TAATT-G--GATACATT-------TCTGTTTGC-AAGACC---A-TCA-G-ATTTATGGCT-TACA-CA-ACAAA-TCAT
gi|12 : -ATGCTT-CCT-GACCA-GCAACTGACT-TTAA-TG--AGA-GA--GTAATT-TCTAT-GG-ATTGGTATGG-TTGT-AAATAT-TGTTCAA-T-TT-TACCTACA-TTCAAG-GAG-TG-TC-TCTGTTGT-CATGAGT--TT----------------------------ATATAAAC-ATGCACACAAAGTGTATT-TCTCTA-CATCC--------TGACT----GTGAC---ACA----GTGTGTGT-CTAAGTCCTGT-TAT-CCTTGAAACACAGCTAGCTTACATT-ATCTATCTCAGGTACGAAA-GC-CAGAGAGG-aac
gi|14 : gT--A--A-CAAGTA-AGT--AAAAC---------AC-AAAC-A-AAAATGAAAAATAT-----------C--TGT--G-TTCA-T-----------AAA--------------AT-GCCAATTG-TGTGT----A---AACATTTCCA-CG-CA-TACC-TATG-----TGATA-G--AACACAAT-------TCTGTT-TG-A-TACA---A-TCAAG-AGTTATGGCG-T--A-CAGAT-AATTCATcagaacactt
gi|15 : ATTACCTCCCT--GCT-GGGT----T-AT-CTCC---T-AGCAT-CTAGAAGACAG-C---A-GCA-CTA-ATGTTG-ACG--T-CAGTAAG-AAA--CG-TAT--ATTTT-GGCACG--------
gi|16 : tctttcaatccttgggagctgccatattgataaattgTAAT-G-----GA--TAC----CCTCCATAAACCTTTCAATTAG--TGT-TTAA-TTG-----ATGAAATCTCT-TA---AGAGA---A----ACAT-----AGTTTTTAGCCTC--ACTA------------TT----------TAT---TTTCAGAAGGCATTCTAAG-TTT-GCTGTGC-AAAAATATTTgtgaacagtatcaacgcttatta
gi|18 : A--TT-------AT-C-------AGACTC-G-A-A-TAA-G---A-C-TTTCA--TT--AAAC-------------------TG-C-------A---------TCACC-ATCAAACAT-----CAGTC-TATCA--TGGTC--------C--AATTTGAACAGAAT------AT---------A-T-CA----------A-TGTA-T-A-AA--TATGT-----ATGATAATAA-A-ttttcatgaacacttc
gi|19 : AAA--TGCT---TA--TTTG--AA-AT-AAT-G-----GA--TTG----CCTCCATAAAACTTTCACTTGGAGTCT-TTGA-TTG-----ATCATATCTTG-TA---ATAGA---A----ACAA-----G-----------C--c
gi|2 : tTTACCTCCCT--GCCGAGGTCTTAT-ATACTCCTCGTGAATCT-CTACCAGAGGT-CGCGA-GCA------TGTTC-AGGATT-GGGTCAA-CCATTCGTTGCTTAGTTT-GGTACGCATTGTTATT-TACCACGGAGACTA-CCTTTCA-CTTCTTGCCA-CCCACTCTAG--GTGGATAAATG--TCACA--CATCACAG-ATTGAACT--A-AATAATGAA-ACGAG-A-AC-TGCAT-AG-GTATTT-GA-ATA---T-AGTTTGA--CCACGAG-TT-TAC-AGAGGCAAG-GGCAGAA-TTGATGTTCCC-AGGATTC-ATGCTT-CTTACGCAA-GAAA-TGACT-TTAAATG--AGATGA--GGATCT-TTTCT-GG-ATTGTTGTGC-TTGTTGGAAATGTTTTCAA-T-TT-TACCTA-A-TTCAAG-GAT-TA-TT-TCTGTTGT-CATGAGTCCTTGGACCA-T-ATGGTTTTTTGG-ATT---ATATAAAC-ATG-ACACAAAGTGCATTATCCCTA-CATCCCTGTTACTTGA----------C---ACA----GTGTGTGTACTAAGTCCT-T-TATCCCTTGG---ACTAC--G--TACATT-ATCTATCTCGAA-ACAAAA-GC-CAC-GAGG-A-----AGGGGAGTCCCAGA-CACTTACAT--A--AGCAAGTA-AGA--AACAC---------AC-AACCAA-AAAGTGGAAAA-AA----T-ATCTGC--TGT--A-TT---TCAAAT-T-CT-AAAACTTAGCAGTG-GCAT-GCTATTT--TGTGT----ACGTAACATTTCCA-CA-TT-CACCGCATT-----CAATG-GGAGACACATT-------TCTGTT-GCAA-GACA---G-TCAAACGTTTATGGCCGCACATCAGACAAATTC--------------TAGATGTGGTCAGCCTCTG-G-----------GG----------GAAT-------AATTCAGAT--TACCCTCAATTGTGTTGTG-ACTGAAATAAGGAAAA--ATTTTGGAT-AATGAA-GATG-ACAAA--TT-------AC-C-------CAACTCTGGACA-TAA-GTA-ATC-TTTCA--AT--AGACA-AA-TGTTAATGAAT-ATTG-T-------AG--------TCACT-C---AACATTATTCCAGTC-TAT-A--TGGTC--------C--A-------------------AT-------TGGTT-CACTGCAACAACA-TGTA-T-ATAG--T-TTTACATAATGATAATAAGA-GC----AGTAC-T-TTAAT--TAT-AT------TGAC-A--GCAATCTTGAT-TTTCTCC---AAGATA-A-TTAA------TA-CAATTGTA-TATT-TCTAA--TGCA-T--TGGAACCTTTGAAATAT---A-G-CT-GCT-T-AAATCTCAGGA-CATC---TT--A-CGTTG--CCGTAACGCGTGTAACAG-GACCC-TGAAACTCTCCAGCAGCTAAA-T-T-----GAC-C-A-TCT---TA-CTGT-CAGA-----A-ACAAG--TGaaattggctttag
gi|20 : acaatccatgggagtgaggctcgcatcatctttagataacaattaatGA---A----ACAAGTGCAA-----------C--ACA-------------TT----------TAT---TTTCATCAGCC-TTCTAAG-TTTTGCTGTGCAAAAAATAGT
gi|21 : -GG-ATA---TCAGTTCAAA-TCT-GAGCTT-TAC-AGAGA-AAA-A----AA-TCG---TTCTC-AT-ACTG-ATGCTT-CTT-CACCA-ACAATTGA-T-TTAA-CG--AAA-GG--GGGATT-Tctttttcatgacacttcctttaacgaaattgtct
gi|22 : -ATGCTC-TCC-CACCA-GCGACTGACT-TTAA-TG--AGA-GA--GGACTT-TCTCG-GG-ATTCGTGTGC-TTGTG-AAAAT-TGTTCAA-TGTC-TACt
gi|23 : -ATGCTT-TCC-CACCA-GCGACTGACT-TTAA-TG---GA-GA--GGACTT-TCTCG-GG-ATTCGTGTGC-TTGTG-AAAAT-TGTTCAA-TGTC-TACtc
gi|24 : CT-------------AT----------TAT---TTTCAGAAGGCATTCTAAG--TT-G-TGTGC-AAAAATATTTtc
gi|25 : cataaacagtttttcaagcctcaa-TT-AACCTACA-TTCAAG-GAG-TG-TT-TTTGTTGT-TATGAGT--TT-GAATATT-ATtttttcatgaacact
gi|26 : ACT--A-AATAGTGAG-AC-AG-A-AG-TA----CATGTATTT-GG-ATA---CCAG
gi|27 : ATT-------TCTGTT-GC-A-GACA---A-TCAAG-ATTTATGGCC-CACA-CAGACaa
gi|3 : CATTACCTCCCT--GCT-AGGC----T-AT-CTCTTAATTAACAT-CTACCAGAGGT-C---A-GCA-CTG-ATGCTG-ACG--T-CAGTTGG-TCA--CATTGC--ATTTT-GGCACA--------TTATAC----------AGCA--TCAACT-CTTATTA--ACAC----A--GTGAC--AATG--TCA-A--CATCAGAA-AGTGGACT--A-AATAATGAG-AC-AG-A-AC-TG----AA-GTATTT-GG-ATA---TCAGTATGAA-CCA-GAG-TT-TAC-AGAGG-AAG-A----AA-TTG-T-TTCCC-AGAATTATATGCTT-CCT-CATCA-GAAACTGACT-TTAA-TG--AGA-GA--GGACTT-TCTCT-GG-ATTGTTGTGC-TTGTGAAAAAT-TGTTCAA-T-TT-TACCTATA-TTCAAG-GAG-TG-GC-TCTGTTGT-CATGAGT--TT-GACCATT-ATG---TTTTGG-ATT---ATATAAAC-ATGCACACAAAGTGCATT-TCTCTA-------------------------------ACA----GCGTGTGT-TTAAGTCCTGT-TAT-ACTTGAT--ACAGCTTA--TACATT-ATCTATCTTGGGTACAAAA-CC-CAGAAAGGAA-TT----AAGAGCTCCATAGCACTTACAT--A--A-CAAGTA-AGA--AAAAC---------AC-AAAC-A-AAAGTGGAAAACATACAGT-ATCTGC--TGT--A-TTTA-TCAAAA-T-CA-AAA------CA-TA-GCAA-GCCATTTG-TGTGT----A---AACATTTCCA-CA-TT-CACCTTATG-----TAATA-G------CATT-------TCTGCT-GC-G-GACA---T-TCAAG-ATTTATGGCT-TACA-CAGACAAATTCATTAATAT-TGGGTCAGATGTGGTCAG------------------------------------------AGT--AG-TTATACCCTCA--TGTGTTGTG-ATGGAAATAAAGAAAA-CATTTT--AT-GATGAA-GATG-ACAAA--TT-------AT-C-------AGACTC-CGA-A-TAA-GTT-ATC-TTTCA--AT--AGACA-AA-CGT-------T-ATTG-T-------A---------TCACC-A---AACATTAT--CAGTC-TAT-A--TGGTC--------C--A-------------------A--------TAA-T-CA----------G-TGTA-T-A-AA--T-TGT-----ATGATAATAA-A-GA----AGTAC-T-T--AT--TAT-CT------T-AC-A--GCAATCTTGTT-TATTTCC---AA-ATA-T-TTAA------TA-CA--TGTA-TA-T-TCTAA--TTGA-T--T-GAATC-TTGAAATAT---GTG-TTAA-T-TAACAT-TCA-GA-CATCT--TT--ATCG-TG--CACTAAC-TGTGTAACAGTGACCC-TG--AGTCTCTAGCAGC--AA-TGT-----GAC-C-ATT-T---TA-C-GT-CAGA-----ACACATA--TGTA---TG--CTGG--GA-ATTAAT-G-----GA--TAC----CCTCCATAAACCTTTCATTTAGAGTGT-TTAA-TTG-----ATGAAATCTCC-TA---TGAGA---A----ACAA-----A------------------------------------------TAT---TTTCAGAAGTCCTTCTAAG-TTT-GCTGTGC--AAGATAGTT
gi|4 : atTGA-ATT---TTATAAAC-ATGCACACAAAGTACGTT-TCTC---CATCC--------TGA-TTTTGA---C---ACA----GTATGTGT-CTAAGTCCTGT-TAT-CATAGAG--ACAGCTTG----CATT-ATCTATATCGGGTATAAAA-GC-CACAGAG-----------------------CACTTACGT--A--T-CAAGTA-AGA--AAAAC---------AC-AAAC-A-AAAGGTGAAAATAT------ATCTGC--TGT--A-TTTA-TCAAAT-T-CT-AAA------CA-TA-GCAT-GTCATTTG-TGTGT----A---AACATTTTCA-CA-TT-CACC-TATG-----TAATA-G--GACACATT-------TCTGTT-GC-A-GACA---A-TCAAG-ATTTATGGAT-TACA-CAGAAAGAATCATTA--AT-TGGGTCAGATGCGGTCAGCCTCTG-G-----------GG----------G---------------AA-A--TACCCTCA--TGTGTTGTG-ATGCAAATAAGGAACA-CCTTTT--AT-GATGAA-GATG-AACAA--TT-------AT-C-------AGATTC-GAA-A-TAA-GTA-ATC-TTTCA--AT--AGACA-AA-TGT-------T-ATTG-TATATTGCA---------TCACC-A---AATATTAT--CAGTC-TAT-A--TGGTC--------C--AAT----------T------GTTCATCAATAA-T-CA----------A-TGTA-T-A-AA--T-TGT-----ATGATAATAA-A-GC----AGTAC-T-T--TA--TAT-CTATATGAT-AC-A--GTAATCTTGTT-CATTTCC---AA-ATA-T-TTAATATATGTA-CG--TGTA-TA-T-TCTAA--TTGA-T--T-GAATC-TTGAAATAT---GTG-TT-A-----ACAT-TCA-GA-CATCT--TT--ATCG-TG--CACTAGC-TGTGTAACAGTGACCCTT---AGTCTCCAGCAGC--AA-TGT-----GGC-CAA-T-T---TA-C-GT-CTGA-----ACACAGA--TGCA---TG--CTGG--GA-ATTAAT-G-----GA--TAC----CCTCCATAAACCTTTCATTCAGAGTGT-TTAA-TTG-----ATGAAATCTCC-TC---AGAGA---A----ACAA-----A-----------CAAGCTTTTAGCCTCACTATT----------TAT---TTTCAGAAGGCCTTCGAAG-TTT-GCTGTGC-AAAAATAGTT
gi|5 : CATTACCTTCCTTTGCT-AGGT----A-TT-TTCTTAG---GCATTCTACACGAGGTGC---AAGCAACTG-ATGCTG-ACG--TATGGTTTG-CCA--TAT--C--ATTT--GGCACA--------TTCTAC-------------------------TAGTA-CACAC----A--GTGAA--AATAGCTCA-ATGCATCAGAACAGTGAACT--AGAATAACGAG-AC-AG-ATACGTGTAGTGA-GTATTTTGGCATA---TGAATTTGAA-CCA-GAGCTT-TACCAGAG--AAG-A----AACTTG-T-TCCCCGAGAATTA-GTG--T-CCT-TACCATGAAACTGACTGTTAA-TGTCAGA-GA--GAATTTGTCTCTTGG-ATTGTTGAGC-TTGTAAAAAAT-TGTTCAAAT-TT-TACCTACA-TTCAAG-AAGGTGCTC-TCTGTTGT-CATGATA--GT-GACCCAT-AAG---TTTTGGCATTCAGA-ATAAGCCATGCACACAAAGTGTATT-TCTCTA-CATCC--------TGA-ttttcatgaacactaccttta
gi|6 : attaaaggaagtgttcatgaaaatatgttatacaacttagggcctttaaatatgtcgtcatttttgcatttgtatattaatgaatttttgataatcattacaagtagctttcctccagtaataatatctatgaaagattagtagctaattttacaattccatggaaagctccatattgataataagAT-GCCATTTG-TGTGT----A---AACATTTCAA--A-TAACACA-AACA-----TGATA-G--GGTATAGTAACAA--T-TAAT-GC-A-GACATGCACTCAAC-ATTTATGGC---ATA-AAGACAG-TTTATCA--AC-TGGGTCAGACGAGGTCAGCATCTT-A-----------GA----------G--TGAGCTAGAGT--AG-TTCTACTCTCA------TTGTG-ACAAAAGTTAGAGAGG-CATTTC--CT-GATGAATGCTG--C-AA--TT--------T-C-------TGAAT------A-TAATGTATTTT-TTTCAGTAT--AAATA-AACTGTA------A-ATTG-C-------A---------TCACC-A---AA-ATT-C--CTGT--TAA-A-----TC--------C--A------------T------GT--------------A----------C-TGTACT-A-CA--T-CA------ATCATAATCA-A-AC------------T--GT--TAT-AT------G-AC-ACGGTGACC-----------CC---AA-TTA-TATTCA------CACCA--TATA-AA-A-TC-AG--TTGA-TTAT-GAATC-CTGAAATATACAGTGCTT-G-TGT-ACAT-TGA-GA-cttttgaactcagtgcgagtgt
gi|6 : TGCAA-AGTAACCC-----AGTTACCAACAGC--AA-TGT-----GTCTC-A-T-C---TA-C-AT-CAAA-----GCACAGT--TGCA---TG--CTGG--GA-AATAAT-G-----GA--TGCATGACCTTCATAAACCTTTCATTTAGAagttggaggagctcatgcaagagatttttttcttccttgatggtgcattgtttcaattctttcaatttgcacaaaaaccttatccatgaattctaatataaatccattatcttctgctgcaaagtaacccagttaccaacagcaatgtgtctcatctacatcaaagcacagttgcatgctgggaaataatggatgcatgaccttcataaacctttcatttaga
gi|7 : atgccatttgtgtgtaaacatttcaaataacacaaacatgatagggtatagtaacaattaatgcagacatgcactcaacatttatggcataaagacagtttatcaactgggtcagacgaggtcagcatcttagagtgagctagagtagttctactctcattgtgacaaaagttagagaggcatttcctgatgaatgctgcaatttctgaatataatgtatttttttcagtataaataaactgtaaattgcatcaccaaaattcctgttaaatccatgtactgtactacatcaatcataatcaaactgttatatgacacggtgaccccaattatattcacaccatataaaatcagttgattatgaatcctgaaatatacagtgcttgtgtacattgagaagttggaggagctcatgcaagagatttttttcttccttgatggtgcattgtttcaattctttcaatttgcacaaaaaccttatccatgaattctaatataaatccattatcttctgcC-AAAC-A-AAA-TGGAAAAT------T-AT-TGC--TGT--AATTTAATCAAAA-T-TT-AAA------CA--A-TCATTGCAATTTG-TGTGTTTACA---AACATT--CA-C--TT-CAC--TATG-----TACTACG--GACACATTGTACATTTCTGTT-GC-A-GACA-----TCAAG-ATGTATGGCT-TACA--AGACAATTTCATTA--AT-TGGGTCAGATGTGGTCAGCCTCTG-G-----------GAAAATTCAGATG--T-------AGTC-AG-T--TACTC-----TGTGTTGTGCATGG-ATTAAGGAAAA-CATTTT--AT-GATGAA-GATGAACAAAATTT-------AT-C-------AGACTC-AGA-ATTAA-GTA-ATC-TTTC---AT--AGACA-AA-TGT-------T-ATTG-T-------ATAATTGCAGTCACCTC---AAC---AT--CAGTC-TAT-A--TGGT---------C--A------------TTGAAAAATTA-----TAA-TACC----------A-TG-A-TAA-AA--T-TGTTA---ATGATAATAA------------GC-T-T--A-----------------AC-A--GCAAT-TTGTT-TATTTCC----A-ATATT-TTAA------TA-CA--T-TA-TA-TATTTAATTTTAA-T--T-GAATCTTTGAAA-------------------------CA-GACCATCT--TTAAATCG-TGGCCACTAGCTTGCGTAAC-------------AGTCTCCAGCAGC--AATTGT-----GGC-C-A-T-T---TA---GT-CAGA-----ACACAAA--TGCA---TG--CT-G--GA-ATTAAT-G-----GA--TA-----GCTCCAT-ACCCTTTCATTTAGAGTGC-TTAA-TTG------TGAAATCT
gi|8 : GGGTCAGACCTAGTCGGCCTCTGCG-----------GA----------A--A-------A-----------AACCTCA--TGTGTTGTG-ATGAAAATAAGGGAAATCATTTC--CC-GATGAA-GATG-GCAAA--TTCGGAGGAAT-TTTCTAATAGAATC-GGA-A-TAA-GTA-ATC-TTTCA--GTGCAAACA-AT-TGT-------T-ATCG-T-------AAATTGAT--TTACC-A---AAATTTAT--CAGTC-TAC-A--TGCTC--------C--A------------T------GTATATCTATAA-T-CA----------A-TGTA-T-A-AA--T-TGT-----ATGACAATAC-A-GC----AGTATGT-T--ATAATAT-CT------T-TT-A--GCAATCTTGTT-TATTTCG---AG-ACA-T-CTAA------TA-CA--T-----A-T-TCTAA--CTGA-T--T-------TTG-----T---GTT-TT-G-----GCAT-TCA-GG-CATCTCTTT--ATCA-TG--CACTAAT-TATGTAACAGTGACCC-A---AA-CTACAGCAGC--AA-TGA-----GTC-T-AAT-T---TA-C-GT-CAGA-----ACACAGA--TGCA---TG--CTGG--GA-ATTCAT-G-----GA---AC----CTTCCATAAACC-------------GT-TTAA-TTG-----ATGACATTTCC-TA---GGAGA---A----ACGA-----A-----------C--
gi|9 : AAA--TTT------ATAC-------AGGACC-GGAGA-TAA-GTA-ATC-TTTCA--ATA-AGACATAA-TGT-------TAATTGATACATGCGA---------TCACC-A---AAC---AT--CAGT--TATAA--TGGTCAATTTTGACGAA------------T------ATAA-----TAA-T-CA----------A-TGTA-T-G-AAGGT-TGT-----AT-ATAATCA-A-CCTTAGAGTCC-TCT--AT--T--------------C-A--G-----TTCTT-TATTTCaaacaagttcttagccacacttttaatttttagaagacctagtttttcatcctaaagtgtttttttttcatgaacacttaatttagtttttgt
gi|9 : aaCC-C---AGTGCTCATTGGC--AA-TGTTTTGAGGC-C-A-T-TATTTAAC-GTACAGACTTTGACACAGAATTACAGATTGACTTGGTAGACATTAAT-GTTAACGAGCTAC----CT--CATAATCTTCTAATTTAGAGTGTATTAA-TTGAATGCATAAAATCTCTGTAATCAGAGACTTA----ACAA-----A-----------tgattagggcagccctatcttgtgttatccattaatccaaatagttctttccccaagataattttatacattggggcatgagtagtattcttgaaatatgtcatcatggtgtgaacaaatttcaagaggcggattctcttttcgtgtcatctaggactttcgattgtatgttcacatgttttttagcggccttcgataatcattcccagtgctcattggcaatgttttgaggccattatttaacgtacagactttgacacagaattacagattgacttggtagacattaatgttaacgagctacctcataatcttctaatttagagtgtattaattgaatgcataaaatctctgtaatcagagacttaacaaa
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|13 ): TTTAAAGTAGGTGTTCATGAAAATATGACAAAGGGTTTAAAATTGTCATTTTGATGTATATAATGAATTCTGAAAATAATAAAGATGTAGCTTTCTTCAGTAAGGAGATATCTTATAAAGATTAACAAATCTTTACAATCCATCGAACT
Unaligned ( gi|17 ): AGGAAGTGTTCATGAAAATATGACAAATGGTTTAAAGTATATAATGCTCTTTGAATATCATAGAGATATAGCTTCCTTCGGTAAGGACATATTTCATACGACAAACAAATCTTTACAATCC
Alignments
lowQualScore : 11111111111111111111111111111111111 11111111111111111111111111111111111111111111111 1111111111111111111111111111111111111111111111111111111111 1111111111111111111111111111111111111111111111111111111111111
lowQualScore : 111111 1 33333 111 33333333333333333333333333333333333 11 3333333 11 11 11 2222 111 1 11 111111 1 111 22 1 111 111 555555555 1111 2222 333333 33333333 1111111 333333333 222222222 2222222222222 22222222 11 1111111 2222222 11111 00000000000000000000000000000000000000000000000 1111111 1111111 11 55555555555555555555555555555555 11111111 0000000000000000000000000000000000000000000000000000000000 22222 11111 3333333333333333333333 111 111111 111 1 4444444444444444444 11 22222 11111 1111111 11111 11 11111 11111 111 1111 1111111111111111111111111111111111111111111111111111111111111 111 1
lowQualScore : 99 6 666666 3 88888 6 99 111 6 6 6 6 99 6 0 4 6 99 0 7 99 6 88888888888888888888888888888888888 8 88 1111111 11 11 8 11 8 5 99 6 6 99 6 6 6 5555 6 5 5 000 6 6 6 2 6 6 00 444444 3 222 6 1 8 4 4 4 1 5 5 66 5 66 1 5 5 5 1 5 00 5 5 0 5 1 6 6 6 6 6 6 99 77 999 444 6 3 111 3 5 5 5 5 77 777777777 4444 6 1 2 6 6 2 6666 000000 6 1 7 6 6 77777777 5 5555555 6 99 333333333 5 555 44 1 999999999 0 77 77 5 777 7777 5 5555555555555 5 5 77777777 5555 5 22 2222222 5 777 5555555 4 4 4 33333 4 66 4 0 00 0 99 6 1 00000000000000000000000000000000000000000000000 5 999 5 1 66 5 999 5 5 6666 66 8888888 4 4444444 0 4 0 8 4 4 4 4 66 00 4 4 99999999999999999999999999999999 88888 00000000 55 8 66 1111111111111111111111111111111111111111111111111111111111 4 4 4 4 66 4 11111 555 00000 5 0000000000000000000000 5 66 0 5 000 5 666 666666 5 77 6 5 111 77 5 77 5 1 8888888888888888888 5 5 5 99 99 6 99 44 0 0 44 77777 66 5 22222 0 5 5 0000000 666 5 22222 66 888 11 5 66 5 1 4 11111 66 9999 5 5 22222 5 000 888 0000 4444444444444444444444444444444444444444444444444444444444444 5 000 1 5 5 6
lowQualScore : .. . ...... . ..... . .. ... . . . . .. . . . . .. . . .. . ................................... . .. ....... .. .. . .. . . .. . . .. . . . .... . . . ... . . . . . . .. ...... . ... . . . . . . . . . .. . .. . . . . . . .. . . . . . . . . . . . .. .. ... ... . . ... . . . . . .. ......... .... . . . . . . .... ...... . . . . . ........ . ....... . .. ......... . ... .. . ......... . .. .. . ... .... . ............. . . ........ .... . .. ....... . ... ....... . . . ..... . .. . . .. . .. . . ............................................... . ... . . .. . ... . . .... .. ....... . ....... . . . . . . . . .. .. . . ................................ ..... ........ .. . .. .......................................................... . . . . .. . ..... ... ..... . ...................... . .. . . ... . ... ...... . .. . . ... .. . .. . . ................... . . . .. .. . .. .. . . .. ..... .. . ..... . . . ....... ... . ..... .. ... .. . .. . . . ..... .. .... . . ..... . ... ... .... ............................................................. . ... . . . .
lowQualScore : 22 7 222222 3 55555 7 88 777 7 7 7 7 22 7 7 8 7 22 7 3 22 7 22222222222222222222222222222222222 0 00 8888888 00 00 0 00 0 0 22 7 7 88 7 7 7 8888 7 7 7 000 6 7 7 0 7 7 33 333333 3 555 7 7 9 4 4 4 7 0 0 99 0 99 0 0 7 7 3 7 77 7 7 0 0 0 7 7 7 7 7 7 22 77 222 000 7 2 777 2 7 7 7 7 99 555555555 2222 7 7 5 7 7 5 7777 777777 7 0 3 7 7 99999999 0 3333333 7 22 333333333 7 999 66 4 444444444 7 99 99 7 333 7777 7 1111111111111 0 0 99999999 2222 0 55 8888888 0 111 6666666 4 4 4 22222 4 99 4 1 88 1 22 7 4 11111111111111111111111111111111111111111111111 0 333 7 4 77 7 444 7 7 7777 11 9999999 4 4444444 1 4 1 9 4 4 4 4 11 66 4 4 77777777777777777777777777777777 66666 77777777 66 9 11 2222222222222222222222222222222222222222222222222222222222 4 4 4 4 11 4 77777 333 88888 0 4444444444444444444444 0 99 2 0 000 7 111 444444 7 99 6 7 999 99 7 99 7 4 7777777777777777777 7 7 7 22 22 7 22 00 1 7 44 00000 99 0 55555 2 0 0 9999999 222 0 55555 11 888 99 6 99 0 9 4 11111 11 4444 0 0 55555 7 000 888 6666 0000000000000000000000000000000000000000000000000000000000000 7 000 9 7 7 7
consensus : NNCATTACCTCCCT--GCT-AGGT----T-AT-CTCTTAGT-AGCAT-CTACCAGAGGT-C---A-GCA-CTG-ATGCTG-ACG--T-CGGTCGG-CCA--CGTTGC--ATTTT-GGCACG--------TT-TAC----------A-C---TCA-CT-CTTAGTA-CACAC----A--GTGAA--AATG--TCA-A--CATCAGAA-AGTGAACT--A-AATAATGAG-AC-AG-A-AC-TG----AA-GTATTT-GG-ATA---TNAGTTTGAA-CCA-GAGCTT-TAC-AGAGG-AAG-A----AA-TTG-T-TTCCC-AGAATTA-ATGCTT-CCT-CACCA-GAAACTGACT-TTAA-TG--AGA-GA--GGANTT-TCTCT-GG-ATTGTTGTGC-TTGTGAAAAAT-TGTTCAA-T-TT-TACCTACA-TTCAAG-GAG-TG-TC-TCTGTTGT-CATGAGT--TT-GACCATT-ATG---TTTTGG-ATT---ATATAAAC-ATGCACACAAAGTGCATT-TCTCTA-CAT-CCTG--ACT---AC---ACA----GTGTGTGT-CTAAGTCCTGT-TAT-CCTTGA---ACAGCTTG--TACATT-ATCTATCTCGGGTACAAAA-GC-CACAGAGG-A-TTC-GGAAGAGCCCCAGAGCACTTACAT--A--A-CAAGTA-AGA--AAAAC---------AC-AAAC-A-AAAGTGGAAAATAT----T-ATCTGC--TGT--A-TTTA-TCAAAA-T-CT-AAA------CA-TA-GCAT-GCCATTTG-TGTGT----A---AACATTTCCA-CA-TT-CACC-TATG-----TAATA-G--GACACATT-------TCTGTT-GC-A-GACA---A-TCAAG-ATTTATGGCT-TACA-CAGACAAATTCATTA--AT-TGGGTCAGACGTGGTCAGCCTCTG-G-----------GA----------G--T-------AGT--AG-T--TACCCTCA--TGTGTTGTG-ACGGAAATAAGGAAAA-CATTTT--AT-GATGAA-GATG-ACAAA--TT-------AT-C-------AGACTC-GGA-A-TAA-GTA-ATC-TTTCA--AT--AGACA-AA-TGT-------T-ATTG-T-------A---------TCACC-A---AACATTAT--CAGTC-TAT-A--TGGTC--------C--A------------T------AT-------TAA-T-CA----------A-TGTA-T-A-AA--T-TGT-----ATGATAATAA-A-GC----AGTAC-T-T--AT--TAT-CT------T-AC-A--GCAATCTTGTT-TATTTCC---AA-ATA-T-TTAA------TA-CA--TGTA-TA-T-TCTAA--TTGA-T--T-GAATC-TTGAAATAT---GTG-TT-G-T-T-ACAT-TCA-GA-CATCT--TT--ATCG-TG--CACTAGC-CGTGTAACAGTGACCC-T---AGTCTCCAGCAGC--AA-TGT-----GGC-C-A-T-T---TA-C-GT-CAGA-----ACACAGA--TGCA---TG--CTGG--GA-ATTAAT-G-----GA--TAC----CCTCCATAAACCTTTCATTTAGAGTGT-TTAA-TTG-----ATGAAATCTCC-TA---AGAGA---A----ACAA------------------A-----------CA--CT-------------TT----------T-AT---TTTCAGAAGGCATTCTAAG-TTT-GCTGTGC-AAAAATAGTT
Reference ( family-366 ) : NNCATTACCTCCCT--GCT-AGGT----T-AT-CTCTTAGT-AGCAT-CTACCAGAGGT-C---A-GCA-CTG-ATGCTG-ACG--T-CGGTCGG-CCA--CGTTGC--ATTTT-GGCACG--------TT-TAC----------A-C---TCA-CT-CTTAGTA-CACAC----A--GTGAA--AATG--TCA-A--CATCAGAA-AGTGAACT--A-AATAATGAG-AC-AG-A-AC-TG----AA-GTATTT-GG-ATA---TNAGTTTGAA-CCA-GAGCTT-TAC-AGAGG-AAG-A----AA-TTG-T-TTCCC-AGAATTA-ATGCTT-CCT-CACCA-GAAACTGACT-TTAA-TG--AGA-GA--GGANTT-TCTCT-GG-ATTGTTGTGC-TTGTGAAAAAT-TGTTCAA-T-TT-TACCTACA-TTCAAG-GAG-TG-TC-TCTGTTGT-CATGAGT--TT-GACCATT-ATG---TTTTGG-ATT---ATATAAAC-ATGCACACAAAGTGCATT-TCTCTA-CAT-CCTG--AC----GC---ACA----GTGTGTGT-CTAAGTCCTGT-TAT-CCTTGA---ACAGCTTG--TACATT-ATCTATCTCGGGTACAAAA-GC-CACAGAGG-A-TTC-GGAAGAGCCCCAGAGCACTTACAT--A--A-CAAGTA-AGA--AAAAC---------AC-AAAC-A-AAAGTGGAAAATAT----T-ATCTGC--TGT--A-TTTA-TCAAAA-T-CT-AAA------CA-TA-GCAT-GCCATTTG-TGTGT----A---AACATTTCCA-CA-TT-CACC-TATG-----TAATA-G--GACACATT-------TCTGTT-GC-A-GACA---A-TCAAG-ATTTATGGCT-TACA-CAGACAAATTCATTA--AT-TGGGTCAGACGTGGTCAGCCTCTG-G-----------GA----------G--T-------AGT--AG-T--TACCCTCA--TGTGTTGTG-ACGGAAATAAGGAAAA-CATTTT--AT-GATGAA-GATG-ACAAA--TT-------AT-C-------AGACTC-GGA-A-TAA-GTA-ATC-TTTCA--AT--AGACA-AA-TGT-------T-ATTG-T-------A---------TCACC-A---AACATTAT--CAGTC-TAT-A--TGGTC--------C--A------------T------AT-------TAA-T-CA----------A-TGTA-T-A-AA--T-TGT-----ATGATAATAA-A-GC----AGTAC-T-T--AT--TAT-CT------T-AC-A--GCAATCTTGTT-TATTTCC---AA-ATA-T-TTAA------TA-CA--TGTA-TA-T-TCTAA--TTGA-T--T-GAATC-TTGAAATAT---GTG-TT-G-T-T-ACAT-TCA-GA-CATCT--TT--ATCG-TG--CACTAGC-CGTGTAACAGTGACCC-T---AGTCTCCAGCAGC--AA-TGT-----GGC-C-A-T-T---TA-C-GT-CAGA-----ACACAGA--TGCA---TG--CTGG--GA-ATTAAT-G-----GA--TAC----CCTCCATAAACCTTTCATTTAGAGTGT-TTAA-TTG-----ATGAAATCTCC-TA---AGAGA---A----ACAA------------------A-----------CA--CT-------------TT----------T-AT---TTTCAGAAGGCATTCTAAG-TTT-GCTGTGC-AAAAATAGTT
gi|1 : ATTACC--CCT--TCT-AGGT----TTATTCTCTTGG-----AT-CTCCCAGAGG--C---A-GCA-CTG-ATGCTGGACG--T-CA-TTGG-CCA--CATTGC---TTTT-G-CACA--------TT------------------------CT-CTTAGTAACACAC-------GTGAA--AACG--TCA-A--CATCAGAA-AGTGAACCTAA-AATACTGAGGAC--G-A-AC-TG----AA-GTATTT-GG-ATACTATAAATTTGAATCCA-GAGTTTATAC--GAGG-AAG-A----AAATTG-T-TTTCC-AGAATTATATATTTTCCT-CACCA-GAAACTGACT-TTAA-TG--AGA--ATTGAAATT-TCTAT-GGAATTATTGAGCTTTGTT-AAAAT-TGTTCAA-T-TTATACC-ACATTTCAAGAAAG-TG-TTATCTGTTGTCCATGAGT--TT-AACCATTGATG---TTTTGG-A-T---AGATAGAC-ATACACACAAAG-GTATT-TCTGTAGCAT-CCTG--AC----GTTTGACAACGTGTGTGTGT-CT-AGTCCTGTGCAG-C--TG----ACAGC------ACATTAATCTATCTCCGG-ACAAAA-GC-CACAGAGG-A-TTCGGGAAGAGCCCCAGAGCACTCACATTCAGTA-GAGGCA-TGACGAAAACGAAATGAGAACTAGAC-ATAAAGAAGAA---AT----TGATCTGC--TGCTGA-TTTA-TCAAAATT-CTAAAA------CA-T---TAT-G-CACTTGTTGTGTTTCAA---AACATGTCCA-CAGTT-CACC-TA-GTCAATTAATG-G--AACACATT-------TCTGTT-GC-A-GACA---A-TCAAG-AATTATGGCT-TACA-CAGACCAATTCA-TA--ATGTGCGT-AGATGTGGTCA-CCTCTG-GGGAAAATTCAAGA----------G--T-------AGTG-AA-T--TACTC-------TGTTGTG-ATG--AATAATGAAAA-CATTTT--TTAGATGAA-GATG-A-AAA--TT-------AT-C-------AGACTC-GGA-A-TAA--TA-ATCTTTTCA--AT--AGACA-AA-TGTTATGTA-T-ATTG-C-------A---------TCACC-A---AACATCA----GGTCTTAT-GATTGGTT--------C--A------------TGAAA--ATTAA----TAA-T-CA----------ATTGTA-T-A-AA--T-TGTA----ATGATAATAA-ACGC----AGTAC-T-----T--TATACT------T-ACTA--GCAATCTTGTTCTATTTTCACAAA-GTA-T-TTAA------TA-CA--TGTATTATT-TCTAA--TTGATT--T-GAATC-TTGAAA-AT---GTG----G-T-TAACAT-TCA-GA-CATCT--TT--AT-G-TT--CGC--GC-CG------AGT------------TCTCCAGCAGC--AA-TGT-----GGC-C-A-A-T---TA-C-GT-CAGA-----ACACAGA--TGCA---TGA-CT-G--GA-AT--ATGG-----GA--TAC----CTCCCATAAACCTTTC-TTTAGAGTGT-TTAATTTG-----ATGAAATCT-C-TA---AGTGA---ACACTACAA------------------A-----------CA--GT-------------TTAGGCCATCACT-ATTTATTTCAGAAGGCATTCTAAGTTTT-GCTGTGC-AAAA
gi|10 : gtattaagaagtgttcatgaaaatctatgacaagggtttaaaattgtcattttgaatgtaatatgattttgaaaaccatacgatgtgctttccccgtcaaggagatttttcataaagatctaactaattgtacaatccatggagctgccatattgataaattaATTACCTCCCT--GCT-AGGT----T-AT-CTCT-----AGCAT-CTACCAGAGGT-C---A-GCA-CTGTATGCTG-ACG--T-CAGTTGGGCCA--CAT-GC--ATTTTTGGCACA--------TT------------------------CT-CTTAGTA--ACAC----AATGTGAA--AATG--TCA-A--CATCAGAA-A-TGAACT--A-AATAATGAG-AC-CGAA-AC-TG----AA-GTATTT-GG-ATA---TGAATTTGAA-CCA-GAGTTT-TAC-AGAGA-AGGAA----AA-TAG-T-TTCC---AAATTA-GTGTTT-CCT-CACCA-GAAACTGgaataagttatttctatgaacacttcc
gi|11 : taaaggaagtgttctgaaaatatgaacaaaggtttttaaaattgttcatttgatgtatataatgaattttgaaaatcatacaagatgtagctttcttcagtaaggagatatttcataaagattaactaatttttacaatccatggaagctgccatatgaataaaatC-AT-CACACAAAGTGTATT-TCTCTA-CAT-CCTG--AC-----------------------T-TTGA------------CCTTGA----CAGCTTA-----ATT-A-CTATCTCG--TACAAAAAGCTCACAGAGG-AATTC-GGAAGAGCCCCAGAGCACTTACAT--C--A-GAAGTATAAA--AAAACC--------AC-AAA-----------------T----T-ATCTGCCTTGT--A-TT-A-TCAACA-TTCT-AAA------CA-TAAGCAT-TCCATTTG-TGTTT----ACA-AACATTTTCAACA-TT-CACA-TA-G-----TAATT-G--GATACATT-------TCTGTTTGC-AAGACC---A-TCA-G-ATTTATGGCT-TACA-CA-ACAAA-TCAT
gi|12 : -ATGCTT-CCT-GACCA-GCAACTGACT-TTAA-TG--AGA-GA--GTAATT-TCTAT-GG-ATTGGTATGG-TTGT-AAATAT-TGTTCAA-T-TT-TACCTACA-TTCAAG-GAG-TG-TC-TCTGTTGT-CATGAGT--TT----------------------------ATATAAAC-ATGCACACAAAGTGTATT-TCTCTA-CAT-CCTG--ACTGTGAC---ACA----GTGTGTGT-CTAAGTCCTGT-TAT-CCTTGAAACACAGCTAGCTTACATT-ATCTATCTCAGGTACGAAA-GC-CAGAGAGG-aac
gi|14 : gT--A--A-CAAGTA-AGT--AAAAC---------AC-AAAC-A-AAAATGAAAAATAT-----------C--TGT--G-TTCA-T-----------AAA--------------AT-GCCAATTG-TGTGT----A---AACATTTCCA-CG-CA-TACC-TATG-----TGATA-G--AACACAAT-------TCTGTT-TG-A-TACA---A-TCAAG-AGTTATGGCG-T--A-CAGAT-AATTCATcagaacactt
gi|15 : ATTACCTCCCT--GCT-GGGT----T-AT-CTCC---T-AGCAT-CTAGAAGACAG-C---A-GCA-CTA-ATGTTG-ACG--T-CAGTAAG-AAA--CG-TAT--ATTTT-GGCACG--------
gi|16 : tctttcaatccttgggagctgccatattgataaattgTAAT-G-----GA--TAC----CCTCCATAAACCTTTCAATTAG--TGT-TTAA-TTG-----ATGAAATCTCT-TA---AGAGA---A----ACAT------------------AGTTTTTAGCCTCA--CTA------------TT----------T-AT---TTTCAGAAGGCATTCTAAG-TTT-GCTGTGC-AAAAATATTTgtgaacagtatcaacgcttatta
gi|18 : A--TT-------AT-C-------AGACTC-G-A-A-TAA-G---A-C-TTTCA--TT--AAAC-------------------TG-C-------A---------TCACC-ATCAAACAT-----CAGTC-TATCA--TGGTC--------C--AATTTGAACAGAAT------AT---------A-T-CA----------A-TGTA-T-A-AA--TATGT-----ATGATAATAA-A-ttttcatgaacacttc
gi|19 : AAA--TGCT---TA--TTTG--AA-AT-AAT-G-----GA--TTG----CCTCCATAAAACTTTCACTTGGAGTCT-TTGA-TTG-----ATCATATCTTG-TA---ATAGA---A----ACAA------------------G-----------CA--c
gi|2 : tTTACCTCCCT--GCCGAGGTCTTAT-ATACTCCTCGTGAATCT-CTACCAGAGGT-CGCGA-GCA------TGTTC-AGGATT-GGGTCAA-CCATTCGTTGCTTAGTTT-GGTACGCATTGTTATT-TACCACGGAGACTA-CCTTTCA-CTTCTTGCCA-CCCACTCTAG--GTGGATAAATG--TCACA--CATCACAG-ATTGAACT--A-AATAATGAA-ACGAG-A-AC-TGCAT-AG-GTATTT-GA-ATA---T-AGTTTGA--CCACGAG-TT-TAC-AGAGGCAAG-GGCAGAA-TTGATGTTCCC-AGGATTC-ATGCTT-CTTACGCAA-GAAA-TGACT-TTAAATG--AGATGA--GGATCT-TTTCT-GG-ATTGTTGTGC-TTGTTGGAAATGTTTTCAA-T-TT-TACCTA-A-TTCAAG-GAT-TA-TT-TCTGTTGT-CATGAGTCCTTGGACCA-T-ATGGTTTTTTGG-ATT---ATATAAAC-ATG-ACACAAAGTGCATTATCCCTA-CATCCCTGTTACTTG-AC---ACA----GTGTGTGTACTAAGTCCT-T-TATCCCTTGG---ACTAC--G--TACATT-ATCTATCTCGAA-ACAAAA-GC-CAC-GAGG-A-----AGGGGAGTCCCAGA-CACTTACAT--A--AGCAAGTA-AGA--AACAC---------AC-AACCAA-AAAGTGGAAAA-AA----T-ATCTGC--TGT--A-TT---TCAAAT-T-CT-AAAACTTAGCAGTG-GCAT-GCTATTT--TGTGT----ACGTAACATTTCCA-CA-TT-CACCGCATT-----CAATG-GGAGACACATT-------TCTGTT-GCAA-GACA---G-TCAAACGTTTATGGCCGCACATCAGACAAATTC--------------TAGATGTGGTCAGCCTCTG-G-----------GG----------GAAT-------AATTCAGAT--TACCCTCAATTGTGTTGTG-ACTGAAATAAGGAAAA--ATTTTGGAT-AATGAA-GATG-ACAAA--TT-------AC-C-------CAACTCTGGACA-TAA-GTA-ATC-TTTCA--AT--AGACA-AA-TGTTAATGAAT-ATTG-T-------AG--------TCACT-C---AACATTATTCCAGTC-TAT-A--TGGTC--------C--A-------------------AT-------TGGTT-CACTGCAACAACA-TGTA-T-ATAG--T-TTTACATAATGATAATAAGA-GC----AGTAC-T-TTAAT--TAT-AT------TGAC-A--GCAATCTTGAT-TTTCTCC---AAGATA-A-TTAA------TA-CAATTGTA-TATT-TCTAA--TGCA-T--TGGAACCTTTGAAATAT---A-G-CT-GCT-T-AAATCTCAGGA-CATC---TT--A-CGTTG--CCGTAACGCGTGTAACAG-GACCC-TGAAACTCTCCAGCAGCTAAA-T-T-----GAC-C-A-TCT---TA-CTGT-CAGA-----A-ACAAG--TGaattggctttag
gi|20 : acaatccatgggagtgaggctcgcatcatctttagataacaattaatGA---A----ACAAGTGCA-------------A-----------CA--CA-------------TT----------T-AT---TTTCATCAGCC-TTCTAAG-TTTTGCTGTGCAAAAAATAGT
gi|21 : -GG-ATA---TCAGTTCAAA-TCT-GAGCTT-TAC-AGAGA-AAA-A----AA-TCG---TTCTC-AT-ACTG-ATGCTT-CTT-CACCA-ACAATTGA-T-TTAA-CG--AAA-GG--GGGATT-Tctttttcatgacacttcctttaacgaaattgtct
gi|22 : -ATGCTC-TCC-CACCA-GCGACTGACT-TTAA-TG--AGA-GA--GGACTT-TCTCG-GG-ATTCGTGTGC-TTGTG-AAAAT-TGTTCAA-TGTC-TACt
gi|23 : -ATGCTT-TCC-CACCA-GCGACTGACT-TTAA-TG---GA-GA--GGACTT-TCTCG-GG-ATTCGTGTGC-TTGTG-AAAAT-TGTTCAA-TGTC-TACtc
gi|24 : A--CT-------------AT----------T-AT---TTTCAGAAGGCATTCTAAG--TT-G-TGTGC-AAAAATATTTtc
gi|25 : cataaacagtttttcaagcctca-TT-AACCTACA-TTCAAG-GAG-TG-TT-TTTGTTGT-TATGAGT--TT-GAATATT-ATtttttcatgaacact
gi|26 : ACT--A-AATAGTGAG-AC-AG-A-AG-TA----CATGTATTT-GG-ATA---CCAG
gi|27 : ATT-------TCTGTT-GC-A-GACA---A-TCAAG-ATTTATGGCC-CACA-CAGACaa
gi|3 : CATTACCTCCCT--GCT-AGGC----T-AT-CTCTTAATTAACAT-CTACCAGAGGT-C---A-GCA-CTG-ATGCTG-ACG--T-CAGTTGG-TCA--CATTGC--ATTTT-GGCACA--------TTATAC----------AGCA--TCAACT-CTTATTA--ACAC----A--GTGAC--AATG--TCA-A--CATCAGAA-AGTGGACT--A-AATAATGAG-AC-AG-A-AC-TG----AA-GTATTT-GG-ATA---TCAGTATGAA-CCA-GAG-TT-TAC-AGAGG-AAG-A----AA-TTG-T-TTCCC-AGAATTATATGCTT-CCT-CATCA-GAAACTGACT-TTAA-TG--AGA-GA--GGACTT-TCTCT-GG-ATTGTTGTGC-TTGTGAAAAAT-TGTTCAA-T-TT-TACCTATA-TTCAAG-GAG-TG-GC-TCTGTTGT-CATGAGT--TT-GACCATT-ATG---TTTTGG-ATT---ATATAAAC-ATGCACACAAAGTGCATT-TCTCTA----------------------ACA----GCGTGTGT-TTAAGTCCTGT-TAT-ACTTGAT--ACAGCTTA--TACATT-ATCTATCTTGGGTACAAAA-CC-CAGAAAGGAA-TT----AAGAGCTCCATAGCACTTACAT--A--A-CAAGTA-AGA--AAAAC---------AC-AAAC-A-AAAGTGGAAAACATACAGT-ATCTGC--TGT--A-TTTA-TCAAAA-T-CA-AAA------CA-TA-GCAA-GCCATTTG-TGTGT----A---AACATTTCCA-CA-TT-CACCTTATG-----TAATA-G------CATT-------TCTGCT-GC-G-GACA---T-TCAAG-ATTTATGGCT-TACA-CAGACAAATTCATTAATAT-TGGGTCAGATGTGGTCAG------------------------------------------AGT--AG-TTATACCCTCA--TGTGTTGTG-ATGGAAATAAAGAAAA-CATTTT--AT-GATGAA-GATG-ACAAA--TT-------AT-C-------AGACTC-CGA-A-TAA-GTT-ATC-TTTCA--AT--AGACA-AA-CGT-------T-ATTG-T-------A---------TCACC-A---AACATTAT--CAGTC-TAT-A--TGGTC--------C--A-------------------A--------TAA-T-CA----------G-TGTA-T-A-AA--T-TGT-----ATGATAATAA-A-GA----AGTAC-T-T--AT--TAT-CT------T-AC-A--GCAATCTTGTT-TATTTCC---AA-ATA-T-TTAA------TA-CA--TGTA-TA-T-TCTAA--TTGA-T--T-GAATC-TTGAAATAT---GTG-TTAA-T-TAACAT-TCA-GA-CATCT--TT--ATCG-TG--CACTAAC-TGTGTAACAGTGACCC-TG--AGTCTCTAGCAGC--AA-TGT-----GAC-C-ATT-T---TA-C-GT-CAGA-----ACACATA--TGTA---TG--CTGG--GA-ATTAAT-G-----GA--TAC----CCTCCATAAACCTTTCATTTAGAGTGT-TTAA-TTG-----ATGAAATCTCC-TA---TGAGA---A----ACAA------------------A------------------------------------------T-AT---TTTCAGAAGTCCTTCTAAG-TTT-GCTGTGC--AAGATAGTT
gi|4 : atTGA-ATT---TTATAAAC-ATGCACACAAAGTACGTT-TCTC---CAT-CCTG--ATTTTGAC---ACA----GTATGTGT-CTAAGTCCTGT-TAT-CATAGAG--ACAGCTTG----CATT-ATCTATATCGGGTATAAAA-GC-CACAGAG-----------------------CACTTACGT--A--T-CAAGTA-AGA--AAAAC---------AC-AAAC-A-AAAGGTGAAAATAT------ATCTGC--TGT--A-TTTA-TCAAAT-T-CT-AAA------CA-TA-GCAT-GTCATTTG-TGTGT----A---AACATTTTCA-CA-TT-CACC-TATG-----TAATA-G--GACACATT-------TCTGTT-GC-A-GACA---A-TCAAG-ATTTATGGAT-TACA-CAGAAAGAATCATTA--AT-TGGGTCAGATGCGGTCAGCCTCTG-G-----------GG----------G---------------AA-A--TACCCTCA--TGTGTTGTG-ATGCAAATAAGGAACA-CCTTTT--AT-GATGAA-GATG-AACAA--TT-------AT-C-------AGATTC-GAA-A-TAA-GTA-ATC-TTTCA--AT--AGACA-AA-TGT-------T-ATTG-TATATTGCA---------TCACC-A---AATATTAT--CAGTC-TAT-A--TGGTC--------C--AAT----------T------GTTCATCAATAA-T-CA----------A-TGTA-T-A-AA--T-TGT-----ATGATAATAA-A-GC----AGTAC-T-T--TA--TAT-CTATATGAT-AC-A--GTAATCTTGTT-CATTTCC---AA-ATA-T-TTAATATATGTA-CG--TGTA-TA-T-TCTAA--TTGA-T--T-GAATC-TTGAAATAT---GTG-TT-A-----ACAT-TCA-GA-CATCT--TT--ATCG-TG--CACTAGC-TGTGTAACAGTGACCCTT---AGTCTCCAGCAGC--AA-TGT-----GGC-CAA-T-T---TA-C-GT-CTGA-----ACACAGA--TGCA---TG--CTGG--GA-ATTAAT-G-----GA--TAC----CCTCCATAAACCTTTCATTCAGAGTGT-TTAA-TTG-----ATGAAATCTCC-TC---AGAGA---A----ACAA------------------A-----------CAAGCTTTTAGCCTCACTATT----------T-AT---TTTCAGAAGGCCTTCGAAG-TTT-GCTGTGC-AAAAATAGTT
gi|5 : CATTACCTTCCTTTGCT-AGGT----A-TT-TTCTTAG---GCATTCTACACGAGGTGC---AAGCAACTG-ATGCTG-ACG--TATGGTTTG-CCA--TAT--C--ATTT--GGCACA--------TTCTAC-------------------------TAGTA-CACAC----A--GTGAA--AATAGCTCA-ATGCATCAGAACAGTGAACT--AGAATAACGAG-AC-AG-ATACGTGTAGTGA-GTATTTTGGCATA---TGAATTTGAA-CCA-GAGCTT-TACCAGAG--AAG-A----AACTTG-T-TCCCCGAGAATTA-GTG--T-CCT-TACCATGAAACTGACTGTTAA-TGTCAGA-GA--GAATTTGTCTCTTGG-ATTGTTGAGC-TTGTAAAAAAT-TGTTCAAAT-TT-TACCTACA-TTCAAG-AAGGTGCTC-TCTGTTGT-CATGATA--GT-GACCCAT-AAG---TTTTGGCATTCAGA-ATAAGCCATGCACACAAAGTGTATT-TCTCTA-CAT-CCTG--AC----ttttcatgaacactaccttta
gi|6 : attaaaggaagtgttcatgaaaatatgttatacaacttagggcctttaaatatgtcgtcatttttgcatttgtatattaatgaatttttgataatcattacaagtagctttcctccagtaataatatctatgaaagattagtagctaattttacaattccatggaaagctccatattgataataagAT-GCCATTTG-TGTGT----A---AACATTTCAA--A-TAACACA-AACA-----TGATA-G--GGTATAGTAACAA--T-TAAT-GC-A-GACATGCACTCAAC-ATTTATGGC---ATA-AAGACAG-TTTATCA--AC-TGGGTCAGACGAGGTCAGCATCTT-A-----------GA----------G--TGAGCTAGAGT--AG-TTCTACTCTCA------TTGTG-ACAAAAGTTAGAGAGG-CATTTC--CT-GATGAATGCTG--C-AA--TT--------T-C-------TGAAT------A-TAATGTATTTT-TTTCAGTAT--AAATA-AACTGTA------A-ATTG-C-------A---------TCACC-A---AA-ATT-C--CTGT--TAA-A-----TC--------C--A------------T------GT--------------A----------C-TGTACT-A-CA--T-CA------ATCATAATCA-A-AC------------T--GT--TAT-AT------G-AC-ACGGTGACC-----------CC---AA-TTA-TATTCA------CACCA--TATA-AA-A-TC-AG--TTGA-TTAT-GAATC-CTGAAATATACAGTGCTT-G-TGT-ACAT-TGA-GA-ttttgaactcagtgcgagtgt
gi|6 : TGCAA-AGTAACCC-----AGTTACCAACAGC--AA-TGT-----GTCTC-A-T-C---TA-C-AT-CAAA-----GCACAGT--TGCA---TG--CTGG--GA-AATAAT-G-----GA--TGCATGACCTTCATAAACCTTTCATTTAGAagttggaggagctcatgcaagagatttttttcttccttgatggtgcattgtttcaattctttcaatttgcacaaaaaccttatccatgaattctaatataaatccattatcttctgctgcaaagtaacccagttaccaacagcaatgtgtctcatctacatcaaagcacagttgcatgctgggaaataatggatgcatgaccttcataaacctttcatttaga
gi|7 : atgccatttgtgtgtaaacatttcaaataacacaaacatgatagggtatagtaacaattaatgcagacatgcactcaacatttatggcataaagacagtttatcaactgggtcagacgaggtcagcatcttagagtgagctagagtagttctactctcattgtgacaaaagttagagaggcatttcctgatgaatgctgcaatttctgaatataatgtatttttttcagtataaataaactgtaaattgcatcaccaaaattcctgttaaatccatgtactgtactacatcaatcataatcaaactgttatatgacacggtgaccccaattatattcacaccatataaaatcagttgattatgaatcctgaaatatacagtgcttgtgtacattgagaagttggaggagctcatgcaagagatttttttcttccttgatggtgcattgtttcaattctttcaatttgcacaaaaaccttatccatgaattctaatataaatccattatcttctgcC-AAAC-A-AAA-TGGAAAAT------T-AT-TGC--TGT--AATTTAATCAAAA-T-TT-AAA------CA--A-TCATTGCAATTTG-TGTGTTTACA---AACATT--CA-C--TT-CAC--TATG-----TACTACG--GACACATTGTACATTTCTGTT-GC-A-GACA-----TCAAG-ATGTATGGCT-TACA--AGACAATTTCATTA--AT-TGGGTCAGATGTGGTCAGCCTCTG-G-----------GAAAATTCAGATG--T-------AGTC-AG-T--TACTC-----TGTGTTGTGCATGG-ATTAAGGAAAA-CATTTT--AT-GATGAA-GATGAACAAAATTT-------AT-C-------AGACTC-AGA-ATTAA-GTA-ATC-TTTC---AT--AGACA-AA-TGT-------T-ATTG-T-------ATAATTGCAGTCACCTC---AAC---AT--CAGTC-TAT-A--TGGT---------C--A------------TTGAAAAATTA-----TAA-TACC----------A-TG-A-TAA-AA--T-TGTTA---ATGATAATAA------------GC-T-T--A-----------------AC-A--GCAAT-TTGTT-TATTTCC----A-ATATT-TTAA------TA-CA--T-TA-TA-TATTTAATTTTAA-T--T-GAATCTTTGAAA-------------------------CA-GACCATCT--TTAAATCG-TGGCCACTAGCTTGCGTAAC-------------AGTCTCCAGCAGC--AATTGT-----GGC-C-A-T-T---TA---GT-CAGA-----ACACAAA--TGCA---TG--CT-G--GA-ATTAAT-G-----GA--TA-----GCTCCAT-ACCCTTTCATTTAGAGTGC-TTAA-TTG------TGAAATCT
gi|8 : GGGTCAGACCTAGTCGGCCTCTGCG-----------GA----------A--A-------A-----------AACCTCA--TGTGTTGTG-ATGAAAATAAGGGAAATCATTTC--CC-GATGAA-GATG-GCAAA--TTCGGAGGAAT-TTTCTAATAGAATC-GGA-A-TAA-GTA-ATC-TTTCA--GTGCAAACA-AT-TGT-------T-ATCG-T-------AAATTGAT--TTACC-A---AAATTTAT--CAGTC-TAC-A--TGCTC--------C--A------------T------GTATATCTATAA-T-CA----------A-TGTA-T-A-AA--T-TGT-----ATGACAATAC-A-GC----AGTATGT-T--ATAATAT-CT------T-TT-A--GCAATCTTGTT-TATTTCG---AG-ACA-T-CTAA------TA-CA--T-----A-T-TCTAA--CTGA-T--T-------TTG-----T---GTT-TT-G-----GCAT-TCA-GG-CATCTCTTT--ATCA-TG--CACTAAT-TATGTAACAGTGACCC-A---AA-CTACAGCAGC--AA-TGA-----GTC-T-AAT-T---TA-C-GT-CAGA-----ACACAGA--TGCA---TG--CTGG--GA-ATTCAT-G-----GA---AC----CTTCCATAAACC-------------GT-TTAA-TTG-----ATGACATTTCC-TA---GGAGA---A----ACGAACAAACAAGTTCTTAGCCA-----------CA--CT-------------TT----------TAAT---TTTTAGAAGAC---CT-AG-TTT-
gi|9 : AAA--TTT------ATAC-------AGGACC-GGAGA-TAA-GTA-ATC-TTTCA--ATA-AGACATAA-TGT-------TAATTGATACATGCGA---------TCACC-A---AAC---AT--CAGT--TATAA--TGGTCAATTTTGACGAA------------T------ATAA-----TAA-T-CA----------A-TGTA-T-G-AAGGT-TGT-----AT-ATAATCA-A-CCTTAGAGTCC-TCT--AT--T--------------C-A--G-----TTCTT-TATTTCttcatcctaaagtgtttttttttcatgaacacttaatttagtttttgt
gi|9 : aaCC-C---AGTGCTCATTGGC--AA-TGTTTTGAGGC-C-A-T-TATTTAAC-GTACAGACTTTGACACAGAATTACAGATTGACTTGGTAGACATTAAT-GTTAACGAGCTAC----CT--CATAATCTTCTAATTTAGAGTGTATTAA-TTGAATGCATAAAATCTCTGTAATCAGAGACTTA----ACAA------------------A-----------tgattagggcagccctatcttgtgttatccattaatccaaatagttctttccccaagataattttatacattggggcatgagtagtattcttgaaatatgtcatcatggtgtgaacaaatttcaagaggcggattctcttttcgtgtcatctaggactttcgattgtatgttcacatgttttttagcggccttcgataatcattcccagtgctcattggcaatgttttgaggccattatttaacgtacagactttgacacagaattacagattgacttggtagacattaatgttaacgagctacctcataatcttctaatttagagtgtattaattgaatgcataaaatctctgtaatcagagacttaacaaa
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|13 ): TTTAAAGTAGGTGTTCATGAAAATATGACAAAGGGTTTAAAATTGTCATTTTGATGTATATAATGAATTCTGAAAATAATAAAGATGTAGCTTTCTTCAGTAAGGAGATATCTTATAAAGATTAACAAATCTTTACAATCCATCGAACT
Unaligned ( gi|17 ): AGGAAGTGTTCATGAAAATATGACAAATGGTTTAAAGTATATAATGCTCTTTGAATATCATAGAGATATAGCTTCCTTCGGTAAGGACATATTTCATACGACAAACAAATCTTTACAATCC
Alignments
lowQualScore : 11111111111111111111111111111111111 11111111111111111111111111111111111111111111111 1111111111111111111111111111111111111111111111111111111111 1111111111111111111111111111111111111111111111111111111111111
lowQualScore : 111111 1 33333 111 33333333333333333333333333333333333 11 3333333 11 11 11 2222 111 1 11 111111 1 111 22 1 111 111 5555555555 1111 2222 333333 33333333 1111111 333333333 222222222 2222222222222 22222222 11 1111111 2222222 11111 00000000000000000000000000000000000000000000000 1111111 1111111 11 55555555555555555555555555555555 11111111 0000000000000000000000000000000000000000000000000000000000 22222 11111 3333333333333333333333 111 111111 111 1 4444444444444444444 11 22222 11111 1111111 11111 11 11111 11111 111 1111 1111111111111111111111111111111111111111111111111111111111111 111 1
lowQualScore : 99 6 666666 3 88888 6 99 111 6 6 6 6 99 6 0 4 6 99 0 7 99 6 88888888888888888888888888888888888 8 88 1111111 11 11 8 11 8 5 99 6 6 99 6 6 6 5555 6 5 5 000 6 6 6 2 6 6 00 444444 3 222 6 1 8 4 4 4 1 5 5 66 5 66 1 5 5 5 1 5 00 5 5 0 5 1 6 6 6 6 6 6 99 77 999 444 6 3 111 3 5 5 5 5 77 0000000000 2222 5 3 2 6 6 2 6666 000000 6 1 7 6 6 77777777 5 5555555 6 99 333333333 5 555 44 1 999999999 0 77 77 5 777 7777 5 5555555555555 5 5 77777777 5555 5 22 2222222 5 777 5555555 4 4 4 33333 4 66 4 0 00 0 99 6 1 00000000000000000000000000000000000000000000000 5 999 5 1 66 5 999 5 5 6666 66 8888888 4 4444444 0 4 0 8 4 4 4 4 66 00 4 4 99999999999999999999999999999999 88888 00000000 55 8 66 1111111111111111111111111111111111111111111111111111111111 4 4 4 4 66 4 11111 555 00000 5 0000000000000000000000 5 66 0 5 000 5 666 666666 5 77 6 5 111 77 5 77 5 1 8888888888888888888 5 5 5 99 99 6 99 44 0 0 44 77777 66 5 22222 0 5 5 0000000 666 5 22222 66 888 11 5 66 5 1 4 11111 66 9999 5 5 22222 5 000 888 0000 4444444444444444444444444444444444444444444444444444444444444 5 000 1 5 5 6
lowQualScore : .. . ...... . ..... . .. ... . . . . .. . . . . .. . . .. . ................................... . .. ....... .. .. . .. . . .. . . .. . . . .... . . . ... . . . . . . .. ...... . ... . . . . . . . . . .. . .. . . . . . . .. . . . . . . . . . . . .. .. ... ... . . ... . . . . . .. .......... .... . . . . . . .... ...... . . . . . ........ . ....... . .. ......... . ... .. . ......... . .. .. . ... .... . ............. . . ........ .... . .. ....... . ... ....... . . . ..... . .. . . .. . .. . . ............................................... . ... . . .. . ... . . .... .. ....... . ....... . . . . . . . . .. .. . . ................................ ..... ........ .. . .. .......................................................... . . . . .. . ..... ... ..... . ...................... . .. . . ... . ... ...... . .. . . ... .. . .. . . ................... . . . .. .. . .. .. . . .. ..... .. . ..... . . . ....... ... . ..... .. ... .. . .. . . . ..... .. .... . . ..... . ... ... .... ............................................................. . ... . . . .
lowQualScore : 22 7 222222 3 55555 7 88 777 7 7 7 7 22 7 7 8 7 22 7 3 22 7 22222222222222222222222222222222222 0 00 8888888 00 00 0 00 0 0 22 7 7 88 7 7 7 8888 7 7 7 000 6 7 7 0 7 7 33 333333 3 555 7 7 9 4 4 4 7 0 0 99 0 99 0 0 7 7 3 7 77 7 7 0 0 0 7 7 7 7 7 7 22 77 222 000 7 2 777 2 7 7 7 7 99 3333333333 1111 7 2 5 7 7 5 7777 777777 7 0 3 7 7 99999999 0 3333333 7 22 333333333 7 999 66 4 444444444 7 99 99 7 333 7777 7 1111111111111 0 0 99999999 2222 0 55 8888888 0 111 6666666 4 4 4 22222 4 99 4 1 88 1 22 7 4 11111111111111111111111111111111111111111111111 0 333 7 4 77 7 444 7 7 7777 11 9999999 4 4444444 1 4 1 9 4 4 4 4 11 66 4 4 77777777777777777777777777777777 66666 77777777 66 9 11 2222222222222222222222222222222222222222222222222222222222 4 4 4 4 11 4 77777 333 88888 0 4444444444444444444444 0 99 2 0 000 7 111 444444 7 99 6 7 999 99 7 99 7 4 7777777777777777777 7 7 7 22 22 7 22 00 1 7 44 00000 99 0 55555 2 0 0 9999999 222 0 55555 11 888 99 6 99 0 9 4 11111 11 4444 0 0 55555 7 000 888 6666 0000000000000000000000000000000000000000000000000000000000000 7 000 9 7 7 7
consensus : NNCATTACCTCCCT--GCT-AGGT----T-AT-CTCTTAGT-AGCAT-CTACCAGAGGT-C---A-GCA-CTG-ATGCTG-ACG--T-CGGTCGG-CCA--CGTTGC--ATTTT-GGCACG--------TT-TAC----------A-C---TCA-CT-CTTAGTA-CACAC----A--GTGAA--AATG--TCA-A--CATCAGAA-AGTGAACT--A-AATAATGAG-AC-AG-A-AC-TG----AA-GTATTT-GG-ATA---TNAGTTTGAA-CCA-GAGCTT-TAC-AGAGG-AAG-A----AA-TTG-T-TTCCC-AGAATTA-ATGCTT-CCT-CACCA-GAAACTGACT-TTAA-TG--AGA-GA--GGANTT-TCTCT-GG-ATTGTTGTGC-TTGTGAAAAAT-TGTTCAA-T-TT-TACCTACA-TTCAAG-GAG-TG-TC-TCTGTTGT-CATGAGT--TT-GACCATT-ATG---TTTTGG-ATT---ATATAAAC-ATGCACACAAAGTGCATT-TCTCTA-CAT-CCTG--AC--TTT---ACACA----GTGTGTGT-CTAAGTCCTGT-TAT-CCTTGA---ACAGCTTG--TACATT-ATCTATCTCGGGTACAAAA-GC-CACAGAGG-A-TTC-GGAAGAGCCCCAGAGCACTTACAT--A--A-CAAGTA-AGA--AAAAC---------AC-AAAC-A-AAAGTGGAAAATAT----T-ATCTGC--TGT--A-TTTA-TCAAAA-T-CT-AAA------CA-TA-GCAT-GCCATTTG-TGTGT----A---AACATTTCCA-CA-TT-CACC-TATG-----TAATA-G--GACACATT-------TCTGTT-GC-A-GACA---A-TCAAG-ATTTATGGCT-TACA-CAGACAAATTCATTA--AT-TGGGTCAGACGTGGTCAGCCTCTG-G-----------GA----------G--T-------AGT--AG-T--TACCCTCA--TGTGTTGTG-ACGGAAATAAGGAAAA-CATTTT--AT-GATGAA-GATG-ACAAA--TT-------AT-C-------AGACTC-GGA-A-TAA-GTA-ATC-TTTCA--AT--AGACA-AA-TGT-------T-ATTG-T-------A---------TCACC-A---AACATTAT--CAGTC-TAT-A--TGGTC--------C--A------------T------AT-------TAA-T-CA----------A-TGTA-T-A-AA--T-TGT-----ATGATAATAA-A-GC----AGTAC-T-T--AT--TAT-CT------T-AC-A--GCAATCTTGTT-TATTTCC---AA-ATA-T-TTAA------TA-CA--TGTA-TA-T-TCTAA--TTGA-T--T-GAATC-TTGAAATAT---GTG-TT-G-T-T-ACAT-TCA-GA-CATCT--TT--ATCG-TG--CACTAGC-CGTGTAACAGTGACCC-T---AGTCTCCAGCAGC--AA-TGT-----GGC-C-A-T-T---TA-C-GT-CAGA-----ACACAGA--TGCA---TG--CTGG--GA-ATTAAT-G-----GA--TAC----CCTCCATAAACCTTTCATTTAGAGTGT-TTAA-TTG-----ATGAAATCTCC-TA---AGAGA---A----ACAA------------------A-----------CA--CT-------------TT----------T-AT---TTTCAGAAGGCATTCTAAG-TTT-GCTGTGC-AAAAATAGTT
Reference ( family-366 ) : NNCATTACCTCCCT--GCT-AGGT----T-AT-CTCTTAGT-AGCAT-CTACCAGAGGT-C---A-GCA-CTG-ATGCTG-ACG--T-CGGTCGG-CCA--CGTTGC--ATTTT-GGCACG--------TT-TAC----------A-C---TCA-CT-CTTAGTA-CACAC----A--GTGAA--AATG--TCA-A--CATCAGAA-AGTGAACT--A-AATAATGAG-AC-AG-A-AC-TG----AA-GTATTT-GG-ATA---TNAGTTTGAA-CCA-GAGCTT-TAC-AGAGG-AAG-A----AA-TTG-T-TTCCC-AGAATTA-ATGCTT-CCT-CACCA-GAAACTGACT-TTAA-TG--AGA-GA--GGANTT-TCTCT-GG-ATTGTTGTGC-TTGTGAAAAAT-TGTTCAA-T-TT-TACCTACA-TTCAAG-GAG-TG-TC-TCTGTTGT-CATGAGT--TT-GACCATT-ATG---TTTTGG-ATT---ATATAAAC-ATGCACACAAAGTGCATT-TCTCTA-CAT-CCTG--AC--T-----ACACA----GTGTGTGT-CTAAGTCCTGT-TAT-CCTTGA---ACAGCTTG--TACATT-ATCTATCTCGGGTACAAAA-GC-CACAGAGG-A-TTC-GGAAGAGCCCCAGAGCACTTACAT--A--A-CAAGTA-AGA--AAAAC---------AC-AAAC-A-AAAGTGGAAAATAT----T-ATCTGC--TGT--A-TTTA-TCAAAA-T-CT-AAA------CA-TA-GCAT-GCCATTTG-TGTGT----A---AACATTTCCA-CA-TT-CACC-TATG-----TAATA-G--GACACATT-------TCTGTT-GC-A-GACA---A-TCAAG-ATTTATGGCT-TACA-CAGACAAATTCATTA--AT-TGGGTCAGACGTGGTCAGCCTCTG-G-----------GA----------G--T-------AGT--AG-T--TACCCTCA--TGTGTTGTG-ACGGAAATAAGGAAAA-CATTTT--AT-GATGAA-GATG-ACAAA--TT-------AT-C-------AGACTC-GGA-A-TAA-GTA-ATC-TTTCA--AT--AGACA-AA-TGT-------T-ATTG-T-------A---------TCACC-A---AACATTAT--CAGTC-TAT-A--TGGTC--------C--A------------T------AT-------TAA-T-CA----------A-TGTA-T-A-AA--T-TGT-----ATGATAATAA-A-GC----AGTAC-T-T--AT--TAT-CT------T-AC-A--GCAATCTTGTT-TATTTCC---AA-ATA-T-TTAA------TA-CA--TGTA-TA-T-TCTAA--TTGA-T--T-GAATC-TTGAAATAT---GTG-TT-G-T-T-ACAT-TCA-GA-CATCT--TT--ATCG-TG--CACTAGC-CGTGTAACAGTGACCC-T---AGTCTCCAGCAGC--AA-TGT-----GGC-C-A-T-T---TA-C-GT-CAGA-----ACACAGA--TGCA---TG--CTGG--GA-ATTAAT-G-----GA--TAC----CCTCCATAAACCTTTCATTTAGAGTGT-TTAA-TTG-----ATGAAATCTCC-TA---AGAGA---A----ACAA------------------A-----------CA--CT-------------TT----------T-AT---TTTCAGAAGGCATTCTAAG-TTT-GCTGTGC-AAAAATAGTT
gi|1 : ATTACC--CCT--TCT-AGGT----TTATTCTCTTGG-----AT-CTCCCAGAGG--C---A-GCA-CTG-ATGCTGGACG--T-CA-TTGG-CCA--CATTGC---TTTT-G-CACA--------TT------------------------CT-CTTAGTAACACAC-------GTGAA--AACG--TCA-A--CATCAGAA-AGTGAACCTAA-AATACTGAGGAC--G-A-AC-TG----AA-GTATTT-GG-ATACTATAAATTTGAATCCA-GAGTTTATAC--GAGG-AAG-A----AAATTG-T-TTTCC-AGAATTATATATTTTCCT-CACCA-GAAACTGACT-TTAA-TG--AGA--ATTGAAATT-TCTAT-GGAATTATTGAGCTTTGTT-AAAAT-TGTTCAA-T-TTATACC-ACATTTCAAGAAAG-TG-TTATCTGTTGTCCATGAGT--TT-AACCATTGATG---TTTTGG-A-T---AGATAGAC-ATACACACAAAG-GTATT-TCTGTAGCAT-CCTG--ACGTT-----TGACAACGTGTGTGTGT-CT-AGTCCTGTGCAG-C--TG----ACAGC------ACATTAATCTATCTCCGG-ACAAAA-GC-CACAGAGG-A-TTCGGGAAGAGCCCCAGAGCACTCACATTCAGTA-GAGGCA-TGACGAAAACGAAATGAGAACTAGAC-ATAAAGAAGAA---AT----TGATCTGC--TGCTGA-TTTA-TCAAAATT-CTAAAA------CA-T---TAT-G-CACTTGTTGTGTTTCAA---AACATGTCCA-CAGTT-CACC-TA-GTCAATTAATG-G--AACACATT-------TCTGTT-GC-A-GACA---A-TCAAG-AATTATGGCT-TACA-CAGACCAATTCA-TA--ATGTGCGT-AGATGTGGTCA-CCTCTG-GGGAAAATTCAAGA----------G--T-------AGTG-AA-T--TACTC-------TGTTGTG-ATG--AATAATGAAAA-CATTTT--TTAGATGAA-GATG-A-AAA--TT-------AT-C-------AGACTC-GGA-A-TAA--TA-ATCTTTTCA--AT--AGACA-AA-TGTTATGTA-T-ATTG-C-------A---------TCACC-A---AACATCA----GGTCTTAT-GATTGGTT--------C--A------------TGAAA--ATTAA----TAA-T-CA----------ATTGTA-T-A-AA--T-TGTA----ATGATAATAA-ACGC----AGTAC-T-----T--TATACT------T-ACTA--GCAATCTTGTTCTATTTTCACAAA-GTA-T-TTAA------TA-CA--TGTATTATT-TCTAA--TTGATT--T-GAATC-TTGAAA-AT---GTG----G-T-TAACAT-TCA-GA-CATCT--TT--AT-G-TT--CGC--GC-CG------AGT------------TCTCCAGCAGC--AA-TGT-----GGC-C-A-A-T---TA-C-GT-CAGA-----ACACAGA--TGCA---TGA-CT-G--GA-AT--ATGG-----GA--TAC----CTCCCATAAACCTTTC-TTTAGAGTGT-TTAATTTG-----ATGAAATCT-C-TA---AGTGA---ACACTACAA------------------A-----------CA--GT-------------TTAGGCCATCACT-ATTTATTTCAGAAGGCATTCTAAGTTTT-GCTGTGC-AAAA
gi|10 : gtattaagaagtgttcatgaaaatctatgacaagggtttaaaattgtcattttgaatgtaatatgattttgaaaaccatacgatgtgctttccccgtcaaggagatttttcataaagatctaactaattgtacaatccatggagctgccatattgataaattaATTACCTCCCT--GCT-AGGT----T-AT-CTCT-----AGCAT-CTACCAGAGGT-C---A-GCA-CTGTATGCTG-ACG--T-CAGTTGGGCCA--CAT-GC--ATTTTTGGCACA--------TT------------------------CT-CTTAGTA--ACAC----AATGTGAA--AATG--TCA-A--CATCAGAA-A-TGAACT--A-AATAATGAG-AC-CGAA-AC-TG----AA-GTATTT-GG-ATA---TGAATTTGAA-CCA-GAGTTT-TAC-AGAGA-AGGAA----AA-TAG-T-TTCC---AAATTA-GTGTTT-CCT-CACCA-GAAACTGgaataagttatttctatgaacacttcc
gi|11 : taaaggaagtgttctgaaaatatgaacaaaggtttttaaaattgttcatttgatgtatataatgaattttgaaaatcatacaagatgtagctttcttcagtaaggagatatttcataaagattaactaatttttacaatccatggaagctgccatatgaataaaatC-AT-CACACAAAGTGTATT-TCTCTA-CAT-CCTG--AC--T---------------------------------T-TGA-CCTTGA----CAGCTTA-----ATT-A-CTATCTCG--TACAAAAAGCTCACAGAGG-AATTC-GGAAGAGCCCCAGAGCACTTACAT--C--A-GAAGTATAAA--AAAACC--------AC-AAA-----------------T----T-ATCTGCCTTGT--A-TT-A-TCAACA-TTCT-AAA------CA-TAAGCAT-TCCATTTG-TGTTT----ACA-AACATTTTCAACA-TT-CACA-TA-G-----TAATT-G--GATACATT-------TCTGTTTGC-AAGACC---A-TCA-G-ATTTATGGCT-TACA-CA-ACAAA-TCAT
gi|12 : -ATGCTT-CCT-GACCA-GCAACTGACT-TTAA-TG--AGA-GA--GTAATT-TCTAT-GG-ATTGGTATGG-TTGT-AAATAT-TGTTCAA-T-TT-TACCTACA-TTCAAG-GAG-TG-TC-TCTGTTGT-CATGAGT--TT----------------------------ATATAAAC-ATGCACACAAAGTGTATT-TCTCTA-CAT-CCTG--AC--TGTG--ACACA----GTGTGTGT-CTAAGTCCTGT-TAT-CCTTGAAACACAGCTAGCTTACATT-ATCTATCTCAGGTACGAAA-GC-CAGAGAGG-aac
gi|14 : gT--A--A-CAAGTA-AGT--AAAAC---------AC-AAAC-A-AAAATGAAAAATAT-----------C--TGT--G-TTCA-T-----------AAA--------------AT-GCCAATTG-TGTGT----A---AACATTTCCA-CG-CA-TACC-TATG-----TGATA-G--AACACAAT-------TCTGTT-TG-A-TACA---A-TCAAG-AGTTATGGCG-T--A-CAGAT-AATTCATcagaacactt
gi|15 : ATTACCTCCCT--GCT-GGGT----T-AT-CTCC---T-AGCAT-CTAGAAGACAG-C---A-GCA-CTA-ATGTTG-ACG--T-CAGTAAG-AAA--CG-TAT--ATTTT-GGCACG--------
gi|16 : tctttcaatccttgggagctgccatattgataaattgTAAT-G-----GA--TAC----CCTCCATAAACCTTTCAATTAG--TGT-TTAA-TTG-----ATGAAATCTCT-TA---AGAGA---A----ACAT------------------AGTTTTTAGCCTCA--CTA------------TT----------T-AT---TTTCAGAAGGCATTCTAAG-TTT-GCTGTGC-AAAAATATTTgtgaacagtatcaacgcttatta
gi|18 : A--TT-------AT-C-------AGACTC-G-A-A-TAA-G---A-C-TTTCA--TT--AAAC-------------------TG-C-------A---------TCACC-ATCAAACAT-----CAGTC-TATCA--TGGTC--------C--AATTTGAACAGAAT------AT---------A-T-CA----------A-TGTA-T-A-AA--TATGT-----ATGATAATAA-A-ttttcatgaacacttc
gi|19 : AAA--TGCT---TA--TTTG--AA-AT-AAT-G-----GA--TTG----CCTCCATAAAACTTTCACTTGGAGTCT-TTGA-TTG-----ATCATATCTTG-TA---ATAGA---A----ACAA------------------G-----------CA--c
gi|2 : tTTACCTCCCT--GCCGAGGTCTTAT-ATACTCCTCGTGAATCT-CTACCAGAGGT-CGCGA-GCA------TGTTC-AGGATT-GGGTCAA-CCATTCGTTGCTTAGTTT-GGTACGCATTGTTATT-TACCACGGAGACTA-CCTTTCA-CTTCTTGCCA-CCCACTCTAG--GTGGATAAATG--TCACA--CATCACAG-ATTGAACT--A-AATAATGAA-ACGAG-A-AC-TGCAT-AG-GTATTT-GA-ATA---T-AGTTTGA--CCACGAG-TT-TAC-AGAGGCAAG-GGCAGAA-TTGATGTTCCC-AGGATTC-ATGCTT-CTTACGCAA-GAAA-TGACT-TTAAATG--AGATGA--GGATCT-TTTCT-GG-ATTGTTGTGC-TTGTTGGAAATGTTTTCAA-T-TT-TACCTA-A-TTCAAG-GAT-TA-TT-TCTGTTGT-CATGAGTCCTTGGACCA-T-ATGGTTTTTTGG-ATT---ATATAAAC-ATG-ACACAAAGTGCATTATCCCTA-CATCCCTGTTAC--TTG---ACACA----GTGTGTGTACTAAGTCCT-T-TATCCCTTGG---ACTAC--G--TACATT-ATCTATCTCGAA-ACAAAA-GC-CAC-GAGG-A-----AGGGGAGTCCCAGA-CACTTACAT--A--AGCAAGTA-AGA--AACAC---------AC-AACCAA-AAAGTGGAAAA-AA----T-ATCTGC--TGT--A-TT---TCAAAT-T-CT-AAAACTTAGCAGTG-GCAT-GCTATTT--TGTGT----ACGTAACATTTCCA-CA-TT-CACCGCATT-----CAATG-GGAGACACATT-------TCTGTT-GCAA-GACA---G-TCAAACGTTTATGGCCGCACATCAGACAAATTC--------------TAGATGTGGTCAGCCTCTG-G-----------GG----------GAAT-------AATTCAGAT--TACCCTCAATTGTGTTGTG-ACTGAAATAAGGAAAA--ATTTTGGAT-AATGAA-GATG-ACAAA--TT-------AC-C-------CAACTCTGGACA-TAA-GTA-ATC-TTTCA--AT--AGACA-AA-TGTTAATGAAT-ATTG-T-------AG--------TCACT-C---AACATTATTCCAGTC-TAT-A--TGGTC--------C--A-------------------AT-------TGGTT-CACTGCAACAACA-TGTA-T-ATAG--T-TTTACATAATGATAATAAGA-GC----AGTAC-T-TTAAT--TAT-AT------TGAC-A--GCAATCTTGAT-TTTCTCC---AAGATA-A-TTAA------TA-CAATTGTA-TATT-TCTAA--TGCA-T--TGGAACCTTTGAAATAT---A-G-CT-GCT-T-AAATCTCAGGA-CATC---TT--A-CGTTG--CCGTAACGCGTGTAACAG-GACCC-TGAAACTCTCCAGCAGCTAAA-T-T-----GAC-C-A-TCT---TA-CTGT-CAGA-----A-ACAAG--TGaattggctttag
gi|20 : acaatccatgggagtgaggctcgcatcatctttagataacaattaatGA---A----ACAAGTGCA-------------A-----------CA--CA-------------TT----------T-AT---TTTCATCAGCC-TTCTAAG-TTTTGCTGTGCAAAAAATAGT
gi|21 : -GG-ATA---TCAGTTCAAA-TCT-GAGCTT-TAC-AGAGA-AAA-A----AA-TCG---TTCTC-AT-ACTG-ATGCTT-CTT-CACCA-ACAATTGA-T-TTAA-CG--AAA-GG--GGGATT-Tctttttcatgacacttcctttaacgaaattgtct
gi|22 : -ATGCTC-TCC-CACCA-GCGACTGACT-TTAA-TG--AGA-GA--GGACTT-TCTCG-GG-ATTCGTGTGC-TTGTG-AAAAT-TGTTCAA-TGTC-TACt
gi|23 : -ATGCTT-TCC-CACCA-GCGACTGACT-TTAA-TG---GA-GA--GGACTT-TCTCG-GG-ATTCGTGTGC-TTGTG-AAAAT-TGTTCAA-TGTC-TACtc
gi|24 : A--CT-------------AT----------T-AT---TTTCAGAAGGCATTCTAAG--TT-G-TGTGC-AAAAATATTTtc
gi|25 : cataaacagtttttcaagcctca-TT-AACCTACA-TTCAAG-GAG-TG-TT-TTTGTTGT-TATGAGT--TT-GAATATT-ATtttttcatgaacact
gi|26 : ACT--A-AATAGTGAG-AC-AG-A-AG-TA----CATGTATTT-GG-ATA---CCAG
gi|27 : ATT-------TCTGTT-GC-A-GACA---A-TCAAG-ATTTATGGCC-CACA-CAGACaa
gi|3 : CATTACCTCCCT--GCT-AGGC----T-AT-CTCTTAATTAACAT-CTACCAGAGGT-C---A-GCA-CTG-ATGCTG-ACG--T-CAGTTGG-TCA--CATTGC--ATTTT-GGCACA--------TTATAC----------AGCA--TCAACT-CTTATTA--ACAC----A--GTGAC--AATG--TCA-A--CATCAGAA-AGTGGACT--A-AATAATGAG-AC-AG-A-AC-TG----AA-GTATTT-GG-ATA---TCAGTATGAA-CCA-GAG-TT-TAC-AGAGG-AAG-A----AA-TTG-T-TTCCC-AGAATTATATGCTT-CCT-CATCA-GAAACTGACT-TTAA-TG--AGA-GA--GGACTT-TCTCT-GG-ATTGTTGTGC-TTGTGAAAAAT-TGTTCAA-T-TT-TACCTATA-TTCAAG-GAG-TG-GC-TCTGTTGT-CATGAGT--TT-GACCATT-ATG---TTTTGG-ATT---ATATAAAC-ATGCACACAAAGTGCATT-TCTCTA-----------------------ACA----GCGTGTGT-TTAAGTCCTGT-TAT-ACTTGAT--ACAGCTTA--TACATT-ATCTATCTTGGGTACAAAA-CC-CAGAAAGGAA-TT----AAGAGCTCCATAGCACTTACAT--A--A-CAAGTA-AGA--AAAAC---------AC-AAAC-A-AAAGTGGAAAACATACAGT-ATCTGC--TGT--A-TTTA-TCAAAA-T-CA-AAA------CA-TA-GCAA-GCCATTTG-TGTGT----A---AACATTTCCA-CA-TT-CACCTTATG-----TAATA-G------CATT-------TCTGCT-GC-G-GACA---T-TCAAG-ATTTATGGCT-TACA-CAGACAAATTCATTAATAT-TGGGTCAGATGTGGTCAG------------------------------------------AGT--AG-TTATACCCTCA--TGTGTTGTG-ATGGAAATAAAGAAAA-CATTTT--AT-GATGAA-GATG-ACAAA--TT-------AT-C-------AGACTC-CGA-A-TAA-GTT-ATC-TTTCA--AT--AGACA-AA-CGT-------T-ATTG-T-------A---------TCACC-A---AACATTAT--CAGTC-TAT-A--TGGTC--------C--A-------------------A--------TAA-T-CA----------G-TGTA-T-A-AA--T-TGT-----ATGATAATAA-A-GA----AGTAC-T-T--AT--TAT-CT------T-AC-A--GCAATCTTGTT-TATTTCC---AA-ATA-T-TTAA------TA-CA--TGTA-TA-T-TCTAA--TTGA-T--T-GAATC-TTGAAATAT---GTG-TTAA-T-TAACAT-TCA-GA-CATCT--TT--ATCG-TG--CACTAAC-TGTGTAACAGTGACCC-TG--AGTCTCTAGCAGC--AA-TGT-----GAC-C-ATT-T---TA-C-GT-CAGA-----ACACATA--TGTA---TG--CTGG--GA-ATTAAT-G-----GA--TAC----CCTCCATAAACCTTTCATTTAGAGTGT-TTAA-TTG-----ATGAAATCTCC-TA---TGAGA---A----ACAA------------------A------------------------------------------T-AT---TTTCAGAAGTCCTTCTAAG-TTT-GCTGTGC--AAGATAGTT
gi|4 : atTGA-ATT---TTATAAAC-ATGCACACAAAGTACGTT-TCTC---CAT-CCTG--AT--TTTG--ACACA----GTATGTGT-CTAAGTCCTGT-TAT-CATAGAG--ACAGCTTG----CATT-ATCTATATCGGGTATAAAA-GC-CACAGAG-----------------------CACTTACGT--A--T-CAAGTA-AGA--AAAAC---------AC-AAAC-A-AAAGGTGAAAATAT------ATCTGC--TGT--A-TTTA-TCAAAT-T-CT-AAA------CA-TA-GCAT-GTCATTTG-TGTGT----A---AACATTTTCA-CA-TT-CACC-TATG-----TAATA-G--GACACATT-------TCTGTT-GC-A-GACA---A-TCAAG-ATTTATGGAT-TACA-CAGAAAGAATCATTA--AT-TGGGTCAGATGCGGTCAGCCTCTG-G-----------GG----------G---------------AA-A--TACCCTCA--TGTGTTGTG-ATGCAAATAAGGAACA-CCTTTT--AT-GATGAA-GATG-AACAA--TT-------AT-C-------AGATTC-GAA-A-TAA-GTA-ATC-TTTCA--AT--AGACA-AA-TGT-------T-ATTG-TATATTGCA---------TCACC-A---AATATTAT--CAGTC-TAT-A--TGGTC--------C--AAT----------T------GTTCATCAATAA-T-CA----------A-TGTA-T-A-AA--T-TGT-----ATGATAATAA-A-GC----AGTAC-T-T--TA--TAT-CTATATGAT-AC-A--GTAATCTTGTT-CATTTCC---AA-ATA-T-TTAATATATGTA-CG--TGTA-TA-T-TCTAA--TTGA-T--T-GAATC-TTGAAATAT---GTG-TT-A-----ACAT-TCA-GA-CATCT--TT--ATCG-TG--CACTAGC-TGTGTAACAGTGACCCTT---AGTCTCCAGCAGC--AA-TGT-----GGC-CAA-T-T---TA-C-GT-CTGA-----ACACAGA--TGCA---TG--CTGG--GA-ATTAAT-G-----GA--TAC----CCTCCATAAACCTTTCATTCAGAGTGT-TTAA-TTG-----ATGAAATCTCC-TC---AGAGA---A----ACAA------------------A-----------CAAGCTTTTAGCCTCACTATT----------T-AT---TTTCAGAAGGCCTTCGAAG-TTT-GCTGTGC-AAAAATAGTT
gi|5 : CATTACCTTCCTTTGCT-AGGT----A-TT-TTCTTAG---GCATTCTACACGAGGTGC---AAGCAACTG-ATGCTG-ACG--TATGGTTTG-CCA--TAT--C--ATTT--GGCACA--------TTCTAC-------------------------TAGTA-CACAC----A--GTGAA--AATAGCTCA-ATGCATCAGAACAGTGAACT--AGAATAACGAG-AC-AG-ATACGTGTAGTGA-GTATTTTGGCATA---TGAATTTGAA-CCA-GAGCTT-TACCAGAG--AAG-A----AACTTG-T-TCCCCGAGAATTA-GTG--T-CCT-TACCATGAAACTGACTGTTAA-TGTCAGA-GA--GAATTTGTCTCTTGG-ATTGTTGAGC-TTGTAAAAAAT-TGTTCAAAT-TT-TACCTACA-TTCAAG-AAGGTGCTC-TCTGTTGT-CATGATA--GT-GACCCAT-AAG---TTTTGGCATTCAGA-ATAAGCCATGCACACAAAGTGTATT-TCTCTA-CAT-CCTG--AC--TTTTGAACTCA----GTGCGAGT-ttttcatgaacactaccttta
gi|6 : attaaaggaagtgttcatgaaaatatgttatacaacttagggcctttaaatatgtcgtcatttttgcatttgtatattaatgaatttttgataatcattacaagtagctttcctccagtaataatatctatgaaagattagtagctaattttacaattccatggaaagctccatattgataataagAT-GCCATTTG-TGTGT----A---AACATTTCAA--A-TAACACA-AACA-----TGATA-G--GGTATAGTAACAA--T-TAAT-GC-A-GACATGCACTCAAC-ATTTATGGC---ATA-AAGACAG-TTTATCA--AC-TGGGTCAGACGAGGTCAGCATCTT-A-----------GA----------G--TGAGCTAGAGT--AG-TTCTACTCTCA------TTGTG-ACAAAAGTTAGAGAGG-CATTTC--CT-GATGAATGCTG--C-AA--TT--------T-C-------TGAAT------A-TAATGTATTTT-TTTCAGTAT--AAATA-AACTGTA------A-ATTG-C-------A---------TCACC-A---AA-ATT-C--CTGT--TAA-A-----TC--------C--A------------T------GT--------------A----------C-TGTACT-A-CA--T-CA------ATCATAATCA-A-AC------------T--GT--TAT-AT------G-AC-ACGGTGACC-----------CC---AA-TTA-TATTCA------CACCA--TATA-AA-A-TC-AG--TTGA-TTAT-GAATC-CTGAAATATACAGTGCTT-G-TGT-ACAT-TGA-GA-gt
gi|6 : TGCAA-AGTAACCC-----AGTTACCAACAGC--AA-TGT-----GTCTC-A-T-C---TA-C-AT-CAAA-----GCACAGT--TGCA---TG--CTGG--GA-AATAAT-G-----GA--TGCATGACCTTCATAAACCTTTCATTTAGAagttggaggagctcatgcaagagatttttttcttccttgatggtgcattgtttcaattctttcaatttgcacaaaaaccttatccatgaattctaatataaatccattatcttctgctgcaaagtaacccagttaccaacagcaatgtgtctcatctacatcaaagcacagttgcatgctgggaaataatggatgcatgaccttcataaacctttcatttaga
gi|7 : atgccatttgtgtgtaaacatttcaaataacacaaacatgatagggtatagtaacaattaatgcagacatgcactcaacatttatggcataaagacagtttatcaactgggtcagacgaggtcagcatcttagagtgagctagagtagttctactctcattgtgacaaaagttagagaggcatttcctgatgaatgctgcaatttctgaatataatgtatttttttcagtataaataaactgtaaattgcatcaccaaaattcctgttaaatccatgtactgtactacatcaatcataatcaaactgttatatgacacggtgaccccaattatattcacaccatataaaatcagttgattatgaatcctgaaatatacagtgcttgtgtacattgagaagttggaggagctcatgcaagagatttttttcttccttgatggtgcattgtttcaattctttcaatttgcacaaaaaccttatccatgaattctaatataaatccattatcttctgcC-AAAC-A-AAA-TGGAAAAT------T-AT-TGC--TGT--AATTTAATCAAAA-T-TT-AAA------CA--A-TCATTGCAATTTG-TGTGTTTACA---AACATT--CA-C--TT-CAC--TATG-----TACTACG--GACACATTGTACATTTCTGTT-GC-A-GACA-----TCAAG-ATGTATGGCT-TACA--AGACAATTTCATTA--AT-TGGGTCAGATGTGGTCAGCCTCTG-G-----------GAAAATTCAGATG--T-------AGTC-AG-T--TACTC-----TGTGTTGTGCATGG-ATTAAGGAAAA-CATTTT--AT-GATGAA-GATGAACAAAATTT-------AT-C-------AGACTC-AGA-ATTAA-GTA-ATC-TTTC---AT--AGACA-AA-TGT-------T-ATTG-T-------ATAATTGCAGTCACCTC---AAC---AT--CAGTC-TAT-A--TGGT---------C--A------------TTGAAAAATTA-----TAA-TACC----------A-TG-A-TAA-AA--T-TGTTA---ATGATAATAA------------GC-T-T--A-----------------AC-A--GCAAT-TTGTT-TATTTCC----A-ATATT-TTAA------TA-CA--T-TA-TA-TATTTAATTTTAA-T--T-GAATCTTTGAAA-------------------------CA-GACCATCT--TTAAATCG-TGGCCACTAGCTTGCGTAAC-------------AGTCTCCAGCAGC--AATTGT-----GGC-C-A-T-T---TA---GT-CAGA-----ACACAAA--TGCA---TG--CT-G--GA-ATTAAT-G-----GA--TA-----GCTCCAT-ACCCTTTCATTTAGAGTGC-TTAA-TTG------TGAAATCT
gi|8 : GGGTCAGACCTAGTCGGCCTCTGCG-----------GA----------A--A-------A-----------AACCTCA--TGTGTTGTG-ATGAAAATAAGGGAAATCATTTC--CC-GATGAA-GATG-GCAAA--TTCGGAGGAAT-TTTCTAATAGAATC-GGA-A-TAA-GTA-ATC-TTTCA--GTGCAAACA-AT-TGT-------T-ATCG-T-------AAATTGAT--TTACC-A---AAATTTAT--CAGTC-TAC-A--TGCTC--------C--A------------T------GTATATCTATAA-T-CA----------A-TGTA-T-A-AA--T-TGT-----ATGACAATAC-A-GC----AGTATGT-T--ATAATAT-CT------T-TT-A--GCAATCTTGTT-TATTTCG---AG-ACA-T-CTAA------TA-CA--T-----A-T-TCTAA--CTGA-T--T-------TTG-----T---GTT-TT-G-----GCAT-TCA-GG-CATCTCTTT--ATCA-TG--CACTAAT-TATGTAACAGTGACCC-A---AA-CTACAGCAGC--AA-TGA-----GTC-T-AAT-T---TA-C-GT-CAGA-----ACACAGA--TGCA---TG--CTGG--GA-ATTCAT-G-----GA---AC----CTTCCATAAACC-------------GT-TTAA-TTG-----ATGACATTTCC-TA---GGAGA---A----ACGAACAAACAAGTTCTTAGCCA-----------CA--CT-------------TT----------TAAT---TTTTAGAAGAC---CT-AG-TTT-
gi|9 : AAA--TTT------ATAC-------AGGACC-GGAGA-TAA-GTA-ATC-TTTCA--ATA-AGACATAA-TGT-------TAATTGATACATGCGA---------TCACC-A---AAC---AT--CAGT--TATAA--TGGTCAATTTTGACGAA------------T------ATAA-----TAA-T-CA----------A-TGTA-T-G-AAGGT-TGT-----AT-ATAATCA-A-CCTTAGAGTCC-TCT--AT--T--------------C-A--G-----TTCTT-TATTTCttcatcctaaagtgtttttttttcatgaacacttaatttagtttttgt
gi|9 : aaCC-C---AGTGCTCATTGGC--AA-TGTTTTGAGGC-C-A-T-TATTTAAC-GTACAGACTTTGACACAGAATTACAGATTGACTTGGTAGACATTAAT-GTTAACGAGCTAC----CT--CATAATCTTCTAATTTAGAGTGTATTAA-TTGAATGCATAAAATCTCTGTAATCAGAGACTTA----ACAA------------------A-----------tgattagggcagccctatcttgtgttatccattaatccaaatagttctttccccaagataattttatacattggggcatgagtagtattcttgaaatatgtcatcatggtgtgaacaaatttcaagaggcggattctcttttcgtgtcatctaggactttcgattgtatgttcacatgttttttagcggccttcgataatcattcccagtgctcattggcaatgttttgaggccattatttaacgtacagactttgacacagaattacagattgacttggtagacattaatgttaacgagctacctcataatcttctaatttagagtgtattaattgaatgcataaaatctctgtaatcagagacttaacaaa
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|13 ): TTTAAAGTAGGTGTTCATGAAAATATGACAAAGGGTTTAAAATTGTCATTTTGATGTATATAATGAATTCTGAAAATAATAAAGATGTAGCTTTCTTCAGTAAGGAGATATCTTATAAAGATTAACAAATCTTTACAATCCATCGAACT
Unaligned ( gi|17 ): AGGAAGTGTTCATGAAAATATGACAAATGGTTTAAAGTATATAATGCTCTTTGAATATCATAGAGATATAGCTTCCTTCGGTAAGGACATATTTCATACGACAAACAAATCTTTACAATCC
Alignments
lowQualScore : 11111111111111111111111111111111111 1111111111111111111111111111111111111111111111111111111111 1111111111111111111111111111111111111111111111111111111111111
lowQualScore : 111111 1 33333 111 33333333333333333333333333333333333 11 3333333 11 11 11 2222 111 1 11 111111 1 111 22 1 111 111 22222222 1111 2222 333333 444444 1111111 333333333 222222222 2222222222222 22222222 1111111 2222222 11111 11 99999999999999999999999999999999999999999999999 1111111 1111111 11 55555555555555555555555555555555 11111111 0000000000000000000000000000000000000000000000000000000000 22222 11111 3333333333333333333333 111 111111 111 1 4444444444444444444 11 22222 11111 1111111 11111 11 11111 11111 111 1111 1111111111111111111111111111111111111111111111111111111111111 111 1
lowQualScore : 99 6 666666 3 88888 6 99 111 6 6 6 6 99 6 0 4 6 99 0 7 99 6 88888888888888888888888888888888888 8 88 1111111 11 11 8 11 8 5 99 6 6 99 6 6 6 5555 6 5 5 000 6 6 6 2 6 6 00 444444 3 222 6 1 8 4 4 4 1 5 5 66 5 66 1 5 5 5 1 5 00 5 5 0 5 1 6 6 6 6 6 6 99 77 999 444 6 3 111 3 5 5 5 5 77 99999999 2222 5 3 2 6 6 2 6666 000000 6 1 7 6 6 333333 5 5555555 6 99 333333333 5 555 44 1 999999999 0 77 77 5 777 7777 5 5555555555555 5 5 77777777 5555 5 8888 2222222 5 777 5555555 4 4 4 33333 4 66 4 0 00 0 55 1 22222222222222222222222222222222222222222222222 77 5 999 5 1 66 5 999 5 5 6666 66 8888888 4 4444444 0 4 0 8 4 4 4 4 66 00 4 4 99999999999999999999999999999999 88888 00000000 55 8 66 1111111111111111111111111111111111111111111111111111111111 4 4 4 4 66 4 11111 555 00000 5 0000000000000000000000 5 66 0 5 000 5 666 666666 5 77 6 5 111 77 5 77 5 1 8888888888888888888 5 5 5 99 99 6 99 44 0 0 44 77777 66 5 22222 0 5 5 0000000 666 5 22222 66 888 11 5 66 5 1 4 11111 66 9999 5 5 22222 5 000 888 0000 4444444444444444444444444444444444444444444444444444444444444 5 000 1 5 5 6
lowQualScore : .. . ...... . ..... . .. ... . . . . .. . . . . .. . . .. . ................................... . .. ....... .. .. . .. . . .. . . .. . . . .... . . . ... . . . . . . .. ...... . ... . . . . . . . . . .. . .. . . . . . . .. . . . . . . . . . . . .. .. ... ... . . ... . . . . . .. ........ .... . . . . . . .... ...... . . . . . ...... . ....... . .. ......... . ... .. . ......... . .. .. . ... .... . ............. . . ........ .... . .... ....... . ... ....... . . . ..... . .. . . .. . .. . ............................................... .. . ... . . .. . ... . . .... .. ....... . ....... . . . . . . . . .. .. . . ................................ ..... ........ .. . .. .......................................................... . . . . .. . ..... ... ..... . ...................... . .. . . ... . ... ...... . .. . . ... .. . .. . . ................... . . . .. .. . .. .. . . .. ..... .. . ..... . . . ....... ... . ..... .. ... .. . .. . . . ..... .. .... . . ..... . ... ... .... ............................................................. . ... . . . .
lowQualScore : 22 7 222222 3 55555 7 88 777 7 7 7 7 22 7 7 8 7 22 7 3 22 7 22222222222222222222222222222222222 0 00 8888888 00 00 0 00 0 0 22 7 7 88 7 7 7 8888 7 7 7 000 6 7 7 0 7 7 33 333333 3 555 7 7 9 4 4 4 7 0 0 99 0 99 0 0 7 7 3 7 77 7 7 0 0 0 7 7 7 7 7 7 22 77 222 000 7 2 777 2 7 7 7 7 99 99999999 1111 7 2 5 7 7 5 7777 777777 7 0 3 7 7 444444 0 3333333 7 22 333333333 7 999 66 4 444444444 7 99 99 7 333 7777 7 1111111111111 0 0 99999999 2222 0 6666 8888888 0 111 6666666 4 4 4 22222 4 99 4 1 88 1 88 4 33333333333333333333333333333333333333333333333 99 0 333 7 4 77 7 444 7 7 7777 11 9999999 4 4444444 1 4 1 9 4 4 4 4 11 66 4 4 77777777777777777777777777777777 66666 77777777 66 9 11 2222222222222222222222222222222222222222222222222222222222 4 4 4 4 11 4 77777 333 88888 0 4444444444444444444444 0 99 2 0 000 7 111 444444 7 99 6 7 999 99 7 99 7 4 7777777777777777777 7 7 7 22 22 7 22 00 1 7 44 00000 99 0 55555 2 0 0 9999999 222 0 55555 11 888 99 6 99 0 9 4 11111 11 4444 0 0 55555 7 000 888 6666 0000000000000000000000000000000000000000000000000000000000000 7 000 9 7 7 7
consensus : NNCATTACCTCCCT--GCT-AGGT----T-AT-CTCTTAGT-AGCAT-CTACCAGAGGT-C---A-GCA-CTG-ATGCTG-ACG--T-CGGTCGG-CCA--CGTTGC--ATTTT-GGCACG--------TT-TAC----------A-C---TCA-CT-CTTAGTA-CACAC----A--GTGAA--AATG--TCA-A--CATCAGAA-AGTGAACT--A-AATAATGAG-AC-AG-A-AC-TG----AA-GTATTT-GG-ATA---TNAGTTTGAA-CCA-GAGCTT-TAC-AGAGG-AAG-A----AA-TTG-T-TTCCC-AGAATTA-ATGCTT-CCT-CACCA-GAAACTGACT-TTAA-TG--AGA-GA--GGANTT-TCTCT-GG-ATTGTTGTGC-TTGTGAAAAAT-TGTTCAA-T-TT-TACCTACA-TTCAAG-GAG-TG-TC-TCTGTTGT-CATGAGT--TT-GACCATT-ATG---TTTTGG-ATT---ATATAAAC-ATGCACACAAAGTGCATT-TCTCTA-CAT-CCTG--ACT-TT---ACACA----GTGTGTGT-CTAAGTCCTGT-TAT-CCTTGA---ACAGCTTG--TACATT-ATCTATCTCGGGTACAAAA-GC-CACAGAGGAATTC-GGAAGAGCCCCAGAGCACTTACAT--A--A-CAAGTA-AGA--AAAAC---------AC-AAAC-A-AAAGTGGAAAATAT----T-ATCTGC--TGT--A-TTTA-TCAAAA-T-CT-AAA------CA-TA-GCAT-GCCATTTG-TGTGT----A---AACATTTCCA-CA-TT-CACC-T-ATG-----TAATA-G--GACACATT-------TCTGTT-GC-A-GACA---A-TCAAG-ATTTATGGCT-TACA-CAGACAAATTCATTAAT--TGGGTCAGACGTGGTCAGCCTCTG-G-----------GA----------G--T-------AGT--AG-T--TA--CCCTCA--TGTGTTGTG-ACGGAAATAAGGAAAA-CATTTT--AT-GATGAA-GATG-ACAAA--TT-------AT-C-------AGACTC-GGA-A-TAA-GTA-ATC-TTTCA--AT--AGACA-AA-TGT-------T-ATTG-T-------A---------TCACC-A---AACATTAT--CAGTC-TAT-A--TGGTC--------C--A------------T------AT-------TAA-T-CA----------A-TGTA-T-A-AA--T-TGT-----ATGATAATAA-A-GC----AGTAC-T-T--AT--TAT-CT------T-AC-A--GCAATCTTGTT-TATTTCC---AA-ATA-T-TTAA------TA-CA--TGTA-TA-T-TCTAA--TTGA-T--T-GAATC-TTGAAATAT---GTG-TT-G-T-T-ACAT-TCA-GA-CATCT--TT--ATCG-TG--CACTAGC-CGTGTAACAGTGACCC-T---AGTCTCCAGCAGC--AA-TGT-----GGC-C-A-T-T---TA-C-GT-CAGA-----ACACAGA--TGCA---TG--CTGG--GA-ATTAAT-G-----GA--TAC----CCTCCATAAACCTTTCATTTAGAGTGT-TTAA-TTG-----ATGAAATCTCC-TA---AGAGA---A----ACAA------------------A-----------CA--CT-------------TT----------T-AT---TTTCAGAAGGCATTCTAAG-TTT-GCTGTGC-AAAAATAGTT
Reference ( family-366 ) : NNCATTACCTCCCT--GCT-AGGT----T-AT-CTCTTAGT-AGCAT-CTACCAGAGGT-C---A-GCA-CTG-ATGCTG-ACG--T-CGGTCGG-CCA--CGTTGC--ATTTT-GGCACG--------TT-TAC----------A-C---TCA-CT-CTTAGTA-CACAC----A--GTGAA--AATG--TCA-A--CATCAGAA-AGTGAACT--A-AATAATGAG-AC-AG-A-AC-TG----AA-GTATTT-GG-ATA---TNAGTTTGAA-CCA-GAGCTT-TAC-AGAGG-AAG-A----AA-TTG-T-TTCCC-AGAATTA-ATGCTT-CCT-CACCA-GAAACTGACT-TTAA-TG--AGA-GA--GGANTT-TCTCT-GG-ATTGTTGTGC-TTGTGAAAAAT-TGTTCAA-T-TT-TACCTACA-TTCAAG-GAG-TG-TC-TCTGTTGT-CATGAGT--TT-GACCATT-ATG---TTTTGG-ATT---ATATAAAC-ATGCACACAAAGTGCATT-TCTCTA-CAT-CCTG--ACT-TT---ACACA----GTGTGTGT-CTAAGTCCTGT-TAT-CCTTGA---ACAGCTTG--TACATT-ATCTATCTCGGGTACAAAA-GC-CACAGAGGA-TTC-GGAAGAGCCCCAGAGCACTTACAT--A--A-CAAGTA-AGA--AAAAC---------AC-AAAC-A-AAAGTGGAAAATAT----T-ATCTGC--TGT--A-TTTA-TCAAAA-T-CT-AAA------CA-TA-GCAT-GCCATTTG-TGTGT----A---AACATTTCCA-CA-TT-CACC-T-ATG-----TAATA-G--GACACATT-------TCTGTT-GC-A-GACA---A-TCAAG-ATTTATGGCT-TACA-CAGACAAATTCATTAAT--TGGGTCAGACGTGGTCAGCCTCTG-G-----------GA----------G--T-------AGT--AG-T--TA--CCCTCA--TGTGTTGTG-ACGGAAATAAGGAAAA-CATTTT--AT-GATGAA-GATG-ACAAA--TT-------AT-C-------AGACTC-GGA-A-TAA-GTA-ATC-TTTCA--AT--AGACA-AA-TGT-------T-ATTG-T-------A---------TCACC-A---AACATTAT--CAGTC-TAT-A--TGGTC--------C--A------------T------AT-------TAA-T-CA----------A-TGTA-T-A-AA--T-TGT-----ATGATAATAA-A-GC----AGTAC-T-T--AT--TAT-CT------T-AC-A--GCAATCTTGTT-TATTTCC---AA-ATA-T-TTAA------TA-CA--TGTA-TA-T-TCTAA--TTGA-T--T-GAATC-TTGAAATAT---GTG-TT-G-T-T-ACAT-TCA-GA-CATCT--TT--ATCG-TG--CACTAGC-CGTGTAACAGTGACCC-T---AGTCTCCAGCAGC--AA-TGT-----GGC-C-A-T-T---TA-C-GT-CAGA-----ACACAGA--TGCA---TG--CTGG--GA-ATTAAT-G-----GA--TAC----CCTCCATAAACCTTTCATTTAGAGTGT-TTAA-TTG-----ATGAAATCTCC-TA---AGAGA---A----ACAA------------------A-----------CA--CT-------------TT----------T-AT---TTTCAGAAGGCATTCTAAG-TTT-GCTGTGC-AAAAATAGTT
gi|1 : ATTACC--CCT--TCT-AGGT----TTATTCTCTTGG-----AT-CTCCCAGAGG--C---A-GCA-CTG-ATGCTGGACG--T-CA-TTGG-CCA--CATTGC---TTTT-G-CACA--------TT------------------------CT-CTTAGTAACACAC-------GTGAA--AACG--TCA-A--CATCAGAA-AGTGAACCTAA-AATACTGAGGAC--G-A-AC-TG----AA-GTATTT-GG-ATACTATAAATTTGAATCCA-GAGTTTATAC--GAGG-AAG-A----AAATTG-T-TTTCC-AGAATTATATATTTTCCT-CACCA-GAAACTGACT-TTAA-TG--AGA--ATTGAAATT-TCTAT-GGAATTATTGAGCTTTGTT-AAAAT-TGTTCAA-T-TTATACC-ACATTTCAAGAAAG-TG-TTATCTGTTGTCCATGAGT--TT-AACCATTGATG---TTTTGG-A-T---AGATAGAC-ATACACACAAAG-GTATT-TCTGTAGCAT-CCTG--ACG-TT---TGACAACGTGTGTGTGT-CT-AGTCCTGTGCAG-C--TG----ACAGC------ACATTAATCTATCTCCGG-ACAAAA-GC-CACAGAGGA-TTCGGGAAGAGCCCCAGAGCACTCACATTCAGTA-GAGGCA-TGACGAAAACGAAATGAGAACTAGAC-ATAAAGAAGAA---AT----TGATCTGC--TGCTGA-TTTA-TCAAAATT-CTAAAA------CA-T---TAT-G-CACTTGTTGTGTTTCAA---AACATGTCCA-CAGTT-CACC-T-A-GTCAATTAATG-G--AACACATT-------TCTGTT-GC-A-GACA---A-TCAAG-AATTATGGCT-TACA-CAGACCAATTCA-TAATG-TGCGT-AGATGTGGTCA-CCTCTG-GGGAAAATTCAAGA----------G--T-------AGTG-AA-T--TA--CTC-------TGTTGTG-ATG--AATAATGAAAA-CATTTT--TTAGATGAA-GATG-A-AAA--TT-------AT-C-------AGACTC-GGA-A-TAA--TA-ATCTTTTCA--AT--AGACA-AA-TGTTATGTA-T-ATTG-C-------A---------TCACC-A---AACATCA----GGTCTTAT-GATTGGTT--------C--A------------TGAAA--ATTAA----TAA-T-CA----------ATTGTA-T-A-AA--T-TGTA----ATGATAATAA-ACGC----AGTAC-T-----T--TATACT------T-ACTA--GCAATCTTGTTCTATTTTCACAAA-GTA-T-TTAA------TA-CA--TGTATTATT-TCTAA--TTGATT--T-GAATC-TTGAAA-AT---GTG----G-T-TAACAT-TCA-GA-CATCT--TT--AT-G-TT--CGC--GC-CG------AGT------------TCTCCAGCAGC--AA-TGT-----GGC-C-A-A-T---TA-C-GT-CAGA-----ACACAGA--TGCA---TGA-CT-G--GA-AT--ATGG-----GA--TAC----CTCCCATAAACCTTTC-TTTAGAGTGT-TTAATTTG-----ATGAAATCT-C-TA---AGTGA---ACACTACAA------------------A-----------CA--GT-------------TTAGGCCATCACT-ATTTATTTCAGAAGGCATTCTAAGTTTT-GCTGTGC-AAAA
gi|10 : gtattaagaagtgttcatgaaaatctatgacaagggtttaaaattgtcattttgaatgtaatatgattttgaaaaccatacgatgtgctttccccgtcaaggagatttttcataaagatctaactaattgtacaatccatggagctgccatattgataaattaATTACCTCCCT--GCT-AGGT----T-AT-CTCT-----AGCAT-CTACCAGAGGT-C---A-GCA-CTGTATGCTG-ACG--T-CAGTTGGGCCA--CAT-GC--ATTTTTGGCACA--------TT------------------------CT-CTTAGTA--ACAC----AATGTGAA--AATG--TCA-A--CATCAGAA-A-TGAACT--A-AATAATGAG-AC-CGAA-AC-TG----AA-GTATTT-GG-ATA---TGAATTTGAA-CCA-GAGTTT-TAC-AGAGA-AGGAA----AA-TAG-T-TTCC---AAATTA-GTGTTT-CCT-CACCA-GAAACTGgaataagttatttctatgaacacttcc
gi|11 : taaaggaagtgttctgaaaatatgaacaaaggtttttaaaattgttcatttgatgtatataatgaattttgaaaatcatacaagatgtagctttcttcagtaaggagatatttcataaagattaactaatttttacaatccatggaagctgccatatgaataaaatC-AT-CACACAAAGTGTATT-TCTCTA-CAT-CCTG--ACT----------------------------------T-TGA-CCTTGA----CAGCTTA-----ATT-A-CTATCTCG--TACAAAAAGCTCACAGAGGAATTC-GGAAGAGCCCCAGAGCACTTACAT--C--A-GAAGTATAAA--AAAACC--------AC-AAA-----------------T----T-ATCTGCCTTGT--A-TT-A-TCAACA-TTCT-AAA------CA-TAAGCAT-TCCATTTG-TGTTT----ACA-AACATTTTCAACA-TT-CACA-T-A-G-----TAATT-G--GATACATT-------TCTGTTTGC-AAGACC---A-TCA-G-ATTTATGGCT-TACA-CA-ACAAA-TCAT
gi|12 : -ATGCTT-CCT-GACCA-GCAACTGACT-TTAA-TG--AGA-GA--GTAATT-TCTAT-GG-ATTGGTATGG-TTGT-AAATAT-TGTTCAA-T-TT-TACCTACA-TTCAAG-GAG-TG-TC-TCTGTTGT-CATGAGT--TT----------------------------ATATAAAC-ATGCACACAAAGTGTATT-TCTCTA-CAT-CCTG--ACTGTG---ACACA----GTGTGTGT-CTAAGTCCTGT-TAT-CCTTGAAACACAGCTAGCTTACATT-ATCTATCTCAGGTACGAAA-GC-CAGAGAGGaac
gi|14 : gT--A--A-CAAGTA-AGT--AAAAC---------AC-AAAC-A-AAAATGAAAAATAT-----------C--TGT--G-TTCA-T-----------AAA--------------AT-GCCAATTG-TGTGT----A---AACATTTCCA-CG-CA-TACC-T-ATG-----TGATA-G--AACACAAT-------TCTGTT-TG-A-TACA---A-TCAAG-AGTTATGGCG-T--A-CAGAT-AATTCATcagaacactt
gi|15 : ATTACCTCCCT--GCT-GGGT----T-AT-CTCC---T-AGCAT-CTAGAAGACAG-C---A-GCA-CTA-ATGTTG-ACG--T-CAGTAAG-AAA--CG-TAT--ATTTT-GGCACG--------
gi|16 : tctttcaatccttgggagctgccatattgataaattgTAAT-G-----GA--TAC----CCTCCATAAACCTTTCAATTAG--TGT-TTAA-TTG-----ATGAAATCTCT-TA---AGAGA---A----ACAT------------------AGTTTTTAGCCTCA--CTA------------TT----------T-AT---TTTCAGAAGGCATTCTAAG-TTT-GCTGTGC-AAAAATATTTgtgaacagtatcaacgcttatta
gi|18 : A--TT-------AT-C-------AGACTC-G-A-A-TAA-G---A-C-TTTCA--TT--AAAC-------------------TG-C-------A---------TCACC-ATCAAACAT-----CAGTC-TATCA--TGGTC--------C--AATTTGAACAGAAT------AT---------A-T-CA----------A-TGTA-T-A-AA--TATGT-----ATGATAATAA-A-ttttcatgaacacttc
gi|19 : AAA--TGCT---TA--TTTG--AA-AT-AAT-G-----GA--TTG----CCTCCATAAAACTTTCACTTGGAGTCT-TTGA-TTG-----ATCATATCTTG-TA---ATAGA---A----ACAA------------------G-----------CA--c
gi|2 : tTTACCTCCCT--GCCGAGGTCTTAT-ATACTCCTCGTGAATCT-CTACCAGAGGT-CGCGA-GCA------TGTTC-AGGATT-GGGTCAA-CCATTCGTTGCTTAGTTT-GGTACGCATTGTTATT-TACCACGGAGACTA-CCTTTCA-CTTCTTGCCA-CCCACTCTAG--GTGGATAAATG--TCACA--CATCACAG-ATTGAACT--A-AATAATGAA-ACGAG-A-AC-TGCAT-AG-GTATTT-GA-ATA---T-AGTTTGA--CCACGAG-TT-TAC-AGAGGCAAG-GGCAGAA-TTGATGTTCCC-AGGATTC-ATGCTT-CTTACGCAA-GAAA-TGACT-TTAAATG--AGATGA--GGATCT-TTTCT-GG-ATTGTTGTGC-TTGTTGGAAATGTTTTCAA-T-TT-TACCTA-A-TTCAAG-GAT-TA-TT-TCTGTTGT-CATGAGTCCTTGGACCA-T-ATGGTTTTTTGG-ATT---ATATAAAC-ATG-ACACAAAGTGCATTATCCCTA-CATCCCTGTTACT-TG---ACACA----GTGTGTGTACTAAGTCCT-T-TATCCCTTGG---ACTAC--G--TACATT-ATCTATCTCGAA-ACAAAA-GC-CAC-GAGGA-----AGGGGAGTCCCAGA-CACTTACAT--A--AGCAAGTA-AGA--AACAC---------AC-AACCAA-AAAGTGGAAAA-AA----T-ATCTGC--TGT--A-TT---TCAAAT-T-CT-AAAACTTAGCAGTG-GCAT-GCTATTT--TGTGT----ACGTAACATTTCCA-CA-TT-CACCGC-ATT-----CAATG-GGAGACACATT-------TCTGTT-GCAA-GACA---G-TCAAACGTTTATGGCCGCACATCAGACAAATTC-------------TAGATGTGGTCAGCCTCTG-G-----------GG----------GAAT-------AATTCAGAT--TA--CCCTCAATTGTGTTGTG-ACTGAAATAAGGAAAA--ATTTTGGAT-AATGAA-GATG-ACAAA--TT-------AC-C-------CAACTCTGGACA-TAA-GTA-ATC-TTTCA--AT--AGACA-AA-TGTTAATGAAT-ATTG-T-------AG--------TCACT-C---AACATTATTCCAGTC-TAT-A--TGGTC--------C--A-------------------AT-------TGGTT-CACTGCAACAACA-TGTA-T-ATAG--T-TTTACATAATGATAATAAGA-GC----AGTAC-T-TTAAT--TAT-AT------TGAC-A--GCAATCTTGAT-TTTCTCC---AAGATA-A-TTAA------TA-CAATTGTA-TATT-TCTAA--TGCA-T--TGGAACCTTTGAAATAT---A-G-CT-GCT-T-AAATCTCAGGA-CATC---TT--A-CGTTG--CCGTAACGCGTGTAACAG-GACCC-TGAAACTCTCCAGCAGCTAAA-T-T-----GAC-C-A-TCT---TA-CTGT-CAGA-----A-ACAAG--TGaattggctttag
gi|20 : acaatccatgggagtgaggctcgcatcatctttagataacaattaatGA---A----ACAAGTGCA-------------A-----------CA--CA-------------TT----------T-AT---TTTCATCAGCC-TTCTAAG-TTTTGCTGTGCAAAAAATAGT
gi|21 : -GG-ATA---TCAGTTCAAA-TCT-GAGCTT-TAC-AGAGA-AAA-A----AA-TCG---TTCTC-AT-ACTG-ATGCTT-CTT-CACCA-ACAATTGA-T-TTAA-CG--AAA-GG--GGGATT-Tctttttcatgacacttcctttaacgaaattgtct
gi|22 : -ATGCTC-TCC-CACCA-GCGACTGACT-TTAA-TG--AGA-GA--GGACTT-TCTCG-GG-ATTCGTGTGC-TTGTG-AAAAT-TGTTCAA-TGTC-TACt
gi|23 : -ATGCTT-TCC-CACCA-GCGACTGACT-TTAA-TG---GA-GA--GGACTT-TCTCG-GG-ATTCGTGTGC-TTGTG-AAAAT-TGTTCAA-TGTC-TACtc
gi|24 : A--CT-------------AT----------T-AT---TTTCAGAAGGCATTCTAAG--TT-G-TGTGC-AAAAATATTTtc
gi|25 : cataaacagtttttcaagcctca-TT-AACCTACA-TTCAAG-GAG-TG-TT-TTTGTTGT-TATGAGT--TT-GAATATT-ATtttttcatgaacact
gi|26 : ACT--A-AATAGTGAG-AC-AG-A-AG-TA----CATGTATTT-GG-ATA---CCAG
gi|27 : ATT-------TCTGTT-GC-A-GACA---A-TCAAG-ATTTATGGCC-CACA-CAGACaa
gi|3 : CATTACCTCCCT--GCT-AGGC----T-AT-CTCTTAATTAACAT-CTACCAGAGGT-C---A-GCA-CTG-ATGCTG-ACG--T-CAGTTGG-TCA--CATTGC--ATTTT-GGCACA--------TTATAC----------AGCA--TCAACT-CTTATTA--ACAC----A--GTGAC--AATG--TCA-A--CATCAGAA-AGTGGACT--A-AATAATGAG-AC-AG-A-AC-TG----AA-GTATTT-GG-ATA---TCAGTATGAA-CCA-GAG-TT-TAC-AGAGG-AAG-A----AA-TTG-T-TTCCC-AGAATTATATGCTT-CCT-CATCA-GAAACTGACT-TTAA-TG--AGA-GA--GGACTT-TCTCT-GG-ATTGTTGTGC-TTGTGAAAAAT-TGTTCAA-T-TT-TACCTATA-TTCAAG-GAG-TG-GC-TCTGTTGT-CATGAGT--TT-GACCATT-ATG---TTTTGG-ATT---ATATAAAC-ATGCACACAAAGTGCATT-TCTCTA----------------------ACA----GCGTGTGT-TTAAGTCCTGT-TAT-ACTTGAT--ACAGCTTA--TACATT-ATCTATCTTGGGTACAAAA-CC-CAGAAAGGAATT----AAGAGCTCCATAGCACTTACAT--A--A-CAAGTA-AGA--AAAAC---------AC-AAAC-A-AAAGTGGAAAACATACAGT-ATCTGC--TGT--A-TTTA-TCAAAA-T-CA-AAA------CA-TA-GCAA-GCCATTTG-TGTGT----A---AACATTTCCA-CA-TT-CACC-TTATG-----TAATA-G------CATT-------TCTGCT-GC-G-GACA---T-TCAAG-ATTTATGGCT-TACA-CAGACAAATTCATTAATATTGGGTCAGATGTGGTCAG------------------------------------------AGT--AG-T--TATACCCTCA--TGTGTTGTG-ATGGAAATAAAGAAAA-CATTTT--AT-GATGAA-GATG-ACAAA--TT-------AT-C-------AGACTC-CGA-A-TAA-GTT-ATC-TTTCA--AT--AGACA-AA-CGT-------T-ATTG-T-------A---------TCACC-A---AACATTAT--CAGTC-TAT-A--TGGTC--------C--A-------------------A--------TAA-T-CA----------G-TGTA-T-A-AA--T-TGT-----ATGATAATAA-A-GA----AGTAC-T-T--AT--TAT-CT------T-AC-A--GCAATCTTGTT-TATTTCC---AA-ATA-T-TTAA------TA-CA--TGTA-TA-T-TCTAA--TTGA-T--T-GAATC-TTGAAATAT---GTG-TTAA-T-TAACAT-TCA-GA-CATCT--TT--ATCG-TG--CACTAAC-TGTGTAACAGTGACCC-TG--AGTCTCTAGCAGC--AA-TGT-----GAC-C-ATT-T---TA-C-GT-CAGA-----ACACATA--TGTA---TG--CTGG--GA-ATTAAT-G-----GA--TAC----CCTCCATAAACCTTTCATTTAGAGTGT-TTAA-TTG-----ATGAAATCTCC-TA---TGAGA---A----ACAA------------------A------------------------------------------T-AT---TTTCAGAAGTCCTTCTAAG-TTT-GCTGTGC--AAGATAGTT
gi|4 : atTGA-ATT---TTATAAAC-ATGCACACAAAGTACGTT-TCTC---CAT-CCTG--ATT-TTG--ACACA----GTATGTGT-CTAAGTCCTGT-TAT-CATAGAG--ACAGCTTG----CATT-ATCTATATCGGGTATAAAA-GC-CACAGAG----------------------CACTTACGT--A--T-CAAGTA-AGA--AAAAC---------AC-AAAC-A-AAAGGTGAAAATAT------ATCTGC--TGT--A-TTTA-TCAAAT-T-CT-AAA------CA-TA-GCAT-GTCATTTG-TGTGT----A---AACATTTTCA-CA-TT-CACC-T-ATG-----TAATA-G--GACACATT-------TCTGTT-GC-A-GACA---A-TCAAG-ATTTATGGAT-TACA-CAGAAAGAATCATTAAT--TGGGTCAGATGCGGTCAGCCTCTG-G-----------GG----------G---------------AA-A--TA--CCCTCA--TGTGTTGTG-ATGCAAATAAGGAACA-CCTTTT--AT-GATGAA-GATG-AACAA--TT-------AT-C-------AGATTC-GAA-A-TAA-GTA-ATC-TTTCA--AT--AGACA-AA-TGT-------T-ATTG-TATATTGCA---------TCACC-A---AATATTAT--CAGTC-TAT-A--TGGTC--------C--AAT----------T------GTTCATCAATAA-T-CA----------A-TGTA-T-A-AA--T-TGT-----ATGATAATAA-A-GC----AGTAC-T-T--TA--TAT-CTATATGAT-AC-A--GTAATCTTGTT-CATTTCC---AA-ATA-T-TTAATATATGTA-CG--TGTA-TA-T-TCTAA--TTGA-T--T-GAATC-TTGAAATAT---GTG-TT-A-----ACAT-TCA-GA-CATCT--TT--ATCG-TG--CACTAGC-TGTGTAACAGTGACCCTT---AGTCTCCAGCAGC--AA-TGT-----GGC-CAA-T-T---TA-C-GT-CTGA-----ACACAGA--TGCA---TG--CTGG--GA-ATTAAT-G-----GA--TAC----CCTCCATAAACCTTTCATTCAGAGTGT-TTAA-TTG-----ATGAAATCTCC-TC---AGAGA---A----ACAA------------------A-----------CAAGCTTTTAGCCTCACTATT----------T-AT---TTTCAGAAGGCCTTCGAAG-TTT-GCTGTGC-AAAAATAGTT
gi|5 : CATTACCTTCCTTTGCT-AGGT----A-TT-TTCTTAG---GCATTCTACACGAGGTGC---AAGCAACTG-ATGCTG-ACG--TATGGTTTG-CCA--TAT--C--ATTT--GGCACA--------TTCTAC-------------------------TAGTA-CACAC----A--GTGAA--AATAGCTCA-ATGCATCAGAACAGTGAACT--AGAATAACGAG-AC-AG-ATACGTGTAGTGA-GTATTTTGGCATA---TGAATTTGAA-CCA-GAGCTT-TACCAGAG--AAG-A----AACTTG-T-TCCCCGAGAATTA-GTG--T-CCT-TACCATGAAACTGACTGTTAA-TGTCAGA-GA--GAATTTGTCTCTTGG-ATTGTTGAGC-TTGTAAAAAAT-TGTTCAAAT-TT-TACCTACA-TTCAAG-AAGGTGCTC-TCTGTTGT-CATGATA--GT-GACCCAT-AAG---TTTTGGCATTCAGA-ATAAGCCATGCACACAAAGTGTATT-TCTCTA-CAT-CCTG--ACT-TTTGAACTCA----GTGCGAGT-ttttcatgaacactaccttta
gi|6 : attaaaggaagtgttcatgaaaatatgttatacaacttagggcctttaaatatgtcgtcatttttgcatttgtatattaatgaatttttgataatcattacaagtagctttcctccagtaataatatctatgaaagattagtagctaattttacaattccatggaaagctccatattgataataagAT-GCCATTTG-TGTGT----A---AACATTTCAA--A-TAACACA-A-ACA-----TGATA-G--GGTATAGTAACAA--T-TAAT-GC-A-GACATGCACTCAAC-ATTTATGGC---ATA-AAGACAG-TTTATCAAC--TGGGTCAGACGAGGTCAGCATCTT-A-----------GA----------G--TGAGCTAGAGT--AG-TTCTA--CTCTCA------TTGTG-ACAAAAGTTAGAGAGG-CATTTC--CT-GATGAATGCTG--C-AA--TT--------T-C-------TGAAT------A-TAATGTATTTT-TTTCAGTAT--AAATA-AACTGTA------A-ATTG-C-------A---------TCACC-A---AA-ATT-C--CTGT--TAA-A-----TC--------C--A------------T------GT--------------A----------C-TGTACT-A-CA--T-CA------ATCATAATCA-A-AC------------T--GT--TAT-AT------G-AC-ACGGTGACC-----------CC---AA-TTA-TATTCA------CACCA--TATA-AA-A-TC-AG--TTGA-TTAT-GAATC-CTGAAATATACAGTGCTT-G-TGT-ACAT-TGA-GA-gt
gi|6 : TGCAA-AGTAACCC-----AGTTACCAACAGC--AA-TGT-----GTCTC-A-T-C---TA-C-AT-CAAA-----GCACAGT--TGCA---TG--CTGG--GA-AATAAT-G-----GA--TGCATGACCTTCATAAACCTTTCATTTAGAagttggaggagctcatgcaagagatttttttcttccttgatggtgcattgtttcaattctttcaatttgcacaaaaaccttatccatgaattctaatataaatccattatcttctgctgcaaagtaacccagttaccaacagcaatgtgtctcatctacatcaaagcacagttgcatgctgggaaataatggatgcatgaccttcataaacctttcatttaga
gi|7 : atgccatttgtgtgtaaacatttcaaataacacaaacatgatagggtatagtaacaattaatgcagacatgcactcaacatttatggcataaagacagtttatcaactgggtcagacgaggtcagcatcttagagtgagctagagtagttctactctcattgtgacaaaagttagagaggcatttcctgatgaatgctgcaatttctgaatataatgtatttttttcagtataaataaactgtaaattgcatcaccaaaattcctgttaaatccatgtactgtactacatcaatcataatcaaactgttatatgacacggtgaccccaattatattcacaccatataaaatcagttgattatgaatcctgaaatatacagtgcttgtgtacattgagaagttggaggagctcatgcaagagatttttttcttccttgatggtgcattgtttcaattctttcaatttgcacaaaaaccttatccatgaattctaatataaatccattatcttctgcC-AAAC-A-AAA-TGGAAAAT------T-AT-TGC--TGT--AATTTAATCAAAA-T-TT-AAA------CA--A-TCATTGCAATTTG-TGTGTTTACA---AACATT--CA-C--TT-CAC--T-ATG-----TACTACG--GACACATTGTACATTTCTGTT-GC-A-GACA-----TCAAG-ATGTATGGCT-TACA--AGACAATTTCATTAAT--TGGGTCAGATGTGGTCAGCCTCTG-G-----------GAAAATTCAGATG--T-------AGTC-AG-T--TA--CTC-----TGTGTTGTGCATGG-ATTAAGGAAAA-CATTTT--AT-GATGAA-GATGAACAAAATTT-------AT-C-------AGACTC-AGA-ATTAA-GTA-ATC-TTTC---AT--AGACA-AA-TGT-------T-ATTG-T-------ATAATTGCAGTCACCTC---AAC---AT--CAGTC-TAT-A--TGGT---------C--A------------TTGAAAAATTA-----TAA-TACC----------A-TG-A-TAA-AA--T-TGTTA---ATGATAATAA------------GC-T-T--A-----------------AC-A--GCAAT-TTGTT-TATTTCC----A-ATATT-TTAA------TA-CA--T-TA-TA-TATTTAATTTTAA-T--T-GAATCTTTGAAA-------------------------CA-GACCATCT--TTAAATCG-TGGCCACTAGCTTGCGTAAC-------------AGTCTCCAGCAGC--AATTGT-----GGC-C-A-T-T---TA---GT-CAGA-----ACACAAA--TGCA---TG--CT-G--GA-ATTAAT-G-----GA--TA-----GCTCCAT-ACCCTTTCATTTAGAGTGC-TTAA-TTG------TGAAATCT
gi|8 : GGGTCAGACCTAGTCGGCCTCTGCG-----------GA----------A--A-------A-----------A--ACCTCA--TGTGTTGTG-ATGAAAATAAGGGAAATCATTTC--CC-GATGAA-GATG-GCAAA--TTCGGAGGAAT-TTTCTAATAGAATC-GGA-A-TAA-GTA-ATC-TTTCA--GTGCAAACA-AT-TGT-------T-ATCG-T-------AAATTGAT--TTACC-A---AAATTTAT--CAGTC-TAC-A--TGCTC--------C--A------------T------GTATATCTATAA-T-CA----------A-TGTA-T-A-AA--T-TGT-----ATGACAATAC-A-GC----AGTATGT-T--ATAATAT-CT------T-TT-A--GCAATCTTGTT-TATTTCG---AG-ACA-T-CTAA------TA-CA--T-----A-T-TCTAA--CTGA-T--T-------TTG-----T---GTT-TT-G-----GCAT-TCA-GG-CATCTCTTT--ATCA-TG--CACTAAT-TATGTAACAGTGACCC-A---AA-CTACAGCAGC--AA-TGA-----GTC-T-AAT-T---TA-C-GT-CAGA-----ACACAGA--TGCA---TG--CTGG--GA-ATTCAT-G-----GA---AC----CTTCCATAAACC-------------GT-TTAA-TTG-----ATGACATTTCC-TA---GGAGA---A----ACGAACAAACAAGTTCTTAGCCA-----------CA--CT-------------TT----------TAAT---TTTTAGAAGAC---CT-AG-TTT-
gi|9 : AAA--TTT------ATAC-------AGGACC-GGAGA-TAA-GTA-ATC-TTTCA--ATA-AGACATAA-TGT-------TAATTGATACATGCGA---------TCACC-A---AAC---AT--CAGT--TATAA--TGGTCAATTTTGACGAA------------T------ATAA-----TAA-T-CA----------A-TGTA-T-G-AAGGT-TGT-----AT-ATAATCA-A-CCTTAGAGTCC-TCT--AT--T--------------C-A--G-----TTCTT-TATTTCttcatcctaaagtgtttttttttcatgaacacttaatttagtttttgt
gi|9 : aaCC-C---AGTGCTCATTGGC--AA-TGTTTTGAGGC-C-A-T-TATTTAAC-GTACAGACTTTGACACAGAATTACAGATTGACTTGGTAGACATTAAT-GTTAACGAGCTAC----CT--CATAATCTTCTAATTTAGAGTGTATTAA-TTGAATGCATAAAATCTCTGTAATCAGAGACTTA----ACAA------------------A-----------tgattagggcagccctatcttgtgttatccattaatccaaatagttctttccccaagataattttatacattggggcatgagtagtattcttgaaatatgtcatcatggtgtgaacaaatttcaagaggcggattctcttttcgtgtcatctaggactttcgattgtatgttcacatgttttttagcggccttcgataatcattcccagtgctcattggcaatgttttgaggccattatttaacgtacagactttgacacagaattacagattgacttggtagacattaatgttaacgagctacctcataatcttctaatttagagtgtattaattgaatgcataaaatctctgtaatcagagacttaacaaa
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|13 ): TTTAAAGTAGGTGTTCATGAAAATATGACAAAGGGTTTAAAATTGTCATTTTGATGTATATAATGAATTCTGAAAATAATAAAGATGTAGCTTTCTTCAGTAAGGAGATATCTTATAAAGATTAACAAATCTTTACAATCCATCGAACT
Unaligned ( gi|17 ): AGGAAGTGTTCATGAAAATATGACAAATGGTTTAAAGTATATAATGCTCTTTGAATATCATAGAGATATAGCTTCCTTCGGTAAGGACATATTTCATACGACAAACAAATCTTTACAATCC
Alignments
lowQualScore : 11111111111111111111111111111111111 1111111111111111111111111111111111111111111111111111111111 1111111111111111111111111111111111111111111111111111111111111
lowQualScore : 111111 1 33333 111 33333333333333333333333333333333333 11 3333333 11 11 11 2222 111 1 11 111111 1 111 11 1 111 1111 22222222 1111 3333 333333 3333333 1111111 333333333 222222222 2222222222222 22222222 1111111 2222222 11111 11 99999999999999999999999999999999999999999999999 1111111 1111111 11 55555555555555555555555555555555 11111111 0000000000000000000000000000000000000000000000000000000000 22222 11111 3333333333333333333333 111 111111 111 1 4444444444444444444 11 22222 11111 1111111 11111 11 11111 11111 111 1111 1111111111111111111111111111111111111111111111111111111111111 111 1
lowQualScore : 99 6 666666 3 88888 6 99 111 6 6 6 6 99 6 0 4 6 99 0 7 99 6 88888888888888888888888888888888888 8 88 1111111 11 11 8 11 8 5 99 6 6 99 6 6 6 5555 6 5 5 000 6 6 6 2 6 6 00 444444 3 222 6 1 8 4 4 4 1 5 5 66 5 66 1 5 5 5 1 5 33 5 5 0 5 1 6 777 6 6 6 99 77 999 444 6 4444 3 5 5 5 5 77 99999999 2222 5 3 2 6 6 2 2222 000000 6 1 7 6 6 0000000 5 5555555 6 99 333333333 5 555 44 1 999999999 0 77 77 5 777 7777 5 5555555555555 5 5 77777777 5555 5 8888 2222222 5 777 5555555 4 4 4 33333 4 66 4 0 00 0 55 1 22222222222222222222222222222222222222222222222 77 5 999 5 1 66 5 999 5 5 6666 66 8888888 4 4444444 0 4 0 8 4 4 4 4 66 00 4 4 99999999999999999999999999999999 88888 00000000 55 8 66 1111111111111111111111111111111111111111111111111111111111 4 4 4 4 66 4 11111 555 00000 5 0000000000000000000000 5 66 0 5 000 5 666 666666 5 77 6 5 111 77 5 77 5 1 8888888888888888888 5 5 5 99 99 6 99 44 0 0 44 77777 66 5 22222 0 5 5 0000000 666 5 22222 66 888 11 5 66 5 1 4 11111 66 9999 5 5 22222 5 000 888 0000 4444444444444444444444444444444444444444444444444444444444444 5 000 1 5 5 6
lowQualScore : .. . ...... . ..... . .. ... . . . . .. . . . . .. . . .. . ................................... . .. ....... .. .. . .. . . .. . . .. . . . .... . . . ... . . . . . . .. ...... . ... . . . . . . . . . .. . .. . . . . . . .. . . . . . . ... . . . .. .. ... ... . .... . . . . . .. ........ .... . . . . . . .... ...... . . . . . ....... . ....... . .. ......... . ... .. . ......... . .. .. . ... .... . ............. . . ........ .... . .... ....... . ... ....... . . . ..... . .. . . .. . .. . ............................................... .. . ... . . .. . ... . . .... .. ....... . ....... . . . . . . . . .. .. . . ................................ ..... ........ .. . .. .......................................................... . . . . .. . ..... ... ..... . ...................... . .. . . ... . ... ...... . .. . . ... .. . .. . . ................... . . . .. .. . .. .. . . .. ..... .. . ..... . . . ....... ... . ..... .. ... .. . .. . . . ..... .. .... . . ..... . ... ... .... ............................................................. . ... . . . .
lowQualScore : 22 7 222222 3 55555 7 88 777 7 7 7 7 22 7 7 8 7 22 7 3 22 7 22222222222222222222222222222222222 0 00 8888888 00 00 0 00 0 0 22 7 7 88 7 7 7 8888 7 7 7 000 6 7 7 0 7 7 33 333333 3 555 7 7 9 4 4 4 7 0 0 99 0 99 0 0 7 7 3 7 77 7 7 0 0 0 7 555 7 7 7 22 77 222 000 7 8888 2 7 7 7 7 99 99999999 1111 7 2 5 7 7 5 3333 777777 7 0 3 7 7 6666666 0 3333333 7 22 333333333 7 999 66 4 444444444 7 99 99 7 333 7777 7 1111111111111 0 0 99999999 2222 0 6666 8888888 0 111 6666666 4 4 4 22222 4 99 4 1 88 1 88 4 33333333333333333333333333333333333333333333333 99 0 333 7 4 77 7 444 7 7 7777 11 9999999 4 4444444 1 4 1 9 4 4 4 4 11 66 4 4 77777777777777777777777777777777 66666 77777777 66 9 11 2222222222222222222222222222222222222222222222222222222222 4 4 4 4 11 4 77777 333 88888 0 4444444444444444444444 0 99 2 0 000 7 111 444444 7 99 6 7 999 99 7 99 7 4 7777777777777777777 7 7 7 22 22 7 22 00 1 7 44 00000 99 0 55555 2 0 0 9999999 222 0 55555 11 888 99 6 99 0 9 4 11111 11 4444 0 0 55555 7 000 888 6666 0000000000000000000000000000000000000000000000000000000000000 7 000 9 7 7 7
consensus : NNCATTACCTCCCT--GCT-AGGT----T-AT-CTCTTAGT-AGCAT-CTACCAGAGGT-C---A-GCA-CTG-ATGCTG-ACG--T-CGGTCGG-CCA--CGTTGC--ATTTT-GGCACG--------TT-TAC----------A-C---TCA-CT-CTTAGTA-CACAC----A--GTGAA--AATG--TCA-A--CATCAGAA-AGTGAACT--A-AATAATGAG-AC-AG-A-AC-TG----AA-GTATTT-GG-ATA---TNAGTTTGAA-CCA-GAGCTT-TAC-AGAGG-AAG-A----AA-TTG-T-TTCCC-AGAATTA-ATGCTT-CCT-CACCA-GAAACTGACT-TTAA-TG--AGA-GA--GGANTT-TCTCT-GGA-TTGTTGTGCTT-GTGAAAAAT-TGTTCAA-T-TT-TACCTACATT-CAAGGA-G-TG-TC-TCTGTTGTC-ATGAGT--TT-GACCATT-ATG---TTTTGG-ATT---ATATAAAC-ATGCACACAAAGTGCATT-TCTCTA-CAT-CCTG--ACT-TT---ACACA----GTGTGTGT-CTAAGTCCTGT-TAT-CCTTGA---ACAGCTTG--TACATTA-TCTATCTCGGGTACAAAA-GC-CACAGAGGAATTC-GGAAGAGCCCCAGAGCACTTACAT--A--A-CAAGTA-AGA--AAAAC---------AC-AAAC-A-AAAGTGGAAAATAT----T-ATCTGC--TGT--A-TTTA-TCAAAA-T-CT-AAA------CA-TA-GCAT-GCCATTTG-TGTGT----A---AACATTTCCA-CA-TT-CACC-T-ATG-----TAATA-G--GACACATT-------TCTGTT-GC-A-GACA---A-TCAAG-ATTTATGGCT-TACA-CAGACAAATTCATTAAT--TGGGTCAGACGTGGTCAGCCTCTG-G-----------GA----------G--T-------AGT--AG-T--TA--CCCTCA--TGTGTTGTG-ACGGAAATAAGGAAAA-CATTTT--AT-GATGAA-GATG-ACAAA--TT-------AT-C-------AGACTC-GGA-A-TAA-GTA-ATC-TTTCA--AT--AGACA-AA-TGT-------T-ATTG-T-------A---------TCACC-A---AACATTAT--CAGTC-TAT-A--TGGTC--------C--A------------T------AT-------TAA-T-CA----------A-TGTA-T-A-AA--T-TGT-----ATGATAATAA-A-GC----AGTAC-T-T--AT--TAT-CT------T-AC-A--GCAATCTTGTT-TATTTCC---AA-ATA-T-TTAA------TA-CA--TGTA-TA-T-TCTAA--TTGA-T--T-GAATC-TTGAAATAT---GTG-TT-G-T-T-ACAT-TCA-GA-CATCT--TT--ATCG-TG--CACTAGC-CGTGTAACAGTGACCC-T---AGTCTCCAGCAGC--AA-TGT-----GGC-C-A-T-T---TA-C-GT-CAGA-----ACACAGA--TGCA---TG--CTGG--GA-ATTAAT-G-----GA--TAC----CCTCCATAAACCTTTCATTTAGAGTGT-TTAA-TTG-----ATGAAATCTCC-TA---AGAGA---A----ACAA------------------A-----------CA--CT-------------TT----------T-AT---TTTCAGAAGGCATTCTAAG-TTT-GCTGTGC-AAAAATAGTT
Reference ( family-366 ) : NNCATTACCTCCCT--GCT-AGGT----T-AT-CTCTTAGT-AGCAT-CTACCAGAGGT-C---A-GCA-CTG-ATGCTG-ACG--T-CGGTCGG-CCA--CGTTGC--ATTTT-GGCACG--------TT-TAC----------A-C---TCA-CT-CTTAGTA-CACAC----A--GTGAA--AATG--TCA-A--CATCAGAA-AGTGAACT--A-AATAATGAG-AC-AG-A-AC-TG----AA-GTATTT-GG-ATA---TNAGTTTGAA-CCA-GAGCTT-TAC-AGAGG-AAG-A----AA-TTG-T-TTCCC-AGAATTA-ATGCTT-CCT-CACCA-GAAACTGACT-TTAA-TG--AGA-GA--GGANTT-TCTCT-GGA-TTGTTGTGCTT-GTGAAAAAT-TGTTCAA-T-TT-TACCTACATT-CAAGGA-G-TG-TC-TCTGTTGTC-ATGAGT--TT-GACCATT-ATG---TTTTGG-ATT---ATATAAAC-ATGCACACAAAGTGCATT-TCTCTA-CAT-CCTG--ACT-TT---ACACA----GTGTGTGT-CTAAGTCCTGT-TAT-CCTTGA---ACAGCTTG--TACATTA-TCTATCTCGGGTACAAAA-GC-CACAGAGGAATTC-GGAAGAGCCCCAGAGCACTTACAT--A--A-CAAGTA-AGA--AAAAC---------AC-AAAC-A-AAAGTGGAAAATAT----T-ATCTGC--TGT--A-TTTA-TCAAAA-T-CT-AAA------CA-TA-GCAT-GCCATTTG-TGTGT----A---AACATTTCCA-CA-TT-CACC-T-ATG-----TAATA-G--GACACATT-------TCTGTT-GC-A-GACA---A-TCAAG-ATTTATGGCT-TACA-CAGACAAATTCATTAAT--TGGGTCAGACGTGGTCAGCCTCTG-G-----------GA----------G--T-------AGT--AG-T--TA--CCCTCA--TGTGTTGTG-ACGGAAATAAGGAAAA-CATTTT--AT-GATGAA-GATG-ACAAA--TT-------AT-C-------AGACTC-GGA-A-TAA-GTA-ATC-TTTCA--AT--AGACA-AA-TGT-------T-ATTG-T-------A---------TCACC-A---AACATTAT--CAGTC-TAT-A--TGGTC--------C--A------------T------AT-------TAA-T-CA----------A-TGTA-T-A-AA--T-TGT-----ATGATAATAA-A-GC----AGTAC-T-T--AT--TAT-CT------T-AC-A--GCAATCTTGTT-TATTTCC---AA-ATA-T-TTAA------TA-CA--TGTA-TA-T-TCTAA--TTGA-T--T-GAATC-TTGAAATAT---GTG-TT-G-T-T-ACAT-TCA-GA-CATCT--TT--ATCG-TG--CACTAGC-CGTGTAACAGTGACCC-T---AGTCTCCAGCAGC--AA-TGT-----GGC-C-A-T-T---TA-C-GT-CAGA-----ACACAGA--TGCA---TG--CTGG--GA-ATTAAT-G-----GA--TAC----CCTCCATAAACCTTTCATTTAGAGTGT-TTAA-TTG-----ATGAAATCTCC-TA---AGAGA---A----ACAA------------------A-----------CA--CT-------------TT----------T-AT---TTTCAGAAGGCATTCTAAG-TTT-GCTGTGC-AAAAATAGTT
gi|1 : ATTACC--CCT--TCT-AGGT----TTATTCTCTTGG-----AT-CTCCCAGAGG--C---A-GCA-CTG-ATGCTGGACG--T-CA-TTGG-CCA--CATTGC---TTTT-G-CACA--------TT------------------------CT-CTTAGTAACACAC-------GTGAA--AACG--TCA-A--CATCAGAA-AGTGAACCTAA-AATACTGAGGAC--G-A-AC-TG----AA-GTATTT-GG-ATACTATAAATTTGAATCCA-GAGTTTATAC--GAGG-AAG-A----AAATTG-T-TTTCC-AGAATTATATATTTTCCT-CACCA-GAAACTGACT-TTAA-TG--AGA--ATTGAAATT-TCTAT-GGAATTATTGAGCTTTGTTAAAA-T-TGTTCAA-T-TTATACC-ACATTTCAAGAAAG-TG-TTATCTGTTGTCCATGAGT--TT-AACCATTGATG---TTTTGG-AT----AGATAGAC-ATACACACAAAG-GTATT-TCTGTAGCAT-CCTG--ACG-TT---TGACAACGTGTGTGTGT-CTA-GTCCTGTGCAG-C--TGA----CAGC------ACATTAATCTATCTCCGG-ACAAAA-GC-CACAGAGG-ATTCGGGAAGAGCCCCAGAGCACTCACATTCAGTA-GAGGCA-TGACGAAAACGAAATGAGAACTAGAC-ATAAAGAAGAA---AT----TGATCTGC--TGCTGA-TTTA-TCAAAATT-CTAAAA------CA-T---TAT-G-CACTTGTTGTGTTTCAA---AACATGTCCA-CAGTT-CACC-T-A-GTCAATTAATG-G--AACACATT-------TCTGTT-GC-A-GACA---A-TCAAG-AATTATGGCT-TACA-CAGACCAATTCA-TAATG-TGCGT-AGATGTGGTCA-CCTCTG-GGGAAAATTCAAGA----------G--T-------AGTG-AA-T--TA--CTC-------TGTTGTG-ATG--AATAATGAAAA-CATTTT--TTAGATGAA-GATG-A-AAA--TT-------AT-C-------AGACTC-GGA-A-TAA--TA-ATCTTTTCA--AT--AGACA-AA-TGTTATGTA-T-ATTG-C-------A---------TCACC-A---AACATCA----GGTCTTAT-GATTGGTT--------C--A------------TGAAA--ATTAA----TAA-T-CA----------ATTGTA-T-A-AA--T-TGTA----ATGATAATAA-ACGC----AGTAC-T-----T--TATACT------T-ACTA--GCAATCTTGTTCTATTTTCACAAA-GTA-T-TTAA------TA-CA--TGTATTATT-TCTAA--TTGATT--T-GAATC-TTGAAA-AT---GTG----G-T-TAACAT-TCA-GA-CATCT--TT--AT-G-TT--CGC--GC-CG------AGT------------TCTCCAGCAGC--AA-TGT-----GGC-C-A-A-T---TA-C-GT-CAGA-----ACACAGA--TGCA---TGA-CT-G--GA-AT--ATGG-----GA--TAC----CTCCCATAAACCTTTC-TTTAGAGTGT-TTAATTTG-----ATGAAATCT-C-TA---AGTGA---ACACTACAA------------------A-----------CA--GT-------------TTAGGCCATCACT-ATTTATTTCAGAAGGCATTCTAAGTTTT-GCTGTGC-AAAA
gi|10 : gtattaagaagtgttcatgaaaatctatgacaagggtttaaaattgtcattttgaatgtaatatgattttgaaaaccatacgatgtgctttccccgtcaaggagatttttcataaagatctaactaattgtacaatccatggagctgccatattgataaattaATTACCTCCCT--GCT-AGGT----T-AT-CTCT-----AGCAT-CTACCAGAGGT-C---A-GCA-CTGTATGCTG-ACG--T-CAGTTGGGCCA--CAT-GC--ATTTTTGGCACA--------TT------------------------CT-CTTAGTA--ACAC----AATGTGAA--AATG--TCA-A--CATCAGAA-A-TGAACT--A-AATAATGAG-AC-CGAA-AC-TG----AA-GTATTT-GG-ATA---TGAATTTGAA-CCA-GAGTTT-TAC-AGAGA-AGGAA----AA-TAG-T-TTCC---AAATTA-GTGTTT-CCT-CACCA-GAAACTGgaataagttatttctatgaacacttcc
gi|11 : taaaggaagtgttctgaaaatatgaacaaaggtttttaaaattgttcatttgatgtatataatgaattttgaaaatcatacaagatgtagctttcttcagtaaggagatatttcataaagattaactaatttttacaatccatggaagctgccatatgaataaaatC-AT-CACACAAAGTGTATT-TCTCTA-CAT-CCTG--ACT----------------------------------T-TGA-CCTTGA----CAGCTTA-----ATTA--CTATCTCG--TACAAAAAGCTCACAGAGGAATTC-GGAAGAGCCCCAGAGCACTTACAT--C--A-GAAGTATAAA--AAAACC--------AC-AAA-----------------T----T-ATCTGCCTTGT--A-TT-A-TCAACA-TTCT-AAA------CA-TAAGCAT-TCCATTTG-TGTTT----ACA-AACATTTTCAACA-TT-CACA-T-A-G-----TAATT-G--GATACATT-------TCTGTTTGC-AAGACC---A-TCA-G-ATTTATGGCT-TACA-CA-ACAAA-TCAT
gi|12 : -ATGCTT-CCT-GACCA-GCAACTGACT-TTAA-TG--AGA-GA--GTAATT-TCTAT-GGA-TTGGTATGGTT-GT-AAATAT-TGTTCAA-T-TT-TACCTACATT-CAAGGA-G-TG-TC-TCTGTTGTC-ATGAGT--TT----------------------------ATATAAAC-ATGCACACAAAGTGTATT-TCTCTA-CAT-CCTG--ACTGTG---ACACA----GTGTGTGT-CTAAGTCCTGT-TAT-CCTTGAAACACAGCTAGCTTACATTA-TCTATCTCAGGTACGAAA-GC-CAGAGAGGaac
gi|14 : gT--A--A-CAAGTA-AGT--AAAAC---------AC-AAAC-A-AAAATGAAAAATAT-----------C--TGT--G-TTCA-T-----------AAA--------------AT-GCCAATTG-TGTGT----A---AACATTTCCA-CG-CA-TACC-T-ATG-----TGATA-G--AACACAAT-------TCTGTT-TG-A-TACA---A-TCAAG-AGTTATGGCG-T--A-CAGAT-AATTCATcagaacactt
gi|15 : ATTACCTCCCT--GCT-GGGT----T-AT-CTCC---T-AGCAT-CTAGAAGACAG-C---A-GCA-CTA-ATGTTG-ACG--T-CAGTAAG-AAA--CG-TAT--ATTTT-GGCACG--------
gi|16 : tctttcaatccttgggagctgccatattgataaattgTAAT-G-----GA--TAC----CCTCCATAAACCTTTCAATTAG--TGT-TTAA-TTG-----ATGAAATCTCT-TA---AGAGA---A----ACAT------------------AGTTTTTAGCCTCA--CTA------------TT----------T-AT---TTTCAGAAGGCATTCTAAG-TTT-GCTGTGC-AAAAATATTTgtgaacagtatcaacgcttatta
gi|18 : A--TT-------AT-C-------AGACTC-G-A-A-TAA-G---A-C-TTTCA--TT--AAAC-------------------TG-C-------A---------TCACC-ATCAAACAT-----CAGTC-TATCA--TGGTC--------C--AATTTGAACAGAAT------AT---------A-T-CA----------A-TGTA-T-A-AA--TATGT-----ATGATAATAA-A-ttttcatgaacacttc
gi|19 : AAA--TGCT---TA--TTTG--AA-AT-AAT-G-----GA--TTG----CCTCCATAAAACTTTCACTTGGAGTCT-TTGA-TTG-----ATCATATCTTG-TA---ATAGA---A----ACAA------------------G-----------CA--c
gi|2 : tTTACCTCCCT--GCCGAGGTCTTAT-ATACTCCTCGTGAATCT-CTACCAGAGGT-CGCGA-GCA------TGTTC-AGGATT-GGGTCAA-CCATTCGTTGCTTAGTTT-GGTACGCATTGTTATT-TACCACGGAGACTA-CCTTTCA-CTTCTTGCCA-CCCACTCTAG--GTGGATAAATG--TCACA--CATCACAG-ATTGAACT--A-AATAATGAA-ACGAG-A-AC-TGCAT-AG-GTATTT-GA-ATA---T-AGTTTGA--CCACGAG-TT-TAC-AGAGGCAAG-GGCAGAA-TTGATGTTCCC-AGGATTC-ATGCTT-CTTACGCAA-GAAA-TGACT-TTAAATG--AGATGA--GGATCT-TTTCT-GGA-TTGTTGTGCTT-GTTGGAAATGTTTTCAA-T-TT-TACCTA-ATT-CAAGGA-T-TA-TT-TCTGTTGTC-ATGAGTCCTTGGACCA-T-ATGGTTTTTTGG-ATT---ATATAAAC-ATG-ACACAAAGTGCATTATCCCTA-CATCCCTGTTACT-TG---ACACA----GTGTGTGTACTAAGTCCT-T-TATCCCTTGG---ACTAC--G--TACATTA-TCTATCTCGAA-ACAAAA-GC-CAC-GAGGAA-----GGGGAGTCCCAGA-CACTTACAT--A--AGCAAGTA-AGA--AACAC---------AC-AACCAA-AAAGTGGAAAA-AA----T-ATCTGC--TGT--A-TT---TCAAAT-T-CT-AAAACTTAGCAGTG-GCAT-GCTATTT--TGTGT----ACGTAACATTTCCA-CA-TT-CACCGC-ATT-----CAATG-GGAGACACATT-------TCTGTT-GCAA-GACA---G-TCAAACGTTTATGGCCGCACATCAGACAAATTC-------------TAGATGTGGTCAGCCTCTG-G-----------GG----------GAAT-------AATTCAGAT--TA--CCCTCAATTGTGTTGTG-ACTGAAATAAGGAAAA--ATTTTGGAT-AATGAA-GATG-ACAAA--TT-------AC-C-------CAACTCTGGACA-TAA-GTA-ATC-TTTCA--AT--AGACA-AA-TGTTAATGAAT-ATTG-T-------AG--------TCACT-C---AACATTATTCCAGTC-TAT-A--TGGTC--------C--A-------------------AT-------TGGTT-CACTGCAACAACA-TGTA-T-ATAG--T-TTTACATAATGATAATAAGA-GC----AGTAC-T-TTAAT--TAT-AT------TGAC-A--GCAATCTTGAT-TTTCTCC---AAGATA-A-TTAA------TA-CAATTGTA-TATT-TCTAA--TGCA-T--TGGAACCTTTGAAATAT---A-G-CT-GCT-T-AAATCTCAGGA-CATC---TT--A-CGTTG--CCGTAACGCGTGTAACAG-GACCC-TGAAACTCTCCAGCAGCTAAA-T-T-----GAC-C-A-TCT---TA-CTGT-CAGA-----A-ACAAG--TGaattggctttag
gi|20 : acaatccatgggagtgaggctcgcatcatctttagataacaattaatGA---A----ACAAGTGCA-------------A-----------CA--CA-------------TT----------T-AT---TTTCATCAGCC-TTCTAAG-TTTTGCTGTGCAAAAAATAGT
gi|21 : -GG-ATA---TCAGTTCAAA-TCT-GAGCTT-TAC-AGAGA-AAA-A----AA-TCG---TTCTC-AT-ACTG-ATGCTT-CTT-CACCA-ACAATTGA-T-TTAA-CG--AAA-GG--GGGATT-Tctttttcatgacacttcctttaacgaaattgtct
gi|22 : -ATGCTC-TCC-CACCA-GCGACTGACT-TTAA-TG--AGA-GA--GGACTT-TCTCG-GGA-TTCGTGTGCTT-GTG-AAAAT-TGTTCAA-TGTC-TACt
gi|23 : -ATGCTT-TCC-CACCA-GCGACTGACT-TTAA-TG---GA-GA--GGACTT-TCTCG-GGA-TTCGTGTGCTT-GTG-AAAAT-TGTTCAA-TGTC-TACtc
gi|24 : A--CT-------------AT----------T-AT---TTTCAGAAGGCATTCTAAG--TT-G-TGTGC-AAAAATATTTtc
gi|25 : cataaacagtttttcaagcctca-TT-AACCTACATT-CAAGGA-G-TG-TT-TTTGTTGTT-ATGAGT--TT-GAATATT-ATtttttcatgaacact
gi|26 : ACT--A-AATAGTGAG-AC-AG-A-AG-TA----CATGTATTT-GG-ATA---CCAG
gi|27 : ATT-------TCTGTT-GC-A-GACA---A-TCAAG-ATTTATGGCC-CACA-CAGACaa
gi|3 : CATTACCTCCCT--GCT-AGGC----T-AT-CTCTTAATTAACAT-CTACCAGAGGT-C---A-GCA-CTG-ATGCTG-ACG--T-CAGTTGG-TCA--CATTGC--ATTTT-GGCACA--------TTATAC----------AGCA--TCAACT-CTTATTA--ACAC----A--GTGAC--AATG--TCA-A--CATCAGAA-AGTGGACT--A-AATAATGAG-AC-AG-A-AC-TG----AA-GTATTT-GG-ATA---TCAGTATGAA-CCA-GAG-TT-TAC-AGAGG-AAG-A----AA-TTG-T-TTCCC-AGAATTATATGCTT-CCT-CATCA-GAAACTGACT-TTAA-TG--AGA-GA--GGACTT-TCTCT-GGA-TTGTTGTGCTT-GTGAAAAAT-TGTTCAA-T-TT-TACCTATATT-CAAGGA-G-TG-GC-TCTGTTGTC-ATGAGT--TT-GACCATT-ATG---TTTTGG-ATT---ATATAAAC-ATGCACACAAAGTGCATT-TCTCTA----------------------ACA----GCGTGTGT-TTAAGTCCTGT-TAT-ACTTGAT--ACAGCTTA--TACATTA-TCTATCTTGGGTACAAAA-CC-CAGAAAGGAATT----AAGAGCTCCATAGCACTTACAT--A--A-CAAGTA-AGA--AAAAC---------AC-AAAC-A-AAAGTGGAAAACATACAGT-ATCTGC--TGT--A-TTTA-TCAAAA-T-CA-AAA------CA-TA-GCAA-GCCATTTG-TGTGT----A---AACATTTCCA-CA-TT-CACC-TTATG-----TAATA-G------CATT-------TCTGCT-GC-G-GACA---T-TCAAG-ATTTATGGCT-TACA-CAGACAAATTCATTAATATTGGGTCAGATGTGGTCAG------------------------------------------AGT--AG-T--TATACCCTCA--TGTGTTGTG-ATGGAAATAAAGAAAA-CATTTT--AT-GATGAA-GATG-ACAAA--TT-------AT-C-------AGACTC-CGA-A-TAA-GTT-ATC-TTTCA--AT--AGACA-AA-CGT-------T-ATTG-T-------A---------TCACC-A---AACATTAT--CAGTC-TAT-A--TGGTC--------C--A-------------------A--------TAA-T-CA----------G-TGTA-T-A-AA--T-TGT-----ATGATAATAA-A-GA----AGTAC-T-T--AT--TAT-CT------T-AC-A--GCAATCTTGTT-TATTTCC---AA-ATA-T-TTAA------TA-CA--TGTA-TA-T-TCTAA--TTGA-T--T-GAATC-TTGAAATAT---GTG-TTAA-T-TAACAT-TCA-GA-CATCT--TT--ATCG-TG--CACTAAC-TGTGTAACAGTGACCC-TG--AGTCTCTAGCAGC--AA-TGT-----GAC-C-ATT-T---TA-C-GT-CAGA-----ACACATA--TGTA---TG--CTGG--GA-ATTAAT-G-----GA--TAC----CCTCCATAAACCTTTCATTTAGAGTGT-TTAA-TTG-----ATGAAATCTCC-TA---TGAGA---A----ACAA------------------A------------------------------------------T-AT---TTTCAGAAGTCCTTCTAAG-TTT-GCTGTGC--AAGATAGTT
gi|4 : atTGA-ATT---TTATAAAC-ATGCACACAAAGTACGTT-TCTC---CAT-CCTG--ATT-TTG--ACACA----GTATGTGT-CTAAGTCCTGT-TAT-CATAGAG--ACAGCTTG----CATTA-TCTATATCGGGTATAAAA-GC-CACAGAG----------------------CACTTACGT--A--T-CAAGTA-AGA--AAAAC---------AC-AAAC-A-AAAGGTGAAAATAT------ATCTGC--TGT--A-TTTA-TCAAAT-T-CT-AAA------CA-TA-GCAT-GTCATTTG-TGTGT----A---AACATTTTCA-CA-TT-CACC-T-ATG-----TAATA-G--GACACATT-------TCTGTT-GC-A-GACA---A-TCAAG-ATTTATGGAT-TACA-CAGAAAGAATCATTAAT--TGGGTCAGATGCGGTCAGCCTCTG-G-----------GG----------G---------------AA-A--TA--CCCTCA--TGTGTTGTG-ATGCAAATAAGGAACA-CCTTTT--AT-GATGAA-GATG-AACAA--TT-------AT-C-------AGATTC-GAA-A-TAA-GTA-ATC-TTTCA--AT--AGACA-AA-TGT-------T-ATTG-TATATTGCA---------TCACC-A---AATATTAT--CAGTC-TAT-A--TGGTC--------C--AAT----------T------GTTCATCAATAA-T-CA----------A-TGTA-T-A-AA--T-TGT-----ATGATAATAA-A-GC----AGTAC-T-T--TA--TAT-CTATATGAT-AC-A--GTAATCTTGTT-CATTTCC---AA-ATA-T-TTAATATATGTA-CG--TGTA-TA-T-TCTAA--TTGA-T--T-GAATC-TTGAAATAT---GTG-TT-A-----ACAT-TCA-GA-CATCT--TT--ATCG-TG--CACTAGC-TGTGTAACAGTGACCCTT---AGTCTCCAGCAGC--AA-TGT-----GGC-CAA-T-T---TA-C-GT-CTGA-----ACACAGA--TGCA---TG--CTGG--GA-ATTAAT-G-----GA--TAC----CCTCCATAAACCTTTCATTCAGAGTGT-TTAA-TTG-----ATGAAATCTCC-TC---AGAGA---A----ACAA------------------A-----------CAAGCTTTTAGCCTCACTATT----------T-AT---TTTCAGAAGGCCTTCGAAG-TTT-GCTGTGC-AAAAATAGTT
gi|5 : CATTACCTTCCTTTGCT-AGGT----A-TT-TTCTTAG---GCATTCTACACGAGGTGC---AAGCAACTG-ATGCTG-ACG--TATGGTTTG-CCA--TAT--C--ATTT--GGCACA--------TTCTAC-------------------------TAGTA-CACAC----A--GTGAA--AATAGCTCA-ATGCATCAGAACAGTGAACT--AGAATAACGAG-AC-AG-ATACGTGTAGTGA-GTATTTTGGCATA---TGAATTTGAA-CCA-GAGCTT-TACCAGAG--AAG-A----AACTTG-T-TCCCCGAGAATTA-GTG--T-CCT-TACCATGAAACTGACTGTTAA-TGTCAGA-GA--GAATTTGTCTCTTGGA-TTGTTGAGCTT-GTAAAAAAT-TGTTCAAAT-TT-TACCTACATT-CAAGAA-GGTGCTC-TCTGTTGTC-ATGATA--GT-GACCCAT-AAG---TTTTGGCATTCAGA-ATAAGCCATGCACACAAAGTGTATT-TCTCTA-CAT-CCTG--ACT-TTTGAACTCA----GTGCGAGT-ttttcatgaacactaccttta
gi|6 : attaaaggaagtgttcatgaaaatatgttatacaacttagggcctttaaatatgtcgtcatttttgcatttgtatattaatgaatttttgataatcattacaagtagctttcctccagtaataatatctatgaaagattagtagctaattttacaattccatggaaagctccatattgataataagAT-GCCATTTG-TGTGT----A---AACATTTCAA--A-TAACACA-A-ACA-----TGATA-G--GGTATAGTAACAA--T-TAAT-GC-A-GACATGCACTCAAC-ATTTATGGC---ATA-AAGACAG-TTTATCAAC--TGGGTCAGACGAGGTCAGCATCTT-A-----------GA----------G--TGAGCTAGAGT--AG-TTCTA--CTCTCA------TTGTG-ACAAAAGTTAGAGAGG-CATTTC--CT-GATGAATGCTG--C-AA--TT--------T-C-------TGAAT------A-TAATGTATTTT-TTTCAGTAT--AAATA-AACTGTA------A-ATTG-C-------A---------TCACC-A---AA-ATT-C--CTGT--TAA-A-----TC--------C--A------------T------GT--------------A----------C-TGTACT-A-CA--T-CA------ATCATAATCA-A-AC------------T--GT--TAT-AT------G-AC-ACGGTGACC-----------CC---AA-TTA-TATTCA------CACCA--TATA-AA-A-TC-AG--TTGA-TTAT-GAATC-CTGAAATATACAGTGCTT-G-TGT-ACAT-TGA-GA-gt
gi|6 : TGCAA-AGTAACCC-----AGTTACCAACAGC--AA-TGT-----GTCTC-A-T-C---TA-C-AT-CAAA-----GCACAGT--TGCA---TG--CTGG--GA-AATAAT-G-----GA--TGCATGACCTTCATAAACCTTTCATTTAGAagttggaggagctcatgcaagagatttttttcttccttgatggtgcattgtttcaattctttcaatttgcacaaaaaccttatccatgaattctaatataaatccattatcttctgctgcaaagtaacccagttaccaacagcaatgtgtctcatctacatcaaagcacagttgcatgctgggaaataatggatgcatgaccttcataaacctttcatttaga
gi|7 : atgccatttgtgtgtaaacatttcaaataacacaaacatgatagggtatagtaacaattaatgcagacatgcactcaacatttatggcataaagacagtttatcaactgggtcagacgaggtcagcatcttagagtgagctagagtagttctactctcattgtgacaaaagttagagaggcatttcctgatgaatgctgcaatttctgaatataatgtatttttttcagtataaataaactgtaaattgcatcaccaaaattcctgttaaatccatgtactgtactacatcaatcataatcaaactgttatatgacacggtgaccccaattatattcacaccatataaaatcagttgattatgaatcctgaaatatacagtgcttgtgtacattgagaagttggaggagctcatgcaagagatttttttcttccttgatggtgcattgtttcaattctttcaatttgcacaaaaaccttatccatgaattctaatataaatccattatcttctgcC-AAAC-A-AAA-TGGAAAAT------T-AT-TGC--TGT--AATTTAATCAAAA-T-TT-AAA------CA--A-TCATTGCAATTTG-TGTGTTTACA---AACATT--CA-C--TT-CAC--T-ATG-----TACTACG--GACACATTGTACATTTCTGTT-GC-A-GACA-----TCAAG-ATGTATGGCT-TACA--AGACAATTTCATTAAT--TGGGTCAGATGTGGTCAGCCTCTG-G-----------GAAAATTCAGATG--T-------AGTC-AG-T--TA--CTC-----TGTGTTGTGCATGG-ATTAAGGAAAA-CATTTT--AT-GATGAA-GATGAACAAAATTT-------AT-C-------AGACTC-AGA-ATTAA-GTA-ATC-TTTC---AT--AGACA-AA-TGT-------T-ATTG-T-------ATAATTGCAGTCACCTC---AAC---AT--CAGTC-TAT-A--TGGT---------C--A------------TTGAAAAATTA-----TAA-TACC----------A-TG-A-TAA-AA--T-TGTTA---ATGATAATAA------------GC-T-T--A-----------------AC-A--GCAAT-TTGTT-TATTTCC----A-ATATT-TTAA------TA-CA--T-TA-TA-TATTTAATTTTAA-T--T-GAATCTTTGAAA-------------------------CA-GACCATCT--TTAAATCG-TGGCCACTAGCTTGCGTAAC-------------AGTCTCCAGCAGC--AATTGT-----GGC-C-A-T-T---TA---GT-CAGA-----ACACAAA--TGCA---TG--CT-G--GA-ATTAAT-G-----GA--TA-----GCTCCAT-ACCCTTTCATTTAGAGTGC-TTAA-TTG------TGAAATCT
gi|8 : GGGTCAGACCTAGTCGGCCTCTGCG-----------GA----------A--A-------A-----------A--ACCTCA--TGTGTTGTG-ATGAAAATAAGGGAAATCATTTC--CC-GATGAA-GATG-GCAAA--TTCGGAGGAAT-TTTCTAATAGAATC-GGA-A-TAA-GTA-ATC-TTTCA--GTGCAAACA-AT-TGT-------T-ATCG-T-------AAATTGAT--TTACC-A---AAATTTAT--CAGTC-TAC-A--TGCTC--------C--A------------T------GTATATCTATAA-T-CA----------A-TGTA-T-A-AA--T-TGT-----ATGACAATAC-A-GC----AGTATGT-T--ATAATAT-CT------T-TT-A--GCAATCTTGTT-TATTTCG---AG-ACA-T-CTAA------TA-CA--T-----A-T-TCTAA--CTGA-T--T-------TTG-----T---GTT-TT-G-----GCAT-TCA-GG-CATCTCTTT--ATCA-TG--CACTAAT-TATGTAACAGTGACCC-A---AA-CTACAGCAGC--AA-TGA-----GTC-T-AAT-T---TA-C-GT-CAGA-----ACACAGA--TGCA---TG--CTGG--GA-ATTCAT-G-----GA---AC----CTTCCATAAACC-------------GT-TTAA-TTG-----ATGACATTTCC-TA---GGAGA---A----ACGAACAAACAAGTTCTTAGCCA-----------CA--CT-------------TT----------TAAT---TTTTAGAAGAC---CT-AG-TTT-
gi|9 : AAA--TTT------ATAC-------AGGACC-GGAGA-TAA-GTA-ATC-TTTCA--ATA-AGACATAA-TGT-------TAATTGATACATGCGA---------TCACC-A---AAC---AT--CAGT--TATAA--TGGTCAATTTTGACGAA------------T------ATAA-----TAA-T-CA----------A-TGTA-T-G-AAGGT-TGT-----AT-ATAATCA-A-CCTTAGAGTCC-TCT--AT--T--------------C-A--G-----TTCTT-TATTTCttcatcctaaagtgtttttttttcatgaacacttaatttagtttttgt
gi|9 : aaCC-C---AGTGCTCATTGGC--AA-TGTTTTGAGGC-C-A-T-TATTTAAC-GTACAGACTTTGACACAGAATTACAGATTGACTTGGTAGACATTAAT-GTTAACGAGCTAC----CT--CATAATCTTCTAATTTAGAGTGTATTAA-TTGAATGCATAAAATCTCTGTAATCAGAGACTTA----ACAA------------------A-----------tgattagggcagccctatcttgtgttatccattaatccaaatagttctttccccaagataattttatacattggggcatgagtagtattcttgaaatatgtcatcatggtgtgaacaaatttcaagaggcggattctcttttcgtgtcatctaggactttcgattgtatgttcacatgttttttagcggccttcgataatcattcccagtgctcattggcaatgttttgaggccattatttaacgtacagactttgacacagaattacagattgacttggtagacattaatgttaacgagctacctcataatcttctaatttagagtgtattaattgaatgcataaaatctctgtaatcagagacttaacaaa
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|13 ): TTTAAAGTAGGTGTTCATGAAAATATGACAAAGGGTTTAAAATTGTCATTTTGATGTATATAATGAATTCTGAAAATAATAAAGATGTAGCTTTCTTCAGTAAGGAGATATCTTATAAAGATTAACAAATCTTTACAATCCATCGAACT
Unaligned ( gi|17 ): AGGAAGTGTTCATGAAAATATGACAAATGGTTTAAAGTATATAATGCTCTTTGAATATCATAGAGATATAGCTTCCTTCGGTAAGGACATATTTCATACGACAAACAAATCTTTACAATCC
Alignments
lowQualScore : 11111111111111111111111111111111111 1111111111111111111111111111111111111111111111111111111111 1111111111111111111111111111111111111111111111111111111111111
lowQualScore : 111111 1 33333 111 33333333333333333333333333333333333 11 3333333 11 11 11 2222 111 1 11 111111 1 111 11 1 111 1111 22222222 1111 3333 333333 3333333 1111111 333333333 222222222 2222222222222 22222222 1111111 2222222 11111 11 99999999999999999999999999999999999999999999999 1111111 1111111 11 55555555555555555555555555555555 11111111 0000000000000000000000000000000000000000000000000000000000 22222 11111 3333333333333333333333 111 111111 111 1 4444444444444444444 11 22222 11111 1111111 11111 11 11111 11111 111 1111 1111111111111111111111111111111111111111111111111111111111111 111 1
lowQualScore : 99 6 666666 3 88888 6 99 111 6 6 6 6 99 6 0 4 6 99 0 7 99 6 88888888888888888888888888888888888 8 88 1111111 11 11 8 11 8 5 99 6 6 99 6 6 6 5555 6 5 5 000 6 6 6 2 6 6 00 444444 3 222 6 1 8 4 4 4 1 5 5 66 5 66 1 5 5 5 1 5 33 5 5 0 5 1 6 777 6 6 6 99 77 999 444 6 4444 3 5 5 5 5 77 99999999 2222 5 3 2 6 6 2 2222 000000 6 1 7 6 6 0000000 5 5555555 6 99 333333333 5 555 44 1 999999999 0 77 77 5 777 7777 5 5555555555555 5 5 77777777 5555 5 8888 2222222 5 777 5555555 4 4 4 33333 4 66 4 0 00 0 55 1 22222222222222222222222222222222222222222222222 77 5 999 5 1 66 5 999 5 5 6666 66 8888888 4 4444444 0 4 0 8 4 4 4 4 66 00 4 4 99999999999999999999999999999999 88888 00000000 55 8 66 1111111111111111111111111111111111111111111111111111111111 4 4 4 4 66 4 11111 555 00000 5 0000000000000000000000 5 66 0 5 000 5 666 666666 5 77 6 5 111 77 5 77 5 1 8888888888888888888 5 5 5 99 99 6 99 44 0 0 44 77777 66 5 22222 0 5 5 0000000 666 5 22222 66 888 11 5 66 5 1 4 11111 66 9999 5 5 22222 5 000 888 0000 4444444444444444444444444444444444444444444444444444444444444 5 000 1 5 5 6
lowQualScore : .. . ...... . ..... . .. ... . . . . .. . . . . .. . . .. . ................................... . .. ....... .. .. . .. . . .. . . .. . . . .... . . . ... . . . . . . .. ...... . ... . . . . . . . . . .. . .. . . . . . . .. . . . . . . ... . . . .. .. ... ... . .... . . . . . .. ........ .... . . . . . . .... ...... . . . . . ....... . ....... . .. ......... . ... .. . ......... . .. .. . ... .... . ............. . . ........ .... . .... ....... . ... ....... . . . ..... . .. . . .. . .. . ............................................... .. . ... . . .. . ... . . .... .. ....... . ....... . . . . . . . . .. .. . . ................................ ..... ........ .. . .. .......................................................... . . . . .. . ..... ... ..... . ...................... . .. . . ... . ... ...... . .. . . ... .. . .. . . ................... . . . .. .. . .. .. . . .. ..... .. . ..... . . . ....... ... . ..... .. ... .. . .. . . . ..... .. .... . . ..... . ... ... .... ............................................................. . ... . . . .
lowQualScore : 22 7 222222 3 55555 7 88 777 7 7 7 7 22 7 7 8 7 22 7 3 22 7 22222222222222222222222222222222222 0 00 8888888 00 00 0 00 0 0 22 7 7 88 7 7 7 8888 7 7 7 000 6 7 7 0 7 7 33 333333 3 555 7 7 9 4 4 4 7 0 0 99 0 99 0 0 7 7 3 7 77 7 7 0 0 0 7 555 7 7 7 22 77 222 000 7 8888 2 7 7 7 7 99 99999999 1111 7 2 5 7 7 5 3333 777777 7 0 3 7 7 6666666 0 3333333 7 22 333333333 7 999 66 4 444444444 7 99 99 7 333 7777 7 1111111111111 0 0 99999999 2222 0 6666 8888888 0 111 6666666 4 4 4 22222 4 99 4 1 88 1 88 4 33333333333333333333333333333333333333333333333 99 0 333 7 4 77 7 444 7 7 7777 11 9999999 4 4444444 1 4 1 9 4 4 4 4 11 66 4 4 77777777777777777777777777777777 66666 77777777 66 9 11 2222222222222222222222222222222222222222222222222222222222 4 4 4 4 11 4 77777 333 88888 0 4444444444444444444444 0 99 2 0 000 7 111 444444 7 99 6 7 999 99 7 99 7 4 7777777777777777777 7 7 7 22 22 7 22 00 1 7 44 00000 99 0 55555 2 0 0 9999999 222 0 55555 11 888 99 6 99 0 9 4 11111 11 4444 0 0 55555 7 000 888 6666 0000000000000000000000000000000000000000000000000000000000000 7 000 9 7 7 7
consensus : NNCATTACCTCCCT--GCT-AGGT----T-AT-CTCTTAGT-AGCAT-CTACCAGAGGT-C---A-GCA-CTG-ATGCTG-ACG--T-CGGTCGG-CCA--CGTTGC--ATTTT-GGCACG--------TT-TAC----------A-C---TCA-CT-CTTAGTA-CACAC----A--GTGAA--AATG--TCA-A--CATCAGAA-AGTGAACT--A-AATAATGAG-AC-AG-A-AC-TG----AA-GTATTT-GG-ATA---TNAGTTTGAA-CCA-GAGCTT-TAC-AGAGG-AAG-A----AA-TTG-T-TTCCC-AGAATTA-ATGCTT-CCT-CACCA-GAAACTGACT-TTAA-TG--AGA-GA--GGANTT-TCTCT-GGA-TTGTTGTGCTT-GTGAAAAAT-TGTTCAA-T-TT-TACCTACATT-CAAGGA-G-TG-TC-TCTGTTGTC-ATGAGT--TT-GACCATT-ATG---TTTTGG-ATT---ATATAAAC-ATGCACACAAAGTGCATT-TCTCTA-CAT-CCTG--ACT-TT---ACACA----GTGTGTGT-CTAAGTCCTGT-TAT-CCTTGA---ACAGCTTG--TACATTA-TCTATCTCGGGTACAAAA-GC-CACAGAGGAATTC-GGAAGAGCCCCAGAGCACTTACAT--A--A-CAAGTA-AGA--AAAAC---------AC-AAAC-A-AAAGTGGAAAATAT----T-ATCTGC--TGT--A-TTTA-TCAAAA-T-CT-AAA------CA-TA-GCAT-GCCATTTG-TGTGT----A---AACATTTCCA-CA-TT-CACC-T-ATG-----TAATA-G--GACACATT-------TCTGTT-GC-A-GACA---A-TCAAG-ATTTATGGCT-TACA-CAGACAAATTCATTAAT--TGGGTCAGACGTGGTCAGCCTCTG-G-----------GA----------G--T-------AGT--AG-T--TA--CCCTCA--TGTGTTGTG-ACGGAAATAAGGAAAA-CATTTT--AT-GATGAA-GATG-ACAAA--TT-------AT-C-------AGACTC-GGA-A-TAA-GTA-ATC-TTTCA--AT--AGACA-AA-TGT-------T-ATTG-T-------A---------TCACC-A---AACATTAT--CAGTC-TAT-A--TGGTC--------C--A------------T------AT-------TAA-T-CA----------A-TGTA-T-A-AA--T-TGT-----ATGATAATAA-A-GC----AGTAC-T-T--AT--TAT-CT------T-AC-A--GCAATCTTGTT-TATTTCC---AA-ATA-T-TTAA------TA-CA--TGTA-TA-T-TCTAA--TTGA-T--T-GAATC-TTGAAATAT---GTG-TT-G-T-T-ACAT-TCA-GA-CATCT--TT--ATCG-TG--CACTAGC-CGTGTAACAGTGACCC-T---AGTCTCCAGCAGC--AA-TGT-----GGC-C-A-T-T---TA-C-GT-CAGA-----ACACAGA--TGCA---TG--CTGG--GA-ATTAAT-G-----GA--TAC----CCTCCATAAACCTTTCATTTAGAGTGT-TTAA-TTG-----ATGAAATCTCC-TA---AGAGA---A----ACAA------------------A-----------CA--CT-------------TT----------T-AT---TTTCAGAAGGCATTCTAAG-TTT-GCTGTGC-AAAAATAGTT
Reference ( family-366 ) : NNCATTACCTCCCT--GCT-AGGT----T-AT-CTCTTAGT-AGCAT-CTACCAGAGGT-C---A-GCA-CTG-ATGCTG-ACG--T-CGGTCGG-CCA--CGTTGC--ATTTT-GGCACG--------TT-TAC----------A-C---TCA-CT-CTTAGTA-CACAC----A--GTGAA--AATG--TCA-A--CATCAGAA-AGTGAACT--A-AATAATGAG-AC-AG-A-AC-TG----AA-GTATTT-GG-ATA---TNAGTTTGAA-CCA-GAGCTT-TAC-AGAGG-AAG-A----AA-TTG-T-TTCCC-AGAATTA-ATGCTT-CCT-CACCA-GAAACTGACT-TTAA-TG--AGA-GA--GGANTT-TCTCT-GGA-TTGTTGTGCTT-GTGAAAAAT-TGTTCAA-T-TT-TACCTACATT-CAAGGA-G-TG-TC-TCTGTTGTC-ATGAGT--TT-GACCATT-ATG---TTTTGG-ATT---ATATAAAC-ATGCACACAAAGTGCATT-TCTCTA-CAT-CCTG--ACT-TT---ACACA----GTGTGTGT-CTAAGTCCTGT-TAT-CCTTGA---ACAGCTTG--TACATTA-TCTATCTCGGGTACAAAA-GC-CACAGAGGAATTC-GGAAGAGCCCCAGAGCACTTACAT--A--A-CAAGTA-AGA--AAAAC---------AC-AAAC-A-AAAGTGGAAAATAT----T-ATCTGC--TGT--A-TTTA-TCAAAA-T-CT-AAA------CA-TA-GCAT-GCCATTTG-TGTGT----A---AACATTTCCA-CA-TT-CACC-T-ATG-----TAATA-G--GACACATT-------TCTGTT-GC-A-GACA---A-TCAAG-ATTTATGGCT-TACA-CAGACAAATTCATTAAT--TGGGTCAGACGTGGTCAGCCTCTG-G-----------GA----------G--T-------AGT--AG-T--TA--CCCTCA--TGTGTTGTG-ACGGAAATAAGGAAAA-CATTTT--AT-GATGAA-GATG-ACAAA--TT-------AT-C-------AGACTC-GGA-A-TAA-GTA-ATC-TTTCA--AT--AGACA-AA-TGT-------T-ATTG-T-------A---------TCACC-A---AACATTAT--CAGTC-TAT-A--TGGTC--------C--A------------T------AT-------TAA-T-CA----------A-TGTA-T-A-AA--T-TGT-----ATGATAATAA-A-GC----AGTAC-T-T--AT--TAT-CT------T-AC-A--GCAATCTTGTT-TATTTCC---AA-ATA-T-TTAA------TA-CA--TGTA-TA-T-TCTAA--TTGA-T--T-GAATC-TTGAAATAT---GTG-TT-G-T-T-ACAT-TCA-GA-CATCT--TT--ATCG-TG--CACTAGC-CGTGTAACAGTGACCC-T---AGTCTCCAGCAGC--AA-TGT-----GGC-C-A-T-T---TA-C-GT-CAGA-----ACACAGA--TGCA---TG--CTGG--GA-ATTAAT-G-----GA--TAC----CCTCCATAAACCTTTCATTTAGAGTGT-TTAA-TTG-----ATGAAATCTCC-TA---AGAGA---A----ACAA------------------A-----------CA--CT-------------TT----------T-AT---TTTCAGAAGGCATTCTAAG-TTT-GCTGTGC-AAAAATAGTT
gi|1 : ATTACC--CCT--TCT-AGGT----TTATTCTCTTGG-----AT-CTCCCAGAGG--C---A-GCA-CTG-ATGCTGGACG--T-CA-TTGG-CCA--CATTGC---TTTT-G-CACA--------TT------------------------CT-CTTAGTAACACAC-------GTGAA--AACG--TCA-A--CATCAGAA-AGTGAACCTAA-AATACTGAGGAC--G-A-AC-TG----AA-GTATTT-GG-ATACTATAAATTTGAATCCA-GAGTTTATAC--GAGG-AAG-A----AAATTG-T-TTTCC-AGAATTATATATTTTCCT-CACCA-GAAACTGACT-TTAA-TG--AGA--ATTGAAATT-TCTAT-GGAATTATTGAGCTTTGTTAAAA-T-TGTTCAA-T-TTATACC-ACATTTCAAGAAAG-TG-TTATCTGTTGTCCATGAGT--TT-AACCATTGATG---TTTTGG-AT----AGATAGAC-ATACACACAAAG-GTATT-TCTGTAGCAT-CCTG--ACG-TT---TGACAACGTGTGTGTGT-CTA-GTCCTGTGCAG-C--TGA----CAGC------ACATTAATCTATCTCCGG-ACAAAA-GC-CACAGAGG-ATTCGGGAAGAGCCCCAGAGCACTCACATTCAGTA-GAGGCA-TGACGAAAACGAAATGAGAACTAGAC-ATAAAGAAGAA---AT----TGATCTGC--TGCTGA-TTTA-TCAAAATT-CTAAAA------CA-T---TAT-G-CACTTGTTGTGTTTCAA---AACATGTCCA-CAGTT-CACC-T-A-GTCAATTAATG-G--AACACATT-------TCTGTT-GC-A-GACA---A-TCAAG-AATTATGGCT-TACA-CAGACCAATTCA-TAATG-TGCGT-AGATGTGGTCA-CCTCTG-GGGAAAATTCAAGA----------G--T-------AGTG-AA-T--TA--CTC-------TGTTGTG-ATG--AATAATGAAAA-CATTTT--TTAGATGAA-GATG-A-AAA--TT-------AT-C-------AGACTC-GGA-A-TAA--TA-ATCTTTTCA--AT--AGACA-AA-TGTTATGTA-T-ATTG-C-------A---------TCACC-A---AACATCA----GGTCTTAT-GATTGGTT--------C--A------------TGAAA--ATTAA----TAA-T-CA----------ATTGTA-T-A-AA--T-TGTA----ATGATAATAA-ACGC----AGTAC-T-----T--TATACT------T-ACTA--GCAATCTTGTTCTATTTTCACAAA-GTA-T-TTAA------TA-CA--TGTATTATT-TCTAA--TTGATT--T-GAATC-TTGAAA-AT---GTG----G-T-TAACAT-TCA-GA-CATCT--TT--AT-G-TT--CGC--GC-CG------AGT------------TCTCCAGCAGC--AA-TGT-----GGC-C-A-A-T---TA-C-GT-CAGA-----ACACAGA--TGCA---TGA-CT-G--GA-AT--ATGG-----GA--TAC----CTCCCATAAACCTTTC-TTTAGAGTGT-TTAATTTG-----ATGAAATCT-C-TA---AGTGA---ACACTACAA------------------A-----------CA--GT-------------TTAGGCCATCACT-ATTTATTTCAGAAGGCATTCTAAGTTTT-GCTGTGC-AAAA
gi|10 : gtattaagaagtgttcatgaaaatctatgacaagggtttaaaattgtcattttgaatgtaatatgattttgaaaaccatacgatgtgctttccccgtcaaggagatttttcataaagatctaactaattgtacaatccatggagctgccatattgataaattaATTACCTCCCT--GCT-AGGT----T-AT-CTCT-----AGCAT-CTACCAGAGGT-C---A-GCA-CTGTATGCTG-ACG--T-CAGTTGGGCCA--CAT-GC--ATTTTTGGCACA--------TT------------------------CT-CTTAGTA--ACAC----AATGTGAA--AATG--TCA-A--CATCAGAA-A-TGAACT--A-AATAATGAG-AC-CGAA-AC-TG----AA-GTATTT-GG-ATA---TGAATTTGAA-CCA-GAGTTT-TAC-AGAGA-AGGAA----AA-TAG-T-TTCC---AAATTA-GTGTTT-CCT-CACCA-GAAACTGgaataagttatttctatgaacacttcc
gi|11 : taaaggaagtgttctgaaaatatgaacaaaggtttttaaaattgttcatttgatgtatataatgaattttgaaaatcatacaagatgtagctttcttcagtaaggagatatttcataaagattaactaatttttacaatccatggaagctgccatatgaataaaatC-AT-CACACAAAGTGTATT-TCTCTA-CAT-CCTG--ACT----------------------------------T-TGA-CCTTGA----CAGCTTA-----ATTA--CTATCTCG--TACAAAAAGCTCACAGAGGAATTC-GGAAGAGCCCCAGAGCACTTACAT--C--A-GAAGTATAAA--AAAACC--------AC-AAA-----------------T----T-ATCTGCCTTGT--A-TT-A-TCAACA-TTCT-AAA------CA-TAAGCAT-TCCATTTG-TGTTT----ACA-AACATTTTCAACA-TT-CACA-T-A-G-----TAATT-G--GATACATT-------TCTGTTTGC-AAGACC---A-TCA-G-ATTTATGGCT-TACA-CA-ACAAA-TCAT
gi|12 : -ATGCTT-CCT-GACCA-GCAACTGACT-TTAA-TG--AGA-GA--GTAATT-TCTAT-GGA-TTGGTATGGTT-GT-AAATAT-TGTTCAA-T-TT-TACCTACATT-CAAGGA-G-TG-TC-TCTGTTGTC-ATGAGT--TT----------------------------ATATAAAC-ATGCACACAAAGTGTATT-TCTCTA-CAT-CCTG--ACTGTG---ACACA----GTGTGTGT-CTAAGTCCTGT-TAT-CCTTGAAACACAGCTAGCTTACATTA-TCTATCTCAGGTACGAAA-GC-CAGAGAGGaac
gi|14 : gT--A--A-CAAGTA-AGT--AAAAC---------AC-AAAC-A-AAAATGAAAAATAT-----------C--TGT--G-TTCA-T-----------AAA--------------AT-GCCAATTG-TGTGT----A---AACATTTCCA-CG-CA-TACC-T-ATG-----TGATA-G--AACACAAT-------TCTGTT-TG-A-TACA---A-TCAAG-AGTTATGGCG-T--A-CAGAT-AATTCATcagaacactt
gi|15 : ATTACCTCCCT--GCT-GGGT----T-AT-CTCC---T-AGCAT-CTAGAAGACAG-C---A-GCA-CTA-ATGTTG-ACG--T-CAGTAAG-AAA--CG-TAT--ATTTT-GGCACG--------
gi|16 : tctttcaatccttgggagctgccatattgataaattgTAAT-G-----GA--TAC----CCTCCATAAACCTTTCAATTAG--TGT-TTAA-TTG-----ATGAAATCTCT-TA---AGAGA---A----ACAT------------------AGTTTTTAGCCTCA--CTA------------TT----------T-AT---TTTCAGAAGGCATTCTAAG-TTT-GCTGTGC-AAAAATATTTgtgaacagtatcaacgcttatta
gi|18 : A--TT-------AT-C-------AGACTC-G-A-A-TAA-G---A-C-TTTCA--TT--AAAC-------------------TG-C-------A---------TCACC-ATCAAACAT-----CAGTC-TATCA--TGGTC--------C--AATTTGAACAGAAT------AT---------A-T-CA----------A-TGTA-T-A-AA--TATGT-----ATGATAATAA-A-ttttcatgaacacttc
gi|19 : AAA--TGCT---TA--TTTG--AA-AT-AAT-G-----GA--TTG----CCTCCATAAAACTTTCACTTGGAGTCT-TTGA-TTG-----ATCATATCTTG-TA---ATAGA---A----ACAA------------------G-----------CA--c
gi|2 : tTTACCTCCCT--GCCGAGGTCTTAT-ATACTCCTCGTGAATCT-CTACCAGAGGT-CGCGA-GCA------TGTTC-AGGATT-GGGTCAA-CCATTCGTTGCTTAGTTT-GGTACGCATTGTTATT-TACCACGGAGACTA-CCTTTCA-CTTCTTGCCA-CCCACTCTAG--GTGGATAAATG--TCACA--CATCACAG-ATTGAACT--A-AATAATGAA-ACGAG-A-AC-TGCAT-AG-GTATTT-GA-ATA---T-AGTTTGA--CCACGAG-TT-TAC-AGAGGCAAG-GGCAGAA-TTGATGTTCCC-AGGATTC-ATGCTT-CTTACGCAA-GAAA-TGACT-TTAAATG--AGATGA--GGATCT-TTTCT-GGA-TTGTTGTGCTT-GTTGGAAATGTTTTCAA-T-TT-TACCTA-ATT-CAAGGA-T-TA-TT-TCTGTTGTC-ATGAGTCCTTGGACCA-T-ATGGTTTTTTGG-ATT---ATATAAAC-ATG-ACACAAAGTGCATTATCCCTA-CATCCCTGTTACT-TG---ACACA----GTGTGTGTACTAAGTCCT-T-TATCCCTTGG---ACTAC--G--TACATTA-TCTATCTCGAA-ACAAAA-GC-CAC-GAGGAA-----GGGGAGTCCCAGA-CACTTACAT--A--AGCAAGTA-AGA--AACAC---------AC-AACCAA-AAAGTGGAAAA-AA----T-ATCTGC--TGT--A-TT---TCAAAT-T-CT-AAAACTTAGCAGTG-GCAT-GCTATTT--TGTGT----ACGTAACATTTCCA-CA-TT-CACCGC-ATT-----CAATG-GGAGACACATT-------TCTGTT-GCAA-GACA---G-TCAAACGTTTATGGCCGCACATCAGACAAATTC-------------TAGATGTGGTCAGCCTCTG-G-----------GG----------GAAT-------AATTCAGAT--TA--CCCTCAATTGTGTTGTG-ACTGAAATAAGGAAAA--ATTTTGGAT-AATGAA-GATG-ACAAA--TT-------AC-C-------CAACTCTGGACA-TAA-GTA-ATC-TTTCA--AT--AGACA-AA-TGTTAATGAAT-ATTG-T-------AG--------TCACT-C---AACATTATTCCAGTC-TAT-A--TGGTC--------C--A-------------------AT-------TGGTT-CACTGCAACAACA-TGTA-T-ATAG--T-TTTACATAATGATAATAAGA-GC----AGTAC-T-TTAAT--TAT-AT------TGAC-A--GCAATCTTGAT-TTTCTCC---AAGATA-A-TTAA------TA-CAATTGTA-TATT-TCTAA--TGCA-T--TGGAACCTTTGAAATAT---A-G-CT-GCT-T-AAATCTCAGGA-CATC---TT--A-CGTTG--CCGTAACGCGTGTAACAG-GACCC-TGAAACTCTCCAGCAGCTAAA-T-T-----GAC-C-A-TCT---TA-CTGT-CAGA-----A-ACAAG--TGaattggctttag
gi|20 : acaatccatgggagtgaggctcgcatcatctttagataacaattaatGA---A----ACAAGTGCA-------------A-----------CA--CA-------------TT----------T-AT---TTTCATCAGCC-TTCTAAG-TTTTGCTGTGCAAAAAATAGT
gi|21 : -GG-ATA---TCAGTTCAAA-TCT-GAGCTT-TAC-AGAGA-AAA-A----AA-TCG---TTCTC-AT-ACTG-ATGCTT-CTT-CACCA-ACAATTGA-T-TTAA-CG--AAA-GG--GGGATT-Tctttttcatgacacttcctttaacgaaattgtct
gi|22 : -ATGCTC-TCC-CACCA-GCGACTGACT-TTAA-TG--AGA-GA--GGACTT-TCTCG-GGA-TTCGTGTGCTT-GTG-AAAAT-TGTTCAA-TGTC-TACt
gi|23 : -ATGCTT-TCC-CACCA-GCGACTGACT-TTAA-TG---GA-GA--GGACTT-TCTCG-GGA-TTCGTGTGCTT-GTG-AAAAT-TGTTCAA-TGTC-TACtc
gi|24 : A--CT-------------AT----------T-AT---TTTCAGAAGGCATTCTAAG--TT-G-TGTGC-AAAAATATTTtc
gi|25 : cataaacagtttttcaagcctca-TT-AACCTACATT-CAAGGA-G-TG-TT-TTTGTTGTT-ATGAGT--TT-GAATATT-ATtttttcatgaacact
gi|26 : ACT--A-AATAGTGAG-AC-AG-A-AG-TA----CATGTATTT-GG-ATA---CCAG
gi|27 : ATT-------TCTGTT-GC-A-GACA---A-TCAAG-ATTTATGGCC-CACA-CAGACaa
gi|3 : CATTACCTCCCT--GCT-AGGC----T-AT-CTCTTAATTAACAT-CTACCAGAGGT-C---A-GCA-CTG-ATGCTG-ACG--T-CAGTTGG-TCA--CATTGC--ATTTT-GGCACA--------TTATAC----------AGCA--TCAACT-CTTATTA--ACAC----A--GTGAC--AATG--TCA-A--CATCAGAA-AGTGGACT--A-AATAATGAG-AC-AG-A-AC-TG----AA-GTATTT-GG-ATA---TCAGTATGAA-CCA-GAG-TT-TAC-AGAGG-AAG-A----AA-TTG-T-TTCCC-AGAATTATATGCTT-CCT-CATCA-GAAACTGACT-TTAA-TG--AGA-GA--GGACTT-TCTCT-GGA-TTGTTGTGCTT-GTGAAAAAT-TGTTCAA-T-TT-TACCTATATT-CAAGGA-G-TG-GC-TCTGTTGTC-ATGAGT--TT-GACCATT-ATG---TTTTGG-ATT---ATATAAAC-ATGCACACAAAGTGCATT-TCTCTA----------------------ACA----GCGTGTGT-TTAAGTCCTGT-TAT-ACTTGAT--ACAGCTTA--TACATTA-TCTATCTTGGGTACAAAA-CC-CAGAAAGGAATT----AAGAGCTCCATAGCACTTACAT--A--A-CAAGTA-AGA--AAAAC---------AC-AAAC-A-AAAGTGGAAAACATACAGT-ATCTGC--TGT--A-TTTA-TCAAAA-T-CA-AAA------CA-TA-GCAA-GCCATTTG-TGTGT----A---AACATTTCCA-CA-TT-CACC-TTATG-----TAATA-G------CATT-------TCTGCT-GC-G-GACA---T-TCAAG-ATTTATGGCT-TACA-CAGACAAATTCATTAATATTGGGTCAGATGTGGTCAG------------------------------------------AGT--AG-T--TATACCCTCA--TGTGTTGTG-ATGGAAATAAAGAAAA-CATTTT--AT-GATGAA-GATG-ACAAA--TT-------AT-C-------AGACTC-CGA-A-TAA-GTT-ATC-TTTCA--AT--AGACA-AA-CGT-------T-ATTG-T-------A---------TCACC-A---AACATTAT--CAGTC-TAT-A--TGGTC--------C--A-------------------A--------TAA-T-CA----------G-TGTA-T-A-AA--T-TGT-----ATGATAATAA-A-GA----AGTAC-T-T--AT--TAT-CT------T-AC-A--GCAATCTTGTT-TATTTCC---AA-ATA-T-TTAA------TA-CA--TGTA-TA-T-TCTAA--TTGA-T--T-GAATC-TTGAAATAT---GTG-TTAA-T-TAACAT-TCA-GA-CATCT--TT--ATCG-TG--CACTAAC-TGTGTAACAGTGACCC-TG--AGTCTCTAGCAGC--AA-TGT-----GAC-C-ATT-T---TA-C-GT-CAGA-----ACACATA--TGTA---TG--CTGG--GA-ATTAAT-G-----GA--TAC----CCTCCATAAACCTTTCATTTAGAGTGT-TTAA-TTG-----ATGAAATCTCC-TA---TGAGA---A----ACAA------------------A------------------------------------------T-AT---TTTCAGAAGTCCTTCTAAG-TTT-GCTGTGC--AAGATAGTT
gi|4 : atTGA-ATT---TTATAAAC-ATGCACACAAAGTACGTT-TCTC---CAT-CCTG--ATT-TTG--ACACA----GTATGTGT-CTAAGTCCTGT-TAT-CATAGAG--ACAGCTTG----CATTA-TCTATATCGGGTATAAAA-GC-CACAGAG----------------------CACTTACGT--A--T-CAAGTA-AGA--AAAAC---------AC-AAAC-A-AAAGGTGAAAATAT------ATCTGC--TGT--A-TTTA-TCAAAT-T-CT-AAA------CA-TA-GCAT-GTCATTTG-TGTGT----A---AACATTTTCA-CA-TT-CACC-T-ATG-----TAATA-G--GACACATT-------TCTGTT-GC-A-GACA---A-TCAAG-ATTTATGGAT-TACA-CAGAAAGAATCATTAAT--TGGGTCAGATGCGGTCAGCCTCTG-G-----------GG----------G---------------AA-A--TA--CCCTCA--TGTGTTGTG-ATGCAAATAAGGAACA-CCTTTT--AT-GATGAA-GATG-AACAA--TT-------AT-C-------AGATTC-GAA-A-TAA-GTA-ATC-TTTCA--AT--AGACA-AA-TGT-------T-ATTG-TATATTGCA---------TCACC-A---AATATTAT--CAGTC-TAT-A--TGGTC--------C--AAT----------T------GTTCATCAATAA-T-CA----------A-TGTA-T-A-AA--T-TGT-----ATGATAATAA-A-GC----AGTAC-T-T--TA--TAT-CTATATGAT-AC-A--GTAATCTTGTT-CATTTCC---AA-ATA-T-TTAATATATGTA-CG--TGTA-TA-T-TCTAA--TTGA-T--T-GAATC-TTGAAATAT---GTG-TT-A-----ACAT-TCA-GA-CATCT--TT--ATCG-TG--CACTAGC-TGTGTAACAGTGACCCTT---AGTCTCCAGCAGC--AA-TGT-----GGC-CAA-T-T---TA-C-GT-CTGA-----ACACAGA--TGCA---TG--CTGG--GA-ATTAAT-G-----GA--TAC----CCTCCATAAACCTTTCATTCAGAGTGT-TTAA-TTG-----ATGAAATCTCC-TC---AGAGA---A----ACAA------------------A-----------CAAGCTTTTAGCCTCACTATT----------T-AT---TTTCAGAAGGCCTTCGAAG-TTT-GCTGTGC-AAAAATAGTT
gi|5 : CATTACCTTCCTTTGCT-AGGT----A-TT-TTCTTAG---GCATTCTACACGAGGTGC---AAGCAACTG-ATGCTG-ACG--TATGGTTTG-CCA--TAT--C--ATTT--GGCACA--------TTCTAC-------------------------TAGTA-CACAC----A--GTGAA--AATAGCTCA-ATGCATCAGAACAGTGAACT--AGAATAACGAG-AC-AG-ATACGTGTAGTGA-GTATTTTGGCATA---TGAATTTGAA-CCA-GAGCTT-TACCAGAG--AAG-A----AACTTG-T-TCCCCGAGAATTA-GTG--T-CCT-TACCATGAAACTGACTGTTAA-TGTCAGA-GA--GAATTTGTCTCTTGGA-TTGTTGAGCTT-GTAAAAAAT-TGTTCAAAT-TT-TACCTACATT-CAAGAA-GGTGCTC-TCTGTTGTC-ATGATA--GT-GACCCAT-AAG---TTTTGGCATTCAGA-ATAAGCCATGCACACAAAGTGTATT-TCTCTA-CAT-CCTG--ACT-TTTGAACTCA----GTGCGAGT-ttttcatgaacactaccttta
gi|6 : attaaaggaagtgttcatgaaaatatgttatacaacttagggcctttaaatatgtcgtcatttttgcatttgtatattaatgaatttttgataatcattacaagtagctttcctccagtaataatatctatgaaagattagtagctaattttacaattccatggaaagctccatattgataataagAT-GCCATTTG-TGTGT----A---AACATTTCAA--A-TAACACA-A-ACA-----TGATA-G--GGTATAGTAACAA--T-TAAT-GC-A-GACATGCACTCAAC-ATTTATGGC---ATA-AAGACAG-TTTATCAAC--TGGGTCAGACGAGGTCAGCATCTT-A-----------GA----------G--TGAGCTAGAGT--AG-TTCTA--CTCTCA------TTGTG-ACAAAAGTTAGAGAGG-CATTTC--CT-GATGAATGCTG--C-AA--TT--------T-C-------TGAAT------A-TAATGTATTTT-TTTCAGTAT--AAATA-AACTGTA------A-ATTG-C-------A---------TCACC-A---AA-ATT-C--CTGT--TAA-A-----TC--------C--A------------T------GT--------------A----------C-TGTACT-A-CA--T-CA------ATCATAATCA-A-AC------------T--GT--TAT-AT------G-AC-ACGGTGACC-----------CC---AA-TTA-TATTCA------CACCA--TATA-AA-A-TC-AG--TTGA-TTAT-GAATC-CTGAAATATACAGTGCTT-G-TGT-ACAT-TGA-GA-gt
gi|6 : TGCAA-AGTAACCC-----AGTTACCAACAGC--AA-TGT-----GTCTC-A-T-C---TA-C-AT-CAAA-----GCACAGT--TGCA---TG--CTGG--GA-AATAAT-G-----GA--TGCATGACCTTCATAAACCTTTCATTTAGAagttggaggagctcatgcaagagatttttttcttccttgatggtgcattgtttcaattctttcaatttgcacaaaaaccttatccatgaattctaatataaatccattatcttctgctgcaaagtaacccagttaccaacagcaatgtgtctcatctacatcaaagcacagttgcatgctgggaaataatggatgcatgaccttcataaacctttcatttaga
gi|7 : atgccatttgtgtgtaaacatttcaaataacacaaacatgatagggtatagtaacaattaatgcagacatgcactcaacatttatggcataaagacagtttatcaactgggtcagacgaggtcagcatcttagagtgagctagagtagttctactctcattgtgacaaaagttagagaggcatttcctgatgaatgctgcaatttctgaatataatgtatttttttcagtataaataaactgtaaattgcatcaccaaaattcctgttaaatccatgtactgtactacatcaatcataatcaaactgttatatgacacggtgaccccaattatattcacaccatataaaatcagttgattatgaatcctgaaatatacagtgcttgtgtacattgagaagttggaggagctcatgcaagagatttttttcttccttgatggtgcattgtttcaattctttcaatttgcacaaaaaccttatccatgaattctaatataaatccattatcttctgcC-AAAC-A-AAA-TGGAAAAT------T-AT-TGC--TGT--AATTTAATCAAAA-T-TT-AAA------CA--A-TCATTGCAATTTG-TGTGTTTACA---AACATT--CA-C--TT-CAC--T-ATG-----TACTACG--GACACATTGTACATTTCTGTT-GC-A-GACA-----TCAAG-ATGTATGGCT-TACA--AGACAATTTCATTAAT--TGGGTCAGATGTGGTCAGCCTCTG-G-----------GAAAATTCAGATG--T-------AGTC-AG-T--TA--CTC-----TGTGTTGTGCATGG-ATTAAGGAAAA-CATTTT--AT-GATGAA-GATGAACAAAATTT-------AT-C-------AGACTC-AGA-ATTAA-GTA-ATC-TTTC---AT--AGACA-AA-TGT-------T-ATTG-T-------ATAATTGCAGTCACCTC---AAC---AT--CAGTC-TAT-A--TGGT---------C--A------------TTGAAAAATTA-----TAA-TACC----------A-TG-A-TAA-AA--T-TGTTA---ATGATAATAA------------GC-T-T--A-----------------AC-A--GCAAT-TTGTT-TATTTCC----A-ATATT-TTAA------TA-CA--T-TA-TA-TATTTAATTTTAA-T--T-GAATCTTTGAAA-------------------------CA-GACCATCT--TTAAATCG-TGGCCACTAGCTTGCGTAAC-------------AGTCTCCAGCAGC--AATTGT-----GGC-C-A-T-T---TA---GT-CAGA-----ACACAAA--TGCA---TG--CT-G--GA-ATTAAT-G-----GA--TA-----GCTCCAT-ACCCTTTCATTTAGAGTGC-TTAA-TTG------TGAAATCT
gi|8 : GGGTCAGACCTAGTCGGCCTCTGCG-----------GA----------A--A-------A-----------A--ACCTCA--TGTGTTGTG-ATGAAAATAAGGGAAATCATTTC--CC-GATGAA-GATG-GCAAA--TTCGGAGGAAT-TTTCTAATAGAATC-GGA-A-TAA-GTA-ATC-TTTCA--GTGCAAACA-AT-TGT-------T-ATCG-T-------AAATTGAT--TTACC-A---AAATTTAT--CAGTC-TAC-A--TGCTC--------C--A------------T------GTATATCTATAA-T-CA----------A-TGTA-T-A-AA--T-TGT-----ATGACAATAC-A-GC----AGTATGT-T--ATAATAT-CT------T-TT-A--GCAATCTTGTT-TATTTCG---AG-ACA-T-CTAA------TA-CA--T-----A-T-TCTAA--CTGA-T--T-------TTG-----T---GTT-TT-G-----GCAT-TCA-GG-CATCTCTTT--ATCA-TG--CACTAAT-TATGTAACAGTGACCC-A---AA-CTACAGCAGC--AA-TGA-----GTC-T-AAT-T---TA-C-GT-CAGA-----ACACAGA--TGCA---TG--CTGG--GA-ATTCAT-G-----GA---AC----CTTCCATAAACC-------------GT-TTAA-TTG-----ATGACATTTCC-TA---GGAGA---A----ACGAACAAACAAGTTCTTAGCCA-----------CA--CT-------------TT----------TAAT---TTTTAGAAGAC---CT-AG-TTT-
gi|9 : AAA--TTT------ATAC-------AGGACC-GGAGA-TAA-GTA-ATC-TTTCA--ATA-AGACATAA-TGT-------TAATTGATACATGCGA---------TCACC-A---AAC---AT--CAGT--TATAA--TGGTCAATTTTGACGAA------------T------ATAA-----TAA-T-CA----------A-TGTA-T-G-AAGGT-TGT-----AT-ATAATCA-A-CCTTAGAGTCC-TCT--AT--T--------------C-A--G-----TTCTT-TATTTCttcatcctaaagtgtttttttttcatgaacacttaatttagtttttgt
gi|9 : aaCC-C---AGTGCTCATTGGC--AA-TGTTTTGAGGC-C-A-T-TATTTAAC-GTACAGACTTTGACACAGAATTACAGATTGACTTGGTAGACATTAAT-GTTAACGAGCTAC----CT--CATAATCTTCTAATTTAGAGTGTATTAA-TTGAATGCATAAAATCTCTGTAATCAGAGACTTA----ACAA------------------A-----------tgattagggcagccctatcttgtgttatccattaatccaaatagttctttccccaagataattttatacattggggcatgagtagtattcttgaaatatgtcatcatggtgtgaacaaatttcaagaggcggattctcttttcgtgtcatctaggactttcgattgtatgttcacatgttttttagcggccttcgataatcattcccagtgctcattggcaatgttttgaggccattatttaacgtacagactttgacacagaattacagattgacttggtagacattaatgttaacgagctacctcataatcttctaatttagagtgtattaattgaatgcataaaatctctgtaatcagagacttaacaaa
blockSeqs : TT G CTTAT A TCGTG T TG GCG A A T . AT A T G TT T TT T GCATTGTTATTTACCACGGAGACTACCTTTCA T C TCTAG TA GC C TG C T . G . GA A T G TAGT T T C . G . C T . C GC GGCAG C ATG G A T . A T A G A TC T . A G T . G . TG G A G . C . GG C . . CC GG TT GTT C TCAG T C A . C TT TTTGAAC . A A G . C C AACA TAGCTT . G T A T AATTCG G AAG T . C . AA AT A CATACAGT CT . A TAA ATT . ACTTAGCAGTGG T . TTACA ACA A CGC TG C GAG GTACATT T A A TGCAC C CG T AT T GGAAAATTCAGATGTAGTCAGT TA T ATT C C GA T GGA . T AACA AT CGGAGGA A TTCTAAT T C T T T . GT GC T C TATTGTATAATTGCAG ATCA CATTATTC C C . AATTTTGACGAATATAATAATCA . C A T GG A ACATA GA TTAGA G TTATATCTATATGAT . CG . . G TA TATATG C AT G . TT TT . TA G T TATACAGTGCTTGTGT C G C CT AA T GC GC TG TGAA TA T TTTGA T A TTATT CT A CTTTG AT GAT AC T TA C T . TTAAC GC ATGA A . AATGC G ATC CTT . ACAAACAAGTTCTTAGCCACACTTT A . A . T A
blockSeqs : . . T . TAATT . T . . . . . . . A . . T . . ATTATACAGCATCAA . C AAT . . . . . G . . . C . . . CAT . . . . C . . C . . A AA . T . G . . . . C . . . . . T . . . T . GA . . G . C . G . . . . G TT . . T T . . . . . GTGAC . . A G . . C TA TTAT . A T . . AATT G CA . . . . A GT A TAT . . . CA TT . CATAAG . . ACGT CG . CTT TT . G AACAA . . . A . T . . T AGAGTGAGCTAGAGTAGTTC . T T . T GA . A . . ACA . T . . . G . . . . . A . . TAATTGATACATGCGA TC CATTAT C A . CAATTTGAACAGAATATATCA . . . . . . TA A A . TTAATTATATTG . . . . . TT . . . G . TA . . . . T TATGTGTTAATTA . . . . . . . TT TG TG . . . . . TCT AC . . . . . G . . T . . . . . . . . . . . ACAAGCTTTTAGCCTCACTATT . . A . . .
blockSeqs : . . T . TAG . G . . . . . . . C . . T . . ATTCTAC . . A . . . . . G . . . A . . . . . . . . C . . C . . A A . T . A . . . . A . . . . . A . . . G . AA . . . . T . T . . . . G AT . . T T . . . . . TTGAC . . A G . . C GA TTA . G T . . AA . AA . . . . A GT A AAT . . . TA AT . CATAG . . ACA CA . AT TG . A . . . . A . G . . T GGGGAATAATTCAGAT . T T . T CA . A . . ACA . . . . . . . . . . . . . . TAATGAATATTGTAG C TATTAT C . . CAATTGGTTCACTGCAACAAC . . . . . . . A A . TATAATATCTT . . . . . A . . . G . T . . . . . TATAGCTGCTT . . . . . . . T TA TT . . . . . TTT C . . . . . G . . T . . . . . . . . . . . AGTTTTTAGCCTCACTATT . . C . . .
blockSeqs : . . T . T . T . . . . . . . T . . . . . ATT . . A . . . . . . . . . A . . . . . . . . C . . . . . G A . T . A . . . . C . . . . . C . . . G . A . . . . C . G . . . . G T . . T T . . . . . TGAC . . A . . . C A TTG . G T . . . . AA . . . . A GG A TAT . . . TA TT . CATAG . . A CA . CT TG . G . . . . G . C . . C GGGGAAA . T T . C AA . C . . AAC . . . . . . . . . . . . . . TATTGTATATTGCA A ATTTAT C . . CAATTGTTCATCAATAATCA . . . . . . . A A . TATTATCTT . . . . . T . . . A . T . . . . . TATGTGTTA . . . . . . . T TG A . . . . . ATT C . . . . . G . . T . . . . . . . . . . . GTGCAACACATT . . C . . .
blockSeqs : . . A . . . T . . . . . . . T . . . . . . . . A . . . . . . . . G . . . . . . A . . . . . . . . C . . . . . C . . . T . G . . . . . . G . . . . . . . . . . . . . . . . . . . . . A . GT . . . . . AT . . . . A T A TT . . . A AT . CAAT . . A CA . CT CA . G . . . . A . T . . T CGGAAAA . T T . T AA . A . . GCA . . . . . . . . . . . . . . TATCGTAAATTGAT A ATTC C . . CATTGAAAAATTATAATACC . . . . . . . A A . TGTTATATG . . . . . T . . . . . A . . . . . TGTTTTG . . . . . . . T G C . . . . . TT C . . . . . G . . T . . . . . . . . . . . A . . . . . .
blockSeqs : . . . . . . . . C . . . . . C . . . T . G . . . . . . . . . . . . . . . . TT . . . . . . . . . A A . AA TG . G . . . . T . T . C AGTAGT . . . . T G . C . . C . . . . . . . . . . . . . . AAATTGCA A CAT C . . CATGTATATCTATAATCA . . . . . . . A . . CTATT . . . . . T . . . . . T . . . . . . . . . . . . . . . . TC C . . . . . G . . T . . . . . . . . . . . . . . . .
blockSeqs : . . . . A . . . . . T . . . . . A C . T G . . . . . . A . T . . . . . . . . . . . . . . . TATTGTA A CAT . . . CAATAATCA . . . . . . . A . . TA . . . . . . . . . TT . . . . . . . . . T . . . . . . . . .
blockSeqs : . . . . A . . . . . . . . . . . . . . . . . . . . . . TGCA A CAT . . . CATGTA . . . . . . . . . . . . . .
blockSeqCons : T***** TG*** T* ATTTACCC*************************** ** A****** ** A* *** ** G** TT* T*** TTGAC*** **** A*** TTN*** AA***** AA***** ** ********* A** TAT****** ** NT** CATAG******** A******* CA** TG***** ** GGGGAATAGTTCAT********************************* T** GA ACA* TATTGTAATTGCA******************* CATTAT** C* ** ***** A** TATTATTT************** *** T** TATGTGTTG********** TG T**** ** **** ***
originalCons : NNCATTACCTCCCT--GCT-AGGT----T-AT-CTCTTAGT-AGCAT-CTACCAGAGGT-C---A-GCA-CTG-ATGCTG-ACG--T-CGGTCGG-CCA--CGTTGC--ATTTT-GGCACG--------TT-TAC----------A-C---TCA-CT-CTTAGTA-CACAC----A--GTGAA--AATG--TCA-A--CATCAGAA-AGTGAACT--A-AATAATGAG-AC-AG-A-AC-TG----AA-GTATTT-GG-ATA---TNAGTTTGAA-CCA-GAGCTT-TAC-AGAGG-AAG-A----AA-TTG-T-TTCCC-AGAATTA-ATGCTT-CCT-CACCA-GAAACTGACT-TTAA-TG--AGA-GA--GGANTT-TCTCT-GGA-TTGTTGTGCTT-GTGAAAAAT-TGTTCAA-T-TT-TACCTACATT-CAAGGA-G-TG-TC-TCTGTTGTC-ATGAGT--TT-GACCATT-ATG---TTTTGG-ATT---ATATAAAC-ATGCACACAAAGTGCATT-TCTCTA-CAT-CCTG--ACT-TT---ACACA----GTGTGTGT-CTAAGTCCTGT-TAT-CCTTGA---ACAGCTTG--TACATTA-TCTATCTCGGGTACAAAA-GC-CACAGAGGAATTC-GGAAGAGCCCCAGAGCACTTACAT--A--A-CAAGTA-AGA--AAAAC---------AC-AAAC-A-AAAGTGGAAAATAT----T-ATCTGC--TGT--A-TTTA-TCAAAA-T-CT-AAA------CA-TA-GCAT-GCCATTTG-TGTGT----A---AACATTTCCA-CA-TT-CACC-T-ATG-----TAATA-G--GACACATT-------TCTGTT-GC-A-GACA---A-TCAAG-ATTTATGGCT-TACA-CAGACAAATTCATTAAT--TGGGTCAGACGTGGTCAGCCTCTG-G-----------GA----------G--T-------AGT--AG-T--TA--CCCTCA--TGTGTTGTG-ACGGAAATAAGGAAAA-CATTTT--AT-GATGAA-GATG-ACAAA--TT-------AT-C-------AGACTC-GGA-A-TAA-GTA-ATC-TTTCA--AT--AGACA-AA-TGT-------T-ATTG-T-------A---------TCACC-A---AACATTAT--CAGTC-TAT-A--TGGTC--------C--A------------T------AT-------TAA-T-CA----------A-TGTA-T-A-AA--T-TGT-----ATGATAATAA-A-GC----AGTAC-T-T--AT--TAT-CT------T-AC-A--GCAATCTTGTT-TATTTCC---AA-ATA-T-TTAA------TA-CA--TGTA-TA-T-TCTAA--TTGA-T--T-GAATC-TTGAAATAT---GTG-TT-G-T-T-ACAT-TCA-GA-CATCT--TT--ATCG-TG--CACTAGC-CGTGTAACAGTGACCC-T---AGTCTCCAGCAGC--AA-TGT-----GGC-C-A-T-T---TA-C-GT-CAGA-----ACACAGA--TGCA---TG--CTGG--GA-ATTAAT-G-----GA--TAC----CCTCCATAAACCTTTCATTTAGAGTGT-TTAA-TTG-----ATGAAATCTCC-TA---AGAGA---A----ACAA------------------A-----------CA--CT-------------TT----------T-AT---TTTCAGAAGGCATTCTAAG-TTT-GCTGTGC-AAAAATAGTT
finalCons : NNCATTACCTCCCT--GCT-AGGTT-----AT-CTCTTG---AGCAT-CTACCAGAGGT-C---A-GCA-CTG-ATGCTG-ACG--T-CGGTCGG-CCA--CGTTGC--ATTTT-GGCACATTTACCC---------------------------CT-CTTAGTA--ACACA------GTGAA--AATG--TCA-A--CATCAGAA-AGTGAACT--A-AATAATGAG-ACA-G-A-AC-TG----AA-GTATTT-GG-ATA---TNAGTTTGAA-CCA-GAGCTT-TAC-AGAGG-AAG-A----AA-TTG-T-TTCCC-AGAATTA-ATGCTT-CCT-CACCA-GAAACTGACT-TTAA-TG--AGA-GA--GGANTT-TCTCT-GGA-TTGTTGTGCTT-GTGAAAAAT-TGTTCAA-T-TT-TACCTACATT-CAAGGAG--TG-TC-TCTGTTGTC-ATGAGT--TT-GACCATT-ATG---TTTTGG-ATT---ATATAAAC-ATGCACACAAAGTGCATT-TCTCTA-CAT-CCTG--ACTTTGAC---ACA----GTGTGTGT-CTAAGTCCTGT-TAT-CCTTGAA---CAGCTTN---ACATTA-TCTATCTCGGGTACAAAA-GC-CACAGAGGAA-----GAAGAGCCCCAGAGCACTTACATAA-----CAAGTA-AGA--AAAAC---------AC-AAACA--AAAGTGGAAAATAT------ATCTGC--TGT--A-TTTA-TCAAANT--CT-AAACATAG--------CAT-GCCATTTG-TGTGTA-------AACATTTCCACA--TT-CACC-T-ATG-----TAATA-G--GACACATT-------TCTGTT-GC-A-GACA---A-TCAAG-ATTTATGGCT-TACA-CAGACAAATTCATTAAT--TGGGTCAGACGTGGTCAGCCTCTGGGGGAATAGTTCAT---------------------------------TA--CCCTCAT--GTGTTGTG-ACGGAAATAAGGAAAA-CATTTT--AT-GATGAA-GATGACA-AA--TT-------AT-C-------AGACTC-GGA-A-TAA-GTA-ATC-TTTCA--AT--AGACA-AA-TGTTATTGTAATTGCA-------------------TCACC-A---AACATTAT--CAGTC-TAT-A--TGGTC--------C--A------------T------AT-------TAA-T-CA----------A-TGTA-T-A-AA--T-TGT-----ATGATAATAAA--GC----AGTAC-TTATTATTT--------------AC-A--GCAATCTTGTT-TATTTCC---AA-ATA-T-TTAA------TA-CA--TGTA-TAT--TCTAA--TTGA-T--T-GAATC-TTGAAATATGTGTTG----------ACAT-TCA-GA-CATCT--TT--ATCG-TG--CACTAGC-CGTGTAACAGTGACCCT----AGTCTCCAGCAGC--AA-TGT-----GGC-C-A-T-T---TA-C-GT-CAGA-----ACACAGA--TGCA---TG--CTGG--GA-ATTAAT-G-----GA--TAC----CCTCCATAAACCTTTCATTTAGAGTGT-TTAA-TTG-----ATGAAATCTCC-TA---AGAGA---A----ACAA------------------A-----------CA--CT-------------TT----------T-AT---TTTCAGAAGGCATTCTAAG-TTT-GCTGTGC-AAAAATAGTT
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|13 ): TTTAAAGTAGGTGTTCATGAAAATATGACAAAGGGTTTAAAATTGTCATTTTGATGTATATAATGAATTCTGAAAATAATAAAGATGTAGCTTTCTTCAGTAAGGAGATATCTTATAAAGATTAACAAATCTTTACAATCCATCGAACT
Unaligned ( gi|17 ): AGGAAGTGTTCATGAAAATATGACAAATGGTTTAAAGTATATAATGCTCTTTGAATATCATAGAGATATAGCTTCCTTCGGTAAGGACATATTTCATACGACAAACAAATCTTTACAATCC
Alignments
lowQualScore : 1111111111111111111111 111111111111111111111111111111111111111111111111111111111111 1111111111111111111111111111111111111111111111111111111111111
lowQualScore : 222222222222 111111 111 22222222 0000000000000000000000 222222 444444 11 11 11 2222 111 1 11 111111 1 111 11 1 111 1111 3333 2222222 33333333333 1111111 333333333 11111 3333333333333 22222222 11111 2222222 11111 11 77777777777777777777777777777777777777 111 1111111 1111111 111111 2222 11111111 000000000000000000000000000000000000000000000000000000000000 22222 444444444444444444444444444444444 111 1 111111 1 222222222222222222222 111 22222 11111 11111 11 11111 11111 111 1111 1111111111111111111111111111111111111111111111111111111111111 111 1
lowQualScore : 99 6 333333333333 999999 6 99 111 6 6 6 6 99 6 0 4 6 99 0 7 99 6 44444444 8888888888888888888888 333333 8 222222 11 11 8 11 8 5 99 6 6 99 6 6 6 5555 6 5 5 000 6 6 6 2 6 6 00 444444 3 222 6 1 8 4 4 4 1 5 5 66 5 66 1 5 5 5 1 5 33 5 5 0 5 1 6 777 6 6 6 99 77 999 444 6 4444 3 5 5 5 5 77 77 77 77 5 5 3 2 6 777 2222 6666666 6 1 7 6 6 00000000000 5555555 6 99 333333333 5 999 44 33 44444 0 77 77 5 777 5 3 5 0000000000000 5 1 5 77777777 5555 5 8888 5 22222 5 777 5555555 4 4 4 33333 4 66 4 0 00 0 55 1 77 33333333333333333333333333333333333333 0 222 5 1 5 0 5 999 5 5 6666 66 8888888 4 4444444 0 4 0 8 4 4 4 4 333333 4 2 4 6 555 3333 999 777 4 00000000 55 8 66 666666666666666666666666666666666666666666666666666666666666 4 4 4 4 66 4 11111 4 888888888888888888888888888888888 5 0 5 000 1 5 666666 5 77 77 5 1 77 5 77 5 5 5 3 333333333333333333333 5 5 99 99 6 99 444 0 0 6 77777 11 66 5 22222 0 5 5 5 5 888 5 666 5 22222 66 888 11 5 66 5 1 4 11111 66 9999 5 5 22222 5 000 888 0000 4444444444444444444444444444444444444444444444444444444444444 5 000 1 5 5 6
lowQualScore : .. . ............ ...... . .. ... . . . . .. . . . . .. . . .. . ........ ...................... ...... . ...... .. .. . .. . . .. . . .. . . . .... . . . ... . . . . . . .. ...... . ... . . . . . . . . . .. . .. . . . . . . .. . . . . . . ... . . . .. .. ... ... . .... . . . . . .. .. .. .. . . . . . ... .... ....... . . . . . ........... ....... . .. ......... . ... .. .. ..... . .. .. . ... . . . ............. . . . ........ .... . .... . ..... . ... ....... . . . ..... . .. . . .. . .. . .. ...................................... . ... . . . . . ... . . .... .. ....... . ....... . . . . . . . . ...... . . . . ... .... ... ... . ........ .. . .. ............................................................ . . . . .. . ..... . ................................. . . . ... . . ...... . .. .. . . .. . .. . . . . ..................... . . .. .. . .. ... . . . ..... .. .. . ..... . . . . . ... . ... . ..... .. ... .. . .. . . . ..... .. .... . . ..... . ... ... .... ............................................................. . ... . . . .
lowQualScore : 22 7 333333333333 222222 7 88 777 7 7 7 7 22 7 7 8 7 22 7 3 22 7 22222222 4444444444444444444444 000000 0 000000 00 00 0 00 0 0 22 7 7 88 7 7 7 8888 7 7 7 000 6 7 7 0 7 7 33 333333 3 555 7 7 9 4 4 4 7 0 0 99 0 99 0 0 7 7 3 7 77 7 7 0 0 0 7 555 7 7 7 22 77 222 000 7 8888 2 7 7 7 7 99 11 99 44 7 7 2 5 7 555 3333 3333333 7 0 3 7 7 88888888888 3333333 7 22 333333333 7 444 66 99 33333 7 99 99 7 333 7 0 7 9999999999999 0 4 0 99999999 2222 0 6666 1 55555 0 111 6666666 4 4 4 22222 4 99 4 1 88 1 88 4 99 00000000000000000000000000000000000000 7 777 7 4 3 1 7 444 7 7 7777 11 9999999 4 4444444 1 4 1 9 4 4 4 4 999999 4 0 4 4 444 0000 999 888 4 77777777 66 9 11 888888888888888888888888888888888888888888888888888888888888 4 4 4 4 11 4 77777 4 111111111111111111111111111111111 0 2 0 000 4 7 444444 7 99 44 7 4 99 7 99 7 7 7 6 444444444444444444444 7 7 22 22 7 22 000 1 7 6 00000 55 99 0 55555 2 0 0 0 0 888 0 222 0 55555 11 888 99 6 99 0 9 4 11111 11 4444 0 0 55555 7 000 888 6666 0000000000000000000000000000000000000000000000000000000000000 7 000 9 7 7 7
consensus : NNCATTACCTCCCT--GCT-AGGT----T-AT----CTCTTGA---GCAT-CTACCAGAGGT-C---A-GCA-CTG-ATGCTG-ACG--T-CGGTCGG-CCA--CGTTGC--ATTTT-GGCAC--------ATT-TAC---------------C--CTCTTA------GTA-ACACACT----GTGAA--AATG--TCA-A--CATCAGAA-AGTGAACT--A-AATAATGAG-AC-AG-A-AC-TG----AA-GTATTT-GG-ATA---TNAGTTTGAA-CCA-GAGCTT-TAC-AGAGG-AAG-A----AA-TTG-T-TTCCC-AGAATTA-ATGCTT-CCT-CACCA-GAAACTGACT-TTAA-TG--AGA-GA--GGANTT-TCTCT-GGA-TTGTTGTGCTT-GTGAAAAAT-TGTTCAA-T-TT-TACCTACATT-CAAGGA-G-TG-TC-TCTGTTGTC-ATGAGT--TT-GACCATT-ATG---TTTTGG-ATT---ATATAAAC-ATGCACACAAAGTGCATT-TCTCTA-CAT-CCTG--AC-TTT--GACA-CA-GTGTGTGT-CTAAGTCCTGT-TAT-CCTTGA---ACAGCT---T--ACATTA-TCTATCTCGGGTACAAAA-GC-CACAGAGGA----A----G-AAGAGCCCCAGAGCACTTACAT--A--A-CAAGTA-AGA--AAAAC---------AC-AAAC-A-AAAGTGGAAAATATA-----TCTGC--TGT--A-TTTA-TCAA-ANT-CTAAA------CA-TA-GCAT-GCCATTTGT-GTGT----A---AACATTTCCA-CA-TT-CACC-T-ATGT-----AATA-G--GACACATT-------TCTGTT-GC-A-GACA---A-TCAAG-ATTTATGGCT-TACA-CAGACAAATTCATTAAT--TGGGTCAGACGTGGTCAGCCTCT--GGG------G---------GAGT--------AGTT---ATTACCCTCA--TGTGTTGTG-ACGGAAATAAGGAAAA-CATTTT--AT-GATGAA-GATGA-CAAA--TT-------AT-C-------AGACTC-GGA-AT-AA-GTA-ATC-TTTCA--AT--AGACA-AATGTT-ATTG-T-AT-A-TTGC-A-TCAC---C-AAACATTAT--CAGTC-TAT-A--TGGTC--------C------------A--T------AT-------TA--A-T-CA----------A-TG-TA-TA-AA--T-TGT-----ATGATAATAA-A-GC----AGTAC-TT--AT---TAT-T--T---AC-AGCAATCTTGTT-TATTTCC---AA-ATAT-TTAA------TA-CA--T-GTA-TA-TTCTAATT--GA-T--T-GAATC-TT-GAAATAT---G--T-G-TTG---A----CAT-TCA-GACATCT--TTA--TCG-TG--CACTAGC-C-GTGTAACAGTGACCC-T---AGTCTCCAGCAGC--AA-TGT-----GGC-C-A-T-T---T-A-C-GT-CAGA-----ACACAGA--TGCA---TG--CTGG--GA-ATTAAT-G-----GA--TAC----CCTCCATAAACCTTTCATTTAGAGTGT-TTAA-TTG-----ATGAAATCTCC-TA---AGAGA---A----ACAA------------------A-----------CA--CT-------------TT----------T-AT---TTTCAGAAGGCATTCTAAG-TTT-GCTGTGC-AAAAATAGTT
Reference ( family-366 ) : NNCATTACCTCCCT--GCT-AGGT----T-AT----CTCTTGA---GCAT-CTACCAGAGGT-C---A-GCA-CTG-ATGCTG-ACG--T-CGGTCGG-CCA--CGTTGC--ATTTT-GGCAC--------ATT-TAC----C----------C--CTCTTA------GTA-ACACA------GTGAA--AATG--TCA-A--CATCAGAA-AGTGAACT--A-AATAATGAG-AC-AG-A-AC-TG----AA-GTATTT-GG-ATA---TNAGTTTGAA-CCA-GAGCTT-TAC-AGAGG-AAG-A----AA-TTG-T-TTCCC-AGAATTA-ATGCTT-CCT-CACCA-GAAACTGACT-TTAA-TG--AGA-GA--GGANTT-TCTCT-GGA-TTGTTGTGCTT-GTGAAAAAT-TGTTCAA-T-TT-TACCTACATT-CAAGGA-G-TG-TC-TCTGTTGTC-ATGAGT--TT-GACCATT-ATG---TTTTGG-ATT---ATATAAAC-ATGCACACAAAGTGCATT-TCTCTA-CAT-CCTG--AC-TTT--GACA-CA-GTGTGTGT-CTAAGTCCTGT-TAT-CCTTGA---ACAGCT---TN-ACATTA-TCTATCTCGGGTACAAAA-GC-CACAGAGGA----A----G-AAGAGCCCCAGAGCACTTACAT--A--A-CAAGTA-AGA--AAAAC---------AC-AAAC-A-AAAGTGGAAAATATA-----TCTGC--TGT--A-TTTA-TCAA-ANT-CTAAA------CA-TA-GCAT-GCCATTTGT-GTGT----A---AACATTTCCA-CA-TT-CACC-T-ATGT-----AATA-G--GACACATT-------TCTGTT-GC-A-GACA---A-TCAAG-ATTTATGGCT-TACA-CAGACAAATTCATTAAT--TGGGTCAGACGTGGTCAGCCTCT--GGG------G---------GAAT--------AGTTC--ATTACCCTCA--TGTGTTGTG-ACGGAAATAAGGAAAA-CATTTT--AT-GATGAA-GATGA-CAAA--TT-------AT-C-------AGACTC-GGA-AT-AA-GTA-ATC-TTTCA--AT--AGACA-AATGTT-ATTG-T-A--A-TTGC-A-TCAC---C-AAACATTAT--CAGTC-TAT-A--TGGTC--------C------------A--T------AT-------TA--A-T-CA----------A-TG-TA-TA-AA--T-TGT-----ATGATAATAA-A-GC----AGTAC-TT--AT---TAT-T--T---AC-AGCAATCTTGTT-TATTTCC---AA-ATAT-TTAA------TA-CA--T-GTA-TA-TTCTAATT--GA-T--T-GAATC-TT-GAAATAT---G--T-G-TTG---A----CAT-TCA-GACATCT--TTA--TCG-TG--CACTAGC-C-GTGTAACAGTGACCC-T---AGTCTCCAGCAGC--AA-TGT-----GGC-C-A-T-T---T-A-C-GT-CAGA-----ACACAGA--TGCA---TG--CTGG--GA-ATTAAT-G-----GA--TAC----CCTCCATAAACCTTTCATTTAGAGTGT-TTAA-TTG-----ATGAAATCTCC-TA---AGAGA---A----ACAA------------------A-----------CA--CT-------------TT----------T-AT---TTTCAGAAGGCATTCTAAG-TTT-GCTGTGC-AAAAATAGTT
gi|1 : ATTACC--CCT--TCT-AGGT----TTATT---CTCTTGG-----AT-CTCCCAGAGG--C---A-GCA-CTG-ATGCTGGACG--T-CA-TTGG-CCA--CATTGC---TTTT-G-CAC--------ATT----------------------CTCTTA------GTA-ACACAC-----GTGAA--AACG--TCA-A--CATCAGAA-AGTGAACCTAA-AATACTGAGGAC--G-A-AC-TG----AA-GTATTT-GG-ATACTATAAATTTGAATCCA-GAGTTTATAC--GAGG-AAG-A----AAATTG-T-TTTCC-AGAATTATATATTTTCCT-CACCA-GAAACTGACT-TTAA-TG--AGA--ATTGAAATT-TCTAT-GGAATTATTGAGCTTTGTTAAAA-T-TGTTCAA-T-TTATACC-ACATTTCAAGAAAG-TG-TTATCTGTTGTCCATGAGT--TT-AACCATTGATG---TTTTGG-AT----AGATAGAC-ATACACACAAAG-GTATT-TCTGTAGCAT-CCTG--ACGTTT--GACAACGTGTGTGTGT-CTA-GTCCTGTGCAG-C--TGA----CAGC-------ACATTAATCTATCTCCGG-ACAAAA-GC-CACAGAGGATTCGG----G-AAGAGCCCCAGAGCACTCACATTCAGTA-GAGGCA-TGACGAAAACGAAATGAGAACTAGAC-ATAAAGAAGAAATTG-A-----TCTGC--TGCTGA-TTTA-TCAA-AATTCTAAAA-----CA-T---TAT-GC-ACTTGTTGTGTTTCAA---AACATGTCCA-CAGTT-CACC-T-A-GTCAATTAATG-G--AACACATT-------TCTGTT-GC-A-GACA---A-TCAAG-AATTATGGCT-TACA-CAGACCAATTCA-TAATG-TGCGT-AGATGTGGTCA-CCTCT--GGG------GAAAATTCAAGAGT--------AGTGA--ATTACTC-------TGTTGTG-ATG--AATAATGAAAA-CATTTT--TTAGATGAA-GATGA--AAA--TT-------AT-C-------AGACTC-GGA-AT-AA--TA-ATCTTTTCA--AT--AGACA-AATGTT-A-TG-T-AT-A-TTGC-A-TCAC---C-AAACATCA----GGTCTTAT-GATTGGTT--------C------------A--TGAAA--ATTAA----TA--A-T-CA----------ATTG-TA-TA-AA--T-TGTA----ATGATAATAA-ACGC----AGTAC-TT--TA---TAC-T--T---ACTAGCAATCTTGTTCTATTTTCACAAA-GTAT-TTAA------TA-CA--T-GTATTATTTCTAATT--GATT--T-GAATC-TT-GAAA-AT---G--TGG-TTA---A----CAT-TCA-GACATCT--TTA--T-G-TT--CGC--GC-C-G------AGT------------TCTCCAGCAGC--AA-TGT-----GGC-C-A-A-T---T-A-C-GT-CAGA-----ACACAGA--TGCA---TGA-CT-G--GA-AT--ATGG-----GA--TAC----CTCCCATAAACCTTTC-TTTAGAGTGT-TTAATTTG-----ATGAAATCT-C-TA---AGTGA---ACACTACAA------------------A-----------CA--GT-------------TTAGGCCATCACT-ATTTATTTCAGAAGGCATTCTAAGTTTT-GCTGTGC-AAAA
gi|10 : gtattaagaagtgttcatgaaaatctatgacaagggtttaaaattgtcattttgaatgtaatatgattttgaaaaccatacgatgtgctttccccgtcaaggagatttttcataaagatctaactaattgtacaatccatggagctgccatattgataaattaATTACCTCCCT--GCT-AGGT----T-AT----CTCT--A---GCAT-CTACCAGAGGT-C---A-GCA-CTGTATGCTG-ACG--T-CAGTTGGGCCA--CAT-GC--ATTTTTGGCAC--------ATT----------------------CTCTTA------GTA-ACACAAT----GTGAA--AATG--TCA-A--CATCAGAA-A-TGAACT--A-AATAATGAG-AC-CGAA-AC-TG----AA-GTATTT-GG-ATA---TGAATTTGAA-CCA-GAGTTT-TAC-AGAGA-AGGAA----AA-TAG-T-TTCC---AAATTA-GTGTTT-CCT-CACCA-GAAACTGgaataagttatttctatgaacacttcc
gi|11 : taaaggaagtgttctgaaaatatgaacaaaggtttttaaaattgttcatttgatgtatataatgaattttgaaaatcatacaagatgtagctttcttcagtaaggagatatttcataaagattaactaatttttacaatccatggaagctgccatatgaataaaatC-AT-CACACAAAGTGTATT-TCTCTA-CAT-CCTG--AC-TTT--GAC-------------------------------CTTGA----CAGCT---TA-A--TTA--CTATCTCG--TACAAAAAGCTCACAGAGGA----ATTCGG-AAGAGCCCCAGAGCACTTACAT--C--A-GAAGTATAAA--AAAACC--------AC-AAAT----------------TA-----TCTGCCTTGT--A-TT-A-TCAACATT-CTAAA------CA-TAAGCAT-TCCATTTGT-GTTT----ACA-AACATTTTCAACA-TT-CACA-T-A-GT-----AATT-G--GATACATT-------TCTGTTTGC-AAGACC---A-TCA-G-ATTTATGGCT-TACA-CA-ACAAA-TCAT
gi|12 : -ATGCTT-CCT-GACCA-GCAACTGACT-TTAA-TG--AGA-GA--GTAATT-TCTAT-GGA-TTGGTATGGTT-GT-AAATAT-TGTTCAA-T-TT-TACCTACATT-CAAGGA-G-TG-TC-TCTGTTGTC-ATGAGT--TT----------------------------ATATAAAC-ATGCACACAAAGTGTATT-TCTCTA-CAT-CCTG--AC-TGT--GACA-CA-GTGTGTGT-CTAAGTCCTGT-TAT-CCTTGAAACACAGCTAGCTT-ACATTA-TCTATCTCAGGTACGAAA-GC-CAGAGAGGC----A----G-AAaac
gi|14 : gT--A--A-CAAGTA-AGT--AAAAC---------AC-AAAC-A-AAAATGAAAAATAT----------C--TGT--G-TTCA-T----------AAA--------------AT-GCCAATTGT-GTGT----A---AACATTTCCA-CG-CA-TACC-T-ATGT-----GATA-G--AACACAAT-------TCTGTT-TG-A-TACA---A-TCAAG-AGTTATGGCG-T--A-CAGAT-AATTCATcactt
gi|15 : ATTACCTCCCT--GCT-GGGT----T-AT----CTCCT-A---GCAT-CTAGAAGACAG-C---A-GCA-CTA-ATGTTG-ACG--T-CAGTAAG-AAA--CG-TAT--ATTTT-GGCAC--------
gi|16 : tctttcaatccttgggagctgccatattgataaattgTAAT-G-----GA--TAC----CCTCCATAAACCTTTCAATTAG--TGT-TTAA-TTG-----ATGAAATCTCT-TA---AGAGA---A----ACAT------------------AGTTTTTAGCCTCA--CTA------------TT----------T-AT---TTTCAGAAGGCATTCTAAG-TTT-GCTGTGC-AAAAATATTTggtgaacagtatcaacgcttatta
gi|18 : A--TT-------AT-C-------AGACTC-G-A-AT-AA-G---A-C-TTTCA----------------TT-A------A--A-CTGC-A-TCACCATC-AAAC---AT--CAGTC-TATCA--TGGTC--------CAATTTGAACAGAA--T------AT-----------A-T-CA----------A-TG-TA-TA-AA--TATGT-----ATGATAATAA-A-ttttcatgaacacttc
gi|19 : AAA--TGCT---TA--TTTG--AA-AT-AAT-G-----GA--TTG----CCTCCATAAAACTTTCACTTGGAGTCT-TTGA-TTG-----ATCATATCTTG-TA---ATAGA---A----ACAA------------------G-----------CA--c
gi|2 : tTTACCTCCCT--GCCGAGGTCTTAT-ATACTCCTCGTGA---ATCT-CTACCAGAGGT-CGCGA-GCA------TGTTC-AGGATT-GGGTCAA-CCATTCGTTGCTTAGTTT-GGTACGCATTGTTATT-TAC----CACGGAGACTAC--CTTTCACTTCTTGCC-ACCCACTCTAGGTGGATAAATG--TCACA--CATCACAG-ATTGAACT--A-AATAATGAA-ACGAG-A-AC-TGCAT-AG-GTATTT-GA-ATA---T-AGTTTGA--CCACGAG-TT-TAC-AGAGGCAAG-GGCAGAA-TTGATGTTCCC-AGGATTC-ATGCTT-CTTACGCAA-GAAA-TGACT-TTAAATG--AGATGA--GGATCT-TTTCT-GGA-TTGTTGTGCTT-GTTGGAAATGTTTTCAA-T-TT-TACCTA-ATT-CAAGGA-T-TA-TT-TCTGTTGTC-ATGAGTCCTTGGACCA-T-ATGGTTTTTTGG-ATT---ATATAAAC-ATG-ACACAAAGTGCATTATCCCTA-CATCCCTGTTAC--TT--GACA-CA-GTGTGTGTACTAAGTCCT-T-TATCCCTTGG---ACTACG---T--ACATTA-TCTATCTCGAA-ACAAAA-GC-CAC-GAGGA----A----G-GGGAGTCCCAGA-CACTTACAT--A--AGCAAGTA-AGA--AACAC---------AC-AACCAA-AAAGTGGAAAAAATA-----TCTGC--TGT--A-TT---TCAA-ATT-CTAAAACTTAGCAGTG-GCAT-GCTATTT-T-GTGT----ACGTAACATTTCCA-CA-TT-CACCGC-ATTC-----AATG-GGAGACACATT-------TCTGTT-GCAA-GACA---G-TCAAACGTTTATGGCCGCACATCAGACAAATTC-------------TAGATGTGGTCAGCCTCT--GGG------G---------GAAT--------AATTCAGATTACCCTCAATTGTGTTGTG-ACTGAAATAAGGAAAA--ATTTTGGAT-AATGAA-GATGA-CAAA--TT-------AC-C-------CAACTCTGGACAT-AA-GTA-ATC-TTTCA--AT--AGACA-AATGTT-AATG-A-AT-A-TTGT-AGTCAC---T-CAACATTATTCCAGTC-TAT-A--TGGTC--------C------------A---------AT-------TG--GTT-CACTGCAACAACA-TG-TA-TATAG--T-TTTACATAATGATAATAAGA-GC----AGTAC-TTTAAT---TATAT--TG--AC-AGCAATCTTGAT-TTTCTCC---AAGATAA-TTAA------TA-CAATT-GTA-TATTTCTAATG--CA-T--TGGAACCTTT-GAAATAT---AGCT-G-CTT---A----AATCTCAGGACATC---TTA---CGTTG--CCGTAACGC-GTGTAACAG-GACCC-TGAAACTCTCCAGCAGCTAAA-T-T-----GAC-C-A-TCT---T-A-CTGT-CAGA-----A-ACAAG--TGaattggctttag
gi|20 : acaatccatgggagtgaggctcgcatcatctttagataacaattaatGA---A----ACAAGTGCA-------------A-----------CA--CA-------------TT----------T-AT---TTTCATCAGCC-TTCTAAG-TTTTGCTGTGCAAAAAATAGT
gi|21 : -GG-ATA---TCAGTTCAAA-TCT-GAGCTT-TAC-AGAGA-AAA-A----AA-TCG---TTCTC-AT-ACTG-ATGCTT-CTT-CACCA-ACAATTGA-T-TTAA-CG--AAA-GG--GGGATT-Tctttttcatgacacttcctttaacgaaattgtct
gi|22 : -ATGCTC-TCC-CACCA-GCGACTGACT-TTAA-TG--AGA-GA--GGACTT-TCTCG-GGA-TTCGTGTGCTT-GTG-AAAAT-TGTTCAA-TGTC-TACt
gi|23 : -ATGCTT-TCC-CACCA-GCGACTGACT-TTAA-TG---GA-GA--GGACTT-TCTCG-GGA-TTCGTGTGCTT-GTG-AAAAT-TGTTCAA-TGTC-TACtc
gi|24 : A--CT-------------AT----------T-AT---TTTCAGAAGGCATTCTAAG--TT-G-TGTGC-AAAAATATTTtc
gi|25 : cataaacagtttttcaagcctca-TT-AACCTACATT-CAAGGA-G-TG-TT-TTTGTTGTT-ATGAGT--TT-GAATATT-ATtttttcatgaacact
gi|26 : ACT--A-AATAGTGAG-AC-AG-A-AG-TA----CATGTATTT-GG-ATA---CCAG
gi|27 : ATT-------TCTGTT-GC-A-GACA---A-TCAAG-ATTTATGGCC-CACA-CAGACaa
gi|3 : CATTACCTCCCT--GCT-AGGC----T-AT----CTCTTAATTAACAT-CTACCAGAGGT-C---A-GCA-CTG-ATGCTG-ACG--T-CAGTTGG-TCA--CATTGC--ATTTT-GGCAC--------ATTATACAGCAT----------CAACTCTTA------TTA-ACACA------GTGAC--AATG--TCA-A--CATCAGAA-AGTGGACT--A-AATAATGAG-AC-AG-A-AC-TG----AA-GTATTT-GG-ATA---TCAGTATGAA-CCA-GAG-TT-TAC-AGAGG-AAG-A----AA-TTG-T-TTCCC-AGAATTATATGCTT-CCT-CATCA-GAAACTGACT-TTAA-TG--AGA-GA--GGACTT-TCTCT-GGA-TTGTTGTGCTT-GTGAAAAAT-TGTTCAA-T-TT-TACCTATATT-CAAGGA-G-TG-GC-TCTGTTGTC-ATGAGT--TT-GACCATT-ATG---TTTTGG-ATT---ATATAAAC-ATGCACACAAAGTGCATT-TCTCTA----------------------A-CA-GCGTGTGT-TTAAGTCCTGT-TAT-ACTTGAT--ACAGCT---TATACATTA-TCTATCTTGGGTACAAAA-CC-CAGAAAGGA----A----TTAAGAGCTCCATAGCACTTACAT--A--A-CAAGTA-AGA--AAAAC---------AC-AAAC-A-AAAGTGGAAAACATACAGTATCTGC--TGT--A-TTTA-TCAA-AAT-CAAAA------CA-TA-GCAA-GCCATTTGT-GTGT----A---AACATTTCCA-CA-TT-CACC-TTATGT-----AATA-G------CATT-------TCTGCT-GC-G-GACA---T-TCAAG-ATTTATGGCT-TACA-CAGACAAATTCATTAATATTGGGTCAGATGTGGTCAG---------------------------AGT--------AGTT---AT-ACCCTCA--TGTGTTGTG-ATGGAAATAAAGAAAA-CATTTT--AT-GATGAA-GATGA-CAAA--TT-------AT-C-------AGACTC-CGA-AT-AA-GTT-ATC-TTTCA--AT--AGACA-AACGTT-ATTG-T-A-----------TCAC---C-AAACATTAT--CAGTC-TAT-A--TGGTC--------C------------A---------AT--------A--A-T-CA----------G-TG-TA-TA-AA--T-TGT-----ATGATAATAA-A-GA----AGTAC-TT--AT---TATCT--T---AC-AGCAATCTTGTT-TATTTCC---AA-ATAT-TTAA------TA-CA--T-GTA-TA-TTCTAATT--GA-T--T-GAATC-TT-GAAATAT---G--T-G-TTA---ATTAACAT-TCA-GACATCT--TTA--TCG-TG--CACTAAC-T-GTGTAACAGTGACCC-TG--AGTCTCTAGCAGC--AA-TGT-----GAC-C-A-T-T---TTA-C-GT-CAGA-----ACACATA--TGTA---TG--CTGG--GA-ATTAAT-G-----GA--TAC----CCTCCATAAACCTTTCATTTAGAGTGT-TTAA-TTG-----ATGAAATCTCC-TA---TGAGA---A----ACAA------------------A------------------------------------------T-AT---TTTCAGAAGTCCTTCTAAG-TTT-GCTGTGC--AAGATAGTT
gi|4 : atTGA-ATT---TTATAAAC-ATGCACACAAAGTACGTT-TCTC---CAT-CCTG--AT-TTT--GACA-CA-GTATGTGT-CTAAGTCCTGT-TAT-CATAGAG--ACAGCT---TG--CATTA-TCTATATCGGGTATAAAA-GC-CACAGA--------------------------GCACTTACGT--A--T-CAAGTA-AGA--AAAAC---------AC-AAAC-A-AAAGGTGAAAATATA-----TCTGC--TGT--A-TTTA-TCAA-ATT-CTAAA------CA-TA-GCAT-GTCATTTGT-GTGT----A---AACATTTTCA-CA-TT-CACC-T-ATGT-----AATA-G--GACACATT-------TCTGTT-GC-A-GACA---A-TCAAG-ATTTATGGAT-TACA-CAGAAAGAATCATTAAT--TGGGTCAGATGCGGTCAGCCTCT--GGG------G---------GAA---------A--------TACCCTCA--TGTGTTGTG-ATGCAAATAAGGAACA-CCTTTT--AT-GATGAA-GATGA-ACAA--TT-------AT-C-------AGATTC-GAA-AT-AA-GTA-ATC-TTTCA--AT--AGACA-AATGTT-ATTG-T-AT-A-TTGC-A-TCAC---C-AAATATTAT--CAGTC-TAT-A--TGGTC--------C------------AATT------GTTCATCAATA--A-T-CA----------A-TG-TA-TA-AA--T-TGT-----ATGATAATAA-A-GC----AGTACTTT--ATATCTATATGAT---AC-AGTAATCTTGTT-CATTTCC---AA-ATAT-TTAATATATGTA-CG--T-GTA-TA-TTCTAATT--GA-T--T-GAATC-TT-GAAATAT---G--T-G-TTA---A----CAT-TCA-GACATCT--TTA--TCG-TG--CACTAGC-T-GTGTAACAGTGACCCTT---AGTCTCCAGCAGC--AA-TGT-----GGC-CAA-T-T---T-A-C-GT-CTGA-----ACACAGA--TGCA---TG--CTGG--GA-ATTAAT-G-----GA--TAC----CCTCCATAAACCTTTCATTCAGAGTGT-TTAA-TTG-----ATGAAATCTCC-TC---AGAGA---A----ACAA------------------A-----------CAAGCTTTTAGCCTCACTATT----------T-AT---TTTCAGAAGGCCTTCGAAG-TTT-GCTGTGC-AAAAATAGTT
gi|5 : CATTACCTTCCTTTGCT-AGGT----A-TT----TTCTTAG---GCATTCTACACGAGGTGC---AAGCAACTG-ATGCTG-ACG--TATGGTTTG-CCA--TAT--C--ATTT--GGCAC--------ATTCTAC----------------------TA------GTACACACA------GTGAA--AATAGCTCA-ATGCATCAGAACAGTGAACT--AGAATAACGAG-AC-AG-ATACGTGTAGTGA-GTATTTTGGCATA---TGAATTTGAA-CCA-GAGCTT-TACCAGAG--AAG-A----AACTTG-T-TCCCCGAGAATTA-GTG--T-CCT-TACCATGAAACTGACTGTTAA-TGTCAGA-GA--GAATTTGTCTCTTGGA-TTGTTGAGCTT-GTAAAAAAT-TGTTCAAAT-TT-TACCTACATT-CAAGAA-GGTGCTC-TCTGTTGTC-ATGATA--GT-GACCCAT-AAG---TTTTGGCATTCAGA-ATAAGCCATGCACACAAAGTGTATT-TCTCTA-CAT-CCTG--AC-TTTTGAACT-CA-GTGCGAGT-ttttcatgaacactaccttta
gi|6 : attaaaggaagtgttcatgaaaatatgttatacaacttagggcctttaaatatgtcgtcatttttgcatttgtatattaatgaatttttgataatcattacaagtagctttcctccagtaataatatctatgaaagattagtagctaattttacaattccatggaaagctccatattgataataagAT-GCCATTTGT-GTGT----A---AACATTTCAA--A-TAACACA-A-ACAT-----GATA-G--GGTATAGTAACAA--T-TAAT-GC-A-GACATGCACTCAAC-ATTTATGGC---ATA-AAGACAG-TTTATCAAC--TGGGTCAGACGAGGTCAGCATCTTAGAGTGAGCTA---------GAGT--------AGTTC----TACTCTCA------TTGTG-ACAAAAGTTAGAGAGG-CATTTC--CT-GATGAATGCTG--C-AA--TT--------T-C-------TGAAT------AT-AATGTATTTT-TTTCAGTAT--AAATA-A------ACTG-TAA--A-TTGC-A-TCAC---C-AAA-ATT-C--CTGT--TAA-A-----TC--------C------------A--T------GT----------------A----------C-TG-TACTA-CA--T-CA------ATCATAATCA-A-AC-----------T--GT---TAT-A--TGACAC-GGTGACC-----------CC---AA-TTATATTCA------CACCA--T-ATA-AA-ATC-AGTT--GA-TTAT-GAATC-CT-GAAATATACAG--T-GCTTGTGTA----CAT-TGA-GAgt
gi|6 : TGCAA-AGTAACCC-----AGTTACCAACAGC--AA-TGT-----GTCTC-A-T-C---T-A-C-AT-CAAA-----GCACAGT--TGCA---TG--CTGG--GA-AATAAT-G-----GA--TGCATGACCTTCATAAACCTTTCATTTAGAagttggaggagctcatgcaagagatttttttcttccttgatggtgcattgtttcaattctttcaatttgcacaaaaaccttatccatgaattctaatataaatccattatcttctgctgcaaagtaacccagttaccaacagcaatgtgtctcatctacatcaaagcacagttgcatgctgggaaataatggatgcatgaccttcataaacctttcatttaga
gi|7 : atgccatttgtgtgtaaacatttcaaataacacaaacatgatagggtatagtaacaattaatgcagacatgcactcaacatttatggcataaagacagtttatcaactgggtcagacgaggtcagcatcttagagtgagctagagtagttctactctcattgtgacaaaagttagagaggcatttcctgatgaatgctgcaatttctgaatataatgtatttttttcagtataaataaactgtaaattgcatcaccaaaattcctgttaaatccatgtactgtactacatcaatcataatcaaactgttatatgacacggtgaccccaattatattcacaccatataaaatcagttgattatgaatcctgaaatatacagtgcttgtgtacattgagaagttggaggagctcatgcaagagatttttttcttccttgatggtgcattgtttcaattctttcaatttgcacaaaaaccttatccatgaattctaatataaatccattatcttctgcC-AAAC-A-AAA-TGGAAAAT-TA-----T-TGC--TGT--AATTTAATCAA-AAT-TTAAA------CA--A-TCATTGCAATTTGT-GTGTTTACA---AACATT--CA-C--TT-CAC--T-ATGT-----ACTACG--GACACATTGTACATTTCTGTT-GC-A-GACA-----TCAAG-ATGTATGGCT-TACA--AGACAATTTCATTAAT--TGGGTCAGATGTGGTCAGCCTCT--GGG------A---------AAATTCAGATGTAGTCA--GTTACTCT-----GTGTTGTGCATGGAT-TAAGGAAAA-CATTTT--AT-GATGAA-GATGAACAAAATTT-------AT-C-------AGACTC-AGA-ATTAA-GTA-ATC-TTTCA---T--AGACA-AATGTT-ATTG-T-ATAA-TTGC-AGTCAC---CTCAACAT-----CAGTC-TAT-A--TGGTC---------------------A--TTGAAAAAT-------TATAA-TACC----------A-TGATA--A-AA--T-TGTTA---ATGATAATAA-G-----------C-TT--A---------------AC-AGCAAT-TTGTT-TATTTCC---AATAT-T-TTAA------TA-CA--TTATA-TA-TT-TAATTTTAA-T--T-GAATC-TTTGAAACA-------------G---A----C---------CATCT--TTAAATCG-TGGCCACTAGC-TTGCGTAACAGT-------------CTCCAGCAGC--AATTGT-----GGC-C-A-T-T---T-A---GT-CAGA-----ACACAAA--TGCA---TG--CT-G--GA-ATTAAT-G-----GA--TA-----GCTCCAT-ACCCTTTCATTTAGAGTGC-TTAA-TTG------TGAAATCT
gi|8 : GGGTCAGACCTAGTCGGCCTCT--GCG------G---------AAAA--------AA----------CCTCA--TGTGTTGTG-ATGAAAATAAGGGAAATCATTTC--CC-GATGAA-GATGG-CAAA--TTCGGAGGAAT-TTTCTAATAGAATC-GGA-AT-AA-GTA-ATC-TTTCA--GTGCAAACA-ATTGTT-ATCG-T-A--AATTGA-T-TTAC---C-AAAATTTAT--CAGTC-TAC-A--TGCTC--------C------------A--T------GTATATCTATA--A-T-CA----------A-TG-TA-TA-AA--T-TGT-----ATGACAATAC-A-GC----AGTATGTT--ATAA-TATCT--T---TT-AGCAATCTTGTT-TATTTCG---AG-ACAT-CTAA------TA-CA--T------A-TTCTAACT--GA-T--T-------TT-G-----T---G--T-T-TTG---G----CAT-TCA-GGCATCTCTTTA--TCA-TG--CACTAAT-T-ATGTAACAGTGACCC-A---AA-CTACAGCAGC--AA-TGA-----GTC-T-AAT-T---T-A-C-GT-CAGA-----ACACAGA--TGCA---TG--CTGG--GA-ATTCAT-G-----GA---AC----CTTCCATAAACC-------------GT-TTAA-TTG-----ATGACATTTCC-TA---GGAGA---A----ACGAACAAACAAGTTCTTAGCCA-----------CA--CT-------------TT----------TAAT---TTTTAGAAGAC---CT-AG-TTT-
gi|9 : AAA--TTT------ATAC-------AGGACC-GGAGAT-AA-GTA-ATC-TTTCA--ATA-AGACATAATGTTAATTGAT-A--C-ATGCGA-TCAC---C-AAAC---AT--CAGT--TATAA--TGGTCAATTTTGACGA----------A--T------ATAA-----TA--A-T-CA----------A-TG-TA-TG-AAGGT-TGT-----AT-ATAATCA-A-CCTTAGAGTCC-T----C---TAT-T-------C-AG-----TTCTT-TATTTCttcatcctaaagtgtttttttttcatgaacacttaatttagtttttgt
gi|9 : aaCC-C---AGTGCTCATTGGC--AA-TGTTTTGAGGC-C-A-T-TATTT-AAC-GTACAGACTTTGACACAGAATTACAGATTGACTTGGTAGACATTAAT-GTTAACGAGCTAC----CT--CATAATCTTCTAATTTAGAGTGTATTAA-TTGAATGCATAAAATCTCTGTAATCAGAGACTTA----ACAA------------------A-----------tgattagggcagccctatcttgtgttatccattaatccaaatagttctttccccaagataattttatacattggggcatgagtagtattcttgaaatatgtcatcatggtgtgaacaaatttcaagaggcggattctcttttcgtgtcatctaggactttcgattgtatgttcacatgttttttagcggccttcgataatcattcccagtgctcattggcaatgttttgaggccattatttaacgtacagactttgacacagaattacagattgacttggtagacattaatgttaacgagctacctcataatcttctaatttagagtgtattaattgaatgcataaaatctctgtaatcagagacttaacaaa
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|13 ): TTTAAAGTAGGTGTTCATGAAAATATGACAAAGGGTTTAAAATTGTCATTTTGATGTATATAATGAATTCTGAAAATAATAAAGATGTAGCTTTCTTCAGTAAGGAGATATCTTATAAAGATTAACAAATCTTTACAATCCATCGAACT
Unaligned ( gi|17 ): AGGAAGTGTTCATGAAAATATGACAAATGGTTTAAAGTATATAATGCTCTTTGAATATCATAGAGATATAGCTTCCTTCGGTAAGGACATATTTCATACGACAAACAAATCTTTACAATCC