lowQualScore : 111111111111111111111111111111111111111111111111111111111 111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111 11111111111
lowQualScore : 22 111 222 1 222222222222222222222222222222222222222222222222222222222 2 11 77777 1111 99999999999999999999999999999999999999999999999999999999999 22222 1 11 11 2222 44444 1 2 1 222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222 1 1111 333 11 22222 1111 4444444444 222222 111 555 1 1 2222222 2222 22222 111 11 66666666666666666 22222222 777777777777777777777777777777777777777777777 6666666666666666666666666 22222222222 111 444444444444444444444 3333333333 1 222222222 5555 1111 1111 111 33333333333 2222222222222 3333333333333 33333333 222222222 1111 11 5555555555555555555555555 5555555555555555 33 11 777777777777777777777777 1 1 555 111111 777777777777777777777777777777777777777 6666666666666666666666666 1111 111 2222 5555555555555555555555555555555555555 3333333333333333333333333 111 111 111 1111 11 00000000000 2 444444444444444444 22 111111 111
lowQualScore : 6 44 222 111 0 7 000000000000000000000000000000000000000000000000000000000 3 88 66666 3 3333 66 11111111111111111111111111111111111111111111111111111111111 0 22222 3 88 88 7 1 2222 77777 5 4 0 88 5 555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555 1 0 9999 111 11 00000 99 7777 8 1111111111 333333 8 777 666 5 33 8 0 99 1 6 2 5 8888888 5 1 1 2 3 1111 5 6 3 5 33333 55 111 5 5 5 3 0 11 4 00000000000000000 0 5 5 5 77 77 77777777 5 5 888888888888888888888888888888888888888888888 0 1 5 3 2 77 7777777777777777777777777 77 5 77 66666666666 000 4 5 5 777777777777777777777 0000000000 888 5 5 5 6 6 111111111 6 6 6 5555 4444 666 0000 6 2 222 00000000000 6 7777777777777 6 1 77 2 5 4 7777777777777 00000000 222222222 1111 5 77 88 6 11 4444444444444444444444444 4444444444444444 6 9 44 8 11 3 0 777777777777777777777777 0 0 222 3 333333 888888888888888888888888888888888888888 8 4444444444444444444444444 9999 77 5 8 444 4 2 0000 66 2222222222222222222222222222222222222 6 55 5 3 8 3 5 2222222222222222222222222 5 1 5 666 6 6 111 666 6 0000 77 9 44444444444 6 666666666666666666 5 5 77 3 1 55 5 55 777777 5 000 5
lowQualScore : . .. ... ... . . ......................................................... . .. ..... . .... .. ........................................................... . ..... . .. .. . . .... ..... . . . .. . ......................................................................................................... . . .... ... .. ..... .. .... . .......... ...... . ... ... . .. . . .. . . . . ....... . . . . . .... . . . . ..... .. ... . . . . . .. . ................. . . . . .. .. ........ . . ............................................. . . . . . .. ......................... .. . .. ........... ... . . . ..................... .......... ... . . . . . ......... . . . .... .... ... .... . . ... ........... . ............. . . .. . . . ............. ........ ......... .... . .. .. . .. ......................... ................ . . .. . .. . . ........................ . . ... . ...... ....................................... . ......................... .... .. . . ... . . .... .. ..................................... . .. . . . . . ......................... . . . ... . . ... ... . .... .. . ........... . .................. . . .. . . .. . .. ...... . ... .
lowQualScore : 0 00 000 000 7 0 000000000000000000000000000000000000000000000000000000000 3 33 00000 2 5555 55 99999999999999999999999999999999999999999999999999999999999 7 77777 3 33 33 7 0 7777 55555 5 0 0 00 0 333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333 0 0 5555 000 00 00000 00 0000 0 0000000000 000000 0 888 666 0 22 0 0 55 7 7 0 7 5555555 7 4 4 3 6 0000 7 6 0 7 00000 99 000 0 0 0 6 1 66 4 55555555555555555 1 0 0 0 99 99 77777777 7 7 333333333333333333333333333333333333333333333 1 7 7 2 5 77 5555555555555555555555555 99 7 99 00000000000 000 0 7 7 444444444444444444444 6666666666 666 7 7 0 7 7 888888888 7 7 7 5555 2222 888 5555 7 5 777 77777777777 7 5555555555555 7 0 77 5 7 9 1111111111111 33333333 999999999 4444 7 99 00 6 22 8888888888888888888888888 8888888888888888 4 6 22 0 00 8 8 000000000000000000000000 0 0 000 2 444444 666666666666666666666666666666666666666 0 2222222222222222222222222 4444 99 7 3 444 4 4 0000 11 2222222222222222222222222222222222222 6 99 7 0 7 6 7 7777777777777777777777777 7 7 4 777 7 7 777 777 7 5555 55 2 22222222222 2 777777777777777777 7 7 99 3 7 00 0 44 000000 7 000 7
consensus : NGGAAGCTTACAAGCATTCAATNAATGCNGNTTATTTTAAAA-TTTGAATTGACAATATG-CAGTA--TAGCGAA-AC-TATATATACA----CTAGTAT---CG-ATG--TTGC--TTGATGTTTAT--TTGAAATCAT-A---ATTAGAAGAAAAAC-ANAATAT------------T-GNTTTGG----GACCT-AACATATTCA-----AA-TGTA-A----TCATTGAGA-G-TTTATTGAAGT-GCAA--GATATTC--TAATTANATGTACGAT-A--TTCGTTCTTACTGCTTGTATTTAGNGAANNCGTGCACGTAGCATGTAGCANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAATATATGN------ATGTGCAT-GCA--AGGTG-ACTGT--AA-----ATAATTA----TG-TGAT------TTCCAAAGAG------AC-AACAAATT--TTCGAAAGATGAA-TTTCATTTTCGTTTATATACCGTATATTTTCA-CCTAGATGT-ATACTTCCN-A----TAT-TGTATGTAATCGTATGTACATTTT---NA-ATCGTATCTGCA-ATATT---A-TAA-TATCATAACAG-ATGT-TCGGTGTCGATAACCA-ACCAC---TATACATG--CATGATCAGA-TT-CCTGA-TTTCTGT--AA--A-CT-----GC-A-AA---C--TCGGAC-CA--TTCG----T-CAA--GC----TGTA---GGAAAAA-TATTCNACTCTGG-AC-----------AC---CT-------TCC--CTGA-TTG--AAAAC------AT-A-CTC---ACTG-G-C-------ACGGGTGAA-----GTGTG------GC--AGTCTGTA-TAG-T-GGAG-TG-ACAACGT-G--T-TCTG-TCGA-G-ATACAAA-TGGAG----TTTATTA-T-TTTGTTTCTTGGAT--TTAT-CAGAATA--AAGAGA--GTC---TA-ACA------TNTTT--GGTA-AGTGCACACCT-CCGGTCCCGGTAT-AGC-------------TTTCCGTA-------TTTG---------GT---AC-GT--TTTCTTGGCGAGCATGCGATGT---------GCAT------------TACATATGCAC---------------CAGNATTTTGCAAG-AACT-G--ATTGTG----------A-AC----------AAT-AAGTAT-TTT--ATGTTCTTTGCTTATTCCATTCTAT--TAG---TA---------T-----GC--T----AA--------ACGATTCC-GCCGCGA-------T----------TT---TTTACATGTTAC--TGAC--A-TGNTAGTT--GC-AAATAC----TTG--CA-----T-GTACA-T--G---ACATGCA----C-G-AAGTATGCAAGAAAAGCTTC-TTTT-TNTGCATTTTCA-TC-----TACAT----TA---------TC-TAAATTTTCACTAATATTCTAT-TGAT-ATAC-AA---TAAG-T-ATACTGTAA--TTT-TGAGCAATGCATG-TGTTT--AAACGTG-ATTTCAA-TTTGTTTCTCGTTT-CCCTATACATTAC-TAT-CGGA--GGTGTGCA--CGGTC-GAGTTCAGC-TA-NAAAATCAC-TCAGGTGTG---AC-AATCACTTTTG
Reference ( gi|2 ) : GGAAAGCTTACAAGCATTCAA-TAATACAAATTATTTTAAAAGTGTGGATTGACAAAATG-CGGTACTTAGCGAATACCTATATATACA----CTAGTATGCATG-ATGAGTTGC-TTTGATCTTTAT--TTGAAATCATCATGCATTAGAAGAAAAAC-ATAATAT------------T-GTTTTGG----GACCTAAATAAATTCA-----TA-TGTA-A----TCATTGGGA-G-TGTATTGAAGT-GCAA--GATATTC--TAATTATATGTATAAT-A--TTCATTCTTACTACATGTATTTAGAG-AAACGTGCACGTAGCANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAATGAATACACAACACACAT------ATGTGTAT-GCA--AGGTG-A-TGT--AA-----ATAAGTA----TG-TG-T------TCCCAAAGAG------AC-ACCGAATGCATTGAAAAGATGAA-TTTCATTTTCGTTTATATACCGTATATTTTCA-CCAAGATGT-ATACTTCCG-A----TAT-TGTATGTAACCATATGTACATTTT---GA-ATTGTATCTGCA-ATATT---G-TAA-TATCAGAGCAG-ATGT-TCAGTGTCGATAGCCA-ACTACG--TATACATG--CATGATCAGA-TT-CCTGA-TTTCTGT--AA--A-CT-----GC-A-AA---C--TCGGAC-CA--TTCA----TGCAA--GC----TGAA---GGAAAAA-TATTCGACTCTGG-AC-----------AC---CT-------TCC--CTGA-TTG--AAAAC------GT-A-CTC---ACTG-G-C-------ATGGGTGAA-----GTGTG------AC--AGTCTGTA-TAG-T-GCAG-TG-ACAAAGT-G--T-TCTG-TCGA-G-ATACTTT-TGGAG----TTTATTA-T-TTTGTTTCTTGGAT--TTAT-CAGAATA--AAGACA--GTC---TA-ACA------TATTT--GGTA-AGTGCACATCT-CCGGTCCCGGTAT-AAC-------------TTTCCGTA-------TTTG---------GT---GC-GT--TTTCTTAGCGAGCATGTGATGT---------GCAT------------TACATATGCAT---------------CAGCATTTCGCAAT-AACT-G--ATTGTG----------A-AT----------AAT-AAGTAT-TTTAAATGTTCTTTGCTTATTCCATTCTAT--TAG---TG---------T-----GT--T----AA--------ATGATTTC-GCCGCGA-------T----------TT---TGTACATGTTAT--TGAC--A-TGATAGTG--GC-AGATAC----TTG--CA-----T-GTACA-T--GA--ACATGCA----C-G-AAGTATGCAAGAAAAGTTTC-TTTT-TCTGTATTTTCA-TC-----TACAT----TA---------TC-TAAATTTTCACTAATATTCTAT-CGAT-ATAC-AA---TAAG-C-ATATTGTGA--TTA-TGAGTAATGC-----------AAACGTGAATTTCAATTTTG-TTCTCATTT-CCCTATACATTAC-TAT-CGGA--GATGTGCA--TGGTC-GAGTCCAGC-TA-AAAAATCAC-TCAGGTGTG---AC-AATCACTTTTG
gi|1 : GGAAGCTTACAAGCATTCAATTAATACAGATTATTTTAAAA-TTTGGATTGACAATATG-CAGTACTTAGCGAAAACGTATATATACA----CTAGTAT--ATGCATGAGTTGCGTTTGATGTTTAT--TTGAAATCAT-A---ATTAGAAGAAAAACAATAG-AT------------TAGTTTT-G----GACCT-AATATATTCA-----AA-TATAGA----TCATTGAGA-GTTTTATTGAAGT-GCAA--GATATTG--TAATTCTATGTATGAT-A--TTCATTCTTACTGCTTGTATTTAGAGAAAACGTGCACATA-CATGTAGCANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTTTGTCAATGAATAT-ACATTATGTGTA-TGC--AATGACTGTAAATAATTATG-TGAT------TTCCAAAGAG------ACGAC--AATA-ATTTGAAAGGTGAA-TTTCATTTTC-----TATACCGTATATTTTCA-CCTAGATGTAATACTTCCG-ATCATTAT-TGTATGTAACCATATGCACATTTT---GA-ATTGTATCTGCA-ATATT---A-TAA-AATCAGAGCAGAATGTGTCAGTGTCGATAACCA-AC--------TACATG--CATGATCAGA-TTCCCTGAGTTTCTGT--AA--ACCT-----GC-A-AA---C--TCGG-C-GA----CA----TTCAA--GC----TGAA---GG-AAAA-TATTCGACTCTGG-A------------AC---CT-------TCC--CTGA-TTG--AAAAC------GT-A-CTC---ACTG-G-C-------AC-GATGAA-----GTGTG------GC--AGCCTG---TAG-T-GGAG-TG-ACAAAGT-G-----GTG-TCGACG-ATACGAA-TGGAG----TTT-TTT-T-TTTGTTTCTT-GAT--TTAT-CAGAAT---AAGAGA--GTC---TA-ACA------TTTTT--GGTA-AGTGCACATCT-CCGGTCCCGGTAT-AAC-------------TTTCCGTA-------TTTT---------GT---GC-GT--TTTCTTAGCGAGCATGCGATGTTTTTAGCGAGCATGCGATGTGCATATACATATGCAG---------------CAGCATTTCGCAA--AACT-GAAATTG-A----------A-ATAATAATTGTGAAT-AAGTAT-TTT-AATGTTCTTTGC----------------TAG---TG---------T-----GTAATTGCAAA--------ATGATTTC-ACCG-GA-------TTTTTTTTTTCTT---TTTACATGTTAT--TGAC--A-TGATAGTG--GG-AAATAC----TTG--CA-----T-GTACACT--GT--ACATGCA----C-G-AAGTATGCAAGAAAAGTTTC-TTTT-TCTGCATTGTCA-TC-----TACAT----TA---------TC-T-AATTTTCACTAATATTCTAT-TGATGATAC-AA---TAAGTT-ATATTGT-A--TTT-TGAGCAATGC-----------AAACGTGGATTTC----------CCC--TT-CCCTAAACATTAC-TAT-CGGA--GGTGTGCAC-TGGTC-GAGTACAAC-TAGAAAAATCAC-TCAGGTGTG---AC-AATCACTTTTG
gi|9 : AACTTACAAGCATTCAA-AAATGTCGCTTAATTTGATATTTTCAATTGATAATATGGCAGTAAGT-GCGAA-ACCTATATATACAGACGCT-GTAT---CG-GTG--------TTAAT----AT--TTAAACTCACCAT----TAGA-GAAAAAC-AAAATATATTTAGTATATTT-GGTTTGGTCTAGACTTTAACATATCAA-----AA-TGTA-AA---TCATAGGGA-G-TTTATTGAAGT-GCAA--GGTATTC--AAATTAACTATACAACAA--TTTGTTCg
gi|16 : ATTTTAAAAGTTTGAATTGGCAATATG-C-------AGC----------ATATA-------TAG-------G-AT---TTGC-ATTGATGTTTATATTTGAAATCAT---G-ATTAGAAGTAAAAC-AAAATAT------------T-AGTTTGG----accggatttaagctgctttgttta
gi|3 : TAAAACAAAAA---TAAT-T------------A-GTT--------GACCTAAC--ACTTCAGGATGTAATGTA-ACCACTCATTGAGATG-TCTATGTAAGTTGCAACGAATATACCATAATTAGATGTATGAT-AAATTCATTCTTAC-----GTA-TTAGTG-ATTTATGCACGTAGCAacacaagatgtgca
gi|17 : tatatttagaggagtgggAATATATAA------AAGTGCAT-GCA--AGGTG-AATGT--CA-----GTAATTA----TG-TG-A------T-----AGAG------AC-AACAAAT---TTCGAGAGATGAA-TTTTATGTTTGCTTATA-ATAGTGTGTTTTTGCCCAATATGT-tctcctttctttaannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncctatcggcctcctctcctcttcgtactccctctcctctcaccttctccttcgtctcctgttttgtcatgtctatgtatacaaagtatgtgctatttgaatggtgagcttgcagtgactgtttaaataagatgatgtgggggatccaaaggaggagacaacaacaaatttcttgaaagtgaaatttcattttcctttgttaaccgtatgtatacttccgatattgtatgttcatatatacatttttcaaaatcgtatctgcactattattaattatcataacagatgtcaggtatcgataacaaccaaattcagcgtttgtcaatcgcatcatatagtgaaaatcttccactgacccctcgagaaaacatgaccgtactcattggcacggaaagtgtagcccagtttgatagctggagtgacaagtgttctgtcgagatacaaatggaggttctttattattttgttctttgcattttttgctaaggtgtagacatgctcacgttttaccggtatattctttcgttatggtacgttttctttggcgtgcattacatatgcatttttatgcgacgatccagtatttgcacccaactagactgtgttctgtggccatataattaagcatttatgttctttgcttattccattattaggtatgtaatttgctaaatgattttgccgcgatttctatttacatgtcactaacatgctagttgccaaataccttggccattgtacatgccacgtatgcaagaaaatcttctatttttgttgaacatttcataatttatcactaatatt
gi|19 : a------ATGTGCATTGCA--AGGTG-ACTGT--AA-----ATAATTA----TG-TGAT------TTCCAAAGAA------AC-AACAAATT--TTGAAA
gi|3 : aagT-GCA----GTG-ACTGTTTAA-----ATAAG-A----TGATG-TGGGGGATCCAAAGGAGGAGACAAC-AACAAATTTCTTGAAAG--TGAAATTTCATTTTCCTTTGTTAACCGTAT---------------GT-ATACTTCCG-A----TAT-TGTATGT--TCATATATACATTTTTCAAA-ATCGTATCTGCA-CTATT---ATTAATTATCATAACAG-ATGT-CAGGTATCGATAA-CA-ACCAg
gi|4 : tatatttagaggagtgggtaaaacaaaaataattagttgacctaacacttcaggatgtaatgtaaccactcattgagatgtctatgtaagttgcaacgaatataccataattagatgtatgataaattcattcttacgtattagtgatttatgcacgtagcatctcctttctttaannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncctatcggcctcctctcctcttcgtactccctctcctctcaccttctccttcgtctcctgttttgtcatgtctatgtatacaaagtatgtgctatttgaatggtgagct--AA-----ATAATTA----TG-TG-A------TTCCAAAGAA------AC-AACAAAT---TTTGTAAGATGAA-TTTCATTTTGGTTTATATATCGTATATTTTCA-CCTAGATGT-ATAATTCCC-A----TAT-TGTATGTAATCATATGTACATTTT---CA-ATCGTATCTG-A-ATAAT---A-TA--TATCATAATAG-ATGT-TCGGTGTCGATAATTA-ACCAC--------ATG--CATGATCAGA-TT-CCTGA-TTTCTGT--AA--A-CT-----GC-A-AAA--C--TCGGAC-CA--CTCAAGCATTCAA--TA----TATA---CGAAAAC-TATTCCACTCTGG-AC-----------AT----T-------TCC--CTGA-TTG--AAA-C------AT-A-CTT---A-TG-G-C-------ACGTGGCAA-----GTGTG------GC--AGTCTGTA-TAG-T-GGAG-TG-ACAACGT-G--T-TCTG-TCGA-G-ATACAAA-TGGAG----TTTATTA-T-TTTGTTTCTTGGAT--ATAT-CAGAATA--AAGAGA--GTC---TA-ACA------TA-TT--GGTA-AGTGCACACCT-CC-GTCCCGGTAT-AGC-------------TTTTCGTATTGCCATTTTA---------GT---AC-GT--TT--TTGGCGAGCATGCTATGT---------GCAT------------TACATGTGCAC---------------CAGGATTTTGCAAG-AACT-G--ATTGTG------------AC----------AAG-AAGTAT-TT---ATGTTCTTTGCTTATTCCATTCTATAGTAG---TAAT-------T-----GC--T----AA--------ACGATTCC-GCCGCGA-------T----------TT---T-TACATGTTA---CGAC--A-TGCTAGTT--GC-AAATAC----TTA--CA-----G-GT-----------ACATGCA----C-----GTATGCAAGAAAAGCTTC-TTTT-TGCGCATTTTCA-TCTAAATTACATATTGTA---------TC-TAAATTTTCAATAATATTTCAT-TGAT-ATACAAA---TAAG-T-ATACGTTAA--TTT-TGAGCAATGCATGATGTTTA-AAGCGTG-ATTTCA--TTTGTTTCTCATT---CCTATACATTAC-TAT-CGGA--GTGGTGCAC-TGGTC-GAGTTCAGC-TA-CAAAATCAC-TCAGGTGTG---AC-AATCAATTTTGaattcagcgtttgtcaatcgcatcatatagtgaaaatcttccactgacccctcgagaaaacatgaccgtactcattggcacggaaagtgtagcccagtttgatagctggagtgacaagtgttctgtcgagatacaaatggaggttctttattattttgttctttgcattttttgctaaggtgtagacatgctcacgttttaccggtatattctttcgttatggtacgttttctttggcgtgcattacatatgcatttttatgcgacgatccagtatttgcacccaactagactgtgttctgtggccatataattaagcatttatgttctttgcttattccattattaggtatgtaatttgctaaatgattttgccgcgatttctatttacatgtcactaacatgctagttgccaaataccttggccattgtacatgccacgtatgcaagaaaatcttctatttttgttgaacatttcataatttatcactaatatt
gi|15 : GAA-TTTCATTTTCCTTTGTAAGCCGTATATTTTCA-CCTAGATGT-ATACTTCCG-A----TAT-TGTATGTAATCATATGTACATTTT---CA-ATCGTATCTGCA-ATATT---A-TAG-TATCATAACAG-ATGT-TCAGTGTCGATAACTA-AC--------CACATG--AATGATCAGA-TT-CCTGT-TTT
gi|11 : TTCATAT----TATATTTTCA-CCCAGATTT--TAATTCCT-ATCATTAT-TGTATGTAATCGTG-------TTT---AA-AT--AATCTGTA-A-ATTTTCA-TAA-TATTCAAACAT-ATGT-CCAG---------------TACG--TAAATAT----ATGATCAGCTTT-CCTAA-TCTCTGT--AA--A---------C-A-AA---TAATTGCATGCA--T--A----TACAA--GTG---TGCA---AGAAAAA-a
gi|5 : ttgcaaaggcgtgaagatccatttaaaaaaataaTGT-ATACTTCCCCA----TATGTGTA-GTAATT-CATG-ACATTTT---CA-ATCGTATCTGAA-TTAAT---A-TAA-TA--ATAATAG-AT-T-TCGTTGTCGATAATTA-ACCAC--------ATG--CATGATCAGA-TT-CCTGA-TTTCTGTGAAA--A-C------GC-A-AAAAAC--TCGGAC-CA--C-CG----T-CAA--GCATCATATA---GGAAAAAATATTCCACTCTG--AC-----------AT----T-------TCC--CTGA-TTG--AAAAT------AC-AACTCCAAATTTTG-CCCCCCCCGTGGC--AA-----GT-TG------GC---GTCTGTA-TAG-T-GGAGCTG-ACAACGTTG--TCTCTG-T--G-G-ATACCAAATGGAG----TT-ATTA-T-TTGATTTCTTGGAT--ATAT-CAGAATT--AAGAGA--GTC---TA-ACATACATGTATTT--GTCA-AGTGCACACCT-CCGGTCCCGGAATCAGC-------------TTTTCGTA-------TTTGCCATCTTTAGT---AC-GT--TT--TTGGCGAGCATGC-ATGT---------G-A--------------ACATGTGCAC---------------CAGGGATTTGCAAGAAACT-G--A-TGTG----------A-
gi|3 : gatT-TGT---TAACCGTATGTATACTTCC--GATATTGTATGTTCATATAT--------A-CAT----------TTT-TCAAAATCG-TATCTGCACTAT---TATTAATTATCATAA-CAGA-TG-TCAGG-TATCGAT--AACAA-C-------C-A-AA---T--TCAG---CG--TTTG----T-CAATCGCATCATATA---GTGAAAA-TCTTCCACT---G-AC------------C---CC-------TC-----GA---G--AAAACATGACCGT-A-CTC---ATTG-G-C-------ACGGA--AA-----GTGTA------GCCCAGTTTG-A-TAGCT-GGAG-TG-ACAA-GT-G--T-TCTG-TCGA-G-ATACAAA-TGGAGGTTCTTTATTA-T-TTTGTTCTTTGCAT--TTTT-TGC--TA--AGG------TG---TAGACA------TGCT------------CACGTTT-----TACCGGTAT-ATT-------------CTTTCGT--------TATG---------GT---AC-GT--TTTCTT----------TGGCGT---------GCAT------------TACATATGCATTTTTATGCGACGATCCAGTATTT-GCACCCAACTAG--ACTGTGTTCTGTGGCCATAT----------AATTAAGCAT-TT---ATGTTCTTTGCTTATTCCATT--AT--TAGGTATG---------TAATTTGC--T----AA--------ATGATTTT-GCCGCGA-------T----------TTCTATTTACATGTCAC--TAAC--A-TGCTAGTT--GCCAAATACC---TTGGCCA-----TTGTACA-T--G----C---CA----C-G----TATGCAAGAAAATCTTC-TATT-TTTG----TTGA---------ACAT----T----------TCATAATTTATCACTAATATT
gi|14 : tatatttagaggagtgggtaaaacaaaaataattagttgacctaacacttcaggatgtaatgtaaccactcattgagatgtctatgtaagttgcaacgaatataccataattagatgtatgataaattcattcttacgtattagtgatttatgcacgtagcatctcctttctttaannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncctatcggcctcctctcctcttcgtactccctctcctctcaccttctccttcgtctcctgttttgtcatgtctatgtatacaaagtatgtgctatttgaatggtgagcttgcagtgactgtttaaataagatgatgtgggggatccaaaggaggagacaacaacaaatttcttgaaagtgaaatttcattttcctAG-ATGT-TCGGAGAAGAAAACCA-AC--CC--TATG------------CAGA-TT-CCTGA--TTCTAT--AA--A-CT-----GCAA-AA---CA-CCTGAC-CA--GTCA----AGCA----T----TCAATCTACAAATA-TATTCGACTCAGA-AC-----------A-------------TCC--CTAA-TTGGAAAAAA------AT-A-CTT---ACTG-G-C-------ACTGGTGAA-----ATGTGTT----GT--AATCCGTA-TAA-T-
gi|7 : tCA-ACCATGGTCACACGTG--TAAAATCGGA-TT-CCTGA-TT-CTGT--AA--A-CCTCTTGGC-ATAA---G--TC--ACGCAATTTCA----T---A--AT----TGTA---GGAAA---T-TCCGACTCTGGTACGTGATTGAAAAACTCGCTATGTTAGTCCTGCTGAATTG--AAAAC------ATTG-CTC---ATTG-GGC-------ACGAG-GAACAAGTGTGTGCTCCAGAT--ACCCTGGAGTAT-TCGGAG-TGTACAT-GT-T--T-TCTGCTCGA-GTATACAAA-TGAGA----TTTATTAATATTTGTTTCTTGGATATTCATACAGAATATAAAGATGACGTTAGATA-ACAC-----TATTTCTGGTATAGTGCACACCTTCCGGTCCCGGTAT-ATCTGAAAAATGCTTGTTCCCGTATG-----TTTG---------GTGACGC-GTAATTTTTTGGCGAGCA
gi|13 : a---CT-------CTC--ATGA-TTG--AAGAC------A----------GCTG-G-T--------TTAGT--------GTGTC------GC--AGTTTGTA-TAA-T-GGAG-TT-ACAATAT-ATTT-TCTG-TCGG-A-ATACAAA-TGGAG----TTTATCA-C-CTAATTTGTGGAAT--T--C-CA-AATA--GAG-TG--GAA---TA-ACG------CTTCC--GGTT-AGAACACAT-T-TCGG--CAAGAAA-AACA------------TTTCCG-G-------TTCG---------CT---ACAGT--TGTCCCAG
gi|6 : tT-AGC-------------TTTCCGTT-------TTTG---------GA---AC-GT--TTTAGTGGCGAGCATGCAATGT---------GCAT------------TACATATGCAC---------------CAGTATTTTACAAG-AAAT-G--ATTGTG----------A-AC----------AAT-AAGTATGTTT--ATGTTCTTTGCTTATTCCATTCAAT--TAG---TATATGTAACTT-----GC--T----AA--------ATGATCCC-ATCGCGATATTTTTT----------TT---TTTACATGTTAC--TGAC--A-TGCTAGTT--GC-AATTAC-----TG--CA-----T-GT-----------ACACGCA----C-----GTATGCAAGAAAAGCTTC--TTT-TGTGCA-----A-TC--------------TA---------TC-TAAATTACCACTAATATTCTAT-TTAT-ATAC-AA---TACG-T-ATACTGTAA--TTT-TGAGCAATACATACTGTTTTAAAACGTG-ATTTCA--TTTGTTTCTCA-TT-CCCTATGCATTAC-TAT-CGGA--GGTGTGCA--CGGTC-GAGTTCAGC-T--AAAAATCAC-TCGGGTGTG---AC-AATTACTTTTG
gi|8 : TCTAT--TAG---TA---------T-----GT--T----AATTGCTTAAACGATTCCCGCCTCGA-------T----------TT---ATTACATGTTAC---GAC--AATG-CAGTT--GC-AAATAC----TTA--CA-----G-TTACA----------ATGC-----C-G-A----TGCAAGAAAGGCTTC-TTTTATGCGCATTTTCAATC-----TAAAT----TACATATTGAATC-TAAATT--CACTAATATTCTAT-TGAT-ATAC-AA---TAAG-T-ATACTGTAA--TTT-TGAG-AATGCATGATGTTTTTAAACGTG-ATTTC-ATTTTG-TTCTC--TT-CCCTATAC-TTAC-TTT-CGGA--GGTGT-CA--CTGTCGGAGGTCAGCTTA-CAAAATCAC-TCAG--GTG---ACGAATCACTTTTGggg
gi|3 : TGTTATGATAATTAA-TAATAGTG---C-AGATACGATTTTG--AAAAATGT-ATATA-T--GA--ACATACAATATCGG-AAGTATACAga
gi|15 : tatatttagaggagtgggtaaaacaaaaataattagttgacctaacacttcaggatgtaatgtaaccactcattgagatgtctatgtaagttgcaacgaatataccataattagatgtatgataaattcattcttacgtattagtgatttatgcacgtagcatctcctttctttaannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncctatcggcctcctctcctcttcgtactccctctcctctcaccttctccttcgtctcctgttttgtcatgtctatgtatacaaagtatgtgctatttgaatggtgagcttgcagtgactgtttaaataagatgatgtgggggatccaaaggaggagacaacaacaaatttcttgaaagtgaaatttcattttcctttgttaaccgtaTGTTAT---GAT--A-CTATAATATTGC-AGATACGA--TTG--AAAA---T-GTACA-TATGATTACATACAATATC-GGAAGTATACAgatgtcaggtatcgataacaaccaaattcagcgtttgtcaatcgcatcatatagtgaaaatcttccactgacccctcgagaaaacatgaccgtactcattggcacggaaagtgtagcccagtttgatagctggagtgacaagtgttctgtcgagatacaaatggaggttctttattattttgttctttgcattttttgctaaggtgtagacatgctcacgttttaccggtatattctttcgttatggtacgttttctttggcgtgcattacatatgcatttttatgcgacgatccagtatttgcacccaactagactgtgttctgtggccatataattaagcatttatgttctttgcttattccattattaggtatgtaatttgctaaatgattttgccgcgatttctatttacatgtcactaacatgctagttgccaaataccttggccattgtacatgccacgtatgcaagaaaatcttctatttttgttgaacatttcataatttatcactaatatt
gi|11 : gaatttcattttcctttgtaagccgtatattttcacctagaC-AAATAA----TTG--CA-----T-G-------------CATATA----C---AAGTGTGCAAGAAAAgatgttcagtgtcgataactaaccacatgaatgatcagattcctgtttta
gi|12 : ttgcaaaggcgtgaagatccatttaaaaaaataattcatattatattttcacccagattttaattcctatcattattgtatgtaatcgtgtttaaataatctgtaaattttcataatattcaaacatatgtccagtacgtaaatatatgatcagctttcctaatctctgtaaa-AAATAA----TTG--CA-----T-G-------------CATATA----C---AAGTGTGCAAGAAAAA--AC-CTTT-TCT-TACTTTCT-TC-----GGAAT----GA---------TC-TTAACTTTCAA-AATCTTATACACAGT-ATAC-GCTTTTAAA-CAATA-TATGACGTTA-TGAAT-------------------CGTT-ATTTCAG--TTG-TT----TAT-C---ATACATTA--TACACGTA--GGTGTACAT-TGGTC-GAG------------------C-GCAGGTGTG---AC-AATa
gi|10 : A-----T-GTACA-T--GA--ACATGCA----C-G-AAGTATGTAAGAAAAATTTCCTTTT-TCTGCATTTTCA-TC-----TACAT----TA---------TC-TAAATTTTCACTAATATTCTAT---A----AC-AA---TAAA-T-AT-TTGCGC--TTGTTGAGCAATGCGAG--------GAACGTGATTTT--ATTATGTTTCTCGTGTACCCTATACATTACTTAT-CGGAATGAT-TGCAGCTGGTC-GAGTCCAAG-CA-GAAAATCTCTTCAGATGTGACCAC-AATCACTTTTGaaactctgg
gi|18 : TT-TCTTATGCATTAC-TGT-TTGA--GATGCACA--CGATC-gt
gi|20 : attttcagcagcacaggatgttttaaaataaatgcacgtgcatcttaccggtaGGTT-GAGTCTAGA-TA-CAAAGTCAA-TCAGGTGTG---AC-AATC
Alignments
lowQualScore : 22 1 1 1 1 88888888888888888888888888888888888888888888888888888888 111 22222 222222 444444444444 2222222 111 222222 333333 1 1 1 11 11 1111 3333333 11 222 88888888888888888888888888888888888888888888888888888888888888888888888888888888888 111 11 22222222 1111 222222222222 2222 44444444444 2222222 66666666666666666666666666666666666666666666 5555555555555555555555555 22222222 222222222 11 111 1111 1111 1111111 1111111 222222 111 222222222222222 22222222 222222222 1111 111 3333333333333333333333333 11111 1111 33333333333333 444444444444 11 11 5555555555 22222222 555555555555555555 111 333333333 222 111111 222222222222222 66666666666666 1 111 22222 1111 11
lowQualScore : 11 0 1 1 0 0 0 0 77777777777777777777777777777777777777777777777777777777 0 777 00000 3 333333 1 8 8 111111111111 1 2222222 8 8 444 333333 222222 0 0 0 0 33 33 1 2 4444 2 2222222 33 33 3 2 3 1 222 6 33333333333333333333333333333333333333333333333333333333333333333333333333333333333 111 8 11 8 55 5 99 99 11111111 4444 999999999999 3 6 6 55 0 2 5 5 66 1111 5 0 6 2 9999 66 1 33 0 888 5 5 5 88 3 4 4 1 4 4 44444444444 66 4 4 4 1 66 66 5555555 5 22222222222222222222222222222222222222222222 888 1 1 5 3333333333333333333333333 66 5 66 00000000 888 2 5 5 666666666 888 88 555 0000 0 5 5 5 5 5 8 5 5 77 5 5 5 5 2222 5 5 3 0000000 0 77 1 888 2222222 666666 3 5 5 000 5 5 99 5 555555555555555 88888888 222222222 5 2222 333 9 9999999999999999999999999 66666 1 3 5555 6 99999999999999 1 333333333333 1 8 88 99 0 99 6 9999999999 44444444 0 6 000000000000000000 111 7 6 1 6 5 77 5 777777777 111 5 5 5 1 33 5 555555 111111111111111 5 0 3 44 5 5 5 1 9 5 44444444444444 1 5 5 777 4 88888 5 5 66 0 4444 4 33 5 22 5 888 5
lowQualScore : .. . . . . . . . ........................................................ . ... ..... . ...... . . . ............ . ....... . . ... ...... ...... . . . . .. .. . . .... . ....... .. .. . . . . ... . ................................................................................... ... . .. . .. . .. .. ........ .... ............ . . . .. . . . . .. .... . . . . .... .. . .. . ... . . . .. . . . . . . ........... .. . . . . .. .. ....... . ............................................ ... . . . ......................... .. . .. ........ ... . . . ......... ... .. ... .... . . . . . . . . . .. . . . . .... . . . ....... . .. . ... ....... ...... . . . ... . . .. . ............... ........ ......... . .... ... . ......................... ..... . . .... . .............. . ............ . . .. .. . .. . .......... ........ . . .................. ... . . . . . .. . ......... ... . . . . .. . ...... ............... . . . .. . . . . . . .............. . . . ... . ..... . . .. . .... . .. . .. . ... .
lowQualScore : 33 7 0 0 0 0 0 0 55555555555555555555555555555555555555555555555555555555 2 000 88888 8 000000 0 0 0 000000000000 0 8888888 0 2 888 000000 222222 0 8 0 0 88 88 0 0 8888 0 5555555 88 55 5 5 2 0 333 7 00000000000000000000000000000000000000000000000000000000000000000000000000000000000 000 0 00 0 88 0 22 22 33333333 2222 777777777777 8 7 7 66 1 4 7 7 00 2222 0 1 2 0 8888 99 4 55 5 888 0 1 0 22 1 4 4 9 7 0 33333333333 11 4 4 4 9 99 99 6666666 0 22222222222222222222222222222222222222222222 555 4 0 7 4444444444444444444444444 99 0 99 22222222 888 2 0 0 000000000 888 88 666 6666 1 0 0 0 7 7 9 7 7 99 7 7 7 7 1111 7 7 0 1111111 7 99 4 000 4444444 444444 0 7 7 000 7 7 22 7 444444444444444 11111111 999999999 7 1111 777 3 3333333333333333333333333 77777 0 5 0000 7 22222222222222 7 222222222222 4 0 66 00 8 22 7 2222222222 22222222 7 7 000000000000000000 777 3 7 0 7 7 99 0 444444444 111 0 0 0 0 22 0 666666 888888888888888 0 4 6 33 7 7 7 4 3 7 00000000000000 4 7 7 444 9 77777 0 0 99 2 8888 4 00 0 66 0 888 0
consensus : NGGAAGCTTACAAGCATTCAAT-AATACAGATTATTTTAAAA-TT-TG-GATTGACAATATG-CAGTACTTAGCGAA-A-CCTATATATACA----CTAGTATGCG--CGATG--TTGCG-TT-GATGTTTAT--TTGAAATCAT-A---ATTAGAAGA------AAAACAAAA-TA-T------------TAGTTTGG----GACCT-AACATA--TTCA------AATGTA-A----TCATTGGGA-GTTT-ATTGAAGT-GCAA--GATATTC--TAATTANATGTATGAT-A--TTCGTTC-------TTA--CTGCTTGTATTTAGAGAAA-CGTGCACGTAGCATGTAGCANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAATGAATACACAATATACAN-ATG-TG--CAT-GCAAGGTGACTGT--AAATAA--TTATGTG----ATTTCCAAAG----AGACAACAA---ATT--T-T-GAAAGATGAA-TTTCATTTTCGTTTATATACCGTATATTTTCACCTAG-ATGTA-TACTTCCN-AT----AT-TGTATGTAATCGTATGTACATTTTC---AAT--CGTATCTGCAATATT---AT-AAT-A-TCATAACAGA-TGT-TCGGTGTCGATAACCA-ACCAC----ATACATG--CATGATCAGA-TTCC-TGA-TTTCTGT--AA--AC-T-----GCA-AAA---C--TCGGAC--CATTCG-----T---CA-A--GCGT----TGTAGGAAAAA-TATTCGACTCTGG-AC-----------AC---CT-------TCC--CTGA-TTG--AAAACAT------A-CTC---ACTG-G-CACGG---GTG--AA---GTGTGT-GC---AG----TCTGTA-TAG-T-GGAG-TG-ACAACGT-GT-T--CTG-TCGA-G-ATAC-AAATGGAG----TTTATTA-T-TTTGTTTCTTGGAT--TTAT-CAGAATA--AAG-A-GA-GTC---TAACA------TNTTTGGTA-AG-TGCACAC---CT-C-CGGTC--CCGGTAT-A----------GC---TTTCCGTA-------TTTG---------GT-ACGT----TTTC-TTGGCGAGCATGCGATGT---------GCAT------------TACATATGCA-----CCAGNATTTCGCA-AG-AACT-G--------------ATTGTG----------A-ACAA-TAAGTAT-TTTA-ATGTTCTTTGCTTATTCCATTCTAT--TA-GTA---------TGCTAA--------ACGATTCC-GCCGCGA-------T----------TT---TTTACATGTTACTGACA-TGCTAGTTG-CAAATA-CTTG--CA-TGTACA-TG-A-CATGCACGAAGTATGCAAG-AAAAGCTTC-TTTT-TNTGCATTTTCA-TC-----TACAT----TA---------TC-TAAATTTTCACTAATATTCTATTGAT-ATAC-AATAAG-TATACTGTAATT-TTGAGCAATGCATGATG--TT-T--AAA-CGT-G-ATTTCANTTTGTTTCTCATTT-CCCTATACATTAC-TAT-CGGAGGTG--TGCA--C-GGTC-GAGTCCAGC-TA-NAAAATCAC-TCAGGTGTG---AC-AATCACTTTTG
Reference ( family-362 ) : NGGAAGCTTACAAGCATTCAATNAATGCNGNTTATTTTAAAA-TT-TG-AATTGACAATATG-CAGTA--TAGCGAA-A-C-TATATATACA----CTAGTAT-----CGATG--TTGC--TT-GATGTTTAT--TTGAAATCAT-A---ATTAGAAGA------AAAACANAA-TA-T------------TGNTTTGG----GACCT-AACATA--TTCA------AATGTA-A----TCATTGAGA-GTTT-ATTGAAGT-GCAA--GATATTC--TAATTANATGTACGAT-A--TTCGTTC-------TTA--CTGCTTGTATTTAGNGAANNCGTGCACGTAGCATGTAGCANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAATATATGN-ATG-TG--CAT-GCAAGGTGACTGT--AAATAA--TTATGTG----ATTTCCAAAG----AGACAACAA---ATT--T-TCGAAAGATGAA-TTTCATTTTCGTTTATATACCGTATATTTTCACCTAG-ATGTA-TACTTCCN-AT----AT-TGTATGTAATCGTATGTACATTTTN---AAT--CGTATCTGCAATATT---AT-AAT-A-TCATAACAGA-TGT-TCGGTGTCGATAACCA-ACCAC---TATACATG--CATGATCAGA-TTCC-TGA-TTTCTGT--AA--AC-T-----GCA-AA----C--TCGGAC--CATTCG-----T---CA-A--GC------TGTAGGAAAAA-TATTCNACTCTGG-AC-----------AC---CT-------TCC--CTGA-TTG--AAAACAT------A-CTC---ACTG-G-CACGG---GTG--AA---GTGTG--GC---AG----TCTGTA-TAG-T-GGAG-TG-ACAACGT-GT-T--CTG-TCGA-G-ATAC-AAATGGAG----TTTATTA-T-TTTGTTTCTTGGAT--TTAT-CAGAATA--AAG-A-GA-GTC---TAACA------TNTTTGGTA-AG-TGCACAC---CT-C-CGGTC--CCGGTAT-A----------GC---TTTCCGTA-------TTTG---------GT-ACGT----TTTC-TTGGCGAGCATGCGATGT---------GCAT------------TACATATGCA-----CCAGNATTTTGCA-AG-AACT-G--------------ATTGTG----------A-ACAA-TAAGTAT-TTT--ATGTTCTTTGCTTATTCCATTCTAT--TA-GTA---------TGCTAA--------ACGATTCC-GCCGCGA-------T----------TT---TTTACATGTTACTGACA-TGNTAGTTG-CAAATA-CTTG--CA-TGTACA-TG-A-CATGCACGAAGTATGCAAG-AAAAGCTTC-TTTT-TNTGCATTTTCA-TC-----TACAT----TA---------TC-TAAATTTTCACTAATATTCTATTGAT-ATAC-AATAAG-TATACTGTAATT-TTGAGCAATGCATG-TG--TT-T--AAA-CGT-G-ATTTCAATTTGTTTCTCGTTT-CCCTATACATTAC-TAT-CGGAGGTG--TGCA--C-GGTC-GAGTTCAGC-TA-NAAAATCAC-TCAGGTGTG---AC-AATCACTTTTG
gi|1 : GGAAGCTTACAAGCATTCAATTAATACAGATTATTTTAAAA-TT-TG-GATTGACAATATG-CAGTACTTAGCGAA-AACGTATATATACA----CTAGTATATGCATGA-G--TTGCGTTT-GATGTTTAT--TTGAAATCAT-A---ATTAGAAGA------AAAACAATA-GA-T------------TAGTTTTG----GACCT-AATATA--TTCA------AATATAGA----TCATTGAGA-GTTTTATTGAAGT-GCAA--GATATTG--TAATTCTATGTATGAT-A--TTCATTC-------TTA--CTGCTTGTATTTAGAGAAAACGTGCACATA-CATGTAGCA
gi|1 : AATATACATTATG-TG--TAT-GCAA--TGACTGT--AAATAA--TTATGTG----ATTTCCAAAG----AGACGACAATA-ATT--T---GAAAGGTGAA-TTTCATTTTC-----TATACCGTATATTTTCACCTAG-ATGTAATACTTCCG-ATCATTAT-TGTATGTAACCATATGCACATTTTG---AAT--TGTATCTGCAATATT---AT-AAA-A-TCAGAGCAGAATGTGTCAGTGTCGATAACCA-AC--------TACATG--CATGATCAGA-TTCCCTGAGTTTCTGT--AA--ACCT-----GCA-AA----C--TCGG-CGACATTC-----------A-A--GC------TGAAGGAAAA--TATTCGACTCTGG-A------------AC---CT-------TCC--CTGA-TTG--AAAACGT------A-CTC---ACTG-G-CACGA----TG--AA---GTGTG--GC---AG----CCTGTA---G-T-GGAG-TG-ACAAAGT-GG-T----G-TCGACG-ATAC-GAATGGAG----TTTTTT--T-TTTGTTTCTTG-AT--TTAT-CAGAATA--A-G-A-GA-GTC---TAACA------TTTTTGGTA-AG-TGCACAT---CT-C-CGGTC--CCGGTAT-A----------AC---TTTCCGTA-------TTTT---------GT-GCGT----TTTC-TTAGCGAGCATGCGATGTTTTTAGCGAGCATGCGATGTGCATATACATATGCA-----GCAGCATTTCGCA-A--AACT-GAAATTGAAATAATAATTGTG--------------AA-TAAGTAT-TTTA-ATGTTCTTTGCT------AGTGTG---TA-AT----------TGCAAA--------ATGATTTC-ACCG-GA-------TTTTTTTTTTCTT---TTTACATGTTATTGACA-TGATAGTGG-GAAATA-CTTG--CA-TGTACACTGTA-CATGCACGAAGTATGCAAG-AAAAGTTTC-TTTT-TCTGCATTGTCA-TC-----TACAT----TA---------TC-T-AATTTTCACTAATATTCTATTGATGATAC-AATAAGTTATATTGT-ATT-TTGAGCAATGC--------------AAA-CGTGG-ATTTC---------CCC--TT-CCCTAAACATTAC-TAT-CGGAGGTG--TGCA--CTGGTC-GAGTACAAC-TAGAAAAATCAC-TCAGGTGTG---AC-AATCACTTTTGnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngtttgtcaatgaatatacattatgtgtatgcaatgactgtaaataattatgtgatttccaaagagacgacaataatttgaaaggtgaatttcattttctataccgtatattttcacctagatgtaatacttccgatcattattgtatgtaaccatatgcacattttgaattgtatctgcaatattataaaatcagagcagaatgtgtcagtgtcgataaccaactacatgcatgatcagattccctgagtttctgtaaacctgcaaactcggcgacattcaagctgaaggaaaatattcgactctggaaccttccctgattgaaaacgtactcactggcacgatgaagtgtggcagcctgtagtggagtgacaaagtggtgtcgacgatacgaatggagttttttttttgtttcttgatttatcagaataagagagtctaacatttttggtaagtgcacatctccggtcccggtataactttccgtattttgtgcgttttcttagcgagcatgcgatgtttttagcgagcatgcgatgtgcatatacatatgcagcagcatttcgcaaaactgaaattgaaataataattgtgaataagtattttaatgttctttgctagtgtgtaattgcaaaatgatttcaccggattttttttttctttttacatgttattgacatgatagtgggaaatacttgcatgtacactgtacatgcacgaagtatgcaagaaaagtttctttttctgcattgtcatctacattatctaattttcactaatattctattgatgatacaataagttatattgtattttgagcaatgcaaacgtggatttccccttccctaaacattactatcggaggtgtgcactggtcgagtacaactagaaaaatcactcaggtgtgacaatcacttttgg
gi|10 : ggaagcttacaagcattcaattaatacagattattttaaaatttggattgacaatatgcagtacttagcgaaaacgtatatatacactagtatatgcatgagttgcgtttgatgtttatttgaaatcataattagaagaaaaacaatagattagttttggacctaatatattcaaatatagatcattgagagttttattgaagtgcaagatattgtaattctatgtatgatattcattcttactgcttgtatttagagaaaacgtgcacatacatgtagcannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngtttgtcaatgA-TGTACA-TG-AACATGCACGAAGTATGTAAG-AAAAATTTCCTTTT-TCTGCATTTTCA-TC-----TACAT----TA---------TC-TAAATTTTCACTAATATTCTAT--A----AC-AATAAA-TAT-TTGCGCTTGTTGAGCAATGCGAG-----------GAA-CGT-G-ATTTTATTATGTTTCTCGTGTACCCTATACATTACTTAT-CGGA-ATGATTGCAGCT-GGTC-GAGTCCAAG-CA-GAAAATCTCTTCAGATGTGACCAC-AATCACTTTTGg
gi|11 : TTCATAT----TATATTTTCACCCAG-ATTT--TAATTCCT-ATCATTAT-TGTATGTAATCGTG-------TTTA---AAT--A--ATCTGTAA-ATTTTCAT-AAT-ATTCA-AACATA-TGT-CCAGTA-CG-TAA-----------------ATA--TATGATCAGCTTTCC-TAA-TCTCTGT--AA--A---------CA-AA----TAATTG-----CATGCA-----TATACA-A--GTG-----TGCAAGAAAAA-gt
gi|12 : ttgcaaaggcgtgaagatccatttaaaaaaataaAAATA-ATTG--CA-TG----------CATATAC-AAGTGTGCAAGAAAAAAC--C-TTTT-CTTAC--TTTCT-TC-----GGAAT----GA---------TC-TTAACTTTCA--AA-A-TCT-----T-ATAC-A--CAG-TATAC-GC--TT-TTAAACAATATATGACG--TTAT--GAATCGT-T-ATTTCAG-TTGTTTATC---------ATACATTA--TACACGTAGGTG--TACAT-T-GGTC-GAG------------------C-GCAGGTGTG---AC-AAT
gi|13 : ---CT-------CTC--ATGA-TTG--AAGACA---------------GCTG-G----------TT--TA---GTGTGTCGC---AG----TTTGTA-TAA-T-GGAG-TT-ACAATAT-AT-TTTCTG-TCGG-A-ATAC-AAATGGAG----TTTATCA-C-CTAATTTGTGGAAT--T--C-CA-AATA--GAGTG-GA-A-----TAACG------CTTCCGGTT-AG-AACACAT---TT-C-aaactctgg
gi|14 : tAGA-TGT-TCGGAGAAGAAAACCA-ACC-C---TATGCA------------GA-TTCC-TGA-TT-CTAT--AA--AC-T-----GCA-AAACACC--T--GAC--CA---G-----T---CA-A--GCATTCAATCTAC-AAATA-TATTCGACTCAGA-AC-----------A-------------TCC--CTAA-TTGGAAAAAAAT------A-CTT---ACTG-G-CACTG---GTG--AA---ATGTGTTGT---AA----TCCGTA-TAA-T-ggcaagaaaaacatttccggttcgctacagttgtcccag
gi|15 : tGAA-TTTCATTTTCCTTTGTAAGCCGTATATTTTCACCTAG-ATGTA-TACTTCCG-AT----AT-TGTATGTAATCATATGTACATTTTC---AAT--CGTATCTGCAATATT---AT-AGT-A-TCATAACAGA-TGT-TCAGTGTCGATAACTA-ACC--------ACATG--AATGATCAGA-TTCC-TGT-TTT
gi|16 : ATTTTAAAAGTT-TG-AATTGGCAATATG-CAGCA--TA----------------TA-------TAG---------GAT---TTGCA-TT-GATGTTTATATTTGAAATCAT-G---ATTAGAAGT------AAAACAAAA-TA-T------------TAGTTT-G----GACAC-AAGATG--TGCA------a
gi|17 : AATATATAA-AAG-TG--CAT-GCAAGGTGAATGT--CAGTAA--TTATGTG----AT------AG----AGACAACAA---A-T--T-TCGAGAGATGAA-TTTTATGTTTGCTTATA-ATAGTGTGTTTTTGCCCAATATGT
gi|18 : aTT-TCTTATGCATTAC-TGT-TTGAGATG--CACA--C-GATC-
gi|19 : attttcagcagcacaggatgttttaaaataaatgcacgtgcatcttaccggta-ATG-TG--CATTGCAAGGTGACTGT--AAATAA--TTATGTG----ATTTCCAAAG----AAACAACAA---ATT--T-T-GAAAG
gi|2 : aagGAAAGCTTACAAGCATTCAAT-AATACAAATTATTTTAAAA-GTGTG-GATTGACAAAATG-CGGTACTTAGCGAATA-CCTATATATACA----CTAGTATGCA--TGATGAGTTGC--TTTGATCTTTAT--TTGAAATCATCATGCATTAGAAGA------AAAACATAA-TA-T------------TGTTTTGG----GACCT-AA-ATAAATTCA------TATGTA-A----TCATTGGGA-GTGT-ATTGAAGT-GCAA--GATATTC--TAATTATATGTATAAT-A--TTCATTC-------TTA--CTACATGTATTTAGAGAAA-CGTGCACGTAGCANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAATGAATACACAACACACAT-ATG-TG--TAT-GCAAGGTGA-TGT--AAATAA--GTATGTG-----TTCCCAAAG----AGACACCGA---ATGCAT-TGAAAAGATGAA-TTTCATTTTCGTTTATATACCGTATATTTTCACCAAG-ATGTA-TACTTCCG-AT----AT-TGTATGTAACCATATGTACATTTTG---AAT--TGTATCTGCAATATT---GT-AAT-A-TCAGAGCAGA-TGT-TCAGTGTCGATAGCCA-ACTACG--TATACATG--CATGATCAGA-TTCC-TGA-TTTCTGT--AA--AC-T-----GCA-AA----C--TCGGAC--CATTCA-----TG--CA-A--GC------TGAAGGAAAAA-TATTCGACTCTGG-AC-----------AC---CT-------TCC--CTGA-TTG--AAAACGT------A-CTC---ACTG-G-CATGG---GTG--AA---GTGTG--AC---AG----TCTGTA-TAG-T-GCAG-TG-ACAAAGT-GT-T--CTG-TCGA-G-ATAC-TTTTGGAG----TTTATTA-T-TTTGTTTCTTGGAT--TTAT-CAGAATA--AAG-A-CA-GTC---TAACA------TATTTGGTA-AG-TGCACAT---CT-C-CGGTC--CCGGTAT-A----------AC---TTTCCGTA-------TTTG---------GT-GCGT----TTTC-TTAGCGAGCATGTGATGT---------GCAT------------TACATATGCA-----TCAGCATTTCGCA-AT-AACT-G--------------ATTGTG----------A-ATAA-TAAGTAT-TTTAAATGTTCTTTGCTTATTCCATTCTAT--TA-GTG---------TGTTAA--------ATGATTTC-GCCGCGA-------T----------TT---TGTACATGTTATTGACA-TGATAGTGG-CAGATA-CTTG--CA-TGTACA-TGAA-CATGCACGAAGTATGCAAG-AAAAGTTTC-TTTT-TCTGTATTTTCA-TC-----TACAT----TA---------TC-TAAATTTTCACTAATATTCTATCGAT-ATAC-AATAAG-CATATTGTGATT-ATGAGTAATGC--------------AAA-CGT-GAATTTCAATTTTGTTCTCATTT-CCCTATACATTAC-TAT-CGGAGATG--TGCA--T-GGTC-GAGTCCAGC-TA-AAAAATCAC-TCAGGTGTG---AC-AATCACTTTTG
gi|20 : g--C-GGTT-GAGTCTAGA-TA-CAAAGTCAA-TCAGGTGTG---AC-AATC
gi|3 : acAT-A---TTTAGAGGAGTGGGTAAAACAAAAATAAT------------TAGTT-------GACCT-AACAC---TTCAGGATGTAATGTA-ACCACTCATTGAGATGTCT-ATGTAAGTTGCAACGAATATACCATAATTAGATGTATGAT-AAATTCATTC-------TTA--C-----GTATT-AGTGA-TTTATGCACGTAGCAT
gi|3 : tTATTTGA-ATGGTGAGCTT-GCA--GTGACTGTTTAAATAAGATGATGTGGGGGAT--CCAAAGGAGGAGACAACAACAAATT--TCTTGAAAG-TGAAATTTCATTTTCCTTTGTTAACCGTAT---------------GTA-TACTTCCG-AT----AT-TGTATGT--TCATATATACATTTTTCAAAAT--CGTATCTGCACTATT---ATTAATTA-TCATAACAGA-TGT-CAGGTATCGATAA-CA-ACCActcctttctttaannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncctatcggcctcctctcctcttcgtactccctctcctctcaccttctccttcgtctcctgttttgtcatgtctatgtatacaaagtatgtgctatttgaatggtgagcttgcagtgactgtttaaataagatgatgtgggggatccaaaggaggagacaacaacaaatttcttgaaagtgaaatttcattttcctttgttaaccgtatgtatacttccgatattgtatgttcatatatacatttttcaaaatcgtatctgcactattattaattatcataacagatgtcaggtatcgataacaaccaaattcagcgtttgtcaatcgcatcatatagtgaaaatcttccactgacccctcgagaaaacatgaccgtactcattggcacggaaagtgtagcccagtttgatagctggagtgacaagtgttctgtcgagatacaaatggaggttctttattattttgttctttgcattttttgctaaggtgtagacatgctcacgttttaccggtatattctttcgttatggtacgttttctttggcgtgcattacatatgcatttttatgcgacgatccagtatttgcacccaactagactgtgttctgtggccatataattaagcatttatgttctttgcttattccattattaggtatgtaatttgctaaatgattttgccgcgatttctatttacatgtcactaacatgctagttgccaaataccttggccattgtacatgccacgtatgcaagaaaatcttctatttttgttgaacatttcataatttatcactaatatt
gi|3 : tatatttagaggagtgggtaaaacaaaaataattagttgacctaacacttcaggatgtaatgtaaccactcattgagatgtctatgtaagttgcaacgaatataccataattagatgtatgataaattcattcttacgtattagtgatttatgcacgtagcatctcctttctttaannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncctatcggcctcctctcctcttcgtactccctctcctctcaccttctccttcgtctcctgttttgtcatgtctatgtatacaaagtatgtgcTTCCT--------T-TGT---TAACCGTATGTATACTTCC---GATATTGTATGTTCA----T---AT-A-T-A--CAT-------TTT-TCAAAATCG-TATCTGCACTAT---TATTAATTATCATAA-CAGA-TGTC-AGG-TATCGAT--AACAAC--------CA-AA----T--TCAG----CGTTTG-----T---CA-ATCGCATCA--TATAGTGAAAA-TCTTCCACT---G-AC------------C---CC-------TC-----GA---G--AAAACATGACCGTA-CTC---ATTG-G-CACGG---A----AA---GTGTA--GCCC-AG----TTTG-A-TAGCT-GGAG-TG-ACAA-GT-GT-T--CTG-TCGA-G-ATAC-AAATGGAGGTTCTTTATTA-T-TTTGTTCTTTGCAT--TT----------------------------------------TTTGCTA-AGGTGTAGACATGCT-CACGTTTTACCGGTAT-A----------TT---CTTTCGT--------TATG---------GT-ACGT----TTTCTTTGGCGTGCATTACATAT---------GCAT------------T-TTTATGCGACGATCCAGTA-TTTGCACCC-AACTAG--------------ACTGTGTTCTGTGGCCATATAATTAAGCA--TTT--ATGTTCTTTGCTTATTCCAT--TAT--TAGGTATGTAATT--TGCTAA--------ATGATTTT-GCCGCGA-------T----------TTCTATTTACATGTCACTAACA-TGCTAGTTGCCAAATACCTTGGCCATTGTACA-TG---C---CAC---GTATGCAAG-AAAATCTTC-TATT-TTTG----TTGA---------ACAT----T----------TCATAATTTATCACTAATATTaattcagcgtttgtcaatcgcatcatatagtgaaaatcttccactgacccctcgagaaaacatgaccgtactcattggcacggaaagtgtagcccagtttgatagctggagtgacaagtgttctgtcgagatacaaatggaggttctttattattttgttctttgcattttttgctaaggtgtagacatgctcacgttttaccggtatattctttcgttatggtacgttttctttggcgtgcattacatatgcatttttatgcgacgatccagtatttgcacccaactagactgtgttctgtggccatataattaagcatttatgttctttgcttattccattattaggtatgtaatttgctaaatgattttgccgcgatttctatttacatgtcactaacatgctagttgccaaataccttggccattgtacatgccacgtatgcaagaaaatcttctatttttgttgaacatttcataatttatcactaatatt
gi|4 : tatatttagaggagtgggtaaaacaaaaataattagttgacctaacacttcaggatgtaatgtaaccactcattgagatgtctatgtaagttgcaacgaatataccataattagatgtatgataaattcattcttacgtattagtgatttatgcacgtagcatctcctttctttaannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncctatcggcctcctctcctcttcgtactccctctcctctcaccttctccttcgtctcctgttttgtcatgtctatgtatacaaagtatgtgctatttgaatggtgagcttgcagtgactgtttaaataagatgatgtgggggatccaaaggaggagacaacaacaaatttcttgaaagtgaaatttcatt--AAATAA--TTATGTG----ATT-CCAAAG----AAACAACAA---ATT--T-T-GTAAGATGAA-TTTCATTTTGGTTTATATATCGTATATTTTCACCTAG-ATGTA-TAATTCCC-AT----AT-TGTATGTAATCATATGTACATTTTC---AAT--CGTATCTG-AATAAT---AT-A-T-A-TCATAATAGA-TGT-TCGGTGTCGATAATTA-ACCAC--------ATG--CATGATCAGA-TTCC-TGA-TTTCTGT--AA--AC-T-----GCA-AAA---C--TCGGAC--CACTCAAGCATT---CA-A--TA------TATACGAAAAC-TATTCCACTCTGG-AC-----------AT----T-------TCC--CTGA-TTG--AAA-CAT------A-CTT---A-TG-G-CACGT---GGC--AA---GTGTG--GC---AG----TCTGTA-TAG-T-GGAG-TG-ACAACGT-GT-T--CTG-TCGA-G-ATAC-AAATGGAG----TTTATTA-T-TTTGTTTCTTGGAT--ATAT-CAGAATA--AAG-A-GA-GTC---TAACA------TA-TTGGTA-AG-TGCACAC---CT-C-C-GTC--CCGGTAT-A----------GC---TTTTCGTATTGCCATTTTA---------GT-ACGT----TT---TTGGCGAGCATGCTATGT---------GCAT------------TACATGTGCA-----CCAGGATTTTGCA-AG-AACT-G--------------ATTGTG------------ACAA-GAAGTA--TTT--ATGTTCTTTGCTTATTCCATTCTATAGTA-GTAAT-------TGCTAA--------ACGATTCC-GCCGCGA------------------TT---TTTACATGTTAC-GACA-TGCTAGTTG-CAAATA-CTTA--CA-GGT-------A-CATGCAC---GTATGCAAG-AAAAGCTTC-TTTT-TGCGCATTTTCA-TCTAAATTACATATTGTA---------TC-TAAATTTTCAATAATATTTCATTGAT-ATACAAATAAG-TATACGTTAATT-TTGAGCAATGCATGATG--TT-T--AAAGCGT-G-ATTTC-ATTTGTTTCTCATT---CCTATACATTAC-TAT-CGGAGTGG--TGCA--CTGGTC-GAGTTCAGC-TA-CAAAATCAC-TCAGGTGTG---AC-AATCAATTTTG
gi|5 : TGTA-TACTTCCCCAT----ATGTGTA-GTAATT-CATG-ACATTTTC---AAT--CGTATCTGAATTAAT---AT-AAT-A---ATAATAGA-T-T-TCGTTGTCGATAATTA-ACCAC--------ATG--CATGATCAGA-TTCC-TGA-TTTCTGTGAAA--AC-------GCA-AAAAA-C--TCGGAC--CAC-CG-----T---CA-A--GCATCA--TATAGGAAAAAATATTCCACTCTG--AC-----------AT----T-------TCC--CTGA-TTG--AAAATAC------AACTCCAAATTTTG-CCCCCCCCGTGGCAA---GT-TG--GC----G----TCTGTA-TAG-T-GGAGCTG-ACAACGTTGTCT--CTG-T--G-G-ATACCAAATGGAG----TT-ATTA-T-TTGATTTCTTGGAT--ATAT-CAGAATT--AAG-A-GA-GTC---TAACATACATGTATTTGTCA-AG-TGCACAC---CT-C-CGGTC--CCGGAATCA----------GC---TTTTCGTA-------TTTGCCATCTTTAGT-ACGT----TT---TTGGCGAGCATGC-ATGT---------G-A--------------ACATGTGCA-----CCAGGGATTTGCA-AGAAACT-G--------------A-TGTG----------A-
gi|6 : gatT-A----------GC---TTTCCGTT-------TTTG---------GA-ACGT----TTTA-GTGGCGAGCATGCAATGT---------GCAT------------TACATATGCA-----CCAGTATTTTACA-AG-AAAT-G--------------ATTGTG----------A-ACAA-TAAGTATGTTT--ATGTTCTTTGCTTATTCCATTCAAT--TA-GTATATGTAACTTGCTAA--------ATGATCCC-ATCGCGATATTTTTT----------TT---TTTACATGTTACTGACA-TGCTAGTTG-CAATTA-C-TG--CA-TGT-------A-CACGCAC---GTATGCAAG-AAAAGCTTC--TTT-TGTGCA-----A-TC--------------TA---------TC-TAAATTACCACTAATATTCTATTTAT-ATAC-AATACG-TATACTGTAATT-TTGAGCAATACATACTG--TT-TTAAAA-CGT-G-ATTTC-ATTTGTTTCTCA-TT-CCCTATGCATTAC-TAT-CGGAGGTG--TGCA--C-GGTC-GAGTTCAGC-TA--AAAATCAC-TCGGGTGTG---AC-AATTACTTTTG
gi|7 : CA-ACCATGGTCACACGTG--TAAAATCGGA-TTCC-TGA-TT-CTGT--AA--AC-CTCTTGGCATAA----G--TCACGC--AATT-------T---CATA--AT------TGTAGGAAA---T-TCCGACTCTGGTACGTGATTGAAAAACTCGCTATGTTAGTCCTGCTGAATTG--AAAACATT-----G-CTC---ATTG-GGCACGA---G-G--AACAAGTGTGT-GCTCCAGATACCCTGGAGTAT-TCGGAG-TGTACA-TGT-TT-T--CTGCTCGA-GTATAC-AAATGAGA----TTTATTAATATTTGTTTCTTGGATATTCATACAGAATATAAAG-ATGACGTTAGATAACACTA---TTTCTGGTATAG-TGCACAC---CTTC-CGGTC--CCGGTAT-ATCTGAAAAATGCTTGTTCCCGTATG-----TTTG---------GTGACGCGTAATTTT-TTGGCGAGCAggg
gi|8 : aTCTAT--TA-GTA---------TGTTAATTGCTTAAACGATTCCCGCCTCGA-------T----------TT---ATTACATGTTAC-GACAATGC-AGTTG-CAAATA-CTTA--CA-GTTACA-------ATGC-CGA----TGCAAG-AAAGGCTTC-TTTTATGCGCATTTTCAATC-----TAAAT----TACATATTGAATC-TAAATT--CACTAATATTCTATTGAT-ATAC-AATAAG-TATACTGTAATT-TTGAG-AATGCATGATGTTTT-T--AAA-CGT-G-ATTTCATTTTG-TTCTC--TT-CCCTATAC-TTAC-TTT-CGGAGGTG--T-CA--C-TGTCGGAGGTCAGCTTA-CAAAATCAC-TCAG--GTG---ACGAATCACTTTTG
gi|9 : AACTTACAAGCATTCAA-AAATGTCGCTTAATTTGATA-TT-TTCAATTGATAATATGGCAGTAAGT-GCGAA-A-CCTATATATACAGACGCT-GTAT-----CGGTG--TTA-------ATATTTA------AACTCAC-C---ATTAGA-GA------AAAACAAAA-TA-TATTTAGTATATTTGGTTTGGTCTAGACTTTAACATA--TCAA------AATGTA-AA---TCATAGGGA-GTTT-ATTGAAGT-GCAA--GGTATTC--AAATTAACTATACAACAA--TTTGTTCACCGGATTTAAGCTGCTT-TGTTTAga
Alignments
lowQualScore : 1 1 1 1 1 1111 11111 555555555555555 1 11 11 22222 222222 444444444444 2222222 111 222222 333333 1 1 1 11 11 22 3333333 11 1 777777777777777777777777777777777777777777777777777777777777777777777777 11 22222222 1111 111 111 2222 33333333333 2222222 66666666666666666666666666666666666666666 5555555555555555555555555 22222222 222222222 222 1111 1111 1111111 1111111 222222 111 222222222222222 22222222 222222222 1111 111 3333333333333333333333333 11111 1111 33333333333333 444444444444 222 5555555555 22222222 555555555555555555 111 333333333 222 111111 222222222222222 33333333333333 1 11 3333333333 1111 11
lowQualScore : 3 0 0 0 0 8888 55555 2 8 999999999999999 4 0 33 33 00000 3 333333 8 8 111111111111 2222222 8 8 444 333333 222222 0 0 0 0 33 33 1 33 2 2222222 33 33 3 2 3 3 6 222222222222222222222222222222222222222222222222222222222222222222222222 11 8 55 5 99 99 11111111 4444 888 111 99 3 6 6 55 0 2 5 5 66 4444 5 1 6 0 1 4 5 4 55 5 4 5 5 88888888888 7 4 4 4 4 66 2222222 44444444444444444444444444444444444444444 1 888 1 0 5 4444444444444444444444444 66 5 66 00000000 888 2 5 5 666666666 888 5 777 888 0000 0 5 5 5 5 5 8 5 5 77 5 5 5 5 2222 5 5 3 0000000 0 77 1 888 2222222 666666 3 5 5 000 5 5 99 5 555555555555555 88888888 222222222 5 2222 333 9 9999999999999999999999999 66666 1 6 5555 6 99999999999999 1 333333333333 1 8 444 0 99 6 9999999999 44444444 0 6 000000000000000000 111 7 6 6 5 77 5 777777777 111 5 5 5 1 33 5 555555 111111111111111 5 0 3 44 5 5 5 1 9 5 00000000000000 0 555 55 0 5 3333333333 5 5 66 0 4444 4 22 5 22 5 888 5
lowQualScore : . . . . . .... ..... . . ............... . . .. .. ..... . ...... . . ............ ....... . . ... ...... ...... . . . . .. .. . .. . ....... .. .. . . . . . ........................................................................ .. . .. . .. .. ........ .... ... ... .. . . . .. . . . . .. .... . . . . . . . . .. . . . . ........... . . . . . .. ....... ......................................... . ... . . . ......................... .. . .. ........ ... . . . ......... ... . ... ... .... . . . . . . . . . .. . . . . .... . . . ....... . .. . ... ....... ...... . . . ... . . .. . ............... ........ ......... . .... ... . ......................... ..... . . .... . .............. . ............ . . ... . .. . .......... ........ . . .................. ... . . . . .. . ......... ... . . . . .. . ...... ............... . . . .. . . . . . . .............. . ... .. . . .......... . . .. . .... . .. . .. . ... .
lowQualScore : 3 0 0 0 0 0000 88888 5 8 222222222222222 2 0 88 88 88888 8 000000 0 0 000000000000 8888888 0 2 888 000000 222222 0 0 8 0 88 88 0 88 0 5555555 88 55 5 5 2 3 7 000000000000000000000000000000000000000000000000000000000000000000000000 00 0 88 0 22 22 33333333 2222 333 777 22 8 7 7 66 1 4 7 7 77 3333 7 4 3 1 4 3 7 3 99 7 9 0 0 00000000000 4 4 4 4 4 99 8888888 88888888888888888888888888888888888888888 4 555 4 7 7 0000000000000000000000000 99 0 99 22222222 888 2 0 0 000000000 888 0 444 888 6666 1 0 0 0 7 7 9 7 7 99 7 7 7 7 1111 7 7 0 1111111 7 99 4 000 4444444 444444 0 7 7 000 7 7 22 7 444444444444444 11111111 999999999 7 1111 777 3 3333333333333333333333333 77777 0 3 0000 7 22222222222222 7 222222222222 4 0 444 8 22 7 2222222222 22222222 7 7 000000000000000000 777 3 7 7 7 99 0 444444444 111 0 0 0 0 22 0 666666 888888888888888 0 4 6 33 7 7 7 4 3 0 66666666666666 0 111 66 1 0 9999999999 0 0 99 2 8888 4 44 0 66 0 888 0
consensus : NGGAAGCTTACAAGCATTCAAT-AATACAGATTATTTTAAAA-TT-TG-GATTGACAATATG-CAGTACTTAGCGAA-ACC-TATATATACACTAGTATGCGC--GATG--TTGCGTT-GATGTT--TAT--TTGAAATCAT-A---ATTAGAAGA------AAAACAAAA-TA-T------------TAGTTTGG----GACCT-AACATA--TTCA------AATGTA-A----TCATTGGGA-G-TTTATTGAAGT-GCAA--GATATTC--TAATTANATGTATGATA-ATTCGTTC-------TTA--CTGCTTGTATTTAGAG-AAACGTGCACGTAGCATGTAGCANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAATGAATACACAATATACAN-ATGTGCAT-GCAAGGTGACTGT--AAATAA--TTATGTG----ATTTCCAAAG----AGACAACAA---AT---TT--TGAAAGATGAA-TTTCATTTTCGTTTATATACCGTATATTTTCACCTAG-ATGTA-TACTTCCG-AT----AT-TGTATGTAATCGTATGTACATTTTCAATC-GTATCTGCAATATT-ATAATA-TCATAACAGA-TGT-TCGGTGTCGATAACCAACCA----C--ATACATGCATGATCAGA-T-TCC-TGA-TTTCTGT--AAAC-T-----GCAAA-A--C-TCGGAC--CA--TTCGT---CAA--GCATC-----TGTAGGAAAAA-TATTCGACTCTGG-AC-----------AC---CT-------TCC--CTGA-TTG--AAAACAT------A-CTC---ACTG-G-CACGG---GTG--AA---GTGT-G-T-GC---AG----TCTGTA-TAG-T-GGAG-TG-ACAACGT-GT-T--CTG-TCGA-G-ATAC-AAATGGAG----TTTATTA-T-TTTGTTTCTTGGAT--TTAT-CAGAATA--AAG-A-GA-GTC---TAACA------TNTTTGGTA-AG-TGCACAC---CT-C-CGGTC--CCGGTAT-A----------GC---TTTCCGTA-------TTTG---------GT-ACGT----TTTC-TTGGCGAGCATGCGATGT---------GCAT------------TACATATGCA-----CCAGNATTTCGCA-AG-AACT-G--------------ATTGTG----------A-ACAA-TAAGTATTTT-AATGTTCTTTGCTTATTCCATTCTAT--TA-GTA---------TGCTAA--------ACGATTCC-GCCGCGA-------T----------TT---TTTACATGTTACTGACA-TGCTAGTTG-CAAATA-CTTG--CA-TGTACA-TG-A-CATGCACGAAGTATGCAAG-AAAAGCTTC-TTTT-TNTGCATTTTCA-TC-----TACAT----TA---------TC-TAAATTTTCACTAATATTCTATTGAT-ATAC-AATAAG-TATACTGTAATT-TTGAGCAATGCATGATG--TT-T--AAA-CGT-G-ATTTCA-TTTGTTTCTCAT-----TT-CCCTATACATTAC-TAT-CGGAGGTG--TGCA--C-GGTC-GAGTCCAGC-TA-NAAAATCAC-TCAGGTGTG---AC-AATCACTTTTG
Reference ( family-362 ) : NGGAAGCTTACAAGCATTCAAT-AATACAGATTATTTTAAAA-TT-TG-GATTGACAATATG-CAGTACTTAGCGAA-ACC-TATATATACACTAGTATGCGC--GATG--TTGCGTT-GATGTT--TAT--TTGAAATCAT-A---ATTAGAAGA------AAAACAAAA-TA-T------------TAGTTTGG----GACCT-AACATA--TTCA------AATGTA-A----TCATTGGGA-G-TTTATTGAAGT-GCAA--GATATTC--TAATTANATGTATGAT--ATTCGTTC-------TTA--CTGCTTGTATTTAGAG-AAACGTGCACGTAGCATGTAGCANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAATGAATACACAATATACAN-ATGTGCAT-GCAAGGTGACTGT--AAATAA--TTATGTG----ATTTCCAAAG----AGACAACAA---AT---TT--TGAAAGATGAA-TTTCATTTTCGTTTATATACCGTATATTTTCACCTAG-ATGTA-TACTTCCN-AT----AT-TGTATGTAATCGTATGTACATTTTCAATC-GTATCTGCAATATT-ATAATA-TCATAACAGA-TGT-TCGGTGTCGATAACCAACCA----C--ATACATGCATGATCAGA-T-TCC-TGA-TTTCTGT--AAAC-T-----GCAAA-A--C-TCGGAC--CA--TTCGT---CAA--GCGT------TGTAGGAAAAA-TATTCGACTCTGG-AC-----------AC---CT-------TCC--CTGA-TTG--AAAACAT------A-CTC---ACTG-G-CACGG---GTG--AA---GTGT-G-T-GC---AG----TCTGTA-TAG-T-GGAG-TG-ACAACGT-GT-T--CTG-TCGA-G-ATAC-AAATGGAG----TTTATTA-T-TTTGTTTCTTGGAT--TTAT-CAGAATA--AAG-A-GA-GTC---TAACA------TNTTTGGTA-AG-TGCACAC---CT-C-CGGTC--CCGGTAT-A----------GC---TTTCCGTA-------TTTG---------GT-ACGT----TTTC-TTGGCGAGCATGCGATGT---------GCAT------------TACATATGCA-----CCAGNATTTCGCA-AG-AACT-G--------------ATTGTG----------A-ACAA-TAAGTATTTT-AATGTTCTTTGCTTATTCCATTCTAT--TA-GTA---------TGCTAA--------ACGATTCC-GCCGCGA-------T----------TT---TTTACATGTTACTGACA-TGCTAGTTG-CAAATA-CTTG--CA-TGTACA-TG-A-CATGCACGAAGTATGCAAG-AAAAGCTTC-TTTT-TNTGCATTTTCA-TC-----TACAT----TA---------TC-TAAATTTTCACTAATATTCTATTGAT-ATAC-AATAAG-TATACTGTAATT-TTGAGCAATGCATGATG--TT-T--AAA-CGT-G-ATTTCANTTTGTTTCTCAT-----TT-CCCTATACATTAC-TAT-CGGAGGTG--TGCA--C-GGTC-GAGTCCAGC-TA-NAAAATCAC-TCAGGTGTG---AC-AATCACTTTTG
gi|1 : GGAAGCTTACAAGCATTCAATTAATACAGATTATTTTAAAA-TT-TG-GATTGACAATATG-CAGTACTTAGCGAA-AACGTATATATACACTAGTATATGCATGA-G--TTGCGTTTGATGTT--TAT--TTGAAATCAT-A---ATTAGAAGA------AAAACAATA-GA-T------------TAGTTTTG----GACCT-AATATA--TTCA------AATATAGA----TCATTGAGA-GTTTTATTGAAGT-GCAA--GATATTG--TAATTCTATGTATGAT--ATTCATTC-------TTA--CTGCTTGTATTTAGAGAAAACGTGCACATA-CATGTAGCA
gi|1 : AATATACATTATGTGTAT-GCAA--TGACTGT--AAATAA--TTATGTG----ATTTCCAAAG----AGACGACAAT--AA---TT--TGAAAGGTGAA-TTTCATTTTC-----TATACCGTATATTTTCACCTAG-ATGTAATACTTCCG-ATCATTAT-TGTATGTAACCATATGCACATTTTGAATT-GTATCTGCAATATT-ATAAAA-TCAGAGCAGAATGTGTCAGTGTCGATAACCAAC----------TACATGCATGATCAGA-T-TCCCTGAGTTTCTGT--AAACCT-----GCAAA----C-TCGG-CGACA--TTC------AA--GC--------TGAAGGAAAA--TATTCGACTCTGG-A------------AC---CT-------TCC--CTGA-TTG--AAAACGT------A-CTC---ACTG-G-CACGA----TG--AA---GTGT-G---GC---AG----CCTGTA---G-T-GGAG-TG-ACAAAGT-GG-T----G-TCGACG-ATAC-GAATGGAG----TTTTTT--T-TTTGTTTCTTG-AT--TTAT-CAGAATA--A-G-A-GA-GTC---TAACA------TTTTTGGTA-AG-TGCACAT---CT-C-CGGTC--CCGGTAT-A----------AC---TTTCCGTA-------TTTT---------GT-GCGT----TTTC-TTAGCGAGCATGCGATGTTTTTAGCGAGCATGCGATGTGCATATACATATGCA-----GCAGCATTTCGCA-A--AACT-GAAATTGAAATAATAATTGTG--------------AA-TAAGTATTTT-AATGTTCTTTGCT------AGTGTG---TA-AT----------TGCAAA--------ATGATTTC-ACCG-GA-------TTTTTTTTTTCTT---TTTACATGTTATTGACA-TGATAGTGG-GAAATA-CTTG--CA-TGTACACTGTA-CATGCACGAAGTATGCAAG-AAAAGTTTC-TTTT-TCTGCATTGTCA-TC-----TACAT----TA---------TC-T-AATTTTCACTAATATTCTATTGATGATAC-AATAAGTTATATTGT-ATT-TTGAGCAATGC--------------AAA-CGTGG-ATTTC---------CCC-------TT-CCCTAAACATTAC-TAT-CGGAGGTG--TGCA--CTGGTC-GAGTACAAC-TAGAAAAATCAC-TCAGGTGTG---AC-AATCACTTTTGnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngtttgtcaatgaatatacattatgtgtatgcaatgactgtaaataattatgtgatttccaaagagacgacaataatttgaaaggtgaatttcattttctataccgtatattttcacctagatgtaatacttccgatcattattgtatgtaaccatatgcacattttgaattgtatctgcaatattataaaatcagagcagaatgtgtcagtgtcgataaccaactacatgcatgatcagattccctgagtttctgtaaacctgcaaactcggcgacattcaagctgaaggaaaatattcgactctggaaccttccctgattgaaaacgtactcactggcacgatgaagtgtggcagcctgtagtggagtgacaaagtggtgtcgacgatacgaatggagttttttttttgtttcttgatttatcagaataagagagtctaacatttttggtaagtgcacatctccggtcccggtataactttccgtattttgtgcgttttcttagcgagcatgcgatgtttttagcgagcatgcgatgtgcatatacatatgcagcagcatttcgcaaaactgaaattgaaataataattgtgaataagtattttaatgttctttgctagtgtgtaattgcaaaatgatttcaccggattttttttttctttttacatgttattgacatgatagtgggaaatacttgcatgtacactgtacatgcacgaagtatgcaagaaaagtttctttttctgcattgtcatctacattatctaattttcactaatattctattgatgatacaataagttatattgtattttgagcaatgcaaacgtggatttccccttccctaaacattactatcggaggtgtgcactggtcgagtacaactagaaaaatcactcaggtgtgacaatcacttttgg
gi|10 : ggaagcttacaagcattcaattaatacagattattttaaaatttggattgacaatatgcagtacttagcgaaaacgtatatatacactagtatatgcatgagttgcgtttgatgtttatttgaaatcataattagaagaaaaacaatagattagttttggacctaatatattcaaatatagatcattgagagttttattgaagtgcaagatattgtaattctatgtatgatattcattcttactgcttgtatttagagaaaacgtgcacatacatgtagcannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngtttgtcaatgA-TGTACA-TG-AACATGCACGAAGTATGTAAG-AAAAATTTCCTTTT-TCTGCATTTTCA-TC-----TACAT----TA---------TC-TAAATTTTCACTAATATTCTAT--A----AC-AATAAA-TAT-TTGCGCTTGTTGAGCAATGC--GAGG---------AA-CGT-G-ATTTTATTATGTTTCTCGT-----GTACCCTATACATTACTTAT-CGGA-ATGATTGCAGCT-GGTC-GAGTCCAAG-CA-GAAAATCTCTTCAGATGTGACCAC-AATCACTTTTGg
gi|11 : TTCATAT----TATATTTTCACCCAG-ATTT--TAATTCCT-ATCATTAT-TGTATGTAATCGTGTTTAAAT----AATCTGTA-----AATTTTCATAATATTCA-AACATA-TGT-CCAGT--------------A----C--GTAAATATATGATCAGCTT-TCC-TAA-TCTCTGT--AAA---------CAAATA--A-TTG-----CA--TGCATATACAA--GTG-------TGCAAGAAAAA-gt
gi|12 : ttgcaaaggcgtgaagatccatttaaaaaaataaAAATA-ATTG--CA-TG----------CATATAC-AAGTGTGCAAGAAAAAAC--C-TTTT-CTTAC--TTTCT-TC-----GGAAT----GA---------TC-TTAACTTTCA--AA-A-TCT-----T-ATAC-A--CAG-TATAC-GC--TT-TTAAACAATATATGACG--TTAT--GAATCGT-T-ATTTCAG-TTGTTTATC--------------ATACATTA--TACACGTAGGTG--TACAT-T-GGTC-GAG------------------C-GCAGGTGTG---AC-AAT
gi|13 : ---CT-------CTC--ATGA-TTG--AAGACA---------------GCTG-G----------TT--TA---GTGT-G-TCGC---AG----TTTGTA-TAA-T-GGAG-TT-ACAATAT-AT-TTTCTG-TCGG-A-ATAC-AAATGGAG----TTTATCA-C-CTAATTTGTGGAAT--T--C-CA-AATA--GAGTG-GA-A-----TAACG------CTTCCGGTT-AG-AACACAT---TT-C-aaactctgg
gi|14 : tAGA-TGT-TCGGAGAAGAAAACCAACC-----C-----TATG------CAGA-T-TCC-TGA--TTCTAT--AAAC-T-----GCAAA-A--CACCTGAC--CA-----GT---CAA--GCATTCAA--TCTA-CAAATA-TATTCGACTCAGA-AC-----------A-------------TCC--CTAA-TTGGAAAAAAAT------A-CTT---ACTG-G-CACTG---GTG--AA---ATGT-GTT-GT---AA----TCCGTA-TAA-T-ggcaagaaaaacatttccggttcgctacagttgtcccag
gi|15 : tGAA-TTTCATTTTCCTTTGTAAGCCGTATATTTTCACCTAG-ATGTA-TACTTCCG-AT----AT-TGTATGTAATCATATGTACATTTTCAATC-GTATCTGCAATATT-ATAGTA-TCATAACAGA-TGT-TCAGTGTCGATAACTAACC----------ACATGAATGATCAGA-T-TCC-TGT-TTT
gi|16 : ATTTTAAAAGTT-TG-AATTGGCAATATG-CAGCA------------------TATA---TAG---------GAT---TTGCATT-GATGTT--TATATTTGAAATCAT-G---ATTAGAAGT------AAAACAAAA-TA-T------------TAGTTT-G----GACAC-AAGATG--TGCA------a
gi|17 : AATATATAA-AAGTGCAT-GCAAGGTGAATGT--CAGTAA--TTATGTG----AT------AG----AGACAACAA---AT---TT--CGAGAGATGAA-TTTTATGTTTGCTTATA-ATAGTGTGTTTTTGCCCAATATGT
gi|18 : aATT-TTCAGCAGCACAGGATG--TT-T--TAA-AAT-A-AATGCACGT-GCATCTTACCGGTATT-TCTTATGCATTAC-TGT-TTGAGATG--CACA--C-GATC-
gi|19 : AG-ATGTGCATTGCAAGGTGACTGT--AAATAA--TTATGTG----ATTTCCAAAG----AAACAACAA---AT---TT--TGAAAG
gi|2 : aGAAAGCTTACAAGCATTCAAT-AATACAAATTATTTTAAAA-GTGTG-GATTGACAAAATG-CGGTACTTAGCGAATACC-TATATATACACTAGTATGCAT--GATGAGTTGCTTT-GATCTT--TAT--TTGAAATCATCATGCATTAGAAGA------AAAACATAA-TA-T------------TGTTTTGG----GACCT-AA-ATAAATTCA------TATGTA-A----TCATTGGGA-G-TGTATTGAAGT-GCAA--GATATTC--TAATTATATGTATAAT--ATTCATTC-------TTA--CTACATGTATTTAGAG-AAACGTGCACGTAGCANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAATGAATACACAACACACAT-ATGTGTAT-GCAAGGTGA-TGT--AAATAA--GTATGTG-----TTCCCAAAG----AGACACCGA---ATGCATT--GAAAAGATGAA-TTTCATTTTCGTTTATATACCGTATATTTTCACCAAG-ATGTA-TACTTCCG-AT----AT-TGTATGTAACCATATGTACATTTTGAATT-GTATCTGCAATATT-GTAATA-TCAGAGCAGA-TGT-TCAGTGTCGATAGCCAACTA----CGTATACATGCATGATCAGA-T-TCC-TGA-TTTCTGT--AAAC-T-----GCAAA----C-TCGGAC--CA--TTCATG--CAA--GC--------TGAAGGAAAAA-TATTCGACTCTGG-AC-----------AC---CT-------TCC--CTGA-TTG--AAAACGT------A-CTC---ACTG-G-CATGG---GTG--AA---GTGT-G---AC---AG----TCTGTA-TAG-T-GCAG-TG-ACAAAGT-GT-T--CTG-TCGA-G-ATAC-TTTTGGAG----TTTATTA-T-TTTGTTTCTTGGAT--TTAT-CAGAATA--AAG-A-CA-GTC---TAACA------TATTTGGTA-AG-TGCACAT---CT-C-CGGTC--CCGGTAT-A----------AC---TTTCCGTA-------TTTG---------GT-GCGT----TTTC-TTAGCGAGCATGTGATGT---------GCAT------------TACATATGCA-----TCAGCATTTCGCA-AT-AACT-G--------------ATTGTG----------A-ATAA-TAAGTATTTTAAATGTTCTTTGCTTATTCCATTCTAT--TA-GTG---------TGTTAA--------ATGATTTC-GCCGCGA-------T----------TT---TGTACATGTTATTGACA-TGATAGTGG-CAGATA-CTTG--CA-TGTACA-TGAA-CATGCACGAAGTATGCAAG-AAAAGTTTC-TTTT-TCTGTATTTTCA-TC-----TACAT----TA---------TC-TAAATTTTCACTAATATTCTATCGAT-ATAC-AATAAG-CATATTGTGATT-ATGAGTAATGC--------------AAA-CGT-GAATTTCAATTTTGTTCTCAT-----TT-CCCTATACATTAC-TAT-CGGAGATG--TGCA--T-GGTC-GAGTCCAGC-TA-AAAAATCAC-TCAGGTGTG---AC-AATCACTTTTG
gi|20 : g--C-GGTT-GAGTCTAGA-TA-CAAAGTCAA-TCAGGTGTG---AC-AATC
gi|3 : acAT-A---TTTAGAGGAGTGGGTAAAACAAAAATAAT------------TAGTT-------GACCT-AACAC---TTCAGGATGTAATGTA-ACCACTCATTGAGATG-TCTATGTAAGTTGCAACGAATATACCATAATTAGATGTATGATAAATTCATTC-------TTA--C-----GTA-TTAGTG-ATTTATGCACGTAGCAT
gi|3 : tTGAGCTT-GCA--GTGACTGTTTAAATAAGATGATGTGGGGGAT--CCAAAGGAGGAGACAACAACAAAT---TTCTTGAAAG-TGAAATTTCATTTTCCTTTGTTAACCGTAT---------------GTA-TACTTCCG-AT---------------ATTGTATGT----------TC-ATATATACATTTTT--CAAAA-TCGTATC----TG---CACTATTATTAATTA-TCA----T--A-ACA-G-ATG-TCAGG-TATC---GA-T---------AAC-A-----ACCAA-A--T-TCAG----CG--TTTGT---CAATCGCATCA----TATAGTGAAAA-TCTTCCACT---G-AC------------C---CC-------TC-----GA---G--AAAACATGACCGTA-CTC---ATTG-G-CACGG---A----AA---GTGTAG-C-CC---AG----TTTG-A-TAGCT-GGAG-TG-ACAA-GT-GT-T--CTG-TCGA-G-ATAC-AAATGGAGGTTCTTTATTA-T-TTTGTTCTTTGCAT--TT----------------------------------------TTTGCTA-AGGTGTAGACATGCT-CACGTTTTACCGGTAT-A----------TT---CTTTCGT--------TATG---------GT-ACGT----TTTCTTTGGCGTGCATTACATAT---------GCAT------------T-TTTATGCGACGATCCAGTATTT-GCACCC-AACTAG--------------ACTGTGTTCTGTGGCCATATAATTAAGCATTT---ATGTTCTTTGCTTATTCCAT--TAT--TAGGTATGTAATT--TGCTAA--------ATGATTTT-GCCGCGA-------T----------TTCTATTTACATGTCACTAACA-TGCTAGTTGCCAAATACCTTGGCCATTGTACA-TG---C---CAC---GTATGCAAG-AAAATCTTC-TATT-TTTG----TTGA---------ACAT----T----------TCATAATTTATCACTAATATTctcctttctttaannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncctatcggcctcctctcctcttcgtactccctctcctctcaccttctccttcgtctcctgttttgtcatgtctatgtatacaaagtatgtgctatttgaatggtgagcttgcagtgactgtttaaataagatgatgtgggggatccaaaggaggagacaacaacaaatttcttgaaagtgaaatttcattttcctttgttaaccgtatgtatacttccgatattgtatgttcatatatacatttttcaaaatcgtatctgcactattattaattatcataacagatgtcaggtatcgataacaaccaaattcagcgtttgtcaatcgcatcatatagtgaaaatcttccactgacccctcgagaaaacatgaccgtactcattggcacggaaagtgtagcccagtttgatagctggagtgacaagtgttctgtcgagatacaaatggaggttctttattattttgttctttgcattttttgctaaggtgtagacatgctcacgttttaccggtatattctttcgttatggtacgttttctttggcgtgcattacatatgcatttttatgcgacgatccagtatttgcacccaactagactgtgttctgtggccatataattaagcatttatgttctttgcttattccattattaggtatgtaatttgctaaatgattttgccgcgatttctatttacatgtcactaacatgctagttgccaaataccttggccattgtacatgccacgtatgcaagaaaatcttctatttttgttgaacatttcataatttatcactaatatt
gi|4 : tatatttagaggagtgggtaaaacaaaaataattagttgacctaacacttcaggatgtaatgtaaccactcattgagatgtctatgtaagttgcaacgaatataccataattagatgtatgataaattcattcttacgtattagtgatttatgcacgtagcatctcctttctttaannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncctatcggcctcctctcctcttcgtactccctctcctctcaccttctccttcgtctcctgttttgtcatgtctatgtatacaaagtatgtgctatttgaatgg--AAATAA--TTATGTG----ATT-CCAAAG----AAACAACAA---AT---TT--TGTAAGATGAA-TTTCATTTTGGTTTATATATCGTATATTTTCACCTAG-ATGTA-TAATTCCC-AT----AT-TGTATGTAATCATATGTACATTTTCAATC-GTATCTG-AATAAT-AT-ATA-TCATAATAGA-TGT-TCGGTGTCGATAATTAACC----------ACATGCATGATCAGA-T-TCC-TGA-TTTCTGT--AAAC-T-----GCAAA-A--C-TCGGAC--CA--C---T---CAA--GCATTCAATATATACGAAAAC-TATTCCACTCTGG-AC-----------A----TT-------TCC--CTGA-TTG---AAACAT------A-CTT---A-TG-G-CACGT---GGC--AA---GTGT-G---GC---AG----TCTGTA-TAG-T-GGAG-TG-ACAACGT-GT-T--CTG-TCGA-G-ATAC-AAATGGAG----TTTATTA-T-TTTGTTTCTTGGAT--ATAT-CAGAATA--AAG-A-GA-GTC---TAACA------TA-TTGGTA-AG-TGCACAC---CT-C-C-GTC--CCGGTAT-A----------GC---TTTTCGTATTGCCATTTTA---------GT-ACGT----TT---TTGGCGAGCATGCTATGT---------GCAT------------TACATGTGCA-----CCAGGATTTTGCA-AG-AACT-G--------------ATTGTG------------ACAA-GAAGTATTT---ATGTTCTTTGCTTATTCCATTCTATAGTA-GTAAT-------TGCTAA--------ACGATTCC-GCCGCGA------------------TT---TTTACATGTTAC-GACA-TGCTAGTTG-CAAATA-CTTA--CA-GGT-------A-CATGCAC---GTATGCAAG-AAAAGCTTC-TTTT-TGCGCATTTTCA-TCTAAATTACATATTGTA---------TC-TAAATTTTCAATAATATTTCATTGAT-ATACAAATAAG-TATACGTTAATT-TTGAGCAATGCATGATG--TT-T--AAAGCGT-G-ATTTCA-TTTGTTTCTCAT-----T---CCTATACATTAC-TAT-CGGAGTGG--TGCA--CTGGTC-GAGTTCAGC-TA-CAAAATCAC-TCAGGTGTG---AC-AATCAATTTTG
gi|5 : TGTA-TACTTCCCCAT----ATGTGTA-GTAATT-CATG-ACATTTTCAATC-GTATCTGAATTAAT-ATAATA---ATAATAGA-T-T-TCGTTGTCGATAATTAACCA----C--AT----GCATGATCAGA-T-TCC-TGA-TTTCTGTGAAAAC-------GCAAA-AAAC-TCGGAC--CA--C-CGT---CAA--GCATCA----TATAGGAAAAAATATTCCACTCTG--AC-----------AT----T-------TCC--CTGA-TTG--AAAATAC------AACTCCAAATTTTG-CCCCCCCCGTGGCAA---GT-T-G---GC----G----TCTGTA-TAG-T-GGAGCTG-ACAACGTTGTCT--CTG-T--G-G-ATACCAAATGGAG----TT-ATTA-T-TTGATTTCTTGGAT--ATAT-CAGAATT--AAG-A-GA-GTC---TAACATACATGTATTTGTCA-AG-TGCACAC---CT-C-CGGTC--CCGGAATCA----------GC---TTTTCGTA-------TTTGCCATCTTTAGT-ACGT----TT---TTGGCGAGCATGC-ATGT---------G-A--------------ACATGTGCA-----CCAGGGATTTGCA-AGAAACT-G--------------A-TGTG----------A-
gi|6 : gatT-A----------GC---TTTCCGTT-------TTTG---------GA-ACGT----TTTA-GTGGCGAGCATGCAATGT---------GCAT------------TACATATGCA-----CCAGTATTTTACA-AG-AAAT-G--------------ATTGTG----------A-ACAA-TAAGTATGTT-TATGTTCTTTGCTTATTCCATTCAAT--TA-GTATATGTAACTTGCTAA--------ATGATCCC-ATCGCGATATTTTTT----------TT---TTTACATGTTACTGACA-TGCTAGTTG-CAATTA-C-TG--CA-TGT-------A-CACGCAC---GTATGCAAG-AAAAGCTTC--TTT-TGTGCA-----A-TC--------------TA---------TC-TAAATTACCACTAATATTCTATTTAT-ATAC-AATACG-TATACTGTAATT-TTGAGCAATACATACTG--TT-TTAAAA-CGT-G-ATTTCA-TTTGTTTCTCA------TT-CCCTATGCATTAC-TAT-CGGAGGTG--TGCA--C-GGTC-GAGTTCAGC-TA--AAAATCAC-TCGGGTGTG---AC-AATTACTTTTG
gi|7 : CAACCATGGTC--ACACGTGTAAAATCGGA-T-TCC-TGA-TT-CTGT--AAAC-CTCTTGGCATA-A--G-TC--ACG-CAATTTCAT----AA-----T------TGTAGGAAA---T-TCCGACTCTGGTACGTGATTGAAAAACTCGCTATGTTAGTCCTGCTGAATTG--AAAACATT-----G-CTC---ATTG-GGCACGA---G-G--AACAAGTGT-G-T-GCTCCAGATACCCTGGAGTAT-TCGGAG-TGTACA-TGT-TT-T--CTGCTCGA-GTATAC-AAATGAGA----TTTATTAATATTTGTTTCTTGGATATTCATACAGAATATAAAG-ATGACGTTAGATAACACTA---TTTCTGGTATAG-TGCACAC---CTTC-CGGTC--CCGGTAT-ATCTGAAAAATGCTTGTTCCCGTATG-----TTTG---------GTGACGCGTAATTTT-TTGGCGAGCAggg
gi|8 : aTCTAT--TA-GTA---------TGTTAATTGCTTAAACGATTCCCGCCTCGA-------T----------TT---ATTACATGTTAC-GACAATGC-AGTTG-CAAATA-CTTA--CA-GTTACA-------ATGC-CGA----TGCAAG-AAAGGCTTC-TTTTATGCGCATTTTCAATC-----TAAAT----TACATATTGAATC-TAAATT--CACTAATATTCTATTGAT-ATAC-AATAAG-TATACTGTAATT-TTGAG-AATGCATGATGTTTT-T--AAA-CGT-G-ATTTCATTTTG-TTCTC-------TT-CCCTATAC-TTAC-TTT-CGGAGGTG--T-CA--C-TGTCGGAGGTCAGCTTA-CAAAATCAC-TCAG--GTG---ACGAATCACTTTTG
gi|9 : AACTTACAAGCATTCAAA-AATGTCGCTTAATTTGATA-TT-TTCAATTGATAATATGGCAGTAAGT-GCGAA-ACC-TATATATACA-------------GACG--CTGTATC-GGTGTTAATAT--TTAAACTCAC-C---ATTAGA-GA------AAAACAAAA-TA-TATTTAGTATATTTGGTTTGGTCTAGACTTTAACATA--TCAA------AATGTA-AA---TCATAGGGA-G-TTTATTGAAGT-GCAA--GGTATTC--AAATTAACTATACAACA-ATTTGTTCACCGGATTTAAGCTGCTT-TGTTTAga
Alignments
lowQualScore : 1 1 1 1 1 1111 11111 555555555555555 1 11 11 22222 222222 444444444444 2222222 111 222222 333333 1 1 1 11 11 111 3333333 11 1 777777777777777777777777777777777777777777777777777777777777777777777777 11 22222222 1111 111 111 2222 33333333333 2222222 111111 1111 55555555555555555555555 5555555555555555555555555 22222222 222222222 222 1111 1111 1111111 1111111 222222 111 222222222222222 22222222 222222222 1111 111 3333333333333333333333333 11111 1111 33333333333333 444444444444 222 5555555555 22222222 555555555555555555 111 333333333 222 111111 222222222222222 33333333333333 1 3333333333 1111 11
lowQualScore : 3 0 0 0 0 8888 55555 2 8 999999999999999 4 0 33 33 00000 3 333333 8 8 111111111111 2222222 8 8 444 333333 222222 0 0 0 0 33 33 1 666 2 2222222 33 33 3 2 3 3 6 222222222222222222222222222222222222222222222222222222222222222222222222 11 8 55 5 99 99 11111111 4444 888 111 99 3 6 6 55 0 2 5 5 66 4444 5 1 6 0 1 4 5 4 55 5 4 5 5 88888888888 7 4 4 4 4 66 2222222 888888 1111 11111111111111111111111 1 888 1 0 5 4444444444444444444444444 66 5 66 00000000 888 2 5 5 666666666 888 5 777 888 0000 0 5 5 5 5 5 8 5 5 77 5 5 5 5 2222 5 5 3 0000000 0 77 1 888 2222222 666666 3 5 5 000 5 5 99 5 555555555555555 88888888 222222222 5 2222 333 9 9999999999999999999999999 66666 1 6 5555 6 99999999999999 1 333333333333 1 8 444 0 99 6 9999999999 44444444 0 6 000000000000000000 111 7 6 6 5 77 5 777777777 111 5 5 5 1 33 5 555555 111111111111111 5 0 3 44 5 5 5 1 9 5 00000000000000 0 555 77777 5 3333333333 5 5 66 0 4444 4 22 5 22 5 888 5
lowQualScore : . . . . . .... ..... . . ............... . . .. .. ..... . ...... . . ............ ....... . . ... ...... ...... . . . . .. .. . ... . ....... .. .. . . . . . ........................................................................ .. . .. . .. .. ........ .... ... ... .. . . . .. . . . . .. .... . . . . . . . . .. . . . . ........... . . . . . .. ....... ...... .... ....................... . ... . . . ......................... .. . .. ........ ... . . . ......... ... . ... ... .... . . . . . . . . . .. . . . . .... . . . ....... . .. . ... ....... ...... . . . ... . . .. . ............... ........ ......... . .... ... . ......................... ..... . . .... . .............. . ............ . . ... . .. . .......... ........ . . .................. ... . . . . .. . ......... ... . . . . .. . ...... ............... . . . .. . . . . . . .............. . ... ..... . .......... . . .. . .... . .. . .. . ... .
lowQualScore : 3 0 0 0 0 0000 88888 5 8 222222222222222 2 0 88 88 88888 8 000000 0 0 000000000000 8888888 0 2 888 000000 222222 0 0 8 0 88 88 0 555 0 5555555 88 55 5 5 2 3 7 000000000000000000000000000000000000000000000000000000000000000000000000 00 0 88 0 22 22 33333333 2222 333 777 22 8 7 7 66 1 4 7 7 44 3333 7 4 3 1 4 3 7 3 99 7 9 0 0 00000000000 4 4 4 4 4 99 8888888 444444 2222 55555555555555555555555 4 555 4 7 7 0000000000000000000000000 99 0 99 22222222 888 2 0 0 000000000 888 0 444 888 6666 1 0 0 0 7 7 9 7 7 99 7 7 7 7 1111 7 7 0 1111111 7 99 4 000 4444444 444444 0 7 7 000 7 7 22 7 444444444444444 11111111 999999999 7 1111 777 3 3333333333333333333333333 77777 0 3 0000 7 22222222222222 7 222222222222 4 0 444 8 22 7 2222222222 22222222 7 7 000000000000000000 777 3 7 7 7 99 0 444444444 111 0 0 0 0 22 0 666666 888888888888888 0 4 6 33 7 7 7 4 3 0 66666666666666 0 111 88888 0 9999999999 0 0 99 2 8888 4 44 0 66 0 888 0
consensus : NGGAAGCTTACAAGCATTCAAT-AATACAGATTATTTTAAAA-TT-TG-GATTGACAATATG-CAGTACTTAGCGAA-ACC-TATATATACACTAGTATGCGC--GATG--TTGCGTT-GATGTT--TAT--TTGAAATCAT-A---ATTAGAAGA------AAAACAAAA-TA-T------------TAGTTTGG----GACCT-AACATA--TTCA------AATGTA-A----TCATTGGGA-G-TTTATTGAAGT-GCAA--GATATTC--TAATTANATGTATGAT-AATTCGTTC-------TTA--CTGCTTGTATTTAGAG-AAACGTGCACGTAGCATGTAGCANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAATGAATACACAATATACAN-ATGTGCAT-GCAAGGTGACTGT--AAATAA--TTATGTG----ATTTCCAAAG----AGACAACAA---AT---TT--TGAAAGATGAA-TTTCATTTTCGTTTATATACCGTATATTTTCACCTAG-ATGTA-TACTTCCG-AT----AT-TGTATGTAATCGTATGTACATTTTCAATC-GTATCTGCAATATT-ATAATA-TCATAACAGA-TGT-TCGGTGTCGATAACCAACCA----C--ATACATGCATGATCAGA-T-TCC-TGA-TTTCTGT--AAAC-T-----GCAAA-A--C-TCGGAC--CATTCGT---CAA--GCATT-----TGTAGGAAAAA-TATTCGACTCTGG-AC-----------AC---CT-------TCC--CTGA-TTG--AAAACAT------A-CTC---ACTG-G-CACGG---GTG--AA---GTGT-G-T-GC---AG----TCTGTA-TAG-T-GGAG-TG-ACAACGT-GT-T--CTG-TCGA-G-ATAC-AAATGGAG----TTTATTA-T-TTTGTTTCTTGGAT--TTAT-CAGAATA--AAG-A-GA-GTC---TAACA------TNTTTGGTA-AG-TGCACAC---CT-C-CGGTC--CCGGTAT-A----------GC---TTTCCGTA-------TTTG---------GT-ACGT----TTTC-TTGGCGAGCATGCGATGT---------GCAT------------TACATATGCA-----CCAGNATTTCGCA-AG-AACT-G--------------ATTGTG----------A-ACAA-TAAGTATTTT-AATGTTCTTTGCTTATTCCATTCTAT--TA-GTA---------TGCTAA--------ACGATTCC-GCCGCGA-------T----------TT---TTTACATGTTACTGACA-TGCTAGTTG-CAAATA-CTTG--CA-TGTACA-TG-A-CATGCACGAAGTATGCAAG-AAAAGCTTC-TTTT-TNTGCATTTTCA-TC-----TACAT----TA---------TC-TAAATTTTCACTAATATTCTATTGAT-ATAC-AATAAG-TATACTGTAATT-TTGAGCAATGCATGATG--TT-T--AAA-CGT-G-ATTTCA--TT-TGTTTCTCAT-----TT-CCCTATACATTAC-TAT-CGGAGGTG--TGCA--C-GGTC-GAGTCCAGC-TA-NAAAATCAC-TCAGGTGTG---AC-AATCACTTTTG
Reference ( family-362 ) : NGGAAGCTTACAAGCATTCAAT-AATACAGATTATTTTAAAA-TT-TG-GATTGACAATATG-CAGTACTTAGCGAA-ACC-TATATATACACTAGTATGCGC--GATG--TTGCGTT-GATGTT--TAT--TTGAAATCAT-A---ATTAGAAGA------AAAACAAAA-TA-T------------TAGTTTGG----GACCT-AACATA--TTCA------AATGTA-A----TCATTGGGA-G-TTTATTGAAGT-GCAA--GATATTC--TAATTANATGTATGAT-AATTCGTTC-------TTA--CTGCTTGTATTTAGAG-AAACGTGCACGTAGCATGTAGCANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAATGAATACACAATATACAN-ATGTGCAT-GCAAGGTGACTGT--AAATAA--TTATGTG----ATTTCCAAAG----AGACAACAA---AT---TT--TGAAAGATGAA-TTTCATTTTCGTTTATATACCGTATATTTTCACCTAG-ATGTA-TACTTCCG-AT----AT-TGTATGTAATCGTATGTACATTTTCAATC-GTATCTGCAATATT-ATAATA-TCATAACAGA-TGT-TCGGTGTCGATAACCAACCA----C--ATACATGCATGATCAGA-T-TCC-TGA-TTTCTGT--AAAC-T-----GCAAA-A--C-TCGGAC--CATTCGT---CAA--GCATC-----TGTAGGAAAAA-TATTCGACTCTGG-AC-----------AC---CT-------TCC--CTGA-TTG--AAAACAT------A-CTC---ACTG-G-CACGG---GTG--AA---GTGT-G-T-GC---AG----TCTGTA-TAG-T-GGAG-TG-ACAACGT-GT-T--CTG-TCGA-G-ATAC-AAATGGAG----TTTATTA-T-TTTGTTTCTTGGAT--TTAT-CAGAATA--AAG-A-GA-GTC---TAACA------TNTTTGGTA-AG-TGCACAC---CT-C-CGGTC--CCGGTAT-A----------GC---TTTCCGTA-------TTTG---------GT-ACGT----TTTC-TTGGCGAGCATGCGATGT---------GCAT------------TACATATGCA-----CCAGNATTTCGCA-AG-AACT-G--------------ATTGTG----------A-ACAA-TAAGTATTTT-AATGTTCTTTGCTTATTCCATTCTAT--TA-GTA---------TGCTAA--------ACGATTCC-GCCGCGA-------T----------TT---TTTACATGTTACTGACA-TGCTAGTTG-CAAATA-CTTG--CA-TGTACA-TG-A-CATGCACGAAGTATGCAAG-AAAAGCTTC-TTTT-TNTGCATTTTCA-TC-----TACAT----TA---------TC-TAAATTTTCACTAATATTCTATTGAT-ATAC-AATAAG-TATACTGTAATT-TTGAGCAATGCATGATG--TT-T--AAA-CGT-G-ATTTCA--TT-TGTTTCTCAT-----TT-CCCTATACATTAC-TAT-CGGAGGTG--TGCA--C-GGTC-GAGTCCAGC-TA-NAAAATCAC-TCAGGTGTG---AC-AATCACTTTTG
gi|1 : GGAAGCTTACAAGCATTCAATTAATACAGATTATTTTAAAA-TT-TG-GATTGACAATATG-CAGTACTTAGCGAA-AACGTATATATACACTAGTATATGCATGA-G--TTGCGTTTGATGTT--TAT--TTGAAATCAT-A---ATTAGAAGA------AAAACAATA-GA-T------------TAGTTTTG----GACCT-AATATA--TTCA------AATATAGA----TCATTGAGA-GTTTTATTGAAGT-GCAA--GATATTG--TAATTCTATGTATGAT--ATTCATTC-------TTA--CTGCTTGTATTTAGAGAAAACGTGCACATA-CATGTAGCA
gi|1 : AATATACATTATGTGTAT-GCAA--TGACTGT--AAATAA--TTATGTG----ATTTCCAAAG----AGACGACAAT--AA---TT--TGAAAGGTGAA-TTTCATTTTC-----TATACCGTATATTTTCACCTAG-ATGTAATACTTCCG-ATCATTAT-TGTATGTAACCATATGCACATTTTGAATT-GTATCTGCAATATT-ATAAAA-TCAGAGCAGAATGTGTCAGTGTCGATAACCAAC----------TACATGCATGATCAGA-T-TCCCTGAGTTTCTGT--AAACCT-----GCAAA----C-TCGG-CGACATTC------AA--GC--------TGAAGGAAAA--TATTCGACTCTGG-A------------AC---CT-------TCC--CTGA-TTG--AAAACGT------A-CTC---ACTG-G-CACGA----TG--AA---GTGT-G---GC---AG----CCTGTA---G-T-GGAG-TG-ACAAAGT-GG-T----G-TCGACG-ATAC-GAATGGAG----TTTTTT--T-TTTGTTTCTTG-AT--TTAT-CAGAATA--A-G-A-GA-GTC---TAACA------TTTTTGGTA-AG-TGCACAT---CT-C-CGGTC--CCGGTAT-A----------AC---TTTCCGTA-------TTTT---------GT-GCGT----TTTC-TTAGCGAGCATGCGATGTTTTTAGCGAGCATGCGATGTGCATATACATATGCA-----GCAGCATTTCGCA-A--AACT-GAAATTGAAATAATAATTGTG--------------AA-TAAGTATTTT-AATGTTCTTTGCT------AGTGTG---TA-AT----------TGCAAA--------ATGATTTC-ACCG-GA-------TTTTTTTTTTCTT---TTTACATGTTATTGACA-TGATAGTGG-GAAATA-CTTG--CA-TGTACACTGTA-CATGCACGAAGTATGCAAG-AAAAGTTTC-TTTT-TCTGCATTGTCA-TC-----TACAT----TA---------TC-T-AATTTTCACTAATATTCTATTGATGATAC-AATAAGTTATATTGT-ATT-TTGAGCAATGC--------------AAA-CGTGG-ATTTC-----------CCC-------TT-CCCTAAACATTAC-TAT-CGGAGGTG--TGCA--CTGGTC-GAGTACAAC-TAGAAAAATCAC-TCAGGTGTG---AC-AATCACTTTTGnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngtttgtcaatgaatatacattatgtgtatgcaatgactgtaaataattatgtgatttccaaagagacgacaataatttgaaaggtgaatttcattttctataccgtatattttcacctagatgtaatacttccgatcattattgtatgtaaccatatgcacattttgaattgtatctgcaatattataaaatcagagcagaatgtgtcagtgtcgataaccaactacatgcatgatcagattccctgagtttctgtaaacctgcaaactcggcgacattcaagctgaaggaaaatattcgactctggaaccttccctgattgaaaacgtactcactggcacgatgaagtgtggcagcctgtagtggagtgacaaagtggtgtcgacgatacgaatggagttttttttttgtttcttgatttatcagaataagagagtctaacatttttggtaagtgcacatctccggtcccggtataactttccgtattttgtgcgttttcttagcgagcatgcgatgtttttagcgagcatgcgatgtgcatatacatatgcagcagcatttcgcaaaactgaaattgaaataataattgtgaataagtattttaatgttctttgctagtgtgtaattgcaaaatgatttcaccggattttttttttctttttacatgttattgacatgatagtgggaaatacttgcatgtacactgtacatgcacgaagtatgcaagaaaagtttctttttctgcattgtcatctacattatctaattttcactaatattctattgatgatacaataagttatattgtattttgagcaatgcaaacgtggatttccccttccctaaacattactatcggaggtgtgcactggtcgagtacaactagaaaaatcactcaggtgtgacaatcacttttgg
gi|10 : ggaagcttacaagcattcaattaatacagattattttaaaatttggattgacaatatgcagtacttagcgaaaacgtatatatacactagtatatgcatgagttgcgtttgatgtttatttgaaatcataattagaagaaaaacaatagattagttttggacctaatatattcaaatatagatcattgagagttttattgaagtgcaagatattgtaattctatgtatgatattcattcttactgcttgtatttagagaaaacgtgcacatacatgtagcannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngtttgtcaatgA-TGTACA-TG-AACATGCACGAAGTATGTAAG-AAAAATTTCCTTTT-TCTGCATTTTCA-TC-----TACAT----TA---------TC-TAAATTTTCACTAATATTCTAT--A----AC-AATAAA-TAT-TTGCGCTTGTTGAGCAATGC--GAGG---------AA-CGT-G-ATTTTA--TTATGTTTCTCGT-----GTACCCTATACATTACTTAT-CGGA-ATGATTGCAGCT-GGTC-GAGTCCAAG-CA-GAAAATCTCTTCAGATGTGACCAC-AATCACTTTTGg
gi|11 : TTCATAT----TATATTTTCACCCAG-ATTT--TAATTCCT-ATCATTAT-TGTATGTAATCGTGTTTAAAT----AATCTGTA-----AATTTTCATAATATTCA-AACATA-TGT-CCAGT--------------A----C--GTAAATATATGATCAGCTT-TCC-TAA-TCTCTGT--AAA---------CAAATA--A-TTG-----CATGCATATACAA--G--TG-----TGCAAGAAAAA-gt
gi|12 : ttgcaaaggcgtgaagatccatttaaaaaaataaAAATA-ATTG--CA-TG----------CATATAC-AAGTGTGCAAGAAAAAAC--C-TTTT-CTTAC--TTTCT-TC-----GGAAT----GA---------TC-TTAACTTTCA--AA-A-TCT-----T-ATAC-A--CAG-TATAC-GC--TT-TTAAACAATATATGACG--TTAT--GAATCGT-T-ATTTCA--GT-TGTTTATC--------------ATACATTA--TACACGTAGGTG--TACAT-T-GGTC-GAG------------------C-GCAGGTGTG---AC-AAT
gi|13 : ---CT-------CTC--ATGA-TTG--AAGACA---------------GCTG-G----------TT--TA---GTGT-G-TCGC---AG----TTTGTA-TAA-T-GGAG-TT-ACAATAT-AT-TTTCTG-TCGG-A-ATAC-AAATGGAG----TTTATCA-C-CTAATTTGTGGAAT--T--C-CA-AATA--GAGTG-GA-A-----TAACG------CTTCCGGTT-AG-AACACAT---TT-C-aaactctgg
gi|14 : tAGA-TGT-TCGGAGAAGAAAACCAACC-----C-----TATG------CAGA-T-TCC-TGA--TTCTAT--AAAC-T-----GCAAA-A--CACCTGAC--CA---GT---CAA--GCATTCAA--TCTA-CAAATA-TATTCGACTCAGA-AC-----------A-------------TCC--CTAA-TTGGAAAAAAAT------A-CTT---ACTG-G-CACTG---GTG--AA---ATGT-GTT-GT---AA----TCCGTA-TAA-T-ggcaagaaaaacatttccggttcgctacagttgtcccag
gi|15 : tGAA-TTTCATTTTCCTTTGTAAGCCGTATATTTTCACCTAG-ATGTA-TACTTCCG-AT----AT-TGTATGTAATCATATGTACATTTTCAATC-GTATCTGCAATATT-ATAGTA-TCATAACAGA-TGT-TCAGTGTCGATAACTAACC----------ACATGAATGATCAGA-T-TCC-TGT-TTT
gi|16 : ATTTTAAAAGTT-TG-AATTGGCAATATG-CAGCA------------------TATA---TAG---------GAT---TTGCATT-GATGTT--TATATTTGAAATCAT-G---ATTAGAAGT------AAAACAAAA-TA-T------------TAGTTT-G----GACAC-AAGATG--TGCA------a
gi|17 : AATATATAA-AAGTGCAT-GCAAGGTGAATGT--CAGTAA--TTATGTG----AT------AG----AGACAACAA---AT---TT--CGAGAGATGAA-TTTTATGTTTGCTTATA-ATAGTGTGTTTTTGCCCAATATGT
gi|18 : aATT-TTCAGCAGCACAGGATG--TT-T--TAA-AAT-A-AATGCA--CG-TGCATCTTACCGGTATT-TCTTATGCATTAC-TGT-TTGAGATG--CACA--C-GATC-
gi|19 : AG-ATGTGCATTGCAAGGTGACTGT--AAATAA--TTATGTG----ATTTCCAAAG----AAACAACAA---AT---TT--TGAAAG
gi|2 : aGAAAGCTTACAAGCATTCAAT-AATACAAATTATTTTAAAA-GTGTG-GATTGACAAAATG-CGGTACTTAGCGAATACC-TATATATACACTAGTATGCAT--GATGAGTTGCTTT-GATCTT--TAT--TTGAAATCATCATGCATTAGAAGA------AAAACATAA-TA-T------------TGTTTTGG----GACCT-AA-ATAAATTCA------TATGTA-A----TCATTGGGA-G-TGTATTGAAGT-GCAA--GATATTC--TAATTATATGTATAAT-A-TTCATTC-------TTA--CTACATGTATTTAGAG-AAACGTGCACGTAGCANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAATGAATACACAACACACAT-ATGTGTAT-GCAAGGTGA-TGT--AAATAA--GTATGTG-----TTCCCAAAG----AGACACCGA---ATGCATT--GAAAAGATGAA-TTTCATTTTCGTTTATATACCGTATATTTTCACCAAG-ATGTA-TACTTCCG-AT----AT-TGTATGTAACCATATGTACATTTTGAATT-GTATCTGCAATATT-GTAATA-TCAGAGCAGA-TGT-TCAGTGTCGATAGCCAACTA----CGTATACATGCATGATCAGA-T-TCC-TGA-TTTCTGT--AAAC-T-----GCAAA----C-TCGGAC--CATTCATG--CAA--GC--------TGAAGGAAAAA-TATTCGACTCTGG-AC-----------AC---CT-------TCC--CTGA-TTG--AAAACGT------A-CTC---ACTG-G-CATGG---GTG--AA---GTGT-G---AC---AG----TCTGTA-TAG-T-GCAG-TG-ACAAAGT-GT-T--CTG-TCGA-G-ATAC-TTTTGGAG----TTTATTA-T-TTTGTTTCTTGGAT--TTAT-CAGAATA--AAG-A-CA-GTC---TAACA------TATTTGGTA-AG-TGCACAT---CT-C-CGGTC--CCGGTAT-A----------AC---TTTCCGTA-------TTTG---------GT-GCGT----TTTC-TTAGCGAGCATGTGATGT---------GCAT------------TACATATGCA-----TCAGCATTTCGCA-AT-AACT-G--------------ATTGTG----------A-ATAA-TAAGTATTTTAAATGTTCTTTGCTTATTCCATTCTAT--TA-GTG---------TGTTAA--------ATGATTTC-GCCGCGA-------T----------TT---TGTACATGTTATTGACA-TGATAGTGG-CAGATA-CTTG--CA-TGTACA-TGAA-CATGCACGAAGTATGCAAG-AAAAGTTTC-TTTT-TCTGTATTTTCA-TC-----TACAT----TA---------TC-TAAATTTTCACTAATATTCTATCGAT-ATAC-AATAAG-CATATTGTGATT-ATGAGTAATGC--------------AAA-CGT-GAATTTCAATTT-TG-TTCTCAT-----TT-CCCTATACATTAC-TAT-CGGAGATG--TGCA--T-GGTC-GAGTCCAGC-TA-AAAAATCAC-TCAGGTGTG---AC-AATCACTTTTG
gi|20 : g--C-GGTT-GAGTCTAGA-TA-CAAAGTCAA-TCAGGTGTG---AC-AATC
gi|3 : acAT-A---TTTAGAGGAGTGGGTAAAACAAAAATAAT------------TAGTT-------GACCT-AACAC---TTCAGGATGTAATGTA-ACCACTCATTGAGATG-TCTATGTAAGTTGCAACGAATATACCATAATTAGATGTATGATAAATTCATTC-------TTA--C-----GTA-TTAGTG-ATTTATGCACGTAGCAT
gi|3 : tTGAGCTT-GCA--GTGACTGTTTAAATAAGATGATGTGGGGGAT--CCAAAGGAGGAGACAACAACAAAT---TTCTTGAAAG-TGAAATTTCATTTTCCTTTGTTAACCGTAT---------------GTA-TACTTCCG-AT---------------ATTGTATGT----------TC-ATATATACATTTTT--CAAAA-TCGTATC----TG---CACTATTATTAATTA-TCA----T--A-ACA-G-ATG-TCAGG-TATC---GA-T---------AAC-A-----ACCAA-A--T-TCAG----CGTTTGT---CAATCGCATCA----TATAGTGAAAA-TCTTCCACT---G-AC------------C---CC-------TC-----GA---G--AAAACATGACCGTA-CTC---ATTG-G-CACGG---A----AA---GTGTAG-C-CC---AG----TTTG-A-TAGCT-GGAG-TG-ACAA-GT-GT-T--CTG-TCGA-G-ATAC-AAATGGAGGTTCTTTATTA-T-TTTGTTCTTTGCAT--TT----------------------------------------TTTGCTA-AGGTGTAGACATGCT-CACGTTTTACCGGTAT-A----------TT---CTTTCGT--------TATG---------GT-ACGT----TTTCTTTGGCGTGCATTACATAT---------GCAT------------T-TTTATGCGACGATCCAGTATTT-GCACCC-AACTAG--------------ACTGTGTTCTGTGGCCATATAATTAAGCATTT---ATGTTCTTTGCTTATTCCAT--TAT--TAGGTATGTAATT--TGCTAA--------ATGATTTT-GCCGCGA-------T----------TTCTATTTACATGTCACTAACA-TGCTAGTTGCCAAATACCTTGGCCATTGTACA-TG---C---CAC---GTATGCAAG-AAAATCTTC-TATT-TTTG----TTGA---------ACAT----T----------TCATAATTTATCACTAATATTctcctttctttaannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncctatcggcctcctctcctcttcgtactccctctcctctcaccttctccttcgtctcctgttttgtcatgtctatgtatacaaagtatgtgctatttgaatggtgagcttgcagtgactgtttaaataagatgatgtgggggatccaaaggaggagacaacaacaaatttcttgaaagtgaaatttcattttcctttgttaaccgtatgtatacttccgatattgtatgttcatatatacatttttcaaaatcgtatctgcactattattaattatcataacagatgtcaggtatcgataacaaccaaattcagcgtttgtcaatcgcatcatatagtgaaaatcttccactgacccctcgagaaaacatgaccgtactcattggcacggaaagtgtagcccagtttgatagctggagtgacaagtgttctgtcgagatacaaatggaggttctttattattttgttctttgcattttttgctaaggtgtagacatgctcacgttttaccggtatattctttcgttatggtacgttttctttggcgtgcattacatatgcatttttatgcgacgatccagtatttgcacccaactagactgtgttctgtggccatataattaagcatttatgttctttgcttattccattattaggtatgtaatttgctaaatgattttgccgcgatttctatttacatgtcactaacatgctagttgccaaataccttggccattgtacatgccacgtatgcaagaaaatcttctatttttgttgaacatttcataatttatcactaatatt
gi|4 : tatatttagaggagtgggtaaaacaaaaataattagttgacctaacacttcaggatgtaatgtaaccactcattgagatgtctatgtaagttgcaacgaatataccataattagatgtatgataaattcattcttacgtattagtgatttatgcacgtagcatctcctttctttaannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncctatcggcctcctctcctcttcgtactccctctcctctcaccttctccttcgtctcctgttttgtcatgtctatgtatacaaagtatgtgctatttgaatgg--AAATAA--TTATGTG----ATT-CCAAAG----AAACAACAA---AT---TT--TGTAAGATGAA-TTTCATTTTGGTTTATATATCGTATATTTTCACCTAG-ATGTA-TAATTCCC-AT----AT-TGTATGTAATCATATGTACATTTTCAATC-GTATCTG-AATAAT-AT-ATA-TCATAATAGA-TGT-TCGGTGTCGATAATTAACC----------ACATGCATGATCAGA-T-TCC-TGA-TTTCTGT--AAAC-T-----GCAAA-A--C-TCGGAC--CAC---T---CAA--GCATTCAATATATACGAAAAC-TATTCCACTCTGG-AC-----------A----TT-------TCC--CTGA-TTG---AAACAT------A-CTT---A-TG-G-CACGT---GGC--AA---GTGT-G---GC---AG----TCTGTA-TAG-T-GGAG-TG-ACAACGT-GT-T--CTG-TCGA-G-ATAC-AAATGGAG----TTTATTA-T-TTTGTTTCTTGGAT--ATAT-CAGAATA--AAG-A-GA-GTC---TAACA------TA-TTGGTA-AG-TGCACAC---CT-C-C-GTC--CCGGTAT-A----------GC---TTTTCGTATTGCCATTTTA---------GT-ACGT----TT---TTGGCGAGCATGCTATGT---------GCAT------------TACATGTGCA-----CCAGGATTTTGCA-AG-AACT-G--------------ATTGTG------------ACAA-GAAGTATTT---ATGTTCTTTGCTTATTCCATTCTATAGTA-GTAAT-------TGCTAA--------ACGATTCC-GCCGCGA------------------TT---TTTACATGTTAC-GACA-TGCTAGTTG-CAAATA-CTTA--CA-GGT-------A-CATGCAC---GTATGCAAG-AAAAGCTTC-TTTT-TGCGCATTTTCA-TCTAAATTACATATTGTA---------TC-TAAATTTTCAATAATATTTCATTGAT-ATACAAATAAG-TATACGTTAATT-TTGAGCAATGCATGATG--TT-T--AAAGCGT-G-ATTTCA--TT-TGTTTCTCAT-----T---CCTATACATTAC-TAT-CGGAGTGG--TGCA--CTGGTC-GAGTTCAGC-TA-CAAAATCAC-TCAGGTGTG---AC-AATCAATTTTG
gi|5 : TGTA-TACTTCCCCAT----ATGTGTA-GTAATT-CATG-ACATTTTCAATC-GTATCTGAATTAAT-ATAATA---ATAATAGA-T-T-TCGTTGTCGATAATTAACCA----C--AT----GCATGATCAGA-T-TCC-TGA-TTTCTGTGAAAAC-------GCAAA-AAAC-TCGGAC--CAC-CGT---CAA--GCATCA----TATAGGAAAAAATATTCCACTCTG--AC-----------AT----T-------TCC--CTGA-TTG--AAAATAC------AACTCCAAATTTTG-CCCCCCCCGTGGCAA---GT-T-G---GC----G----TCTGTA-TAG-T-GGAGCTG-ACAACGTTGTCT--CTG-T--G-G-ATACCAAATGGAG----TT-ATTA-T-TTGATTTCTTGGAT--ATAT-CAGAATT--AAG-A-GA-GTC---TAACATACATGTATTTGTCA-AG-TGCACAC---CT-C-CGGTC--CCGGAATCA----------GC---TTTTCGTA-------TTTGCCATCTTTAGT-ACGT----TT---TTGGCGAGCATGC-ATGT---------G-A--------------ACATGTGCA-----CCAGGGATTTGCA-AGAAACT-G--------------A-TGTG----------A-
gi|6 : gatT-A----------GC---TTTCCGTT-------TTTG---------GA-ACGT----TTTA-GTGGCGAGCATGCAATGT---------GCAT------------TACATATGCA-----CCAGTATTTTACA-AG-AAAT-G--------------ATTGTG----------A-ACAA-TAAGTATGTT-TATGTTCTTTGCTTATTCCATTCAAT--TA-GTATATGTAACTTGCTAA--------ATGATCCC-ATCGCGATATTTTTT----------TT---TTTACATGTTACTGACA-TGCTAGTTG-CAATTA-C-TG--CA-TGT-------A-CACGCAC---GTATGCAAG-AAAAGCTTC--TTT-TGTGCA-----A-TC--------------TA---------TC-TAAATTACCACTAATATTCTATTTAT-ATAC-AATACG-TATACTGTAATT-TTGAGCAATACATACTG--TT-TTAAAA-CGT-G-ATTTCA--TT-TGTTTCTCA------TT-CCCTATGCATTAC-TAT-CGGAGGTG--TGCA--C-GGTC-GAGTTCAGC-TA--AAAATCAC-TCGGGTGTG---AC-AATTACTTTTG
gi|7 : CAACCATGGTC--ACACGTGTAAAATCGGA-T-TCC-TGA-TT-CTGT--AAAC-CTCTTGGCATA-A--G-TCACGC--AATT--T---CA----TAAT-----TGTAGGAAA---T-TCCGACTCTGGTACGTGATTGAAAAACTCGCTATGTTAGTCCTGCTGAATTG--AAAACATT-----G-CTC---ATTG-GGCACGA---G-G--AACAAGTGT-G-T-GCTCCAGATACCCTGGAGTAT-TCGGAG-TGTACA-TGT-TT-T--CTGCTCGA-GTATAC-AAATGAGA----TTTATTAATATTTGTTTCTTGGATATTCATACAGAATATAAAG-ATGACGTTAGATAACACTA---TTTCTGGTATAG-TGCACAC---CTTC-CGGTC--CCGGTAT-ATCTGAAAAATGCTTGTTCCCGTATG-----TTTG---------GTGACGCGTAATTTT-TTGGCGAGCAggg
gi|8 : aTCTAT--TA-GTA---------TGTTAATTGCTTAAACGATTCCCGCCTCGA-------T----------TT---ATTACATGTTAC-GACAATGC-AGTTG-CAAATA-CTTA--CA-GTTACA-------ATGC-CGA----TGCAAG-AAAGGCTTC-TTTTATGCGCATTTTCAATC-----TAAAT----TACATATTGAATC-TAAATT--CACTAATATTCTATTGAT-ATAC-AATAAG-TATACTGTAATT-TTGAG-AATGCATGATGTTTT-T--AAA-CGT-G-ATTTCA--TT-TTGTTCTC-------TT-CCCTATAC-TTAC-TTT-CGGAGGTG--T-CA--C-TGTCGGAGGTCAGCTTA-CAAAATCAC-TCAG--GTG---ACGAATCACTTTTG
gi|9 : AACTTACAAGCATTCAAA-AATGTCGCTTAATTTGATA-TT-TTCAATTGATAATATGGCAGTAAGT-GCGAA-ACC-TATATATACA-------------GACG--CTGTATC-GGTGTTAATAT--TTAAACTCAC-C---ATTAGA-GA------AAAACAAAA-TA-TATTTAGTATATTTGGTTTGGTCTAGACTTTAACATA--TCAA------AATGTA-AA---TCATAGGGA-G-TTTATTGAAGT-GCAA--GGTATTC--AAATTAACTATACAAC-AATTTGTTCACCGGATTTAAGCTGCTT-TGTTTAga
Alignments
lowQualScore : 1 1 1 1 1 1111 11111 555555555555555 1 11 11 22222 222222 444444444444 2222222 111 222222 333333 1 1 1 11 11 111 3333333 11 1 777777777777777777777777777777777777777777777777777777777777777777777777 11 22222222 1111 111 111 2222 33333333333 2222222 111111 1111 44444444444444444444444 5555555555555555555555555 22222222 222222222 222 1111 1111 1111111 1111111 222222 111 222222222222222 22222222 222222222 1111 111 3333333333333333333333333 11111 1111 33333333333333 444444444444 222 5555555555 22222222 555555555555555555 111 333333333 222 111111 222222222222222 33333333333333 1 3333333333 1111 11
lowQualScore : 3 0 0 0 0 8888 55555 2 8 999999999999999 4 0 33 33 00000 3 333333 8 8 111111111111 2222222 8 8 444 333333 222222 0 0 0 0 33 33 1 666 2 2222222 33 33 3 2 3 3 6 222222222222222222222222222222222222222222222222222222222222222222222222 11 8 55 5 99 99 11111111 4444 888 111 99 3 6 6 55 0 2 5 5 66 4444 5 1 6 0 1 4 5 4 55 5 4 5 5 88888888888 7 4 4 4 4 66 2222222 888888 1111 99999999999999999999999 1 888 1 0 5 4444444444444444444444444 66 5 66 00000000 888 2 5 5 666666666 888 5 777 888 0000 0 5 5 5 5 5 8 5 5 77 5 5 5 5 2222 5 5 3 0000000 0 77 1 888 2222222 666666 3 5 5 000 5 5 99 5 555555555555555 88888888 222222222 5 2222 333 9 9999999999999999999999999 66666 1 6 5555 6 99999999999999 1 333333333333 1 8 444 0 99 6 9999999999 44444444 0 6 000000000000000000 111 7 6 6 5 77 5 777777777 111 5 5 5 1 33 5 555555 111111111111111 5 0 3 44 5 5 5 1 9 5 00000000000000 0 555 77777 5 3333333333 5 5 66 0 4444 4 22 5 22 5 888 5
lowQualScore : . . . . . .... ..... . . ............... . . .. .. ..... . ...... . . ............ ....... . . ... ...... ...... . . . . .. .. . ... . ....... .. .. . . . . . ........................................................................ .. . .. . .. .. ........ .... ... ... .. . . . .. . . . . .. .... . . . . . . . . .. . . . . ........... . . . . . .. ....... ...... .... ....................... . ... . . . ......................... .. . .. ........ ... . . . ......... ... . ... ... .... . . . . . . . . . .. . . . . .... . . . ....... . .. . ... ....... ...... . . . ... . . .. . ............... ........ ......... . .... ... . ......................... ..... . . .... . .............. . ............ . . ... . .. . .......... ........ . . .................. ... . . . . .. . ......... ... . . . . .. . ...... ............... . . . .. . . . . . . .............. . ... ..... . .......... . . .. . .... . .. . .. . ... .
lowQualScore : 3 0 0 0 0 0000 88888 5 8 222222222222222 2 0 88 88 88888 8 000000 0 0 000000000000 8888888 0 2 888 000000 222222 0 0 8 0 88 88 0 555 0 5555555 88 55 5 5 2 3 7 000000000000000000000000000000000000000000000000000000000000000000000000 00 0 88 0 22 22 33333333 2222 333 777 22 8 7 7 66 1 4 7 7 44 3333 7 4 3 1 4 3 7 3 99 7 9 0 0 00000000000 4 4 4 4 4 99 8888888 444444 2222 99999999999999999999999 4 555 4 7 7 0000000000000000000000000 99 0 99 22222222 888 2 0 0 000000000 888 0 444 888 6666 1 0 0 0 7 7 9 7 7 99 7 7 7 7 1111 7 7 0 1111111 7 99 4 000 4444444 444444 0 7 7 000 7 7 22 7 444444444444444 11111111 999999999 7 1111 777 3 3333333333333333333333333 77777 0 3 0000 7 22222222222222 7 222222222222 4 0 444 8 22 7 2222222222 22222222 7 7 000000000000000000 777 3 7 7 7 99 0 444444444 111 0 0 0 0 22 0 666666 888888888888888 0 4 6 33 7 7 7 4 3 0 66666666666666 0 111 88888 0 9999999999 0 0 99 2 8888 4 44 0 66 0 888 0
consensus : NGGAAGCTTACAAGCATTCAAT-AATACAGATTATTTTAAAA-TT-TG-GATTGACAATATG-CAGTACTTAGCGAA-ACC-TATATATACACTAGTATGCGC--GATG--TTGCGTT-GATGTT--TAT--TTGAAATCAT-A---ATTAGAAGA------AAAACAAAA-TA-T------------TAGTTTGG----GACCT-AACATA--TTCA------AATGTA-A----TCATTGGGA-G-TTTATTGAAGT-GCAA--GATATTC--TAATTANATGTATGAT-AATTCGTTC-------TTA--CTGCTTGTATTTAGAG-AAACGTGCACGTAGCATGTAGCANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAATGAATACACAATATACAN-ATGTGCAT-GCAAGGTGACTGT--AAATAA--TTATGTG----ATTTCCAAAG----AGACAACAA---AT---TT--TGAAAGATGAA-TTTCATTTTCGTTTATATACCGTATATTTTCACCTAG-ATGTA-TACTTCCG-AT----AT-TGTATGTAATCGTATGTACATTTTCAATC-GTATCTGCAATATT-ATAATA-TCATAACAGA-TGT-TCGGTGTCGATAACCAACCA----C--ATACATGCATGATCAGA-T-TCC-TGA-TTTCTGT--AAAC-T-----GCAAA-A--C-TCGGAC--CATTCGT---CAA--GCATT-----TGTAGGAAAAA-TATTCGACTCTGG-AC-----------AC---CT-------TCC--CTGA-TTG--AAAACAT------A-CTC---ACTG-G-CACGG---GTG--AA---GTGT-G-T-GC---AG----TCTGTA-TAG-T-GGAG-TG-ACAACGT-GT-T--CTG-TCGA-G-ATAC-AAATGGAG----TTTATTA-T-TTTGTTTCTTGGAT--TTAT-CAGAATA--AAG-A-GA-GTC---TAACA------TNTTTGGTA-AG-TGCACAC---CT-C-CGGTC--CCGGTAT-A----------GC---TTTCCGTA-------TTTG---------GT-ACGT----TTTC-TTGGCGAGCATGCGATGT---------GCAT------------TACATATGCA-----CCAGNATTTCGCA-AG-AACT-G--------------ATTGTG----------A-ACAA-TAAGTATTTT-AATGTTCTTTGCTTATTCCATTCTAT--TA-GTA---------TGCTAA--------ACGATTCC-GCCGCGA-------T----------TT---TTTACATGTTACTGACA-TGCTAGTTG-CAAATA-CTTG--CA-TGTACA-TG-A-CATGCACGAAGTATGCAAG-AAAAGCTTC-TTTT-TNTGCATTTTCA-TC-----TACAT----TA---------TC-TAAATTTTCACTAATATTCTATTGAT-ATAC-AATAAG-TATACTGTAATT-TTGAGCAATGCATGATG--TT-T--AAA-CGT-G-ATTTCA--TT-TGTTTCTCAT-----TT-CCCTATACATTAC-TAT-CGGAGGTG--TGCA--C-GGTC-GAGTCCAGC-TA-NAAAATCAC-TCAGGTGTG---AC-AATCACTTTTG
Reference ( family-362 ) : NGGAAGCTTACAAGCATTCAAT-AATACAGATTATTTTAAAA-TT-TG-GATTGACAATATG-CAGTACTTAGCGAA-ACC-TATATATACACTAGTATGCGC--GATG--TTGCGTT-GATGTT--TAT--TTGAAATCAT-A---ATTAGAAGA------AAAACAAAA-TA-T------------TAGTTTGG----GACCT-AACATA--TTCA------AATGTA-A----TCATTGGGA-G-TTTATTGAAGT-GCAA--GATATTC--TAATTANATGTATGAT-AATTCGTTC-------TTA--CTGCTTGTATTTAGAG-AAACGTGCACGTAGCATGTAGCANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAATGAATACACAATATACAN-ATGTGCAT-GCAAGGTGACTGT--AAATAA--TTATGTG----ATTTCCAAAG----AGACAACAA---AT---TT--TGAAAGATGAA-TTTCATTTTCGTTTATATACCGTATATTTTCACCTAG-ATGTA-TACTTCCG-AT----AT-TGTATGTAATCGTATGTACATTTTCAATC-GTATCTGCAATATT-ATAATA-TCATAACAGA-TGT-TCGGTGTCGATAACCAACCA----C--ATACATGCATGATCAGA-T-TCC-TGA-TTTCTGT--AAAC-T-----GCAAA-A--C-TCGGAC--CATTCGT---CAA--GCATT-----TGTAGGAAAAA-TATTCGACTCTGG-AC-----------AC---CT-------TCC--CTGA-TTG--AAAACAT------A-CTC---ACTG-G-CACGG---GTG--AA---GTGT-G-T-GC---AG----TCTGTA-TAG-T-GGAG-TG-ACAACGT-GT-T--CTG-TCGA-G-ATAC-AAATGGAG----TTTATTA-T-TTTGTTTCTTGGAT--TTAT-CAGAATA--AAG-A-GA-GTC---TAACA------TNTTTGGTA-AG-TGCACAC---CT-C-CGGTC--CCGGTAT-A----------GC---TTTCCGTA-------TTTG---------GT-ACGT----TTTC-TTGGCGAGCATGCGATGT---------GCAT------------TACATATGCA-----CCAGNATTTCGCA-AG-AACT-G--------------ATTGTG----------A-ACAA-TAAGTATTTT-AATGTTCTTTGCTTATTCCATTCTAT--TA-GTA---------TGCTAA--------ACGATTCC-GCCGCGA-------T----------TT---TTTACATGTTACTGACA-TGCTAGTTG-CAAATA-CTTG--CA-TGTACA-TG-A-CATGCACGAAGTATGCAAG-AAAAGCTTC-TTTT-TNTGCATTTTCA-TC-----TACAT----TA---------TC-TAAATTTTCACTAATATTCTATTGAT-ATAC-AATAAG-TATACTGTAATT-TTGAGCAATGCATGATG--TT-T--AAA-CGT-G-ATTTCA--TT-TGTTTCTCAT-----TT-CCCTATACATTAC-TAT-CGGAGGTG--TGCA--C-GGTC-GAGTCCAGC-TA-NAAAATCAC-TCAGGTGTG---AC-AATCACTTTTG
gi|1 : GGAAGCTTACAAGCATTCAATTAATACAGATTATTTTAAAA-TT-TG-GATTGACAATATG-CAGTACTTAGCGAA-AACGTATATATACACTAGTATATGCATGA-G--TTGCGTTTGATGTT--TAT--TTGAAATCAT-A---ATTAGAAGA------AAAACAATA-GA-T------------TAGTTTTG----GACCT-AATATA--TTCA------AATATAGA----TCATTGAGA-GTTTTATTGAAGT-GCAA--GATATTG--TAATTCTATGTATGAT--ATTCATTC-------TTA--CTGCTTGTATTTAGAGAAAACGTGCACATA-CATGTAGCA
gi|1 : AATATACATTATGTGTAT-GCAA--TGACTGT--AAATAA--TTATGTG----ATTTCCAAAG----AGACGACAAT--AA---TT--TGAAAGGTGAA-TTTCATTTTC-----TATACCGTATATTTTCACCTAG-ATGTAATACTTCCG-ATCATTAT-TGTATGTAACCATATGCACATTTTGAATT-GTATCTGCAATATT-ATAAAA-TCAGAGCAGAATGTGTCAGTGTCGATAACCAAC----------TACATGCATGATCAGA-T-TCCCTGAGTTTCTGT--AAACCT-----GCAAA----C-TCGG-CGACATTC------AA--GC--------TGAAGGAAAA--TATTCGACTCTGG-A------------AC---CT-------TCC--CTGA-TTG--AAAACGT------A-CTC---ACTG-G-CACGA----TG--AA---GTGT-G---GC---AG----CCTGTA---G-T-GGAG-TG-ACAAAGT-GG-T----G-TCGACG-ATAC-GAATGGAG----TTTTTT--T-TTTGTTTCTTG-AT--TTAT-CAGAATA--A-G-A-GA-GTC---TAACA------TTTTTGGTA-AG-TGCACAT---CT-C-CGGTC--CCGGTAT-A----------AC---TTTCCGTA-------TTTT---------GT-GCGT----TTTC-TTAGCGAGCATGCGATGTTTTTAGCGAGCATGCGATGTGCATATACATATGCA-----GCAGCATTTCGCA-A--AACT-GAAATTGAAATAATAATTGTG--------------AA-TAAGTATTTT-AATGTTCTTTGCT------AGTGTG---TA-AT----------TGCAAA--------ATGATTTC-ACCG-GA-------TTTTTTTTTTCTT---TTTACATGTTATTGACA-TGATAGTGG-GAAATA-CTTG--CA-TGTACACTGTA-CATGCACGAAGTATGCAAG-AAAAGTTTC-TTTT-TCTGCATTGTCA-TC-----TACAT----TA---------TC-T-AATTTTCACTAATATTCTATTGATGATAC-AATAAGTTATATTGT-ATT-TTGAGCAATGC--------------AAA-CGTGG-ATTTC-----------CCC-------TT-CCCTAAACATTAC-TAT-CGGAGGTG--TGCA--CTGGTC-GAGTACAAC-TAGAAAAATCAC-TCAGGTGTG---AC-AATCACTTTTGnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngtttgtcaatgaatatacattatgtgtatgcaatgactgtaaataattatgtgatttccaaagagacgacaataatttgaaaggtgaatttcattttctataccgtatattttcacctagatgtaatacttccgatcattattgtatgtaaccatatgcacattttgaattgtatctgcaatattataaaatcagagcagaatgtgtcagtgtcgataaccaactacatgcatgatcagattccctgagtttctgtaaacctgcaaactcggcgacattcaagctgaaggaaaatattcgactctggaaccttccctgattgaaaacgtactcactggcacgatgaagtgtggcagcctgtagtggagtgacaaagtggtgtcgacgatacgaatggagttttttttttgtttcttgatttatcagaataagagagtctaacatttttggtaagtgcacatctccggtcccggtataactttccgtattttgtgcgttttcttagcgagcatgcgatgtttttagcgagcatgcgatgtgcatatacatatgcagcagcatttcgcaaaactgaaattgaaataataattgtgaataagtattttaatgttctttgctagtgtgtaattgcaaaatgatttcaccggattttttttttctttttacatgttattgacatgatagtgggaaatacttgcatgtacactgtacatgcacgaagtatgcaagaaaagtttctttttctgcattgtcatctacattatctaattttcactaatattctattgatgatacaataagttatattgtattttgagcaatgcaaacgtggatttccccttccctaaacattactatcggaggtgtgcactggtcgagtacaactagaaaaatcactcaggtgtgacaatcacttttgg
gi|10 : ggaagcttacaagcattcaattaatacagattattttaaaatttggattgacaatatgcagtacttagcgaaaacgtatatatacactagtatatgcatgagttgcgtttgatgtttatttgaaatcataattagaagaaaaacaatagattagttttggacctaatatattcaaatatagatcattgagagttttattgaagtgcaagatattgtaattctatgtatgatattcattcttactgcttgtatttagagaaaacgtgcacatacatgtagcannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngtttgtcaatgA-TGTACA-TG-AACATGCACGAAGTATGTAAG-AAAAATTTCCTTTT-TCTGCATTTTCA-TC-----TACAT----TA---------TC-TAAATTTTCACTAATATTCTAT--A----AC-AATAAA-TAT-TTGCGCTTGTTGAGCAATGC--GAGG---------AA-CGT-G-ATTTTA--TTATGTTTCTCGT-----GTACCCTATACATTACTTAT-CGGA-ATGATTGCAGCT-GGTC-GAGTCCAAG-CA-GAAAATCTCTTCAGATGTGACCAC-AATCACTTTTGg
gi|11 : TTCATAT----TATATTTTCACCCAG-ATTT--TAATTCCT-ATCATTAT-TGTATGTAATCGTGTTTAAAT----AATCTGTA-----AATTTTCATAATATTCA-AACATA-TGT-CCAGT--------------A----C--GTAAATATATGATCAGCTT-TCC-TAA-TCTCTGT--AAA---------CAAATA--A-TTG-----CATGCATATACAA--G--TG-----TGCAAGAAAAA-gt
gi|12 : ttgcaaaggcgtgaagatccatttaaaaaaataaAAATA-ATTG--CA-TG----------CATATAC-AAGTGTGCAAGAAAAAAC--C-TTTT-CTTAC--TTTCT-TC-----GGAAT----GA---------TC-TTAACTTTCA--AA-A-TCT-----T-ATAC-A--CAG-TATAC-GC--TT-TTAAACAATATATGACG--TTAT--GAATCGT-T-ATTTCA--GT-TGTTTATC--------------ATACATTA--TACACGTAGGTG--TACAT-T-GGTC-GAG------------------C-GCAGGTGTG---AC-AAT
gi|13 : ---CT-------CTC--ATGA-TTG--AAGACA---------------GCTG-G----------TT--TA---GTGT-G-TCGC---AG----TTTGTA-TAA-T-GGAG-TT-ACAATAT-AT-TTTCTG-TCGG-A-ATAC-AAATGGAG----TTTATCA-C-CTAATTTGTGGAAT--T--C-CA-AATA--GAGTG-GA-A-----TAACG------CTTCCGGTT-AG-AACACAT---TT-C-aaactctgg
gi|14 : tAGA-TGT-TCGGAGAAGAAAACCAACC-----C-----TATG------CAGA-T-TCC-TGA--TTCTAT--AAAC-T-----GCAAA-A--CACCTGAC--CA---GT---CAA--GCATTCAA--TCTA-CAAATA-TATTCGACTCAGA-AC-----------A-------------TCC--CTAA-TTGGAAAAAAAT------A-CTT---ACTG-G-CACTG---GTG--AA---ATGT-GTT-GT---AA----TCCGTA-TAA-T-ggcaagaaaaacatttccggttcgctacagttgtcccag
gi|15 : tGAA-TTTCATTTTCCTTTGTAAGCCGTATATTTTCACCTAG-ATGTA-TACTTCCG-AT----AT-TGTATGTAATCATATGTACATTTTCAATC-GTATCTGCAATATT-ATAGTA-TCATAACAGA-TGT-TCAGTGTCGATAACTAACC----------ACATGAATGATCAGA-T-TCC-TGT-TTT
gi|16 : ATTTTAAAAGTT-TG-AATTGGCAATATG-CAGCA------------------TATA---TAG---------GAT---TTGCATT-GATGTT--TATATTTGAAATCAT-G---ATTAGAAGT------AAAACAAAA-TA-T------------TAGTTT-G----GACAC-AAGATG--TGCA------a
gi|17 : AATATATAA-AAGTGCAT-GCAAGGTGAATGT--CAGTAA--TTATGTG----AT------AG----AGACAACAA---AT---TT--CGAGAGATGAA-TTTTATGTTTGCTTATA-ATAGTGTGTTTTTGCCCAATATGT
gi|18 : aATT-TTCAGCAGCACAGGATG--TT-T--TAA-AAT-A-AATGCA--CG-TGCATCTTACCGGTATT-TCTTATGCATTAC-TGT-TTGAGATG--CACA--C-GATC-
gi|19 : AG-ATGTGCATTGCAAGGTGACTGT--AAATAA--TTATGTG----ATTTCCAAAG----AAACAACAA---AT---TT--TGAAAG
gi|2 : aGAAAGCTTACAAGCATTCAAT-AATACAAATTATTTTAAAA-GTGTG-GATTGACAAAATG-CGGTACTTAGCGAATACC-TATATATACACTAGTATGCAT--GATGAGTTGCTTT-GATCTT--TAT--TTGAAATCATCATGCATTAGAAGA------AAAACATAA-TA-T------------TGTTTTGG----GACCT-AA-ATAAATTCA------TATGTA-A----TCATTGGGA-G-TGTATTGAAGT-GCAA--GATATTC--TAATTATATGTATAAT-A-TTCATTC-------TTA--CTACATGTATTTAGAG-AAACGTGCACGTAGCANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAATGAATACACAACACACAT-ATGTGTAT-GCAAGGTGA-TGT--AAATAA--GTATGTG-----TTCCCAAAG----AGACACCGA---ATGCATT--GAAAAGATGAA-TTTCATTTTCGTTTATATACCGTATATTTTCACCAAG-ATGTA-TACTTCCG-AT----AT-TGTATGTAACCATATGTACATTTTGAATT-GTATCTGCAATATT-GTAATA-TCAGAGCAGA-TGT-TCAGTGTCGATAGCCAACTA----CGTATACATGCATGATCAGA-T-TCC-TGA-TTTCTGT--AAAC-T-----GCAAA----C-TCGGAC--CATTCATG--CAA--GC--------TGAAGGAAAAA-TATTCGACTCTGG-AC-----------AC---CT-------TCC--CTGA-TTG--AAAACGT------A-CTC---ACTG-G-CATGG---GTG--AA---GTGT-G---AC---AG----TCTGTA-TAG-T-GCAG-TG-ACAAAGT-GT-T--CTG-TCGA-G-ATAC-TTTTGGAG----TTTATTA-T-TTTGTTTCTTGGAT--TTAT-CAGAATA--AAG-A-CA-GTC---TAACA------TATTTGGTA-AG-TGCACAT---CT-C-CGGTC--CCGGTAT-A----------AC---TTTCCGTA-------TTTG---------GT-GCGT----TTTC-TTAGCGAGCATGTGATGT---------GCAT------------TACATATGCA-----TCAGCATTTCGCA-AT-AACT-G--------------ATTGTG----------A-ATAA-TAAGTATTTTAAATGTTCTTTGCTTATTCCATTCTAT--TA-GTG---------TGTTAA--------ATGATTTC-GCCGCGA-------T----------TT---TGTACATGTTATTGACA-TGATAGTGG-CAGATA-CTTG--CA-TGTACA-TGAA-CATGCACGAAGTATGCAAG-AAAAGTTTC-TTTT-TCTGTATTTTCA-TC-----TACAT----TA---------TC-TAAATTTTCACTAATATTCTATCGAT-ATAC-AATAAG-CATATTGTGATT-ATGAGTAATGC--------------AAA-CGT-GAATTTCAATTT-TG-TTCTCAT-----TT-CCCTATACATTAC-TAT-CGGAGATG--TGCA--T-GGTC-GAGTCCAGC-TA-AAAAATCAC-TCAGGTGTG---AC-AATCACTTTTG
gi|20 : g--C-GGTT-GAGTCTAGA-TA-CAAAGTCAA-TCAGGTGTG---AC-AATC
gi|3 : acAT-A---TTTAGAGGAGTGGGTAAAACAAAAATAAT------------TAGTT-------GACCT-AACAC---TTCAGGATGTAATGTA-ACCACTCATTGAGATG-TCTATGTAAGTTGCAACGAATATACCATAATTAGATGTATGATAAATTCATTC-------TTA--C-----GTA-TTAGTG-ATTTATGCACGTAGCAT
gi|3 : tTGAGCTT-GCA--GTGACTGTTTAAATAAGATGATGTGGGGGAT--CCAAAGGAGGAGACAACAACAAAT---TTCTTGAAAG-TGAAATTTCATTTTCCTTTGTTAACCGTAT---------------GTA-TACTTCCG-AT---------------ATTGTATGT----------TC-ATATATACATTTTT--CAAAA-TCGTATC----TG---CACTATTATTAATTA-TCA----T--A-ACA-G-ATG-TCAGG-TATC---GA-T---------AAC-A-----ACCAA-A--T-TCAG----CGTTTGT---CAATCGCATCA----TATAGTGAAAA-TCTTCCACT---G-AC------------C---CC-------TC-----GA---G--AAAACATGACCGTA-CTC---ATTG-G-CACGG---A----AA---GTGTAG-C-CC---AG----TTTG-A-TAGCT-GGAG-TG-ACAA-GT-GT-T--CTG-TCGA-G-ATAC-AAATGGAGGTTCTTTATTA-T-TTTGTTCTTTGCAT--TT----------------------------------------TTTGCTA-AGGTGTAGACATGCT-CACGTTTTACCGGTAT-A----------TT---CTTTCGT--------TATG---------GT-ACGT----TTTCTTTGGCGTGCATTACATAT---------GCAT------------T-TTTATGCGACGATCCAGTATTT-GCACCC-AACTAG--------------ACTGTGTTCTGTGGCCATATAATTAAGCATTT---ATGTTCTTTGCTTATTCCAT--TAT--TAGGTATGTAATT--TGCTAA--------ATGATTTT-GCCGCGA-------T----------TTCTATTTACATGTCACTAACA-TGCTAGTTGCCAAATACCTTGGCCATTGTACA-TG---C---CAC---GTATGCAAG-AAAATCTTC-TATT-TTTG----TTGA---------ACAT----T----------TCATAATTTATCACTAATATTctcctttctttaannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncctatcggcctcctctcctcttcgtactccctctcctctcaccttctccttcgtctcctgttttgtcatgtctatgtatacaaagtatgtgctatttgaatggtgagcttgcagtgactgtttaaataagatgatgtgggggatccaaaggaggagacaacaacaaatttcttgaaagtgaaatttcattttcctttgttaaccgtatgtatacttccgatattgtatgttcatatatacatttttcaaaatcgtatctgcactattattaattatcataacagatgtcaggtatcgataacaaccaaattcagcgtttgtcaatcgcatcatatagtgaaaatcttccactgacccctcgagaaaacatgaccgtactcattggcacggaaagtgtagcccagtttgatagctggagtgacaagtgttctgtcgagatacaaatggaggttctttattattttgttctttgcattttttgctaaggtgtagacatgctcacgttttaccggtatattctttcgttatggtacgttttctttggcgtgcattacatatgcatttttatgcgacgatccagtatttgcacccaactagactgtgttctgtggccatataattaagcatttatgttctttgcttattccattattaggtatgtaatttgctaaatgattttgccgcgatttctatttacatgtcactaacatgctagttgccaaataccttggccattgtacatgccacgtatgcaagaaaatcttctatttttgttgaacatttcataatttatcactaatatt
gi|4 : tatatttagaggagtgggtaaaacaaaaataattagttgacctaacacttcaggatgtaatgtaaccactcattgagatgtctatgtaagttgcaacgaatataccataattagatgtatgataaattcattcttacgtattagtgatttatgcacgtagcatctcctttctttaannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncctatcggcctcctctcctcttcgtactccctctcctctcaccttctccttcgtctcctgttttgtcatgtctatgtatacaaagtatgtgctatttgaatgg--AAATAA--TTATGTG----ATT-CCAAAG----AAACAACAA---AT---TT--TGTAAGATGAA-TTTCATTTTGGTTTATATATCGTATATTTTCACCTAG-ATGTA-TAATTCCC-AT----AT-TGTATGTAATCATATGTACATTTTCAATC-GTATCTG-AATAAT-AT-ATA-TCATAATAGA-TGT-TCGGTGTCGATAATTAACC----------ACATGCATGATCAGA-T-TCC-TGA-TTTCTGT--AAAC-T-----GCAAA-A--C-TCGGAC--CAC---T---CAA--GCATTCAATATATACGAAAAC-TATTCCACTCTGG-AC-----------A----TT-------TCC--CTGA-TTG---AAACAT------A-CTT---A-TG-G-CACGT---GGC--AA---GTGT-G---GC---AG----TCTGTA-TAG-T-GGAG-TG-ACAACGT-GT-T--CTG-TCGA-G-ATAC-AAATGGAG----TTTATTA-T-TTTGTTTCTTGGAT--ATAT-CAGAATA--AAG-A-GA-GTC---TAACA------TA-TTGGTA-AG-TGCACAC---CT-C-C-GTC--CCGGTAT-A----------GC---TTTTCGTATTGCCATTTTA---------GT-ACGT----TT---TTGGCGAGCATGCTATGT---------GCAT------------TACATGTGCA-----CCAGGATTTTGCA-AG-AACT-G--------------ATTGTG------------ACAA-GAAGTATTT---ATGTTCTTTGCTTATTCCATTCTATAGTA-GTAAT-------TGCTAA--------ACGATTCC-GCCGCGA------------------TT---TTTACATGTTAC-GACA-TGCTAGTTG-CAAATA-CTTA--CA-GGT-------A-CATGCAC---GTATGCAAG-AAAAGCTTC-TTTT-TGCGCATTTTCA-TCTAAATTACATATTGTA---------TC-TAAATTTTCAATAATATTTCATTGAT-ATACAAATAAG-TATACGTTAATT-TTGAGCAATGCATGATG--TT-T--AAAGCGT-G-ATTTCA--TT-TGTTTCTCAT-----T---CCTATACATTAC-TAT-CGGAGTGG--TGCA--CTGGTC-GAGTTCAGC-TA-CAAAATCAC-TCAGGTGTG---AC-AATCAATTTTG
gi|5 : TGTA-TACTTCCCCAT----ATGTGTA-GTAATT-CATG-ACATTTTCAATC-GTATCTGAATTAAT-ATAATA---ATAATAGA-T-T-TCGTTGTCGATAATTAACCA----C--AT----GCATGATCAGA-T-TCC-TGA-TTTCTGTGAAAAC-------GCAAA-AAAC-TCGGAC--CAC-CGT---CAA--GCATCA----TATAGGAAAAAATATTCCACTCTG--AC-----------AT----T-------TCC--CTGA-TTG--AAAATAC------AACTCCAAATTTTG-CCCCCCCCGTGGCAA---GT-T-G---GC----G----TCTGTA-TAG-T-GGAGCTG-ACAACGTTGTCT--CTG-T--G-G-ATACCAAATGGAG----TT-ATTA-T-TTGATTTCTTGGAT--ATAT-CAGAATT--AAG-A-GA-GTC---TAACATACATGTATTTGTCA-AG-TGCACAC---CT-C-CGGTC--CCGGAATCA----------GC---TTTTCGTA-------TTTGCCATCTTTAGT-ACGT----TT---TTGGCGAGCATGC-ATGT---------G-A--------------ACATGTGCA-----CCAGGGATTTGCA-AGAAACT-G--------------A-TGTG----------A-
gi|6 : gatT-A----------GC---TTTCCGTT-------TTTG---------GA-ACGT----TTTA-GTGGCGAGCATGCAATGT---------GCAT------------TACATATGCA-----CCAGTATTTTACA-AG-AAAT-G--------------ATTGTG----------A-ACAA-TAAGTATGTT-TATGTTCTTTGCTTATTCCATTCAAT--TA-GTATATGTAACTTGCTAA--------ATGATCCC-ATCGCGATATTTTTT----------TT---TTTACATGTTACTGACA-TGCTAGTTG-CAATTA-C-TG--CA-TGT-------A-CACGCAC---GTATGCAAG-AAAAGCTTC--TTT-TGTGCA-----A-TC--------------TA---------TC-TAAATTACCACTAATATTCTATTTAT-ATAC-AATACG-TATACTGTAATT-TTGAGCAATACATACTG--TT-TTAAAA-CGT-G-ATTTCA--TT-TGTTTCTCA------TT-CCCTATGCATTAC-TAT-CGGAGGTG--TGCA--C-GGTC-GAGTTCAGC-TA--AAAATCAC-TCGGGTGTG---AC-AATTACTTTTG
gi|7 : CAACCATGGTC--ACACGTGTAAAATCGGA-T-TCC-TGA-TT-CTGT--AAAC-CTCTTGGCATA-A--G-TCACGC--AATT--T---CA----TAAT-----TGTAGGAAA---T-TCCGACTCTGGTACGTGATTGAAAAACTCGCTATGTTAGTCCTGCTGAATTG--AAAACATT-----G-CTC---ATTG-GGCACGA---G-G--AACAAGTGT-G-T-GCTCCAGATACCCTGGAGTAT-TCGGAG-TGTACA-TGT-TT-T--CTGCTCGA-GTATAC-AAATGAGA----TTTATTAATATTTGTTTCTTGGATATTCATACAGAATATAAAG-ATGACGTTAGATAACACTA---TTTCTGGTATAG-TGCACAC---CTTC-CGGTC--CCGGTAT-ATCTGAAAAATGCTTGTTCCCGTATG-----TTTG---------GTGACGCGTAATTTT-TTGGCGAGCAggg
gi|8 : aTCTAT--TA-GTA---------TGTTAATTGCTTAAACGATTCCCGCCTCGA-------T----------TT---ATTACATGTTAC-GACAATGC-AGTTG-CAAATA-CTTA--CA-GTTACA-------ATGC-CGA----TGCAAG-AAAGGCTTC-TTTTATGCGCATTTTCAATC-----TAAAT----TACATATTGAATC-TAAATT--CACTAATATTCTATTGAT-ATAC-AATAAG-TATACTGTAATT-TTGAG-AATGCATGATGTTTT-T--AAA-CGT-G-ATTTCA--TT-TTGTTCTC-------TT-CCCTATAC-TTAC-TTT-CGGAGGTG--T-CA--C-TGTCGGAGGTCAGCTTA-CAAAATCAC-TCAG--GTG---ACGAATCACTTTTG
gi|9 : AACTTACAAGCATTCAAA-AATGTCGCTTAATTTGATA-TT-TTCAATTGATAATATGGCAGTAAGT-GCGAA-ACC-TATATATACA-------------GACG--CTGTATC-GGTGTTAATAT--TTAAACTCAC-C---ATTAGA-GA------AAAACAAAA-TA-TATTTAGTATATTTGGTTTGGTCTAGACTTTAACATA--TCAA------AATGTA-AA---TCATAGGGA-G-TTTATTGAAGT-GCAA--GGTATTC--AAATTAACTATACAAC-AATTTGTTCACCGGATTTAAGCTGCTT-TGTTTAga
blockSeqs : . G G C G CTTA TACC C C TATGCATGATGAG A . AA AT CATGC A GTGGGT A A ATTTAGTATATT TGGTCTA T G AAA GGATGT ACCAC T . T CG CA T AAA A ACCGGAT AG TA A G T . G A T AG A TT GA GGGGAT GAGG CAA GCA CT A A C AG C T . CC CATT G T G T C T C CA T T . . CATGGTCAC T T A . . GA CTCTTG AAAC AC TTTGTCAATCGCATCA A AAA A T GTGATTGAAAAACTCGCTATGTTAG TG A GA GACCGTA CAA C T G CCCCGTGGC CAA A TC TCC ATAC G C C C T T T C TT C . T C GTTC A A A ATTCATA TA A TG CGTTAGA TACATG T T G ATG T A TA C TCTGAAAAATGCTTG ATTGCCAT CCATCTTTA G GTAA TCT G GCAT ACGAT C C CCC A . T TTCTGTGGCCAT T T TAA AG G ATATGTAACT TTGCTTAA C TATTTTTT CTA T A C C GC T ACATGAA GAA A C A C AT A TAAATT TACATATTGAA A T CG . A . T G G ATACTGTTTTA T GA ATTT T ACCGGTATT T A AT GCT G TC T G T ACC G
blockSeqs : . . . . . AGT ACC C . GACG T . . . G A . . . . TGG . C G . AA . . . . . G AA A . . TG T G T . G G . AG C . . ATTT . . . . A . G TA T . . T . . T A T G . C A . G . . TACGTAT A . . . . . T TAA AC CTCAAGCATTCAATA G AA A . ACCT . . . AA . C . . GGTG . . TT . . . . . . . A . . . . . . . . . . G TTAT . A AT GTC CTA A . . . . . . . AC ATG . . . TC C GCAT . T T AGA . . C A T . TT . . ATGTAATT . . T . T . . . . . ACATGAA GAA . . . T AT . T ATTGTA . T TG . . . T G . ATGATGTTTTT G G TTA T GTGTA . . . TT . TC . A . . .
blockSeqs : . . . . . . . . GAT A . . . A G . . . . TG . C A . A . . . . . A A G . . . . . . T . AG C . . TTC . . . . A . G AA C . . G . . T A T C . C G . T . . CACAT C . . . . . T ACA AC TGCATATACAAGTG G TA C . CCC . . . TG . C . . GGTG . . C . . . . . . . C . . . . . . . . . . C ATAT . A A GTC . A . . . . . . . TT A . . . TA T GCAT . G T AT . . T A C . . . . AAT . . T . T . . . . . ACATG AA . . . C AT . G TA . T TT . . . G A . ATGACGTTAT . T GT C ATTT . . . CT . TC . C . . .
blockSeqs : C . . . . . . . . . . . . . . . ATT . . . . . . C TA A . . G . . T G T C . A A . T . . ACGT C . . . . . A AT AC GTCAAGCATTCAA C AA A . ATT . . . A . T . . TGGC . . T . . . . . . . C . . . . . . . . . . G ATAT . A A GTC . A . . . . . . . GC A . . . TT A GCAT . G T AG . . T A C . . . . G . . T . . . . . . . ACA GA . . . T AT . T GA . A TG . . . T A . AGGATGTTT . A CG T ATT . . . C . TT . C . . .
blockSeqs : . . AT . . . . . G T T . . G . . . A . . . . A . T . . CATA C . . . . . T AC GC CCGTCAAGCATCA G AA A . ATT . . . A . T . . AGG . . . . . . . . . . T . . . . . . . . . . G TC . A A A . T . . . . . . . GC T . . . . . GA . T . AG . . . . . . A . . . . . . . . . . A . . . . G A . T TA . T . . . . T A . ATGATGTTT . G TT T ATT . . . T . TT . C . . .
blockSeqs : A . . . C . . . . . . . . . . . . . CC T . . . . . . AG . TTCATGCAAGC G AC . . A . . . A . T . . TT . . . . . . . . . . . . . . . . . . . . . G TT . . . . . . . . . . . . GC . . . . . . . . A . . . . G . . . TA . A . . . . . . . GAGG . G TT G TT . . . C . GT . . . . .
blockSeqs : . . C . . . . . . . C . TTTCATAAT . . . . . . . . . . GA . . . . . . . . . . . . . . G . . . T . . . . . G TT . . . . . C . . . . . . .
blockSeqs : C . . . . . C .
blockSeqCons : TG***** AG ATT***** *** **** CACAC****** T****** AC**** AC** TTCAAGCATNCAA********** AA* ACT********************** NGTG***** GCAT********************* AG** ************** A*********** T** AAT******* T***************** ACA****** A** ATGATGTTT***** G** TT*** ATT******* C*** C*
originalCons : NGGAAGCTTACAAGCATTCAAT-AATACAGATTATTTTAAAA-TT-TG-GATTGACAATATG-CAGTACTTAGCGAA-ACC-TATATATACACTAGTATGCGC--GATG--TTGCGTT-GATGTT--TAT--TTGAAATCAT-A---ATTAGAAGA------AAAACAAAA-TA-T------------TAGTTTGG----GACCT-AACATA--TTCA------AATGTA-A----TCATTGGGA-G-TTTATTGAAGT-GCAA--GATATTC--TAATTANATGTATGAT-AATTCGTTC-------TTA--CTGCTTGTATTTAGAG-AAACGTGCACGTAGCATGTAGCANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAATGAATACACAATATACAN-ATGTGCAT-GCAAGGTGACTGT--AAATAA--TTATGTG----ATTTCCAAAG----AGACAACAA---AT---TT--TGAAAGATGAA-TTTCATTTTCGTTTATATACCGTATATTTTCACCTAG-ATGTA-TACTTCCG-AT----AT-TGTATGTAATCGTATGTACATTTTCAATC-GTATCTGCAATATT-ATAATA-TCATAACAGA-TGT-TCGGTGTCGATAACCAACCA----C--ATACATGCATGATCAGA-T-TCC-TGA-TTTCTGT--AAAC-T-----GCAAA-A--C-TCGGAC--CATTCGT---CAA--GCATT-----TGTAGGAAAAA-TATTCGACTCTGG-AC-----------AC---CT-------TCC--CTGA-TTG--AAAACAT------A-CTC---ACTG-G-CACGG---GTG--AA---GTGT-G-T-GC---AG----TCTGTA-TAG-T-GGAG-TG-ACAACGT-GT-T--CTG-TCGA-G-ATAC-AAATGGAG----TTTATTA-T-TTTGTTTCTTGGAT--TTAT-CAGAATA--AAG-A-GA-GTC---TAACA------TNTTTGGTA-AG-TGCACAC---CT-C-CGGTC--CCGGTAT-A----------GC---TTTCCGTA-------TTTG---------GT-ACGT----TTTC-TTGGCGAGCATGCGATGT---------GCAT------------TACATATGCA-----CCAGNATTTCGCA-AG-AACT-G--------------ATTGTG----------A-ACAA-TAAGTATTTT-AATGTTCTTTGCTTATTCCATTCTAT--TA-GTA---------TGCTAA--------ACGATTCC-GCCGCGA-------T----------TT---TTTACATGTTACTGACA-TGCTAGTTG-CAAATA-CTTG--CA-TGTACA-TG-A-CATGCACGAAGTATGCAAG-AAAAGCTTC-TTTT-TNTGCATTTTCA-TC-----TACAT----TA---------TC-TAAATTTTCACTAATATTCTATTGAT-ATAC-AATAAG-TATACTGTAATT-TTGAGCAATGCATGATG--TT-T--AAA-CGT-G-ATTTCA--TT-TGTTTCTCAT-----TT-CCCTATACATTAC-TAT-CGGAGGTG--TGCA--C-GGTC-GAGTCCAGC-TA-NAAAATCAC-TCAGGTGTG---AC-AATCACTTTTG
finalCons : NGGAAGCTTACAAGCATTCAAT-AATACAGATTATTTTAAAA-TT-TG-GATTGACAATATG-CAGTACTTAGCGAA-ACC-TATATATACACTAGTATGCGC--GATG--TTGCGTT-GATGTT--TAT--TTGAAATCAT-A---ATTAGAAGA------AAAACAAAA-TA-T------------TAGTTTG-----GACCT-AACATA--TTCA------AATGTA-A----TCATTGGGA-G-TTTATTGAAGT-GCAA--GATATTC--TAATTANATGTATGAT-AATTCGTTC-------TTA--CTGCTTGTATTTAGAG-AAACGTGCACGTAGCATGTAGCANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAATGAATACACAATATACAN-ATGTGCAT-GCAAGGTGACTGT--AAATAA--TTATGTGATT-----CCAAAG----AGACAACAA---AT---TT--TGAAAGATGAA-TTTCATTTTCGTTTATATACCGTATATTTTCACCTAG-ATGTA-TACTTCCG-AT----AT-TGTATGTAATCGTATGTACATTTTCAATC-GTATCTGCAATATT-ATAATA-TCATAACAGA-TGT-TCGGTGTCGATAACCAACCACAC------ACATGCATGATCAGA-T-TCC-TGA-TTTCTGT--AAACT------GCAAAAC----TCGGAC--CATTCAAGCATNCAA----------TGTAGGAAAAA-TATTCGACTCTGG-ACACT----------------------TCC--CTGA-TTG--AAAACAT------A-CTC---ACTG-G-CACGNGTG-----AA---GTGT-G-T-GC---AG----TCTGTA-TAG-T-GGAG-TG-ACAACGT-GT-T--CTG-TCGA-G-ATAC-AAATGGAG----TTTATTA-T-TTTGTTTCTTGGAT--TTAT-CAGAATA--AAG-A-GA-GTC---TAACA------TNTTTGGTA-AG-TGCACAC---CT-C-CGGTC--CCGGTAT-A----------GC---TTTCCGTA-------TTTG---------GT-ACGT----TTTC-TTGGCGAGCATGCGATGTGCAT---------------------TACATATGCA-----CCAGNATTTCGCAAG--AACT-G--------------ATTGTGA-----------ACAA-TAAGTATTTT--ATGTTCTTTGCTTATTCCATTCTAT--TA-GTAAT-------TGCTAA--------ACGATTCC-GCCGCGAT-----------------TT---TTTACATGTTACTGACA-TGCTAGTTG-CAAATA-CTTG--CA-TGTACA------CATGCACA--GTATGCAAG-AAAAGCTTC-TTTT-TNTGCATTTTCA-TC-----TACAT----TA---------TC-TAAATTTTCACTAATATTCTATTGAT-ATAC-AATAAG-TATACTGTAATT-TTGAGCAATGCATGATGTTT-----AAA-CGTG--ATTTCATT---TGTTTCTCATT-------CCCTATACATTAC-TAT-CGGAGGTG--TGCAC---GGTC-GAGTCCAGC-TAC-AAAATCAC-TCAGGTGTG---AC-AATCACTTTTG
Alignments
lowQualScore : 1 1 1 1 1 22222222222 555555555555555 11 11 11 22222 222222 444444444444 111 22222 111 222222 333333 1 1 1 11 11 111 3333333 11 1 777777777777777777777777777777777777777777777777777777777777777777777777 11 111111111 111111 111 2222 1111 44444444444444 2222222 222222 111 333333333 55555555555555555555555555 22222222 222222222 222 1111 1111 1111111 1111111 222222 111 222222222222222 22222222 222222222 1111 111 3333333333333333333333333 11111 1111 33333333333333 444444444444 11 11 11111 444444444444 555555555555555555 111 2222222222 3333 111111 222222222222222 33333333333333 1 2222222 1111 11
lowQualScore : 3 0 0 0 0 00000000000 2 2 8 999999999999999 44 33 33 00000 3 333333 8 8 111111111111 3 8 111 00000 8 8 444 333333 222222 0 0 0 0 33 33 1 666 2 2222222 33 33 3 2 3 3 6 222222222222222222222222222222222222222222222222222222222222222222222222 11 8 55 5 99 99 888888888 999999 6 111 99 3 6 6 55 0 2 5 5 66 4444 5 8 0 3333 5 4 5 5 5 5 4 5 5 3 00000000000000 5 5 5 3 77 3333333 111111 44 77 66 000 666666666 888 1 0 5 77777777777777777777777777 66 5 5 66 00000000 888 2 5 5 555555555 888 5 777 888 0000 0 5 5 5 5 5 8 5 5 77 5 5 5 5 2222 5 5 3 0000000 0 77 1 888 2222222 666666 3 5 5 000 5 5 99 5 555555555555555 88888888 222222222 5 2222 333 9 9999999999999999999999999 66666 1 6 5555 6 99999999999999 1 333333333333 1 8 88 99 0 99 66666 888888888888 6 0 6 000000000000000000 111 7 6 6 5 77 2 4444444444 3 0000 5 5 5 1 33 5 555555 111111111111111 5 0 3 44 5 5 5 1 9 5 00000000000000 0 5 0 77777 2 1111111 5 5 5 66 0 4444 4 22 5 33 5 888 5
lowQualScore : . . . . . ........... . . . ............... .. .. .. ..... . ...... . . ............ . . ... ..... . . ... ...... ...... . . . . .. .. . ... . ....... .. .. . . . . . ........................................................................ .. . .. . .. .. ......... ...... . ... .. . . . .. . . . . .. .... . . . .... . . . . . . . . . . .............. . . . . .. ....... ...... .. .. .. ... ......... ... . . . .......................... .. . . .. ........ ... . . . ......... ... . ... ... .... . . . . . . . . . .. . . . . .... . . . ....... . .. . ... ....... ...... . . . ... . . .. . ............... ........ ......... . .... ... . ......................... ..... . . .... . .............. . ............ . . .. .. . .. ..... ............ . . . .................. ... . . . . .. . .......... . .... . . . . .. . ...... ............... . . . .. . . . . . . .............. . . . ..... . ....... . . . .. . .... . .. . .. . ... .
lowQualScore : 3 0 0 0 0 88888888888 5 5 8 222222222222222 22 88 88 88888 8 000000 0 0 000000000000 8 0 888 00000 0 2 888 000000 222222 0 0 8 0 88 88 0 555 0 5555555 88 55 5 5 2 3 7 000000000000000000000000000000000000000000000000000000000000000000000000 00 0 88 0 22 22 000000000 222222 7 777 22 8 7 7 66 1 4 7 7 44 3333 7 6 1 0000 7 3 7 7 7 7 9 0 0 4 88888888888888 0 0 0 2 99 6666666 444444 33 99 99 222 666666666 555 4 7 7 77777777777777777777777777 99 0 0 99 22222222 888 2 0 0 444444444 888 0 444 888 6666 1 0 0 0 7 7 9 7 7 99 7 7 7 7 1111 7 7 0 1111111 7 99 4 000 4444444 444444 0 7 7 000 7 7 22 7 444444444444444 11111111 999999999 7 1111 777 3 3333333333333333333333333 77777 0 3 0000 7 22222222222222 7 222222222222 4 0 66 00 8 22 77777 333333333333 7 7 7 000000000000000000 777 3 7 7 7 99 0 8888888888 2 8888 0 0 0 0 22 0 666666 888888888888888 0 4 6 33 7 7 7 4 3 0 66666666666666 0 0 4 88888 0 4444444 0 0 0 99 2 8888 4 44 0 88 0 888 0
consensus : NGGAAGCTTACAAGCATTCAAT-AATACAGATTATTTTAAAA-TT-TG-GATTGACAATATG-CAGTACTTAGCG-AA-ACCTATATATACACTAG--TATGCATGATG--TTGCG-TTGATGTT--TAT--TTGAAATCAT-A---ATTAGAAGA------AAAACAAAA-TA-T------------TAG-TTT--GG-----ACCT-AACATA--TTCA------AATGTA-A----TCATTGGGA-G-TTTATTGAAGT-GCAA--GATATTC--TAATTANATGTATGAT-AATTCGTTC-------TTA--CTGCTTGTATTTAGAG-AAACGTGCACGTAGCATGTAGCANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAATGAATACACAATATACAN-ATGTGCAT-GCAAGGTGACTGT--AAATAA--TTATGTG----A-TT-CCAAAGAG------ACAACAA-AT---TT--TGAAAGATGAA-TTTCATTTTCGTTTATATACCGTATATTTTCACCTAG-ATGTA-TACTTCCG-AT----AT-TGTATGTAATCATATGTACATTTTC---AATC-GTATCTGCAATATT-A-TAA-TA-TCATAACAGA-TGT-TCGGTGTCGATAACCAACCA----C--ACACATGCATGATCAGA-TTCC-TGA-TTTCTGT--AAAC-T-----GCAAA-A--C-TCGGAC--CAT--TCAA--GCATNCA--A---TGTAGGAAAAA-TATTCGACTCTGG-AC-----------AC-T-----------TCC--CT-GA-TTG--AAAACAT------A-CTC---ACTG-G-CACGG---GTG--AA---GTGT-G-T-GC---AG----TCTGTA-TAG-T-GGAG-TG-ACAACGT-GT-T--CTG-TCGA-G-ATAC-AAATGGAG----TTTATTA-T-TTTGTTTCTTGGAT--TTAT-CAGAATA--AAG-A-GA-GTC---TAACA------TNTTTGGTA-AG-TGCACAC---CT-C-CGGTC--CCGGTAT-A----------GC---TTTCCGTA-------TTTG---------GT-ACGT----TTTC-TTGGCGAGCATGCGATGT---------GCAT------------TACATATGCA-----CCAGNATTTCGCA-AG-AACT-G--------------ATTGTG----------A-ACAA-TAAGTAT-TTTA-ATGTTCTTTGCTTATTCCATTCTAT--TA-----GTA-----A------TTGCT-AAACGATTCC-GCCGCGA-------T----------TT---TTTACATGTTACTGACA-TGCTAGTTG-CAAATA-CTTG--CATGTAC-----A----CATGCACGAA-GTATGCAAG-AAAAGCTTC-TTTT-TNTGCATTTTCA-TC-----TACAT----TA---------TC-TAAATTTTCACTAATATTCTATTGAT-ATAC-AATAAG-TATACTGTAATT-TTGAGCAATGCATGATG--TT-T--AAA-CGTG-ATTTCA--TT-TGTTTCTCA------T-T-CCCTATACATTAC-TATCGGAGGTG--TGCA--C-GGTC-GAGTCCAGC-TA-NAAAATCAC-TCAGGTGTG---AC-AATCACTTTTG
Reference ( family-362 ) : NGGAAGCTTACAAGCATTCAAT-AATACAGATTATTTTAAAA-TT-TG-GATTGACAATATG-CAGTACTTAGCG-AA-ACCTATATATACACTAG--TATGCGCGATG--TTGCG-TTGATGTT--TAT--TTGAAATCAT-A---ATTAGAAGA------AAAACAAAA-TA-T------------TAG-TTT--GG-----ACCT-AACATA--TTCA------AATGTA-A----TCATTGGGA-G-TTTATTGAAGT-GCAA--GATATTC--TAATTANATGTATGAT-AATTCGTTC-------TTA--CTGCTTGTATTTAGAG-AAACGTGCACGTAGCATGTAGCANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAATGAATACACAATATACAN-ATGTGCAT-GCAAGGTGACTGT--AAATAA--TTATGTG----A-TT-CCAAAGAG------ACAACAA-AT---TT--TGAAAGATGAA-TTTCATTTTCGTTTATATACCGTATATTTTCACCTAG-ATGTA-TACTTCCG-AT----AT-TGTATGTAATCGTATGTACATTTTC---AATC-GTATCTGCAATATT-A-TAA-TA-TCATAACAGA-TGT-TCGGTGTCGATAACCAACCA----C--ACACATGCATGATCAGA-TTCC-TGA-TTTCTGT--AAAC-T-----GCAAA-A--C-TCGGAC--CAT--TCAA--GCATNCA--A---TGTAGGAAAAA-TATTCGACTCTGG-AC-----------AC-T-----------TCC--CT-GA-TTG--AAAACAT------A-CTC---ACTG-G-CACGN---GTG--AA---GTGT-G-T-GC---AG----TCTGTA-TAG-T-GGAG-TG-ACAACGT-GT-T--CTG-TCGA-G-ATAC-AAATGGAG----TTTATTA-T-TTTGTTTCTTGGAT--TTAT-CAGAATA--AAG-A-GA-GTC---TAACA------TNTTTGGTA-AG-TGCACAC---CT-C-CGGTC--CCGGTAT-A----------GC---TTTCCGTA-------TTTG---------GT-ACGT----TTTC-TTGGCGAGCATGCGATGT---------GCAT------------TACATATGCA-----CCAGNATTTCGCA-AG-AACT-G--------------ATTGTG----------A-ACAA-TAAGTAT-TTT--ATGTTCTTTGCTTATTCCATTCTAT--TA-----GTA-----A------TTGCT-AAACGATTCC-GCCGCGA-------T----------TT---TTTACATGTTACTGACA-TGCTAGTTG-CAAATA-CTTG--CATGTAC-----A----CATGCAC--A-GTATGCAAG-AAAAGCTTC-TTTT-TNTGCATTTTCA-TC-----TACAT----TA---------TC-TAAATTTTCACTAATATTCTATTGAT-ATAC-AATAAG-TATACTGTAATT-TTGAGCAATGCATGATG--TT-T--AAA-CGTG-ATTTCA--TT-TGTTTCTCA------T-T-CCCTATACATTAC-TATCGGAGGTG--TGCA--C-GGTC-GAGTCCAGC-TA-CAAAATCAC-TCAGGTGTG---AC-AATCACTTTTG
gi|1 : GGAAGCTTACAAGCATTCAATTAATACAGATTATTTTAAAA-TT-TG-GATTGACAATATG-CAGTACTTAGCGAAA-ACGTATATATACACTAGTATATGCATGA-G--TTGCGTTTGATGTT--TAT--TTGAAATCAT-A---ATTAGAAGA------AAAACAATA-GA-T------------TAGTTTT--GG-----ACCT-AATATA--TTCA------AATATAGA----TCATTGAGA-GTTTTATTGAAGT-GCAA--GATATTG--TAATTCTATGTATGAT--ATTCATTC-------TTA--CTGCTTGTATTTAGAGAAAACGTGCACATA-CATGTAGCA
gi|1 : AATATACATTATGTGTAT-GCAA--TGACTGT--AAATAA--TTATGTG----A-TTTCCAAAGAG------ACGACAATAA---TT--TGAAAGGTGAA-TTTCATTTTC-----TATACCGTATATTTTCACCTAG-ATGTAATACTTCCG-ATCATTAT-TGTATGTAACCATATGCACATTTTG---AATT-GTATCTGCAATATT-A-TAA-AA-TCAGAGCAGAATGTGTCAGTGTCGATAACCAACTA----C--A----TGCATGATCAGA-TTCCCTGAGTTTCTGT--AAACCT-----GCAAA----C-TCGG-CGACAT--TCAA--GC-----------TGAAGGAAAA--TATTCGACTCTGG-AA-----------CC-T-----------TCC--CT-GA-TTG--AAAACGT------A-CTC---ACTG-G-CACGA----TG--AA---GTGT-G---GC---AG----CCTGTA---G-T-GGAG-TG-ACAAAGT-GG-T----G-TCGACG-ATAC-GAATGGAG----TTTTTT--T-TTTGTTTCTTG-AT--TTAT-CAGAATA--A-G-A-GA-GTC---TAACA------TTTTTGGTA-AG-TGCACAT---CT-C-CGGTC--CCGGTAT-A----------AC---TTTCCGTA-------TTTT---------GT-GCGT----TTTC-TTAGCGAGCATGCGATGTTTTTAGCGAGCATGCGATGTGCATATACATATGCA-----GCAGCATTTCGCA-A--AACT-GAAATTGAAATAATAATTGTG--------------AA-TAAGTAT-TTTA-ATGTTCTTTGCT------AGTGT-----------GTA-----A------TTGCA-AAATGATTTC-ACCG-GA-------TTTTTTTTTTCTT---TTTACATGTTATTGACA-TGATAGTGG-GAAATA-CTTG--CATGTACACTGTA----CATGCACGAA-GTATGCAAG-AAAAGTTTC-TTTT-TCTGCATTGTCA-TC-----TACAT----TA---------TC-T-AATTTTCACTAATATTCTATTGATGATAC-AATAAGTTATATTGT-ATT-TTGAGCAATGC--------------AAA-CGTG-G-----------ATTTCCCC------T-T-CCCTAAACATTAC-TATCGGAGGTG--TGCA--CTGGTC-GAGTACAAC-TAGAAAAATCAC-TCAGGTGTG---AC-AATCACTTTTGnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngtttgtcaatgaatatacattatgtgtatgcaatgactgtaaataattatgtgatttccaaagagacgacaataatttgaaaggtgaatttcattttctataccgtatattttcacctagatgtaatacttccgatcattattgtatgtaaccatatgcacattttgaattgtatctgcaatattataaaatcagagcagaatgtgtcagtgtcgataaccaactacatgcatgatcagattccctgagtttctgtaaacctgcaaactcggcgacattcaagctgaaggaaaatattcgactctggaaccttccctgattgaaaacgtactcactggcacgatgaagtgtggcagcctgtagtggagtgacaaagtggtgtcgacgatacgaatggagttttttttttgtttcttgatttatcagaataagagagtctaacatttttggtaagtgcacatctccggtcccggtataactttccgtattttgtgcgttttcttagcgagcatgcgatgtttttagcgagcatgcgatgtgcatatacatatgcagcagcatttcgcaaaactgaaattgaaataataattgtgaataagtattttaatgttctttgctagtgtgtaattgcaaaatgatttcaccggattttttttttctttttacatgttattgacatgatagtgggaaatacttgcatgtacactgtacatgcacgaagtatgcaagaaaagtttctttttctgcattgtcatctacattatctaattttcactaatattctattgatgatacaataagttatattgtattttgagcaatgcaaacgtggatttccccttccctaaacattactatcggaggtgtgcactggtcgagtacaactagaaaaatcactcaggtgtgacaatcacttttgg
gi|10 : ggaagcttacaagcattcaattaatacagattattttaaaatttggattgacaatatgcagtacttagcgaaaacgtatatatacactagtatatgcatgagttgcgtttgatgtttatttgaaatcataattagaagaaaaacaatagattagttttggacctaatatattcaaatatagatcattgagagttttattgaagtgcaagatattgtaattctatgtatgatattcattcttactgcttgtatttagagaaaacgtgcacatacatgtagcannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngtttgtcaatgATGTAC-----ATGAACATGCACGAA-GTATGTAAG-AAAAATTTCCTTTT-TCTGCATTTTCA-TC-----TACAT----TA---------TC-TAAATTTTCACTAATATTCTAT--A----AC-AATAAA-TAT-TTGCGCTTGTTGAGCAATGC--GAGG---------AA-CGTG-ATTTTA--TTATGTTTCTCG------TGTACCCTATACATTACTTATCGGA-ATGATTGCAGCT-GGTC-GAGTCCAAG-CA-GAAAATCTCTTCAGATGTGACCAC-AATCACTTTTGg
gi|11 : TTCATAT----TATATTTTCACCCAG-ATTT--TAATTCCT-ATCATTAT-TGTATGTAATCGTGTTTAAAT-------AATCTGTA-----AATTTTCA-TAA-TATTCA-AACATA-TGT-CCAGT--------------A----C--GTAAATATATGATCAGCTTTCC-TAA-TCTCTGT--AAA---------CAAATA--A-TTG-----CAT--GCA----TATACA--AGTGTGCAAGAAAAA-gt
gi|12 : ttgcaaaggcgtgaagatccatttaaaaaaataaAAATA-ATTG--CATG--C-----A----TATACA---A-GTGTGCAAGAAAAAAC--C-TTTT-CTTAC--TTTCT-TC-----GGAAT----GA---------TC-TTAACTTTCA--AA-A-TCT-----T-ATAC-A--CAG-TATAC-GC--TT-TTAAACAATATATGACG--TTAT--GAATCGTT-ATTTCA--GT-TGTTTATCA------T-A-CATTATACA--------CGTAGGTG--TACAT-T-GGTC-GAG------------------C-GCAGGTGTG---AC-AAT
gi|13 : C-T-----------CTC--AT-GA-TTG--AAGACA---------------GCTG-G----------TT--TA---GTGT-G-TCGC---AG----TTTGTA-TAA-T-GGAG-TT-ACAATAT-AT-TTTCTG-TCGG-A-ATAC-AAATGGAG----TTTATCA-C-CTAATTTGTGGAAT--T--C-CA-AATA--GAGTG-GA-A-----TAACG------CTTCCGGTT-AG-AACACAT---TT-C-aaactctgg
gi|14 : tAGA-TGT-TCGGAGAAGAAAACCAACC-----------C---TATG--CAGA-TTCC-TGA-TT-CTAT--AAAC-T-----GCAAA-A--CACCTGAC--CAG--TCAA--GCATTCA--A---TCTAC-AAATA-TATTCGACTCAGA-AC-----------A--------------TCC--CT-AA-TTGGAAAAAAAT------A-CTT---ACTG-G-CACTG---GTG--AA---ATGT-GTT-GT---AA----TCCGTA-TAA-T-ggcaagaaaaacatttccggttcgctacagttgtcccag
gi|15 : tGAA-TTTCATTTTCCTTTGTAAGCCGTATATTTTCACCTAG-ATGTA-TACTTCCG-AT----AT-TGTATGTAATCATATGTACATTTTC---AATC-GTATCTGCAATATT-A-TAG-TA-TCATAACAGA-TGT-TCAGTGTCGATAACTAAC----------CACATGAATGATCAGA-TTCC-TGT-TTT
gi|16 : ATTTTAAAAGTT-TG-AATTGGCAATATG-CAGCA------------------TATA---TAG---------GAT---TTGCA-TTGATGTT--TATATTTGAAATCAT-G---ATTAGAAGT------AAAACAAAA-TA-T------------TAG-TTT--GG-----ACAC-AAGATG--TGCA------a
gi|17 : AATATATAA-AAGTGCAT-GCAAGGTGAATGT--CAGTAA--TTATGTG----A-T------AGAG------ACAACAA-AT---TT--CGAGAGATGAA-TTTTATGTTTGCTTATA-ATAGTGTGTTTTTGCCCAATATGT
gi|18 : aATT-TTCAGCAGCACAGGATG--TT-T--TAA-AATA-AATGCA--CG-TGCATCTTACCGGTAT-T-TCTTATGCATTAC-TGTTTGAGATG--CACA--C-GATC-
gi|19 : AG-ATGTGCATTGCAAGGTGACTGT--AAATAA--TTATGTG----ATTT-CCAAAGAA------ACAACAA-AT---TT--TGAAAG
gi|2 : aGAAAGCTTACAAGCATTCAAT-AATACAAATTATTTTAAAA-GTGTG-GATTGACAAAATG-CGGTACTTAGCG-AATACCTATATATACACTAG--TATGCATGATGAGTTGCT-TTGATCTT--TAT--TTGAAATCATCATGCATTAGAAGA------AAAACATAA-TA-T------------T-G-TTTTGGG-----ACCT-AA-ATAAATTCA------TATGTA-A----TCATTGGGA-G-TGTATTGAAGT-GCAA--GATATTC--TAATTATATGTATAAT-A-TTCATTC-------TTA--CTACATGTATTTAGAG-AAACGTGCACGTAGCANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAATGAATACACAACACACAT-ATGTGTAT-GCAAGGTGA-TGT--AAATAA--GTATGTG----T-TC-CCAAAGAG------ACACCGA-ATGCATT--GAAAAGATGAA-TTTCATTTTCGTTTATATACCGTATATTTTCACCAAG-ATGTA-TACTTCCG-AT----AT-TGTATGTAACCATATGTACATTTTG---AATT-GTATCTGCAATATT-G-TAA-TA-TCAGAGCAGA-TGT-TCAGTGTCGATAGCCAACTA----CGTATACATGCATGATCAGA-TTCC-TGA-TTTCTGT--AAAC-T-----GCAAA----C-TCGGAC--CAT--TCAT--GCAAGC-------TGAAGGAAAAA-TATTCGACTCTGG-AC-----------ACCT-----------TCC--CT-GA-TTG--AAAACGT------A-CTC---ACTG-G-CATGG---GTG--AA---GTGT-G---AC---AG----TCTGTA-TAG-T-GCAG-TG-ACAAAGT-GT-T--CTG-TCGA-G-ATAC-TTTTGGAG----TTTATTA-T-TTTGTTTCTTGGAT--TTAT-CAGAATA--AAG-A-CA-GTC---TAACA------TATTTGGTA-AG-TGCACAT---CT-C-CGGTC--CCGGTAT-A----------AC---TTTCCGTA-------TTTG---------GT-GCGT----TTTC-TTAGCGAGCATGTGATGT---------GCAT------------TACATATGCA-----TCAGCATTTCGCA-AT-AACT-G--------------ATTGTG----------A-ATAA-TAAGTAT-TTTAAATGTTCTTTGCTTATTCCATTCTAT--TA-----GTG-------------TGTT-AAATGATTTC-GCCGCGA-------T----------TT---TGTACATGTTATTGACA-TGATAGTGG-CAGATA-CTTG--CATGTACATGA-A----CATGCACGAA-GTATGCAAG-AAAAGTTTC-TTTT-TCTGTATTTTCA-TC-----TACAT----TA---------TC-TAAATTTTCACTAATATTCTATCGAT-ATAC-AATAAG-CATATTGTGATT-ATGAGTAATGC--------------AAA-CGTGAATTTCAATTT-TG-TTCTCAT-----T-T-CCCTATACATTAC-TATCGGAGATG--TGCA--T-GGTC-GAGTCCAGC-TA-AAAAATCAC-TCAGGTGTG---AC-AATCACTTTTG
gi|20 : g--C-GGTT-GAGTCTAGA-TA-CAAAGTCAA-TCAGGTGTG---AC-AATC
gi|3 : acAT-A---TTTAGAGGAGTGGGTAAAACAAAAATAAT------------TAG-TT----G-----ACCT-AACAC---TTCAGGATGTAATGTA-ACCACTCATTGAGATG-TCTATGTAAGTTGCAACGAATATACCATAATTAGATGTATGATAAATTCATTC-------TTA--C-----GTA-TTAGTG-ATTTATGCACGTAGCAT
gi|3 : tTGAGCTT-GCA--GTGACTGTTTAAATAAGATGATGTGGGGGA-TC-CAAAGGAGGAGACAACAACAA-AT---TTCTTGAAAG-TGAAATTTCATTTTCCTTTGTTAACCGTAT---------------GTA-TACTTCCG-AT----AT-TGTATGT--TCATATATACATTTTTCAAAATC-GTATCTGCACTATT-ATTAATTA-TCATAACAGA-TGT-CAGGTATCGATAA-CAACCA----ctcctttctttaannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncctatcggcctcctctcctcttcgtactccctctcctctcaccttctccttcgtctcctgttttgtcatgtctatgtatacaaagtatgtgctatttgaatggtgagcttgcagtgactgtttaaataagatgatgtgggggatccaaaggaggagacaacaacaaatttcttgaaagtgaaatttcattttcctttgttaaccgtatgtatacttccgatattgtatgttcatatatacatttttcaaaatcgtatctgcactattattaattatcataacagatgtcaggtatcgataacaaccaaattcagcgtttgtcaatcgcatcatatagtgaaaatcttccactgacccctcgagaaaacatgaccgtactcattggcacggaaagtgtagcccagtttgatagctggagtgacaagtgttctgtcgagatacaaatggaggttctttattattttgttctttgcattttttgctaaggtgtagacatgctcacgttttaccggtatattctttcgttatggtacgttttctttggcgtgcattacatatgcatttttatgcgacgatccagtatttgcacccaactagactgtgttctgtggccatataattaagcatttatgttctttgcttattccattattaggtatgtaatttgctaaatgattttgccgcgatttctatttacatgtcactaacatgctagttgccaaataccttggccattgtacatgccacgtatgcaagaaaatcttctatttttgttgaacatttcataatttatcactaatatt
gi|3 : tatatttagaggagtgggtaaaacaaaaataattagttgacctaacacttcaggatgtaatgtaaccactcattgagatgtctatgtaagttgcaacgaatataccataattagatgtatgataaattcattcttacgtattagtgatttatgcacgtagcatctcctttctttaannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncctatcggcctcctctcctcttcgtactccctctcctctcaccttctccttcgtctcctgttttgtcatgtctatgtatacaaagtatgtgctatttgaatgg--TCAATCGCATC----A---TATAGTGAAAA-TCTTCCACT---G-AC---------------------------CC--CTCGA---G--AAAACATGACCGTA-CTC---ATTG-G-CACGG---A----AA---GTGTAG-C-CC---AG----TTTG-A-TAGCT-GGAG-TG-ACAA-GT-GT-T--CTG-TCGA-G-ATAC-AAATGGAGGTTCTTTATTA-T-TTTGTTCTTTGCAT--TT----------------------------------------TTTGCTA-AGGTGTAGACATGCT-CACGTTTTACCGGTAT-A----------TT---CTTTCGT--------TATG---------GT-ACGT----TTTCTTTGGCGTGCATTACATAT---------GCAT------------T-TTTATGCGACGATCCAGTATTT-GCACCC-AACTAG--------------ACTGTGTTCTGTGGCCATATAATTAAGCA--TTT--ATGTTCTTTGCTTATTCCAT--TAT--TAGGTATGTA-----AT-----TTGCT-AAATGATTTT-GCCGCGA-------T----------TTCTATTTACATGTCACTAACA-TGCTAGTTGCCAAATACCTTGGCCAT-TGT-----A----CATGC-C--ACGTATGCAAG-AAAATCTTC-TATT-TTTG----TTGA---------ACAT----T----------TCATAATTTATCACTAATATTaattcagcgtttgtcaatcgcatcatatagtgaaaatcttccactgacccctcgagaaaacatgaccgtactcattggcacggaaagtgtagcccagtttgatagctggagtgacaagtgttctgtcgagatacaaatggaggttctttattattttgttctttgcattttttgctaaggtgtagacatgctcacgttttaccggtatattctttcgttatggtacgttttctttggcgtgcattacatatgcatttttatgcgacgatccagtatttgcacccaactagactgtgttctgtggccatataattaagcatttatgttctttgcttattccattattaggtatgtaatttgctaaatgattttgccgcgatttctatttacatgtcactaacatgctagttgccaaataccttggccattgtacatgccacgtatgcaagaaaatcttctatttttgttgaacatttcataatttatcactaatatt
gi|4 : tatatttagaggagtgggtaaaacaaaaataattagttgacctaacacttcaggatgtaatgtaaccactcattgagatgtctatgtaagttgcaacgaatataccataattagatgtatgataaattcattcttacgtattagtgatttatgcacgtagcatctcctttctttaannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncctatcggcctcctctcctcttcgtactccctctcctctcaccttctccttcgtctcctgttttgtcatgtctatgtatacaaagtatgtgctatttgaatggtgagcttgcagtgactgtttaaataagatgatgtgggggatccaaaggaggagacaacaacaaatttcttgaaagtgaaatttcattttcctttgttaaccgtatgtatacttccgatattgtatgttcatatatacatttttcaaaatcgtatctgcactattattaattatcataacagatgtcaggtatcgataacaaccaaattcagcgtttg--AAATAA--TTATGTG----A-TT-CCAAAGAA------ACAACAA-AT---TT--TGTAAGATGAA-TTTCATTTTGGTTTATATATCGTATATTTTCACCTAG-ATGTA-TAATTCCC-AT----AT-TGTATGTAATCATATGTACATTTTC---AATC-GTATCTG-AATAAT-A-T-A-TA-TCATAATAGA-TGT-TCGGTGTCGATAATTAAC----------CACATGCATGATCAGA-TTCC-TGA-TTTCTGT--AAAC-T-----GCAAA-A--C-TCGGAC--CAC--TCAA--GCATTCAATA---TATACGAAAAC-TATTCCACTCTGG-AC-----------AT-T-----------TCC--CT-GA-TTG---AAACAT------A-CTT---A-TG-G-CACGT---GGC--AA---GTGT-G---GC---AG----TCTGTA-TAG-T-GGAG-TG-ACAACGT-GT-T--CTG-TCGA-G-ATAC-AAATGGAG----TTTATTA-T-TTTGTTTCTTGGAT--ATAT-CAGAATA--AAG-A-GA-GTC---TAACA------TA-TTGGTA-AG-TGCACAC---CT-C-C-GTC--CCGGTAT-A----------GC---TTTTCGTATTGCCATTTTA---------GT-ACGT----TT---TTGGCGAGCATGCTATGT---------GCAT------------TACATGTGCA-----CCAGGATTTTGCA-AG-AACT-G--------------ATTGTG------------ACAA-GAAGTA--TTT--ATGTTCTTTGCTTATTCCATTCTATAGTA-----GTA-----A------TTGCT-AAACGATTCC-GCCGCGA------------------TT---TTTACATGTTAC-GACA-TGCTAGTTG-CAAATA-CTTA--CAGGT-------A----CATGCAC----GTATGCAAG-AAAAGCTTC-TTTT-TGCGCATTTTCA-TCTAAATTACATATTGTA---------TC-TAAATTTTCAATAATATTTCATTGAT-ATACAAATAAG-TATACGTTAATT-TTGAGCAATGCATGATG--TT-T--AAAGCGTG-ATTTCA--TT-TGTTTCTCA------T-T--CCTATACATTAC-TATCGGAGTGG--TGCA--CTGGTC-GAGTTCAGC-TA-CAAAATCAC-TCAGGTGTG---AC-AATCAATTTTG
gi|5 : TGTA-TACTTCCCCAT----ATGTGTA-GTAATT-CATG-ACATTTTC---AATC-GTATCTGAATTAAT-A-TAA-TA---ATAATAGA-T-T-TCGTTGTCGATAATTAACCA----C--A----TGCATGATCAGA-TTCC-TGA-TTTCTGTGAAAAC-------GCAAA-AAAC-TCGGAC--CACCGTCAA--GCATC----A---TATAGGAAAAAATATTCCACTCTG--AC-----------AT-T-----------TCC--CT-GA-TTG--AAAATAC------AACTCCAAATTTTG-CCCCCCCCGTGGCAA---GT-T-G---GC----G----TCTGTA-TAG-T-GGAGCTG-ACAACGTTGTCT--CTG-T--G-G-ATACCAAATGGAG----TT-ATTA-T-TTGATTTCTTGGAT--ATAT-CAGAATT--AAG-A-GA-GTC---TAACATACATGTATTTGTCA-AG-TGCACAC---CT-C-CGGTC--CCGGAATCA----------GC---TTTTCGTA-------TTTGCCATCTTTAGT-ACGT----TT---TTGGCGAGCATGC-ATGT---------G-A--------------ACATGTGCA-----CCAGGGATTTGCA-AGAAACT-G--------------A-TGTG----------A-
gi|6 : gatT-A----------GC---TTTCCGTT-------TTTG---------GA-ACGT----TTTA-GTGGCGAGCATGCAATGT---------GCAT------------TACATATGCA-----CCAGTATTTTACA-AG-AAAT-G--------------ATTGTG----------A-ACAA-TAAGTATGTTT--ATGTTCTTTGCTTATTCCATTCAAT--TA-----GTAT----ATGTAACTTGCT-AAATGATCCC-ATCGCGATATTTTTT----------TT---TTTACATGTTACTGACA-TGCTAGTTG-CAATTA-C-TG--CATGTAC-----A----C--GCAC----GTATGCAAG-AAAAGCTTC--TTT-TGTGCA-----A-TC--------------TA---------TC-TAAATTACCACTAATATTCTATTTAT-ATAC-AATACG-TATACTGTAATT-TTGAGCAATACATACTG--TT-TTAAAA-CGTG-ATTTCA--TT-TGTTTCTCA------T-T-CCCTATGCATTAC-TATCGGAGGTG--TGCA--C-GGTC-GAGTTCAGC-TA--AAAATCAC-TCGGGTGTG---AC-AATTACTTTTG
gi|7 : CAACCATGGTC--ACACGTGTAAAATCGGA-TTCC-TGA-TT-CTGT--AAAC-CTCTTGGCATA-A--G-TCACGC--AAT--TT-----CATA-A--T---TGTAGGAAA---T-TCCGACTCTGGTACGTGATTGAAAAAC-TCGCTATGTTAGTCCTGCT-GAATTG--AAAACATT-----G-CTC---ATTG-GGCACGA---G-G--AACAAGTGT-G-T-GCTCCAGATACCCTGGAGTAT-TCGGAG-TGTACA-TGT-TT-T--CTGCTCGA-GTATAC-AAATGAGA----TTTATTAATATTTGTTTCTTGGATATTCATACAGAATATAAAG-ATGACGTTAGATAACACTA---TTTCTGGTATAG-TGCACAC---CTTC-CGGTC--CCGGTAT-ATCTGAAAAATGCTTGTTCCCGTATG-----TTTG---------GTGACGCGTAATTTT-TTGGCGAGCAggg
gi|8 : aTCTAT--TA-----GTATGTTAA------TTGCTTAAACGATTCCCGCCTCGA-------T----------TT---ATTACATGTTAC-GACAATGC-AGTTG-CAAATA-CTTA--CAGTTAC-----A-----ATGC-C--G---ATGCAAG-AAAGGCTTC-TTTTATGCGCATTTTCAATC-----TAAAT----TACATATTGAATC-TAAATT--CACTAATATTCTATTGAT-ATAC-AATAAG-TATACTGTAATT-TTGAG-AATGCATGATGTTTT-T--AAA-CGTG-ATTTCA--TT-TTGTTCTC-------T-T-CCCTATAC-TTAC-TTTCGGAGGTG--T-CA--C-TGTCGGAGGTCAGCTTA-CAAAATCAC-TCAG--GTG---ACGAATCACTTTTG
gi|9 : AACTTACAAGCATTCAAA-AATGTCGCTTAATTTGATA-TT-TTCAATTGATAATATGGCAGTAAGT-GCG-AA-ACCTATATATACA-------------GACG--CTGTA-TCGGTGTTAATAT--TTAAACTCAC-C---ATTAGA-GA------AAAACAAAA-TA-TATTTAGTATATTTGG-TTT--GGTCTAGACTTTAACATA--TCAA------AATGTA-AA---TCATAGGGA-G-TTTATTGAAGT-GCAA--GGTATTC--AAATTAACTATACAAC-AATTTGTTCACCGGATTTAAGCTGCTT-TGTTTAga