lowQualScore : 111 1111111 1111111 111111
lowQualScore : 1 1 1 1 1 11 1 1 11 333 11 8888888 22 222 0000000 22 1 1 111111 2
lowQualScore : . . . . . .. . . .. ... .. ....... .. ... ....... .. . . ...... .
lowQualScore : 2 1 1 1 1 44 1 1 55 555 55 2222222 77 000 9999999 77 2 6 000000 1
consensus : TGTCTC-CCC-TC-TTC-CA-GG--GGGA-G-A--C--AT--AT----T--G--T---TTT-T-----GT--ACTT-TCTGT-C-----CG-TCTG
Reference ( gi|15 ) : TGTCTC-CCC-TC-TTC-CA-GG--GGGA-G-A--C--GT--AT----A--G--T---TTT-C-----GT--ACTT-TCTGT-C-----TG-TCTG
gi|8 : TGTCTTTCCC-TC-TTC-CA-GG--GGGA-G-A--C--AT--AT----T--G--T---TTT-C-----GT--GCAT-TCTGT-C-----
gi|27 : attaTGTCTC-CC--TC-TTC-CA-GG--GAGA---A--C--AT--AT----T--G--T---TTT-T-----GT--ACTT-TCTGT-C------G-TCTGcat
gi|24 : TGTCTC-CCC-TC-TTC-CA-GG--A--A-G-A--C--AT--AT----T--G--T---TTT-C-----AT--ACTT-TCTGA-C-----CG-TCT
gi|36 : aTGCCTC-CCC-TC-TTC-CA-GG--GGGA-GAA--C--AT---T----G--G--T---TTT-C-----GT--ACTT-TCT
gi|31 : TGTCTC-CCC-TC-TTC-CA-GG--GGGA-A-A--C--ATAAAT----T--G--T---TTT-------GT--ACTT-TTTGT-C-----tga
gi|22 : aTGTCTC-CC--TC-TTC-CA-GG--GAGA---A--C--AT--AT----CT-G--T---TTT-T-----GT--ACTT-TCTGT-C------G-TCTG
gi|9 : TGTTTC-TCC-T--TTC-CA-GG--GG-A-G-A--C--AT--AT----T--G--C---TTT-C-----GT--ACTT-TCTGG-C-----CG-TCTG
gi|5 : ttaTGTCTC-TC--TC-TTC-CA-AG--GGGA-G-A--C--AT--AT----T--G--T---TTT-C-----AT--ACTT-TCGGC-CCTCAGTG-TCTGt
gi|28 : taTGTCTC-TCC-TC-TTC-CA-TG--GGGA-G-A--CTATT--AT----T--G--T---TTT-T-----AT--ACTT-TTTGT-C-----
gi|37 : gTGTTTC-CCC-TC-TTC-AT-GG--GGGA-G-A--C------AT----T--G--T---TTT-T-----GT--ACTT-TCTG
gi|38 : TATCTC-CCC-TC-TTT-CA-GG--GGAA-A-A--C--AT--AT----T--G--T---TTT-G-----GT--ACTT-gtcg
gi|55 : ttaTGTCAC-CCC-TC-TTC-CA-GG--GGGA-G-A--C------AT----T--G--C---TTT-T-----GT--ACTcga
gi|58 : TGTCTC-CCC-TC-TTC-CA-GG--GGGA-G-A--C--AT--GT----
gi|57 : attaTGTTTC-CCC-TC-TTC-CA-GG--GAGA-G-A--C--AT--AT----A--tt
gi|4 : taTGTCTC-CCCCTCATTC-CA-GG--GG-A-G-A--C--AT--AT----T--G--T---TTT-TTATTGGT--ACTT-TCTGCGC-----TG-ttgt
gi|34 : tttaTGTCTC-CCC-TC--TC-CA-GG--G----A-A--C--AT--AT----T--G--T---TTT-------G---ACTT-TCTGT-C------G-TCTG
gi|13 : tcTGTCTC-TCC-TC-TTCGCA-GG--GGGT-G-A--C--AT--AT----T--GT-T---TTT-T-----GTCAGCTT-TCTG
gi|1 : taTGTCTC-GCC-TC-TAC-CACGG--GGGA-G-G--A--GT--AT----A--GGATTGATTT-T-----GT--A-TT-TCTGT-C-----TA-TCgcg
gi|18 : aTGTCAC-TCC-CC-TTC-AA-GG--G--A-G-A--A--GC--AT----T--G--T---TTT-T-----GT--ACTT-TCTGT-C-----CATTCTGgtgtctatttggccggt
gi|19 : TGTCAC-ACC-TC-TCT-CA-AG--GGGA------C--AT--AT----T--G--T---TTT-------GT--ACTT-TATGT-C-----AG-TCTG
gi|56 : taTGTCTC-CCC-TC-TTC-CA-GG--GGGA-
gi|21 : atattaGTCTC-ACC-TT-TCC-CA-GG--AGGA-G-A--C--AT--AT----T--G--T---TTT-T-----GT--ACTT-TCTGT-C-----TG-TCTagttgtttt
gi|43 : GTCTC-CCC-TT-TTC-CA-AG--GGGA-G-A--C--AT--TT----------T---TTT-T-----GT--ACTT-TCTGT-C-----
gi|52 : GTCTC-CCC-TC-TTC-CA-GG--GGGA-G-A--C------AT----T--G--T---TTT-T-----GT--TCTT-T
gi|54 : GTCTT-CCC-TC-CTC-CA-GG--GGGA-G-A--C------AT----T--G--C---TTT-T-----AT--TCTT-T
gi|53 : GTCTT-CCC-TC-CTC-CA-GG--GGGA-G-A--C------AT----T--G--C---TTT-T-----AT--TCTT-T
gi|51 : TCTC-CCC-TC-TTC-CA-GG--AGGA-G-A--C------AT----T--G--T---TTT-T-----GT--ACTT-TCT
gi|30 : CTC-CCT-TC-TTC-CA-GG--GAGA-G-A--C--AT--TC----A---------TTT-T-----GT--ACTT-TCTGT-C-----AG-TCTG
gi|25 : cCCC-CCT-TC-TTC-CA-GG--GG-A-G-A--C--AT--AT----G--T--T---TTT-T-----GTA-ACTT-TCTG
gi|10 : attcCTT-CTC-TC-TTC-CA-TG--GAGA-T-ATAC--AC--AT----A--G--T---TTT-T-----GT--ACTT-GCTGT-C-----gcgtc
gi|48 : -CCC-TC-TTC-CA-GG--GAGA-G-A--C--AT--TT----------T---TTT-T-----GT--ACTT-TCTGT-C-----CG-cctccaccc
gi|32 : -CCC-GC-ATC-AA-TG--GGCA-G----C--TT--AT----A--G--T---TTT-C---------ACTTGTCTGT-C-----TG-TCT
gi|23 : gagctCC-TC-TTC-CA-GG--GGGA-A-A--C--AT--CT----T--G--T---TTT-T-----AT--ACTT-TCTGA-C-----CG-TCT
gi|3 : gatttt-TC-TTT-CA-GA--GGGAAG-A--C--AT--TT----T--G--T---TTT-T-----GT--CCTT-TCTGT-C-----TG-TCCG
gi|7 : catggtgaatttttatt-TC-TCC-CA-AGAGGGGA-G-A--C--AT--AT----T--G--T---TTTTC-----GT--ACTT-CCTGG-C-----CA-TCTt
gi|47 : ttaattagC-TTC-CA-GG--GGGA-G-A--C------AT----T--G--T---TTT-T-----GT--ACTT-TCTGT-C-----CG-TCtgt
gi|40 : gtcC-TTT-CA-GG--AAAA-G-A--C--AT--AT----T--G--T---TTT-------GT--ACTT-TCTGT-C-----
gi|26 : -TTC-CA-GG--GGGA-G-A--C--AT--ATTTTTACTG--T---TTA-T-----GT--ACTT-TCTGT-C-----TG-TTTGaatccgtcgg
23 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|2 ): TCTATGCTCCCTTTCCCGTTTGAAAAATGGAGAGGCATAAGCTTTTGCACCTGTCGTCGGTTGGTC
Unaligned ( gi|6 ): TTTTATCCCCCCTTTTTGTGAAAAGAGGGGGCATAGTTCGTTTCACCGTTATTCGTGTCG
Unaligned ( gi|11 ): AACATATTTCTACCTCCTTTCACAGAAGAAGGGACATATTGCTTTGCACTTGTTGG
Unaligned ( gi|12 ): ATTTTTATGTCCCCTTTGAAAAAGAGGGTGTAGATCGTATTGCATTTGTCTGTAGG
Unaligned ( gi|14 ): TTTATTCCTCCTTTTAAAAGAGGGGGCATATGGTTTTGCACCTGTCAGTCGGTCA
Unaligned ( gi|16 ): TTTTATGCCCTCCTTTGAAAATGAGGGGGCATATTGATTTGCAACTGTCGGTCG
Unaligned ( gi|17 ): TTTATGCCCCCCTTTGAAAAATAGGCGGCATTATGTTTTGCACCTGTCGGTCGG
Unaligned ( gi|20 ): ATATTTATGCCCCCCCCCTTTTTTTTTAAAGGGTAGGGGCATATTGTATTGCA
Unaligned ( gi|29 ): CCCCCTTTGAAAAAGAGGCATATTGTTTTGGCCACGCGGTCGGTCGGTCTG
Unaligned ( gi|33 ): TTTTTAAGTGCCCCCCTTTGAAAAAAGAGGGGGAATTGTTTGCACCTGTC
Unaligned ( gi|35 ): TTTTTATGCCCCCCTTTGAAAAAGAGGGGGCATATTGTTGTGCACCTGT
Unaligned ( gi|39 ): ATTTTTTAATCCCCCCTTTGAAAAGAGGGGGACCACAATTGTTTTGCA
Unaligned ( gi|41 ): TATGTCTATATTTATGCCTTTTTAAGGTGGAGATGTATTGTGTTTG
Unaligned ( gi|42 ): GTTTTTATATCCCCCTTTGAAAAAGGGGGCACTATATTGTTTTGCA
Unaligned ( gi|44 ): TTTTTGCCCCCCCCCTTTGAAAAGAAGGGGGCCATATTGTTTTG
Unaligned ( gi|45 ): TTTTTATGCCTCCCTAAGAAAAAGAAGGGGCATATTGTTTTGCA
Unaligned ( gi|46 ): TTTATTGCCCCCATTTCGAAAAGAGGGGCATATTGTTTGCACCT
Unaligned ( gi|49 ): TATTTTTATGCCCCTCTTTTTCAAAGAGGGGGCATATTGTTTT
Unaligned ( gi|50 ): ATTAATGCCCCCTTTGAAAAAGAGGGGACACATTGTTTTGCAA
Unaligned ( gi|59 ): CCCCCATTGAAAAAGAGGGGACATATTGTTTTGCA
Unaligned ( gi|60 ): CCCCCCCCTTGAAAAGAGGGGCCATGTTGTTTTGC
Unaligned ( gi|61 ): CCCCCCCCTTGAAAAGAGGGGCCATGTTGTTTTGC
Unaligned ( gi|62 ): GTATTTTTATGCCCCCCTTTGAAAAAGAG
Alignments
lowQualScore : 1 1 1 1 1 11 1 22 1 1 333333 1 444444 1 44444 22 44444 1
lowQualScore : . . . . . .. . .. . . ...... . ...... . ..... .. ..... .
lowQualScore : 2 1 0 0 0 44 0 88 0 0 888888 0 111111 1 00000 77 88888 9
consensus : TGTCTC-CCC-TC-TTC-CA-GG--GGGA-GA--C-A-T--A---T-T------G-TTTTT-----GT--ACTTTCTGTCC-----G-TCTG
Reference ( family-351 ) : TGTCTC-CCC-TC-TTC-CA-GG--GGGA-GA--C-A-T--A---T-T------G-TTTTT-----GT--ACTTTCTGTCC-----G-TCTG
gi|1 : TGTCTC-GCC-TC-TAC-CACGG--GGGA-GGAGT-A-T--AGGAT-T------G-ATTTT-----GT--A-TTTCTGTCT-----A-TC
gi|10 : aCTT-CTC-TC-TTC-CA-TG--GAGA-TATAC-A-C--A---T-A------G-TTTTT-----GT--ACTTGCTGTCC-----C-TCgtgtctatttggccggt
gi|13 : TGTCTC-TCC-TC-TTCGCA-GG--GGGT-GA--C-A-T--A---T-T------GTTTTTT-----GTCAGCTTTCTGcaccc
gi|15 : taTGTCTC-CCC-TC-TTC-CA-GG--GGGA-GA--C-G-T--A---T-A------G-TTTTC-----GT--ACTTTCTGTCT-----G-TCTGgcg
gi|18 : TGTCAC-TCC-CC-TTC-AA-GG--GAGA-AG--C-A-T--------T------G-TTTTT-----GT--ACTTTCTGTCC-----ATTCTG
gi|19 : TGTCAC-ACC-TC-TCT-CA-AG--GGGA-----C-A-T--A---T-T------G-TTTT------GT--ACTTTATGTCA-----G-TCTG
gi|21 : taGTCTC-ACC-TT-TCC-CA-GG--AGGA-GA--C-A-T--A---T-T------G-TTTTT-----GT--ACTTTCTGTCT-----G-TCT
gi|22 : TGTCTC-CC--TC-TTC-CA-GG--GAGA--A--C-A-T--A---TCT------G-TTTTT-----GT--ACTTTCTGT-C-----G-TCTG
gi|23 : CC-TC-TTC-CA-GG--GGGA-AA--C-A-T--C---T-T------G-TTTTT-----AT--ACTTTCTGACC-----G-TCT
gi|24 : gattttTGTCTC-CCC-TC-TTC-CA-GG--A--A-GA--C-A-T--A---T-T------G-TTTTC-----AT--ACTTTCTGACC-----G-TCT
gi|25 : aCCC-CCT-TC-TTC-CA-GG--GG-A-GA--C-A-T--A---T-G------T-TTTTT-----GTA-ACTTTCTG
gi|26 : attc-TTC-CA-GG--GGGA-GA--C-A-T--A---T-TTTTACTG-TTTAT-----GT--ACTTTCTGTCT-----G-TTTGgcgtc
gi|27 : TGTCTC-CC--TC-TTC-CA-GG--GAGA--A--C-A-T--A---T-T------G-TTTTT-----GT--ACTTTCTGT-C-----G-TCTGgc
gi|28 : TGTCTC-TCC-TC-TTC-CA-TG--GGGA-GA--CTATT--A---T-T------G-TTTTT-----AT--ACTTTTTGTC
gi|3 : g-TC-TTT-CA-GA--GGGAAGA--C-A-T--T---T-T------G-TTTTT-----GT--CCTTTCTGTCT-----G-TCCG
gi|30 : catggtgaatttttattCTC-CCT-TC-TTC-CA-GG--GAGA-GA--C-A-T--------T------C-ATTTT-----GT--ACTTTCTGTCA-----G-TCTGt
gi|31 : cTGTCTC-CCC-TC-TTC-CA-GG--GGGA-AA--C-A-TAAA---T-T------G--TTTT-----GT--ACTTTTTGTC
gi|34 : aTGTCTC-CCC-TC--TC-CA-GG--G----AA--C-A-T--A---T-T------G--TTTT-----G---ACTTTCTGT-C-----G-TCTG
gi|36 : tcTGCCTC-CCC-TC-TTC-CA-GG--GGGA-GA----A-C--A---T-TG-----G-TTTTC-----GT--ACTTTCT
gi|37 : TGTTTC-CCC-TC-TTC-AT-GG--GGGA-GA--C-A-T--------T------G-TTTTT-----GT--ACTTTCTGtga
gi|38 : TATCTC-CCC-TC-TTT-CA-GG--GGAA-AA--C-A-T--A---T-T------G-TTTTG-----GT--ACTTgtcg
gi|4 : ttaTGTCTC-CCCCTCATTC-CA-GG--GG-A-GA--C-A-T--A---T-T------G-TTTTTTATTGGT--ACTTTCTGcga
gi|40 : tttaC-TTT-CA-GG--AAAA-GA--C-A-T--A---T-T------G--TTTT-----GT--ACTTTCTGTCA-----A-TCCGcgctgt
gi|43 : GTCTC-CCC-TT-TTC-CA-AG--GGGA-GA--C-A-T------T-T--------TTTTT-----GT--ACTTTCTGTCtcgg
gi|47 : C-TTC-CA-GG--GGGA-GA--C-A-T--------T------G-TTTTT-----GT--ACTTTCTGTCC-----G-TC
gi|48 : gtc-CCC-TC-TTC-CA-GG--GAGA-GA--C-A-T------T-T--------TTTTT-----GT--ACTTTCTGTCC-----G-
gi|49 : TGCCCC-TCT-TT-TTC-AA-AG--AGGG-GG--C-A-T--A---T-T------G-TTTT
gi|5 : tatttttaTGTCTC-TC--TC-TTC-CA-AG--GGGA-GA--C-A-T--A---T-T------G-TTTTC-----AT--ACTTTCGGCCCTCAGTG-TCTG
gi|51 : taTCTC-CCC-TC-TTC-CA-GG--AGGA-GA--C------A---T-T------G-TTTTT-----GT--ACTTTCT
gi|52 : GTCTC-CCC-TC-TTC-CA-GG--GGGA-GA--C------A---T-T------G-TTTTT-----GT--TCTTT
gi|53 : GTCTT-CCC-TC-CTC-CA-GG--GGGA-GA--C------A---T-T------G-CTTTT-----AT--TCTTT
gi|54 : GTCTT-CCC-TC-CTC-CA-GG--GGGA-GA--C------A---T-T------G-CTTTT-----AT--TCTTT
gi|55 : TGTCAC-CCC-TC-TTC-CA-GG--GGGA-GA--C------A---T-T------G-CTTTT-----GT--ACT
gi|56 : TGTCTC-CCC-TC-TTC-CA-GG--GGGA-A----------G---T-T------G-TTTT
gi|57 : atattaTGTTTC-CCC-TC-TTC-CA-GG--GAGA-GA--C-A-T--A---T-
gi|58 : taTGTCTC-CCC-TC-TTC-CA-GG--GGGA-GA--C-A-T--G---T-T------attgt
gi|7 : atta-TC-TCC-CA-AGAGGGGA-GA--C-A-T--A---T-T------G-TTTTTC----GT--ACTTCCTGGCC-----A-TCTt
gi|8 : ttaattagTGTCTTTCCC-TC-TTC-CA-GG--GGGA-GA--C-A-T--A---T-T------G-TTTTC-----GT--GCATTCTGTCC-----A-tgt
gi|9 : attaTGTTTC-TCC-T--TTC-CA-GG--GG-A-GA--C-A-T--A---T-T------G-CTTTC-----GT--ACTTTCTGGCC-----G-TCTG
23 sequences could not be aligned to this reference sequence:
Unaligned ( gi|2 ): TCTATGCTCCCTTTCCCGTTTGAAAAATGGAGAGGCATAAGCTTTTGCACCTGTCGTCGGTTGGTC
Unaligned ( gi|6 ): TTTTATCCCCCCTTTTTGTGAAAAGAGGGGGCATAGTTCGTTTCACCGTTATTCGTGTCG
Unaligned ( gi|11 ): AACATATTTCTACCTCCTTTCACAGAAGAAGGGACATATTGCTTTGCACTTGTTGG
Unaligned ( gi|12 ): ATTTTTATGTCCCCTTTGAAAAAGAGGGTGTAGATCGTATTGCATTTGTCTGTAGG
Unaligned ( gi|14 ): TTTATTCCTCCTTTTAAAAGAGGGGGCATATGGTTTTGCACCTGTCAGTCGGTCA
Unaligned ( gi|16 ): TTTTATGCCCTCCTTTGAAAATGAGGGGGCATATTGATTTGCAACTGTCGGTCG
Unaligned ( gi|17 ): TTTATGCCCCCCTTTGAAAAATAGGCGGCATTATGTTTTGCACCTGTCGGTCGG
Unaligned ( gi|20 ): ATATTTATGCCCCCCCCCTTTTTTTTTAAAGGGTAGGGGCATATTGTATTGCA
Unaligned ( gi|29 ): CCCCCTTTGAAAAAGAGGCATATTGTTTTGGCCACGCGGTCGGTCGGTCTG
Unaligned ( gi|32 ): GAGCTCCCGCATCAATGGGCAGCTTATAGTTTTCACTTGTCTGTCTGTCT
Unaligned ( gi|33 ): TTTTTAAGTGCCCCCCTTTGAAAAAAGAGGGGGAATTGTTTGCACCTGTC
Unaligned ( gi|35 ): TTTTTATGCCCCCCTTTGAAAAAGAGGGGGCATATTGTTGTGCACCTGT
Unaligned ( gi|39 ): ATTTTTTAATCCCCCCTTTGAAAAGAGGGGGACCACAATTGTTTTGCA
Unaligned ( gi|41 ): TATGTCTATATTTATGCCTTTTTAAGGTGGAGATGTATTGTGTTTG
Unaligned ( gi|42 ): GTTTTTATATCCCCCTTTGAAAAAGGGGGCACTATATTGTTTTGCA
Unaligned ( gi|44 ): TTTTTGCCCCCCCCCTTTGAAAAGAAGGGGGCCATATTGTTTTG
Unaligned ( gi|45 ): TTTTTATGCCTCCCTAAGAAAAAGAAGGGGCATATTGTTTTGCA
Unaligned ( gi|46 ): TTTATTGCCCCCATTTCGAAAAGAGGGGCATATTGTTTGCACCT
Unaligned ( gi|50 ): ATTAATGCCCCCTTTGAAAAAGAGGGGACACATTGTTTTGCAA
Unaligned ( gi|59 ): CCCCCATTGAAAAAGAGGGGACATATTGTTTTGCA
Unaligned ( gi|60 ): CCCCCCCCTTGAAAAGAGGGGCCATGTTGTTTTGC
Unaligned ( gi|61 ): CCCCCCCCTTGAAAAGAGGGGCCATGTTGTTTTGC
Unaligned ( gi|62 ): GTATTTTTATGCCCCCCTTTGAAAAAGAG
Alignments
lowQualScore : 1 1 1 1 1 11 1 22 1 1 333333 1 444444 1 44444 22 44444 1
lowQualScore : . . . . . .. . .. . . ...... . ...... . ..... .. ..... .
lowQualScore : 2 1 0 0 0 44 0 88 0 0 888888 0 111111 1 00000 77 88888 9
consensus : TGTCTC-CCC-TC-TTC-CA-GG--GGGA-GA--C-A-T--A---T-T------G-TTTTT-----GT--ACTTTCTGTCC-----G-TCTG
Reference ( family-351 ) : TGTCTC-CCC-TC-TTC-CA-GG--GGGA-GA--C-A-T--A---T-T------G-TTTTT-----GT--ACTTTCTGTCC-----G-TCTG
gi|1 : TGTCTC-GCC-TC-TAC-CACGG--GGGA-GGAGT-A-T--AGGAT-T------G-ATTTT-----GT--A-TTTCTGTCT-----A-TC
gi|10 : aCTT-CTC-TC-TTC-CA-TG--GAGA-TATAC-A-C--A---T-A------G-TTTTT-----GT--ACTTGCTGTCC-----C-TCgtgtctatttggccggt
gi|13 : TGTCTC-TCC-TC-TTCGCA-GG--GGGT-GA--C-A-T--A---T-T------GTTTTTT-----GTCAGCTTTCTGcaccc
gi|15 : taTGTCTC-CCC-TC-TTC-CA-GG--GGGA-GA--C-G-T--A---T-A------G-TTTTC-----GT--ACTTTCTGTCT-----G-TCTGgcg
gi|18 : TGTCAC-TCC-CC-TTC-AA-GG--GAGA-AG--C-A-T--------T------G-TTTTT-----GT--ACTTTCTGTCC-----ATTCTG
gi|19 : TGTCAC-ACC-TC-TCT-CA-AG--GGGA-----C-A-T--A---T-T------G-TTTT------GT--ACTTTATGTCA-----G-TCTG
gi|21 : taGTCTC-ACC-TT-TCC-CA-GG--AGGA-GA--C-A-T--A---T-T------G-TTTTT-----GT--ACTTTCTGTCT-----G-TCT
gi|22 : TGTCTC-CC--TC-TTC-CA-GG--GAGA--A--C-A-T--A---TCT------G-TTTTT-----GT--ACTTTCTGT-C-----G-TCTG
gi|23 : CC-TC-TTC-CA-GG--GGGA-AA--C-A-T--C---T-T------G-TTTTT-----AT--ACTTTCTGACC-----G-TCT
gi|24 : gattttTGTCTC-CCC-TC-TTC-CA-GG--A--A-GA--C-A-T--A---T-T------G-TTTTC-----AT--ACTTTCTGACC-----G-TCT
gi|25 : aCCC-CCT-TC-TTC-CA-GG--GG-A-GA--C-A-T--A---T-G------T-TTTTT-----GTA-ACTTTCTG
gi|26 : attc-TTC-CA-GG--GGGA-GA--C-A-T--A---T-TTTTACTG-TTTAT-----GT--ACTTTCTGTCT-----G-TTTGgcgtc
gi|27 : TGTCTC-CC--TC-TTC-CA-GG--GAGA--A--C-A-T--A---T-T------G-TTTTT-----GT--ACTTTCTGT-C-----G-TCTGgc
gi|28 : TGTCTC-TCC-TC-TTC-CA-TG--GGGA-GA--CTATT--A---T-T------G-TTTTT-----AT--ACTTTTTGTC
gi|3 : g-TC-TTT-CA-GA--GGGAAGA--C-A-T--T---T-T------G-TTTTT-----GT--CCTTTCTGTCT-----G-TCCG
gi|30 : catggtgaatttttattCTC-CCT-TC-TTC-CA-GG--GAGA-GA--C-A-T--------T------C-ATTTT-----GT--ACTTTCTGTCA-----G-TCTGt
gi|31 : cTGTCTC-CCC-TC-TTC-CA-GG--GGGA-AA--C-A-TAAA---T-T------G--TTTT-----GT--ACTTTTTGTC
gi|34 : aTGTCTC-CCC-TC--TC-CA-GG--G----AA--C-A-T--A---T-T------G--TTTT-----G---ACTTTCTGT-C-----G-TCTG
gi|36 : tcTGCCTC-CCC-TC-TTC-CA-GG--GGGA-GA----A-C--A---T-TG-----G-TTTTC-----GT--ACTTTCT
gi|37 : TGTTTC-CCC-TC-TTC-AT-GG--GGGA-GA--C-A-T--------T------G-TTTTT-----GT--ACTTTCTGtga
gi|38 : TATCTC-CCC-TC-TTT-CA-GG--GGAA-AA--C-A-T--A---T-T------G-TTTTG-----GT--ACTTgtcg
gi|4 : ttaTGTCTC-CCCCTCATTC-CA-GG--GG-A-GA--C-A-T--A---T-T------G-TTTTTTATTGGT--ACTTTCTGcga
gi|40 : tttaC-TTT-CA-GG--AAAA-GA--C-A-T--A---T-T------G--TTTT-----GT--ACTTTCTGTCA-----A-TCCGcgctgt
gi|43 : GTCTC-CCC-TT-TTC-CA-AG--GGGA-GA--C-A-T------T-T--------TTTTT-----GT--ACTTTCTGTCtcgg
gi|47 : C-TTC-CA-GG--GGGA-GA--C-A-T--------T------G-TTTTT-----GT--ACTTTCTGTCC-----G-TC
gi|48 : gtc-CCC-TC-TTC-CA-GG--GAGA-GA--C-A-T------T-T--------TTTTT-----GT--ACTTTCTGTCC-----G-
gi|49 : TGCCCC-TCT-TT-TTC-AA-AG--AGGG-GG--C-A-T--A---T-T------G-TTTT
gi|5 : tatttttaTGTCTC-TC--TC-TTC-CA-AG--GGGA-GA--C-A-T--A---T-T------G-TTTTC-----AT--ACTTTCGGCCCTCAGTG-TCTG
gi|51 : taTCTC-CCC-TC-TTC-CA-GG--AGGA-GA--C------A---T-T------G-TTTTT-----GT--ACTTTCT
gi|52 : GTCTC-CCC-TC-TTC-CA-GG--GGGA-GA--C------A---T-T------G-TTTTT-----GT--TCTTT
gi|53 : GTCTT-CCC-TC-CTC-CA-GG--GGGA-GA--C------A---T-T------G-CTTTT-----AT--TCTTT
gi|54 : GTCTT-CCC-TC-CTC-CA-GG--GGGA-GA--C------A---T-T------G-CTTTT-----AT--TCTTT
gi|55 : TGTCAC-CCC-TC-TTC-CA-GG--GGGA-GA--C------A---T-T------G-CTTTT-----GT--ACT
gi|56 : TGTCTC-CCC-TC-TTC-CA-GG--GGGA-A----------G---T-T------G-TTTT
gi|57 : atattaTGTTTC-CCC-TC-TTC-CA-GG--GAGA-GA--C-A-T--A---T-
gi|58 : taTGTCTC-CCC-TC-TTC-CA-GG--GGGA-GA--C-A-T--G---T-T------attgt
gi|7 : atta-TC-TCC-CA-AGAGGGGA-GA--C-A-T--A---T-T------G-TTTTTC----GT--ACTTCCTGGCC-----A-TCTt
gi|8 : ttaattagTGTCTTTCCC-TC-TTC-CA-GG--GGGA-GA--C-A-T--A---T-T------G-TTTTC-----GT--GCATTCTGTCC-----A-tgt
gi|9 : attaTGTTTC-TCC-T--TTC-CA-GG--GG-A-GA--C-A-T--A---T-T------G-CTTTC-----GT--ACTTTCTGGCC-----G-TCTG
blockSeqs : T C A G . AG A TA T T AAA C TTTACT T TATTG CA TCAGT T
blockSeqs : . . . . . . . . . . A . G . C A . .
blockSeqs : . . . . . . . . . . A . . . . . . .
blockSeqs : . . . . . . . . . . A . . . . . . .
blockSeqs : . . . . . . . . . . A . . . . . . .
blockSeqs : . . . . . . . . . . A . . . . . . .
blockSeqs : . . . . . . . . . . A . . . . . . .
blockSeqs : . . . . . . . . . . C . . . . . . .
blockSeqs : . . . . . . . . . . A . . . . . . .
blockSeqs : . . . . . . . . . . A . . . . . . .
blockSeqs : . . . . . . . . . . A . . . . . . .
blockSeqs : . . . . . . . . . . A . . . . . . .
blockSeqs : . . . . . . . . . . A . . . . . . .
blockSeqs : . . . . . . . . . . T . . . . . . .
blockSeqs : . . . . . . . . . . A . . . . . . .
blockSeqs : . . . . . . . . . . A . . . . . . .
blockSeqs : . . . . . . . . . . A . . . . . . .
blockSeqs : . . . . . . . . . . A . . . . . . .
blockSeqs : . . . . . . . . . . A . . . . . . .
blockSeqs : . . . . . . . . . . A . . . . . . .
blockSeqs : . . . . . . . . . . A . . . . .
blockSeqs : . . . . . . . . . . A . . . . .
blockSeqs : . . . . . . . . . . A . . . . .
blockSeqs : . . . . . . . . . . A . . . . .
blockSeqs : . . . . . . . . . . A . . . . .
blockSeqs : . . . . . . . . . . A . . . . .
blockSeqs : . . . . . . . . . . G . . . . .
blockSeqs : . . . . . . . . . . A . . . . .
blockSeqs : . . . . . . . . . . G . . . . .
blockSeqs : . . . . . . . . . . A . . . . .
blockSeqs : . . . . . . . . . . A . . . . .
blockSeqs : . . . . . . . . . . A . . . . .
blockSeqs : . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . .
blockSeqs : . . . . . . . . . .
blockSeqCons : ** A*****
originalCons : TGTCTC-CCC-TC-TTC-CA-GG--GGGA-GA--C-A-T--A---T-T------G-TTTTT-----GT--ACTTTCTGTCC-----G-TCTG
finalCons : TGTCTC-CCC-TC-TTC-CA-GG--GGGA-GA--C-A-TA-----T-T------G-TTTTT-----GT--ACTTTCTGTCC-----G-TCTG
23 sequences could not be aligned to this reference sequence:
Unaligned ( gi|2 ): TCTATGCTCCCTTTCCCGTTTGAAAAATGGAGAGGCATAAGCTTTTGCACCTGTCGTCGGTTGGTC
Unaligned ( gi|6 ): TTTTATCCCCCCTTTTTGTGAAAAGAGGGGGCATAGTTCGTTTCACCGTTATTCGTGTCG
Unaligned ( gi|11 ): AACATATTTCTACCTCCTTTCACAGAAGAAGGGACATATTGCTTTGCACTTGTTGG
Unaligned ( gi|12 ): ATTTTTATGTCCCCTTTGAAAAAGAGGGTGTAGATCGTATTGCATTTGTCTGTAGG
Unaligned ( gi|14 ): TTTATTCCTCCTTTTAAAAGAGGGGGCATATGGTTTTGCACCTGTCAGTCGGTCA
Unaligned ( gi|16 ): TTTTATGCCCTCCTTTGAAAATGAGGGGGCATATTGATTTGCAACTGTCGGTCG
Unaligned ( gi|17 ): TTTATGCCCCCCTTTGAAAAATAGGCGGCATTATGTTTTGCACCTGTCGGTCGG
Unaligned ( gi|20 ): ATATTTATGCCCCCCCCCTTTTTTTTTAAAGGGTAGGGGCATATTGTATTGCA
Unaligned ( gi|29 ): CCCCCTTTGAAAAAGAGGCATATTGTTTTGGCCACGCGGTCGGTCGGTCTG
Unaligned ( gi|32 ): GAGCTCCCGCATCAATGGGCAGCTTATAGTTTTCACTTGTCTGTCTGTCT
Unaligned ( gi|33 ): TTTTTAAGTGCCCCCCTTTGAAAAAAGAGGGGGAATTGTTTGCACCTGTC
Unaligned ( gi|35 ): TTTTTATGCCCCCCTTTGAAAAAGAGGGGGCATATTGTTGTGCACCTGT
Unaligned ( gi|39 ): ATTTTTTAATCCCCCCTTTGAAAAGAGGGGGACCACAATTGTTTTGCA
Unaligned ( gi|41 ): TATGTCTATATTTATGCCTTTTTAAGGTGGAGATGTATTGTGTTTG
Unaligned ( gi|42 ): GTTTTTATATCCCCCTTTGAAAAAGGGGGCACTATATTGTTTTGCA
Unaligned ( gi|44 ): TTTTTGCCCCCCCCCTTTGAAAAGAAGGGGGCCATATTGTTTTG
Unaligned ( gi|45 ): TTTTTATGCCTCCCTAAGAAAAAGAAGGGGCATATTGTTTTGCA
Unaligned ( gi|46 ): TTTATTGCCCCCATTTCGAAAAGAGGGGCATATTGTTTGCACCT
Unaligned ( gi|50 ): ATTAATGCCCCCTTTGAAAAAGAGGGGACACATTGTTTTGCAA
Unaligned ( gi|59 ): CCCCCATTGAAAAAGAGGGGACATATTGTTTTGCA
Unaligned ( gi|60 ): CCCCCCCCTTGAAAAGAGGGGCCATGTTGTTTTGC
Unaligned ( gi|61 ): CCCCCCCCTTGAAAAGAGGGGCCATGTTGTTTTGC
Unaligned ( gi|62 ): GTATTTTTATGCCCCCCTTTGAAAAAGAG
Alignments
lowQualScore : 1 1 1 1 1 11 1 22 1 1 333333 1 444444 1 44444 22 44444 1
lowQualScore : . . . . . .. . .. . . ...... . ...... . ..... .. ..... .
lowQualScore : 2 1 0 0 0 44 0 88 0 0 888888 0 111111 1 00000 77 88888 9
consensus : TGTCTC-CCC-TC-TTC-CA-GG--GGGA-GA--C-A-T--A---T-T------G-TTTTT-----GT--ACTTTCTGTCC-----G-TCTG
Reference ( family-351 ) : TGTCTC-CCC-TC-TTC-CA-GG--GGGA-GA--C-A-T--A---T-T------G-TTTTT-----GT--ACTTTCTGTCC-----G-TCTG
gi|1 : TGTCTC-GCC-TC-TAC-CACGG--GGGA-GGAGT-A-T--AGGAT-T------G-ATTTT-----GT--A-TTTCTGTCT-----A-TC
gi|10 : aCTT-CTC-TC-TTC-CA-TG--GAGA-TATAC-A-C--A---T-A------G-TTTTT-----GT--ACTTGCTGTCC-----C-TCgtgtctatttggccggt
gi|13 : TGTCTC-TCC-TC-TTCGCA-GG--GGGT-GA--C-A-T--A---T-T------GTTTTTT-----GTCAGCTTTCTGcaccc
gi|15 : taTGTCTC-CCC-TC-TTC-CA-GG--GGGA-GA--C-G-T--A---T-A------G-TTTTC-----GT--ACTTTCTGTCT-----G-TCTGgcg
gi|18 : TGTCAC-TCC-CC-TTC-AA-GG--GAGA-AG--C-A-T--------T------G-TTTTT-----GT--ACTTTCTGTCC-----ATTCTG
gi|19 : TGTCAC-ACC-TC-TCT-CA-AG--GGGA-----C-A-T--A---T-T------G-TTTT------GT--ACTTTATGTCA-----G-TCTG
gi|21 : taGTCTC-ACC-TT-TCC-CA-GG--AGGA-GA--C-A-T--A---T-T------G-TTTTT-----GT--ACTTTCTGTCT-----G-TCT
gi|22 : TGTCTC-CC--TC-TTC-CA-GG--GAGA--A--C-A-T--A---TCT------G-TTTTT-----GT--ACTTTCTGT-C-----G-TCTG
gi|23 : CC-TC-TTC-CA-GG--GGGA-AA--C-A-T--C---T-T------G-TTTTT-----AT--ACTTTCTGACC-----G-TCT
gi|24 : gattttTGTCTC-CCC-TC-TTC-CA-GG--A--A-GA--C-A-T--A---T-T------G-TTTTC-----AT--ACTTTCTGACC-----G-TCT
gi|25 : aCCC-CCT-TC-TTC-CA-GG--GG-A-GA--C-A-T--A---T-G------T-TTTTT-----GTA-ACTTTCTG
gi|26 : attc-TTC-CA-GG--GGGA-GA--C-A-T--A---T-TTTTACTG-TTTAT-----GT--ACTTTCTGTCT-----G-TTTGgcgtc
gi|27 : TGTCTC-CC--TC-TTC-CA-GG--GAGA--A--C-A-T--A---T-T------G-TTTTT-----GT--ACTTTCTGT-C-----G-TCTGgc
gi|28 : TGTCTC-TCC-TC-TTC-CA-TG--GGGA-GA--CTATT--A---T-T------G-TTTTT-----AT--ACTTTTTGTC
gi|3 : g-TC-TTT-CA-GA--GGGAAGA--C-A-T--T---T-T------G-TTTTT-----GT--CCTTTCTGTCT-----G-TCCG
gi|30 : catggtgaatttttattCTC-CCT-TC-TTC-CA-GG--GAGA-GA--C-A-T--------T------C-ATTTT-----GT--ACTTTCTGTCA-----G-TCTGt
gi|31 : cTGTCTC-CCC-TC-TTC-CA-GG--GGGA-AA--C-A-TAAA---T-T------G--TTTT-----GT--ACTTTTTGTC
gi|34 : aTGTCTC-CCC-TC--TC-CA-GG--G----AA--C-A-T--A---T-T------G--TTTT-----G---ACTTTCTGT-C-----G-TCTG
gi|36 : tcTGCCTC-CCC-TC-TTC-CA-GG--GGGA-GA----A-C--A---T-TG-----G-TTTTC-----GT--ACTTTCT
gi|37 : TGTTTC-CCC-TC-TTC-AT-GG--GGGA-GA--C-A-T--------T------G-TTTTT-----GT--ACTTTCTGtga
gi|38 : TATCTC-CCC-TC-TTT-CA-GG--GGAA-AA--C-A-T--A---T-T------G-TTTTG-----GT--ACTTgtcg
gi|4 : ttaTGTCTC-CCCCTCATTC-CA-GG--GG-A-GA--C-A-T--A---T-T------G-TTTTTTATTGGT--ACTTTCTGcga
gi|40 : tttaC-TTT-CA-GG--AAAA-GA--C-A-T--A---T-T------G--TTTT-----GT--ACTTTCTGTCA-----A-TCCGcgctgt
gi|43 : GTCTC-CCC-TT-TTC-CA-AG--GGGA-GA--C-A-T------T-T--------TTTTT-----GT--ACTTTCTGTCtcgg
gi|47 : C-TTC-CA-GG--GGGA-GA--C-A-T--------T------G-TTTTT-----GT--ACTTTCTGTCC-----G-TC
gi|48 : gtc-CCC-TC-TTC-CA-GG--GAGA-GA--C-A-T------T-T--------TTTTT-----GT--ACTTTCTGTCC-----G-
gi|49 : TGCCCC-TCT-TT-TTC-AA-AG--AGGG-GG--C-A-T--A---T-T------G-TTTT
gi|5 : tatttttaTGTCTC-TC--TC-TTC-CA-AG--GGGA-GA--C-A-T--A---T-T------G-TTTTC-----AT--ACTTTCGGCCCTCAGTG-TCTG
gi|51 : taTCTC-CCC-TC-TTC-CA-GG--AGGA-GA--C------A---T-T------G-TTTTT-----GT--ACTTTCT
gi|52 : GTCTC-CCC-TC-TTC-CA-GG--GGGA-GA--C------A---T-T------G-TTTTT-----GT--TCTTT
gi|53 : GTCTT-CCC-TC-CTC-CA-GG--GGGA-GA--C------A---T-T------G-CTTTT-----AT--TCTTT
gi|54 : GTCTT-CCC-TC-CTC-CA-GG--GGGA-GA--C------A---T-T------G-CTTTT-----AT--TCTTT
gi|55 : TGTCAC-CCC-TC-TTC-CA-GG--GGGA-GA--C------A---T-T------G-CTTTT-----GT--ACT
gi|56 : TGTCTC-CCC-TC-TTC-CA-GG--GGGA-A----------G---T-T------G-TTTT
gi|57 : atattaTGTTTC-CCC-TC-TTC-CA-GG--GAGA-GA--C-A-T--A---T-
gi|58 : taTGTCTC-CCC-TC-TTC-CA-GG--GGGA-GA--C-A-T--G---T-T------attgt
gi|7 : atta-TC-TCC-CA-AGAGGGGA-GA--C-A-T--A---T-T------G-TTTTTC----GT--ACTTCCTGGCC-----A-TCTt
gi|8 : ttaattagTGTCTTTCCC-TC-TTC-CA-GG--GGGA-GA--C-A-T--A---T-T------G-TTTTC-----GT--GCATTCTGTCC-----A-tgt
gi|9 : attaTGTTTC-TCC-T--TTC-CA-GG--GG-A-GA--C-A-T--A---T-T------G-CTTTC-----GT--ACTTTCTGGCC-----G-TCTG
23 sequences could not be aligned to this reference sequence:
Unaligned ( gi|2 ): TCTATGCTCCCTTTCCCGTTTGAAAAATGGAGAGGCATAAGCTTTTGCACCTGTCGTCGGTTGGTC
Unaligned ( gi|6 ): TTTTATCCCCCCTTTTTGTGAAAAGAGGGGGCATAGTTCGTTTCACCGTTATTCGTGTCG
Unaligned ( gi|11 ): AACATATTTCTACCTCCTTTCACAGAAGAAGGGACATATTGCTTTGCACTTGTTGG
Unaligned ( gi|12 ): ATTTTTATGTCCCCTTTGAAAAAGAGGGTGTAGATCGTATTGCATTTGTCTGTAGG
Unaligned ( gi|14 ): TTTATTCCTCCTTTTAAAAGAGGGGGCATATGGTTTTGCACCTGTCAGTCGGTCA
Unaligned ( gi|16 ): TTTTATGCCCTCCTTTGAAAATGAGGGGGCATATTGATTTGCAACTGTCGGTCG
Unaligned ( gi|17 ): TTTATGCCCCCCTTTGAAAAATAGGCGGCATTATGTTTTGCACCTGTCGGTCGG
Unaligned ( gi|20 ): ATATTTATGCCCCCCCCCTTTTTTTTTAAAGGGTAGGGGCATATTGTATTGCA
Unaligned ( gi|29 ): CCCCCTTTGAAAAAGAGGCATATTGTTTTGGCCACGCGGTCGGTCGGTCTG
Unaligned ( gi|32 ): GAGCTCCCGCATCAATGGGCAGCTTATAGTTTTCACTTGTCTGTCTGTCT
Unaligned ( gi|33 ): TTTTTAAGTGCCCCCCTTTGAAAAAAGAGGGGGAATTGTTTGCACCTGTC
Unaligned ( gi|35 ): TTTTTATGCCCCCCTTTGAAAAAGAGGGGGCATATTGTTGTGCACCTGT
Unaligned ( gi|39 ): ATTTTTTAATCCCCCCTTTGAAAAGAGGGGGACCACAATTGTTTTGCA
Unaligned ( gi|41 ): TATGTCTATATTTATGCCTTTTTAAGGTGGAGATGTATTGTGTTTG
Unaligned ( gi|42 ): GTTTTTATATCCCCCTTTGAAAAAGGGGGCACTATATTGTTTTGCA
Unaligned ( gi|44 ): TTTTTGCCCCCCCCCTTTGAAAAGAAGGGGGCCATATTGTTTTG
Unaligned ( gi|45 ): TTTTTATGCCTCCCTAAGAAAAAGAAGGGGCATATTGTTTTGCA
Unaligned ( gi|46 ): TTTATTGCCCCCATTTCGAAAAGAGGGGCATATTGTTTGCACCT
Unaligned ( gi|50 ): ATTAATGCCCCCTTTGAAAAAGAGGGGACACATTGTTTTGCAA
Unaligned ( gi|59 ): CCCCCATTGAAAAAGAGGGGACATATTGTTTTGCA
Unaligned ( gi|60 ): CCCCCCCCTTGAAAAGAGGGGCCATGTTGTTTTGC
Unaligned ( gi|61 ): CCCCCCCCTTGAAAAGAGGGGCCATGTTGTTTTGC
Unaligned ( gi|62 ): GTATTTTTATGCCCCCCTTTGAAAAAGAG