lowQualScore : 111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 000000000000000000000000000000000000000000000000000000000000000000000000000 2222
lowQualScore : 1 1 1 1 3 4 1 4 33 22 3 1 1 222 1 777777777777777777777777777777777777777777777777777777777777777777777777777 3333 55555 3 222 1 1 1 1 2222 1 1 3 5 3 1 1 444444 1 1
lowQualScore : . . . . . . . . .. .. . . . ... . ........................................................................... .... ..... . ... . . . . .... . . . . . . . ...... . .
lowQualScore : 7 7 5 5 1 6 5 6 77 11 1 5 5 999 7 888888888888888888888888888888888888888888888888888888888888888888888888888 5555 88888 3 777 5 5 5 5 8888 5 5 0 9 0 5 5 333333 5 5
consensus : GGC-G-CTT-G-TT-T-C-ATAAA-CTTT--G--C-AA-AGTA-T-G-C-T-----A--AT--ATAAT----A-----------CA----------C----------------T------------AT----AT-----AG-T---A-T-A-C-TTTG--GC-AAA-G-TTTATG-A-AA-C-A------AG-C-GCCTG
Reference ( gi|6 ) : GGC-G-CTT-G-TT-T-C-ATAAA-CTTT--G--C-AA-AGTA-T-A-C-T-----A--AT--ATAAT----A-----------CA----------C----------------T------------AT----AT-----AG-T---A-T-A-C-TTTG--GC-AAA-G-TTTATG-A-AA-C-A------AG-C-GCCTG
gi|10 : GGC-G-CTT-G-TT-T-C-ATAAA-CTTT--G--C-AA-AGTA-TAA-C-T--------AT--ATA------------------------------------------------------------AT----AT-----AG-T---A-T-A-C-TTTG--G--AAA-G-TTTATG-A-AA-C-A------AG-C-GCCTG
gi|10 : GGC-G-CTT-G-TT-T-C-ATAAA-CTTT--C--C-AA-AGTA-T-A-C-T--------AT--AT------------------------------------------------T------------AT----AT-----AGTT---A-T-A-C-TTT---GC-AAA-G-TTTATG-A-AA-C-A------AG-C-GCCTt
gi|7 : caGGC---CTT-G-TT-T-C-ATAA--CTTT--G--C-AA-AGTA-T-G-C-T--------AT--ATAAT----A-----------CA----------A----------------T-------------T----AT------G-C---A-T-A-C-TTT---GC-AAA-G-TTTATGAA-AA-C-A------AG-C-GCCTG
gi|7 : GGC-G-CTT-G-TT-TTC-ATAAA-CTTT--G--C-AA-AGTA-T-G-CAT-----A--AT------T----G-----------TA----------T----------------T------------AT----AT-----AG-C---A-T-A-C-TTT---GC-AAA-G--TTATG-A-AA-C-A------AG---GCCct
gi|1 : caGGC-G-CCT-G-TT-T-C-ATAAA-CTTT--G--C-AA-AGTA-T-G-A-T-----A--TT--AT-AT----A-----------CAACATGTGTTGT----------------T------------AT----AT-----AG-C---A-T-A-C-TTT---GC-AAA-G-TTTATG-A-AA-C-AATTTTTAG-T-GCCTGct
gi|5 : aGGCTG-CTT-G-TT-T-C-ATAAA-CTTT--G--C-GA-AGTA-T-G-C-------G--AT--GTAACA---A-----------CA----------CATGTTGT---------T------------AT----AT-----AG-C---A-T-A-C-TTT---GC-AAA-G-TTTATG-A-AA-A-A------AG-T-GCCTtg
gi|5 : caGGC-A-CTT-T-TT-T-C-ATAAA-CTTT--G--C-AA-AGTA-T-G-C-T--------AT--ATAACA---A-----------CATGTGTTG---T----------------T------------AC----AT-----CG-C---A-T-A-C-TTC---GC-AAA-G-TTTATG-A-AA-C-A------AG-CAGCCTG
gi|4 : GGC-G-CTT-G-TT-T-C-ATAA---TTT--G--C-AA-AGTA-T-AGC-T-----A--AT--ATAAT----AACATGATATGTTA----------T----------------T------------AT----AT-----AG-T---A-TTA-C-TTTG---C-AA--G-TTTATGGA-AA-C-A------AG-C-GCCt
gi|4 : caGGC-G-CTT-G-TT-T-CCATAAA-CTT---G--C-AA-AGTAAT-A-C-T-----A---T--ATAAT----AACATATCATGTTA----------T----------------T------------AT----ATT----AGCT---A-T-A-C-TTTG---C-AAA----TTATG-A-AA-C-A------AG-C-GCCTG
gi|2 : GGC-G-CTT-GTTT-T-C-ATAAA-C-TT--G--C-AA-AGTA-T-A-C-T-----A--TT--ATAATAA--A-----------CA----------T----------------TGATATGTTATTAAT----AT-----AG-T---A-A-A-C-TTTT--GC-AAAGG-TTTATG-A-AA-C-A------AGCC-GCCT
gi|2 : caGGC-GGCTT-G-TT-T-C-ATAAACCTTT--G--CAAA-AGTT-T-A-C-T-----AT-ATTAATAAC----A-----------TATCAATGT---T----------------T------------ATTATAAT-----AG-T---A-T-A-C-TTT---GC--AA-G-TTTATGAA-AA-C-A------AG-C-GCCTG
gi|8 : GGC-G-CTT-G-TT-T-C-ATAA--CTTT--G--C-AA-AGTA-T-G-C-T--------AT--AT-GT----G-----------TA----------T----------------T------------AT----AT-----AA-T---AGC-ATC-TTTG--CA-AAA-G-TTTG-A-A-AA-C-A------At
gi|11 : acaGGC-G-CTT-G-TT-T-C-ATAAA-CTTT--G--C-AA-AGT-------------------------------------------A----------C----------------T------------AT----AT-----AG-T---A-T-A-CTTTTT--GC--AA-G-TTT-TG-AGAA-C-A------AG-C-
gi|12 : aGGC-G-CTT-G-TT-T-C-ATAAA-CTTT--G--C-AA-GGTA-T-G-C-T-----A----------------------------------------------------------------------T----AT-----AA-T---A-T-A-------------------TTATG-A-AA-C-A------AG-C-GCCTGa
gi|13 : acaGGC-G-CTT-G-TT-T-C-ATAAA-CTTT--G--C-AA-AGTA-T-A-C-T--------AT--ATAAT----A-----------
gi|9 : acaGGT-G-CTT-G-TTAT-C-ATAAAACTTTCTG--C-AA-AGTA-T-A-C-T--------AC--GTA------------------------------------------------------------------GT-----AA-T---A-T-A-C-TTTT--GC-AAA-A--TTATG-A-AA-CAA------AG-C-GCaccaagcgcctg
gi|17 : GGC-G-CTT-G-TT-T-C-ATAAA-CTTT--G--C-AA-AGTA-T-ct
gi|16 : GGC-G-CTT-G-TT-T-C-ATAAA-CTTT--G--C-AA-AGTA-T-tgt
gi|14 : acaGGC-G-CTT-G-TT-TTC-ATAAAGCTTT--GGAC-AA-AGTA-T-A-C-T-----A--TT--A-AAT----
gi|18 : GGC-G-CTT-T-TT-T-C-ATAAA-TTTT--G--C-AA-AGTA-tgt
gi|9 : acaGC-G-CTTTG-TT-T-C-AT-AA-TTTT--G--CAAA-AGTA-T-A-T-T----------------------------------A----------C----------------T------------AC----GT-----AG-T---A-T-A-C-TTTGCAG--AAA-GTTTTATG-ATAA-C-A------AG-C-ACC
gi|3 : GC-G-CTT-G-TT-TTC-ATAAA-CTTT--G--C-AATAGTA-T-G-C-T-----AT-AT--ATAA-----A-----------CA----------CAGGCGCTTGTTTTCATT------------AT----TTGGCCAAG-T---A-T-A-C-T---------AA-G-TTAATA-A-CA-C-A------GG-C-GCTTGct
gi|3 : GC-G-CCT-G-TG-T-T-ATTAA-CTT-----------AGTA-T-A-C-TTGGCCA--A---ATAATGAAAA-----------CAAGCGC-----C----------------TGTGTTTAT----AT----AT-----AG-C---A-T-A-C-TATT--GC-AAA-G-TTTATGAA-AA-C-A------AG-C-GC
gi|11 : C-G-CTT-G-TTCT-C-A-AAA-CTT---G--C-AA-AA------------------------AGT----A-----------TA----------C----------------T------------AT----AT-----AG-T---A-----C-TTTG---C-AAA-G-TTTATG-A-AA-C-A------AG-C-GCCTttg
gi|1 : TT-G-TT-T-C-ATAAA-CTTT--G--C-AA-AGTA-T-G-C-T--------AT--ATAACA---A-----------CA----------CATGTTG----------T------------AT----AT-----AA-TATCA-T-A-C-TTT---GC-AAA-G-TTTATG-A-AA-C-A------GG-C-GCCTGa
gi|8 : acaggcactaaaaaTT-G-TT-T-T--CAAA-CTTTT-G--C-AA-AG-A-T-G-C-T-----ATTAT--ATAAT----A-----------CA----------C-----------------------------AT----AT-----AG-C---A-T-A-C-TTTG---C-AAA-G-TT-ATG-A-AA-C-A------AG-C-GCCTG
gi|12 : a--ATAAT----A-----------TA----------T----------------T------------AT----AT-----AG-C---A-T-A-C-CTTG---C-AAA-G-TTTATG-A-AA-C-A------AG-C-GCCTG
gi|13 : aA----------T----------------T------------AT----AT-----AG-T---A-T-A-C-TTTG---C-AAA-G-TTTATG-A-AA-C-A------AG-C-GCCTGgaaacaagcgcctg
gi|14 : a----AT-----AG-T---A-T-A-C-TTTG--TCCAAA-GCTTTATG-A-AAAC-A------AG-C-GCCTGaaccaagcgcctg
gi|17 : attta---A-T-A-C-TTTG---C-AAA-G-TTTATG-A-AA-C-A------AG-C-GCCTGt
gi|16 : ---A-T-A-C-TTTG---C-AAA-G-TTTATG-A-AA-C-A------AG-C-GCCTGt
gi|18 : a-T-A-C-TTTG---C-AAA-A-TTTATG-A-AA-A-A------AG-C-GCCTG
1 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|15 ): ATGTTACTATACAAAATATATACATGTACCATGAGTAAAAA
Alignments
lowQualScore : 111 77777777777777777777777777777777777777777777777 22222
lowQualScore : 3 2 2 2 0 2 2 5 888 33333333333333333333333333333333333333333333333 77777 555 2 2 11111 2 5 5 5 2 2
lowQualScore : . . . . . . . . ... ............................................... ..... ... . . ..... . . . . . .
lowQualScore : 1 7 7 7 8 7 7 7 555 99999999999999999999999999999999999999999999999 11111 000 9 9 44444 9 7 7 7 9 9
consensus : GGC-GCTT-G-TTT-CATAAACTTT-GCAA-AGTAT-GCTA--ATATAAT--A-----------CAC----------------T------------ATAT-----AGT---AT-AC-TTTGGC--AAA-G-TTTATG-A-AA-CAAG-CGCCTG
Reference ( family-3504 ) : GGC-GCTT-G-TTT-CATAAACTTT-GCAA-AGTAT-GCTA--ATATAAT--A-----------CAC----------------T------------ATAT-----AGT---AT-AC-TTTGGC--AAA-G-TTTATG-A-AA-CAAG-CGCCTG
gi|1 : TT-G-TTT-CATAAACTTT-GCAA-AGTAT-GCT---ATATAACA-A-----------CACATGTTG----------T------------ATAT-----AATATCAT-AC-TTT-GC--AAA-G-TTTATG-A-AA-CAGG-CGCCTG
gi|10 : acaggcactaaaaaGGC-GCTT-G-TTT-CATAAACTTT-GCAA-AGTATAACT---ATATA------------------------------------------------ATAT-----AGT---AT-AC-TTTGG---AAA-G-TTTATG-A-AA-CAAG-CGCCTG
gi|11 : GGC-GCTT-G-TTT-CATAAACTTT-GCAA-AGT-------------------------------AC----------------T------------ATAT-----AGT---AT-ACTTTTTGC---AA-G-TTT-TG-AGAA-CAAG-CGt
gi|12 : aGGC-GCTT-G-TTT-CATAAACTTT-GCAA-GGTAT-GCT---ATATAAT--A-----------TA------------------------------------------------------------------TTATG-A-AA-CAAG-CGCCTGa
gi|13 : acaAT----------------T------------ATAT-----AGT---AT-AC-TTTG-C--AAA-G-TTTATG-A-AA-CAAG-CGCCTG
gi|14 : aAT-----AGT---AT-AC-TTTGTCC-AAA-GCTTTATG-A-AAACAAG-CGCCTGaaccaagcgcctg
gi|16 : atttaGGC-GCTT-G-TTT-CATAAACTTT-GCAA-AGTAT-t
gi|17 : acaGGC-GCTT-G-TTT-CATAAACTTT-GCAA-AGTAT-
gi|18 : GGC-GCTT-T-TTT-CATAAATTTT-GCAA-AGTAtgt
gi|2 : acaGGC-GCTT-GTTTT-CATAAAC-TT-GCAA-AGTAT-ACTA--TTATAATAAA-----------CAT----------------TGATATGTTATTAATAT-----AGT---AA-AC-TTTTGC--AAAGG-TTTATG-A-AA-CAAGCCGCCT
gi|3 : caGC-GCTT-G-TTTTCATAAACTTT-GCAATAGTAT-GCTAT-ATATAA---A-----------CACAGGCGCTTGTTTTCATT------------ATTTGGCCAAGT---AT-AC-T--------AA-G-TTAATA-A-CA-CAGG-CGCTTG
gi|4 : GGC-GCTT-G-TTT-CATAA--TTT-GCAA-AGTATAGCTA--ATATAAT--AACATGATATGTTAT----------------T------------ATAT-----AGT---ATTAC-TTTG-C--AA--G-TTTATGGA-AA-CAAG-CGCC
gi|5 : caGGCTGCTT-G-TTT-CATAAACTTT-GCGA-AGTAT-GC-G--ATGTAACA-A-----------CACATGTTGT---------T------------ATAT-----AGC---AT-AC-TTT-GC--AAA-G-TTTATG-A-AA-AAAG-TGCCT
gi|6 : caGGC-GCTT-G-TTT-CATAAACTTT-GCAA-AGTAT-ACTA--ATATAAT--A-----------CAC----------------T------------ATAT-----AGT---AT-AC-TTTGGC--AAA-G-TTTATG-A-AA-CAAG-CGCCTG
gi|7 : GGC--CTT-G-TTT-CATAA-CTTT-GCAA-AGTAT-GCT---ATATAAT--A-----------CAA----------------T-------------TAT------GC---AT-AC-TTT-GC--AAA-G-TTTATGAA-AA-CAAG-CGCCTG
gi|8 : TT-G-TTT-T-CAAACTTTTGCAA-AG-AT-GCTATTATATAAT--A-----------CAC-----------------------------ATAT-----AGC---AT-AC-TTTG-C--AAA-G-TT-ATG-A-AA-CAAG-CGCCTGct
gi|9 : aGC-GCTTTG-TTT-CATAA-TTTT-GCAA-A--------A--GTATATT--A-----------C------------------T------------ACGT-----AGT---AT-AC-TTT-GCAGAAA-GTTTTATG-ATAA-CAAG-CACC
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|15 ): ATGTTACTATACAAAATATATACATGTACCATGAGTAAAAA
Alignments
lowQualScore : 111 77777777777777777777777777777777777777777777777 22222
lowQualScore : 3 2 2 2 0 2 2 5 888 33333333333333333333333333333333333333333333333 77777 555 2 2 11111 2 5 5 5 2 2
lowQualScore : . . . . . . . . ... ............................................... ..... ... . . ..... . . . . . .
lowQualScore : 1 7 7 7 8 7 7 7 555 99999999999999999999999999999999999999999999999 11111 000 9 9 44444 9 7 7 7 9 9
consensus : GGC-GCTT-G-TTT-CATAAACTTT-GCAA-AGTAT-GCTA--ATATAAT--A-----------CAC----------------T------------ATAT-----AGT---AT-AC-TTTGGC--AAA-G-TTTATG-A-AA-CAAG-CGCCTG
Reference ( family-3504 ) : GGC-GCTT-G-TTT-CATAAACTTT-GCAA-AGTAT-GCTA--ATATAAT--A-----------CAC----------------T------------ATAT-----AGT---AT-AC-TTTGGC--AAA-G-TTTATG-A-AA-CAAG-CGCCTG
gi|1 : TT-G-TTT-CATAAACTTT-GCAA-AGTAT-GCT---ATATAACA-A-----------CACATGTTG----------T------------ATAT-----AATATCAT-AC-TTT-GC--AAA-G-TTTATG-A-AA-CAGG-CGCCTG
gi|10 : acaggcactaaaaaGGC-GCTT-G-TTT-CATAAACTTT-GCAA-AGTATAACT---ATATA------------------------------------------------ATAT-----AGT---AT-AC-TTTGG---AAA-G-TTTATG-A-AA-CAAG-CGCCTG
gi|11 : GGC-GCTT-G-TTT-CATAAACTTT-GCAA-AGT-------------------------------AC----------------T------------ATAT-----AGT---AT-ACTTTTTGC---AA-G-TTT-TG-AGAA-CAAG-CGt
gi|12 : aGGC-GCTT-G-TTT-CATAAACTTT-GCAA-GGTAT-GCT---ATATAAT--A-----------TA------------------------------------------------------------------TTATG-A-AA-CAAG-CGCCTGa
gi|13 : acaAT----------------T------------ATAT-----AGT---AT-AC-TTTG-C--AAA-G-TTTATG-A-AA-CAAG-CGCCTG
gi|14 : aAT-----AGT---AT-AC-TTTGTCC-AAA-GCTTTATG-A-AAACAAG-CGCCTGaaccaagcgcctg
gi|16 : atttaGGC-GCTT-G-TTT-CATAAACTTT-GCAA-AGTAT-t
gi|17 : acaGGC-GCTT-G-TTT-CATAAACTTT-GCAA-AGTAT-
gi|18 : GGC-GCTT-T-TTT-CATAAATTTT-GCAA-AGTAtgt
gi|2 : acaGGC-GCTT-GTTTT-CATAAAC-TT-GCAA-AGTAT-ACTA--TTATAATAAA-----------CAT----------------TGATATGTTATTAATAT-----AGT---AA-AC-TTTTGC--AAAGG-TTTATG-A-AA-CAAGCCGCCT
gi|3 : caGC-GCTT-G-TTTTCATAAACTTT-GCAATAGTAT-GCTAT-ATATAA---A-----------CACAGGCGCTTGTTTTCATT------------ATTTGGCCAAGT---AT-AC-T--------AA-G-TTAATA-A-CA-CAGG-CGCTTG
gi|4 : GGC-GCTT-G-TTT-CATAA--TTT-GCAA-AGTATAGCTA--ATATAAT--AACATGATATGTTAT----------------T------------ATAT-----AGT---ATTAC-TTTG-C--AA--G-TTTATGGA-AA-CAAG-CGCC
gi|5 : caGGCTGCTT-G-TTT-CATAAACTTT-GCGA-AGTAT-GC-G--ATGTAACA-A-----------CACATGTTGT---------T------------ATAT-----AGC---AT-AC-TTT-GC--AAA-G-TTTATG-A-AA-AAAG-TGCCT
gi|6 : caGGC-GCTT-G-TTT-CATAAACTTT-GCAA-AGTAT-ACTA--ATATAAT--A-----------CAC----------------T------------ATAT-----AGT---AT-AC-TTTGGC--AAA-G-TTTATG-A-AA-CAAG-CGCCTG
gi|7 : GGC--CTT-G-TTT-CATAA-CTTT-GCAA-AGTAT-GCT---ATATAAT--A-----------CAA----------------T-------------TAT------GC---AT-AC-TTT-GC--AAA-G-TTTATGAA-AA-CAAG-CGCCTG
gi|8 : TT-G-TTT-T-CAAACTTTTGCAA-AG-AT-GCTATTATATAAT--A-----------CAC-----------------------------ATAT-----AGC---AT-AC-TTTG-C--AAA-G-TT-ATG-A-AA-CAAG-CGCCTGct
gi|9 : aGC-GCTTTG-TTT-CATAA-TTTT-GCAA-A--------A--GTATATT--A-----------C------------------T------------ACGT-----AGT---AT-AC-TTT-GCAGAAA-GTTTTATG-ATAA-CAAG-CACC
blockSeqs : T T T T T T A ATT ACACAGGCGCTTGTTTTCATT GGCCA . T T GTCC G C G G A C
blockSeqs : . . . . . . A AT TAAACATTGATATGTTATTA . . . . GCAG . T A T . .
blockSeqs : . . . . . . . A TAACATGATATGTTATT . . . . TGC . . . . . .
blockSeqs : . . . . . . . A CAACACATGTTGTT . . . . TGC . . . . . .
blockSeqs : . . . . . . . G TACACT . . . . GGC . . . . . .
blockSeqs : . . . . . . . A TACAAT . . . . GG . . . . . .
blockSeqs : . . . . . . . A TACAC . . . . GC . . . . . .
blockSeqs : . . . . . . . . TATA . . . . GC . . . . . .
blockSeqs : . . . . . . . . TACT . . . . GC . . . . . .
blockSeqs : . . . . . . . . ACT . . . . GC . . . . . .
blockSeqs : . . . . . . . . . . . . . GC . . . . . .
blockSeqs : . . . . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . . . . . . .
blockSeqs : . . . . .
blockSeqCons : A** TACACT***************************************** ***
originalCons : GGC-GCTT-G-TTT-CATAAACTTT-GCAA-AGTAT-GCTA--ATATAAT--A-----------CAC----------------T------------ATAT-----AGT---AT-AC-TTTGGC--AAA-G-TTTATG-A-AA-CAAG-CGCCTG
finalCons : GGC-GCTT-G-TTT-CATAAACTTT-GCAA-AGTAT-GCTA--ATATAATACACT-----------------------------------------ATAT-----AGT---AT-AC-TTTGGC--AAA-G-TTTATG-A-AA-CAAG-CGCCTG
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|15 ): ATGTTACTATACAAAATATATACATGTACCATGAGTAAAAA
Alignments
lowQualScore : 111 77777777777777777777777777777777777777777777777 22222
lowQualScore : 3 2 2 2 0 2 2 5 888 33333333333333333333333333333333333333333333333 77777 555 2 2 11111 2 5 5 5 2 2
lowQualScore : . . . . . . . . ... ............................................... ..... ... . . ..... . . . . . .
lowQualScore : 1 7 7 7 8 7 7 7 555 99999999999999999999999999999999999999999999999 11111 000 9 9 44444 9 7 7 7 9 9
consensus : GGC-GCTT-G-TTT-CATAAACTTT-GCAA-AGTAT-GCTA--ATATAAT--A-----------CAC----------------T------------ATAT-----AGT---AT-AC-TTTGGC--AAA-G-TTTATG-A-AA-CAAG-CGCCTG
Reference ( family-3504 ) : GGC-GCTT-G-TTT-CATAAACTTT-GCAA-AGTAT-GCTA--ATATAAT--A-----------CAC----------------T------------ATAT-----AGT---AT-AC-TTTGGC--AAA-G-TTTATG-A-AA-CAAG-CGCCTG
gi|1 : TT-G-TTT-CATAAACTTT-GCAA-AGTAT-GCT---ATATAACA-A-----------CACATGTTG----------T------------ATAT-----AATATCAT-AC-TTT-GC--AAA-G-TTTATG-A-AA-CAGG-CGCCTG
gi|10 : acaggcactaaaaaGGC-GCTT-G-TTT-CATAAACTTT-GCAA-AGTATAACT---ATATA------------------------------------------------ATAT-----AGT---AT-AC-TTTGG---AAA-G-TTTATG-A-AA-CAAG-CGCCTG
gi|11 : GGC-GCTT-G-TTT-CATAAACTTT-GCAA-AGT-------------------------------AC----------------T------------ATAT-----AGT---AT-ACTTTTTGC---AA-G-TTT-TG-AGAA-CAAG-CGt
gi|12 : aGGC-GCTT-G-TTT-CATAAACTTT-GCAA-GGTAT-GCT---ATATAAT--A-----------TA------------------------------------------------------------------TTATG-A-AA-CAAG-CGCCTGa
gi|13 : acaAT----------------T------------ATAT-----AGT---AT-AC-TTTG-C--AAA-G-TTTATG-A-AA-CAAG-CGCCTG
gi|14 : aAT-----AGT---AT-AC-TTTGTCC-AAA-GCTTTATG-A-AAACAAG-CGCCTGaaccaagcgcctg
gi|16 : atttaGGC-GCTT-G-TTT-CATAAACTTT-GCAA-AGTAT-t
gi|17 : acaGGC-GCTT-G-TTT-CATAAACTTT-GCAA-AGTAT-
gi|18 : GGC-GCTT-T-TTT-CATAAATTTT-GCAA-AGTAtgt
gi|2 : acaGGC-GCTT-GTTTT-CATAAAC-TT-GCAA-AGTAT-ACTA--TTATAATAAA-----------CAT----------------TGATATGTTATTAATAT-----AGT---AA-AC-TTTTGC--AAAGG-TTTATG-A-AA-CAAGCCGCCT
gi|3 : caGC-GCTT-G-TTTTCATAAACTTT-GCAATAGTAT-GCTAT-ATATAA---A-----------CACAGGCGCTTGTTTTCATT------------ATTTGGCCAAGT---AT-AC-T--------AA-G-TTAATA-A-CA-CAGG-CGCTTG
gi|4 : GGC-GCTT-G-TTT-CATAA--TTT-GCAA-AGTATAGCTA--ATATAAT--AACATGATATGTTAT----------------T------------ATAT-----AGT---ATTAC-TTTG-C--AA--G-TTTATGGA-AA-CAAG-CGCC
gi|5 : caGGCTGCTT-G-TTT-CATAAACTTT-GCGA-AGTAT-GC-G--ATGTAACA-A-----------CACATGTTGT---------T------------ATAT-----AGC---AT-AC-TTT-GC--AAA-G-TTTATG-A-AA-AAAG-TGCCT
gi|6 : caGGC-GCTT-G-TTT-CATAAACTTT-GCAA-AGTAT-ACTA--ATATAAT--A-----------CAC----------------T------------ATAT-----AGT---AT-AC-TTTGGC--AAA-G-TTTATG-A-AA-CAAG-CGCCTG
gi|7 : GGC--CTT-G-TTT-CATAA-CTTT-GCAA-AGTAT-GCT---ATATAAT--A-----------CAA----------------T-------------TAT------GC---AT-AC-TTT-GC--AAA-G-TTTATGAA-AA-CAAG-CGCCTG
gi|8 : TT-G-TTT-T-CAAACTTTTGCAA-AG-AT-GCTATTATATAAT--A-----------CAC-----------------------------ATAT-----AGC---AT-AC-TTTG-C--AAA-G-TT-ATG-A-AA-CAAG-CGCCTGct
gi|9 : aGC-GCTTTG-TTT-CATAA-TTTT-GCAA-A--------A--GTATATT--A-----------C------------------T------------ACGT-----AGT---AT-AC-TTT-GCAGAAA-GTTTTATG-ATAA-CAAG-CACC
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|15 ): ATGTTACTATACAAAATATATACATGTACCATGAGTAAAAA