lowQualScore : 1111 333 444444444444444 11111 555555555555555555555555555555555555555555555555555555555 111111111 3333333333333333 11111 11111111111 1111
lowQualScore : 9999 3 44 444 3 44 5 88 9 8 2 444444444444444 88888 44 555 888888888888888888888888888888888888888888888888888888888 77 6 3 3 888888888 2 0000000000000000 7 3 1 33333 4 22222222222 22 1 88 1 2222 0 2 2 333 2 2 44
lowQualScore : .... . .. ... . .. . .. . . . ............... ..... .. ... ......................................................... .. . . . ......... . ................ . . . ..... . ........... .. . .. . .... . . . ... . . ..
lowQualScore : 6666 1 22 555 1 22 6 44 2 2 3 111111111111111 00000 66 888 111111111111111111111111111111111111111111111111111111111 33 2 1 1 555555555 9 8888888888888888 0 7 3 00000 6 55555555555 66 9 00 9 1111 4 0 0 555 0 0 88
consensus : AAAATCTTACGATTA----AGA-T--GAA-AA-T--TTTAAAATAC-GGT-AATTCTTTTATAATTC-T--TCGC-TCAT-CTATTT-TT-GAATGAGCA--AAA---C-----AT-----A----AGTA-T----A------T-A-AAT-------NGATG-AA-AA-ACTT-GC-A-TTCTTACT-CG--G---GG-CATAG---------TNGCACTCAGTTGAGTATAAGGCN----GANA------C----AAAA--TTT-TN-ATC-TT----AGTCG-TA-AGA---T-T-TTTT--GTGAAAA
Reference ( gi|5 ) : AAAATCTTACGATTA----AGA-T--GAC-TA-T--TTCAAAATAC-AGT-AATTCATTTATAATTC-A--TCAT-TCAT-CTATTT-TC-AAATGAGCA--AAA---C-----AT-----A----AGTA-T----A------T-A-AAT-------TGATG-AC-AA-GCTT-GC-A-TTCTTACT-TG--G---GG-CATAG---------TGGCACCCAGCTGAGCATAAGGCT----GACA------C----AAAA--TTT-TG-ATC-TT----AGTCG-TA-AGA---T-T-TTTT--GTGAAAA
gi|4 : AAAACCTTACGGTTA----AGA---------------TTAAA---------AATTCTTTTATAATTT-T--TCAC-TCAT-GTATCT-CT-GAATTGGCA--AAA---C-----A------A----AGTG-C----A------C-ACAGC-------TGA-A-AA-AA-ATTT-GC-A-TTCTTATT-CC--G---GG-CATAG---------TTGCACGCAGTTGAGTATAGAGCA----GAGA------C----AAAA--ATT-TC-ATC-AT----ATTCG-TA-AGA---T-T-TTGT--GTAAAAA
gi|15 : accatattcacaaaAAAATCTTACGATTATTAAAGA-T--GAA-AA-T--TTTAAAATAC-GGTTAACTCTTTTATAATTC---------T--T-CTATTT-TT-GAATGAGCA--AAA---C-----ATTTTATA----AGTA-T----A------T-G-AGT-------AAATG-GA-AA-ACTT-GC-A-TTCTTACT-TA--G---GG-CATAGTATTAAAATTAGCACTCAGTTGAGtgg
gi|3 : cctattcacaaAAACTTTTATAATTA----AGA-T--GGA-AA-T--TTTAAAATAC-TGT-AATTAATGTATGATTT-T--TAAC-TCAT---ATTTATCTGAATGAGCA--AAAGTAC-----AT-----ACC--GGTA-C----A------T-G-AGT-----------G-AA-AA-ACTA-GC-A-GTTTTACT-TA--G---GG-TATAG---------TTAAACTCACTTGAGTATAAGGCA----GAGA------C----AAAA--TTT-TA-AT--TT----AATTT-TA-AGA---T-T-TGTT--GTG
gi|19 : gcccttttcacagAAAATCT-ACGACTA----AGA-TCAGAA--A-T--TCCAAAACACCAGT-AATTCTTTTATAATTC-T--TCGT-TCAT-CTATTT-TTGAAATGAGTC--AAA---C-----TT-----A----AGTACT----A------T-A-CAT-------GAATG-ACAAA-ACTTGGC-A-TTCTTACTGCA--G---GG-CATGG---------T
gi|16 : tggcccttttcacaaAAAATCTTACGATTATTAAAGA-T--GAA-AA-T--TTTAAAATAC-GGTTAACTCTTTTATAATTC---------T--T-CTATTT-TT-GAATGAGCA--AAA---C-----ATTTTATA----AGTA-TCAGAG------T-A-AAT-------GGA------AA-ACTT-GC-A-TTCTTACT-TA--G---GG-CATAG---------Ttg
gi|17 : ctattcacaaAAAATCTTACGATTATTAAAGA-T--GAA-AAAT--TTTAAAATAC-GGTTAACTCTTTTATAATTC---------T--T-CTATTT-TT-GAATGAGCA--AAA---C-----ATTTAT-AT---AGTA-T----ACTGAGAT-A-AAT-------GG--G-A--AA-ACTT-GC-A-TTCTTACT-TA--G---GG-CATAGTAATTAAATTAGCACTCAGTTGAattaaaattagcactcagtttag
gi|13 : cacaaAAACTCTTACGATTA----AGA-T--GAC-AA-T--TTTGAAGCAC-TGT-AATTAGTTT-TAATTCTC--CCCC-TCATATTACTT-----AATAAGCA--AAA---C------T-----A----AG--------A------T-A-AAC-------TGA---------------C-A-TTCTTACT-CA--G---GG-CATCG---------TTTCAC----TTGAGTATAGGGTA----GAAA------C----AAA-----------------------CG-TA-AGA---C-G-TTTT--GTGAAAA
gi|14 : gtgacccttttcacaAACATCTTACGATTA----AGA-T--GGA-AA-T--TTTAAAATAC-GAT-AATACTTTT-TGATTC-T--TCAT-TCAA-CTATTT-TT-GAATGAGCA--AAA---CTTATTAT-----ATATTAGCA-T----A------T-A-GAT-------AGGTG-AA-AA-ACTT-GC-ATTTCTCATT-T-----------ATAG---------TAGtggcca
gi|6 : catttacacaaaAAAATCTTACAAAGA----AGA-T--TAA-AA-A--TTTAAAACAC-CAT-CCTTCTTTTATGATTC-T--TCGC-TCGT-ATTTTT-CT-GAATAAGCA--ATA---T-----A------A----AGTA-C----A------C-A-CAC-------AGGTG-AT-AACACTT-GC-A-TTCTTACT-C---A---GA-CATAG---------TTGCACTCAGacatagaggttgaacactgcat
gi|23 : tggccctttaattttcaccaaaAAAATCTTACGATTA----AGA-T--GAA-AA-T--TTCAAAATAC-AGT-TATTCATTTATAATTC-tatagagaagaaacagatttttttttggtgaaa
gi|9 : ccttttcacaaCTTACGATTA----AGA-T--GAA--A-T--TTCAAAATAC-AGT-AATTCATTTACAATTC-T--TCAT-TCCT-CTGTTT-TC-TAATGAGCA--AAA---C-----TT-----G----AGTA------A------T-A-AAT-------AGATG-AC-AA-GCTT-GC-A-ATCTTACT-CG--G---G--CATAG---------TGGCACCCAGCTGAGCATAAGGTT----GAAA------C----AAAA--TTT-TG-ATC-TT----AGTCG-T--AGA---T-TGTTTT--GTAAAAAtt
gi|11 : TA----GGA-T--GAAATG-TGGTTAAAGATAC-AGT-AACTCATTT-TAATTA-ACTTCATGTCACGCTATTT-TC-GAATGAGCAAGAAA---C-----TTG----A----AGAA-A----A------TAA-AAT-------AGATGAAC-AA-ACTTGGCAA-TTCTTAC--TGAAA---GG-CATAA---------------------GAGTA-AAGGCT----GAAA------CAGGAAAAG--GTT-TG-ATCATT----AGACG-TA-ACA---T-T-TTTA--GTGAag
gi|18 : TA----AGAAT--GAA-AA-T--TT-AAAACAT-TGT-CATTCTTTTATGATT-----------------ATTT-CT-GAATAAGCA--AAA---C-----A------A----AGTA-CTC--A------T-A-CATGTACAAGTGATA-A---A-ACGT-GC-A-TTC--------------------AG---------TA-----CAG---AGCA----GC-----GACA------------AAA--TTT-GT-ATC-TT----AGTCGTTA-AGATTTT-T-TTTT--GTGAAAA
gi|20 : T-----A----AGTA-TG---A------T-G-A---------TAATT-AA-AA-GTTG-GC-A-TTCTCTCTATG--GTCTGATCGTAG---------TGACA---AACTGA---TACCACTTTGTGGCA------------------TT-TG-A-C-AT----GGAC--TA-AGA---T-T-TTTT--GTGAAAAtgga
gi|22 : ttcagtgaaatacatat--G---GG-CATAG---------CTGCGCTCAGTTGAGTATGGAGTA----TAGA------C----GAAA--TGT-TT-ATC-TT----TGTgggcca
gi|25 : aaacattgtcagtcttgtatacaaGTTGAGTATAAGGCT----GACA------C----GAAA--TTT-TG-ATC-TT----AGTCA-TA-AGA---T-T-TTTT--GTGGAAAa
gi|27 : GAGTATAAGGCT----GACA------C----GAAA--TTT-TG-ATC-TT----AGTCA-TA-AGA---T-T-TTTT--GTGAAAgggc
gi|24 : ACAAGACT----GACAATGTTTT----AAAA--TTT-TA-ATC-TT----AATCG-CA-AGA---C-T-TTTT--GTGGAAAg
gi|26 : tatAAGGTA----GAGA------C----AAAAATTTT-CT-CTC-TT----AGTTA-TATAAA---T-T-TTTT--GTGAAAAggg
gi|13 : cc------C----AAAA--TTG-TC-ATC-TT----AATCG-TA-AGA-----G-TTTT--GTGAAAAggg
gi|15 : gtgaccc----AAAA--TTT-TC-ATC-TTTAATAATCG-TA-AGA---T-T-TTTT--GTGAAaagcactgtaattagttttaattctccccctcatattacttaataagcaaaactaagataaactgacattcttactcagggcatcgtttcacttgagtatagggtagaaacaaacgtaagacgttttgtgaaaatggcca
gi|16 : ccta----AAAA--TTT-TC-ATC-TTTAATAATCG-TA-AGA---T-T-TTTT--GTGAAaaaatacggttaactcttttataattcttctatttttgaatgagcaaaacattttataagtatatgagtaaatggaaaacttgcattcttacttagggcatagtattaaaattagcactcagttgag
gi|17 : cta----AAAA--TTT-TTCATC-TTTAATAATCG-TA-AGA---T-T-TTTT--GTGaaaatacggttaactcttttataattcttctatttttgaatgagcaaaacattttataagtatcagagtaaatggaaaacttgcattcttacttagggcatagtattaaaattagcactcagtttag
gi|14 : ----AAAA--TTT-CC-ATC-TT----AATCG-TA-AGA---TGT-TTTT--GTGTAAAaaaatacggttaactcttttataattcttctatttttgaatgagcaaaacatttatatagtatactgagataaatgggaaaacttgcattcttacttagggcatagtaattaaattagcactcagttga
gi|6 : ca----AAAT--TTT-TA-ATC-TT----CTTTG-TA-AGA---T-T-TTTTTGGTGAAAAaaaatacgataatactttttgattcttcattcaactatttttgaatgagcaaaacttattatatattagcatatagataggtgaaaaacttgcatttctcatttatagtagacatagaggttgaacactgcat
gi|4 : tggccctttaaAAT--TTT-TA-ATC-TT----AACCG-TA-AGG---T-T-TTTTT-GTGAAaaaacaccatccttcttttatgattcttcgctcgtatttttctgaataagcaatataaagtacacacacaggtgataacacttgcattcttactcagacatagttgcactcagtatagagaagaaacagatttttttttggtgaaa
gi|23 : accataAAA--TTT-TC-ATC-TT----AATCG-TA-AGA---T-T-TTTT--GTGAAAActtttataatttttcactcatgtatctctgaattggcaaaacaaagtgcacacagctgaaaaaaatttgcattcttattccgggcatagttgcacgcagttgagtatagagcagagacaaaaatttcatcatattcgtaagattttgtgtaaaaatgg
gi|19 : ccAA--TTTCTG-ATC-TT----AGTCG-T--AGA---T-T-TTTT--GTGAAAAcaaaatacagttattcatttataattctt
7 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|1 ): ACTGTAAATCACATTATTTTTTTTGGTTCACAAGAACATTATTTACACATGATTTTGCAAGACTAAGACATTTGCAAAACTCTAGAAATCTCACAAATAAGCAATAAATAATGATTTCTGAAAGTTATGTTTCATGAAATACATCACTTCATTCACAAAATAATTCGGNTAAGCAATAAATAATGATTTCTGAAAGTTATATTTCATGAAATACATCACTTCATTCACAAAAAAATTCATTTTTGCAAAATAAAAGTGATTTAAAGTATTACAATGCAAATC
Unaligned ( gi|2 ): AACAGACTGAGAGTATAAAATACTGTAAATCACTTTTTGCTCATGTGAACTTTATTTATGTAAACGTTGGCGAGACTAACATTCGTAAAAATATTAGTTCTTGCAAATAAACTCTTATGTACAGAAGACTTTATATGCAATAACGATTCATTAAAATTTTGTCTTGTGAATAAATACATCAATGTATCCACGCAAAAATAAAGTCTCACGAAATAAAAGTGACCTACAGTAGTCAG
Unaligned ( gi|7 ): GTGGCCCCATTCAAATGAAATCCTATGATTAAGATAAAAAAATTTTAAAAGCACTGTAATATTCTTTGATGGACTATTTCTGATTATATACGAAGGTACATGTAATAAAACTTGCAGGGCATTTGCACTTGGCATTTATTTGTTTGAGTTCACAAGCCAGAGACAAAACTTCTTTTTGATAAGATTTTCTGTAAA
Unaligned ( gi|8 ): TACAGTAAATCACAAGTTAGTGACGAGAACTTTATTTACGTGTAACTTTGCGGGACTTTTGGAGTTCGAAAGAATTGAGCTCTTGCAAATATAAATTCTTTTACATGGAAGACTCCAGCAATGATTATTCTTAAACGTTGAATAAATACATCTTTTGATCGGCGCAAAGATAAAGTCTCATGATTAAAAGTG
Unaligned ( gi|10 ): ACTGTAAATCGCATTTCTTTTGCAACATTACTTGTAATTTCGCGAGATGAGTCATGAGCCAAAATTTAGTCATTAATCAAGTCATATAAATAGAAGGCGTAGGCAATATATAACGATTGATGAATGTTTTATCTCGTGAATGAATACACTGATGAGGTCCGGCAAAATAGATGTGATTTACAGTAAGTC
Unaligned ( gi|12 ): TGTAAAAGATGACATGCATGTACTGTGAAGCACATTTTATATGTACAAACATTATTTACTTGTAATTTCACAAGACTAGTCATTCGCAAAAATTTTGGTTGGGAAAATAAATTTTTAAATATAGAATACGTAGCAGTAAATTATGTTTTGTAAAAATTTTGGCCTTGTGAATAAATAAATAAAAG
Unaligned ( gi|21 ): AGTTTGTGTCTTTTGAATAGGTACATCATTGTTATCTTAGTGAAAATAAGATCTCACAAAACAGAAATAGTCAGCAGTA
Alignments
lowQualScore : 1111 333333333 33333333333333333 111 11111111111 22222 333333333 111111111111
lowQualScore : 7777 2 33 2 2 33 2 2 88 8 2 2 33 2 000000000 2 33 33 555 99999999999999999 000 7777 44444444444 2 5 2 2 00000 222222222 1 2 333333333333 44 1 1 888888 5555 33 2 4 2 2 2 444 2 2
lowQualScore : .... . .. . . .. . . .. . . . .. . ......... . .. .. ... ................. ... .... ........... . . . . ..... ......... . . ............ .. . . ...... .... .. . . . . . ... . .
lowQualScore : 0000 7 77 7 7 77 7 7 00 0 9 4 77 7 444444444 9 99 99 000 88888888888888888 222 8888 44444444444 9 7 9 9 55555 000000000 9 6 666666666666 22 0 0 222222 3333 11 2 7 2 5 5 444 5 5
consensus : AAAATCTTACGATTA----AGA-T--GA-AAA-TT--TTAAA-A-TAC-GGT-AATTCNTTTATAATT--CT-TCGC-TCAT-CTATTTCTG-A--ATGAGCA--AAA---C-----AT-----A----AGTA--CAT--A-AATAGA----TGA-A-AAACTT-GC-A-TTCTTACT-CG--GGGCATAG---------TNGCACTCAG-----------TTGAGT--ATAAGGCNGAGA------C----AAAA--TTT-TNATC-TTAGTCG-TA-AGA---T-T-TTTTGTGAAAA
Reference ( family-3270 ) : AAAATCTTACGATTA----AGA-T--GA-AAA-TT--TTAAA-A-TAC-GGT-AATTCTTTTATAATT--CT-TCGC-TCAT-CTATTTTTG-A--ATGAGCA--AAA---C-----AT-----A----AGTA--TAT--A-AATNGA----TGA-A-AAACTT-GC-A-TTCTTACT-CG--GGGCATAG---------TNGCACTCAG-----------TTGAGT--ATAAGGCNGANA------C----AAAA--TTT-TNATC-TTAGTCG-TA-AGA---T-T-TTTTGTGAAAA
gi|11 : TA----GGA-T--GA-AAT-GTGGTTAAAGA-TAC-AGT-AACTCATTT-TAATTAACT-TCATGTCACGCTATTTTCG-A--ATGAGCAAGAAA---C-----TTG----A----AGAA--AATA-A-AATAGA----TGA-ACAAACTTGGCAA-TTCTTACT--GAAAGGCATAA--------------------------------GAGT--A-AAGGCTGAAA------CAGGAAAAG--GTT-TGATCATTAGACG-TA-ACA---T-T-TTTAGTGA
gi|13 : AAACTCTTACGATTA----AGA-T--GA-CAA-TT--TTGAA-G-CAC-TGT-AATTAGTTT-TAATT--CTCCCCC-TCA---TATTACTT-A--ATAAGCA--AAA---C------T-----A----AG-----AT--A-AACTGA------------------C-A-TTCTTACT-CA--GGGCATCG---------TTTCAC---------------TTGAGT--ATAGGGTAGAAA------C----AAA------------------CG-TA-AGA---C-G-TTTTGTGAAAA
gi|14 : gtgacccttttcaca----AAAA--TTT-CCATC-TTAATCG-TA-AGA---TGT-TTTTGTGTAAAtggcca
gi|14 : caAACATCTTACGATTA----AGA-T--GG-AAA-TT--TTAAA-A-TAC-GAT-AATACTTTT-TGATT--CT-TCAT-TCAA-CTATTTTTG-A--ATGAGCA--AAA---CTTATTAT-----ATATTAGCA--TAT--A-GATAGG----TGA-A-AAACTT-GC-ATTTCTCATT--------TATAG---------TAGaaaatacgataatactttttgattcttcattcaactatttttgaatgagcaaaacttattatatattagcatatagataggtgaaaaacttgcatttctcatttatagtagacatagaggttgaacactgcat
gi|15 : catttacacaaaAAAATCTTACGATTATTAAAGA-T--GA-AAA-TT--TTAAA-A-TAC-GGTTAACTCTTTTATAATT--CT-TC---------TATTTTTG-A--ATGAGCA--AAA---C-----ATTTTATA----AGTA--TAT--G-AGTAAA----TGG-A-AAACTT-GC-A-TTCTTACT-TA--GGGCATAGTATTAAAATTAGCACTCAG-----------TTGAGacatagaggttgaacactgcat
gi|16 : cctattcacaaAAAATCTTACGATTATTAAAGA-T--GA-AAA-TT--TTAAA-A-TAC-GGTTAACTCTTTTATAATT--CT-TC---------TATTTTTG-A--ATGAGCA--AAA---C-----ATTTTATA----AGTA--TCA--G-AGTAAA----TGG-A-AAACTT-GC-A-TTCTTACT-TA--GGGCATAGTATTAAAATTAGCACTCAG-----------TTTAG
gi|17 : ctattcacaaAAAATCTTACGATTATTAAAGA-T--GA-AAAATT--TTAAA-A-TAC-GGTTAACTCTTTTATAATT--CT-TC---------TATTTTTG-A--ATGAGCA--AAA---C-----ATTTAT-AT---AGTA--TACTGA-GATAAA----TGGGA-AAACTT-GC-A-TTCTTACT-TA--GGGCATAGTAATTAAATTAGCACTCAG-----------TTGA
gi|18 : cacaaTA----AGAAT--GA-AAA-TT--T-AAA-A-CAT-TGT-CATTCTTTTATGAT-----------------TATTTCTG-A--ATAAGCA--AAA---C-----A------A----AGTACTCAT--A-CATGTACAAGTGATA-AAACGT-GC-A-TTC----------------AG---------TA-----CAG-----------------------AGCAGCGA------C----AAAA--TTT-GTATC-TTAGTCGTTA-AGATTTT-T-TTTTGTGAAAA
gi|19 : AA--TTTCTGATC-TTAGTCG-TA--GA---T-T-TTTTGTGAAAAtgga
gi|19 : tggcccAAAATCT-ACGACTA----AGA-T--CAGAAA-TT--CCAAA-A-CACCAGT-AATTCTTTTATAATT--CT-TCGT-TCAT-CTATTTTTGAA--ATGAGTC--AAA---C-----TT-----A----AGTAC-TAT--A-CATGAA----TGACA-AAACTTGGC-A-TTCTTACTGCA--GGGCATGG---------TTGccaaaacaccagtaattcttttataattcttcgttcatctatttttgaaatgagtcaaacttaagtactatacatgaatgacaaaacttggcattcttactgcagggcatggttg
gi|22 : tggcccttttcacaa--GGGCATAG---------CTGCGCTCAG-----------TTGAGT--ATGGAGTATAGA------C----GAAA--TGT-TTATC-TTTGT
gi|23 : aaacattgtcagtcttgtatacaaAAA--TTT-TCATC-TTAATCG-TA-AGA---T-T-TTTTGTGAAAAa
gi|23 : ccAAAATCTTACGATTA----AGA-T--GA-AAA-TT--TCAAA-A-TAC-AGT-TATTCATTTATAATT--CT-Tcaaaatacagttattcatttataattctt
gi|24 : ccttttcacaaT--ACAAGACTGACAATGTTTT----AAAA--TTT-TAATC-TTAATCG-CA-AGA---C-T-TTTTGTGGAAA
gi|25 : taG-----------TTGAGT--ATAAGGCTGACA------C----GAAA--TTT-TGATC-TTAGTCA-TA-AGA---T-T-TTTTGTGGAAAggg
gi|26 : AAGGTAGAGA------C----AAAAATTTT-CTCTC-TTAGTTA-TATAAA---T-T-TTTTGTGAAAAgggc
gi|27 : ccGAGT--ATAAGGCTGACA------C----GAAA--TTT-TGATC-TTAGTCA-TA-AGA---T-T-TTTTGTGAAAggg
gi|3 : ----AAAA--TTT-CCATC-TTAATTA-TA-AAA---G-T-TTCTGTGAAAAg
gi|3 : gcccAAACTTTTATAATTA----AGA-T--GG-AAA-TT--TTAAA-A-TAC-TGT-AATTAATGTATGATT--TT-TAAC-TCAT-ATTTATCTG-A--ATGAGCA--AAAGTAC-----AT-----ACC--GGTA--CAT--G-AGT--------GA-A-AAACTA-GC-A-GTTTTACT-TA--GGGTATAG---------TTAAACTCAC-----------TTGAGT--ATAAGGCAGAGA------C----AAAA--TTT-TAAT--TTAATTT-TA-AGA---T-T-TGTTGTGaaaatactgtaattaatgtatgatttttaactcatatttatctgaatgagcaaaagtacataccggtacatgagtgaaaaactagcagttttacttagggtatagttaaactcacttgagtataaggcagagacaaaattttaatttaattttaagatttgttgtg
gi|4 : gcccttttcacagAAAACCTTACGGTTA----AGA-T--------------TAAA-A----------ATTCTTTTATAATT--TT-TCAC-TCAT-GTATCTCTG-A--ATTGGCA--AAA---C-----A------A----AGTG--CAC--ACAGCTGA-----AA-A-AAATTT-GC-A-TTCTTATT-CC--GGGCATAG---------TTGCACGCAG-----------TTGAGT--ATAGAGCAGAGA------C----AAAA--ATT-TCATC-ATATTCG-TA-AGA---T-T-TTGTGTAAAAA
gi|5 : accatattcacaaaAAAATCTTACGATTA----AGA-T--GA-CTA-TT--TCAAA-A-TAC-AGT-AATTCATTTATAATT--CA-TCAT-TCAT-CTATTTTCA-A--ATGAGCA--AAA---C-----AT-----A----AGTA--TAT--A-AATTGA----TGA-C-AAGCTT-GC-A-TTCTTACT-TG--GGGCATAG---------TGGCACCCAG-----------CTGAGC--ATAAGGCTGACA------C----AAAA--TTT-TGATC-TTAGTCG-TA-AGA---T-T-TTTTGTGAAAAtgg
gi|6 : AAAATCTTACAAAGA----AGA-T--TA-AAA-AT--TTAAA-A-CAC-CAT-CCTTCTTTTATGATT--CT-TCGC-TCGT-ATTTTTCTG-A--ATAAGCA--ATA---T-----A------A----AGTA--CAC--A-CACAGG----TGATA-ACACTT-GC-A-TTCTTACT-C---AGACATAG---------TTGCACTC----------------AGT--ATAGAGAAGAAA------C----AGAT--TTT-T--TT-TTGGT
gi|7 : tggccctttaattttcaccaaaAAATCCTATGATTA----AGA-TAAAA-AAA-TT--TTAAA-AGCAC-TGT-AAT---------ATT--CT-TTGA-TGGA-CTATTTCTG-ATTAT-------ATA---C-----GA-----A----GGTA--CAT--GTAAT-----------A-AAACTT-GC-A--------------GGGCAT-----------TTGCACTTGGCATTTATTTGTTTGAGTTCACAAGCCAGAGA------C----AAAA--CT-----TC-TTTTTGA-TA-AGA---T-T-TTCTGTAAAgaaa
gi|9 : gtggccccattcaaatgCTTACGATTA----AGA-T--GA-AA--TT--TCAAA-A-TAC-AGT-AATTCATTTACAATT--CT-TCAT-TCCT-CTGTTTTCT-A--ATGAGCA--AAA---C-----TT-----G----AGTA---AT--A-AATAGA----TGA-C-AAGCTT-GC-A-ATCTTACT-CG--GG-CATAG---------TGGCACCCAG-----------CTGAGC--ATAAGGTTGAAA------C----AAAA--TTT-TGATC-TTAGTCG-T--AGA---T-TGTTTTGTAAAAA
7 sequences could not be aligned to this reference sequence:
Unaligned ( gi|1 ): ACTGTAAATCACATTATTTTTTTTGGTTCACAAGAACATTATTTACACATGATTTTGCAAGACTAAGACATTTGCAAAACTCTAGAAATCTCACAAATAAGCAATAAATAATGATTTCTGAAAGTTATGTTTCATGAAATACATCACTTCATTCACAAAATAATTCGGNTAAGCAATAAATAATGATTTCTGAAAGTTATATTTCATGAAATACATCACTTCATTCACAAAAAAATTCATTTTTGCAAAATAAAAGTGATTTAAAGTATTACAATGCAAATC
Unaligned ( gi|2 ): AACAGACTGAGAGTATAAAATACTGTAAATCACTTTTTGCTCATGTGAACTTTATTTATGTAAACGTTGGCGAGACTAACATTCGTAAAAATATTAGTTCTTGCAAATAAACTCTTATGTACAGAAGACTTTATATGCAATAACGATTCATTAAAATTTTGTCTTGTGAATAAATACATCAATGTATCCACGCAAAAATAAAGTCTCACGAAATAAAAGTGACCTACAGTAGTCAG
Unaligned ( gi|8 ): TACAGTAAATCACAAGTTAGTGACGAGAACTTTATTTACGTGTAACTTTGCGGGACTTTTGGAGTTCGAAAGAATTGAGCTCTTGCAAATATAAATTCTTTTACATGGAAGACTCCAGCAATGATTATTCTTAAACGTTGAATAAATACATCTTTTGATCGGCGCAAAGATAAAGTCTCATGATTAAAAGTG
Unaligned ( gi|10 ): ACTGTAAATCGCATTTCTTTTGCAACATTACTTGTAATTTCGCGAGATGAGTCATGAGCCAAAATTTAGTCATTAATCAAGTCATATAAATAGAAGGCGTAGGCAATATATAACGATTGATGAATGTTTTATCTCGTGAATGAATACACTGATGAGGTCCGGCAAAATAGATGTGATTTACAGTAAGTC
Unaligned ( gi|12 ): TGTAAAAGATGACATGCATGTACTGTGAAGCACATTTTATATGTACAAACATTATTTACTTGTAATTTCACAAGACTAGTCATTCGCAAAAATTTTGGTTGGGAAAATAAATTTTTAAATATAGAATACGTAGCAGTAAATTATGTTTTGTAAAAATTTTGGCCTTGTGAATAAATAAATAAAAG
Unaligned ( gi|20 ): TTCAGTGAAATACATATTAAGTATGATGATAATTAAAAGTTGGCATTCTCTCTATGGTCTGATCGTAGTGACAAACTGATACCACTTTGTGGCATTTGACATGGACTAAGATTTTTTGTGAAAAGGGCCA
Unaligned ( gi|21 ): AGTTTGTGTCTTTTGAATAGGTACATCATTGTTATCTTAGTGAAAATAAGATCTCACAAAACAGAAATAGTCAGCAGTA
Alignments
lowQualScore : 1111 333333333 33333333333333333 1111 11111111111111 111 22222 333333333 111111111111
lowQualScore : 5555 2 33 2 2 33 2 2 88 7 1 1 33 2 000000000 2 33 33 555 99999999999999999 1111 11111111111111 222 33 5 2 2 00000 222222222 1 2 333333333333 44 1 0 5555 33 2 4 2 2 2 444 2 2
lowQualScore : .... . .. . . .. . . .. . . . .. . ......... . .. .. ... ................. .... .............. ... .. . . . ..... ......... . . ............ .. . . .... .. . . . . . ... . .
lowQualScore : 9999 5 44 5 5 44 5 5 44 5 9 7 77 7 444444444 9 99 99 000 88888888888888888 4444 22222222222222 222 99 7 9 9 55555 000000000 9 6 666666666666 66 0 7 3333 11 2 7 2 5 5 444 5 5
consensus : AAAATCTTACGATTA----AGA-T--GA-AAA-TT--TTAAA-A-TAC-GGT-AATTCTTTTATAATT--CT-TCGC-TCAT-CTATTTCTG-A--ATGAGCA--AA---AC-----AT-----A----AGTA--C-AT--A-AAT----AGATGA-A-AAA--CTT-GC-A-TTCTTACT-CG--GGGCATAG---------TNGCACTCAG-----------TTGAGT--ATAAGGCAGAGAC----AAAA--TTT-TNATC-TTAGTCG-TA-AGA---T-T-TTTTGTGAAAA
Reference ( family-3270 ) : AAAATCTTACGATTA----AGA-T--GA-AAA-TT--TTAAA-A-TAC-GGT-AATTCNTTTATAATT--CT-TCGC-TCAT-CTATTTCTG-A--ATGAGCA--AA---AC-----AT-----A----AGTA--C-AT--A-AAT----AGATGA-A-AAA--CTT-GC-A-TTCTTACT-CG--GGGCATAG---------TNGCACTCAG-----------TTGAGT--ATAAGGCNGAGAC----AAAA--TTT-TNATC-TTAGTCG-TA-AGA---T-T-TTTTGTGAAAA
gi|11 : TA----GGA-T--GA-AAT-GTGGTTAAAGA-TAC-AGT-AACTCATTT-TAATTAACT-TCATGTCACGCTATTTTCG-A--ATGAGCAAGAA---AC-----TTG----A----AGAA--A-ATA-A-AAT----AGATGA-ACAAA--CTTGGCAA-TTCTTACT--GAAAGGCATAA--------------------------------GAGT--A-AAGGCTGAAACAGGAAAAG--GTT-TGATCATTAGACG-TA-ACA---T-T-TTTAGTGA
gi|13 : AAACTCTTACGATTA----AGA-T--GA-CAA-TT--TTGAA-G-CAC-TGT-AATTAGTTT-TAATT--CTCCCCC-TCA---TATTACTT-A--ATAAGCA--AA---AC------T-----A----AG------AT--A-AAC-------TGA-------------C-A-TTCTTACT-CA--GGGCATCG---------TTTCAC---------------TTGAGT--ATAGGGTAGAAAC----AAA------------------CG-TA-AGA---C-G-TTTTGTGAAAA
gi|14 : gtgacccttttcaca----AAAA--TTT-CCATC-TTAATCG-TA-AGA---TGT-TTTTGTGTAAAtggcca
gi|14 : caAACATCTTACGATTA----AGA-T--GG-AAA-TT--TTAAA-A-TAC-GAT-AATACTTTT-TGATT--CT-TCAT-TCAA-CTATTTTTG-A--ATGAGCA--AA---ACTTATTAT-----ATATTAGCA--T-AT--A-GAT----AGGTGA-A-AAA--CTT-GC-ATTTCTCATT--------TATAG---------TAGaaaatacgataatactttttgattcttcattcaactatttttgaatgagcaaaacttattatatattagcatatagataggtgaaaaacttgcatttctcatttatagtagacatagaggttgaacactgcat
gi|15 : catttacacaaaAAAATCTTACGATTATTAAAGA-T--GA-AAA-TT--TTAAA-A-TAC-GGTTAACTCTTTTATAATT--CT-TC---------TATTTTTG-A--ATGAGCA--AA---AC-----ATTTTATA----AGTA--T-AT--G-AGT----AAATGG-A-AAA--CTT-GC-A-TTCTTACT-TA--GGGCATAGTATTAAAATTAGCACTCAG-----------TTGAGacatagaggttgaacactgcat
gi|16 : cctattcacaaAAAATCTTACGATTATTAAAGA-T--GA-AAA-TT--TTAAA-A-TAC-GGTTAACTCTTTTATAATT--CT-TC---------TATTTTTG-A--ATGAGCA--AA---AC-----ATTTTATA----AGTAT-C-A---G-AGT----AAATGG-A-AAA--CTT-GC-A-TTCTTACT-TA--GGGCATAGTATTAAAATTAGCACTCAG-----------TTTAG
gi|17 : ctattcacaaAAAATCTTACGATTATTAAAGA-T--GA-AAAATT--TTAAA-A-TAC-GGTTAACTCTTTTATAATT--CT-TC---------TATTTTTG-A--ATGAGCA--AA---AC-----ATTTAT-AT---AGTA--T-ACTGA-GAT----AAATGGGA-AAA--CTT-GC-A-TTCTTACT-TA--GGGCATAGTAATTAAATTAGCACTCAG-----------TTGA
gi|18 : cacaaTA----AGAAT--GA-AAA-TT--T-AAA-A-CAT-TGT-CATTCTTTTATGATT-----------------ATTTCTG-A--ATAAGCA--AA---AC-----A------A----AGTACTC-AT--A-CATGTACAAGTGATA-AAA--CGT-GC-A-TTC----------------AG---------TA-----CAG-----------------------AGCAGCGAC----AAAA--TTT-GTATC-TTAGTCGTTA-AGATTTT-T-TTTTGTGAAAA
gi|19 : AA--TTTCTGATC-TTAGTCG-TA--GA---T-T-TTTTGTGAAAAtgga
gi|19 : tggcccAAAATCT-ACGACTA----AGA-T--CAGAAA-TT--CCAAA-A-CACCAGT-AATTCTTTTATAATT--CT-TCGT-TCAT-CTATTTTTGAA--ATGAGTC--AA---AC-----TT-----A----AGTA--CTAT--A-CAT----GAATGACA-AAA--CTTGGC-A-TTCTTACTGCA--GGGCATGG---------TTGccaaaacaccagtaattcttttataattcttcgttcatctatttttgaaatgagtcaaacttaagtactatacatgaatgacaaaacttggcattcttactgcagggcatggttg
gi|22 : tggcccttttcacaa--GGGCATAG---------CTGCGCTCAG-----------TTGAGT--ATGGAGTATAGAC----GAAA--TGT-TTATC-TTTGT
gi|23 : aaacattgtcagtcttgtatacaaAAA--TTT-TCATC-TTAATCG-TA-AGA---T-T-TTTTGTGAAAAa
gi|23 : ccAAAATCTTACGATTA----AGA-T--GA-AAA-TT--TCAAA-A-TAC-AGT-TATTCATTTATAATT--CT-Tcaaaatacagttattcatttataattctt
gi|24 : ccttttcacaaAAAGTCTTGCGATTA----AGA-T--TA-AAA-TT--TTAAA-A-CAT-TGT-CAGTCTTGTATA
gi|24 : ----AAAA--TTT-TAATC-TTAATCG-CA-AGA---C-T-TTTTGTGGAAAttgtggaaaggg
gi|25 : tatacaagactgacaatgttttG-----------TTGAGT--ATAAGGCTGACAC----GAAA--TTT-TGATC-TTAGTCA-TA-AGA---T-T-TTTTGTGGAAAggg
gi|26 : AAGGTAGAGAC----AAAAATTTT-CTCTC-TTAGTTA-TATAAA---T-T-TTTTGTGAAAAgggc
gi|27 : ccGAGT--ATAAGGCTGACAC----GAAA--TTT-TGATC-TTAGTCA-TA-AGA---T-T-TTTTGTGAAAggg
gi|3 : ----AAAA--TTT-CCATC-TTAATTA-TA-AAA---G-T-TTCTGTGAAAAg
gi|3 : gcccAAACTTTTATAATTA----AGA-T--GG-AAA-TT--TTAAA-A-TAC-TGT-AATTAATGTATGATT--TT-TAAC-TCAT-ATTTATCTG-A--ATGAGCA--AAAGTAC-----AT-----ACC--GGTA--C-AT--G-A--------GTGA-A-AAA--CTA-GC-A-GTTTTACT-TA--GGGTATAG---------TTAAACTCAC-----------TTGAGT--ATAAGGCAGAGAC----AAAA--TTT-TAAT--TTAATTT-TA-AGA---T-T-TGTTGTGaaaatactgtaattaatgtatgatttttaactcatatttatctgaatgagcaaaagtacataccggtacatgagtgaaaaactagcagttttacttagggtatagttaaactcacttgagtataaggcagagacaaaattttaatttaattttaagatttgttgtg
gi|4 : gcccttttcacagAAAACCTTACGGTTA----AGA-T--------------TAAA-A----------ATTCTTTTATAATT--TT-TCAC-TCAT-GTATCTCTG-A--ATTGGCA--AA---AC-----A------A----AGTG--C-AC--A---C----AGCTGA-A-AAAAATTT-GC-A-TTCTTATT-CC--GGGCATAG---------TTGCACGCAG-----------TTGAGT--ATAGAGCAGAGAC----AAAA--ATT-TCATC-ATATTCG-TA-AGA---T-T-TTGTGTAAAAA
gi|5 : accatattcacaaaAAAATCTTACGATTA----AGA-T--GA-CTA-TT--TCAAA-A-TAC-AGT-AATTCATTTATAATT--CA-TCAT-TCAT-CTATTTTCA-A--ATGAGCA--AA---AC-----AT-----A----AGTA--T-AT--A-AAT----TGATGA-C-AAG--CTT-GC-A-TTCTTACT-TG--GGGCATAG---------TGGCACCCAG-----------CTGAGC--ATAAGGCTGACAC----AAAA--TTT-TGATC-TTAGTCG-TA-AGA---T-T-TTTTGTGAAAAtgg
gi|6 : AAAATCTTACAAAGA----AGA-T--TA-AAA-AT--TTAAA-A-CAC-CAT-CCTTCTTTTATGATT--CT-TCGC-TCGT-ATTTTTCTG-A--ATAAGCA--AT---AT-----A------A----AGTA--C-AC--A-CAC----AGGTGATA-ACA--CTT-GC-A-TTCTTACT-C---AGACATAG---------TTGCACTC----------------AGT--ATAGAGAAGAAAC----AGAT--TTT-T--TT-TTGGT
gi|7 : tggccctttaattttcaccaaaAAATCCTATGATTA----AGA-TAAAA-AAA-TT--TTAAA-AGCAC-TGT-AAT---------ATT--CT-TTGA-TGGA-CTATTTCTG-ATTAT-------AT---AC-----GA-----A----GGTA--C-AT--GTAAT-----------A-AAA--CTT-GC-A--------------GGGCAT-----------TTGCACTTGGCATTTATTTGTTTGAGTTCACAAGCCAGAGAC----AAAA--CT-----TC-TTTTTGA-TA-AGA---T-T-TTCTGTAAAgaaa
gi|9 : gtggccccattcaaatgCTTACGATTA----AGA-T--GA-AA--TT--TCAAA-A-TAC-AGT-AATTCATTTACAATT--CT-TCAT-TCCT-CTGTTTTCT-A--ATGAGCA--AA---AC-----TT-----G----AGTA----AT--A-AAT----AGATGA-C-AAG--CTT-GC-A-ATCTTACT-CG--GG-CATAG---------TGGCACCCAG-----------CTGAGC--ATAAGGTTGAAAC----AAAA--TTT-TGATC-TTAGTCG-T--AGA---T-TGTTTTGTAAAAA
7 sequences could not be aligned to this reference sequence:
Unaligned ( gi|1 ): ACTGTAAATCACATTATTTTTTTTGGTTCACAAGAACATTATTTACACATGATTTTGCAAGACTAAGACATTTGCAAAACTCTAGAAATCTCACAAATAAGCAATAAATAATGATTTCTGAAAGTTATGTTTCATGAAATACATCACTTCATTCACAAAATAATTCGGNTAAGCAATAAATAATGATTTCTGAAAGTTATATTTCATGAAATACATCACTTCATTCACAAAAAAATTCATTTTTGCAAAATAAAAGTGATTTAAAGTATTACAATGCAAATC
Unaligned ( gi|2 ): AACAGACTGAGAGTATAAAATACTGTAAATCACTTTTTGCTCATGTGAACTTTATTTATGTAAACGTTGGCGAGACTAACATTCGTAAAAATATTAGTTCTTGCAAATAAACTCTTATGTACAGAAGACTTTATATGCAATAACGATTCATTAAAATTTTGTCTTGTGAATAAATACATCAATGTATCCACGCAAAAATAAAGTCTCACGAAATAAAAGTGACCTACAGTAGTCAG
Unaligned ( gi|8 ): TACAGTAAATCACAAGTTAGTGACGAGAACTTTATTTACGTGTAACTTTGCGGGACTTTTGGAGTTCGAAAGAATTGAGCTCTTGCAAATATAAATTCTTTTACATGGAAGACTCCAGCAATGATTATTCTTAAACGTTGAATAAATACATCTTTTGATCGGCGCAAAGATAAAGTCTCATGATTAAAAGTG
Unaligned ( gi|10 ): ACTGTAAATCGCATTTCTTTTGCAACATTACTTGTAATTTCGCGAGATGAGTCATGAGCCAAAATTTAGTCATTAATCAAGTCATATAAATAGAAGGCGTAGGCAATATATAACGATTGATGAATGTTTTATCTCGTGAATGAATACACTGATGAGGTCCGGCAAAATAGATGTGATTTACAGTAAGTC
Unaligned ( gi|12 ): TGTAAAAGATGACATGCATGTACTGTGAAGCACATTTTATATGTACAAACATTATTTACTTGTAATTTCACAAGACTAGTCATTCGCAAAAATTTTGGTTGGGAAAATAAATTTTTAAATATAGAATACGTAGCAGTAAATTATGTTTTGTAAAAATTTTGGCCTTGTGAATAAATAAATAAAAG
Unaligned ( gi|20 ): TTCAGTGAAATACATATTAAGTATGATGATAATTAAAAGTTGGCATTCTCTCTATGGTCTGATCGTAGTGACAAACTGATACCACTTTGTGGCATTTGACATGGACTAAGATTTTTTGTGAAAAGGGCCA
Unaligned ( gi|21 ): AGTTTGTGTCTTTTGAATAGGTACATCATTGTTATCTTAGTGAAAATAAGATCTCACAAAACAGAAATAGTCAGCAGTA
Alignments
lowQualScore : 1111 333333333 33333333333333333 1111 1111111 111 22222 333333333 111111111111
lowQualScore : 5555 2 2 55 33 2 2 88 7 2 1 33 2 000000000 2 33 33 555 99999999999999999 1111 66 44 0000000 333 33 5 2 2 00000 222222222 1 2 333333333333 44 1 0 5555 33 2 4 2 2 2 444 2 2
lowQualScore : .... . . .. .. . . .. . . . .. . ......... . .. .. ... ................. .... .. .. ....... ... .. . . . ..... ......... . . ............ .. . . .... .. . . . . . ... . .
lowQualScore : 9999 5 5 99 44 5 5 44 5 1 7 77 7 444444444 9 99 99 000 88888888888888888 4444 88 66 9999999 999 99 7 9 9 55555 000000000 9 6 666666666666 66 0 7 3333 11 2 7 2 5 5 444 5 5
consensus : AAAATCTTACGATTA----AGA-TGA-AAA--TT--TTAAA-A-TAC-GGT-AATTCTTTTATAATT--CT-TCGC-TCAT-CTATTTCTG-A--ATGAGCA--AAA---C-----AT-----A----AGTA--C-AT--A-AAT----AGATGA-A-AAA--CTT-GC-A-TTCTTACT-CG--GGGCATAG---------TNGCACTCAG-----------TTGAGT--ATAAGGCAGAGAC----AAAA--TTT-TNATC-TTAGTCG-TA-AGA---T-T-TTTTGTGAAAA
Reference ( family-3270 ) : AAAATCTTACGATTA----AGA-TGA-AAA--TT--TTAAA-A-TAC-GGT-AATTCTTTTATAATT--CT-TCGC-TCAT-CTATTTCTG-A--ATGAGCA--AAA---C-----AT-----A----AGTA--C-AT--A-AAT----AGATGA-A-AAA--CTT-GC-A-TTCTTACT-CG--GGGCATAG---------TNGCACTCAG-----------TTGAGT--ATAAGGCAGAGAC----AAAA--TTT-TNATC-TTAGTCG-TA-AGA---T-T-TTTTGTGAAAA
gi|11 : TA----GGA-TGA-AAT--GTGGTTAAAGA-TAC-AGT-AACTCATTT-TAATTAACT-TCATGTCACGCTATTTTCG-A--ATGAGCAAGAAA---C-----TTG----A----AGAA--A-ATA-A-AAT----AGATGA-ACAAA--CTTGGCAA-TTCTTACT--GAAAGGCATAA--------------------------------GAGT--A-AAGGCTGAAACAGGAAAAG--GTT-TGATCATTAGACG-TA-ACA---T-T-TTTAGTGA
gi|13 : AAACTCTTACGATTA----AGA-TGA-CAA--TT--TTGAA-G-CAC-TGT-AATTAGTTT-TAATT--CTCCCCC-TCA---TATTACTT-A--ATAAGCA--AAA---C------T-----A----AG------AT--A-AAC-------TGA-------------C-A-TTCTTACT-CA--GGGCATCG---------TTTCAC---------------TTGAGT--ATAGGGTAGAAAC----AAA------------------CG-TA-AGA---C-G-TTTTGTGAAAA
gi|14 : gtgacccttttcaca----AAAA--TTT-CCATC-TTAATCG-TA-AGA---TGT-TTTTGTGTAAAtggcca
gi|14 : caAACATCTTACGATTA----AGA-TGG-AAA--TT--TTAAA-A-TAC-GAT-AATACTTTT-TGATT--CT-TCAT-TCAA-CTATTTTTG-A--ATGAGCA--AAA---CTTATTAT-----ATATTAGCA--T-AT--A-GAT----AGGTGA-A-AAA--CTT-GC-ATTTCTCATT--------TATAG---------TAGaaaatacgataatactttttgattcttcattcaactatttttgaatgagcaaaacttattatatattagcatatagataggtgaaaaacttgcatttctcatttatagtagacatagaggttgaacactgcat
gi|15 : catttacacaaaAAAATCTTACGATTATTAAAGA-TGA-AAA--TT--TTAAA-A-TAC-GGTTAACTCTTTTATAATT--CT-TC---------TATTTTTG-A--ATGAGCA--AAA---C-----ATTTTATA----AGTA--T-AT--G-AGT----AAATGG-A-AAA--CTT-GC-A-TTCTTACT-TA--GGGCATAGTATTAAAATTAGCACTCAG-----------TTGAGacatagaggttgaacactgcat
gi|16 : cctattcacaaAAAATCTTACGATTATTAAAGA-TGA-AAA--TT--TTAAA-A-TAC-GGTTAACTCTTTTATAATT--CT-TC---------TATTTTTG-A--ATGAGCA--AAA---C-----ATTTTATA----AGTAT-C-A---G-AGT----AAATGG-A-AAA--CTT-GC-A-TTCTTACT-TA--GGGCATAGTATTAAAATTAGCACTCAG-----------TTTAG
gi|17 : ctattcacaaAAAATCTTACGATTATTAAAGA-TGA-AAAA-TT--TTAAA-A-TAC-GGTTAACTCTTTTATAATT--CT-TC---------TATTTTTG-A--ATGAGCA--AAA---C-----ATTTAT-AT---AGTA--T-ACTGA-GAT----AAATGGGA-AAA--CTT-GC-A-TTCTTACT-TA--GGGCATAGTAATTAAATTAGCACTCAG-----------TTGA
gi|18 : cacaaTA----AGAATGA-AAA--TT--T-AAA-A-CAT-TGT-CATTCTTTTATGAT-----------------TATTTCTG-A--ATAAGCA--AAA---C-----A------A----AGTACTC-AT--A-CATGTACAAGTGATA-AAA--CGT-GC-A-TTC----------------AG---------TA-----CAG-----------------------AGCAGCGAC----AAAA--TTT-GTATC-TTAGTCGTTA-AGATTTT-T-TTTTGTGAAAA
gi|19 : AA--TTTCTGATC-TTAGTCG-T--AGA---T-T-TTTTGTGAAAAtgga
gi|19 : tggcccAAAATCT-ACGACTA----AGA-TCAGAAA--TT--CCAAA-A-CACCAGT-AATTCTTTTATAATT--CT-TCGT-TCAT-CTATTTTTGAA--ATGAGTC--AAA---C-----TT-----A----AGTA--CTAT--A-CAT----GAATGACA-AAA--CTTGGC-A-TTCTTACTGCA--GGGCATGG---------TTGccaaaacaccagtaattcttttataattcttcgttcatctatttttgaaatgagtcaaacttaagtactatacatgaatgacaaaacttggcattcttactgcagggcatggttg
gi|22 : tggcccttttcacaa--GGGCATAG---------CTGCGCTCAG-----------TTGAGT--ATGGAGTATAGAC----GAAA--TGT-TTATC-TTTGT
gi|23 : aaacattgtcagtcttgtatacaaAAA--TTT-TCATC-TTAATCG-TA-AGA---T-T-TTTTGTGAAAAa
gi|23 : ccAAAATCTTACGATTA----AGA-TGA-AAA--TT--TCAAA-A-TAC-AGT-TATTCATTTATAATT--CT-Tcaaaatacagttattcatttataattctt
gi|24 : ccttttcacaaAAAGTCTTGCGATTA----AGA-TTA-AAA--TT--TTAAA-A-CAT-TGT-CAGTCTTGTATA
gi|24 : ----AAAA--TTT-TAATC-TTAATCG-CA-AGA---C-T-TTTTGTGGAAAttgtggaaaggg
gi|25 : tatacaagactgacaatgttttG-----------TTGAGT--ATAAGGCTGACAC----GAAA--TTT-TGATC-TTAGTCA-TA-AGA---T-T-TTTTGTGGAAAggg
gi|26 : AAGGTAGAGAC----AAAAATTTT-CTCTC-TTAGTTA-TATAAA---T-T-TTTTGTGAAAAgggc
gi|27 : ccGAGT--ATAAGGCTGACAC----GAAA--TTT-TGATC-TTAGTCA-TA-AGA---T-T-TTTTGTGAAAggg
gi|3 : ----AAAA--TTT-CCATC-TTAATTA-TA-AAA---G-T-TTCTGTGAAAAg
gi|3 : gcccAAACTTTTATAATTA----AGA-TGG-AAA--TT--TTAAA-A-TAC-TGT-AATTAATGTATGATT--TT-TAAC-TCAT-ATTTATCTG-A--ATGAGCA--AAAGTAC-----AT-----ACC--GGTA--C-AT--G-AGT--------GA-A-AAA--CTA-GC-A-GTTTTACT-TA--GGGTATAG---------TTAAACTCAC-----------TTGAGT--ATAAGGCAGAGAC----AAAA--TTT-TAAT--TTAATTT-TA-AGA---T-T-TGTTGTGaaaatactgtaattaatgtatgatttttaactcatatttatctgaatgagcaaaagtacataccggtacatgagtgaaaaactagcagttttacttagggtatagttaaactcacttgagtataaggcagagacaaaattttaatttaattttaagatttgttgtg
gi|4 : gcccttttcacagAAAACCTTACGGTTA----AGA-T-------------TAAA-A----------ATTCTTTTATAATT--TT-TCAC-TCAT-GTATCTCTG-A--ATTGGCA--AAA---C-----A------A----AGTG--C-AC--A---C----AGCTGA-A-AAAAATTT-GC-A-TTCTTATT-CC--GGGCATAG---------TTGCACGCAG-----------TTGAGT--ATAGAGCAGAGAC----AAAA--ATT-TCATC-ATATTCG-TA-AGA---T-T-TTGTGTAAAAA
gi|5 : accatattcacaaaAAAATCTTACGATTA----AGA-TGA-CTA--TT--TCAAA-A-TAC-AGT-AATTCATTTATAATT--CA-TCAT-TCAT-CTATTTTCA-A--ATGAGCA--AAA---C-----AT-----A----AGTA--T-AT--A-AAT----TGATGA-C-AAG--CTT-GC-A-TTCTTACT-TG--GGGCATAG---------TGGCACCCAG-----------CTGAGC--ATAAGGCTGACAC----AAAA--TTT-TGATC-TTAGTCG-TA-AGA---T-T-TTTTGTGAAAAtgg
gi|6 : AAAATCTTACAAAGA----AGA-TTA-AAA--AT--TTAAA-A-CAC-CAT-CCTTCTTTTATGATT--CT-TCGC-TCGT-ATTTTTCTG-A--ATAAGCA--ATA---T-----A------A----AGTA--C-AC--A-CAC----AGGTGATA-ACA--CTT-GC-A-TTCTTACT-C---AGACATAG---------TTGCACTC----------------AGT--ATAGAGAAGAAAC----AGAT--TTT-T--TT-TTGGT
gi|7 : tggccctttaattttcaccaaaAAATCCTATGATTA----AGA-TAA-AAAAATT--TTAAA-AGCAC-TGT-AAT---------ATT--CT-TTGA-TGGA-CTATTTCTG-ATTAT-------ATA---C-----GA-----A----GGTA--C-AT--GTAAT----A--------AAA--CTT-GC-A--------------GGGCAT-----------TTGCACTTGGCATTTATTTGTTTGAGTTCACAAGCCAGAGAC----AAAA--CT-----TC-TTTTTGA-TA-AGA---T-T-TTCTGTAAAgaaa
gi|9 : gtggccccattcaaatgCTTACGATTA----AGA-TGA-AA---TT--TCAAA-A-TAC-AGT-AATTCATTTACAATT--CT-TCAT-TCCT-CTGTTTTCT-A--ATGAGCA--AAA---C-----TT-----G----AGTA----AT--A-AAT----AGATGA-C-AAG--CTT-GC-A-ATCTTACT-CG--GG-CATAG---------TGGCACCCAG-----------CTGAGC--ATAAGGTTGAAAC----AAAA--TTT-TGATC-TTAGTCG-T--AGA---T-TGTTTTGTAAAAA
7 sequences could not be aligned to this reference sequence:
Unaligned ( gi|1 ): ACTGTAAATCACATTATTTTTTTTGGTTCACAAGAACATTATTTACACATGATTTTGCAAGACTAAGACATTTGCAAAACTCTAGAAATCTCACAAATAAGCAATAAATAATGATTTCTGAAAGTTATGTTTCATGAAATACATCACTTCATTCACAAAATAATTCGGNTAAGCAATAAATAATGATTTCTGAAAGTTATATTTCATGAAATACATCACTTCATTCACAAAAAAATTCATTTTTGCAAAATAAAAGTGATTTAAAGTATTACAATGCAAATC
Unaligned ( gi|2 ): AACAGACTGAGAGTATAAAATACTGTAAATCACTTTTTGCTCATGTGAACTTTATTTATGTAAACGTTGGCGAGACTAACATTCGTAAAAATATTAGTTCTTGCAAATAAACTCTTATGTACAGAAGACTTTATATGCAATAACGATTCATTAAAATTTTGTCTTGTGAATAAATACATCAATGTATCCACGCAAAAATAAAGTCTCACGAAATAAAAGTGACCTACAGTAGTCAG
Unaligned ( gi|8 ): TACAGTAAATCACAAGTTAGTGACGAGAACTTTATTTACGTGTAACTTTGCGGGACTTTTGGAGTTCGAAAGAATTGAGCTCTTGCAAATATAAATTCTTTTACATGGAAGACTCCAGCAATGATTATTCTTAAACGTTGAATAAATACATCTTTTGATCGGCGCAAAGATAAAGTCTCATGATTAAAAGTG
Unaligned ( gi|10 ): ACTGTAAATCGCATTTCTTTTGCAACATTACTTGTAATTTCGCGAGATGAGTCATGAGCCAAAATTTAGTCATTAATCAAGTCATATAAATAGAAGGCGTAGGCAATATATAACGATTGATGAATGTTTTATCTCGTGAATGAATACACTGATGAGGTCCGGCAAAATAGATGTGATTTACAGTAAGTC
Unaligned ( gi|12 ): TGTAAAAGATGACATGCATGTACTGTGAAGCACATTTTATATGTACAAACATTATTTACTTGTAATTTCACAAGACTAGTCATTCGCAAAAATTTTGGTTGGGAAAATAAATTTTTAAATATAGAATACGTAGCAGTAAATTATGTTTTGTAAAAATTTTGGCCTTGTGAATAAATAAATAAAAG
Unaligned ( gi|20 ): TTCAGTGAAATACATATTAAGTATGATGATAATTAAAAGTTGGCATTCTCTCTATGGTCTGATCGTAGTGACAAACTGATACCACTTTGTGGCATTTGACATGGACTAAGATTTTTTGTGAAAAGGGCCA
Unaligned ( gi|21 ): AGTTTGTGTCTTTTGAATAGGTACATCATTGTTATCTTAGTGAAAATAAGATCTCACAAAACAGAAATAGTCAGCAGTA
Alignments
lowQualScore : 1111 333333333 33333333333333333 1111 1111111 111 22222 333333333 111111111111
lowQualScore : 5555 2 2 55 33 2 2 88 7 2 1 33 2 000000000 2 33 33 555 99999999999999999 1111 66 44 0000000 333 33 5 2 2 00000 222222222 1 2 333333333333 44 1 0 5555 33 2 4 2 2 2 444 2 2
lowQualScore : .... . . .. .. . . .. . . . .. . ......... . .. .. ... ................. .... .. .. ....... ... .. . . . ..... ......... . . ............ .. . . .... .. . . . . . ... . .
lowQualScore : 9999 5 5 99 44 5 5 44 5 1 7 77 7 444444444 9 99 99 000 88888888888888888 4444 88 66 9999999 999 99 7 9 9 55555 000000000 9 6 666666666666 66 0 7 3333 11 2 7 2 5 5 444 5 5
consensus : AAAATCTTACGATTA----AGA-TGA-AAA--TT--TTAAA-A-TAC-GGT-AATTCTTTTATAATT--CT-TCGC-TCAT-CTATTTCTG-A--ATGAGCA--AAA---C-----AT-----A----AGTA--C-AT--A-AAT----AGATGA-A-AAA--CTT-GC-A-TTCTTACT-CG--GGGCATAG---------TNGCACTCAG-----------TTGAGT--ATAAGGCAGAGAC----AAAA--TTT-TNATC-TTAGTCG-TA-AGA---T-T-TTTTGTGAAAA
Reference ( family-3270 ) : AAAATCTTACGATTA----AGA-TGA-AAA--TT--TTAAA-A-TAC-GGT-AATTCTTTTATAATT--CT-TCGC-TCAT-CTATTTCTG-A--ATGAGCA--AAA---C-----AT-----A----AGTA--C-AT--A-AAT----AGATGA-A-AAA--CTT-GC-A-TTCTTACT-CG--GGGCATAG---------TNGCACTCAG-----------TTGAGT--ATAAGGCAGAGAC----AAAA--TTT-TNATC-TTAGTCG-TA-AGA---T-T-TTTTGTGAAAA
gi|11 : TA----GGA-TGA-AAT--GTGGTTAAAGA-TAC-AGT-AACTCATTT-TAATTAACT-TCATGTCACGCTATTTTCG-A--ATGAGCAAGAAA---C-----TTG----A----AGAA--A-ATA-A-AAT----AGATGA-ACAAA--CTTGGCAA-TTCTTACT--GAAAGGCATAA--------------------------------GAGT--A-AAGGCTGAAACAGGAAAAG--GTT-TGATCATTAGACG-TA-ACA---T-T-TTTAGTGA
gi|13 : AAACTCTTACGATTA----AGA-TGA-CAA--TT--TTGAA-G-CAC-TGT-AATTAGTTT-TAATT--CTCCCCC-TCA---TATTACTT-A--ATAAGCA--AAA---C------T-----A----AG------AT--A-AAC-------TGA-------------C-A-TTCTTACT-CA--GGGCATCG---------TTTCAC---------------TTGAGT--ATAGGGTAGAAAC----AAA------------------CG-TA-AGA---C-G-TTTTGTGAAAA
gi|14 : gtgacccttttcaca----AAAA--TTT-CCATC-TTAATCG-TA-AGA---TGT-TTTTGTGTAAAtggcca
gi|14 : caAACATCTTACGATTA----AGA-TGG-AAA--TT--TTAAA-A-TAC-GAT-AATACTTTT-TGATT--CT-TCAT-TCAA-CTATTTTTG-A--ATGAGCA--AAA---CTTATTAT-----ATATTAGCA--T-AT--A-GAT----AGGTGA-A-AAA--CTT-GC-ATTTCTCATT--------TATAG---------TAGaaaatacgataatactttttgattcttcattcaactatttttgaatgagcaaaacttattatatattagcatatagataggtgaaaaacttgcatttctcatttatagtagacatagaggttgaacactgcat
gi|15 : catttacacaaaAAAATCTTACGATTATTAAAGA-TGA-AAA--TT--TTAAA-A-TAC-GGTTAACTCTTTTATAATT--CT-TC---------TATTTTTG-A--ATGAGCA--AAA---C-----ATTTTATA----AGTA--T-AT--G-AGT----AAATGG-A-AAA--CTT-GC-A-TTCTTACT-TA--GGGCATAGTATTAAAATTAGCACTCAG-----------TTGAGacatagaggttgaacactgcat
gi|16 : cctattcacaaAAAATCTTACGATTATTAAAGA-TGA-AAA--TT--TTAAA-A-TAC-GGTTAACTCTTTTATAATT--CT-TC---------TATTTTTG-A--ATGAGCA--AAA---C-----ATTTTATA----AGTAT-C-A---G-AGT----AAATGG-A-AAA--CTT-GC-A-TTCTTACT-TA--GGGCATAGTATTAAAATTAGCACTCAG-----------TTTAG
gi|17 : ctattcacaaAAAATCTTACGATTATTAAAGA-TGA-AAAA-TT--TTAAA-A-TAC-GGTTAACTCTTTTATAATT--CT-TC---------TATTTTTG-A--ATGAGCA--AAA---C-----ATTTAT-AT---AGTA--T-ACTGA-GAT----AAATGGGA-AAA--CTT-GC-A-TTCTTACT-TA--GGGCATAGTAATTAAATTAGCACTCAG-----------TTGA
gi|18 : cacaaTA----AGAATGA-AAA--TT--T-AAA-A-CAT-TGT-CATTCTTTTATGAT-----------------TATTTCTG-A--ATAAGCA--AAA---C-----A------A----AGTACTC-AT--A-CATGTACAAGTGATA-AAA--CGT-GC-A-TTC----------------AG---------TA-----CAG-----------------------AGCAGCGAC----AAAA--TTT-GTATC-TTAGTCGTTA-AGATTTT-T-TTTTGTGAAAA
gi|19 : AA--TTTCTGATC-TTAGTCG-T--AGA---T-T-TTTTGTGAAAAtgga
gi|19 : tggcccAAAATCT-ACGACTA----AGA-TCAGAAA--TT--CCAAA-A-CACCAGT-AATTCTTTTATAATT--CT-TCGT-TCAT-CTATTTTTGAA--ATGAGTC--AAA---C-----TT-----A----AGTA--CTAT--A-CAT----GAATGACA-AAA--CTTGGC-A-TTCTTACTGCA--GGGCATGG---------TTGccaaaacaccagtaattcttttataattcttcgttcatctatttttgaaatgagtcaaacttaagtactatacatgaatgacaaaacttggcattcttactgcagggcatggttg
gi|22 : tggcccttttcacaa--GGGCATAG---------CTGCGCTCAG-----------TTGAGT--ATGGAGTATAGAC----GAAA--TGT-TTATC-TTTGT
gi|23 : aaacattgtcagtcttgtatacaaAAA--TTT-TCATC-TTAATCG-TA-AGA---T-T-TTTTGTGAAAAa
gi|23 : ccAAAATCTTACGATTA----AGA-TGA-AAA--TT--TCAAA-A-TAC-AGT-TATTCATTTATAATT--CT-Tcaaaatacagttattcatttataattctt
gi|24 : ccttttcacaaAAAGTCTTGCGATTA----AGA-TTA-AAA--TT--TTAAA-A-CAT-TGT-CAGTCTTGTATA
gi|24 : ----AAAA--TTT-TAATC-TTAATCG-CA-AGA---C-T-TTTTGTGGAAAttgtggaaaggg
gi|25 : tatacaagactgacaatgttttG-----------TTGAGT--ATAAGGCTGACAC----GAAA--TTT-TGATC-TTAGTCA-TA-AGA---T-T-TTTTGTGGAAAggg
gi|26 : AAGGTAGAGAC----AAAAATTTT-CTCTC-TTAGTTA-TATAAA---T-T-TTTTGTGAAAAgggc
gi|27 : ccGAGT--ATAAGGCTGACAC----GAAA--TTT-TGATC-TTAGTCA-TA-AGA---T-T-TTTTGTGAAAggg
gi|3 : ----AAAA--TTT-CCATC-TTAATTA-TA-AAA---G-T-TTCTGTGAAAAg
gi|3 : gcccAAACTTTTATAATTA----AGA-TGG-AAA--TT--TTAAA-A-TAC-TGT-AATTAATGTATGATT--TT-TAAC-TCAT-ATTTATCTG-A--ATGAGCA--AAAGTAC-----AT-----ACC--GGTA--C-AT--G-AGT--------GA-A-AAA--CTA-GC-A-GTTTTACT-TA--GGGTATAG---------TTAAACTCAC-----------TTGAGT--ATAAGGCAGAGAC----AAAA--TTT-TAAT--TTAATTT-TA-AGA---T-T-TGTTGTGaaaatactgtaattaatgtatgatttttaactcatatttatctgaatgagcaaaagtacataccggtacatgagtgaaaaactagcagttttacttagggtatagttaaactcacttgagtataaggcagagacaaaattttaatttaattttaagatttgttgtg
gi|4 : gcccttttcacagAAAACCTTACGGTTA----AGA-T-------------TAAA-A----------ATTCTTTTATAATT--TT-TCAC-TCAT-GTATCTCTG-A--ATTGGCA--AAA---C-----A------A----AGTG--C-AC--A---C----AGCTGA-A-AAAAATTT-GC-A-TTCTTATT-CC--GGGCATAG---------TTGCACGCAG-----------TTGAGT--ATAGAGCAGAGAC----AAAA--ATT-TCATC-ATATTCG-TA-AGA---T-T-TTGTGTAAAAA
gi|5 : accatattcacaaaAAAATCTTACGATTA----AGA-TGA-CTA--TT--TCAAA-A-TAC-AGT-AATTCATTTATAATT--CA-TCAT-TCAT-CTATTTTCA-A--ATGAGCA--AAA---C-----AT-----A----AGTA--T-AT--A-AAT----TGATGA-C-AAG--CTT-GC-A-TTCTTACT-TG--GGGCATAG---------TGGCACCCAG-----------CTGAGC--ATAAGGCTGACAC----AAAA--TTT-TGATC-TTAGTCG-TA-AGA---T-T-TTTTGTGAAAAtgg
gi|6 : AAAATCTTACAAAGA----AGA-TTA-AAA--AT--TTAAA-A-CAC-CAT-CCTTCTTTTATGATT--CT-TCGC-TCGT-ATTTTTCTG-A--ATAAGCA--ATA---T-----A------A----AGTA--C-AC--A-CAC----AGGTGATA-ACA--CTT-GC-A-TTCTTACT-C---AGACATAG---------TTGCACTC----------------AGT--ATAGAGAAGAAAC----AGAT--TTT-T--TT-TTGGT
gi|7 : tggccctttaattttcaccaaaAAATCCTATGATTA----AGA-TAA-AAAAATT--TTAAA-AGCAC-TGT-AAT---------ATT--CT-TTGA-TGGA-CTATTTCTG-ATTAT-------ATA---C-----GA-----A----GGTA--C-AT--GTAAT----A--------AAA--CTT-GC-A--------------GGGCAT-----------TTGCACTTGGCATTTATTTGTTTGAGTTCACAAGCCAGAGAC----AAAA--CT-----TC-TTTTTGA-TA-AGA---T-T-TTCTGTAAAgaaa
gi|9 : gtggccccattcaaatgCTTACGATTA----AGA-TGA-AA---TT--TCAAA-A-TAC-AGT-AATTCATTTACAATT--CT-TCAT-TCCT-CTGTTTTCT-A--ATGAGCA--AAA---C-----TT-----G----AGTA----AT--A-AAT----AGATGA-C-AAG--CTT-GC-A-ATCTTACT-CG--GG-CATAG---------TGGCACCCAG-----------CTGAGC--ATAAGGTTGAAAC----AAAA--TTT-TGATC-TTAGTCG-T--AGA---T-TGTTTTGTAAAAA
blockSeqs : TTAA A G AA . . G CA T G A . C ATTCAAC A TT . GTA TTATTATATATT CTC TG TA GTACAAG GA AA G . T GCA TATTAAAAT T T CATTTATTTGTT TC A . AT C C . T T TTT G G
blockSeqs : TTAA . . A . . . T T T A . . GTTCATC . . . . ATTTTATA TC . A AGG TA . . . . CA TATTAAAAT A T T . A . . . T . . . . . .
blockSeqs : TTAA . . . . . . G T T A . . ACTCATA . . . . ATTTTATA CT . G AAA CA . . . . TA TAATTAAAT A T T . A . . . G . . . . . .
blockSeqs : . . . . . . . G . T A . . ACTCATG . . . . ATTTATAT T . A AAA TA . . . . TA . A T T . T . . . T . . . . . .
blockSeqs : . . . . . . . G . T A . . ATTCATC . . . . ATACC T . A AAA A . . . . TA . A T T . A . . . C . . . . . .
blockSeqs : . . . . . . . G . T A . . GCTCGTA . . . . TTA T . G GAA A . . . . TA . A G T . T . . . A . . . . . .
blockSeqs : . . . . . . . T . T A . . GATGGAC . . . . ATA C . C AGC A . . . . CC . T C T . A . . . G . . . . . .
blockSeqs : . . . . . . . A . A A . . ATTCCTC . . . . GAA C . C TGA A . . . . TG . T T T . A . . . T . . . . . .
blockSeqs : . . . . . . . T . T A . . CCTCA . . . . TTG T . A AGG A . . . . CG . T T T . T . . . G . . . . . .
blockSeqs : . . . . . . . T . A A . . . . . . . TA C . A AGA C . . . . C . T C C . A . . . C . . . . . .
blockSeqs : . . . . . . . A . T A . . . . . . . AA C . C A C . . . . . . G . C . A . . . A . . . . . .
blockSeqs : . . . . . . . C . A A . . . . . . . AA . . A . . . . . . . . T . . T . . . C . . . . . .
blockSeqs : . . . . . . . T . T . . . . . . . . AA . . . . . . . . . . . T . . . . G . . . . . .
blockSeqs : . . . . . . . A . A . . . . G . . . G . . . . . .
blockSeqs : . . . . . . . . . . . . . . . . . . . . .
blockSeqs : . . . .
blockSeqs : . . . .
blockSeqCons : ** ** ACTCGTC** ** ATA************** ** A** TA*** T*********** ****
originalCons : AAAATCTTACGATTA----AGA-TGA-AAA--TT--TTAAA-A-TAC-GGT-AATTCTTTTATAATT--CT-TCGC-TCAT-CTATTTCTG-A--ATGAGCA--AAA---C-----AT-----A----AGTA--C-AT--A-AAT----AGATGA-A-AAA--CTT-GC-A-TTCTTACT-CG--GGGCATAG---------TNGCACTCAG-----------TTGAGT--ATAAGGCAGAGAC----AAAA--TTT-TNATC-TTAGTCG-TA-AGA---T-T-TTTTGTGAAAA
finalCons : AAAATCTTACGATTA----AGA-TGA-AAA--TT--TTAAA-A-TAC-GGT-AATTCTTTTATAATT--CT-TCACTCGTC--TATTTCTG-A--ATGAGCA--AAA---CATA--------------AGTA--C-AT--A-AAT----AGATGAA--AAA--CTT-GC-A-TTCTTACTTA---GGGCATAG---------TNGCACTCAGT-----------TGAGT--ATAAGGCAGAGAC----AAAA--TTT-TNATC-TTAGTCG-TA-AGA---T-T-TTTTGTGAAAA
7 sequences could not be aligned to this reference sequence:
Unaligned ( gi|1 ): ACTGTAAATCACATTATTTTTTTTGGTTCACAAGAACATTATTTACACATGATTTTGCAAGACTAAGACATTTGCAAAACTCTAGAAATCTCACAAATAAGCAATAAATAATGATTTCTGAAAGTTATGTTTCATGAAATACATCACTTCATTCACAAAATAATTCGGNTAAGCAATAAATAATGATTTCTGAAAGTTATATTTCATGAAATACATCACTTCATTCACAAAAAAATTCATTTTTGCAAAATAAAAGTGATTTAAAGTATTACAATGCAAATC
Unaligned ( gi|2 ): AACAGACTGAGAGTATAAAATACTGTAAATCACTTTTTGCTCATGTGAACTTTATTTATGTAAACGTTGGCGAGACTAACATTCGTAAAAATATTAGTTCTTGCAAATAAACTCTTATGTACAGAAGACTTTATATGCAATAACGATTCATTAAAATTTTGTCTTGTGAATAAATACATCAATGTATCCACGCAAAAATAAAGTCTCACGAAATAAAAGTGACCTACAGTAGTCAG
Unaligned ( gi|8 ): TACAGTAAATCACAAGTTAGTGACGAGAACTTTATTTACGTGTAACTTTGCGGGACTTTTGGAGTTCGAAAGAATTGAGCTCTTGCAAATATAAATTCTTTTACATGGAAGACTCCAGCAATGATTATTCTTAAACGTTGAATAAATACATCTTTTGATCGGCGCAAAGATAAAGTCTCATGATTAAAAGTG
Unaligned ( gi|10 ): ACTGTAAATCGCATTTCTTTTGCAACATTACTTGTAATTTCGCGAGATGAGTCATGAGCCAAAATTTAGTCATTAATCAAGTCATATAAATAGAAGGCGTAGGCAATATATAACGATTGATGAATGTTTTATCTCGTGAATGAATACACTGATGAGGTCCGGCAAAATAGATGTGATTTACAGTAAGTC
Unaligned ( gi|12 ): TGTAAAAGATGACATGCATGTACTGTGAAGCACATTTTATATGTACAAACATTATTTACTTGTAATTTCACAAGACTAGTCATTCGCAAAAATTTTGGTTGGGAAAATAAATTTTTAAATATAGAATACGTAGCAGTAAATTATGTTTTGTAAAAATTTTGGCCTTGTGAATAAATAAATAAAAG
Unaligned ( gi|20 ): TTCAGTGAAATACATATTAAGTATGATGATAATTAAAAGTTGGCATTCTCTCTATGGTCTGATCGTAGTGACAAACTGATACCACTTTGTGGCATTTGACATGGACTAAGATTTTTTGTGAAAAGGGCCA
Unaligned ( gi|21 ): AGTTTGTGTCTTTTGAATAGGTACATCATTGTTATCTTAGTGAAAATAAGATCTCACAAAACAGAAATAGTCAGCAGTA
Alignments
lowQualScore : 1111 33333333333 33333333333333333 1111 1111111 111 11111111 333333333 111111111111
lowQualScore : 5555 2 2 55 33 2 2 88 7 2 1 33 66666666666 2 33 33 555 99999999999999999 1111 66 44 0000000 333 33 2 5 2 2 2 66666666 222222222 2 2 333333333333 44 1 0 5555 33 2 4 2 2 2 444 2 2
lowQualScore : .... . . .. .. . . .. . . . .. ........... . .. .. ... ................. .... .. .. ....... ... .. . . . . . ........ ......... . . ............ .. . . .... .. . . . . . ... . .
lowQualScore : 9999 5 5 99 44 5 5 44 5 1 7 77 88888888888 9 99 99 000 88888888888888888 4444 88 66 9999999 777 77 7 3 7 7 7 55555555 000000000 0 6 666666666666 66 0 7 3333 11 2 7 2 5 5 444 5 5
consensus : AAAATCTTACGATTA----AGA-TGA-AAA--TT--TTAAA-A-TAC-GGT-AATTCTTTTATAATT--CTTCG---CTCGTC-TATTTCTG-A--ATGAGCA--AAA---C-----AT-----A----AGTA--C-AT--A-AAT----AGATGA-A-AAA--C-TT-G-C-A-TTCTTACT-C-A----GGGCATAG---------TNGCACTCAG-----------TTGAGT--ATAAGGCAGAGAC----AAAA--TTT-TNATC-TTAGTCG-TA-AGA---T-T-TTTTGTGAAAA
Reference ( family-3270 ) : AAAATCTTACGATTA----AGA-TGA-AAA--TT--TTAAA-A-TAC-GGT-AATTCTTTTATAATT--CTTCA---CTCGTC-TATTTCTG-A--ATGAGCA--AAA---C-----AT-----A----AGTA--C-AT--A-AAT----AGATGA-A-AAA--C-TT-G-C-A-TTCTTACT-T-A----GGGCATAG---------TNGCACTCAG-----------TTGAGT--ATAAGGCAGAGAC----AAAA--TTT-TNATC-TTAGTCG-TA-AGA---T-T-TTTTGTGAAAA
gi|11 : TA----GGA-TGA-AAT--GTGGTTAAAGA-TAC-AGT-AACTCATTT-TAATTAACTTCATGTCACG-C-TATTTTCG-A--ATGAGCAAGAAA---C-----TTG----A----AGAA--A-ATA-A-AAT----AGATGA-ACAAA--C-TTGG-CAA-TTCTTACT-GAA----AGGCATAA--------------------------------GAGT--A-AAGGCTGAAACAGGAAAAG--GTT-TGATCATTAGACG-TA-ACA---T-T-TTTAGTGA
gi|13 : AAACTCTTACGATTA----AGA-TGA-CAA--TT--TTGAA-G-CAC-TGT-AATTAGTTT-TAATT--CTCC----CCC-TCATATTACTT-A--ATAAGCA--AAA---C------T-----A----AG------AT--A-AAC-------TGA---------------C-A-TTCTTACT-C-A----GGGCATCG---------TTTCAC---------------TTGAGT--ATAGGGTAGAAAC----AAA------------------CG-TA-AGA---C-G-TTTTGTGAAAA
gi|14 : gtgacccttttcaca----AAAA--TTT-CCATC-TTAATCG-TA-AGA---TGT-TTTTGTGTAAAtggcca
gi|14 : caAACATCTTACGATTA----AGA-TGG-AAA--TT--TTAAA-A-TAC-GAT-AATACTTTT-TGATT--CTTCA---TTCAAC-TATTTTTG-A--ATGAGCA--AAA---CTTATTAT-----ATATTAGCA--T-AT--A-GAT----AGGTGA-A-AAA--C-TT-G-C-ATTTCTCATT-T-ATAGTAGACATAG---------aaaatacgataatactttttgattcttcattcaactatttttgaatgagcaaaacttattatatattagcatatagataggtgaaaaacttgcatttctcatttatagtagacatagaggttgaacactgcat
gi|15 : catttacacaaaAAAATCTTACGATTATTAAAGA-TGA-AAA--TT--TTAAA-A-TAC-GGTTAACTCTTTTATAATT--CTTC-----------TATTTTTG-A--ATGAGCA--AAA---C-----ATTTTATA----AGTA--T-AT--G-AGT----AAATGG-A-AAA--C-TT-G-C-A-TTCTTACT-T-A----GGGCATAGTATTAAAATTAGCACTCAG-----------TTGAGaggttgaacactgcat
gi|16 : cctattcacaaAAAATCTTACGATTATTAAAGA-TGA-AAA--TT--TTAAA-A-TAC-GGTTAACTCTTTTATAATT--CTTC-----------TATTTTTG-A--ATGAGCA--AAA---C-----ATTTTATA----AGTAT-C-A---G-AGT----AAATGG-A-AAA--C-TT-G-C-A-TTCTTACT-T-A----GGGCATAGTATTAAAATTAGCACTCAG-----------TTTAG
gi|17 : ctattcacaaAAAATCTTACGATTATTAAAGA-TGA-AAAA-TT--TTAAA-A-TAC-GGTTAACTCTTTTATAATT--CTTC-----------TATTTTTG-A--ATGAGCA--AAA---C-----ATTTAT-AT---AGTA--T-ACTGA-GAT----AAATGGGA-AAA--C-TT-G-C-A-TTCTTACT-T-A----GGGCATAGTAATTAAATTAGCACTCAG-----------TTGA
gi|18 : cacaaTA----AGAATGA-AAA--TT--T-AAA-A-CAT-TGT-CATTCTTTTATGAT------------------TATTTCTG-A--ATAAGCA--AAA---C-----A------A----AGTACTC-AT--A-CATGTACAAGTGATA-AAA--C-GT-G-C-A-TTC-------------------AG---------TA-----CAG-----------------------AGCAGCGAC----AAAA--TTT-GTATC-TTAGTCGTTA-AGATTTT-T-TTTTGTGAAAA
gi|19 : AA--TTTCTGATC-TTAGTCG-T--AGA---T-T-TTTTGTGAAAAtgga
gi|19 : tggcccAAAATCT-ACGACTA----AGA-TCAGAAA--TT--CCAAA-A-CACCAGT-AATTCTTTTATAATT--CTTCG---TTCATC-TATTTTTGAA--ATGAGTC--AAA---C-----TT-----A----AGTA--CTAT--A-CAT----GAATGACA-AAA--C-TTGG-C-A-TTCTTACTGC-A----GGGCATGG---------TTGccaaaacaccagtaattcttttataattcttcgttcatctatttttgaaatgagtcaaacttaagtactatacatgaatgacaaaacttggcattcttactgcagggcatggttg
gi|22 : tggcccttttcacaa-AAA--CATT-GTC-A-GTCTTGTA-T-ACAA-GGGCATAG---------CTGCGCTCAG-----------TTGAGT--ATGGAGTATAGAC----GAAA--TGT-TTATC-TTTGT
gi|23 : AAA--TTT-TCATC-TTAATCG-TA-AGA---T-T-TTTTGTGAAAAa
gi|23 : ccAAAATCTTACGATTA----AGA-TGA-AAA--TT--TCAAA-A-TAC-AGT-TATTCATTTATAATT--CTTcaaaatacagttattcatttataattctt
gi|24 : ccttttcacaaAAAGTCTTGCGATTA----AGA-TTA-AAA--TT--TTAAA-A-CAT-TGT-CAGTCTTGTATA
gi|24 : ----AAAA--TTT-TAATC-TTAATCG-CA-AGA---C-T-TTTTGTGGAAAttgtggaaaggg
gi|25 : tatacaagactgacaatgttttG-----------TTGAGT--ATAAGGCTGACAC----GAAA--TTT-TGATC-TTAGTCA-TA-AGA---T-T-TTTTGTGGAAAggg
gi|26 : AAGGTAGAGAC----AAAAATTTT-CTCTC-TTAGTTA-TATAAA---T-T-TTTTGTGAAAAgggc
gi|27 : ccGAGT--ATAAGGCTGACAC----GAAA--TTT-TGATC-TTAGTCA-TA-AGA---T-T-TTTTGTGAAAggg
gi|3 : ----AAAA--TTT-CCATC-TTAATTA-TA-AAA---G-T-TTCTGTGAAAAg
gi|3 : gcccAAACTTTTATAATTA----AGA-TGG-AAA--TT--TTAAA-A-TAC-TGT-AATTAATGTATGATT--TTTAA---CTCATA-TTTATCTG-A--ATGAGCA--AAAGTAC-----AT-----ACC--GGTA--C-AT--G-AGT--------GA-A-AAA--C-TA-G-C-A-GTTTTACT-T-A----GGGTATAG---------TTAAACTCAC-----------TTGAGT--ATAAGGCAGAGAC----AAAA--TTT-TAAT--TTAATTT-TA-AGA---T-T-TGTTGTGaaaatactgtaattaatgtatgatttttaactcatatttatctgaatgagcaaaagtacataccggtacatgagtgaaaaactagcagttttacttagggtatagttaaactcacttgagtataaggcagagacaaaattttaatttaattttaagatttgttgtg
gi|4 : gcccttttcacagAAAACCTTACGGTTA----AGA-T-------------TAAA-A----------ATTCTTTTATAATT--TTTCA---CTCATG-TATCTCTG-A--ATTGGCA--AAA---C-----A------A----AGTG--C-AC--A---C----AGCTGA-A-AAAAAT-TT-G-C-A-TTCTTATT-C-C----GGGCATAG---------TTGCACGCAG-----------TTGAGT--ATAGAGCAGAGAC----AAAA--ATT-TCATC-ATATTCG-TA-AGA---T-T-TTGTGTAAAAA
gi|5 : accatattcacaaaAAAATCTTACGATTA----AGA-TGA-CTA--TT--TCAAA-A-TAC-AGT-AATTCATTTATAATT--CATCA---TTCATC-TATTTTCA-A--ATGAGCA--AAA---C-----AT-----A----AGTA--T-AT--A-AAT----TGATGA-C-AAG--C-TT-G-C-A-TTCTTACT-T-G----GGGCATAG---------TGGCACCCAG-----------CTGAGC--ATAAGGCTGACAC----AAAA--TTT-TGATC-TTAGTCG-TA-AGA---T-T-TTTTGTGAAAAtgg
gi|6 : AAAATCTTACAAAGA----AGA-TTA-AAA--AT--TTAAA-A-CAC-CAT-CCTTCTTTTATGATT--CTTCG---CTCGTA-TTTTTCTG-A--ATAAGCA--ATA---T-----A------A----AGTA--C-AC--A-CAC----AGGTGATA-ACA--C-TT-G-C-A-TTCTTACT-C-A-----GACATAG---------TTGCACTC----------------AGT--ATAGAGAAGAAAC----AGAT--TTT-T--TT-TTGGT
gi|7 : tggccctttaattttcaccaaaAAATCCTATGATTA----AGA-TAA-AAAAATT--TTAAA-AGCAC-TGT-AAT---------ATT--CTTTG---ATGGAC-TATTTCTG-ATTAT-------ATA---C-----GA-----A----GGTA--C-AT--GTAAT----A--------AAA--C-TT-G-C-A-----------------GGGCAT-----------TTGCACTTGGCATTTATTTGTTTGAGTTCACAAGCCAGAGAC----AAAA--CT-----TC-TTTTTGA-TA-AGA---T-T-TTCTGTAAAgaaa
gi|9 : gtggccccattcaaatgCTTACGATTA----AGA-TGA-AA---TT--TCAAA-A-TAC-AGT-AATTCATTTACAATT--CTTCA---TTCCTC-TGTTTTCT-A--ATGAGCA--AAA---C-----TT-----G----AGTA----AT--A-AAT----AGATGA-C-AAG--C-TT-G-C-A-ATCTTACT-C------GGGCATAG---------TGGCACCCAG-----------CTGAGC--ATAAGGTTGAAAC----AAAA--TTT-TGATC-TTAGTCG-T--AGA---T-TGTTTTGTAAAAA
7 sequences could not be aligned to this reference sequence:
Unaligned ( gi|1 ): ACTGTAAATCACATTATTTTTTTTGGTTCACAAGAACATTATTTACACATGATTTTGCAAGACTAAGACATTTGCAAAACTCTAGAAATCTCACAAATAAGCAATAAATAATGATTTCTGAAAGTTATGTTTCATGAAATACATCACTTCATTCACAAAATAATTCGGNTAAGCAATAAATAATGATTTCTGAAAGTTATATTTCATGAAATACATCACTTCATTCACAAAAAAATTCATTTTTGCAAAATAAAAGTGATTTAAAGTATTACAATGCAAATC
Unaligned ( gi|2 ): AACAGACTGAGAGTATAAAATACTGTAAATCACTTTTTGCTCATGTGAACTTTATTTATGTAAACGTTGGCGAGACTAACATTCGTAAAAATATTAGTTCTTGCAAATAAACTCTTATGTACAGAAGACTTTATATGCAATAACGATTCATTAAAATTTTGTCTTGTGAATAAATACATCAATGTATCCACGCAAAAATAAAGTCTCACGAAATAAAAGTGACCTACAGTAGTCAG
Unaligned ( gi|8 ): TACAGTAAATCACAAGTTAGTGACGAGAACTTTATTTACGTGTAACTTTGCGGGACTTTTGGAGTTCGAAAGAATTGAGCTCTTGCAAATATAAATTCTTTTACATGGAAGACTCCAGCAATGATTATTCTTAAACGTTGAATAAATACATCTTTTGATCGGCGCAAAGATAAAGTCTCATGATTAAAAGTG
Unaligned ( gi|10 ): ACTGTAAATCGCATTTCTTTTGCAACATTACTTGTAATTTCGCGAGATGAGTCATGAGCCAAAATTTAGTCATTAATCAAGTCATATAAATAGAAGGCGTAGGCAATATATAACGATTGATGAATGTTTTATCTCGTGAATGAATACACTGATGAGGTCCGGCAAAATAGATGTGATTTACAGTAAGTC
Unaligned ( gi|12 ): TGTAAAAGATGACATGCATGTACTGTGAAGCACATTTTATATGTACAAACATTATTTACTTGTAATTTCACAAGACTAGTCATTCGCAAAAATTTTGGTTGGGAAAATAAATTTTTAAATATAGAATACGTAGCAGTAAATTATGTTTTGTAAAAATTTTGGCCTTGTGAATAAATAAATAAAAG
Unaligned ( gi|20 ): TTCAGTGAAATACATATTAAGTATGATGATAATTAAAAGTTGGCATTCTCTCTATGGTCTGATCGTAGTGACAAACTGATACCACTTTGTGGCATTTGACATGGACTAAGATTTTTTGTGAAAAGGGCCA
Unaligned ( gi|21 ): AGTTTGTGTCTTTTGAATAGGTACATCATTGTTATCTTAGTGAAAATAAGATCTCACAAAACAGAAATAGTCAGCAGTA