lowQualScore : 22222222222222222222222222222222222 111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 1 777777777777777 11 3333333333333 44444444 44444444444444444444444444 11111 1 1111 11111 1111111 88888888888888888888888888888888888888888888888888888888888888888888888888888888 1111 3333 111111 111 444444444444444 111 111111 22222222222222222222222222222222222 3333 1 222 3 44444 1111 444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444 33 11 2222222 11 2 11
lowQualScore : 5 888888888888888 777 4 777 66 22 777 4 55 8 0000000000000 4 2 88 5 1 11111111 5 1 8 66 66666666666666666666666666 1 888 888 4 3 55555 3 7777 5 1111 4 66666 66 6666666 1 33333333333333333333333333333333333333333333333333333333333333333333333333333333 4444 3 1111 666666 000 222222222222222 3 0 2 111 333333 3 3 66 3 66666666666666666666666666666666666 1111 5 66 555 2 77 66 2 2 99 2 0 333 33333 88888 333 2 4 0000 33 777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777 2 3 888888888 333 2 4 55 2 2 2 33 55 2 5 66 2 5 33 44 2 6666666 0 9999999 22 3 3 3 3 1 1 7 6 44
lowQualScore : . ............... ... . ... .. .. ... . .. . ............. . . .. . . ........ . . . .. .......................... . ... ... . . ..... . .... . .... . ..... .. ....... . ................................................................................ .... . .... ...... ... ............... . . . ... ...... . . .. . ................................... .... . .. ... . .. .. . . .. . . ... ..... ..... ... . . .... .. ...................................................................................................... . . ......... ... . . .. . . . .. .. . . .. . . .. .. . ....... . ....... .. . . . . . . . . ..
lowQualScore : 4 333333333333333 888 4 888 11 22 888 3 55 0 4444444444444 4 7 22 6 4 44444444 0 9 2 99 88888888888888888888888888 5 888 888 0 6 11111 6 7777 0 3333 4 44444 99 2222222 4 44444444444444444444444444444444444444444444444444444444444444444444444444444444 2222 5 8888 444444 000 888888888888888 6 1 0 888 000000 6 6 99 9 77777777777777777777777777777777777 8888 0 55 000 2 55 11 2 2 77 2 0 999 44444 22222 222 1 2 7777 11 111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111 1 8 444444444 777 1 4 00 1 0 0 88 00 4 6 88 5 0 44 44 5 2222222 2 4444444 11 1 1 3 3 6 7 3 7 00
consensus : ACTACCTGTGGCGAAGA-AAAA---TC--TGTTTC---C-ACTG---G--GTAA--AT---AACAATTTGACCCT--TTGT-GAAAGGGC-ATATT------TTC-TTCCTCTAGCCCGGCGA-----CTTGCAT-CAAACTTCTC--TC--A--GA--GN-TT---GNT-NA-A-AGA---CA---AAGCCACC-CCG-ATCAGGN----G-CGGA----TCCAGGATTTGAGGTTAC-AGG-GGG-CACAACTT--CA-------TGAGGCNCGCGGGG--GAGGGGNTGG--G-TCCC---AGATTTTACAA-GAG-TA--GA-----A---TGT---------------CTC----CCATGTAG-TC-ATTT------TTAA---TATTT-TCT--------GTCATTTTTTTATGAGGT--GAAATTGATAAAA-----TGAC-A-CAAAA--TTTAAGAGTTTTTTTTGGA---CTGGGGGAA-----------GGGATAAATA-AA-TATAAATTCTCC--AA--TA-AAA--GCA--A-CAATA-AN-T-CA-ATTGTCGTT---TAT--TT--C--AAA-A-AGA-GT-CN---AA--ACT--A-ATGAT-TAAATT-TGAA-------------AT-TT----TTA--G-GG------GGG---GGGGGG-------GGN---GC--------A------AA-TCCGC---------C---A-CT-GCC--GAT-CATT-CAA-AGTAG-CGC-CGG-TTTGATG-TTCC-A-TC--AG-AT-AC----A--GACAT---GT-NCTTTCAA-GTGAG-ACGT-A-G-AT-AATTTCCA-AG-ACG-TAGC
Reference ( gi|3 ) : ACTGACTGTGGCGAATT-AATA---TT--TGTTTC---C-ACTG---G--GTAA--AT---AATAATTTGACCCT--TTGT-GAAAGGGC-ATGCT------TTC-TTTTTCTAGCCCGGCGA-----ATAGCAT-CAAACCTCTC--TC--A--GA--GA--T---GAT-AA-A-AAA---CA---AAGCCACC-CCG-ATCAGGC----G-CGGA----TCCAGGATTGGAGGTTAC-ACG-GGA-TAAAACTT--CA-------TGAGGCCCGCGGGG--GAGGGGGTGGCAGCTCTC---AGATTTTATAA-GAG-TA--GA-----A---TGT---------------CTC----CTATGTAG-T--ATTT------TTAA---TATAT-ACT--------GTCATTTTTTTATGAGGC--GAAATTAATAAAA-----CGAC-A-CAAAA--TTTAAGAGTTTTGTTTGGATTGTTGGGGGGGGGGGGGTTGGGGGGGTAAATA-AC-TATACATTCTCC--A---TA-AAA--GCA--A-CAATA-AA-T-CATATTGTCGTT---T----CT--C--AAA-A-AGA-GT-CG---AA--ACT--A-TTGAT-TAAATT-TGAA-------------AT-TT----TTA--G-GG------GGG---GGGGGG-------GGG---GC--------A------AA-TCCGC---------C---A-CT-GCC--GAT-CATT-CAA-AGTA--CGC-CGG-TTCGATG-GTCC-A-TC--AG-AT-AC----A--GACAT---AT-ACTTTCAA-CTGAG-ACGT-A-G-ATAAATTTCCA-AG-ACG-CAGC
gi|1 : ACTGCTTTTGGTGAAGGGAAAA---TA--TGATTC---C-ATTG---G--GTAA--AT---AACAACTTGACCCT--TTGT-GAATGGGT-ATATT------TTC-CCTCT----CCCTGTGG-----CTTGCAT-CAAACTTCTT--TCTGA--GA--GT--T---GTC----A-AGA---CG---AGGCTGCC-CCG-ATCAGTG----G-CGGA----TCCAGGATTTGAGGTTA--GCG-----CACAACTT--CAGGAGATCTGAGTCCCTCAG------AGGGCTAG--GCTCCT---TGATTTTAC-A-GAT-TT--TATTTATA---TGT---------------CTC----TCACTTAA-TA-ATTT------TTTA---TATTC-TCT--------GTCA--TTTTGATGAGAT--G-GACTGATAAAAATTGGCAACAA-AAAAA--ATTA--AGTTTT----------CTGGGGGAA----------------AAATA----TATCAATTTTCCTAA---TA-AAG--GTA--A-CAAGA-AA-T-CA-AATGTGGTT---T----ATTAC--AGA-G-AAA-GT-TG---AA--AAT--A----AT-T-AGTT-TGAA-------------A---A----TAA--T-GG------GTG---AGGGTG-------TGC---ACCCTCT---A------AA-TCCGC---------C---A-CT-ACC--GAT-CATT-CAA-AGTAG-CGC-CGG-TTTGATG-TTCC-A-TC--AG-AT-AC----A--GGGAT---G----CTGCAA-CTGAG-------------AATTTCCA-A
gi|16 : gggggggggctatactcggattaacacacgcctttccgtcattaaatttagtgaccagtgatcgatttcagactattgagaattgttttcactaactgtttctACTACCTTTGGCAAAAT-AAAA---CC--TGTTTC---C-ACTG---G--GTAA--AT---AACAATTTGACTCT--TTGT-GAAAGGGC-ATAATTATATGTTC-TTCCTCTAGCCCGGCGACCTGCA-AGAAT-CAAACTTCTC--TC--A--AA--GAGTT---GAT-CA-A-AGA---AA---AAGTCACC-CCG-ATCAGGC----G-CGGA----TCCAGGATTtaaggccagcgtttgcaacgacaattagnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngtaaaattctccagatttcaataacctgatgcaatcactattttgccc
gi|2 : ttttagatattgaagaagcaggccgagaaaaccaggttctatACTACCTGTGGCGAAAA-AAAACCTTTAGTGTTTC---C-AATG---G--GTAA--AA---AACAATTTGACCCT--TTGT-GAAAAGG---TACA------TTT-TTCCTCTCGCCCTGCAA-----CTTGCAT-CAAACGTCTC--TC--A--GA--G---C---GCT-GGCA-AAA---CA---AAGCCACC-CCG-ATCGGG-----G-CCGA----TCCAGGATTTGAGGTTAG-AGG-GGGCCGCAACTT--TA-------TAAGACAAG-GGGGCTGAGGGGATt
gi|36 : ttctgggagaaaaatggggaaaaactattcggatcgacacaccgtagcgtcgcctgattctaaactatttaccacccattgatttccggttattgacaaagaagttcaagaactgtttccACTATCTGTGGCAA-----------------TTTC---C-ACTG---G--GTAA--AT---AACAATTTTACCCT--TTGT-GAAAGGGC-GTATT------TTC-TTCCTTTAGCCCGACGA-----CTTGCAT-CAAACcatagggctgaattcgtttatttctcagacagtcgaacaaaaaatgattagatatgaaaattttaggggggggggggcagcaccgagtatgcctcctctaaattcaccactgccgatcaatcaaagtagcaccggtttgatgtttcaacagatannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngccagcgtttgcaatgacaattannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntcagttataaataattatatgtagcattttccagagttcggcaa
gi|14 : cagttcgcaaaactggttctACTGCTTGTGGCGAAGA-AAAAAT-TC--TGTTTC---C-ACTG---G--GTAGATAT---AACAATTAGACCCTAAATGT-GAAAGGGT-AT
gi|11 : gagaaaattttaatcggataaacacagccgttccgtcgaatggtttttaatttatttaacaggaattttatatgctataaataaaagcaataaattttccttattggcatctaggctagcgaagactaaaacgtcgaagatgttcgagaactaattct--TGTTTC---CTACTG---G--CCAGCCATGGCAACAATTAACCCCT--TTGTTAAAAAGGCTATATT------TTC-CCTCTC--GCCCTGCGG-----TT--CATATAAACTTCTC--TC-----GA--GAATT---AGTCAA-A-GAA---CA---AAGCCACCTTCG-ATCAGGC----GCCGGA----TCTAGGATTTAATGTTACGAGG-GGG-CACAACTT--Ca
gi|20 : ccggtgattgacgaagcagttcgaaaac--TGTTTC---C-ATTG---G--GTAG--AT---GATAATTTGAATAA--TTGT-GAAA-GGC-A-----------TCAATTTTCT--CCC----A-----A--------AGACTTC-----------------------GTT-AA---AGA---CA---AAGGCACT-TCG-ATCAGGG----G-CGGA----TGTAGAATTTG-GGTGGC-ACcagggatcagatagcaagccacacctaaattgcttagttctacagtacaaaacactagcgatgaaa
gi|26 : accagcgatcgactaccggttatagacgaagcagcattctactgcttgggtgaaaaaaccccaaaagcacGTTTC---T-ACTGCCTGTTATAA--AT---AACAATTTGTCCAT--ATGT-GAAAGGGC-ATTTT------TTC-TTCCTCTAGCCTGGCGA-----CTTGCAT-CAA--TTCTC--TC--A--GA--GAGTT---GAT-GA-A-AGA---CA---AGTCCACC-CCG-ATCAGGC----G-CGGA----TCCATGATTTGAGGTTAC-AGG-GGA-CAAAACTT--CA-------TGAGGatctttatt
gi|43 : GTTTCAAAC-CCTG---G--G-AA--AT---GACAAGTTGACCCT--GTGTAAAAAGGGT-TTACT------TAT-TTCCTCTCGCCCgaagagg
gi|25 : T--TTGT-GA--GGG--ATA--------TTC-TTTTACTA---CGGC--------TTGCAT-CAA---TTTTAATC--ATCGA--GT--TCTTGGT-CA-ACAAAGCTCACTTAAGCCACC-TCGAATGAGGTGAAGG-CGGGATTTTCTAGGATTTGAGGTT-T-AAG-GGG-GACAACTTAGGA-------TGAGTCGCAAGGGG--Gtg
gi|10 : tttaggcaAAATTTCTC--TG--A--GAATGC--T---GGT-CA-A-ACA---CA---AAACAACC-TTG-ACCAGGG----G-AGGA----TCCAGGACTTGATATTAG-AGG-AGC-GAAAATTT--TA-------AGAGGC-----AGG--GTGTCTGTGG----TCCCTAGAGATTT----A-AAA-TACCGA-----A---AGC---------------CTC----TTGTAAAG-C--ATTTACACGGTTAAAAGTATAT--CTTTCATGTGGTCATTTTTtctcgagggaataat
gi|23 : C-CCG-ATCAGGC----G-CGGA----TCCATGATTTGAGGTTAC-AGG-GGA-CAAAACTT--CA-------TGAGGaatatttttctcattttttgattcacaaaatgtaacatttttttaaaacatgaatttttatgatcaatgtcacaataaatcaaatgatg
gi|4 : C-TCG-AACAGGG----G-CGGA----TCTAGGATTTGAGTTTAT-AGG-GGA-gaagaggtctgacnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnttgatgaggtgaaattaatgaaa
gi|45 : G-ATCAAGG----A-CGAG----TCCAGGATTTGAGATTAG-ATGCGGG-CGCAACTT--TA-------TAAGGCactgaggggtctgtnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnttaatgaggtgaaattaataaaatgacacaaaatttatgaggttttttttttttaaatataaaggaattaatagtaacaaaaaagtcgaaaataattattttaatatataatgtgtagagggcgccgggtgcgcaccgtctaaatctgcagataattcaaagtagagctggtttgatatccaatcagatatacatgtaggcatgacctttc
gi|39 : acg-------TGAGTCCTGCGGGGA-GAGGGA-----AAATCCT---AGATTTTACAA-GAG-TA--GA-----A----GTTGAAGAAGTTGACTACTC----CCATGTAG-TC-ATTT------TTAA---TATagg
gi|19 : C---AGAGTTTATAAAGAG-TA--GA-----AGTATGT---------------CTT----CCATGTTG-TTAACTT------GTAA---TATTT-TCT--------GTCATTTTATT--GAGGT--GAAATTAATAAAA-----TGAC-A-tttct
gi|7 : tccaattgggacagctcccggattttagC---ACATTTTATAA-ATGCTA--GA-----AGTACGT---------------CCCTAAGCCATGCAGGC--ATTT------TAAA---CATTTTACT--------GTC--TTTTCGATGAAGTTTAGAATTA-TAAAA-----TGAC-AACAAAAAATTTacatttttcttttaaaataaaatatcaattctcccaataatgcaacataaactcaaattgtcgttctatttcaaagaagatcga
gi|44 : tcaaaggtggagtccaggattttgattggtatagcacacaaacttaagagattctgaggccctcagaggaataagctccaagaagcttctgaatttgtaa-----A---TGT---------------CTC----CCATGTAG-TC-ATTT------TCAA---TAT-----T---------TTATTTTT-TATAAGGT--GAAAATGATAAAC-----TGAC-A-CAttcatggtttgatttcaaaagaaagacgtgtaaatttaattgtttaagtttgaaaaatagagtaaagggggaggggggatgcaaccttctaaatccgtcaactactaaatcca
gi|29 : TT------TCAA---TATTT-TCT--------TTCACTTTTTTATGAGGT--GAAACTGATGAAA-----TGAC-A-CTAAG--TTTAAGGATTT--CTTGG
gi|47 : tcaagggccgaagctcctggaatttacagatattataaggtttgaaCT--------GTAATTTTTTTACTGGGA--AAAATTAATTAAA-----TTAC-A-CAgggaaaatatgatttgcaaatataagtaactagaaaccaa
gi|40 : aagagaggtccgccgTTTTTAATGAGGT--GAAATTGATAAGA-----TGAC-A-C-AAT--TTTAAGAATTT--TTTGGAatt
gi|6 : tttcagtactctaaTTTTTATAAGGT--GAAATTGACAAAT-----GAAC-A-CAAAA--TTTAAGAGGTTTaaaaaatataagttctaacaata
gi|8 : TTTATTAGGT--GAAATTAATAAAA-----TGAC-A-CAAAA--TTTAGAGGTTTTttaaatatttatttatttattttttgtttttggaatagaatataaattttccaaataaaagcaacaataattcaattgtcgtttatttcaannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnatttaatttagggggcaccgggtgcgaaccgcttaatcctccactgccgatcatctaacgtagcgccggtctatgttccatcacatacagacatgacctttcaagtgagacgtagatagttcccattggtgtaggactgtctttg
gi|4 : TTAATGAGGT--GAAATTAATAAAA-----TGAC-A-CAAAA--TTTATGAGGTTTTTTTtaaaaaaaattatttatctatttatttttggaataaatataaattctcaaataaaagcaacaataattcaatgtcgttttttcaaaagagttctaaactaatgattaattttagggggacacgggtgcgaacccgctaaatcaccactagccgattattcaaagtagcgcgggtttgatgttccatcagatacagacatgacctttcaagtgaaacgtaggataatttccataggccgtagtactgtctt
gi|22 : ctcgaacaggggcggatctaggatttgagtttataggggaactgaggggtctgtnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnTAT-AGGT--GAACTTAATAAAA-----CGAC-A-CGAAA--TTTAATAGTTTTTTTTtttttaaatataaaggaattaatagtaacaaaaaagtcgaaaataattattttaatatataatgtgtagagggcgccgggtgcgcaccgtctaaatctgcagataattcaaagtagagctggtttgatatccaatcagatatacatgtaggcatgacctttc
gi|22 : GGAATAAATA-A----TAAATTCTCC--AAA-TA-AAAA-GCA--A-CAATA-AT-T-CAtttttttttaattatttatcaattttggaataaataataaattctccaaataaaaagcaacaataattcaataggggacaaccgactgcgaaaccccgctaagatcattcaagtagcgccggttttaatgtttcatcagata
gi|12 : tataggtgaacttaataaaacgacacgaaatttaatagtttttttttttttttttaattatttatcaattttGATAAAAA-AA-TATAGATTCTCA--AAA-TA-AAA---TA--A-CAATA-AA-T-CA-ATCGTCGTT---TAT--TT--C--A------GA-GT-CG---AA--AAT--A-ATAAT-CAAAATATGAA-------------AT-TA----T---------------AG---GTGGGC-------GCA---ACCTTT----A------AA-TCTGC---------C---A-CT-ACC--GGT-CATT-CAA-ATCAG-CAC-TAG-TTTGATG-TTCC-T-TC--AG-AT-AC----A--GGCCT---AT-CCTTTTAA-CTGAG-ACGT-A-G-ACAA--TTCCA-AA-ACataggggacaaccgactgcgaaaccccgctaagatcattcaagtagcgccggttttaatgtttcatcagata
gi|19 : taaaattaatacattgacacaaaatgtttttAAATA-AAATATCAATTCTCCCAA---TA-AT---GCA--A-CA-TA-AACT-CAAATTGTCGTTCTAT----TT--C--AAAGA-AGA--T-CG---Atcccaccggttgcaatgaaaatta
gi|34 : tccaattgggacagctcccggattttagcagagtttataaagagtagaagtatgtcttccatgttgttaacttgtaatattttctgtcattttattgaggtgaaattaataaaatgacaacatttttcttttaAAATA-TA-TAAAAATTCTCA--A---TA-ATG--ATATTA--AATA-AA-T-TA-ATTGTCGTT---TATTTCT--C--AGA----GA-GT-TA---AA--AC------------AAATT------------------AT-TT----TAATTG-GG------GAG---GGGGGG-------GGG---GC----------------------T---------C---A-GT-GTC--AAT-CATT-TAA-A
gi|35 : AAATA-TA-TAAAAATTCTCA--A---TA-ATG--ATATTA--AATA-AA-T-TA-ATTGTCGTT---TATTTCT-------A-G-CGA-GT-TA---AA--AC------------AAATT------------------AT-TT----TAA--TTGG------GAG---GGGGGG-------GGG---GC----------------------T---------C---A-GT-GTC--AAT-CATT-TAA-A
gi|8 : AATA-AA-TATAAATTCTCA--AA--TA-AAA--GCA--A-CAATA-AT-T-CA-AT-GTCGTT---T----TT--T--CAA-A-AGA-GTTCT---AA--ACT--A-ATGAT-TAA------------------------TT----TTA--G-GG------GGACACGGGTGC-------GAACCCGCT-------A------AA-TC-AC---------C---A-CTAGCC--GAT-TATT-CAA-AGTAG-CGC-GGG-TTTGATG-TTCC-A-TC--AG-AT-AC----A--GACAT---GA-CCTTTCAA-GTGAA-ACGT-AGG-AT-AATTTCCA-
gi|6 : tttattaggtgaaattaataaaatgacacaaaatttagaggtttttaaaaaaaattatttatctatttatttttggAATAGAA-TATAAATTTTCC--AAA-TA-AAA--GCA--A-CAATA-AT-T-CA-ATTGTCGTT---TAT--TT--C--AAN-N-NNN-NN-NN---NN--NNN--N-NNNNN-NNNNNN-NNNNNNNNNNNNNNNNNAT-TTAAT-TTA--G-GG------GGC---ACCGGG-------TGC---GA--------ACCGCTTAA-TCCTC---------C---A-CT-GCC--GAT-CATC-TAA-CGTAG-CGC-CGG--TCTATG-TTCC-A-TC--AC-AT-AC----A--GACAT---GA-CCTTTCAA-GTGAG-ACGT-A-G-AT-AGTTCCCA-taggccgtagtactgtctt
gi|17 : tttttataaggtgaaattgacaaatgaacacaaaatttaagaggtttttaaatatttatttatttattttttgtttttggATTCTCC--AAAATA-AAAA-GCA--A-CAATATAA-TTCA-ATTGTCGTT---TATT-TT--C--AAA-A-A-A-GT-CT---AA--ACT--A-ATGAT----------AA-------------AT-TT----T---------------AG---GTGCGA-------GCC---GCTA------A------AA-TCCAC---------C---A-CT-GCC--GAT-CATT-C-A-AGTAG-CGA-CGT-TTGAATG-TTTC-A-TC--AT-AT-AT----ACTGACATG--AC-CCTTTCAA-GTGAG-ACGT-A-G-AT-AATTTTCATAG-GCG-TAGttggtgtaggactgtctttg
gi|21 : aATTCTCC--A---AT-AAA--GCA--A-T--------T-CA-ATTGTCGTT---TACT-TT--C--AAA-A-AGA-GT-CT---AA--ACT--A-ATGAT----------AA-------------AC-TT----TTA--G-GT------GCG----------------------------------------A-CCCGCTTAGAATTAC---A-CT-GC---GAT-C-TT-CAA-AGTAG-CGA-CGG-TTTGAT--GTTT-A-TC--AT-AT-AC----A--GAC-T---G--ACTTT--A-GTGAGAACGT-A-GAATAAGTgttactgtctttga
gi|9 : ATTCTCC--AAA-TA-ATA--GCA--ATCAATA-AT-T-CA-ATTGTCGTT---TA---TT--T--AAA-A-AGA-GTCCT---AA--ACT--A-ATGA--TAAAT-------------------AT-T---------------------------AGGTG-------CGA---ACTCCCTT--A------AA-TGCAC---------C---A-TT-GCC--GAT-CATT-CAA-AGTAG-CGA-CGG-GTTGATGTTTTC-A-TCATAT-AT-AC----A--G-CAT---G--ACCT------------CGT-A---AT-AATTTTCATAG-GCG-TAGaagtccatagttggactgtctttta
gi|27 : aTTCTCA--AA--TA-AA----CC--A-CAATA-A--T-CATA--GTCGTT---TAT--TT--CG-AAA-A-AGA-GT-CTT--AA--ACT--A-ATGATGTA-------------------------TT----TTA--G-GT------GCG---AAACCC-------G------CT-------A------AA-TCCAC---------C---A-CT-GCCG-GAT-CATT-CAAGAGTAG-CGA-CAG-TTTGATG-TTTC-A-TC--AATAT-AC----A--GACATGGGAT-CCTTTCAA-GTGA--ACGT-gactgtccctttgaagagcatggaagggggagggggaggccaaacttctagtaatgcgacgaaaggcaaaattcaaaaaagctaatggaacactaaat
gi|5 : atTCTCA--A---TA-AAA--GTA--A-CAATA-CG-T-CA-ATTAACGTT---TAA--CT--G--AGA-G-AGA-GT-CG---AA--AAT--A-ATGAT-TATATA-TGAA-------------AA-TT----GTA--A-GG------GGG---CGGGGG-------CAG---GT------------------TGCGC-------------A-CC-CCCTAAAT-CATT-CAA-AGTAG-CGA-CGG-TTTGGTG-TTCC-A-TC--AG-AT-AC----A--GTCCT---GT-TCTTTCAA-CCGAA-ACGT-A-G-AC-AATTTGCA-AA-AC
gi|33 : aatttaaatttttttgaaaaaattaTCTCC--AAG-TA-AAA--GCA--A-CAATA-AT-T-CA-ATTGTCTTT---T----CTTTC--AAA-A-AGA-GT-AT---AA--ACT--A-ATTAT-TAA------------------------TT----TTA-------------GG---TGCGAA-------CCC---GCT-------A------AA-TCCAC---------C---A-CT-GCC--GAT-CATT-CAA-AGTAG-CGA-CGG-TCTGATG-TTCaaacaacatttgcaatgacaattaannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncattatatgtagcattttccagagttcggcaacttgatacaactattttgccttacc
gi|13 : TCTCC--A---AATAAA--GCA--A-CAATA-AT-T-CA-A-TGCAGTT---TA---TT--C--TAA-A-AGA-GT-CT---AA--A------------TAA----TGAA-------------ATATT----TTA--G-GGCCTCCC-------------------------GT--------A------AA-TC--C---------C---A-C--G--------CATT-CAA-AGTA---GCACGG-TTT-ACG-TTCA-A-T------AT-A-----A--GACA----ATGACCTTCAA--TGAG-AC-----G-ATAA--TTTCA-AG-
gi|18 : a--A---TA-AAA--GCA----CAATA-AT-T-CAT--TGTCGTT---T----AT--TTAAAA-A-AGA-GT-CGT--AA--ACT--A-ATGAT--AAATT-TTAG----------------------TT---------------------GGAA-------CCA---GC--------T------AA-TCC-C---------C---A-CT-GCT--GCT-TATT-CAA-AGTAGTCGA-CAC-TTTGATG-TTTC-AGTC--AT-ATGACCTGTA--GACA----GT-GACTTCAA-GTGAG-ACGT-A-G-AT-AATTTCCA-gtcggactgcttttgagagaggggggaggggggaaacttctagtaatgcgacagcgcaaaaatcaaaagcctaatggaacactaaat
gi|7 : tttccaaa--A---TA-AAATGACA--A-CAAAA-AA-T-TTT-TCATGGTT---TGAT-TT--C--AAA-AGAAA-GA-CGTGTAA--ATTTAA-TTGTT-TAAGTT-TGAA-------------AA-ATAGAGTAA--A-GG------GGG---AGGGGG-------GAT---GCAACCTTCTA------AA-TCCGT---------C---A-tagcgttaggactgtatttga
gi|30 : tcaaaggtggagtccaggattttgattggtatagcacacaaacttaagagattctgaggccctcagaggaataagctccaagaagcttctgaatttgtaacacattttataaatgctagaagtacgtccctaagccatgcaggcattttaaacattttactgtcttttcgatgaagtttagaatt-AAA--GCA--A-ACATA-AT-T-CA-ATTTCCGTT---TAT--TT--C--AAA-A-AGAAGT-CT---AA--ACT--G-ATGAT-TGCAGT-T-AG-------------GT-TT-------------------------GCGTAA-------CCC---GCT-------A------AA-ACCAC---------C---A-CTTGCC--GATTCATTTCAA-AGTA--GAC-CAG-TTTGATG--TCC-A-TC--AG-AT-AC----A--GACAT---actactaaatcca
gi|2 : ttaccaaatTT---T----CT--C--AGA-C-AG---T-CG---AACAAAA--A-ATGAT-TAGATA-TGAA-------------AA-TT----TTA--G-GG------GGG---GGGGGGCAGCACCGAGTATGCCTCCTCT-A------AA-TTCAC---------C---A-CT-GCC--GAT-CAAT-CAA-AGTAG-CAC-CGG-TTTGATG-TTTC-A-AC--AG-AT-At
gi|4 : ttctgggagaaaaatggggaaaaactattcggatcgacacaccgtagcgtcgcctgattctaaactatttaccacccattgatttccggttattgacaaagaagttcaagaactgtttccactacctgtggcgaaaaaaaacctttagtgtttccaatgggtaaaaaacaatttgaccctttgtgaaaaggtacatttttcctctcgccctgcaacttgcatcaaacgtctctcagagcgctggcaaaacaaagccaccccgatcggggccgatccaggatttgaggttagagggggccgcaactttataagacaagggggctgaggggatcatagggctgaattcgtttaAA-A-AAA-GT-CG---AA--AAT--AATTATT-TTAATA-TATA-------------AT-GT----GTA--G-AG------GGC---GCCGGG-------TGC---GC--------A----------CCGT---------CTAAATCT-GCA--GAT-AATT-CAA-AGTAG-AGC-TGG-TTTGAT--ATCCAA-TC--AG-AT-AT--------ACAT---GT-Annnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngccagcgtttgcaatgacaattannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntcagttataaataattatatgtagcattttccagagttcggcaa
gi|46 : ctcgaacaggggcggatctaggatttgagtttataggggaactgaggggtctgtnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnttaatgaggtgaaattaataaaatgacacaaaatttatgaggttttttttttttaaatataaaggaattaatagtaacAATG-TGAA-------------TT-TC----TTT--G-GG------GGG---GGGGGG-------GGG---GC--------A------AATTTCG----------A---A-CT-GTA--AAT-AATT-TAA-Aggcatgacctttc
gi|22 : --GAT-CATT-C-A-AGTAG-CGC-CGGTTTTAATG-TTTC-A-TC--AG-AT-A
gi|24 : tataggtgaacttaataaaacgacacgaaatttaatagtttttttttttttttttaattatttatcaattttggaataaataataaattctccaaataaaaagcaacaataattcaataggggacaaccgactgcgaaaccccgctaaTT-CAA-AGTA--CGCGCAG-GTTGATG-TTCC-GGTC-----------------------------CTTTCAAACTGAG-GCGTTA-G-A-AAATTTCCA-AATACGTCAGC
gi|51 : TGAG-ACGT-A-G-AT-AATTTCCA-atggtcagtgacaattannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnagtatatgtaacattttccacaga
11 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|15 ): TCAAAGGTGGATCCCAGGATTTTGAGGTTGAGCACCACAACTTAAGGAGATCCAGAGGCCTCAGCTACGGGATAACGCTTCCAAGAAGTGCTTCTGATATTGTACACATTTTATTAAAGCTACCGAAAGTCACCAAAGTCCTTAAGAGCATGACCAGCGACATTTTAAAACATTTTCGTCATTTTCGGATGAGTTAGAATTTAATAAAATACACAAAAAAATT
Unaligned ( gi|28 ): GGAGGAAACTTCTCGTAATGCAGACAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGAAAATTAAAGAAAGGTTATCAGAAAACTGAAGGGGACATTACAAATTATAAGTCAGATGC
Unaligned ( gi|31 ): GGATTTCGGGAGAAAATACTCTACTCGATAAACCACGCCCGTTCCGTCACCTGTTCTAAATTTATTATTGGACCTATGGCGCTAGCCTGACTTTAGTCGAAGGCAGTTTGAGAACTGTTTCTACTGCCTGTGTCGAAGGGGAAAAGAAATTC
Unaligned ( gi|32 ): GATATATAATCTTTATAAAACTAAGAGGGGGCGCCGTGTGTAATTTATTAATTTTTTCAGTGAAAAATAAGATTATATATAATACACTTGGTAAATTTAAGGGGGGGGGGCGCCGGTGCGCCCACCCCTTAAATCCGCCACT
Unaligned ( gi|37 ): TATTTAAATGGGGGTTATAAACACAAGAAAATTAAGAAAGTAATAGAAAACTGAAGGAGGGGGATGCAATATTATGTTCATATGCAGAAAAATGTATACAAGGGGGGGGGGG
Unaligned ( gi|38 ): AGCCACCTCGAAGTGTAGATGAAGGCGGGACTCTTTCTAGGATTTGACGGTTAAGGGGACAACTTTATGGATGAGGCAAGGGGTCTGAGGGAATAAT
Unaligned ( gi|41 ): GGGGGAGAAATTGAGGAAAACCGGCCTCCACTCAGATCAACAAGCCATTCCGTCGCCTGGTTCTAAAGTTATTTACAAGCGATCG
Unaligned ( gi|42 ): CTGTCTTATGAAGAGGGGGGAGGGGGGCAAACTTCTAAACTATATGCGACACAATGAACCAGAAATTTGATG
Unaligned ( gi|48 ): CTGTGACTTTGATGCAGAAGGGGGGGGGGGTAAACTTCTAAATTATGTGC
Unaligned ( gi|49 ): GCACAGAGTGGTATGGGGGAGAGACCTGTCAAACTTCTAGTATATGGA
Unaligned ( gi|50 ): AGTTCGAGAACCGTTTTACTGTCTGTGGCGATTTCGACTGGGTACA
Alignments
lowQualScore : 11111111111111111111111111111111111111111111111111111111111111111111111 1111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 333333333333333333333333333333 11 11111 333333 111 11 111111111111111 33333333333333333333333333 111 444444444444444444444444444 1111 111111 111 1111111 77777777777777777777777777777777777777777777777777777777777777777777777 11 2222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222 11111 1
lowQualScore : 888888888888888888888888888888 777 4 777 55 11 777 55 7 44 88 00000 11 7 2 9999 22 4 888 777777 2 999 4 222 777 3 3 1 9999 6666 2 2 3 33 3 33 555 444444444444444 44444444444444444444444444 111 0 77 5 77 888888888888888888888888888 0000 00 4 111111 111 777 3333333 0 2 77 2 44 3 3 3 9999999999 88888888888888888888888888888888888888888888888888888888888888888888888 33 4 444 44 66 55 2 22 3 2 2 333 2 2 2 2 2 333 4 4 55 22 1 2 2 2222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222 333 2 4 2 2 1 1 2 2 2 2 2 2 2 33 33 2 99999999999 33 0 2 99999 66 2 2 3 3 3 0 888 8
lowQualScore : .............................. ... . ... .. .. ... .. . .. .. ..... .. . . .... .. . ... ...... . ... . ... ... . . . .... .... . . . .. . .. ... ............... .......................... ... . .. . .. ........................... .... .. . ...... ... ... ....... . . .. . .. . . . .......... ....................................................................... .. . ... .. .. .. . .. . . . ... . . . . . ... . . .. .. . . . ............................................................................................................. ... . . . . . . . . . . . . . .. .. . ........... .. . . ..... .. . . . . . . ... .
lowQualScore : 888888888888888888888888888888 000 0 000 55 00 000 00 3 00 66 00000 55 9 9 4444 44 4 111 111111 6 333 4 222 888 6 1 0 6666 1111 9 9 1 55 1 66 888 333333333333333 44444444444444444444444444 777 4 11 7 99 111111111111111111111111111 6666 22 4 555555 000 000 3333333 8 4 33 5 22 1 1 1 4444444444 22222222222222222222222222222222222222222222222222222222222222222222222 88 0 000 88 88 55 0 88 0 0 0 777 1 1 1 1 0 555 0 0 00 99 9 1 1 2222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222 555 0 2 0 0 9 9 2 2 5 2 2 2 4 22 66 4 66666666666 77 6 7 99999 55 9 9 1 1 1 0 111 0
consensus : ACTGCCTGTGGCGAAGN-A-----A------AA--NC--T-----GTTTC---C-ACTG---G--GTAA--AT---AACAATTTGACCCT--TTGT-GAAAGGGC-AT--ATT-----TTCTTCCTCTAGCCCGGCGACTTGC----ATCAAACTTCTC-TCA--GAG-NGT--TGGTCA-A-AGA---CA---AAGCCACC-CCGA-TCAGGGG----CGGA----TCC-AGGATTT-GA-GGTTAN-A-GGGGG-CAC---AACTT--C----A-------TGAGGCNCGCGGGG---GAGGGGATG-G--GCTCCC---AGATTTTACAA-GAG-TA--GA-----AGTATGT---------------CTC----CCATGTAGTCA-TTT------TTAA---TAT---TTT-C-T---GTCATTTTTTTATGAGGT--GAAATTAATAAAA--TGA-C-A-CAAAAT---TTAAGA-GTT--------------------TT--------TTTTG--TTG--GGG------------G--AA-------ATAAATA-AATATAAATTCT-C-C-AA--TAAAA--GCA--A-CAATA--ANTC-A-ATTGTC---GTT-T-A-TTTC-AAA-A---AGA-GT-CN-AA--ACT-AAT-GAT-TA-AATT-TGAA-------------ATTT----TTAGGGGGGGGGGGG--GG-----C-GC----------------A------A-------A-TCCGC---------C---A-CT-GCCG-AT-CATT-CAA-AGTA-G-CGCCGG-TTTGA-TG-TTCCA-TC--AG-AT-A------C----A--GAC-ATG---NCCTTTCAAG-TGAG-ACGT-A-G-AT-AATTTCCA-AG-G-CGT-AGC
Reference ( family-325 ) : ACTACCTGTGGCGAAGA-A-----A------AA--TC--T-----GTTTC---C-ACTG---G--GTAA--AT---AACAATTTGACCCT--TTGT-GAAAGGGC-AT--ATT-----TTCTTCCTCTAGCCCGGCGACTTGC----ATCAAACTTCTC-TCA--GAG-N-T--TGNTNA-A-AGA---CA---AAGCCACC-CCGA-TCAGGNG----CGGA----TCC-AGGATTT-GA-GGTTAC-A-GGGGG-CAC---AACTT--C----A-------TGAGGCNCGCGGGG---GAGGGGNTG-G--G-TCCC---AGATTTTACAA-GAG-TA--GA-----A---TGT---------------CTC----CCATGTAGTCA-TTT------TTAA---TAT---TTT-C-T---GTCATTTTTTTATGAGGT--GAAATTGATAAAA--TGA-C-A-CAAAAT---TTAAGA-GTT--------------------TT--------TTTTGGACTG--GGG------------G--AA----GGGATAAATA-AATATAAATTCT-C-C-AA--TAAAA--GCA--A-CAATA--ANTC-A-ATTGTC---GTT-T-A-TTTC-AAA-A---AGA-GT-CN-AA--ACT-AAT-GAT-TA-AATT-TGAA-------------ATTT----TTAGGGGGGGGGGGG--GG-----N-GC----------------A------A-------A-TCCGC---------C---A-CT-GCCG-AT-CATT-CAA-AGTA-G-CGCCGG-TTTGA-TG-TTCCA-TC--AG-AT-A------C----A--GAC-ATG---TNCTTTCAAG-TGAG-ACGT-A-G-AT-AATTTCCA-AG-A-CGT-AGC
gi|1 : ACTGCTTTTGGTGAAGGGA-----A------AA--TA--T-----GATTC---C-ATTG---G--GTAA--AT---AACAACTTGACCCT--TTGT-GAATGGGT-AT--ATT-----TTC--CCTCT--CCCTGTGGCTTGC----ATCAAACTTCTT-TCT--GAG-AGT--TGTC---A-AGA---CG---AGGCTGCC-CCGA-TCAGTGG----CGGA----TCC-AGGATTT-GA-GGTTA------GCG-CAC---AACTT--C----AGGAGATCTGAGTCCCTCAGAG---G----GCTA-G--GCTCCT---TGATTTTACA--GAT-TT--TATTTATA---TGT---------------CTC----TCACTTAATAA-TTT------TTTA---TAT---TCT-C-T---GTCATTTTG--ATGAGAT--GGA-CTGATAAAAATTGG-C-AACAAAAAAAATTAAG-----------------------------------TTTT---CTG--GGG------------G--AA---------AAATA---TATCAATTTT-C-CTAA--TAAAG--GTA--A-CAAGA--AATC-A-AATGTG---GTT-T-A-TTAC-AGA-G---AAA-GT-TG-AA--A----AT-AAT-TA-G-TT-TGAA-------------AATA------ATGGGTGAGGGTG--TG-----C-ACCCTCT-----------A------A-------A-TCCGC---------C---A-CT-ACCG-AT-CATT-CAA-AGTA-G-CGCCGG-TTTGA-TG-TTCCA-TC--AG-AT-A------C----A--GGG-ATG------CTGCAAC-TGAG-------------AATTTCCA-A
gi|10 : gggggggggctatactcggattaacacacgcctttccgtcattaaatttagtgaccagtgatcgatttcagactattgagaattgttttcactaactgtttctAAATTTCTC-TGA--GAA-TGC--TGGTCA-A-ACA---CA---AAACAACC-TTGA-CCAGGGG----AGGA----TCC-AGGACTT-GA-TATTAG-A-GGAGC-GAA---AATTT--T----A-------AGAGGCA----------GGGTGTCTGTG--G-TCCCTAGAGATTT----A-AAA-TACCGA-----A---AGC---------------CTC----TTGTAAAG-CA-TTTACACGGTTAAAAGTATATCTTT-CATGTGGTCATTTTTtaaggccagcgtttgcaacgacaattagnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngtaaaattctccagatttcaataacctgatgcaatcactattttgccc
gi|10 : TTTACAC-GGT-TA--AA-----AGTATAT---------------CTT----TCATGTGGTCA-TTT------TTAA---TAT---TTT---T---CTCATTTTTTGATaatatttttctcattttttgattcacaaaatgtaacatttttttaaaacatgaatttttatgatcaatgtcacaataaatcaaatgatg
gi|11 : aaatttctctgagaatgctggtcaaacacaaaacaaccttgaccaggggaggatccaggacttgatattagaggagcgaaaattttaagaggcagggtgtctgtggtccctagagatttaaaataccgaaagcctcttgtaaagcaTGACGAAGC-AGTTCGA------AA--AC--T-----GTTTC---CTACTG---G--CCAGCCATGGCAACAATTAACCCCT--TTGTTAAAAAGGCTAT--ATT-----TTC--CCTCTCGCCCTGCGGTTCAT----AT-AAACTTCTC-TC---GAG-AAT--TAGTCA-A-AGAA--CA---AAGCCACCTTCGA-TCAGGCGC---CGGA----TCT-AGGATTT-AA-TGTTACGA-GGGGG-CAC---AACTT--C----tcacaaaatgtaacatttttttaaaacatgaatttttatgatcaatgtcacaataaatcaaatgatg
gi|12 : ccggtgatT--AAAATTAATACAT--TGA-C-A-CAAAAT----------GTT--------------------TT--------T-------------------------------------GATAAAAA-AATATAGATTCT-C-A-AAA-TAAAA---TA--A-CAATA--AATC-A-ATCGTC---GTT-T-A-TTTC-A--------GA-GT-CG-AA--AAT-AAT-AAT-CA-AAATATGAA-------------ATTA----T---------AGGTG--GG-----C-GC----------------A------ACCTTTAAA-TCTGC---------C---A-CT-ACCG-GT-CATT-CAA-ATCA-G-CACTAG-TTTGA-TG-TTCCT-TC--AG-AT-A------C----A--GGC-CTA---TCCTTTTAAC-TGAG-ACGT-A-G-AC-AA-TTCCA-AA-A-Ccagggatcagatagcaagccacacctaaattgcttagttctacagtacaaaacactagcgatgaaa
gi|13 : TCT-C-C-AA--ATAAA--GCA--A-CAATA--ATTC-A-A-TGCA---GTT-T-A--TTC-TAA-A---AGA-GT-CT-AA--A-T-AAT-G----A-AAT-------------------ATTT----T------------AG--GGCCTCCC-GT----------------A------A-------A-TC--C---------C---A-C--G-------CATT-CAA-AGTA-G-CA-CGG-TTT-A-CG-TTCAA-T------AT-A-----------A--GACAATG----ACCTTCAA--TGAG-AC-----G-AT-AATTT-CA-AG-tcccaccggttgcaatgaaaatta
gi|14 : aACTGCTTGTGGCGAAGA-A-----A------AAATTC--T-----GTTTC---C-ACTG---G--GTAGATAT---AACAATTAGACCCTAAATGT-GAAAGGGT-AT--Agtcggactgcttttgagagaggggggaggggggaaacttctagtaatgcgacagcgcaaaaatcaaaagcctaatggaacactaaat
gi|15 : gagaaaattttaatcggataaacacagccgttccgtcgaatggtttttaatttatttaacaggaattttatatgctataaataaaagcaataaattttccttattggcatctaggctagcgaagactaaaacgtcgaagatgttcgagaactaattct-TCAAAGG----TGGA----TCCCAGGATTTTGA-GGTT-------GAG-CACCACAACTT--A----A-------GGAG
gi|15 : CA-TTT------TAAAA--CAT---TTT-C-----GTCATTTTCGGATGAGTTA-GAATTTAATAAAA--T-A-C-A-CAAAAatccagaggcctcagctacgggataacgcttccaagaagtgcttctgatattgtacacattttattaaagctaccgaaagtcaccaaagtccttaagagcatgaccagcgacattttaaaacattttcgtcattttcggatgagttagaatttaataaaatacacaaaaaaatt
gi|16 : tcaaaggtggatcccaggattttgaggttgagcaccacaacttaaggagatccagaggcctcagctacgggataacgcttccaagaagtgcttctgatattgtacacattttattaaagctaccgaaagtcaccaaagtccttaagagcatgaccagcgaACTACCTTTGGCAAAAT-A-----A------AA--CC--T-----GTTTC---C-ACTG---G--GTAA--AT---AACAATTTGACTCT--TTGT-GAAAGGGC-ATA-ATTATATGTTCTTCCTCTAGCCCGGCGACCTGCAAGAATCAAACTTCTC-TCA--AAGAG-T--TGATCA-A-AGA---AA---AAGTCACC-CCGA-TCAGGCG----CGGA----TCC-AGGATTT-aaatt
gi|17 : ttttagatattgaagaagcaggccgagaaaaccaggttctatAATTCT-C-C-AAAATAAAAA-GCA--A-CAATATAATTC-A-ATTGTC---GTT-T-A-TTTT-CAA-A---AAA-GT-CT-AA--ACT-AAT-GAT-----------AA-------------ATTT----T------AGGTGCGA--GC-----C-GCTA--------------A------A-------A-TCCAC---------C---A-CT-GCCG-AT-CATT-CAA--GTA-G-CGACG--TTTGAATG-TTTCA-TC--AT-AT-A------T----ACTGAC-ATGA--CCCTTTCAAG-TGAG-ACGT-A-G-AT-AATTTTCATAG-G-CGT-AG
gi|18 : TTT-C-C-AAAATAAAA--GCA----CAATA--ATTC-A--TTGTC---GTT-T-A-TTTA-AAA-A---AGA-GT-CGTAA--ACT-AAT-GAT--A-AATT-TTAG---------------------TT---------GGAA--CC-----A-GC----------------T------A-------A-TCC-C---------C---A-CT-GCTG-CT-TATT-CAA-AGTA-GTCGACAC-TTTGA-TG-TTTCAGTC--AT-ATGA------CCTGTA--GAC-A-G---TGACTTCAAG-TGAG-ACGT-A-G-AT-AATTTCCA-gttactgtctttga
gi|19 : C---AGAGTTTATAAAGAG-TA--GA-----AGTATGT---------------CTT----CCATGTTGTTAACTT------GTAA---TAT---TTT-C-T---GTCATTTTATT--GAGGT--GAAATTAATAAAA--TG----A-CAACAT---T-------TT--------------------TC--------TTTTAAA--------------------------------ATA---A-AATATCAATTCTCC-C-AA--T-AAT--GCA--A-CATAA--ACTCAA-ATTGTC---GTTCT-A-TTTC-AAAGA---AGA--T-CG-Atagcgttaggactgtatttga
gi|2 : tccaattgggacagctcccggattttagACTACCTGTGGCGAAAA-A-----A------AA--CC--TTTAGTGTTTC---C-AATG---G--GTAA--AA---AACAATTTGACCCT--TTGT-GAAAAGGT-AC--ATT-----T--TTCCTCTCGCCCTGCAACTTGC----ATCAAACGTCTC-TCA--GAG-C-----GCTGGCA-AAA---CA---AAGCCACC-CCGA-TC-GGGG----CCGA----TCC-AGGATTT-GA-GGTTAG-A-GGGGGCCGC---AACTT--T----A-------TAAGACAAG-GGGGCT-GAGGGGAT
gi|2 : ttctgggagaaaaatggggaaaaactattcggatcgacacaccgtagcgtcgcctgattctaaactatttaccacccattgatttccggttattgacaaagaagttcaagaactgtttccTC---GTT-T-A-TTTC-TCA-G---ACA-GT-CG-AACAAAA-AAT-GAT-TA-GATA-TGAA-------------AATT----TTAGGGGGGGGGGGGC-AG-----C-ACCGAGTATGCCTCCTCTA------A-------A-TTCAC---------C---A-CT-GCCG-AT-CAAT-CAA-AGTA-G-CACCGG-TTTGA-TG-TTTCA-AC--AG-AT-A------catagggctgaattcgtttatttctcagacagtcgaacaaaaaatgattagatatgaaaattttaggggggggggggcagcaccgagtatgcctcctctaaattcaccactgccgatcaatcaaagtagcaccggtttgatgtttcaacagatannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngccagcgtttgcaatgacaattannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntcagttataaataattatatgtagcattttccagagttcggcaa
gi|20 : ttctgggagaaaaatggggaaaaactattcggatcgacacaccgtagcgtcgcctgattctaaactatttaccacccattgatttccggttattgacaaagaagttcaagaactgtttccactacctgtggcgaaaaaaaacctttagtgtttccaatgggtaaaaaacaatttgaccctttgtgaaaaggtacatttttcctctcgccctgcaacttgcatcaaacgtctctcagagcgctggcaaaacaaagccaccccgatcggggccgatccaggatttgaggttagagggggccgcaactttataagacaagggggctgaggggatcatagggctgaatACTGCTTG-GGTGAAAA-A-----ACCCCAAAA--GCACT-----GTTTC---C-ATTG---G--GTAG--AT---GATAATTTGAATAA--TTGT-GAAA-GGC-ATCAATT-----TTCT--------CCCAAAGACTT-C----GTTAAA-------------------------------GA---CA---AAGGCACT-TCGA-TCAGGGG----CGGA----TGT-AGAATTT-G--GGT---------GG-CAC---ATCTT--T----A-------Tnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngccagcgtttgcaatgacaattannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntcagttataaataattatatgtagcattttccagagttcggcaa
gi|21 : accagcgatcgactaccggttatagacgaagcagcattctATTCT-C-C-AA--TAAA---GCA--A---------TTC-A-ATTGTC---GTT-T-ACTTTC-AAA-A---AGA-GT-CT-AA--ACT-AAT-GAT-----------AA-------------ACTT----TTA--------------GG-----T-GC-----------------------G-------A-CCCGCTTAGAATTAC---A-CT-G-CG-AT-C-TT-CAA-AGTA-G-CGACGG-TTTGA-TG-TT-TA-TC--AT-AT-A------C----A--GAC--TG----ACTTT--AG-TGAGAACGT-A-GAAT-AAt
gi|22 : TAT-AGGT--GAACTTAATAAAA--CGA-C-A-CGAAAT---TTAATA-GTT--------------------TTTTTTTTTTTTTTTAATTA--TTT------------ATCAATTTTGGAATAAATA-A---TAAATTCT-C-C-AAA-TAAAAA-GCA--A-CAATA--ATTC-A-ATgtaagtccatagttggactgtctttta
gi|22 : G-AT-CATT-CAA--GTA-G-CGCCGGTTTTAA-TG-TTTCA-TC--AG-AT-A------aggggacaaccgactgcgaaaccccgctaagatcattcaagtagcgccggttttaatgtttcatcagata
gi|23 : tataggtgaacttaataaaacgacacgaaatttaatagtttttttttttttttttaattatttatcaattttggaataaataataaattctccaaataaaaagcaacaataattcaataggggacaaccgactgcgaaaccccgctaaC-CCGA-TCAGGCG----CGGA----TCC-ATGATTT-GA-GGTTAC-A-GGGGA-CAA---AACTT--C----A-------TGAGG
gi|24 : TT-CAA-AGTACG-CGCAGG-TT-GA-TG-TTCCG--------------------------------G---TCCTTTCAAACTGAG-GCGTTA-G-AA-AATTTCCA-AATA-CGTCAGCgaagaggtctgacnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnttgatgaggtgaaattaatgaaa
gi|25 : T--TTGT-GA--GGG--AT--ATT-----CTTTTACT--------ACGGCTTGC----ATCAA--TTTTAATCATCGAG-T-TCTTGGTCA-ACAAAGCTCACTTAAGCCACC-TCGAATGAGGTGAAGGCGGGATTTTCT-AGGATTT-GA-GGTTTA-A-GGGGG--AC---AACTTAGG----A-------TGAGTCGCAAGGGG---Gatggtcagtgacaattannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnagtatatgtaacattttccacaga
gi|26 : tttaggca-----GTTTC---T-ACTGCCTGTTATAA--AT---AACAATTTGTCCAT--ATGT-GAAAGGGC-AT--TTT-----TTCTTCCTCTAGCCTGGCGACTTGC----ATCAA--TTCTC-TCA--GAG-AGT--TGATGA-A-AGA---CA---AGTCCACC-CCGA-TCAGGCG----CGGA----TCC-ATGATTT-GA-GGTTAC-A-GGGGA-CAA---AACTT--C----A-------TGAGGtctcgagggaataat
gi|27 : TTCT-C-A-AA--TAAA----CC--A-CAATA--A-TC-A--TAGTC---GTT-T-A-TTTCGAAA-A---AGA-GT-CTTAA--ACT-AAT-GATGTA-------------------------TT----TTAGGTGCGAAACC----------C-GCT---------------A------A-------A-TCCAC---------C---A-CT-GCCGGAT-CATT-CAAGAGTA-G-CGACAG-TTTGA-TG-TTTCA-TC--AATAT-A------C----A--GAC-ATGGGATCCTTTCAAG-TGA--ACGT-gaagagg
gi|29 : atTT------TCAA---TAT---TTT-C-T---TTCACTTTTTTATGAGGT--GAAACTGATGAAA--TGA-C-A-CTAAGT---TTAAGG-ATT--------------------TC--------T-------TG--GGG------------G--A--------------A-AATAT-GATTTG-C-A-AA--TATAA--GTA--A-CTAGA--AACC-A-A
gi|3 : tcaagggccgaagctcctggaatttacagatattataaggtttgaaACTGACTGTGGCGAATT-A-----A------TA--TT--T-----GTTTC---C-ACTG---G--GTAA--AT---AATAATTTGACCCT--TTGT-GAAAGGGC-AT--GCT-----TTCTTTTTCTAGCCCGGCGAATAGC----ATCAAACCTCTC-TCA--GAG-A----TGATAA-A-AAA---CA---AAGCCACC-CCGA-TCAGGCG----CGGA----TCC-AGGATTG-GA-GGTTAC-A-CGGGA-TAA---AACTT--C----A-------TGAGGCCCGCGGGG---GAGGGGGTG-GCAGCTCTC---AGATTTTATAA-GAG-TA--GA-----A---TGT---------------CTC----CTATGTAGT-A-TTT------TTAA---TAT---ATA-C-T---GTCATTTTTTTATGAGGC--GAAATTAATAAAA--CGA-C-A-CAAAAT---TTAAGA-GTT--------------------TT--------GTTTGGATTGTTGGGGGGGGGGGGGTTG--GG----GGGGTAAATA-ACTATACATTCT-C-C--A--TAAAA--GCA--A-CAATA--AATC-ATATTGTC---GTT-----TCTC-AAA-A---AGA-GT-CG-AA--ACT-ATT-GAT-TA-AATT-TGAA-------------ATTT----TTAGGGGGGGGGGGG--GG-----G-GC----------------A------A-------A-TCCGC---------C---A-CT-GCCG-AT-CATT-CAA-AGTA---CGCCGG-TTCGA-TG-GTCCA-TC--AG-AT-A------C----A--GAC-ATA---TACTTTCAAC-TGAG-ACGT-A-G-ATAAATTTCCA-AG-A-CGC-AGC
gi|30 : -C-C-AA--ATAAA--GCA--A-ACATA--ATTC-A-ATTTCC---GTT-T-A-TTTC-AAA-A---AGAAGT-CT-AA--ACT-GAT-GAT-TG-CAGT-T-AG-------------GTTT-------------GCGTAA--CC-----C-GCT---------------A------A-------A-ACCAC---------C---A-CTTGCCG-ATTCATTTCAA-AGTA-G--ACCAG-TTTGA-TG-T-CCA-TC--AG-AT-A------C----A--GAC-AT
gi|33 : ttaTCT-C-C-AAG-TAAAA--GCA--A-CAATA--ATTC-A-ATTGTC---TTT-T-C-TTTC-AAA-A---AGA-GT-AT-AA--ACT-AAT-TAT-TA-A-----------------------TT----TTA----GGTGCGAA--CC-----C-GCT---------------A------A-------A-TCCAC---------C---A-CT-GCCG-AT-CATT-CAA-AGTA-G-CGACGG-TCTGA-TG-TTCt
gi|34 : AAATA-TATAAAAATTCT-C---AA--TAATG--ATATTA--AATA--AATT-A-ATTGTC---GTT-T-A-TTTC-TCA-G---AGA-GT-TA-AA--ACA-AAT-TAT-T----TT----A-------------ATT--------GGGGAGGGGGGG--GG-----G-GC-------------------------------------T---------C---A-GT-GTCA-AT-CATT-TAA-A
gi|35 : AAATA-TATAAAAATTCT-C---AA--TAATG--ATATTA--AATA--AATT-A-ATTGTC---GTT-T-A-TTTC--TA-G---CGA-GT-TA-AA--ACA-AAT-TAT-T----TT----A-------------ATT---------GGGAGGGGGGG--GG-----G-GC-------------------------------------T---------C---A-GT-GTCA-AT-CATT-TAA-A
gi|36 : ACTATCTGTGGCAA--------------------------------TTTC---C-ACTG---G--GTAA--AT---AACAATTTTACCCT--TTGT-GAAAGGGC-GT--ATT-----TTCTTCCTTTAGCCCGACGACTTGC----ATCAAAC
gi|38 : cagttcgcaaaactggttct----TCT-AGGATTT-GACGGTTA--A-GGGG---AC---AACTT--TATGGA-------TGAGGCA--AGGGGTCTGAGGGAAT
gi|39 : agccacctcgaagtgtagatgaaggcgggactctt-------TGAGTCCTGCGGGGA--GAGGGAA---A--A-TCCT---AGATTTTACAA-GAG-TA--GA-----A----GTTGAAGAAGTTGACTACTC----CCATGTAGTCA-TTT------TTAA---TAT---TTT-C-T---aat
gi|4 : C-TCGA-ACAGGGG----CGGA----TCT-AGGATTT-GA-GTTTAT-A-GGGG
gi|4 : TTAATGAGGT--GAAATTAATAAAA--TGA-C-A-CAAAAT---TTATGA-GGT--------------------TT--------TTTTaactgaggggtctgtnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnttaatgaggtgaaattaataaaatgacacaaaatttatgaggttttttttttttaaatataaaggaattaatagtaacaaaaaagtcgaaaataattattttaatatataatgtgtagagggcgccgggtgcgcaccgtctaaatctgcagataattcaaagtagagctggtttgatatccaatcagatatacatgtaggcatgacctttc
gi|4 : ctcgaacaggggcggatctaggatttgagtttataggggaactgaggggtctgtnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnAA-A---AAA-GT-CG-AA--AAT-AAT-TAT-TTTAATA-TATA-------------ATGT----GTAGAGGGCGCCGGG--TG-----C-GC----------------A-----------------CCGT---------CTAAATCT-GCAG-AT-AATT-CAA-AGTA-G-AGCTGG-TTTGA-TA-TCCAA-TC--AG-AT-ATACATGT----A--GGC-ATG---ACCTTTCtttttaaatataaaggaattaatagtaacaaaaaagtcgaaaataattattttaatatataatgtgtagagggcgccgggtgcgcaccgtctaaatctgcagataattcaaagtagagctggtttgatatccaatcagatatacatgtaggcatgacctttc
gi|40 : ctcgaacaggggcggatctaggatttgagtttataggggaactgaggggtctgtnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnttaatgaggtgaaattaataaaatgacacaaaatttatgaggttttttttttttaaatataaaggaattaatagtaacTTTTTAATGAGGT--GAAATTGATAAGA--TGA-C-A-C-AATT---TTAAGA-ATT--------------------TT--------TT------------G------------G--AA---------AA--A-AATATAAGTTCTAA-C-AA--TA
gi|43 : tttcagtactctaa-----GTTTCAAAC-CCTG---G--G-AA--AT---GACAAGTTGACCCT--GTGTAAAAAGGGT-TT--ACT-----TATTTCCTCTCGCCC
gi|44 : -----A---TGT---------------CTC----CCATGTAGTCA-TTT------TCAA---TAT---TTT----------A-TTTTTTATAAGGT--GAAAATGATAAAC--TGA-C-A-CAtg
gi|45 : GA-TCAAGGA----CGAG----TCC-AGGATTT-GA-GATTAG-ATGCGGG-CGC---AACTT--T----A-------TAAGGC
gi|46 : acg-AATG-TGAA-------------TTTC----TTTGGGGGGGGGGGG--GG-----G-GC----------------A------A-------ATTTCG----------A---A-CT-GTAA-AT-AATT-TAA-Aagg
gi|5 : AAATTAT-CTC-AA--TAAAA--GTA--A-CAATA--CGTC-A-ATTAAC---GTT-T-A-ACTG-AGA-G---AGA-GT-CG-AA--AAT-AAT-GAT-TA-TATA-TGAA-------------AATT----GTAAGGGGGCGGGGGCAGG-----TTGC----------------G------C-------A-CCCCC---------T---A-------A-AT-CATT-CAA-AGTA-G-CGACGG-TTTGG-TG-TTCCA-TC--AG-AT-A------C----A--GTC-CTG---TTCTTTCAAC-CGAA-ACGT-A-G-AC-AATTTGCA-AA-A-C
gi|51 : aatttaaatttttttgaaaG-TGAG-ACGT-A-G-AT-AATTTCCA-aaacaacatttgcaatgacaattaannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncattatatgtagcattttccagagttcggcaacttgatacaactattttgccttacc
gi|6 : TTTTTATAAGGT--GAAATTGACAAA---TGAAC-A-CAAAAT---TTAAGAGGTTTTTAAATATTTATTTATTTATT--------TTTTGTTTTT--GG----------------------------AATAGAATATAAATTTT-C-C-AAA-TAAAA--GCA--A-CAATA--ATTC-A-ATTGTC---GTT-T-A-TTTC-AAN-N---NNN-NN-NN-NN--NNN-NNN-NNN-NN-NNNN-NNNNNNNNNNNNNNNNNATTTAAT-TTAGGGGGCACCGGG--TG-----C-GA----------------ACCGCTTA-------A-TCCTC---------C---A-CT-GCCG-AT-CATC-TAA-CGTA-G-CGCCGG-TCT-A-TG-TTCCA-TC--AC-AT-A------C----A--GAC-ATG---ACCTTTCAAG-TGAG-ACGT-A-G-AT-AGTTCCCA-taggactgtctttgaa
gi|7 : C---ACATTTTATAA-ATGCTA--GA-----AGTACGT---------------CCCTAAGCCATGCAGGCA-TTT------TAAA---CAT---TTTAC-T---GTC--TTTTCGATGAAGTTTAGAATT-ATAAAA--TGA-CAA-CAAAA---------A-ATT--------------------TT--------TCATGGttggtgtaggactgtctttg
gi|7 : tcaaaggtggagtccaggattttgattggtatagcacacaaacttaagagattctgaggccctcagaggaataagctccaagaagcttctgaatttgtaaA--TAAAATGACA--A-CAAAA--AAT-----TTTTCATGGTT-TGA-TTTC-AAA-AGAAAGACGT-GT-AA--ATTTAATTGTT-TA-AGTT-TGAA-------------AAATAGAGTAAAGGGGGAGGGGG--GA-----T-GCAACCTTCT--------A------A-------A-TCCGT---------C---A-tttgatttcaaaagaaagacgtgtaaatttaattgtttaagtttgaaaaatagagtaaagggggaggggggatgcaaccttctaaatccgtcaactactaaatcca
gi|8 : tcaaaggtggagtccaggattttgattggtatagcacacaaacttaagagattctgaggccctcagaggaataagctccaagaagcttctgaatttgtaacacattttataaatgctagaagtacgtccctaagccatgcaggcattttaaacattttactgtcttttcgatgaagtttagaattTTTATTAGGT--GAAATTAATAAAA--TGA-C-A-CAAAAT---TTAGAG-GTT--------------------TT--------Tactactaaatcca
gi|8 : AATA-AATATAAATTCT-C-A-AA--TAAAA--GCA--A-CAATA--ATTC-A-AT-GTC---GTT-T---TTTC-AAA-A----GA-GTTCT-AA--ACT-AAT-GAT-TA-A-----------------------TT----TTAGGGGGACACGGG---------T-GC----------------G------A-------A-CCCGCTAAATCAC-C---A-CTAGCCG-AT-TATT-CAA-AGTA-G-CGCGGG-TTTGA-TG-TTCCA-TC--AG-AT-A------C----A--GAC-ATG---ACCTTTCAAG-TGAA-ACGT-AGG-AT-AATTTCCATAG-GCCGT-AGaaaaaaaattatttatctatttatttttggaataaatataaattctcaaataaaagcaacaataattcaatgtcgttttttcaaaagagttctaaactaatgattaattttagggggacacgggtgcgaacccgctaaatcaccactagccgattattcaaagtagcgcgggtttgatgttccatcagatacagacatgacctttcaagtgaaacgtaggataatttccataggccgtagtactgtctt
gi|9 : tttattaggtgaaattaataaaatgacacaaaatttagaggtttttaaaaaaaattatttatctatttatttttggAATTCT-C-C-AAA-TAATA--GCA--ATCAATA--ATTC-A-ATTGTC---GTT-T-A-TTT--AAA-A---AGA-GTCCT-AA--ACT-AAT-GA--TA-AAT-------------------ATT---------------AGGTG--CG-----A-ACTCCCTT----------A------A-------A-TGCAC---------C---A-TT-GCCG-AT-CATT-CAA-AGTA-G-CGACGG-GTTGA-TGTTTTCA-TCATAT-AT-A------C----A--G-C-ATG---ACCT-------------CGT-A---AT-AATTTTCATAG-G-CGT-AGtactgtctt
10 sequences could not be aligned to this reference sequence:
Unaligned ( gi|28 ): GGAGGAAACTTCTCGTAATGCAGACAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGAAAATTAAAGAAAGGTTATCAGAAAACTGAAGGGGACATTACAAATTATAAGTCAGATGC
Unaligned ( gi|31 ): GGATTTCGGGAGAAAATACTCTACTCGATAAACCACGCCCGTTCCGTCACCTGTTCTAAATTTATTATTGGACCTATGGCGCTAGCCTGACTTTAGTCGAAGGCAGTTTGAGAACTGTTTCTACTGCCTGTGTCGAAGGGGAAAAGAAATTC
Unaligned ( gi|32 ): GATATATAATCTTTATAAAACTAAGAGGGGGCGCCGTGTGTAATTTATTAATTTTTTCAGTGAAAAATAAGATTATATATAATACACTTGGTAAATTTAAGGGGGGGGGGCGCCGGTGCGCCCACCCCTTAAATCCGCCACT
Unaligned ( gi|37 ): TATTTAAATGGGGGTTATAAACACAAGAAAATTAAGAAAGTAATAGAAAACTGAAGGAGGGGGATGCAATATTATGTTCATATGCAGAAAAATGTATACAAGGGGGGGGGGG
Unaligned ( gi|41 ): GGGGGAGAAATTGAGGAAAACCGGCCTCCACTCAGATCAACAAGCCATTCCGTCGCCTGGTTCTAAAGTTATTTACAAGCGATCG
Unaligned ( gi|42 ): CTGTCTTATGAAGAGGGGGGAGGGGGGCAAACTTCTAAACTATATGCGACACAATGAACCAGAAATTTGATG
Unaligned ( gi|47 ): AAGAGAGGTCCGCCGTGTGTAATTTAATTAATTTTTCCCAGTAAAAAAATTACAGATT
Unaligned ( gi|48 ): CTGTGACTTTGATGCAGAAGGGGGGGGGGGTAAACTTCTAAATTATGTGC
Unaligned ( gi|49 ): GCACAGAGTGGTATGGGGGAGAGACCTGTCAAACTTCTAGTATATGGA
Unaligned ( gi|50 ): AGTTCGAGAACCGTTTTACTGTCTGTGGCGATTTCGACTGGGTACA
Alignments
lowQualScore : 111111111111111111111111111111111111111111111111111111111111111111111111111111111111111 11111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 333333333333333333333333333333 11 11111 1111 111111 1111 222222222222222 1111 33333 111111111 666666666666666666666 3333333333333 22222222222 111111 1111 666666666666666666666666666666666666666666666666666666666666666666666666666666666666666 11 33333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333 1
lowQualScore : 444444444444444444444444444444 777 4 777 55 11 777 55 3 3 44 88 00000 11 7 2 9999 22 4 888 999 0 4 66 777 777 3 66 2 4444 666666 2 5 66 1111 66 555 333333333333333 1111 77777 999999999 1 888888888888888888888 0000000000000 6 22222222222 666666 2222 66 0 4 4 6 6 1 66 33 2 5 444 888888888888888888888888888888888888888888888888888888888888888888888888888888888888888 0 0 3 999 00 666 55 1 22 6 1 1 333 1 1 1 22 44 333 3 7777 22 222 1 44444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444 1 1 3 777777777 333 1 3 22 2 2 1 1 2 2 2 2 2 2 2 33 33 2 99999999999 33 0 444 6666 2 66 2 2 3 3 3 6 5
lowQualScore : .............................. ... . ... .. .. ... .. . . .. .. ..... .. . . .... .. . ... ... . . .. ... ... . .. . .... ...... . . .. .... .. ... ............... .... ..... ......... . ..................... ............. . ........... ...... .... .. . . . . . . .. .. . . ... ....................................................................................... . . . ... .. ... .. . .. . . . ... . . . .. .. ... . .... .. ... . ........................................................................................................ . . . ......... ... . . .. . . . . . . . . . . . .. .. . ........... .. . ... .... . .. . . . . . . .
lowQualScore : 999999999999999999999999999999 000 0 000 55 00 000 00 6 6 00 66 00000 55 9 9 4444 44 4 111 999 1 4 33 888 888 3 33 7 0000 000000 7 3 88 2222 44 444 777777777777777 3333 99999 888888888 4 000000000000000000000 3333333333333 7 66666666666 444444 1111 44 1 4 0 2 9 2 33 77 7 3 777 222222222222222222222222222222222222222222222222222222222222222222222222222222222222222 7 7 6 444 00 444 00 8 55 3 8 8 333 9 9 9 44 55 333 6 3333 66 555 9 44444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444 8 8 0 333333333 222 8 8 88 0 0 9 9 2 2 5 2 2 2 4 22 66 4 66666666666 77 6 444 0000 9 55 9 9 1 1 1 7 0
consensus : ACTGCCTGTGGCGAAGN-A-----A------AAN--C--T-----GTTTC---C-ACTG---G--GTAA--AT---AACAATTTGACCCT--TTG-T-GAAAGGGC-AT--ATT-----TTCTTCCTCTAGCCCGGCGACTTGC----ATCAAACTTCTC-TCA--GAGAG-TTGGTCAA-AG-A---CA---AAGCCACC-CCGA--T-CAGG----GGCGGA------TCC-AGGATTT-GA--GGTTA-NA-GGGGG-CACA---ACTT--C----A-------TGAGGCCCGCGGGG-----GAGGGGAT----AG--GCTCCCGGA---------------------TTTTA-CA----------AGAG-TAGA---AGT-----ATGT------CTC----CCATGTAGTC-ATTTTTAA-TATTTT-CTGTCATTTTTTTATGAGGT--GAAATTAATAAAA--TGA-C-AC---AAAATTTAAGAG--------------------TT-TT-T-------------------T----TT-TT----------------GGGAA-TAAATAAATATAAATTCT-C-C-AA--TAAAA--GCA--A-CAATA--ANTC-A-ATTGTC---GTT-T-A-TTTC-AAA--A---AGA-GT-CN-AA--ACT-AAT-GAT-T-A-----AAT-----TG--AA-------------ATTT----TTAGGGGGG---GGGG----GG-G-G---C-----GC----------------A------AA-TC-CGC---------C---A-CT-GCC--G-AT-CATT-CAA-AGTA-G-CGCCGG-TTTGA-TG-TTCCA-TC--AG-AT-A------C----A--GAC-A-TG---NCC-TTTCAAG-TGAG-ACGT-A-G-AT-AATTTCCATAGG-CGTAGC
Reference ( family-325 ) : ACTGCCTGTGGCGAAGN-A-----A------AAN--C--T-----GTTTC---C-ACTG---G--GTAA--AT---AACAATTTGACCCT--TTG-T-GAAAGGGC-AT--ATT-----TTCTTCCTCTAGCCCGGCGACTTGC----ATCAAACTTCTC-TCA--GAGNG-TTGGTCAA-AG-A---CA---AAGCCACC-CCGA--T-CAGG----GGCGGA------TCC-AGGATTT-GA--GGTTA-NA-GGGGG-CACA---ACTT--C----A-------TGAGGCNCGCGGGG-----GAGGGGAT----GG--GCTCCCAGA---------------------TTTTA-CA----------AGAG-TAGA---AGT-----ATGT------CTC----CCATGTAGTC-ATTTTTAA-TATTTT-CTGTCATTTTTTTATGAGGT--GAAATTAATAAAA--TGA-C-AC---AAAATTTAAGAG--------------------TT-TT-T-------------------T----TTGTTG--------------GGGGAAATAAATAAATATAAATTCT-C-C-AA--TAAAA--GCA--A-CAATA--ANTC-A-ATTGTC---GTT-T-A-TTTC-AAA--A---AGA-GT-CN-AA--ACT-AAT-GAT-T-A-----AAT----TTG--AA-------------ATTT----TTAGGGGGG---GGGG----GG-G-G---C-----GC----------------A------AA-TC-CGC---------C---A-CT-GCC--G-AT-CATT-CAA-AGTA-G-CGCCGG-TTTGA-TG-TTCCA-TC--AG-AT-A------C----A--GAC-A-TG---NCC-TTTCAAG-TGAG-ACGT-A-G-AT-AATTTCCA-AGG-CGTAGC
gi|1 : ACTGCTTTTGGTGAAGGGA-----A------AAT--A--T-----GATTC---C-ATTG---G--GTAA--AT---AACAACTTGACCCT--TTG-T-GAATGGGT-AT--ATT-----TTC--CCTCT--CCCTGTGGCTTGC----ATCAAACTTCTT-TCT--GAGAG-TT-GTC-A-AG-A---CG---AGGCTGCC-CCGA--T-CAGT----GGCGGA------TCC-AGGATTT-GA--GGTTA------GCG-CACA---ACTT--C----AGGAGATCTGAGTCCCTCAG---------AGGGCT----AG--GCTCCTTGA---------------------TTTTA-C-----------AGAT-TTTATTTA-T-----ATGT------CTC----TCACTTAATA-ATTTTTTA-TATTCT-CTGTCA--TTTTGATGAGAT--G-GACTGATAAAAATTGG-CAACAAAAAAAATTA--AG--------------------TT-TT-----------------------------CTG--------------GGGGAA--AAAT--ATATCAATTTT-C-CTAA--TAAAG--GTA--A-CAAGA--AATC-A-AATGTG---GTT-T-A-TTAC-AGA--G---AAA-GT-TG-AA------AAT-AAT-T-------AGT----TTG--AA-------------A--A----TAATGGGTG---AGGG----TG-T-G---C-----ACCCTCT-----------A------AA-TC-CGC---------C---A-CT-ACC--G-AT-CATT-CAA-AGTA-G-CGCCGG-TTTGA-TG-TTCCA-TC--AG-AT-A------C----A--GGG-A-TG---C----TGCAAC-TGAG-------------AATTTCCA-A
gi|10 : gggggggggctatactcggattaacacacgcctttccgtcattaaatttagtgaccagtgatcgatttcagactattgagaattgttttcactaactgtttctAAATTTCTC-TGA--GAATG-CTGGTCAA-AC-A---CA---AAACAACC-TTGA--C-CAGG----GGAGGA------TCC-AGGACTT-GA--TATTA-GA-GGAGC-GAAA---ATTT--T----A-------AGAGGCtaaggccagcgtttgcaacgacaattagnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngtaaaattctccagatttcaataacctgatgcaatcactattttgccc
gi|10 : TTTA-CA----------CGGT-TAAA---AGT-----ATAT------CTT----TCATGTGGTC-ATTTTTAA-TATTTT--TCTCATTTTTT------------GATT-------------C-AC---AAAATGTAACA----------------------T-TT-T-------------------T----TTA-----------------------------AAACATGAATTTT-TAT-GA--TCAAT--GTC--A-CAATA--AATC-A-AATGagggtgtctgtggtccctagagatttaaaataccgaaagcctcttgtaaagcatttacacggttaaaagtatatctttcatgtggtcatttttaatatttttctcattttttgattcacaaaatgtaacatttttttaaaacatgaatttttatgatcaatgtcacaataaatcaaatgatg
gi|11 : aaatttctctgagaatgctggtcaaacacaaaacaaccttgaccaggggaggatccaggacttgatattagaggagcgaaaattttaagaggcagggtgtctgtggtccctagagatttaaaataccgaaagcctcttgtaaagcaTGACGAAGC-AGTTCGA------AAA--C--T-----GTTTC---CTACTG---G--CCAGCCATGGCAACAATTAACCCCT--TTGTT-AAAAAGGCTAT--ATT-----TTC--CCTCTCGCCCTGCGGTTCAT----AT-AAACTTCTC-TC---GAGAA-TTAGTCAA-AGAA---CA---AAGCCACCTTCGA--T-CAGGC---GCCGGA------TCT-AGGATTT-AA--TGTTACGA-GGGGG-CACA---ACTT--C----atg
gi|12 : ccggtgatT--AAAATTAATACAT--TGA-C-AC---AAAAT------G--------------------TT-TT-T-------------------------------------------------GATAAAAAAATATAGATTCT-CAA-AA--TAAAA---TA--A-CAATA--AATC-A-ATCGTC---GTT-T-A-TTTC----------AGA-GT-CG-AA--AAT-AAT-AAT-CAA-----AAT----ATG--AA-------------ATTA----T------------AGG----TG-G-G---C-----GCAACCTTT---------A------AA-TC-TGC---------C---A-CT-ACC--G-GT-CATT-CAA-ATCA-G-CACTAG-TTTGA-TG-TTCCT-TC--AG-AT-A------C----A--GGC-C-TA---TCC-TTTTAAC-TGAG-ACGT-A-G-AC-AA-TTCCA-Acagggatcagatagcaagccacacctaaattgcttagttctacagtacaaaacactagcgatgaaa
gi|13 : TCT-C-C-AA--ATAAA--GCA--A-CAATA--ATTC-A-AT-GCA---GTT-T-A-TT-C-TAA--A---AGA-GT-CT-AA--A-T-AAT-GA----------AAT------------------------ATTT----T-------------------AG-G-G---CCTCCCGT----------------A------AA-TC-C-----------C---A-C-------G----CATT-CAA-AGTA-G-CA-CGG-TTT-A-CG-TTCAA-T------AT-A-----------A--GACAA-TG---ACC--TTCAA--TGAG-AC-----G-AT-AATTT-CA-AGG-aactcccaccggttgcaatgaaaatta
gi|14 : aACTGCTTGTGGCGAAGA-A-----A------AAATTC--T-----GTTTC---C-ACTG---G--GTAGATAT---AACAATTAGACCCTAAATG-T-GAAAGGGT-AT--Atcggactgcttttgagagaggggggaggggggaaacttctagtaatgcgacagcgcaaaaatcaaaagcctaatggaacactaaat
gi|15 : gagaaaattttaatcggataaacacagccgttccgtcgaatggtttttaatttatttaacaggaattttatatgctataaataaaagcaataaattttccttattggcatctaggctagcgaagactaaaacgtcgaagatgttcgagaactaattct--T-CAAA----GGTGGA------TCCCAGGATTTTGA--GGTTG-A---GCAC-CACA---ACTT--A----A-------GGAG
gi|15 : C-ATTTTAAAACATTTT-C-GTCATTTTCGGATGAGTTA-GAATTTAATAAAA--T-A-C-AC---AAAAatccagaggcctcagctacgggataacgcttccaagaagtgcttctgatattgtacacattttattaaagctaccgaaagtcaccaaagtccttaagagcatgaccagcgacattttaaaacattttcgtcattttcggatgagttagaatttaataaaatacacaaaaaaatt
gi|16 : tcaaaggtggatcccaggattttgaggttgagcaccacaacttaaggagatccagaggcctcagctacgggataacgcttccaagaagtgcttctgatattgtacacattttattaaagctaccgaaagtcaccaaagtccttaagagcatgaccagcgaACTACCTTTGGCAAAAT-A-----A------AAC--C--T-----GTTTC---C-ACTG---G--GTAA--AT---AACAATTTGACTCT--TTG-T-GAAAGGGC-ATA-ATTATATGTTCTTCCTCTAGCCCGGCGACCTGCAAGAATCAAACTTCTC-TCA--AAGAG-TTGATCAA-AG-A---AA---AAGTCACC-CCGA--T-CAGG----CGCGGA------TCC-AGGATTT-aaatt
gi|17 : ttttagatattgaagaagcaggccgagaaaaccaggttctatAATTCT-C-C-AAAATAAAAA-GCA--A-CAATATAATTC-A-ATTGTC---GTT-T-A-TTTT-CAA--A---AAA-GT-CT-AA--ACT-AAT-GAT---------------------AA-------------ATTT----T------AG---GTGC----GA-G-C---C-----GCTA--------------A------AA-TC-CAC---------C---A-CT-GCC--G-AT-CATT-CAA--GTA-G-CGACG--TTTGAATG-TTTCA-TC--AT-AT-A------T----ACTGAC-A-TG---ACCCTTTCAAG-TGAG-ACGT-A-G-AT-AATTTTCATAGG-CGTAG
gi|18 : TTT-C-C-AAAATAAAA--GCA----CAATA--ATTC-A--TTGTC---GTT-T-A-TTTA-AAA--A---AGA-GT-CGTAA--ACT-AAT-GAT---A-----AAT----TTT--AG---------------------TT------------------GG-A-A---CCA---GC----------------T------AA-TC-C-C---------C---A-CT-GCT--G-CT-TATT-CAA-AGTA-GTCGACAC-TTTGA-TG-TTTCAGTC--AT-ATGA------CCTGTA--GAC-AGTG---AC---TTCAAG-TGAG-ACGT-A-G-AT-AATTTCCA-TAG-CGTgttactgtctttga
gi|19 : GGGAC----AG---CTCCCGGA---------------------TTTTAGCAGAGTTTATAAAGAG-TAGA---AGT-----ATGT------CTT----CCATGTTGTTAACTTGTAA-TATTTT-CTGTCATTTTAT--TGAGGT--GAAATTAATAAAA--TG----AC---AACATTT-------------------------TT-CT-T-------------------T----T----------------------AAAATA---AAATATCAATTCTCC-C-AA--T-AAT--GCA--A-CATAA--ACTCAA-ATTGTC---GTTCT-A-TTTC-AAAG-A---AGA--T-CG-Ataggactgtatttga
gi|2 : tccaattACTACCTGTGGCGAAAA-A-----A------AAC--C--TTTAGTGTTTC---C-AATG---G--GTAA--AA---AACAATTTGACCCT--TTG-T-GAAAAGGT-AC--ATT-----T--TTCCTCTCGCCCTGCAACTTGC----ATCAAACGTCTC-TCA--GAGCG-CTGG-CAA-A--A---CA---AAGCCACC-CCGA--T-C-GG----GGCCGA------TCC-AGGATTT-GA--GGTTA-GA-GGGGGCCGCA---ACTT--T----A-------TAAGACAAG-GGGGCT---GAGGGGATCATAGG--GCT
gi|2 : ttctgggagaaaaatggggaaaaactattcggatcgacacaccgtagcgtcgcctgattctaaactatttaccacccattgatttccggttattgacaaagaagttcaagaactgtttccTC---GTT-T-A-TTTC-TCA--G---ACA-GT-CG-AACAAAA-AAT-GAT-T-A-----GAT----ATG--AA-------------AATT----TTAGGGGGG---GGGG----GGCA-G---C-----ACCGAGTATGCCTCCTCTA------AA-TT-CAC---------C---A-CT-GCC--G-AT-CAAT-CAA-AGTA-G-CACCGG-TTTGA-TG-TTTCA-AC--AG-AT-A------gaattcgtttatttctcagacagtcgaacaaaaaatgattagatatgaaaattttaggggggggggggcagcaccgagtatgcctcctctaaattcaccactgccgatcaatcaaagtagcaccggtttgatgtttcaacagatannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngccagcgtttgcaatgacaattannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntcagttataaataattatatgtagcattttccagagttcggcaa
gi|20 : ttctgggagaaaaatggggaaaaactattcggatcgacacaccgtagcgtcgcctgattctaaactatttaccacccattgatttccggttattgacaaagaagttcaagaactgtttccactacctgtggcgaaaaaaaacctttagtgtttccaatgggtaaaaaacaatttgaccctttgtgaaaaggtacatttttcctctcgccctgcaacttgcatcaaacgtctctcagagcgctggcaaaacaaagccaccccgatcggggccgatccaggatttgaggttagagggggccgcaactttataagacaagggggctgaggggatcatagggctgaatACTGCTTG-GGTGAAAA-A-----ACCCCAAAAG--CACT-----GTTTC---C-ATTG---G--GTAG--AT---GATAATTTGAATAA--TTG-T-GAAA-GGC-ATCAATT-----TTCT--------CCCAAAGACTT-C----GTTAAA----------------------------G-A---CA---AAGGCACT-TCGA--T-CAGG----GGCGGA------TGT-AGAATTT-G---GGT---------GG-CACA---TCTT--T----A-------Tnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngccagcgtttgcaatgacaattannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntcagttataaataattatatgtagcattttccagagttcggcaa
gi|21 : accagcgatcgactaccggttatagacgaagcagcattctATTCT-C-C-AA--TAAA---GCA--A---------TTC-A-ATTGTC---GTT-T-ACTTTC-AAA--A---AGA-GT-CT-AA--ACT-AAT-GAT---------------------AA-------------ACTT----TTA-----------------GG-T-G---C-----G-------------------------A-CC-CGCTTAGAATTAC---A-CT-G-C--G-AT-C-TT-CAA-AGTA-G-CGACGG-TTTGA-TG-TT-TA-TC--AT-AT-A------C----A--GAC---TG---ACT-TT---AG-TGAGAACGT-A-GAAT-AAt
gi|22 : TAT-AGGT--GAACTTAATAAAA--CGA-C-AC---GAAATTTAATAG--------------------TT-TT-TTTTTT--------------T----TTTTT----------------------TAATTATTTATCAATTTT-G-G-AA--TAAA----------TAATA--A------ATTCTC--------------C-AAATAA---AAA-GC-----A--AC--AAT-AAT-T-C-----AAT----------------------------------AGGGGAC---AACC----GA-CTG---C-----GA----------------A------AC-CC-CGC---------T---A-A-------G-AT-CATT-CAA--GTA-G-CGCCGGTTTTAA-TG-TTTCA-TC--AG-AT-A------gtaagtccatagttggactgtctttta
gi|23 : C-CCGA--T-CAGG----CGCGGA------TCC-ATGATTT-GA--GGTTA-CA-GGGGA-CAAA---ACTT--C----A-------TGAGG
gi|24 : TT-CAA-AGTACG-CGCAGG-TT-GA-TG-TTCCG---------------------------------G---TCC-TTTCAAACTGAG-GCGTTA-G-AA-AATTTCCA-Agaagaggtctgacnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnttgatgaggtgaaattaatgaaa
gi|25 : T--TTG-T-GA--GGG--AT--ATT-----CTTTTACT--------ACGGCTTGC----ATCAA--TTTTAATCATCGAGTTCTTGGTCAACAA-AGCTCACTTAAGCCACC-TCGAA-T-GAGGTGAAGGCGGGATTT--TCT-AGGATTT-GA--GGTTT-AA-GGGGG--ACA---ACTTAGG----A-------TGAGTCGCAAGGGGGTCTCGAGGGAAT----atacgtcagcatggtcagtgacaattannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnagtatatgtaacattttccacaga
gi|26 : tttaggca-----GTTTC---T-ACTGCCTGTTATAA--AT---AACAATTTGTCCAT--ATG-T-GAAAGGGC-AT--TTT-----TTCTTCCTCTAGCCTGGCGACTTGC----ATCAA--TTCTC-TCA--GAGAG-TTGATGAA-AG-A---CA---AGTCCACC-CCGA--T-CAGG----CGCGGA------TCC-ATGATTT-GA--GGTTA-CA-GGGGA-CAAA---ACTT--C----A-------TGAGGaat
gi|27 : TTCT-C-A-AA--TAAA----CC--A-CAATA--A-TC-A--TAGTC---GTT-T-A-TTTCGAAA--A---AGA-GT-CTTAA--ACT-AAT-GATGT-A----------------------------------TT----TTAGGTGCG---AAAC----C--------C-----GCT---------------A------AA-TC-CAC---------C---A-CT-GCC--GGAT-CATT-CAAGAGTA-G-CGACAG-TTTGA-TG-TTTCA-TC--AATAT-A------C----A--GAC-A-TGGGATCC-TTTCAAG-TGA--ACGT-gaagagg
gi|29 : atTTTCAA-TATTTT-CTTTCACTTTTTTATGAGGT--GAAACTGATGAAA--TGA-C-AC---TAAGTTTAAGGA--------------------TT-TC-----------------------------TTG--------------GGGGA-------AAATAT-GATTTG-C-A-AA--TATAA--GTA--A-CTAGA--AACC-A-A
gi|3 : tcaagggccgaagctcctggaatttacagatattataaggtttgaaACTGACTGTGGCGAATT-A-----A------TAT--T--T-----GTTTC---C-ACTG---G--GTAA--AT---AATAATTTGACCCT--TTG-T-GAAAGGGC-AT--GCT-----TTCTTTTTCTAGCCCGGCGAATAGC----ATCAAACCTCTC-TCA--GAGA---TGATAAA-AA-A---CA---AAGCCACC-CCGA--T-CAGG----CGCGGA------TCC-AGGATTG-GA--GGTTA-CA-CGGGA-TAAA---ACTT--C----A-------TGAGGCCCGCGGGG-----GAGGGGGT----GGCAGCTCTCAGA---------------------TTTTA-TA----------AGAG-TAGA-----------ATGT------CTC----CTATGTAGT--ATTTTTAA-TATATA-CTGTCATTTTTTTATGAGGC--GAAATTAATAAAA--CGA-C-AC---AAAATTTAAGAG--------------------TT-TTGT-------------------TTGGATTGTTGGGGGGGGGGGGGTTGGGGGGGTAAATAACTATACATTCT-C-C--A--TAAAA--GCA--A-CAATA--AATC-ATATTGTC---GTT-----TCTC-AAA--A---AGA-GT-CG-AA--ACT-ATT-GAT-T-A-----AAT----TTG--AA-------------ATTT----TTAGGGGGG---GGGG----GG-G-G---G-----GC----------------A------AA-TC-CGC---------C---A-CT-GCC--G-AT-CATT-CAA-AGTA---CGCCGG-TTCGA-TG-GTCCA-TC--AG-AT-A------C----A--GAC-A-TA---TAC-TTTCAAC-TGAG-ACGT-A-G-ATAAATTTCCA-AGA-CGCAGC
gi|30 : -C-C-AA--ATAAA--GCA--A-ACATA--ATTC-A-ATTTCC---GTT-T-A-TTTC-AAA--A---AGAAGT-CT-AA--ACT-GAT-GAT-T-G-----CAG----TT---AG-------------GTTT----------------GCGT----AA-C-C---C-----GCT---------------A------AA-AC-CAC---------C---A-CTTGCC--G-ATTCATTTCAA-AGTA-G--ACCAG-TTTGA-TG-T-CCA-TC--AG-AT-A------C----A--GAC-A-T
gi|32 : ttaA-GT-GA-AA--AAT-AA--GAT-T-ATATATAATACACTTGGTAA-------------ATTT----A-AGGGGGG---GGGGCGCCGG-T-G---C-----GCCCACCCCTT-------A------AA-TC-CGC---------C---A-CT-t
gi|33 : gatatataatctttataaaactaagagggggcgccgtgtgtaatttattaattttttcTCT-C-C-AAG-TAAAA--GCA--A-CAATA--ATTC-A-ATTGTC---TTT-T-C-TTTC-AAA--A---AGA-GT-AT-AA--ACT-AAT-TAT-T-A-----A----------------------------TT----TTA----GG---TGCG----AA-C-C---C-----GCT---------------A------AA-TC-CAC---------C---A-CT-GCC--G-AT-CATT-CAA-AGTA-G-CGACGG-TCTGA-TG-TTC
gi|34 : AAATATATAAAAATTCT-C---AA--TAATG--ATATTA--AATA--AATT-A-ATTGTC---GTT-T-A-TTTC-TCA--G---AGA-GT-TA-AA--ACA-AAT-TAT-T---------T----T-----A-------------ATT--------GGGGAG---GGGG----GG-G-G---G-----GC-------------------------------T---------C---A-GT-GTC--A-AT-CATT-TAA-A
gi|35 : AAATATATAAAAATTCT-C---AA--TAATG--ATATTA--AATA--AATT-A-ATTGTC---GTT-T-A-TTTC--TA--G---CGA-GT-TA-AA--AC--AA---AT-T--------AT----TTT--AA---------------------TTGGGAGGG---GGGG----GG-G-G---C--------------------------------------T---------C---A-GT-GTC--A-AT-CATT-TAA-A
gi|36 : ACTATCTGTGGCAA--------------------------------TTTC---C-ACTG---G--GTAA--AT---AACAATTTTACCCT--TTG-T-GAAAGGGC-GT--ATT-----TTCTTCCTTTAGCCCGACGACTTGC----ATCAAAC
gi|38 : cagttcgcaaaactggttctAGCCACC-TCGAAGTGTAGATGAAGGCGGGACTCTTTCT-AGGATTT-GAC-GGTTA--A-GGGG---ACA---ACTT--TATGGA-------TGAGGCA--AGGGGTCT--GAGGGAAT----
gi|39 : -------TGAGTCCTGCGGGGA----GAGGGAA---------AATCCTAGA---------------------TTTTA-CA----------AGAG-TAGA---AGTTGAAGAAGTTGACTACTC----CCATGTAGTC-ATTTTTAA-TATTTT-CTaat
gi|4 : C-TCGA--A-CAGG----GGCGGA------TCT-AGGATTT-GA--GTTTA-TA-GGGG
gi|4 : TTAATGAGGT--GAAATTAATAAAA--TGA-C-AC---AAAATTTATGAGG-------------------TT-TT-T-------------------T----TTTTT--------------------------TAAATATAAA--------------GGAA--TTA--A-TAGTA--A--------------------------C-AAA--A---A-A-GT-CG-AA--AAT-AAT-TAT-T-TT----AAT----ATA--TA-------------ATGT----GTAGAGGGC---GCCG----GG-T-G---C-----GC----------------A----------C-CGT---------CTAAATCT-GCA--G-AT-AATT-CAA-AGTA-G-AGCTGG-TTTGA-TA-TCCAA-TC--AG-AT-ATACATGT----A--GGC-A-TG---ACC-TTTCaactgaggggtctgtnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnttaatgaggtgaaattaataaaatgacacaaaatttatgaggttttttttttttaaatataaaggaattaatagtaacaaaaaagtcgaaaataattattttaatatataatgtgtagagggcgccgggtgcgcaccgtctaaatctgcagataattcaaagtagagctggtttgatatccaatcagatatacatgtaggcatgacctttc
gi|40 : ctcgaacaggggcggatctaggatttgagtttataggggaactgaggggtctgtnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnTTTTTAATGAGGT--GAAATTGATAAGA--TGA-C-AC----AATTTTAAGAA--------------------TT-TT-T-------------------T-------------------------GGAAAA-----AAATATAAGTTCTAA-C-AA--TA
gi|43 : tttcagtactctaa-----GTTTCAAAC-CCTG---G--G-AA--AT---GACAAGTTGACCCT--GTG-TAAAAAGGGT-TT--ACT-----TATTTCCTCTCGCCC
gi|44 : -----ATGT------CTC----CCATGTAGTC-ATTTTCAA-TATTTT------A-TTTTTTATAAGGT--GAAAATGATAAAC--TGA-C-AC---Atg
gi|45 : GA--T-CAAG----GACGAG------TCC-AGGATTT-GA--GATTA-GATGCGGG-CGCA---ACTT--T----A-------TAAGGC
gi|46 : acg-----AAT----GTG--AA-------------TTTC----TTTGGGGGG---GGGG----GG-G-G---G-----GC----------------A------AATTT-CG----------A---A-CT-GTA--A-AT-AATT-TAA-Aagg
gi|47 : T-CTGTAATTTTTTTACTGGGA--AAAATTAATTAAA--TTA-C-AC---A
gi|5 : aagagaggtccgccgAAATTAT-CTC-AA--TAAAA--GTA--A-CAATA--CGTC-A-ATTAAC---GTT-T-A-ACTG-AGA--G---AGA-GT-CG-AA--AAT-AAT-GAT-T-A-----TAT----ATG--AA-------------AATT----GTAAGGGGG---CGGG----GG--------------C----------------A------GG-TTGCGC-------------A-CC-CCCTAA-AT-CATT-CAA-AGTA-G-CGACGG-TTTGG-TG-TTCCA-TC--AG-AT-A------C----A--GTC-C-TG---TTC-TTTCAAC-CGAA-ACGT-A-G-AC-AATTTGCA-Att
gi|51 : aatttaaatttttttgaaaG-TGAG-ACGT-A-G-AT-AATTTCCATAGG-aacaaacaacatttgcaatgacaattaannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncattatatgtagcattttccagagttcggcaacttgatacaactattttgccttacc
gi|6 : TTTTTATAAGGT--GAAATTGACAAA---TGAAC-AC---AAAATTTAAGAGGTTTTTAAATATTTATTTATTTATT-T-------------------T----TTGTTT--------------TTGGAA-TAGA---ATATAAATTTT-C-C-AAA-TAAAA--GCA--A-CAATA--ATTC-A-ATTGTC---GTT-T-A-TTTC-AAN--N---NNN-NN-NN-NN--NNN-NNN-NNN-N-N-----NNN----NNN--NNNNNNNNNNNNNNNATTTAAT-TTAGGGGGC---ACCG----GG-T-G---C-----GA----------------ACCGCTTAA-TC-CTC---------C---A-CT-GCC--G-AT-CATC-TAA-CGTA-G-CGCCGG-TCT-A-TG-TTCCA-TC--AC-AT-A------C----A--GAC-A-TG---ACC-TTTCAAG-TGAG-ACGT-A-G-AT-AGTTCCCATTGG-TGTAGactgtctttgaa
gi|7 : --T-CAAA----GGTGGAG-----TCC-AGGATTTTGATTGGT-A-TA-G-----CACACAAACTT--A----AGAGATTCTGAGGCCCTCAGAG-----GA----AT----AA--GCTCCAAGAAGCTTCTGAATTTGTAACACATTTTA-TA----------AATGCTAGA---AGT-----ACGT------CCCTAAGCCATGCAGGC-ATTTTAAA-CATTTTACTGTC--TTTTCGATGAAGTTTAGAATTA-TAAAA--TGA-CAAC---AAAAgactgtctttg
gi|7 : A--TAAAATGACA--A-CAAAA--AAT-----TTTTCATGGTT-TGA-TTTC-AAA--AGAAAGACGT-GT-AA--ATTTAATTGTT-T-A-----AGT----TTG--AA-------------AAATAGAGTAAAGGGGG---AGGG----GG-G-A---T-----GCAACCTTCT--------A------AA-TC-CGT---------C---A-aatttttcatggtttgatttcaaaagaaagacgtgtaaatttaattgtttaagtttgaaaaatagagtaaagggggaggggggatgcaaccttctaaatccgtcaactactaaatcca
gi|8 : tcaaaggtggagtccaggattttgattggtatagcacacaaacttaagagattctgaggccctcagaggaataagctccaagaagcttctgaatttgtaacacattttataaatgctagaagtacgtccctaagccatgcaggcattttaaacattttactgtcttttcgatgaagtttagaattTTTATTAGGT--GAAATTAATAAAA--TGA-C-AC---AAAATTTAGAGG--------------------TT-TT-TAAAAAAAATTATTTATCTAT----TTATTT--------------TTGGAA-----TAAATATAAATTCT-C-A-AA--TAAAA--GCA--A-CAATA--ATTC-A-AT-GTC---GTT-T---TTTC-AAA--A----GA-GTTCT-AA--ACT-AAT-GAT-T-A-----A----------------------------TT----TTAGGGGGACACGGGT----GC-G-AACCC-----GCT---------------A------AA-TC--AC---------C---A-CTAGCC--G-AT-TATT-CAA-AGTA-G-CGCGGG-TTTGA-TG-TTCCA-TC--AG-AT-A------C----A--GAC-A-TG---ACC-TTTCAAG-TGAA-ACGT-AGG-AT-AATTTCCATAGGCCGTAGactactaaatcca
gi|9 : AATTCT-C-C-AAA-TAATA--GCA--ATCAATA--ATTC-A-ATTGTC---GTT-T-A-TTT--AAA--A---AGA-GT-CCTAA--ACT-AAT-GAT---A-----AAT------------------------ATT-------------A---GGTG----CG-A-A---C-----TCCCTT------------A------AA-TG-CAC---------C---A-TT-GCC--G-AT-CATT-CAA-AGTA-G-CGACGG-GTTGA-TGTTTTCA-TCATAT-AT-A------C----A--G-C-A-TG---ACC-T-------------CGT-A---AT-AATTTTCATAGG-CGTAGtactgtctt
8 sequences could not be aligned to this reference sequence:
Unaligned ( gi|28 ): GGAGGAAACTTCTCGTAATGCAGACAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGAAAATTAAAGAAAGGTTATCAGAAAACTGAAGGGGACATTACAAATTATAAGTCAGATGC
Unaligned ( gi|31 ): GGATTTCGGGAGAAAATACTCTACTCGATAAACCACGCCCGTTCCGTCACCTGTTCTAAATTTATTATTGGACCTATGGCGCTAGCCTGACTTTAGTCGAAGGCAGTTTGAGAACTGTTTCTACTGCCTGTGTCGAAGGGGAAAAGAAATTC
Unaligned ( gi|37 ): TATTTAAATGGGGGTTATAAACACAAGAAAATTAAGAAAGTAATAGAAAACTGAAGGAGGGGGATGCAATATTATGTTCATATGCAGAAAAATGTATACAAGGGGGGGGGGG
Unaligned ( gi|41 ): GGGGGAGAAATTGAGGAAAACCGGCCTCCACTCAGATCAACAAGCCATTCCGTCGCCTGGTTCTAAAGTTATTTACAAGCGATCG
Unaligned ( gi|42 ): CTGTCTTATGAAGAGGGGGGAGGGGGGCAAACTTCTAAACTATATGCGACACAATGAACCAGAAATTTGATG
Unaligned ( gi|48 ): CTGTGACTTTGATGCAGAAGGGGGGGGGGGTAAACTTCTAAATTATGTGC
Unaligned ( gi|49 ): GCACAGAGTGGTATGGGGGAGAGACCTGTCAAACTTCTAGTATATGGA
Unaligned ( gi|50 ): AGTTCGAGAACCGTTTTACTGTCTGTGGCGATTTCGACTGGGTACA
Alignments
lowQualScore : 111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111 1111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 333333333333333333333333333333 11 11111 1111 111111 1111 222222222222222 33333 1111 555555555555555555555 3333333333 22222222222 111111 11111 333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333 11 3333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333
lowQualScore : 444444444444444444444444444444 777 4 777 55 11 777 55 3 3 44 88 00000 0 7 2 9999 3 4 0 7777 4 66 777 777 3 66 2 4444 666666 2 5 66 1111 66 555 333333333333333 66 77777 5555 44 666666666666666666666 5 0000000000 66 22222222222 444444 00000 777 0 4 4 6 6 1 66 33 2 8 444 6666 111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111 1 0 3 999 00 44 55 1 22 6 1 1 2 2 33 44 2 2 77 22 3333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333 1 1 2 777777777 333 1 3 22 2 2 1 1 2 2 2 2 2 2 2 33 33 2 99999999999 33 0 444 6666 2 66 2 2 3 3 3 555 5 5
lowQualScore : .............................. ... . ... .. .. ... .. . . .. .. ..... . . . .... . . . .... . .. ... ... . .. . .... ...... . . .. .... .. ... ............... .. ..... .... .. ..................... . .......... .. ........... ...... ..... ... . . . . . . .. .. . . ... .... ................................................................................................ . . . ... .. .. .. . .. . . . . . .. .. . . .. .. .............................................................................................. . . . ......... ... . . .. . . . . . . . . . . . .. .. . ........... .. . ... .... . .. . . . . . ... . .
lowQualScore : 999999999999999999999999999999 000 0 000 55 00 000 00 6 6 00 66 00000 8 1 5 4444 4 4 1 9999 4 33 888 888 3 33 7 0000 000000 7 3 88 2222 44 444 777777777777777 00 99999 3333 33 777777777777777777777 7 7777777777 44 66666666666 444444 99999 555 1 4 0 2 9 2 33 77 7 0 777 1111 111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111 0 1 6 888 55 55 22 9 66 6 9 9 0 0 00 88 0 0 77 99 7777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777 9 9 5 666666666 333 9 8 88 0 0 9 9 2 2 5 2 2 2 4 22 66 4 66666666666 77 6 444 0000 9 55 9 9 1 1 1 444 0 7
consensus : ACTGCCTGTGGCGAAGN-A-----A------AAN--C--T-----GTTTC---C-ACTG---G--GTAA--AT---AACAATTTGACCCT--TTG-T-GAAAGGGC-AT--ATT-----TTCTTCCTCTAGCCCGGCGACTTGC----ATCAAACTTCTC-TCAGAGAGTT---GGTCAA-AG-A---CA---AAGCCACC-CCGA--T-CAGG----GGCGGA------TCC-AGGATTT-GA--GGTTA-NA-GGGGG-CACA---ACTT--C----A-------TGAGGCCCGCGGGG-----GAGGGGATAG--GCTCCCGGA---------------------TTTTA-CA----------AGAG-TAGA---AGT-----ATGT------CTC----CCATGTAGTC-ATTTTTAA-TATTTT-CTGTCATTTTTTTATGAGGT--GAAATTAATAAAA--TGA-C-AC---AAAA----TTTAAGAG--TTTT-----------------T-----------------------TTT------TT--------------------G-----GGGATAAATAAATATAAATTCT-C-C-AA--TAAAA-GCA--A-CAATA--ANTC-A-ATTGTCGTT-TA-TTTC-AAA--AAGA-GT-CN-AA--ACTAATGAT-T-A-AA-T-TGAA--------------ATTT---TTAGGGGGG---GGGG----GG-G-G-----C--GC----------------A------AA-TC-CGC---------C---A-CT-GCC--G-AT-CATT-CAA-AGTA-G-CGCCGG-TTTGA-TG-TTCCA-TC--AG-AT-A------C----A--GAC-A-TG---NCC-TTTCAAG-TGAG-ACG-TA-G-AT-AATT---TCCATAGG-CGT-AGC
Reference ( family-325 ) : ACTGCCTGTGGCGAAGN-A-----A------AAN--C--T-----GTTTC---C-ACTG---G--GTAA--AT---AACAATTTGACCCT--TTG-T-GAAAGGGC-AT--ATT-----TTCTTCCTCTAGCCCGGCGACTTGC----ATCAAACTTCTC-TCAGAGAGTT---GGTCAA-AG-A---CA---AAGCCACC-CCGA--T-CAGG----GGCGGA------TCC-AGGATTT-GA--GGTTA-NA-GGGGG-CACA---ACTT--C----A-------TGAGGCCCGCGGGG-----GAGGGGATAG--GCTCCCGGA---------------------TTTTA-CA----------AGAG-TAGA---AGT-----ATGT------CTC----CCATGTAGTC-ATTTTTAA-TATTTT-CTGTCATTTTTTTATGAGGT--GAAATTAATAAAA--TGA-C-AC---AAAA----TTTAAGAG--TTTT-----------------T-----------------------TTT------TT--------------------G-----GGAATAAATAAATATAAATTCT-C-C-AA--TAAAA-GCA--A-CAATA--ANTC-A-ATTGTCGTT-TA-TTTC-AAA--AAGA-GT-CN-AA--ACTAATGAT-T-A-AA-T-TGAA--------------ATTT---TTAGGGGGG---GGGG----GG-G-G-----C--GC----------------A------AA-TC-CGC---------C---A-CT-GCC--G-AT-CATT-CAA-AGTA-G-CGCCGG-TTTGA-TG-TTCCA-TC--AG-AT-A------C----A--GAC-A-TG---NCC-TTTCAAG-TGAG-ACG-TA-G-AT-AATT---TCCATAGG-CGT-AGC
gi|1 : ACTGCTTTTGGTGAAGGGA-----A------AAT--A--T-----GATTC---C-ATTG---G--GTAA--AT---AACAACTTGACCCT--TTG-T-GAATGGGT-AT--ATT-----TTC--CCTCT--CCCTGTGGCTTGC----ATCAAACTTCTT-TCTGAGAGTT----GTC-A-AG-A---CG---AGGCTGCC-CCGA--T-CAGT----GGCGGA------TCC-AGGATTT-GA--GGTTA------GCG-CACA---ACTT--C----AGGAGATCTGAGTCCCTCAG---------AGGGCTAG--GCTCCTTGA---------------------TTTTA-C-----------AGAT-TTTATTTA-T-----ATGT------CTC----TCACTTAATA-ATTTTTTA-TATTCT-CTGTCA--TTTTGATGAGAT--G-GACTGATAAAAATTGG-CAACAAAAAAA----ATTAAG-------T-----------------T-----------------------TTC------TG--------------------G-----GGGAAAAAT--ATATCAATTTT-C-CTAA--TAAAG-GTA--A-CAAGA--AATC-A-AATGTGGTT-TA-TTAC-AGA--GAAA-GT-TG-AA-----AATAAT-T-A-GT-T-TGAA--------------A--A---TAATGGGTG---AGGG----TG-T-G-----C--ACCCTCT-----------A------AA-TC-CGC---------C---A-CT-ACC--G-AT-CATT-CAA-AGTA-G-CGCCGG-TTTGA-TG-TTCCA-TC--AG-AT-A------C----A--GGG-A-TG---C----TGCAAC-TGAG-------------AATT---TCCA
gi|10 : gggggggggctatactcggattaacacacgcctttccgtcattaaatttagtgaccagtgatcgatttcagactattgagaattgttttcactaactgtttctAAATTTCTC-TGAGAATGCT---GGTCAA-AC-A---CA---AAACAACC-TTGA--C-CAGG----GGAGGA------TCC-AGGACTT-GA--TATTA-GA-GGAGC-GAAA---ATTT--T----A-------AGAGGCataaggccagcgtttgcaacgacaattagnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngtaaaattctccagatttcaataacctgatgcaatcactattttgccc
gi|10 : TTTA-CA----------CGGT-TAAA---AGT-----ATAT------CTT----TCATGTGGTC-ATTTTTAA-TATTTT--TCTCATTTTTT------------GATT-------------C-AC---AAAA----TGTAACA------T-----------------T-----------------------TTT------TT--------------------A--------------AAACATGAATTTT-TAT-GA--TCAAT-GTC--A-CAATA--AATC-A-AATGagggtgtctgtggtccctagagatttaaaataccgaaagcctcttgtaaagcatttacacggttaaaagtatatctttcatgtggtcatttttaatatttttctcattttttgattcacaaaatgtaacatttttttaaaacatgaatttttatgatcaatgtcacaataaatcaaatgatg
gi|11 : aaatttctctgagaatgctggtcaaacacaaaacaaccttgaccaggggaggatccaggacttgatattagaggagcgaaaattttaagaggcagggtgtctgtggtccctagagatttaaaataccgaaagcctcttgtaaagcaTGACGAAGC-AGTTCGA------AAA--C--T-----GTTTC---CTACTG---G--CCAGCCATGGCAACAATTAACCCCT--TTGTT-AAAAAGGCTAT--ATT-----TTC--CCTCTCGCCCTGCGGTTCAT----AT-AAACTTCTC-TC-GAGAATT---AGTCAA-AGAA---CA---AAGCCACCTTCGA--T-CAGGC---GCCGGA------TCT-AGGATTT-AA--TGTTACGA-GGGGG-CACA---ACTT--C----atg
gi|12 : ccggtgatT--AAAATTAATACAT--TGA-C-AC---AAAA----T------G--TTTT-----------------T--------------------------------------------------------------GATAAAAAAATATAGATTCT-CAA-AA--TAAAA--TA--A-CAATA--AATC-A-ATCGTCGTT-TA-TTTC-------AGA-GT-CG-AA--AATAATAAT-CAA-AA-TATGAA--------------ATTA---T------------AGG----TG-G-G-----C--GCAACCTTT---------A------AA-TC-TGC---------C---A-CT-ACC--G-GT-CATT-CAA-ATCA-G-CACTAG-TTTGA-TG-TTCCT-TC--AG-AT-A------C----A--GGC-C-TA---TCC-TTTTAAC-TGAG-ACG-TA-G-AC-AATT---CCcagggatcagatagcaagccacacctaaattgcttagttctacagtacaaaacactagcgatgaaa
gi|13 : TCT-C-C-AA--ATAAA-GCA--A-CAATA--ATTC-A-A-TGCAGTT-TA--TTC-TAA--AAGA-GT-CT-AA--A-TAATG-----A-AA-T-------------------ATTT---T-------------------AG-G-GCCTCCC--GT----------------A------AA-TC---C---------C---A-C--G---------CATT-CAA-AGTA-G-CA-CGG-TTT-A-CG-TTCAA-T------AT-A-----------A--GACAA-TG---ACC--TTCAA--TGAG-AC-----G-AT-AATT---TCaaaactcccaccggttgcaatgaaaatta
gi|14 : aACTGCTTGTGGCGAAGA-A-----A------AAATTC--T-----GTTTC---C-ACTG---G--GTAGATAT---AACAATTAGACCCTAAATG-T-GAAAGGGT-AT--Aaaggtcggactgcttttgagagaggggggaggggggaaacttctagtaatgcgacagcgcaaaaatcaaaagcctaatggaacactaaat
gi|15 : gagaaaattttaatcggataaacacagccgttccgtcgaatggtttttaatttatttaacaggaattttatatgctataaataaaagcaataaattttccttattggcatctaggctagcgaagactaaaacgtcgaagatgttcgagaactaattct--T-CAAA----GGTGGA------TCCCAGGATTTTGA--GGTTG-A---GCAC-CACA---ACTT--A----A-------GGAGATCC
gi|15 : C-ATTTTAAAACATTTT-C-GTCATTTTCGGATGAGTTA-GAATTTAATAAAA--T-A-C-AC---AAAA----agaggcctcagctacgggataacgcttccaagaagtgcttctgatattgtacacattttattaaagctaccgaaagtcaccaaagtccttaagagcatgaccagcgacattttaaaacattttcgtcattttcggatgagttagaatttaataaaatacacaaaaaaatt
gi|16 : tcaaaggtggatcccaggattttgaggttgagcaccacaacttaaggagatccagaggcctcagctacgggataacgcttccaagaagtgcttctgatattgtacacattttattaaagctaccgaaagtcaccaaagtccttaagagcatgaccagcgaACTACCTTTGGCAAAAT-A-----A------AAC--C--T-----GTTTC---C-ACTG---G--GTAA--AT---AACAATTTGACTCT--TTG-T-GAAAGGGC-ATA-ATTATATGTTCTTCCTCTAGCCCGGCGACCTGCAAGAATCAAACTTCTC-TCAAAGAGTT---GATCAA-AG-A---AA---AAGTCACC-CCGA--T-CAGG----CGCGGA------TCC-AGGATTT-aaatt
gi|17 : ttttagatattgaagaagcaggccgagaaaaccaggttctatAATTCT-C-C-AAAATAAAAAGCA--A-CAATATAATTC-A-ATTGTCGTT-TA-TTTT-CAA--AAAA-GT-CT-AA--ACTAATGAT------------AA--------------ATTT---T------AG---GTGC----GA-G-C-----C--GCTA--------------A------AA-TC-CAC---------C---A-CT-GCC--G-AT-CATT-CAA--GTA-G-CGACG--TTTGAATG-TTTCA-TC--AT-AT-A------T----ACTGAC-A-TG---ACCCTTTCAAG-TGAG-ACG-TA-G-AT-AATT---TTCATAGG-CGT-AG
gi|18 : TTT-C-C-AAAATAAAA-GCA----CAATA--ATTC-A--TTGTCGTT-TA-TTTA-AAA--AAGA-GT-CGTAA--ACTAATGAT------------AA--------------ATTT---T-----------AGTT----GG-A-A-----CCAGC----------------T------AA-TC-C-C---------C---A-CT-GCT--G-CT-TATT-CAA-AGTA-GTCGACAC-TTTGA-TG-TTTCAGTC--AT-ATGA------CCTGTA--GAC-AGTG---AC---TTCAAG-TGAG-ACG-TA-G-AT-AATT---TCCATA-G-CGT-gttactgtctttga
gi|19 : GGGACAG---CTCCCGGA---------------------TTTTAGCAGAGTTTATAAAGAG-TAGA---AGT-----ATGT------CTT----CCATGTTGTTAACTTGTAA-TATTTT-CTGTCATTTTAT--TGAGGT--GAAATTAATAAAA--TGA-CAAC---A-----------------TTTT-----------------T-----------------------CTT------TT--------------------------AAAATA---AAATATCAATTCTCC-C-AA--T-AAT-GCA--A-CATAA--ACTCAA-ATTGTCGTTCTA-TTTC-AAAG-AAGA--T-CG-Ataggactgtatttga
gi|2 : tccaattACTACCTGTGGCGAAAA-A-----A------AAC--C--TTTAGTGTTTC---C-AATG---G--GTAA--AA---AACAATTTGACCCT--TTG-T-GAAAAGGT-AC--ATT-----T--TTCCTCTCGCCCTGCAACTTGC----ATCAAACGTCTC-TCAGAGCGCT---GG-CAA-A--A---CA---AAGCCACC-CCGA--T-C-GG----GGCCGA------TCC-AGGATTT-GA--GGTTA-GA-GGGGGCCGCA---ACTT--T----A-------TAAGACAAG-GGGGCT---GAGGGGAT
gi|2 : ttctgggagaaaaatggggaaaaactattcggatcgacacaccgtagcgtcgcctgattctaaactatttaccacccattgatttccggttattgacaaagaagttcaagaactgtttccTCGTT-TA-TTTC-TCA--GACA-GT-CG-AACAAAAAATGAT-T-A-GA-TATGAA--------------AATT---TTAGGGGGG---GGGG----GGCA-G-----C--ACCGAGTATGCCTCCTCTA------AA-TT-CAC---------C---A-CT-GCC--G-AT-CAAT-CAA-AGTA-G-CACCGG-TTTGA-TG-TTTCA-AC--AG-AT-A------catagggctgaattcgtttatttctcagacagtcgaacaaaaaatgattagatatgaaaattttaggggggggggggcagcaccgagtatgcctcctctaaattcaccactgccgatcaatcaaagtagcaccggtttgatgtttcaacagatannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngccagcgtttgcaatgacaattannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntcagttataaataattatatgtagcattttccagagttcggcaa
gi|20 : ttctgggagaaaaatggggaaaaactattcggatcgacacaccgtagcgtcgcctgattctaaactatttaccacccattgatttccggttattgacaaagaagttcaagaactgtttccactacctgtggcgaaaaaaaacctttagtgtttccaatgggtaaaaaacaatttgaccctttgtgaaaaggtacatttttcctctcgccctgcaacttgcatcaaacgtctctcagagcgctggcaaaacaaagccaccccgatcggggccgatccaggatttgaggttagagggggccgcaactttataagacaagggggctgaggggatcatagggctgaatACTGCTTG-GGTGAAAA-A-----ACCCCAAAAG--CACT-----GTTTC---C-ATTG---G--GTAG--AT---GATAATTTGAATAA--TTG-T-GAAA-GGC-ATCAATT-----TTCTnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngccagcgtttgcaatgacaattannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntcagttataaataattatatgtagcattttccagagttcggcaa
gi|20 : accagcgatcgactaccggttatagacgaagcagcattctGC----ATCAATTTTCTC-CCAAAGACTT---CGTTAA-AG-A---CA---AAGGCACT-TCGA--T-CAGG----GGCGGA------TGT-AGAATTT-G---GGT---------GG-CACA---TCTT--T----A-------Tcccaaagacttcgttaaagacaaaggcacttcgatcaggggcggatgtagaatttgggtggcacatctttatt
gi|21 : accagcgatcgactaccggttatagacgaagcagcattctactgcttgggtgaaaaaaccccaaaagcactgtttccattgggtagatgataatttgaataattgtgaaagATTCT-C-C-AA--TAAA--GCA--A---------TTC-A-ATTGTCGTT-TACTTTC-AAA--AAGA-GT-CT-AA--ACTAATGAT------------AA--------------ACTT---TTA-----------------GG-T-G-----C--G-------------------------A-CC-CGCTTAGAATTAC---A-CT-G-C--G-AT-C-TT-CAA-AGTA-G-CGACGG-TTTGA-TG-TT-TA-TC--AT-AT-A------C----A--GAC---TG---ACT-TT---AG-TGAGAACG-TA-GAAT-AAGTAAGTCCATAGt
gi|22 : TAT-AGGT--GAACTTAATAAAA--CGA-C-AC---GAAA----TTTAATAG--TTTT-----------------T-----------------------TTTTTTTTTTT------------------------------TAATTATTTATCAATTTT-G-G-AA--TAAA---------TAATA--A------ATTCTC----------C-AAATAAAAA-GC-----A--AC-AATAAT-T-C-AA-T----------------------------AGGGGAC---AACC----GA-CTG-----C--GA----------------A------AC-CC-CGC---------T---A-A-------G-AT-CATT-CAA--GTA-G-CGCCGGTTTTAA-TG-TTTCA-TC--AG-AT-A------ttggactgtctttta
gi|23 : C-CCGA--T-CAGG----CGCGGA------TCC-ATGATTT-GA--GGTTA-CA-GGGGA-CAAA---ACTT--C----A-------TGAGG
gi|24 : TT-CAA-AGTACG-CGCAGG-TT-GA-TG-TTCCG---------------------------------G---TCC-TTTCAAACTGAG-GCGTTA-G-AA-AATT---TCCAAATA-CGTCAGCgaagaggtctgacnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnttgatgaggtgaaattaatgaaa
gi|25 : T--TTG-T-GA--GGG--AT--ATT-----CTTTTACT--------ACGGCTTGC----ATCAA--TTTTAATCATCGAGTTCTTGGTCAACAA-AGCTCACTTAAGCCACC-TCGAA-T-GAGGTGAAGGCGGGATTT--TCT-AGGATTT-GA--GGTTT-AA-GGGGG--ACA---ACTTAGG----A-------TGAGTCGCAAGGGGGTCTCGAGGGAATAatggtcagtgacaattannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnagtatatgtaacattttccacaga
gi|26 : tttaggca-----GTTTC---T-ACTGCCTGTTATAA--AT---AACAATTTGTCCAT--ATG-T-GAAAGGGC-AT--TTT-----TTCTTCCTCTAGCCTGGCGACTTGC----ATCAA--TTCTC-TCAGAGAGTT---GATGAA-AG-A---CA---AGTCCACC-CCGA--T-CAGG----CGCGGA------TCC-ATGATTT-GA--GGTTA-CA-GGGGA-CAAA---ACTT--C----A-------TGAGGat
gi|27 : TTCT-C-A-AA--TAAA---CC--A-CAATA--A-TC-A--TAGTCGTT-TA-TTTCGAAA--AAGA-GT-CTTAA--ACTAATGATGT-A--------------------------TT---TTAGGTGCG---AAAC----C----------C--GCT---------------A------AA-TC-CAC---------C---A-CT-GCC--GGAT-CATT-CAAGAGTA-G-CGACAG-TTTGA-TG-TTTCA-TC--AATAT-A------C----A--GAC-A-TGGGATCC-TTTCAAG-TGA--ACG-Tgaagagg
gi|29 : atAA--GCTCCTGGA---------------------ATTTA-CAG---------ATAT-TATA---AG--------GT------TT------------G---AATTTCAA-TATTTT-CTTTCACTTTTTTATGAGGT--GAAACTGATGAAA--TGA-C-AC---TAAG----TTTAAGGA-----T-----------------T-----------------------TCT------TG--------------------G-----GGGA-----AAATAT-GATTTG-C-A-AA--TATAA-GTA--A-CTAGA--AACC-A-A
gi|3 : tcaagggccgACTGACTGTGGCGAATT-A-----A------TAT--T--T-----GTTTC---C-ACTG---G--GTAA--AT---AATAATTTGACCCT--TTG-T-GAAAGGGC-AT--GCT-----TTCTTTTTCTAGCCCGGCGAATAGC----ATCAAACCTCTC-TCAGAGA--T---GATAAA-AA-A---CA---AAGCCACC-CCGA--T-CAGG----CGCGGA------TCC-AGGATTG-GA--GGTTA-CA-CGGGA-TAAA---ACTT--C----A-------TGAGGCCCGCGGGG-----GAGGGGGTGGCAGCTCTCAGA---------------------TTTTA-TA----------AGAG-TAGA-----------ATGT------CTC----CTATGTAGT--ATTTTTAA-TATATA-CTGTCATTTTTTTATGAGGC--GAAATTAATAAAA--CGA-C-AC---AAAA----TTTAAGAG--TTTT-----------------G-----------------------TTTGGA---TTGTTGGGGGGGGGGGGGTTGGG-----GGGGTAAATAACTATACATTCT-C-C--A--TAAAA-GCA--A-CAATA--AATC-ATATTGTCGTT----TCTC-AAA--AAGA-GT-CG-AA--ACTATTGAT-T-A-AATT-TGAA--------------ATTT---TTAGGGGGG---GGGG----GG-G-G-----G--GC----------------A------AA-TC-CGC---------C---A-CT-GCC--G-AT-CATT-CAA-AGTA---CGCCGG-TTCGA-TG-GTCCA-TC--AG-AT-A------C----A--GAC-A-TA---TAC-TTTCAAC-TGAG-ACG-TA-G-ATAAATT---TCCA-AGA-CGC-AGC
gi|30 : -C-C-AA--ATAAA-GCA--A-ACATA--ATTC-A-ATTTCCGTT-TA-TTTC-AAA--AAGAAGT-CT-AA--ACTGATGAT-T-G-CA-G-TTAG--------------GTTT---------------GCGT----AA-C-C-----C--GCT---------------A------AA-AC-CAC---------C---A-CTTGCC--G-ATTCATTTCAA-AGTA-G--ACCAG-TTTGA-TG-T-CCA-TC--AG-AT-A------C----A--GAC-A-T
gi|32 : ttaAA--------------ATTT---A-AGGGGGG---GGGGCGCCGG-T-G-----C--GCCCACCCCTT-------A------AA-TC-CGC---------C---A-CT-t
gi|33 : gatatataatctttataaaactaagagggggcgccgtgtgtaatttattaattttttcagtgaaaaataagattatatataatacacttggtTCT-C-C-AAG-TAAAA-GCA--A-CAATA--ATTC-A-ATTGTCTTT-TC-TTTC-AAA--AAGA-GT-AT-AA--ACTAATTAT-T-A-A------------------------TT---TTAGGTGCG---AACC---------------C--GCT---------------A------AA-TC-CAC---------C---A-CT-GCC--G-AT-CATT-CAA-AGTA-G-CGACGG-TCTGA-TG-TTC
gi|34 : AAATATATAAAAATTCT-C---AA--TAATG-ATATTA--AATA--AATT-A-ATTGTCGTT-TA-TTTC-TCA--GAGA-GT-TA-AA--ACAAATTAT-T------T-T--A--------------ATT-------GGGGAG---GGGG----GG-G-G-----G--GC-------------------------------T---------C---A-GT-GTC--A-AT-CATT-TAA-A
gi|35 : AAATATATAAAAATTCT-C---AA--TAATG-ATATTA--AATA--AATT-A-ATTGTCGTT-TA-TTTC--TA--GCGA-GT-TA-AA--ACAAATTAT-T------T-TAA----------------------TTGGGAGGG---GGGG----GG-G-G-----C-----------------------------------T---------C---A-GT-GTC--A-AT-CATT-TAA-A
gi|36 : ACTATCTGTGGCAA--------------------------------TTTC---C-ACTG---G--GTAA--AT---AACAATTTTACCCT--TTG-T-GAAAGGGC-GT--ATT-----TTCTTCCTTTAGCCCGACGACTTGC----ATCAAAC
gi|38 : cagttcgcaaaactggttctAGCCACC-TCGAAGTGTAGATGAAGGCGGGACTCTTTCT-AGGATTT-GAC-GGTTA--A-GGGG---ACA---ACTT--TATGGA-------TGAGG--CAAGGGGTCT--GAGGGAATA
gi|39 : -------TGAGTCCTGCGGGGA----GAGGGAAAA-----TCCTAGA---------------------TTTTA-CA----------AGAG-TAGA---AGTTGAAGAAGTTGACTACTC----CCATGTAGTC-ATTTTTAA-TATTTT-CTat
gi|4 : C-TCGA--A-CAGG----GGCGGA------TCT-AGGATTT-GA--GTTTA-TA-GGGG
gi|4 : TTAATGAGGT--GAAATTAATAAAA--TGA-C-AC---AAAA----TTTATGAGGTTTTT-----------------T-----------------------TTT------TT----------------------------------TAAATATAAA--------------GGAA-TTA--A-TAGTA--A----------------------C-AAA--AA-A-GT-CG-AA--AATAATTAT-T-TTAA-TATATA--------------ATGT---GTAGAGGGC---GCCG----GG-T-G-----C--GC----------------A----------C-CGT---------CTAAATCT-GCA--G-AT-AATT-CAA-AGTA-G-AGCTGG-TTTGA-TA-TCCAA-TC--AG-AT-ATACATGT----A--GGC-A-TG---ACC-TTTCaactgaggggtctgtnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnttaatgaggtgaaattaataaaatgacacaaaatttatgaggttttttttttttaaatataaaggaattaatagtaacaaaaaagtcgaaaataattattttaatatataatgtgtagagggcgccgggtgcgcaccgtctaaatctgcagataattcaaagtagagctggtttgatatccaatcagatatacatgtaggcatgacctttc
gi|40 : ctcgaacaggggcggatctaggatttgagtttataggggaactgaggggtctgtnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnTTTTTAATGAGGT--GAAATTGATAAGA--TGA-C-AC----AAT----TTTAAGAA--TTTT-----------------T-----------------------T------------------------------------GGAA-AA--AAATATAAGTTCTAA-C-AA--TA
gi|43 : tttcagtactctaa-----GTTTCAAAC-CCTG---G--G-AA--AT---GACAAGTTGACCCT--GTG-TAAAAAGGGT-TT--ACT-----TATTTCCTCTCGCCC
gi|44 : -----ATGT------CTC----CCATGTAGTC-ATTTTCAA-TATTTT------A-TTTTTTATAAGGT--GAAAATGATAAAC--TGA-C-AC---Atg
gi|45 : GA--T-CAAG----GACGAG------TCC-AGGATTT-GA--GATTA-GATGCGGG-CGCA---ACTT--T----A-------TAAGGC
gi|46 : acg-AA-TGTGAA--------------TTTC---TTTGGGGGG---GGGG----GG-G-G-----G--GC----------------A------AATTT-CG----------A---A-CT-GTA--A-AT-AATT-TAA-Aagg
gi|47 : T-CTGTAATTTTTTTACTGGGA--AAAATTAATTAAA--TTA-C-AC---A
gi|5 : aagagaggtccgccgAA----TTTAAA-------T-----------------T-----------------------TTT------TT--------------------G----------AAA-AAAT-TA---TCT-C---AA--TAAAA-GTA--A-CAATA--CGTC-A-ATTAACGTT-TA-ACTG-AGA--GAGA-GT-CG-AA--AATAATGAT-T-A-TA-TATGAA--------------AATT---GTAAGGGGG---CGGG----GG-------------C----------------A------GG-TTGCGC-------------A-CC-CCCTAA-AT-CATT-CAA-AGTA-G-CGACGG-TTTGG-TG-TTCCA-TC--AG-AT-A------C----A--GTC-C-TG---TTC-TTTCAAC-CGAA-ACG-TA-G-AC-AATT---TGCAtt
gi|51 : G-TGAG-ACG-TA-G-AT-AATT---TCCATAGG-aaacaaacaacatttgcaatgacaattaannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncattatatgtagcattttccagagttcggcaacttgatacaactattttgccttacc
gi|6 : TTTTTATAAGGT--GAAATTGACAAA---TGAAC-AC---AAAA----TTTAAGAGGTTTTTAAATATTTATTTATTTAT-----------------------TTT------TT--------------------GTTTTTGGAATAGA---ATATAAATTTT-C-C-AAA-TAAAA-GCA--A-CAATA--ATTC-A-ATTGTCGTT-TA-TTTC-AAN--NNNN-NN-NN-NN--NNNNNNNNN-N-N-NN-N-NNNNNNNNNNNNNNNNNNATTTAATTTAGGGGGC---ACCG----GG-T-G-----C--GA----------------ACCGCTTAA-TC-CTC---------C---A-CT-GCC--G-AT-CATC-TAA-CGTA-G-CGCCGG-TCT-A-TG-TTCCA-TC--AC-AT-A------C----A--GAC-A-TG---ACC-TTTCAAG-TGAG-ACG-TA-G-AT-AGTT---CCCATTGG-TGT-AGactgtctttgaa
gi|7 : --T-CAAA----GGTGGAG-----TCC-AGGATTTTGATTGGT-A-TA-G-----CACACAAACTT--A----AGAGATTCTGAGGCCCTCAGAG-----GA----ATAA--GCTCCAAGAAGCTTCTGAATTTGTAACACATTTTA-TA----------AATGCTAGA---AGT-----ACGT------CCCTAAGCCATGCAGGC-ATTTTAAA-CATTTTACTGTC--TTTTCGATGAAGTTTAGAATTA-TAAAA--TGA-CAAC---AAAAAATTTTTCATGG--TTTG-----------------A-----------------------TTT------C---------------------------AAAAGAAAGACGTGTAAATTgactgtctttg
gi|8 : TTTATTAGGT--GAAATTAATAAAA--TGA-C-AC---AAAA----TTTAGAGG--TTTT-----------------TAAAAAAAATTATTTATCTATTTATTT------TT--------------------G-----G-----AATAAATATAAATTCT-C-A-AA--TAAAA-GCA--A-CAATA--ATTC-A-AT-GTCGTT-T--TTTC-AAA--A-GA-GTTCT-AA--ACTAATGAT-T-A-A------------------------TT---TTAGGGGGACACGGGT----GC-G-AACC--C--GCT---------------A------AA-TC--AC---------C---A-CTAGCC--G-AT-TATT-CAA-AGTA-G-CGCGGG-TTTGA-TG-TTCCA-TC--AG-AT-A------C----A--GAC-A-TG---ACC-TTTCAAG-TGAA-ACG-TAGG-AT-AATT---TCCATAGGCCGT-AGtaattgtttaagtttgaaaaatagagtaaagggggaggggggatgcaaccttctaaatccgtcaactactaaatcca
gi|9 : AATTCT-C-C-AAA-TAATA-GCA--ATCAATA--ATTC-A-ATTGTCGTT-TA-TTT--AAA--AAGA-GT-CCTAA--ACTAATGAT---A-AA-T-------------------ATT------------A---GGTG----CG-A-A-----C--TCCCTT------------A------AA-TG-CAC---------C---A-TT-GCC--G-AT-CATT-CAA-AGTA-G-CGACGG-GTTGA-TGTTTTCA-TCATAT-AT-A------C----A--G-C-A-TG---ACC-T-------------CG-TA---AT-AATT---TTCATAGG-CGT-AGtactgtctt
8 sequences could not be aligned to this reference sequence:
Unaligned ( gi|28 ): GGAGGAAACTTCTCGTAATGCAGACAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGAAAATTAAAGAAAGGTTATCAGAAAACTGAAGGGGACATTACAAATTATAAGTCAGATGC
Unaligned ( gi|31 ): GGATTTCGGGAGAAAATACTCTACTCGATAAACCACGCCCGTTCCGTCACCTGTTCTAAATTTATTATTGGACCTATGGCGCTAGCCTGACTTTAGTCGAAGGCAGTTTGAGAACTGTTTCTACTGCCTGTGTCGAAGGGGAAAAGAAATTC
Unaligned ( gi|37 ): TATTTAAATGGGGGTTATAAACACAAGAAAATTAAGAAAGTAATAGAAAACTGAAGGAGGGGGATGCAATATTATGTTCATATGCAGAAAAATGTATACAAGGGGGGGGGGG
Unaligned ( gi|41 ): GGGGGAGAAATTGAGGAAAACCGGCCTCCACTCAGATCAACAAGCCATTCCGTCGCCTGGTTCTAAAGTTATTTACAAGCGATCG
Unaligned ( gi|42 ): CTGTCTTATGAAGAGGGGGGAGGGGGGCAAACTTCTAAACTATATGCGACACAATGAACCAGAAATTTGATG
Unaligned ( gi|48 ): CTGTGACTTTGATGCAGAAGGGGGGGGGGGTAAACTTCTAAATTATGTGC
Unaligned ( gi|49 ): GCACAGAGTGGTATGGGGGAGAGACCTGTCAAACTTCTAGTATATGGA
Unaligned ( gi|50 ): AGTTCGAGAACCGTTTTACTGTCTGTGGCGATTTCGACTGGGTACA
Alignments
lowQualScore : 11111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111 11111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 333333333333333333333333333333 11 11111 1111 111111 1111 222222222222222 33333 1111 555555555555555555555 3333333333 22222222222 111111 11111 33333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333 11 33333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333
lowQualScore : 444444444444444444444444444444 777 4 777 55 11 777 55 3 3 44 88 00000 0 7 2 9999 3 4 0 7777 4 66 777 777 3 66 2 4444 666666 2 5 66 1111 66 555 333333333333333 66 77777 5555 44 666666666666666666666 5 0000000000 66 22222222222 444444 00000 33 4 0 4 4 6 3 1 66 33 2 5 2 444 44444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444 6 2 0 1 999 22 55 55 1 22 6 1 1 2 2 2 44 2 2 77 22 11111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111 1 1 2 777777777 333 1 3 22 2 2 1 1 2 2 2 2 2 2 2 33 33 2 99999999999 33 0 444 6666 2 66 2 2 3 3 3 555 5 5
lowQualScore : .............................. ... . ... .. .. ... .. . . .. .. ..... . . . .... . . . .... . .. ... ... . .. . .... ...... . . .. .... .. ... ............... .. ..... .... .. ..................... . .......... .. ........... ...... ..... .. . . . . . . . .. .. . . . ... ............................................................................................ . . . . ... .. .. .. . .. . . . . . . .. . . .. .. ..................................................................................................... . . . ......... ... . . .. . . . . . . . . . . . .. .. . ........... .. . ... .... . .. . . . . . ... . .
lowQualScore : 999999999999999999999999999999 000 0 000 55 00 000 00 6 6 00 66 00000 8 1 5 4444 4 4 1 9999 4 33 888 888 3 33 7 0000 000000 7 3 88 2222 44 444 777777777777777 00 99999 3333 33 777777777777777777777 7 7777777777 44 66666666666 444444 99999 00 4 1 4 0 2 4 2 33 77 7 3 7 777 00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 8 9 7 8 888 33 66 22 9 66 6 9 9 0 0 0 88 0 0 77 99 00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 9 9 5 666666666 333 9 8 88 0 0 9 9 2 2 5 2 2 2 4 22 66 4 66666666666 77 6 444 0000 9 55 9 9 1 1 1 444 0 7
consensus : ACTGCCTGTGGCGAAGN-A-----A------AAN--C--T-----GTTTC---C-ACTG---G--GTAA--AT---AACAATTTGACCCT--TTG-T-GAAAGGGC-AT--ATT-----TTCTTCCTCTAGCCCGGCGACTTGC----ATCAAACTTCTC-TCAGAGAGTT---GGTCAA-AG-A---CA---AAGCCACC-CCGA--T-CAGG----GGCGGA------TCC-AGGATTT-GA--GGTTA-NA-GGGGG-CACA---ACTT--C----A-------TGAGGCCCGCGGGG-----GAGGGGATAG--GCTCCCGGA---------------------TTTTA-CA----------AGAG-TAGA---AGT-----ATGT------CTC----CCATGTAGTCA-TTTTTAA-TATTTT-CTGTCATTTTTTTATGAGGT--GAAATTAATAAAA--TGA-C-A-C---AAAATTTAAGAG--TTTT-----------------T-----------------------TTT------TT--------------------G-----GGGA-AAATAAA-TATAAATTCT-C-C-AA--TAAAA-GCA--A-CAATA--ANTCA-A-TTGTCGTT-TA-TTTC-AAA--AAGA-GT-CN-AA--ACTAATGAT-TA-AA-T-TGAA--------------ATTT---TTAGGGGGG---GGGG----GG-G-G-----C--GC----------------A------A-------A-TC-CGC---------C---A-CT-GCC--G-AT-CATT-CAA-AGTA-G-CGCCGG-TTTGA-TG-TTCCA-TC--AG-AT-A------C----A--GAC-A-TG---NCC-TTTCAAG-TGAG-ACG-TA-G-AT-AATT---TCCATAGG-CGT-AGC
Reference ( family-325 ) : ACTGCCTGTGGCGAAGN-A-----A------AAN--C--T-----GTTTC---C-ACTG---G--GTAA--AT---AACAATTTGACCCT--TTG-T-GAAAGGGC-AT--ATT-----TTCTTCCTCTAGCCCGGCGACTTGC----ATCAAACTTCTC-TCAGAGAGTT---GGTCAA-AG-A---CA---AAGCCACC-CCGA--T-CAGG----GGCGGA------TCC-AGGATTT-GA--GGTTA-NA-GGGGG-CACA---ACTT--C----A-------TGAGGCCCGCGGGG-----GAGGGGATAG--GCTCCCGGA---------------------TTTTA-CA----------AGAG-TAGA---AGT-----ATGT------CTC----CCATGTAGTCA-TTTTTAA-TATTTT-CTGTCATTTTTTTATGAGGT--GAAATTAATAAAA--TGA-C-A-C---AAAATTTAAGAG--TTTT-----------------T-----------------------TTT------TT--------------------G-----GGGATAAATAAA-TATAAATTCT-C-C-AA--TAAAA-GCA--A-CAATA--ANTCA-A-TTGTCGTT-TA-TTTC-AAA--AAGA-GT-CN-AA--ACTAATGAT-TA-AA-T-TGAA--------------ATTT---TTAGGGGGG---GGGG----GG-G-G-----C--GC----------------A------A-------A-TC-CGC---------C---A-CT-GCC--G-AT-CATT-CAA-AGTA-G-CGCCGG-TTTGA-TG-TTCCA-TC--AG-AT-A------C----A--GAC-A-TG---NCC-TTTCAAG-TGAG-ACG-TA-G-AT-AATT---TCCATAGG-CGT-AGC
gi|1 : ACTGCTTTTGGTGAAGGGA-----A------AAT--A--T-----GATTC---C-ATTG---G--GTAA--AT---AACAACTTGACCCT--TTG-T-GAATGGGT-AT--ATT-----TTC--CCTCT--CCCTGTGGCTTGC----ATCAAACTTCTT-TCTGAGAGTT----GTC-A-AG-A---CG---AGGCTGCC-CCGA--T-CAGT----GGCGGA------TCC-AGGATTT-GA--GGTTA------GCG-CACA---ACTT--C----AGGAGATCTGAGTCCCTCAG---------AGGGCTAG--GCTCCTTGA---------------------TTTTA-C-----------AGAT-TTTATTTA-T-----ATGT------CTC----TCACTTAATAA-TTTTTTA-TATTCT-CTGTCA--TTTTGATGAGAT--G-GACTGATAAAAATTGG-CAA-CAAAAAAAATTAAG-------T-----------------T-----------------------TTC------TG--------------------G-----GGGAAAAAT--A-TATCAATTTT-C-CTAA--TAAAG-GTA--A-CAAGA--AATCA-A-ATGTGGTT-TA-TTAC-AGA--GAAA-GT-TG-AA-----AATAAT-TA-GT-T-TGAA--------------A--A---TAATGGGTG---AGGG----TG-T-G-----C--ACCCTCT-----------A------A-------A-TC-CGC---------C---A-CT-ACC--G-AT-CATT-CAA-AGTA-G-CGCCGG-TTTGA-TG-TTCCA-TC--AG-AT-A------C----A--GGG-A-TG---C----TGCAAC-TGAG-------------AATT---TCCA
gi|10 : gggggggggctatactcggattaacacacgcctttccgtcattaaatttagtgaccagtgatcgatttcagactattgagaattgttttcactaactgtttctAAATTTCTC-TGAGAATGCT---GGTCAA-AC-A---CA---AAACAACC-TTGA--C-CAGG----GGAGGA------TCC-AGGACTT-GA--TATTA-GA-GGAGC-GAAA---ATTT--T----A-------AGAGGCataaggccagcgtttgcaacgacaattagnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngtaaaattctccagatttcaataacctgatgcaatcactattttgccc
gi|10 : TTTA-CA----------CGGT-TAAA---AGT-----ATAT------CTT----TCATGTGGTCA-TTTTTAA-TATTTT--TCTCATTTTTT------------GATT-------------C-A-C---AAAATGTAACA------T-----------------T-----------------------TTT------TT--------------------A--------------AAA-CATGAATTTT-TAT-GA--TCAAT-GTC--A-CAATA--AATCA-A-ATGagggtgtctgtggtccctagagatttaaaataccgaaagcctcttgtaaagcatttacacggttaaaagtatatctttcatgtggtcatttttaatatttttctcattttttgattcacaaaatgtaacatttttttaaaacatgaatttttatgatcaatgtcacaataaatcaaatgatg
gi|11 : aaatttctctgagaatgctggtcaaacacaaaacaaccttgaccaggggaggatccaggacttgatattagaggagcgaaaattttaagaggcagggtgtctgtggtccctagagatttaaaataccgaaagcctcttgtaaagcaTGACGAAGC-AGTTCGA------AAA--C--T-----GTTTC---CTACTG---G--CCAGCCATGGCAACAATTAACCCCT--TTGTT-AAAAAGGCTAT--ATT-----TTC--CCTCTCGCCCTGCGGTTCAT----AT-AAACTTCTC-TC-GAGAATT---AGTCAA-AGAA---CA---AAGCCACCTTCGA--T-CAGGC---GCCGGA------TCT-AGGATTT-AA--TGTTACGA-GGGGG-CACA---ACTT--C----atg
gi|12 : ccggtgatT--AAAATTAATACAT--TGA-C-A-C---AAAAT------G--TTTT-----------------T--------------------------------------------------------------GATAAAAAAA-TATAGATTCT-C-A-AAA-TAAAA--TA--A-CAATA--AATCA-A-TCGTCGTT-TA-TTTC-A------GA-GT-CG-AA--AATAATAAT-CA-AAATATGAA--------------ATTA---T------------AGG----TG-G-G-----C--GC----------------A------ACCTTTAAA-TC-TGC---------C---A-CT-ACC--G-GT-CATT-CAA-ATCA-G-CACTAG-TTTGA-TG-TTCCT-TC--AG-AT-A------C----A--GGC-C-TA---TCC-TTTTAAC-TGAG-ACG-TA-G-AC-AATT---CCcagggatcagatagcaagccacacctaaattgcttagttctacagtacaaaacactagcgatgaaa
gi|13 : TCT-C-C-AA--ATAAA-GCA--A-CAATA--ATTCA-A--TGCAGTT-TA--TTC-TAA--AAGA-GT-CT-AA--A-TAATG----A-AA-T-------------------ATTT---T-------------------AG-G-GCCTCCC--GT----------------A------A-------A-TC---C---------C---A-C--G---------CATT-CAA-AGTA-G-CA-CGG-TTT-A-CG-TTCAA-T------AT-A-----------A--GACAA-TG---ACC--TTCAA--TGAG-AC-----G-AT-AATT---TCaaaactcccaccggttgcaatgaaaatta
gi|14 : aACTGCTTGTGGCGAAGA-A-----A------AAATTC--T-----GTTTC---C-ACTG---G--GTAGATAT---AACAATTAGACCCTAAATG-T-GAAAGGGT-AT--Aaaggtcggactgcttttgagagaggggggaggggggaaacttctagtaatgcgacagcgcaaaaatcaaaagcctaatggaacactaaat
gi|15 : gagaaaattttaatcggataaacacagccgttccgtcgaatggtttttaatttatttaacaggaattttatatgctataaataaaagcaataaattttccttattggcatctaggctagcgaagactaaaacgtcgaagatgttcgagaactaattct--T-CAAA----GGTGGA------TCCCAGGATTTTGA--GGTTG-A---GCAC-CACA---ACTT--A----A-------GGAGATCC
gi|15 : CA-TTTTAAAACATTTT-C-GTCATTTTCGGATGAGTTA-GAATTTAATAAAA--T-A-C-A-C---AAAAagaggcctcagctacgggataacgcttccaagaagtgcttctgatattgtacacattttattaaagctaccgaaagtcaccaaagtccttaagagcatgaccagcgacattttaaaacattttcgtcattttcggatgagttagaatttaataaaatacacaaaaaaatt
gi|16 : tcaaaggtggatcccaggattttgaggttgagcaccacaacttaaggagatccagaggcctcagctacgggataacgcttccaagaagtgcttctgatattgtacacattttattaaagctaccgaaagtcaccaaagtccttaagagcatgaccagcgaACTACCTTTGGCAAAAT-A-----A------AAC--C--T-----GTTTC---C-ACTG---G--GTAA--AT---AACAATTTGACTCT--TTG-T-GAAAGGGC-ATA-ATTATATGTTCTTCCTCTAGCCCGGCGACCTGCAAGAATCAAACTTCTC-TCAAAGAGTT---GATCAA-AG-A---AA---AAGTCACC-CCGA--T-CAGG----CGCGGA------TCC-AGGATTT-aaatt
gi|17 : ttttagatattgaagaagcaggccgagaaaaccaggttctatAATTCT-C-C-AAAATAAAAAGCA--A-CAATATAATTCA-A-TTGTCGTT-TA-TTTT-CAA--AAAA-GT-CT-AA--ACTAATGAT-----------AA--------------ATTT---T------AG---GTGC----GA-G-C-----C--GCTA--------------A------A-------A-TC-CAC---------C---A-CT-GCC--G-AT-CATT-CAA--GTA-G-CGACG--TTTGAATG-TTTCA-TC--AT-AT-A------T----ACTGAC-A-TG---ACCCTTTCAAG-TGAG-ACG-TA-G-AT-AATT---TTCATAGG-CGT-AG
gi|18 : TTT-C-C-AAAATAAAA-GCA----CAATA--ATTCA---TTGTCGTT-TA-TTTA-AAA--AAGA-GT-CGTAA--ACTAATGAT-----------AA--------------ATTT---T-----------AGTT----GG-A-A-----CCAGC----------------T------A-------A-TC-C-C---------C---A-CT-GCT--G-CT-TATT-CAA-AGTA-GTCGACAC-TTTGA-TG-TTTCAGTC--AT-ATGA------CCTGTA--GAC-AGTG---AC---TTCAAG-TGAG-ACG-TA-G-AT-AATT---TCCATA-G-CGT-gttactgtctttga
gi|19 : GGGACAG---CTCCCGGA---------------------TTTTAGCAGAGTTTATAAAGAG-TAGA---AGT-----ATGT------CTT----CCATGTTGTTAACTTGTAA-TATTTT-CTGTCATTTTATT--GAGGT--GAAATTAATAAAA--TGA-C-AAC---A-------------TTTT-----------------T-----------------------CTT------TT--------------------A----------AAATAAAATATCAATTCT-C-CCAA--TAAT--GCA--A-CATAA--ACTCA-AATTGTCGTTCTA-TTTC-AAAG-AAGA--T-CG-Ataggactgtatttga
gi|2 : tccaattACTACCTGTGGCGAAAA-A-----A------AAC--C--TTTAGTGTTTC---C-AATG---G--GTAA--AA---AACAATTTGACCCT--TTG-T-GAAAAGGT-AC--ATT-----T--TTCCTCTCGCCCTGCAACTTGC----ATCAAACGTCTC-TCAGAGCGCT---GG-CAA-A--A---CA---AAGCCACC-CCGA--T-C-GG----GGCCGA------TCC-AGGATTT-GA--GGTTA-GA-GGGGGCCGCA---ACTT--T----A-------TAAGACAAG-GGGGCT---GAGGGGAT
gi|2 : ttctgggagaaaaatggggaaaaactattcggatcgacacaccgtagcgtcgcctgattctaaactatttaccacccattgatttccggttattgacaaagaagttcaagaactgtttccTCGTT-TA-TTTC-TCA--GACA-GT-CG-AACAAAAAATGAT-TA-GA-TATGAA--------------AATT---TTAGGGGGG---GGGG----GGCA-G-----C--ACCGAGTATGCCTCCTCTA------A-------A-TT-CAC---------C---A-CT-GCC--G-AT-CAAT-CAA-AGTA-G-CACCGG-TTTGA-TG-TTTCA-AC--AG-AT-A------catagggctgaattcgtttatttctcagacagtcgaacaaaaaatgattagatatgaaaattttaggggggggggggcagcaccgagtatgcctcctctaaattcaccactgccgatcaatcaaagtagcaccggtttgatgtttcaacagatannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngccagcgtttgcaatgacaattannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntcagttataaataattatatgtagcattttccagagttcggcaa
gi|20 : ttctgggagaaaaatggggaaaaactattcggatcgacacaccgtagcgtcgcctgattctaaactatttaccacccattgatttccggttattgacaaagaagttcaagaactgtttccactacctgtggcgaaaaaaaacctttagtgtttccaatgggtaaaaaacaatttgaccctttgtgaaaaggtacatttttcctctcgccctgcaacttgcatcaaacgtctctcagagcgctggcaaaacaaagccaccccgatcggggccgatccaggatttgaggttagagggggccgcaactttataagacaagggggctgaggggatcatagggctgaatACTGCTTG-GGTGAAAA-A-----ACCCCAAAAG--CACT-----GTTTC---C-ATTG---G--GTAG--AT---GATAATTTGAATAA--TTG-T-GAAA-GGC-ATCAATT-----TTCTnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngccagcgtttgcaatgacaattannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntcagttataaataattatatgtagcattttccagagttcggcaa
gi|20 : accagcgatcgactaccggttatagacgaagcagcattctGC----ATCAATTTTCTC-CCAAAGACTT---CGTTAA-AG-A---CA---AAGGCACT-TCGA--T-CAGG----GGCGGA------TGT-AGAATTT-G---GGT---------GG-CACA---TCTT--T----A-------Tcccaaagacttcgttaaagacaaaggcacttcgatcaggggcggatgtagaatttgggtggcacatctttatt
gi|21 : accagcgatcgactaccggttatagacgaagcagcattctactgcttgggtgaaaaaaccccaaaagcactgtttccattgggtagatgataatttgaataattgtgaaagATTCT-C-C-AA--TAAA--GCA--A---------TTCA-A-TTGTCGTT-TACTTTC-AAA--AAGA-GT-CT-AA--ACTAATGAT-----------AA--------------ACTT---TTA-----------------GG-T-G-----C--G--------------------------------A-CC-CGCTTAGAATTAC---A-CT-G-C--G-AT-C-TT-CAA-AGTA-G-CGACGG-TTTGA-TG-TT-TA-TC--AT-AT-A------C----A--GAC---TG---ACT-TT---AG-TGAGAACG-TA-GAAT-AAGTAAGTCCATAGt
gi|22 : TAT-AGGT--GAACTTAATAAAA--CGA-C-A-C---GAAATTTAATAG--TTTT-----------------T-----------------------TTTTTTTTTTT------------------------------TAATTATT-TATCAATTTT-G-G-AA--TAAA---------TAATA--A-----A-TTCTC----------C-AAATAAAAA-GC-----A--AC-AATAAT-TC-AA-T----------------------------AGGGGAC---AACC----GA-CTG-----C--GA----------------A------A-------C-CC-CGC---------T---A-A-------G-AT-CATT-CAA--GTA-G-CGCCGGTTTTAA-TG-TTTCA-TC--AG-AT-A------ttggactgtctttta
gi|23 : C-CCGA--T-CAGG----CGCGGA------TCC-ATGATTT-GA--GGTTA-CA-GGGGA-CAAA---ACTT--C----A-------TGAGG
gi|24 : TT-CAA-AGTACG-CGCAGG-TT-GA-TG-TTCCG---------------------------------G---TCC-TTTCAAACTGAG-GCGTTA-G-AA-AATT---TCCAAATA-CGTCAGCgaagaggtctgacnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnttgatgaggtgaaattaatgaaa
gi|25 : T--TTG-T-GA--GGG--AT--ATT-----CTTTTACT--------ACGGCTTGC----ATCAA--TTTTAATCATCGAGTTCTTGGTCAACAA-AGCTCACTTAAGCCACC-TCGAA-T-GAGGTGAAGGCGGGATTT--TCT-AGGATTT-GA--GGTTT-AA-GGGGG--ACA---ACTTAGG----A-------TGAGTCGCAAGGGGGTCTCGAGGGAATAatggtcagtgacaattannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnagtatatgtaacattttccacaga
gi|26 : tttaggca-----GTTTC---T-ACTGCCTGTTATAA--AT---AACAATTTGTCCAT--ATG-T-GAAAGGGC-AT--TTT-----TTCTTCCTCTAGCCTGGCGACTTGC----ATCAA--TTCTC-TCAGAGAGTT---GATGAA-AG-A---CA---AGTCCACC-CCGA--T-CAGG----CGCGGA------TCC-ATGATTT-GA--GGTTA-CA-GGGGA-CAAA---ACTT--C----A-------TGAGGat
gi|27 : TTCT-C-A-AA--TAAA---CC--A-CAATA--A-TCA---TAGTCGTT-TA-TTTCGAAA--AAGA-GT-CTTAA--ACTAATGATGTA--------------------------TT---TTAGGTGCG---AAAC----C----------C--GCT---------------A------A-------A-TC-CAC---------C---A-CT-GCC--GGAT-CATT-CAAGAGTA-G-CGACAG-TTTGA-TG-TTTCA-TC--AATAT-A------C----A--GAC-A-TGGGATCC-TTTCAAG-TGA--ACG-Tgaagagg
gi|29 : atAA--GCTCCTGGA---------------------ATTTA-CAG---------ATAT-TATA---AG--------GT------TT------------G--A-ATTTCAA-TATTTT-CTTTCACTTTTTTATGAGGT--GAAACTGATGAAA--TGA-C-A-C---TAAGTTTAAGGA-----T-----------------T-----------------------TCT------TG--------------------G-----GGGA-----AAA-TAT-GATTTG-C-A-AA--TATAA-GTA--A-CTAGA--AACCA-A-
gi|3 : tcaagggccgACTGACTGTGGCGAATT-A-----A------TAT--T--T-----GTTTC---C-ACTG---G--GTAA--AT---AATAATTTGACCCT--TTG-T-GAAAGGGC-AT--GCT-----TTCTTTTTCTAGCCCGGCGAATAGC----ATCAAACCTCTC-TCAGAGA--T---GATAAA-AA-A---CA---AAGCCACC-CCGA--T-CAGG----CGCGGA------TCC-AGGATTG-GA--GGTTA-CA-CGGGA-TAAA---ACTT--C----A-------TGAGGCCCGCGGGG-----GAGGGGGTGGCAGCTCTCAGA---------------------TTTTA-TA----------AGAG-TAGA-----------ATGT------CTC----CTATGTAGT-A-TTTTTAA-TATATA-CTGTCATTTTTTTATGAGGC--GAAATTAATAAAA--CGA-C-A-C---AAAATTTAAGAG--TTTT-----------------G-----------------------TTTGGA---TTGTTGGGGGGGGGGGGGTTGGG-----GGGGTAAATAAC-TATACATTCT-C-C--A--TAAAA-GCA--A-CAATA--AATCATA-TTGTCGTT----TCTC-AAA--AAGA-GT-CG-AA--ACTATTGAT-TA-AATT-TGAA--------------ATTT---TTAGGGGGG---GGGG----GG-G-G-----G--GC----------------A------A-------A-TC-CGC---------C---A-CT-GCC--G-AT-CATT-CAA-AGTA---CGCCGG-TTCGA-TG-GTCCA-TC--AG-AT-A------C----A--GAC-A-TA---TAC-TTTCAAC-TGAG-ACG-TA-G-ATAAATT---TCCA-AGA-CGC-AGC
gi|30 : -C-C-AA--ATAAA-GCA--A-ACATA--ATTCA-A-TTTCCGTT-TA-TTTC-AAA--AAGAAGT-CT-AA--ACTGATGAT-TG-CA-G-TTAG--------------GTTT---------------GCGT----AA-C-C-----C--GCT---------------A------A-------A-AC-CAC---------C---A-CTTGCC--G-ATTCATTTCAA-AGTA-G--ACCAG-TTTGA-TG-T-CCA-TC--AG-AT-A------C----A--GAC-A-T
gi|32 : ttaAA--------------ATTT---A-AGGGGGG---GGGGCGCCGG-T-G-----C--GCCCACCCCTT-------A------A-------A-TC-CGC---------C---A-CT-t
gi|33 : gatatataatctttataaaactaagagggggcgccgtgtgtaatttattaattttttcagtgaaaaataagattatatataatacacttggtTCT-C-C-AAG-TAAAA-GCA--A-CAATA--ATTCA-A-TTGTCTTT-TC-TTTC-AAA--AAGA-GT-AT-AA--ACTAATTAT-TA-A------------------------TT---TTAGGTGCG---AACC---------------C--GCT---------------A------A-------A-TC-CAC---------C---A-CT-GCC--G-AT-CATT-CAA-AGTA-G-CGACGG-TCTGA-TG-TTC
gi|34 : AAATATA-TAAAAATTCT-C---AA--TAATG-ATATTA--AATA--AATTA-A-TTGTCGTT-TA-TTTC-TCA--GAGA-GT-TA-AA--ACAAATTAT-T-----T-T--A--------------ATT-------GGGGAG---GGGG----GG-G-G-----G--GC--------------------------------------T---------C---A-GT-GTC--A-AT-CATT-TAA-A
gi|35 : AAATATA-TAAAAATTCT-C---AA--TAATG-ATATTA--AATA--AATTA-A-TTGTCGTT-TA-TTTC--TA--GCGA-GT-TA-AA--ACAAATTAT-T-----T-TAA----------------------TTGGGAGGG---GGGG----GG-G-G-----C------------------------------------------T---------C---A-GT-GTC--A-AT-CATT-TAA-A
gi|36 : ACTATCTGTGGCAA--------------------------------TTTC---C-ACTG---G--GTAA--AT---AACAATTTTACCCT--TTG-T-GAAAGGGC-GT--ATT-----TTCTTCCTTTAGCCCGACGACTTGC----ATCAAAC
gi|38 : cagttcgcaaaactggttctAGCCACC-TCGAAGTGTAGATGAAGGCGGGACTCTTTCT-AGGATTT-GAC-GGTTA--A-GGGG---ACA---ACTT--TATGGA-------TGAGG--CAAGGGGTCT--GAGGGAATA
gi|39 : -------TGAGTCCTGCGGGGA----GAGGGAAAA-----TCCTAGA---------------------TTTTA-CA----------AGAG-TAGA---AGTTGAAGAAGTTGACTACTC----CCATGTAGTCA-TTTTTAA-TATTTT-CTat
gi|4 : C-TCGA--A-CAGG----GGCGGA------TCT-AGGATTT-GA--GTTTA-TA-GGGG
gi|4 : TTAATGAGGT--GAAATTAATAAAA--TGA-C-A-C---AAAATTTATGAGGTTTTT-----------------T-----------------------TTT------TT----------------------------------TAAA-TATAAA--------------GGAA-TTA--A-TAGTA--A----------------------C-AAA--AA-A-GT-CG-AA--AATAATTAT-TTTAA-TATATA--------------ATGT---GTAGAGGGC---GCCG----GG-T-G-----C--GC----------------A-----------------C-CGT---------CTAAATCT-GCA--G-AT-AATT-CAA-AGTA-G-AGCTGG-TTTGA-TA-TCCAA-TC--AG-AT-ATACATGT----A--GGC-A-TG---ACC-TTTCaactgaggggtctgtnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnttaatgaggtgaaattaataaaatgacacaaaatttatgaggttttttttttttaaatataaaggaattaatagtaacaaaaaagtcgaaaataattattttaatatataatgtgtagagggcgccgggtgcgcaccgtctaaatctgcagataattcaaagtagagctggtttgatatccaatcagatatacatgtaggcatgacctttc
gi|40 : ctcgaacaggggcggatctaggatttgagtttataggggaactgaggggtctgtnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnTTTTTAATGAGGT--GAAATTGATAAGA--TGA-C-A-C----AATTTTAAGAA--TTTT-----------------T-----------------------T-------------------------------------GGA-AAA-AAA-TATAAGTTCTAA-C-AA--TA
gi|43 : tttcagtactctaa-----GTTTCAAAC-CCTG---G--G-AA--AT---GACAAGTTGACCCT--GTG-TAAAAAGGGT-TT--ACT-----TATTTCCTCTCGCCC
gi|44 : -----ATGT------CTC----CCATGTAGTCA-TTTTCAA-TATTTT------A-TTTTTTATAAGGT--GAAAATGATAAAC--TGA-C-A-C---Atg
gi|45 : GA--T-CAAG----GACGAG------TCC-AGGATTT-GA--GATTA-GATGCGGG-CGCA---ACTT--T----A-------TAAGGC
gi|46 : acg-AA-TGTGAA--------------TTTC---TTTGGGGGG---GGGG----GG-G-G-----G--GC----------------A------A-------ATTT-CG----------A---A-CT-GTA--A-AT-AATT-TAA-Aagg
gi|47 : T-CTGTAATTTTTTTACTGGGA--AAAATTAATTAAA--TTA-C-A-C---A
gi|5 : aagagaggtccgccgAATTTAAA-------T-----------------T-----------------------TTT------TT--------------------G----------AAA-AAA-T-TA---TCT-C---AA--TAAAA-GTA--A-CAATA--CGTCA-A-TTAACGTT-TA-ACTG-AGA--GAGA-GT-CG-AA--AATAATGAT-TA-TA-TATGAA--------------AATT---GTAAGGGGG---CGGG----GG-------------C----------------A------G-------G-TTGCGC-------------A-CC-CCCTAA-AT-CATT-CAA-AGTA-G-CGACGG-TTTGG-TG-TTCCA-TC--AG-AT-A------C----A--GTC-C-TG---TTC-TTTCAAC-CGAA-ACG-TA-G-AC-AATT---TGCAtt
gi|51 : G-TGAG-ACG-TA-G-AT-AATT---TCCATAGG-aaacaaacaacatttgcaatgacaattaannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncattatatgtagcattttccagagttcggcaacttgatacaactattttgccttacc
gi|6 : TTTTTATAAGGT--GAAATTGACAAA---TGAAC-A-C---AAAATTTAAGAGGTTTTTAAATATTTATTTATTTAT-----------------------TTT------TT--------------------GTTTTTGGAATAGA---A-TATAAATTTT-C-C-AAA-TAAAA-GCA--A-CAATA--ATTCA-A-TTGTCGTT-TA-TTTC-AAN--NNNN-NN-NN-NN--NNNNNNNNN-NN-NN-N-NNNNNNNNNNNNNNNNNNATTTAATTTAGGGGGC---ACCG----GG-T-G-----C--GA----------------ACCGCTTA-------A-TC-CTC---------C---A-CT-GCC--G-AT-CATC-TAA-CGTA-G-CGCCGG-TCT-A-TG-TTCCA-TC--AC-AT-A------C----A--GAC-A-TG---ACC-TTTCAAG-TGAG-ACG-TA-G-AT-AGTT---CCCATTGG-TGT-AGactgtctttgaa
gi|7 : --T-CAAA----GGTGGAG-----TCC-AGGATTTTGATTGGT-A-TA-G-----CACACAAACTT--A----AGAGATTCTGAGGCCCTCAGAG-----GA----ATAA--GCTCCAAGAAGCTTCTGAATTTGTAACACATTTTA-TA----------AATGCTAGA---AGT-----ACGT------CCCTAAGCCATGCAGGCA-TTTTAAA-CATTTTACTGTC--TTTTCGATGAAGTTTAGAATTA-TAAAA--TGA-CAA-C---AAAAgactgtctttg
gi|8 : TTTATTAGGT--GAAATTAATAAAA--TGA-C-A-C---AAAATTTAGAGG--TTTT-----------------TAAAAAAAATTATTTATCTATTTATTT------TT--------------------G-----G-----AATAAA-TATAAATTCT-C-A-AA--TAAAA-GCA--A-CAATA--ATTCA-A-T-GTCGTT-T--TTTC-AAA--A-GA-GTTCT-AA--ACTAATGAT-TA-A------------------------TT---TTAGGGGGACACGGGT----GC-G-AACC--C--GCT---------------A------A-------A-TC--AC---------C---A-CTAGCC--G-AT-TATT-CAA-AGTA-G-CGCGGG-TTTGA-TG-TTCCA-TC--AG-AT-A------C----A--GAC-A-TG---ACC-TTTCAAG-TGAA-ACG-TAGG-AT-AATT---TCCATAGGCCGT-AGaatttttcatggtttgatttcaaaagaaagacgtgtaaatttaattgtttaagtttgaaaaatagagtaaagggggaggggggatgcaaccttctaaatccgtcaactactaaatcca
gi|9 : AATTCT-C-C-AAA-TAATA-GCA--ATCAATA--ATTCA-A-TTGTCGTT-TA-TTT--AAA--AAGA-GT-CCTAA--ACTAATGAT--A-AA-T-------------------ATT------------A---GGTG----CG-A-A-----C--TCCCTT------------A------A-------A-TG-CAC---------C---A-TT-GCC--G-AT-CATT-CAA-AGTA-G-CGACGG-GTTGA-TGTTTTCA-TCATAT-AT-A------C----A--G-C-A-TG---ACC-T-------------CG-TA---AT-AATT---TTCATAGG-CGT-AGtactgtctt
8 sequences could not be aligned to this reference sequence:
Unaligned ( gi|28 ): GGAGGAAACTTCTCGTAATGCAGACAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGAAAATTAAAGAAAGGTTATCAGAAAACTGAAGGGGACATTACAAATTATAAGTCAGATGC
Unaligned ( gi|31 ): GGATTTCGGGAGAAAATACTCTACTCGATAAACCACGCCCGTTCCGTCACCTGTTCTAAATTTATTATTGGACCTATGGCGCTAGCCTGACTTTAGTCGAAGGCAGTTTGAGAACTGTTTCTACTGCCTGTGTCGAAGGGGAAAAGAAATTC
Unaligned ( gi|37 ): TATTTAAATGGGGGTTATAAACACAAGAAAATTAAGAAAGTAATAGAAAACTGAAGGAGGGGGATGCAATATTATGTTCATATGCAGAAAAATGTATACAAGGGGGGGGGGG
Unaligned ( gi|41 ): GGGGGAGAAATTGAGGAAAACCGGCCTCCACTCAGATCAACAAGCCATTCCGTCGCCTGGTTCTAAAGTTATTTACAAGCGATCG
Unaligned ( gi|42 ): CTGTCTTATGAAGAGGGGGGAGGGGGGCAAACTTCTAAACTATATGCGACACAATGAACCAGAAATTTGATG
Unaligned ( gi|48 ): CTGTGACTTTGATGCAGAAGGGGGGGGGGGTAAACTTCTAAATTATGTGC
Unaligned ( gi|49 ): GCACAGAGTGGTATGGGGGAGAGACCTGTCAAACTTCTAGTATATGGA
Unaligned ( gi|50 ): AGTTCGAGAACCGTTTTACTGTCTGTGGCGATTTCGACTGGGTACA
Alignments
lowQualScore : 111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111 11111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 333333333333333333333333333333 11 11111 1111 111111 1111 222222222222222 33333 1111 555555555555555555555 3333333333 22222222222 111111 11111 222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222 11 33333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333
lowQualScore : 444444444444444444444444444444 777 4 777 55 11 777 55 3 3 44 88 00000 0 7 2 9999 3 4 0 7777 4 66 777 777 3 66 2 4444 666666 2 5 66 1111 66 555 333333333333333 66 77777 5555 44 666666666666666666666 5 0000000000 66 22222222222 444444 00000 33 4 0 4 4 6 3 1 66 33 2 5 2 444 6666 555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555 7 2 8888 0 1 999 22 55 55 1 22 6 1 1 2 2 2 44 2 2 77 22 11111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111 1 1 2 777777777 333 1 1 1 22 2 2 1 1 2 2 2 2 2 2 2 33 33 2 99999999999 33 0 444 8888 66 2 2 3 3 3 555 5 5
lowQualScore : .............................. ... . ... .. .. ... .. . . .. .. ..... . . . .... . . . .... . .. ... ... . .. . .... ...... . . .. .... .. ... ............... .. ..... .... .. ..................... . .......... .. ........... ...... ..... .. . . . . . . . .. .. . . . ... .... ................................................................................................ . . .... . . ... .. .. .. . .. . . . . . . .. . . .. .. ..................................................................................................... . . . ......... ... . . . .. . . . . . . . . . . . .. .. . ........... .. . ... .... .. . . . . . ... . .
lowQualScore : 999999999999999999999999999999 000 0 000 55 00 000 00 6 6 00 66 00000 8 1 5 4444 4 4 1 9999 4 33 888 888 3 33 7 0000 000000 7 3 88 2222 44 444 777777777777777 00 99999 3333 33 777777777777777777777 7 7777777777 44 66666666666 444444 99999 00 4 1 4 0 2 4 2 33 77 7 3 7 777 1111 222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222 3 7 3333 1 8 888 33 66 22 9 66 6 9 9 0 0 0 88 0 0 77 99 00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 9 9 5 666666666 333 9 9 9 88 0 0 9 9 2 2 5 2 2 2 4 22 66 4 66666666666 77 6 444 9999 55 9 9 1 1 1 444 0 7
consensus : ACTGCCTGTGGCGAAGN-A-----A------AAN--C--T-----GTTTC---C-ACTG---G--GTAA--AT---AACAATTTGACCCT--TTG-T-GAAAGGGC-AT--ATT-----TTCTTCCTCTAGCCCGGCGACTTGC----ATCAAACTTCTC-TCAGAGAGTT---GGTCAA-AG-A---CA---AAGCCACC-CCGA--T-CAGG----GGCGGA------TCC-AGGATTT-GA--GGTTA-NA-GGGGG-CACA---ACTT--C----A-------TGAGGCCCGCGGGG-----GAGGGGATAG--GCTCCCGGA---------------------TTTTA-CA----------AGAG-TAGA---AGT-----ATGT------CTC----CCATGTAGTCA-TTTTTAA-TATTTT-CTGTCATTTTTTTATGAGGT--GAAATTAATAAAA--TGA-C-A-C---AAAA----TTTAAGAG------------------------TTTTT-----------------------TT-------T------TTGG--G------------------AAATA-AA----TATAAATTCT-C-C-AA--TAAAA-GCA--A-CAATA--ANTCA-A-TTGTCGTT-TA-TTTC-AAA--AAG-AGT-CN-AA--ACTAATGAT-TA-AA-T-TGAA--------------ATTT---TTAGGGGGG---GGGG----GG-G-G-----C--GC----------------A------A-------A-TC-CGC---------C---A-C-T-GCC--G-A-TCA-TTCAA-AGTA-G-CGCCGG-TTTG-ATG-TTCCA-TC--AG-AT-A------C----A--GAC-A-TG---NCCTTTCAAG-TGAG-ACG-TA-G-AT-AATT---TCCATAGG-CGT-AGC
Reference ( family-325 ) : ACTGCCTGTGGCGAAGN-A-----A------AAN--C--T-----GTTTC---C-ACTG---G--GTAA--AT---AACAATTTGACCCT--TTG-T-GAAAGGGC-AT--ATT-----TTCTTCCTCTAGCCCGGCGACTTGC----ATCAAACTTCTC-TCAGAGAGTT---GGTCAA-AG-A---CA---AAGCCACC-CCGA--T-CAGG----GGCGGA------TCC-AGGATTT-GA--GGTTA-NA-GGGGG-CACA---ACTT--C----A-------TGAGGCCCGCGGGG-----GAGGGGATAG--GCTCCCGGA---------------------TTTTA-CA----------AGAG-TAGA---AGT-----ATGT------CTC----CCATGTAGTCA-TTTTTAA-TATTTT-CTGTCATTTTTTTATGAGGT--GAAATTAATAAAA--TGA-C-A-C---AAAA----TTTAAGAG------------------------TTTTT-----------------------TT-------T------TTGGGGA------------------AAATA-AA----TATAAATTCT-C-C-AA--TAAAA-GCA--A-CAATA--ANTCA-A-TTGTCGTT-TA-TTTC-AAA--AAG-AGT-CN-AA--ACTAATGAT-TA-AA-T-TGAA--------------ATTT---TTAGGGGGG---GGGG----GG-G-G-----C--GC----------------A------A-------A-TC-CGC---------C---A-C-T-GCC--G-A-TCA-TTCAA-AGTA-G-CGCCGG-TTTG-ATG-TTCCA-TC--AG-AT-A------C----A--GAC-A-TG---NCCTTTCAAG-TGAG-ACG-TA-G-AT-AATT---TCCATAGG-CGT-AGC
gi|1 : ACTGCTTTTGGTGAAGGGA-----A------AAT--A--T-----GATTC---C-ATTG---G--GTAA--AT---AACAACTTGACCCT--TTG-T-GAATGGGT-AT--ATT-----TTC--CCTCT--CCCTGTGGCTTGC----ATCAAACTTCTT-TCTGAGAGTT----GTC-A-AG-A---CG---AGGCTGCC-CCGA--T-CAGT----GGCGGA------TCC-AGGATTT-GA--GGTTA------GCG-CACA---ACTT--C----AGGAGATCTGAGTCCCTCAG---------AGGGCTAG--GCTCCTTGA---------------------TTTTA-C-----------AGAT-TTTATTTA-T-----ATGT------CTC----TCACTTAATAA-TTTTTTA-TATTCT-CTGTCA--TTTTGATGAGAT--G-GACTGATAAAAATTGG-CAA-CAAAAAAA----ATTAAG------------------------------T-----------------------TT-------T------CTGGGGG------------------AAAAA-TA----TATCAATTTT-C-CTAA--TAAAG-GTA--A-CAAGA--AATCA-A-ATGTGGTT-TA-TTAC-AGA--GAA-AGT-TG-AA-----AATAAT-TA-GT-T-TGAA--------------A--A---TAATGGGTG---AGGG----TG-T-G-----C--ACCCTCT-----------A------A-------A-TC-CGC---------C---A-C-T-ACC--G-A-TCA-TTCAA-AGTA-G-CGCCGG-TTTG-ATG-TTCCA-TC--AG-AT-A------C----A--GGG-A-TG---C---TGCAAC-TGAG-------------AATT---TCCA
gi|10 : gggggggggctatactcggattaacacacgcctttccgtcattaaatttagtgaccagtgatcgatttcagactattgagaattgttttcactaactgtttctAAATTTCTC-TGAGAATGCT---GGTCAA-AC-A---CA---AAACAACC-TTGA--C-CAGG----GGAGGA------TCC-AGGACTT-GA--TATTA-GA-GGAGC-GAAA---ATTT--T----A-------AGAGGCataaggccagcgtttgcaacgacaattagnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngtaaaattctccagatttcaataacctgatgcaatcactattttgccc
gi|10 : TTTA-CA----------CGGT-TAAA---AGT-----ATAT------CTT----TCATGTGGTCA-TTTTTAA-TATTTT--TCTCATTTTTT------------GATT-------------C-A-C---AAAA----TGTAACA----------------------------TT-----------------------TT-------T------TTA--------------------------A-AA----CATGAATTTT-TAT-GA--TCAAT-GTC--A-CAATA--AATCA-A-ATGagggtgtctgtggtccctagagatttaaaataccgaaagcctcttgtaaagcatttacacggttaaaagtatatctttcatgtggtcatttttaatatttttctcattttttgattcacaaaatgtaacatttttttaaaacatgaatttttatgatcaatgtcacaataaatcaaatgatg
gi|11 : aaatttctctgagaatgctggtcaaacacaaaacaaccttgaccaggggaggatccaggacttgatattagaggagcgaaaattttaagaggcagggtgtctgtggtccctagagatttaaaataccgaaagcctcttgtaaagcaTGACGAAGC-AGTTCGA------AAA--C--T-----GTTTC---CTACTG---G--CCAGCCATGGCAACAATTAACCCCT--TTGTT-AAAAAGGCTAT--ATT-----TTC--CCTCTCGCCCTGCGGTTCAT----AT-AAACTTCTC-TC-GAGAATT---AGTCAA-AGAA---CA---AAGCCACCTTCGA--T-CAGGC---GCCGGA------TCT-AGGATTT-AA--TGTTACGA-GGGGG-CACA---ACTT--C----atg
gi|12 : ccggtgatT--AAAATTAATACAT--TGA-C-A-C---AAAA----T------G------------------------TTTTT------------------------------------------GATA------------------AAA-A-AA----TATAGATTCT-C-A-AAA-TAAAA--TA--A-CAATA--AATCA-A-TCGTCGTT-TA-TTTC-A------G-AGT-CG-AA--AATAATAAT-CA-AAATATGAA--------------ATTA---T------------AGG----TG-G-G-----C--GC----------------A------ACCTTTAAA-TC-TGC---------C---A-C-T-ACC--G-G-TCA-TTCAA-ATCA-G-CACTAG-TTTG-ATG-TTCCT-TC--AG-AT-A------C----A--GGC-C-TA---TCCTTTTAAC-TGAG-ACG-TA-G-AC-AATT---CCcagggatcagatagcaagccacacctaaattgcttagttctacagtacaaaacactagcgatgaaa
gi|13 : TCT-C-C-AA--ATAAA-GCA--A-CAATA--ATTCA-A--TGCAGTT-TA--TTC-TAA--AAG-AGT-CT-AA--A-TAATG----A-AA-T-------------------ATTT---T-------------------AG-G-GCCTCCC--GT----------------A------A-------A-TC---C---------C---A-C---G---------CA-TTCAA-AGTA-G-CA-CGG-TTT--ACG-TTCAA-T------AT-A-----------A--GACAA-TG---ACC-TTCAA--TGAG-AC-----G-AT-AATT---TCaaaactcccaccggttgcaatgaaaatta
gi|14 : aACTGCTTGTGGCGAAGA-A-----A------AAATTC--T-----GTTTC---C-ACTG---G--GTAGATAT---AACAATTAGACCCTAAATG-T-GAAAGGGT-AT--Aaaggtcggactgcttttgagagaggggggaggggggaaacttctagtaatgcgacagcgcaaaaatcaaaagcctaatggaacactaaat
gi|15 : gagaaaattttaatcggataaacacagccgttccgtcgaatggtttttaatttatttaacaggaattttatatgctataaataaaagcaataaattttccttattggcatctaggctagcgaagactaaaacgtcgaagatgttcgagaactaattct--T-CAAA----GGTGGA------TCCCAGGATTTTGA--GGTTG-A---GCAC-CACA---ACTT--A----A-------GGAGATCC
gi|15 : CA-TTTTAAAACATTTT-C-GTCATTTTCGGATGAGTTA-GAATTTAATAAAA--T-A-C-A-C---AAAA----agaggcctcagctacgggataacgcttccaagaagtgcttctgatattgtacacattttattaaagctaccgaaagtcaccaaagtccttaagagcatgaccagcgacattttaaaacattttcgtcattttcggatgagttagaatttaataaaatacacaaaaaaatt
gi|16 : tcaaaggtggatcccaggattttgaggttgagcaccacaacttaaggagatccagaggcctcagctacgggataacgcttccaagaagtgcttctgatattgtacacattttattaaagctaccgaaagtcaccaaagtccttaagagcatgaccagcgaACTACCTTTGGCAAAAT-A-----A------AAC--C--T-----GTTTC---C-ACTG---G--GTAA--AT---AACAATTTGACTCT--TTG-T-GAAAGGGC-ATA-ATTATATGTTCTTCCTCTAGCCCGGCGACCTGCAAGAATCAAACTTCTC-TCAAAGAGTT---GATCAA-AG-A---AA---AAGTCACC-CCGA--T-CAGG----CGCGGA------TCC-AGGATTT-aaatt
gi|17 : ttttagatattgaagaagcaggccgagaaaaccaggttctatAATTCT-C-C-AAAATAAAAAGCA--A-CAATATAATTCA-A-TTGTCGTT-TA-TTTT-CAA--AAA-AGT-CT-AA--ACTAATGAT-----------AA--------------ATTT---T------AG---GTGC----GA-G-C-----C--GCTA--------------A------A-------A-TC-CAC---------C---A-C-T-GCC--G-A-TCA-TTC-A-AGTA-G-CGAC-G-TTTGAATG-TTTCA-TC--AT-AT-A------T----ACTGAC-A-TGA--CCCTTTCAAG-TGAG-ACG-TA-G-AT-AATT---TTCATAGG-CGT-AG
gi|18 : TTT-C-C-AAAATAAAA-GCA----CAATA--ATTCA---TTGTCGTT-TA-TTTA-AAA--AAG-AGT-CGTAA--ACTAATGAT-----------AA--------------ATTT---T-----------AGTT----GG-A-A-----CCAGC----------------T------A-------A-TC-C-C---------C---A-C-T-GCT--G-C-TTA-TTCAA-AGTA-GTCGACAC-TTTG-ATG-TTTCAGTC--AT-ATGA------CCTGTA--GAC-AGTG---AC--TTCAAG-TGAG-ACG-TA-G-AT-AATT---TCCATA-G-CGT-gttactgtctttga
gi|19 : GGGACAG---CTCCCGGA---------------------TTTTAGCAGAGTTTATAAAGAG-TAGA---AGT-----ATGT------CTT----CCATGTTGTTAACTTGTAA-TATTTT-CTGTCATTTTATT--GAGGT--GAAATTAATAAAA--TGA-C-AAC---A---------------------------------------TTTTT-----------------------CT-------T------TT----A------------------AAATA-AAA---TATCAATTCT-C-CCAA--TAAT--GCA--A-CATAA--ACTCA-AATTGTCGTTCTA-TTTC-AAAG-AAG-A-T-CG-Ataggactgtatttga
gi|2 : tccaattACTACCTGTGGCGAAAA-A-----A------AAC--C--TTTAGTGTTTC---C-AATG---G--GTAA--AA---AACAATTTGACCCT--TTG-T-GAAAAGGT-AC--ATT-----T--TTCCTCTCGCCCTGCAACTTGC----ATCAAACGTCTC-TCAGAGCGCT---GG-CAA-A--A---CA---AAGCCACC-CCGA--T-C-GG----GGCCGA------TCC-AGGATTT-GA--GGTTA-GA-GGGGGCCGCA---ACTT--T----A-------TAAGACAAG-GGGGCT---GAGGGGAT
gi|2 : ttctgggagaaaaatggggaaaaactattcggatcgacacaccgtagcgtcgcctgattctaaactatttaccacccattgatttccggttattgacaaagaagttcaagaactgtttccTCGTT-TA-TTTC-TCA--GAC-AGT-CG-AACAAAAAATGAT-TA-GA-TATGAA--------------AATT---TTAGGGGGG---GGGG----GGCA-G-----C--ACCGAGTATGCCTCCTCTA------A-------A-TT-CAC---------C---A-C-T-GCC--G-A-TCA-ATCAA-AGTA-G-CACCGG-TTTG-ATG-TTTCA-AC--AG-AT-A------catagggctgaattcgtttatttctcagacagtcgaacaaaaaatgattagatatgaaaattttaggggggggggggcagcaccgagtatgcctcctctaaattcaccactgccgatcaatcaaagtagcaccggtttgatgtttcaacagatannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngccagcgtttgcaatgacaattannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntcagttataaataattatatgtagcattttccagagttcggcaa
gi|20 : ttctgggagaaaaatggggaaaaactattcggatcgacacaccgtagcgtcgcctgattctaaactatttaccacccattgatttccggttattgacaaagaagttcaagaactgtttccactacctgtggcgaaaaaaaacctttagtgtttccaatgggtaaaaaacaatttgaccctttgtgaaaaggtacatttttcctctcgccctgcaacttgcatcaaacgtctctcagagcgctggcaaaacaaagccaccccgatcggggccgatccaggatttgaggttagagggggccgcaactttataagacaagggggctgaggggatcatagggctgaatACTGCTTG-GGTGAAAA-A-----ACCCCAAAAG--CACT-----GTTTC---C-ATTG---G--GTAG--AT---GATAATTTGAATAA--TTG-T-GAAA-GGC-ATCAATT-----TTCTnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngccagcgtttgcaatgacaattannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntcagttataaataattatatgtagcattttccagagttcggcaa
gi|20 : accagcgatcgactaccggttatagacgaagcagcattctGC----ATCAATTTTCTC-CCAAAGACTT---CGTTAA-AG-A---CA---AAGGCACT-TCGA--T-CAGG----GGCGGA------TGT-AGAATTT-G---GGT---------GG-CACA---TCTT--T----A-------Tcccaaagacttcgttaaagacaaaggcacttcgatcaggggcggatgtagaatttgggtggcacatctttatt
gi|21 : accagcgatcgactaccggttatagacgaagcagcattctactgcttgggtgaaaaaaccccaaaagcactgtttccattgggtagatgataatttgaataattgtgaaagATTCT-C-C-AA--TAAA--GCA--A---------TTCA-A-TTGTCGTT-TACTTTC-AAA--AAG-AGT-CT-AA--ACTAATGAT-----------AA--------------ACTT---TTA-----------------GG-T-G-----C--G--------------------------------A-CC-CGCTTAGAATTAC---A-C-T-G-C--G-A-TC--TTCAA-AGTA-G-CGACGG-TTTG-ATG-TT-TA-TC--AT-AT-A------C----A--GAC---TG---ACTTT---AG-TGAGAACG-TA-GAAT-AAGTAAGTCCATAGt
gi|22 : TAT-AGGT--GAACTTAATAAAA--CGA-C-A-C---GAAA----TTTAATAG------------------------TTTTT-----------------------TTTTTTTTTT------TT-----------------------AATTA-TT----TATCAATTTT-G-G-AA--TAAA---------TAATA--A-----A-TTCTC----------C-AAATAAAA-AGC-----A--AC-AATAAT-TC-AA-T----------------------------AGGGGAC---AACC----GA-CTG-----C--GA----------------A------A-------C-CC-CGC---------T---A-A--------G-A-TCA-TTCAA--GTA-G-CGCCGGTTTTA-ATG-TTTCA-TC--AG-AT-A------ttggactgtctttta
gi|23 : C-CCGA--T-CAGG----CGCGGA------TCC-ATGATTT-GA--GGTTA-CA-GGGGA-CAAA---ACTT--C----A-------TGAGG
gi|24 : -TTCAA-AGTACG-CGCAGG-TT-G-ATG-TTCCG---------------------------------G---TCCTTTCAAACTGAG-GCGTTA-G-AA-AATT---TCCAAATA-CGTCAGCgaagaggtctgacnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnttgatgaggtgaaattaatgaaa
gi|25 : T--TTG-T-GA--GGG--AT--ATT-----CTTTTACT--------ACGGCTTGC----ATCAA--TTTTAATCATCGAGTTCTTGGTCAACAA-AGCTCACTTAAGCCACC-TCGAA-T-GAGGTGAAGGCGGGATTT--TCT-AGGATTT-GA--GGTTT-AA-GGGGG--ACA---ACTTAGG----A-------TGAGTCGCAAGGGGGTCTCGAGGGAATAatggtcagtgacaattannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnagtatatgtaacattttccacaga
gi|26 : tttaggca-----GTTTC---T-ACTGCCTGTTATAA--AT---AACAATTTGTCCAT--ATG-T-GAAAGGGC-AT--TTT-----TTCTTCCTCTAGCCTGGCGACTTGC----ATCAA--TTCTC-TCAGAGAGTT---GATGAA-AG-A---CA---AGTCCACC-CCGA--T-CAGG----CGCGGA------TCC-ATGATTT-GA--GGTTA-CA-GGGGA-CAAA---ACTT--C----A-------TGAGGat
gi|27 : TTCT-C-A-AA--TAAA---CC--A-CAATA--A-TCA---TAGTCGTT-TA-TTTCGAAA--AAG-AGT-CTTAA--ACTAATGATGTA--------------------------TT---TTAGGTGCG---AAAC----C----------C--GCT---------------A------A-------A-TC-CAC---------C---A-C-T-GCC--GGA-TCA-TTCAAGAGTA-G-CGACAG-TTTG-ATG-TTTCA-TC--AATAT-A------C----A--GAC-A-TGGGATCCTTTCAAG-TGA--ACG-Tgaagagg
gi|29 : atAA--GCTCCTGGA---------------------ATTTA-CAG---------ATAT-TATA---AG--------GT------TT------------G--A-ATTTCAA-TATTTT-CTTTCACTTTTTTATGAGGT--GAAACTGATGAAA--TGA-C-A-C---TAAG----TTTAAGGA----------------------------T-----------------------TT-------C------TTGGGGG------------------A---A-AA----TAT-GATTTG-C-A-AA--TATAA-GTA--A-CTAGA--AACCA-A-
gi|3 : tcaagggccgACTGACTGTGGCGAATT-A-----A------TAT--T--T-----GTTTC---C-ACTG---G--GTAA--AT---AATAATTTGACCCT--TTG-T-GAAAGGGC-AT--GCT-----TTCTTTTTCTAGCCCGGCGAATAGC----ATCAAACCTCTC-TCAGAGA--T---GATAAA-AA-A---CA---AAGCCACC-CCGA--T-CAGG----CGCGGA------TCC-AGGATTG-GA--GGTTA-CA-CGGGA-TAAA---ACTT--C----A-------TGAGGCCCGCGGGG-----GAGGGGGTGGCAGCTCTCAGA---------------------TTTTA-TA----------AGAG-TAGA-----------ATGT------CTC----CTATGTAGT-A-TTTTTAA-TATATA-CTGTCATTTTTTTATGAGGC--GAAATTAATAAAA--CGA-C-A-C---AAAA----TTTAAGAG------------------------TTTTG-----------------------TT-------TGGATTGTTGGGGGGGGGGGGGTTGGGGGGGTAAATA-AC----TATACATTCT-C-C--A--TAAAA-GCA--A-CAATA--AATCATA-TTGTCGTT----TCTC-AAA--AAG-AGT-CG-AA--ACTATTGAT-TA-AATT-TGAA--------------ATTT---TTAGGGGGG---GGGG----GG-G-G-----G--GC----------------A------A-------A-TC-CGC---------C---A-C-T-GCC--G-A-TCA-TTCAA-AGTA---CGCCGG-TTCG-ATG-GTCCA-TC--AG-AT-A------C----A--GAC-A-TA---TACTTTCAAC-TGAG-ACG-TA-G-ATAAATT---TCCA-AGA-CGC-AGC
gi|30 : -C-C-AA--ATAAA-GCA--A-ACATA--ATTCA-A-TTTCCGTT-TA-TTTC-AAA--AAGAAGT-CT-AA--ACTGATGAT-TG-CA-G-TTAG--------------GTTT---------------GCGT----AA-C-C-----C--GCT---------------A------A-------A-AC-CAC---------C---A-CTT-GCC--G-ATTCATTTCAA-AGTA-G--ACCAG-TTTG-ATG--TCCA-TC--AG-AT-A------C----A--GAC-A-T
gi|32 : ttaAA--------------ATTT---A-AGGGGGG---GGGGCGCCGG-T-G-----C--GCCCACCCCTT-------A------A-------A-TC-CGC---------C---A-C-T-t
gi|33 : gatatataatctttataaaactaagagggggcgccgtgtgtaatttattaattttttcagtgaaaaataagattatatataatacacttggtTCT-C-C-AAG-TAAAA-GCA--A-CAATA--ATTCA-A-TTGTCTTT-TC-TTTC-AAA--AAG-AGT-AT-AA--ACTAATTAT-TA-A------------------------TT---TTAGGTGCG---AACC---------------C--GCT---------------A------A-------A-TC-CAC---------C---A-C-T-GCC--G-A-TCA-TTCAA-AGTA-G-CGACGG-TCTG-ATG-TTC
gi|34 : ------------------AAATA-TA----TAAAAATTCT-C---AA--TAATG-ATATTA--AATA--AATTA-A-TTGTCGTT-TA-TTTC-TCA--GAG-AGT-TA-AA--ACAAATTAT-T-----T-T--A--------------ATT-------GGGGAG---GGGG----GG-G-G-----G--GC--------------------------------------T---------C---A-G-T-GTC--A-A-TCA-TTTAA-A
gi|35 : ------------------AAATA-TA----TAAAAATTCT-C---AA--TAATG-ATATTA--AATA--AATTA-A-TTGTCGTT-TA-TTTC--TA--GCG-AGT-TA-AA--ACAAATTAT-T-----T-TAA----------------------TTGGGAGGG---GGGG----GG-G-G-----C------------------------------------------T---------C---A-G-T-GTC--A-A-TCA-TTTAA-A
gi|36 : ACTATCTGTGGCAA--------------------------------TTTC---C-ACTG---G--GTAA--AT---AACAATTTTACCCT--TTG-T-GAAAGGGC-GT--ATT-----TTCTTCCTTTAGCCCGACGACTTGC----ATCAAAC
gi|38 : cagttcgcaaaactggttctAGCCACC-TCGAAGTGTAGATGAAGGCGGGACTCTTTCT-AGGATTT-GAC-GGTTA--A-GGGG---ACA---ACTT--TATGGA-------TGAGG--CAAGGGGTCT--GAGGGAATA
gi|39 : -------TGAGTCCTGCGGGGA----GAGGGAAAA-----TCCTAGA---------------------TTTTA-CA----------AGAG-TAGA---AGTTGAAGAAGTTGACTACTC----CCATGTAGTCA-TTTTTAA-TATTTT-CTat
gi|4 : C-TCGA--A-CAGG----GGCGGA------TCT-AGGATTT-GA--GTTTA-TA-GGGG
gi|4 : TTAATGAGGT--GAAATTAATAAAA--TGA-C-A-C---AAAA----TTTATGAGGT----------------------TTTTT-----------------------TT-------T------TT--------------------------TA-AA----TATAAA--------------GGAA-TTA--A-TAGTA--A----------------------C-AAA--AA--AGT-CG-AA--AATAATTAT-TTTAA-TATATA--------------ATGT---GTAGAGGGC---GCCG----GG-T-G-----C--GC----------------A-----------------C-CGT---------CTAAATC-T-GCA--G-A-TAA-TTCAA-AGTA-G-AGCTGG-TTTG-ATA-TCCAA-TC--AG-AT-ATACATGT----A--GGC-A-TG---ACCTTTCaactgaggggtctgtnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnttaatgaggtgaaattaataaaatgacacaaaatttatgaggttttttttttttaaatataaaggaattaatagtaacaaaaaagtcgaaaataattattttaatatataatgtgtagagggcgccgggtgcgcaccgtctaaatctgcagataattcaaagtagagctggtttgatatccaatcagatatacatgtaggcatgacctttc
gi|40 : ctcgaacaggggcggatctaggatttgagtttataggggaactgaggggtctgtnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnTTTTTAATGAGGT--GAAATTGATAAGA--TGA-C-A-C----AAT----TTTAAGAA------------------------TTTTT-----------------------T-------------------GGA------------------AAA-A-AA----TATAAGTTCTAA-C-AA--TA
gi|43 : tttcagtactctaa-----GTTTCAAAC-CCTG---G--G-AA--AT---GACAAGTTGACCCT--GTG-TAAAAAGGGT-TT--ACT-----TATTTCCTCTCGCCC
gi|44 : -----ATGT------CTC----CCATGTAGTCA-TTTTCAA-TATTTT------A-TTTTTTATAAGGT--GAAAATGATAAAC--TGA-C-A-C---Atg
gi|45 : GA--T-CAAG----GACGAG------TCC-AGGATTT-GA--GATTA-GATGCGGG-CGCA---ACTT--T----A-------TAAGGC
gi|46 : acg-AA-TGTGAA--------------TTTC---TTTGGGGGG---GGGG----GG-G-G-----G--GC----------------A------A-------ATTT-CG----------A---A-C-T-GTA--A-A-TAA-TTTAA-Aagg
gi|47 : T-CTGTAATTTTTTTACTGGGA--AAAATTAATTAAA--TTA-C-A-C---A
gi|5 : aagagaggtccgccgAA----TTTAAA-----------------------------TT-----------------------TT-------T------TTG----------------------AAA-A-AA----T-TA---TCT-C---AA--TAAAA-GTA--A-CAATA--CGTCA-A-TTAACGTT-TA-ACTG-AGA--GAG-AGT-CG-AA--AATAATGAT-TA-TA-TATGAA--------------AATT---GTAAGGGGG---CGGG----GG-------------C----------------A------G-------G-TTGCGC-------------A-C-C-CCCTAA-A-TCA-TTCAA-AGTA-G-CGACGG-TTTG-GTG-TTCCA-TC--AG-AT-A------C----A--GTC-C-TG---TTCTTTCAAC-CGAA-ACG-TA-G-AC-AATT---TGCAtt
gi|51 : G-TGAG-ACG-TA-G-AT-AATT---TCCATAGG-aaacaaacaacatttgcaatgacaattaannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncattatatgtagcattttccagagttcggcaacttgatacaactattttgccttacc
gi|6 : TTTTTATAAGGT--GAAATTGACAAA---TGAAC-A-C---AAAA----TTTAAGAGGTTTTTAAATATTTATTTATTTATTTTTTG----------------------TT-------T------TTGG----------------------AATAGAA----TATAAATTTT-C-C-AAA-TAAAA-GCA--A-CAATA--ATTCA-A-TTGTCGTT-TA-TTTC-AAN--NNN-NNN-NN-NN--NNNNNNNNN-NN-NN-N-NNNNNNNNNNNNNNNNNNATTTAATTTAGGGGGC---ACCG----GG-T-G-----C--GA----------------ACCGCTTA-------A-TC-CTC---------C---A-C-T-GCC--G-A-TCA-TCTAA-CGTA-G-CGCCGG-TCT--ATG-TTCCA-TC--AC-AT-A------C----A--GAC-A-TG---ACCTTTCAAG-TGAG-ACG-TA-G-AT-AGTT---CCCATTGG-TGT-AGactgtctttgaa
gi|7 : --T-CAAA----GGTGGAG-----TCC-AGGATTTTGATTGGT-A-TA-G-----CACACAAACTT--A----AGAGATTCTGAGGCCCTCAGAG-----GA----ATAA--GCTCCAAGAAGCTTCTGAATTTGTAACACATTTTA-TA----------AATGCTAGA---AGT-----ACGT------CCCTAAGCCATGCAGGCA-TTTTAAA-CATTTTACTGTC--TTTTCGATGAAGTTTAGAATTA-TAAAA--TGA-CAA-C---AAAAAATTTTTCATGG------------------------TTTGA-----------------------TT-------T------C-----A------------------AAAGA-AAGACGTGTAAATTgactgtctttg
gi|8 : TTTATTAGGT--GAAATTAATAAAA--TGA-C-A-C---AAAA----TTTAGAGG------------------------TTTTTAAAAAAAATTATTTATCTATTTATT-------T------TTGG----------------------AATA-AA----TATAAATTCT-C-A-AA--TAAAA-GCA--A-CAATA--ATTCA-A-T-GTCGTT-T--TTTC-AAA--A-G-AGTTCT-AA--ACTAATGAT-TA-A------------------------TT---TTAGGGGGACACGGGT----GC-G-AACC--C--GCT---------------A------A-------A-TC--AC---------C---A-C-TAGCC--G-A-TTA-TTCAA-AGTA-G-CGCGGG-TTTG-ATG-TTCCA-TC--AG-AT-A------C----A--GAC-A-TG---ACCTTTCAAG-TGAA-ACG-TAGG-AT-AATT---TCCATAGGCCGT-AGtaattgtttaagtttgaaaaatagagtaaagggggaggggggatgcaaccttctaaatccgtcaactactaaatcca
gi|9 : AATTCT-C-C-AAA-TAATA-GCA--ATCAATA--ATTCA-A-TTGTCGTT-TA-TTT--AAA--AAG-AGT-CCTAA--ACTAATGAT--A-AA-T-------------------ATT------------A---GGTG----CG-A-A-----C--TCCCTT------------A------A-------A-TG-CAC---------C---A-T-T-GCC--G-A-TCA-TTCAA-AGTA-G-CGACGG-GTTG-ATGTTTTCA-TCATAT-AT-A------C----A--G-C-A-TG---ACCT-------------CG-TA---AT-AATT---TTCATAGG-CGT-AGtactgtctt
8 sequences could not be aligned to this reference sequence:
Unaligned ( gi|28 ): GGAGGAAACTTCTCGTAATGCAGACAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGAAAATTAAAGAAAGGTTATCAGAAAACTGAAGGGGACATTACAAATTATAAGTCAGATGC
Unaligned ( gi|31 ): GGATTTCGGGAGAAAATACTCTACTCGATAAACCACGCCCGTTCCGTCACCTGTTCTAAATTTATTATTGGACCTATGGCGCTAGCCTGACTTTAGTCGAAGGCAGTTTGAGAACTGTTTCTACTGCCTGTGTCGAAGGGGAAAAGAAATTC
Unaligned ( gi|37 ): TATTTAAATGGGGGTTATAAACACAAGAAAATTAAGAAAGTAATAGAAAACTGAAGGAGGGGGATGCAATATTATGTTCATATGCAGAAAAATGTATACAAGGGGGGGGGGG
Unaligned ( gi|41 ): GGGGGAGAAATTGAGGAAAACCGGCCTCCACTCAGATCAACAAGCCATTCCGTCGCCTGGTTCTAAAGTTATTTACAAGCGATCG
Unaligned ( gi|42 ): CTGTCTTATGAAGAGGGGGGAGGGGGGCAAACTTCTAAACTATATGCGACACAATGAACCAGAAATTTGATG
Unaligned ( gi|48 ): CTGTGACTTTGATGCAGAAGGGGGGGGGGGTAAACTTCTAAATTATGTGC
Unaligned ( gi|49 ): GCACAGAGTGGTATGGGGGAGAGACCTGTCAAACTTCTAGTATATGGA
Unaligned ( gi|50 ): AGTTCGAGAACCGTTTTACTGTCTGTGGCGATTTCGACTGGGTACA
Alignments
lowQualScore : 1111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111 1111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 333333333333333333333333333333 11 11111 1111 111111 1111 222222222222222 33333 1111 555555555555555555555 3333333333 22222222222 111111 11111 0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 11 3333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333
lowQualScore : 444444444444444444444444444444 777 4 777 55 11 777 55 3 3 44 55 3 00000 0 7 2 9999 3 4 0 7777 4 66 777 777 3 66 2 4444 666666 2 5 66 1111 66 555 333333333333333 66 77777 5555 44 666666666666666666666 5 0000000000 66 22222222222 444444 00000 777 0 4 4 6 6 1 66 33 2 8 444 6666 5555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555 2 5555 33 3 999 00 44 55 1 22 6 1 1 2 2 33 44 2 2 77 22 3333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333 1 1 2 777777777 333 1 3 22 2 2 1 1 2 2 2 2 2 2 2 33 33 2 99999999999 33 0 444 6666 2 66 2 2 3 3 3 555 5 5
lowQualScore : .............................. ... . ... .. .. ... .. . . .. .. . ..... . . . .... . . . .... . .. ... ... . .. . .... ...... . . .. .... .. ... ............... .. ..... .... .. ..................... . .......... .. ........... ...... ..... ... . . . . . . .. .. . . ... .... .............................................................................................. . .... .. . ... .. .. .. . .. . . . . . .. .. . . .. .. .............................................................................................. . . . ......... ... . . .. . . . . . . . . . . . .. .. . ........... .. . ... .... . .. . . . . . ... . .
lowQualScore : 999999999999999999999999999999 000 0 000 55 00 000 00 6 6 00 00 6 00000 8 1 5 4444 4 4 1 9999 4 33 888 888 3 33 7 0000 000000 7 3 88 2222 44 444 777777777777777 00 99999 3333 33 777777777777777777777 7 7777777777 44 66666666666 444444 99999 555 1 4 0 2 9 2 33 77 7 0 777 1111 8888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888 7 7777 22 6 888 55 55 22 9 66 6 9 9 0 0 00 88 0 0 77 99 7777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777 9 9 5 666666666 333 9 8 88 0 0 9 9 2 2 5 2 2 2 4 22 66 4 66666666666 77 6 444 0000 9 55 9 9 1 1 1 444 0 7
consensus : ACTGCCTGTGGCGAAGN-A-----A------AA--NC--T-----GTTTC---C-ACTG---G--GTAA--AT---AACAATTTGACCCT--TTG-T-GAAAGGGC-AT--A-TT-----TTCTTCCTCTAGCCCGGCGACTTGCA----TCAAACTTCTC-TCAGAGAGTT---GGTCAA-AG-A---CA---AAGCCACC-CCGA--T-CAGG----GGCGGA------TCC-AGGATTT-GA--GGTTA-NA-GGGGG-CACA---ACTT--C----A-------TGAGGCCCGCGGGG-----GAGGGGATAG--GCTCCCGGA---------------------TTTTA-CA----------AGAG-TAGA---AGT-----ATGT------CTC----CCATGTAGTC-ATTTTTAA-TATTTT-CTGTCATTTTTTTATGAGGT--GAAATTAATAAAA--TGA-C-AC---AAAA----TTTAAGAG------------------------TTTTT-----------------------TTT------TTGGG--------------------AAAT-A-AA----TATA--AATTCT-C-C-AA--TAAAA-GCA--A-CAATA--ANTC-A-ATTGTCGTT-TA-TTTC-AAA--AAGA-GT-CN-AA--ACTAATGAT-T-A-AA-T-TGAA--------------ATTT---TTAGGGGGG---GGGG----GG-G-G-----C--GC----------------A------AA-TC-CGC---------C---A-CT-GCC--G-AT-CATT-CAA-AGTA-G-CGCCGG-TTTGA-TG-TTCCA-TC--AG-AT-A------C----A--GAC-A-TG---NCC-TTTCAAG-TGAG-ACG-TA-G-AT-AATT---TCCATAGG-CGT-AGC
Reference ( family-325 ) : ACTGCCTGTGGCGAAGN-A-----A------AA--NC--T-----GTTTC---C-ACTG---G--GTAA--AT---AACAATTTGACCCT--TTG-T-GAAAGGGC-AT--A-TT-----TTCTTCCTCTAGCCCGGCGACTTGCA----TCAAACTTCTC-TCAGAGAGTT---GGTCAA-AG-A---CA---AAGCCACC-CCGA--T-CAGG----GGCGGA------TCC-AGGATTT-GA--GGTTA-NA-GGGGG-CACA---ACTT--C----A-------TGAGGCCCGCGGGG-----GAGGGGATAG--GCTCCCGGA---------------------TTTTA-CA----------AGAG-TAGA---AGT-----ATGT------CTC----CCATGTAGTC-ATTTTTAA-TATTTT-CTGTCATTTTTTTATGAGGT--GAAATTAATAAAA--TGA-C-AC---AAAA----TTTAAGAG------------------------TTTTT-----------------------TTT------TTGGG--------------------AAAT-A-AA----TATA--AATTCT-C-C-AA--TAAAA-GCA--A-CAATA--ANTC-A-ATTGTCGTT-TA-TTTC-AAA--AAGA-GT-CN-AA--ACTAATGAT-T-A-AA-T-TGAA--------------ATTT---TTAGGGGGG---GGGG----GG-G-G-----C--GC----------------A------AA-TC-CGC---------C---A-CT-GCC--G-AT-CATT-CAA-AGTA-G-CGCCGG-TTTGA-TG-TTCCA-TC--AG-AT-A------C----A--GAC-A-TG---NCC-TTTCAAG-TGAG-ACG-TA-G-AT-AATT---TCCATAGG-CGT-AGC
gi|1 : ACTGCTTTTGGTGAAGGGA-----A------AA--TA--T-----GATTC---C-ATTG---G--GTAA--AT---AACAACTTGACCCT--TTG-T-GAATGGGT-AT--A-TT-----TTC--CCTCT--CCCTGTGGCTTGCA----TCAAACTTCTT-TCTGAGAGTT----GTC-A-AG-A---CG---AGGCTGCC-CCGA--T-CAGT----GGCGGA------TCC-AGGATTT-GA--GGTTA------GCG-CACA---ACTT--C----AGGAGATCTGAGTCCCTCAG---------AGGGCTAG--GCTCCTTGA---------------------TTTTA-C-----------AGAT-TTTATTTA-T-----ATGT------CTC----TCACTTAATA-ATTTTTTA-TATTCT-CTGTCA--TTTTGATGAGAT--G-GACTGATAAAAATTGG-CAACAAAAAAA----ATTAAG------------------------------T-----------------------TTT------CTGGG--------------------GGAA-A-AA----TATATCAATTTT-C-CTAA--TAAAG-GTA--A-CAAGA--AATC-A-AATGTGGTT-TA-TTAC-AGA--GAAA-GT-TG-AA-----AATAAT-T-A-GT-T-TGAA--------------A--A---TAATGGGTG---AGGG----TG-T-G-----C--ACCCTCT-----------A------AA-TC-CGC---------C---A-CT-ACC--G-AT-CATT-CAA-AGTA-G-CGCCGG-TTTGA-TG-TTCCA-TC--AG-AT-A------C----A--GGG-A-TG---C----TGCAAC-TGAG-------------AATT---TCCA
gi|10 : gggggggggctatactcggattaacacacgcctttccgtcattaaatttagtgaccagtgatcgatttcagactattgagaattgttttcactaactgtttctAAATTTCTC-TGAGAATGCT---GGTCAA-AC-A---CA---AAACAACC-TTGA--C-CAGG----GGAGGA------TCC-AGGACTT-GA--TATTA-GA-GGAGC-GAAA---ATTT--T----A-------AGAGGCataaggccagcgtttgcaacgacaattagnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngtaaaattctccagatttcaataacctgatgcaatcactattttgccc
gi|10 : TTTA-CA----------CGGT-TAAA---AGT-----ATAT------CTT----TCATGTGGTC-ATTTTTAA-TATTTT--TCTCATTTTTT------------GATT-------------C-AC---AAAA----TGTAACA----------------------------TT-----------------------TTT------TTA---------------------------A-AA----CATG--AATTTT-TAT-GA--TCAAT-GTC--A-CAATA--AATC-A-AATGagggtgtctgtggtccctagagatttaaaataccgaaagcctcttgtaaagcatttacacggttaaaagtatatctttcatgtggtcatttttaatatttttctcattttttgattcacaaaatgtaacatttttttaaaacatgaatttttatgatcaatgtcacaataaatcaaatgatg
gi|11 : aaatttctctgagaatgctggtcaaacacaaaacaaccttgaccaggggaggatccaggacttgatattagaggagcgaaaattttaagaggcagggtgtctgtggtccctagagatttaaaataccgaaagcctcttgtaaagcaTGACGAAGC-AGTTCGA------AA--AC--T-----GTTTC---CTACTG---G--CCAGCCATGGCAACAATTAACCCCT--TTGTT-AAAAAGGCTAT--A-TT-----TTC--CCTCTCGCCCTGCGGTTCATA----T-AAACTTCTC-TC-GAGAATT---AGTCAA-AGAA---CA---AAGCCACCTTCGA--T-CAGGC---GCCGGA------TCT-AGGATTT-AA--TGTTACGA-GGGGG-CACA---ACTT--C----atg
gi|12 : ccggtgatT--AAAATTAATACAT--TGA-C-AC---AAAA----T----G------------------------------------------------------TTT------TTGAT--------------------AAAA-A-AA----TATA--GATTCT-CAA-AA--TAAAA--TA--A-CAATA--AATC-A-ATCGTCGTT-TA-TTTC-------AGA-GT-CG-AA--AATAATAAT-CAA-AA-TATGAA--------------ATTA---T------------AGG----TG-G-G-----C--GCAACCTTT---------A------AA-TC-TGC---------C---A-CT-ACC--G-GT-CATT-CAA-ATCA-G-CACTAG-TTTGA-TG-TTCCT-TC--AG-AT-A------C----A--GGC-C-TA---TCC-TTTTAAC-TGAG-ACG-TA-G-AC-AATT---CCcagggatcagatagcaagccacacctaaattgcttagttctacagtacaaaacactagcgatgaaa
gi|13 : TCT-C-C-AA--ATAAA-GCA--A-CAATA--ATTC-A-A-TGCAGTT-TA--TTC-TAA--AAGA-GT-CT-AA--A-TAATG-----A-AA-T-------------------ATTT---T-------------------AG-G-GCCTCCC--GT----------------A------AA-TC---C---------C---A-C--G---------CATT-CAA-AGTA-G-CA-CGG-TTT-A-CG-TTCAA-T------AT-A-----------A--GACAA-TG---ACC--TTCAA--TGAG-AC-----G-AT-AATT---TCaaaactcccaccggttgcaatgaaaatta
gi|14 : aACTGCTTGTGGCGAAGA-A-----A------AAATTC--T-----GTTTC---C-ACTG---G--GTAGATAT---AACAATTAGACCCTAAATG-T-GAAAGGGT-AT--A-aaggtcggactgcttttgagagaggggggaggggggaaacttctagtaatgcgacagcgcaaaaatcaaaagcctaatggaacactaaat
gi|15 : gagaaaattttaatcggataaacacagccgttccgtcgaatggtttttaatttatttaacaggaattttatatgctataaataaaagcaataaattttccttattggcatctaggctagcgaagactaaaacgtcgaagatgttcgagaactaattct--T-CAAA----GGTGGA------TCCCAGGATTTTGA--GGTTG-A---GCAC-CACA---ACTT--A----A-------GGAGATCC
gi|15 : C-ATTTTAAAACATTTT-C-GTCATTTTCGGATGAGTTA-GAATTTAATAAAA--T-A-C-AC---AAAA----agaggcctcagctacgggataacgcttccaagaagtgcttctgatattgtacacattttattaaagctaccgaaagtcaccaaagtccttaagagcatgaccagcgacattttaaaacattttcgtcattttcggatgagttagaatttaataaaatacacaaaaaaatt
gi|16 : tcaaaggtggatcccaggattttgaggttgagcaccacaacttaaggagatccagaggcctcagctacgggataacgcttccaagaagtgcttctgatattgtacacattttattaaagctaccgaaagtcaccaaagtccttaagagcatgaccagcgaACTACCTTTGGCAAAAT-A-----A------AA--CC--T-----GTTTC---C-ACTG---G--GTAA--AT---AACAATTTGACTCT--TTG-T-GAAAGGGC-AT--AATTATATGTTCTTCCTCTAGCCCGGCGACCTGCAAGAATCAAACTTCTC-TCAAAGAGTT---GATCAA-AG-A---AA---AAGTCACC-CCGA--T-CAGG----CGCGGA------TCC-AGGATTT-aaatt
gi|17 : ttttagatattgaagaagcaggccgagaaaaccaggttctat--AATTCT-C-C-AAAATAAAAAGCA--A-CAATATAATTC-A-ATTGTCGTT-TA-TTTT-CAA--AAAA-GT-CT-AA--ACTAATGAT------------AA--------------ATTT---T------AG---GTGC----GA-G-C-----C--GCTA--------------A------AA-TC-CAC---------C---A-CT-GCC--G-AT-CATT-CAA--GTA-G-CGACG--TTTGAATG-TTTCA-TC--AT-AT-A------T----ACTGAC-A-TG---ACCCTTTCAAG-TGAG-ACG-TA-G-AT-AATT---TTCATAGG-CGT-AG
gi|18 : TTT-C-C-AAAATAAAA-GCA----CAATA--ATTC-A--TTGTCGTT-TA-TTTA-AAA--AAGA-GT-CGTAA--ACTAATGAT------------AA--------------ATTT---T-----------AGTT----GG-A-A-----CCAGC----------------T------AA-TC-C-C---------C---A-CT-GCT--G-CT-TATT-CAA-AGTA-GTCGACAC-TTTGA-TG-TTTCAGTC--AT-ATGA------CCTGTA--GAC-AGTG---AC---TTCAAG-TGAG-ACG-TA-G-AT-AATT---TCCATA-G-CGT-gttactgtctttga
gi|19 : GGGACAG---CTCCCGGA---------------------TTTTAGCAGAGTTTATAAAGAG-TAGA---AGT-----ATGT------CTT----CCATGTTGTTAACTTGTAA-TATTTT-CTGTCATTTTAT--TGAGGT--GAAATTAATAAAA--TGA-CAAC---A---------------------------------------TTTTT-----------------------CTT------TT--A--------------------AAATAA-AA----TATC--AATTCTCC-C-AA--T-AAT-GCA--A-CATAA--ACTCAA-ATTGTCGTTCTA-TTTC-AAAG-AAGA--T-CG-Ataggactgtatttga
gi|2 : tccaattACTACCTGTGGCGAAAA-A-----A------AA--CC--TTTAGTGTTTC---C-AATG---G--GTAA--AA---AACAATTTGACCCT--TTG-T-GAAAAGGT-AC--A-TT-----T--TTCCTCTCGCCCTGCAACTTGCA----TCAAACGTCTC-TCAGAGCGCT---GG-CAA-A--A---CA---AAGCCACC-CCGA--T-C-GG----GGCCGA------TCC-AGGATTT-GA--GGTTA-GA-GGGGGCCGCA---ACTT--T----A-------TAAGACAAG-GGGGCT---GAGGGGAT
gi|2 : ttctgggagaaaaatggggaaaaactattcggatcgacacaccgtagcgtcgcctgattctaaactatttaccacccattgatttccggttattgacaaagaagttcaagaactgtttccTCGTT-TA-TTTC-TCA--GACA-GT-CG-AACAAAAAATGAT-T-A-GA-TATGAA--------------AATT---TTAGGGGGG---GGGG----GGCA-G-----C--ACCGAGTATGCCTCCTCTA------AA-TT-CAC---------C---A-CT-GCC--G-AT-CAAT-CAA-AGTA-G-CACCGG-TTTGA-TG-TTTCA-AC--AG-AT-A------catagggctgaattcgtttatttctcagacagtcgaacaaaaaatgattagatatgaaaattttaggggggggggggcagcaccgagtatgcctcctctaaattcaccactgccgatcaatcaaagtagcaccggtttgatgtttcaacagatannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngccagcgtttgcaatgacaattannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntcagttataaataattatatgtagcattttccagagttcggcaa
gi|20 : ttctgggagaaaaatggggaaaaactattcggatcgacacaccgtagcgtcgcctgattctaaactatttaccacccattgatttccggttattgacaaagaagttcaagaactgtttccactacctgtggcgaaaaaaaacctttagtgtttccaatgggtaaaaaacaatttgaccctttgtgaaaaggtacatttttcctctcgccctgcaacttgcatcaaacgtctctcagagcgctggcaaaacaaagccaccccgatcggggccgatccaggatttgaggttagagggggccgcaactttataagacaagggggctgaggggatcatagggctgaatACTGCTTG-GGTGAAAA-A-----ACCCCAAAA--GCACT-----GTTTC---C-ATTG---G--GTAG--AT---GATAATTTGAATAA--TTG-T-GAAA-GGC-ATCAA-TT-----TTCTnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngccagcgtttgcaatgacaattannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntcagttataaataattatatgtagcattttccagagttcggcaa
gi|20 : accagcgatcgactaccggttatagacgaagcagcattctGCA----TCAATTTTCTC-CCAAAGACTT---CGTTAA-AG-A---CA---AAGGCACT-TCGA--T-CAGG----GGCGGA------TGT-AGAATTT-G---GGT---------GG-CACA---TCTT--T----A-------Tcccaaagacttcgttaaagacaaaggcacttcgatcaggggcggatgtagaatttgggtggcacatctttatt
gi|21 : accagcgatcgactaccggttatagacgaagcagcattctactgcttgggtgaaaaaaccccaaaagcactgtttccattgggtagatgataatttgaataattgtgaaagATTCT-C-C-AA--TAAA--GCA--A---------TTC-A-ATTGTCGTT-TACTTTC-AAA--AAGA-GT-CT-AA--ACTAATGAT------------AA--------------ACTT---TTAGGTG------------------------C--G-------------------------A-CC-CGCTTAGAATTAC---A-CT-GC---G-AT-C-TT-CAA-AGTA-G-CGACGG-TTTGA-TG-TT-TA-TC--AT-AT-A------C----A--GAC---TG---ACT-TT---AG-TGAGAACG-TA-GAAT-AAGTAAGTCCATAGt
gi|22 : TAT-AGGT--GAACTTAATAAAA--CGA-C-AC---GAAA----TTTAATAG------------------------TTTTT-----------------------TTTTTTT--TTTTT--------------------AATT-A-TT----TATC--AATTTT-G-G-AA--TAAA---------TAATA--A------ATTCTC----------C-AAATAAAAA-GC-----A--AC-AATAAT-T-C-AA-T----------------------------AGGGGAC---AACC----GA-CTG-----C--GA----------------A------AC-CC-CGC---------T---A-A-------G-AT-CATT-CAA--GTA-G-CGCCGGTTTTAA-TG-TTTCA-TC--AG-AT-A------ttggactgtctttta
gi|23 : C-CCGA--T-CAGG----CGCGGA------TCC-ATGATTT-GA--GGTTA-CA-GGGGA-CAAA---ACTT--C----A-------TGAGG
gi|24 : TT-CAA-AGTACG-CGCAGG-TT-GA-TG-TTCCG---------------------------------G---TCC-TTTCAAACTGAG-GCGTTA-G-AA-AATT---TCCAAATA-CGTCAGCgaagaggtctgacnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnttgatgaggtgaaattaatgaaa
gi|25 : T--TTG-T-GA--GGG--AT--A-TT-----CTTTTACT--------ACGGCTTGCA----TCAA--TTTTAATCATCGAGTTCTTGGTCAACAA-AGCTCACTTAAGCCACC-TCGAA-T-GAGGTGAAGGCGGGATTT--TCT-AGGATTT-GA--GGTTT-AA-GGGGG--ACA---ACTTAGG----A-------TGAGTCGCAAGGGGGTCTCGAGGGAATAatggtcagtgacaattannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnagtatatgtaacattttccacaga
gi|26 : tttaggca-----GTTTC---T-ACTGCCTGTTATAA--AT---AACAATTTGTCCAT--ATG-T-GAAAGGGC-AT--T-TT-----TTCTTCCTCTAGCCTGGCGACTTGCA----TCAA--TTCTC-TCAGAGAGTT---GATGAA-AG-A---CA---AGTCCACC-CCGA--T-CAGG----CGCGGA------TCC-ATGATTT-GA--GGTTA-CA-GGGGA-CAAA---ACTT--C----A-------TGAGGat
gi|27 : TTCT-C-A-AA--TAAA---CC--A-CAATA--A-TC-A--TAGTCGTT-TA-TTTCGAAA--AAGA-GT-CTTAA--ACTAATGATGT-A--------------------------TT---TTAGGTGCG---AAAC----C----------C--GCT---------------A------AA-TC-CAC---------C---A-CT-GCC--GGAT-CATT-CAAGAGTA-G-CGACAG-TTTGA-TG-TTTCA-TC--AATAT-A------C----A--GAC-A-TGGGATCC-TTTCAAG-TGA--ACG-Tgaagagg
gi|29 : atAA--GCTCCTGGA---------------------ATTTA-CAG---------ATAT-TATA---AG--------GT------TT------------G---AATTTCAA-TATTTT-CTTTCACTTTTTTATGAGGT--GAAACTGATGAAA--TGA-C-AC---TAAG----TTTAAGGA----------------------------T-----------------------TTC------TTGGG--------------------GGA--A-AA----TAT---GATTTG-C-A-AA--TATAA-GTA--A-CTAGA--AACC-A-A
gi|3 : tcaagggccgACTGACTGTGGCGAATT-A-----A------TA--TT--T-----GTTTC---C-ACTG---G--GTAA--AT---AATAATTTGACCCT--TTG-T-GAAAGGGC-AT--G-CT-----TTCTTTTTCTAGCCCGGCGAATAGCA----TCAAACCTCTC-TCAGAGA--T---GATAAA-AA-A---CA---AAGCCACC-CCGA--T-CAGG----CGCGGA------TCC-AGGATTG-GA--GGTTA-CA-CGGGA-TAAA---ACTT--C----A-------TGAGGCCCGCGGGG-----GAGGGGGTGGCAGCTCTCAGA---------------------TTTTA-TA----------AGAG-TAGA-----------ATGT------CTC----CTATGTAGT--ATTTTTAA-TATATA-CTGTCATTTTTTTATGAGGC--GAAATTAATAAAA--CGA-C-AC---AAAA----TTTAAGAG------------------------TTTTG-----------------------TTTGGATTGTTGGGGGGGGGGGGGTTGGGGGGGTAAAT-A-AC----TATA--CATTCT-C-C--A--TAAAA-GCA--A-CAATA--AATC-ATATTGTCGTT----TCTC-AAA--AAGA-GT-CG-AA--ACTATTGAT-T-A-AATT-TGAA--------------ATTT---TTAGGGGGG---GGGG----GG-G-G-----G--GC----------------A------AA-TC-CGC---------C---A-CT-GCC--G-AT-CATT-CAA-AGTA---CGCCGG-TTCGA-TG-GTCCA-TC--AG-AT-A------C----A--GAC-A-TA---TAC-TTTCAAC-TGAG-ACG-TA-G-ATAAATT---TCCA-AGA-CGC-AGC
gi|30 : -C-C-AA--ATAAA-GCA--A-ACATA--ATTC-A-ATTTCCGTT-TA-TTTC-AAA--AAGAAGT-CT-AA--ACTGATGAT-T-G-CA-G-TTAG--------------GTTT---------------GCGT----AA-C-C-----C--GCT---------------A------AA-AC-CAC---------C---A-CTTGCC--G-ATTCATTTCAA-AGTA-G--ACCAG-TTTGA-TG-T-CCA-TC--AG-AT-A------C----A--GAC-A-T
gi|32 : ttaAA--------------ATTT---A-AGGGGGG---GGGGCGCCGG-T-G-----C--GCCCACCCCTT-------A------AA-TC-CGC---------C---A-CT-t
gi|33 : gatatataatctttataaaactaagagggggcgccgtgtgtaatttattaattttttcagtgaaaaataagattatatataatacacttggtTCT-C-C-AAG-TAAAA-GCA--A-CAATA--ATTC-A-ATTGTCTTT-TC-TTTC-AAA--AAGA-GT-AT-AA--ACTAATTAT-T-A-A------------------------TT---TTAGGTGCG---AACC---------------C--GCT---------------A------AA-TC-CAC---------C---A-CT-GCC--G-AT-CATT-CAA-AGTA-G-CGACGG-TCTGA-TG-TTC
gi|34 : --------------------AAAT-A-TA----TAAA--AATTCT-C---AA--TAATG-ATATTA--AATA--AATT-A-ATTGTCGTT-TA-TTTC-TCA--GAGA-GT-TA-AA--ACAAATTAT-T------T-T--A--------------ATT-------GGGGAG---GGGG----GG-G-G-----G--GC-------------------------------T---------C---A-GT-GTC--A-AT-CATT-TAA-A
gi|35 : --------------------AAAT-A-TA----TAAA--AATTCT-C---AA--TAATG-ATATTA--AATA--AATT-A-ATTGTCGTT-TA-TTTC--TA--GCGA-GT-TA-AA--ACAAATTAT-T------T-TAA----------------------TTGGGAGGG---GGGG----GG-G-G-----C-----------------------------------T---------C---A-GT-GTC--A-AT-CATT-TAA-A
gi|36 : ACTATCTGTGGCAA--------------------------------TTTC---C-ACTG---G--GTAA--AT---AACAATTTTACCCT--TTG-T-GAAAGGGC-GT--A-TT-----TTCTTCCTTTAGCCCGACGACTTGCA----TCAAAC
gi|38 : cagttcgcaaaactggttctAGCCACC-TCGAAGTGTAGATGAAGGCGGGACTCTTTCT-AGGATTT-GAC-GGTTA--A-GGGG---ACA---ACTT--TATGGA-------TGAGG--CAAGGGGTCT--GAGGGAATA
gi|39 : -------TGAGTCCTGCGGGGA----GAGGGAAAA-----TCCTAGA---------------------TTTTA-CA----------AGAG-TAGA---AGTTGAAGAAGTTGACTACTC----CCATGTAGTC-ATTTTTAA-TATTTT-CTat
gi|4 : C-TCGA--A-CAGG----GGCGGA------TCT-AGGATTT-GA--GTTTA-TA-GGGG
gi|4 : TTAATGAGGT--GAAATTAATAAAA--TGA-C-AC---AAAA----TTTATGAGGT----------------------TTTTT-----------------------TTT------TT--------------------------T-A-AA----TATA--AA--------------GGAA-TTA--A-TAGTA--A----------------------C-AAA--AA-A-GT-CG-AA--AATAATTAT-T-TTAA-TATATA--------------ATGT---GTAGAGGGC---GCCG----GG-T-G-----C--GC----------------A----------C-CGT---------CTAAATCT-GCA--G-AT-AATT-CAA-AGTA-G-AGCTGG-TTTGA-TA-TCCAA-TC--AG-AT-ATACATGT----A--GGC-A-TG---ACC-TTTCaactgaggggtctgtnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnttaatgaggtgaaattaataaaatgacacaaaatttatgaggttttttttttttaaatataaaggaattaatagtaacaaaaaagtcgaaaataattattttaatatataatgtgtagagggcgccgggtgcgcaccgtctaaatctgcagataattcaaagtagagctggtttgatatccaatcagatatacatgtaggcatgacctttc
gi|40 : ctcgaacaggggcggatctaggatttgagtttataggggaactgaggggtctgtnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnTTTTTAATGAGGT--GAAATTGATAAGA--TGA-C-AC----AAT----TTTAAGAA------------------------TTTTT-----------------------T-----------GG--------------------AAAA-A-AA----TATA--AGTTCTAA-C-AA--TA
gi|43 : tttcagtactctaa-----GTTTCAAAC-CCTG---G--G-AA--AT---GACAAGTTGACCCT--GTG-TAAAAAGGGT-TT--A-CT-----TATTTCCTCTCGCCC
gi|44 : -----ATGT------CTC----CCATGTAGTC-ATTTTCAA-TATTTT------A-TTTTTTATAAGGT--GAAAATGATAAAC--TGA-C-AC---Atg
gi|45 : GA--T-CAAG----GACGAG------TCC-AGGATTT-GA--GATTA-GATGCGGG-CGCA---ACTT--T----A-------TAAGGC
gi|46 : acg-AA-TGTGAA--------------TTTC---TTTGGGGGG---GGGG----GG-G-G-----G--GC----------------A------AATTT-CG----------A---A-CT-GTA--A-AT-AATT-TAA-Aagg
gi|47 : T-CTGTAATTTTTTTACTGGGA--AAAATTAATTAAA--TTA-C-AC---A
gi|5 : aagagaggtccgccgAA----TTTAAA-----------------------------TT-----------------------TTT------TTG----------------------AAA--A-AA----T-TA-----TCT-C---AA--TAAAA-GTA--A-CAATA--CGTC-A-ATTAACGTT-TA-ACTG-AGA--GAGA-GT-CG-AA--AATAATGAT-T-A-TA-TATGAA--------------AATT---GTAAGGGGG---CGGG----GG-------------C----------------A------GG-TTGCGC-------------A-CC-CCCTAA-AT-CATT-CAA-AGTA-G-CGACGG-TTTGG-TG-TTCCA-TC--AG-AT-A------C----A--GTC-C-TG---TTC-TTTCAAC-CGAA-ACG-TA-G-AC-AATT---TGCAtt
gi|51 : G-TGAG-ACG-TA-G-AT-AATT---TCCATAGG-aaacaaacaacatttgcaatgacaattaannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncattatatgtagcattttccagagttcggcaacttgatacaactattttgccttacc
gi|6 : TTTTTATAAGGT--GAAATTGACAAA---TGAAC-AC---AAAA----TTTAAGAGGTTTTTAAATATTTATTTATTTATTTTTTG----------------------TTT------TTGG----------------------AAT-AGAA----TATA--AATTTT-C-C-AAA-TAAAA-GCA--A-CAATA--ATTC-A-ATTGTCGTT-TA-TTTC-AAN--NNNN-NN-NN-NN--NNNNNNNNN-N-N-NN-N-NNNNNNNNNNNNNNNNNNATTTAATTTAGGGGGC---ACCG----GG-T-G-----C--GA----------------ACCGCTTAA-TC-CTC---------C---A-CT-GCC--G-AT-CATC-TAA-CGTA-G-CGCCGG-TCT-A-TG-TTCCA-TC--AC-AT-A------C----A--GAC-A-TG---ACC-TTTCAAG-TGAG-ACG-TA-G-AT-AGTT---CCCATTGG-TGT-AGactgtctttgaa
gi|7 : --T-CAAA----GGTGGAG-----TCC-AGGATTTTGATTGGT-A-TA-G-----CACACAAACTT--A----AGAGATTCTGAGGCCCTCAGAG-----GA----ATAA--GCTCCAAGAAGCTTCTGAATTTGTAACACATTTTA-TA----------AATGCTAGA---AGT-----ACGT------CCCTAAGCCATGCAGGC-ATTTTAAA-CATTTTACTGTC--TTTTCGATGAAGTTTAGAATTA-TAAAA--TGA-CAAC---AAAAAATTTTTCATGG------------------------TTTGA-----------------------TTT------C---A--------------------AAAG-A-AAGACGTGTA--AATTgactgtctttg
gi|8 : TTTATTAGGT--GAAATTAATAAAA--TGA-C-AC---AAAA----TTTAGAGG------------------------TTTTTAAAAAAAATTATTTATCTATTTATTT------TTGG----------------------AAT-A-AA----TATA--AATTCT-C-A-AA--TAAAA-GCA--A-CAATA--ATTC-A-AT-GTCGTT-T--TTTC-AAA--A-GA-GTTCT-AA--ACTAATGAT-T-A-A------------------------TT---TTAGGGGGACACGGGT----GC-G-AACC--C--GCT---------------A------AA-TC--AC---------C---A-CTAGCC--G-AT-TATT-CAA-AGTA-G-CGCGGG-TTTGA-TG-TTCCA-TC--AG-AT-A------C----A--GAC-A-TG---ACC-TTTCAAG-TGAA-ACG-TAGG-AT-AATT---TCCATAGGCCGT-AGtaattgtttaagtttgaaaaatagagtaaagggggaggggggatgcaaccttctaaatccgtcaactactaaatcca
gi|9 : --AATTCT-C-C-AAA-TAATA-GCA--ATCAATA--ATTC-A-ATTGTCGTT-TA-TTT--AAA--AAGA-GT-CCTAA--ACTAATGAT---A-AA-T-------------------ATT------------A---GGTG----CG-A-A-----C--TCCCTT------------A------AA-TG-CAC---------C---A-TT-GCC--G-AT-CATT-CAA-AGTA-G-CGACGG-GTTGA-TGTTTTCA-TCATAT-AT-A------C----A--G-C-A-TG---ACC-T-------------CG-TA---AT-AATT---TTCATAGG-CGT-AGtactgtctt
8 sequences could not be aligned to this reference sequence:
Unaligned ( gi|28 ): GGAGGAAACTTCTCGTAATGCAGACAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGAAAATTAAAGAAAGGTTATCAGAAAACTGAAGGGGACATTACAAATTATAAGTCAGATGC
Unaligned ( gi|31 ): GGATTTCGGGAGAAAATACTCTACTCGATAAACCACGCCCGTTCCGTCACCTGTTCTAAATTTATTATTGGACCTATGGCGCTAGCCTGACTTTAGTCGAAGGCAGTTTGAGAACTGTTTCTACTGCCTGTGTCGAAGGGGAAAAGAAATTC
Unaligned ( gi|37 ): TATTTAAATGGGGGTTATAAACACAAGAAAATTAAGAAAGTAATAGAAAACTGAAGGAGGGGGATGCAATATTATGTTCATATGCAGAAAAATGTATACAAGGGGGGGGGGG
Unaligned ( gi|41 ): GGGGGAGAAATTGAGGAAAACCGGCCTCCACTCAGATCAACAAGCCATTCCGTCGCCTGGTTCTAAAGTTATTTACAAGCGATCG
Unaligned ( gi|42 ): CTGTCTTATGAAGAGGGGGGAGGGGGGCAAACTTCTAAACTATATGCGACACAATGAACCAGAAATTTGATG
Unaligned ( gi|48 ): CTGTGACTTTGATGCAGAAGGGGGGGGGGGTAAACTTCTAAATTATGTGC
Unaligned ( gi|49 ): GCACAGAGTGGTATGGGGGAGAGACCTGTCAAACTTCTAGTATATGGA
Unaligned ( gi|50 ): AGTTCGAGAACCGTTTTACTGTCTGTGGCGATTTCGACTGGGTACA
Alignments
lowQualScore : 1111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111 1111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 333333333333333333333333333333 11 11111 1111 111111 1111 222222222222222 33333 1111 555555555555555555555 3333333333 22222222222 111111 11111 0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 11 3333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333
lowQualScore : 444444444444444444444444444444 777 4 777 55 11 777 55 3 3 44 55 3 00000 0 7 2 9999 3 4 0 7777 4 66 777 777 3 66 2 4444 666666 2 5 66 1111 66 555 333333333333333 66 77777 5555 44 666666666666666666666 5 0000000000 66 22222222222 444444 00000 777 0 4 4 6 6 1 66 33 2 8 444 6666 5555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555 2 5555 33 3 999 00 44 55 1 22 6 1 1 2 2 33 44 2 2 77 22 3333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333 1 1 2 777777777 333 1 3 22 2 2 1 1 2 2 2 2 2 2 2 33 33 2 99999999999 33 0 444 6666 2 66 2 2 3 3 3 555 5 5
lowQualScore : .............................. ... . ... .. .. ... .. . . .. .. . ..... . . . .... . . . .... . .. ... ... . .. . .... ...... . . .. .... .. ... ............... .. ..... .... .. ..................... . .......... .. ........... ...... ..... ... . . . . . . .. .. . . ... .... .............................................................................................. . .... .. . ... .. .. .. . .. . . . . . .. .. . . .. .. .............................................................................................. . . . ......... ... . . .. . . . . . . . . . . . .. .. . ........... .. . ... .... . .. . . . . . ... . .
lowQualScore : 999999999999999999999999999999 000 0 000 55 00 000 00 6 6 00 00 6 00000 8 1 5 4444 4 4 1 9999 4 33 888 888 3 33 7 0000 000000 7 3 88 2222 44 444 777777777777777 00 99999 3333 33 777777777777777777777 7 7777777777 44 66666666666 444444 99999 555 1 4 0 2 9 2 33 77 7 0 777 1111 8888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888 7 7777 22 6 888 55 55 22 9 66 6 9 9 0 0 00 88 0 0 77 99 7777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777 9 9 5 666666666 333 9 8 88 0 0 9 9 2 2 5 2 2 2 4 22 66 4 66666666666 77 6 444 0000 9 55 9 9 1 1 1 444 0 7
consensus : ACTGCCTGTGGCGAAGN-A-----A------AA--NC--T-----GTTTC---C-ACTG---G--GTAA--AT---AACAATTTGACCCT--TTG-T-GAAAGGGC-AT--A-TT-----TTCTTCCTCTAGCCCGGCGACTTGCA----TCAAACTTCTC-TCAGAGAGTT---GGTCAA-AG-A---CA---AAGCCACC-CCGA--T-CAGG----GGCGGA------TCC-AGGATTT-GA--GGTTA-NA-GGGGG-CACA---ACTT--C----A-------TGAGGCCCGCGGGG-----GAGGGGATAG--GCTCCCGGA---------------------TTTTA-CA----------AGAG-TAGA---AGT-----ATGT------CTC----CCATGTAGTC-ATTTTTAA-TATTTT-CTGTCATTTTTTTATGAGGT--GAAATTAATAAAA--TGA-C-AC---AAAA----TTTAAGAG------------------------TTTTT-----------------------TTT------TTGGG--------------------AAAT-A-AA----TATA--AATTCT-C-C-AA--TAAAA-GCA--A-CAATA--ANTC-A-ATTGTCGTT-TA-TTTC-AAA--AAGA-GT-CN-AA--ACTAATGAT-T-A-AA-T-TGAA--------------ATTT---TTAGGGGGG---GGGG----GG-G-G-----C--GC----------------A------AA-TC-CGC---------C---A-CT-GCC--G-AT-CATT-CAA-AGTA-G-CGCCGG-TTTGA-TG-TTCCA-TC--AG-AT-A------C----A--GAC-A-TG---NCC-TTTCAAG-TGAG-ACG-TA-G-AT-AATT---TCCATAGG-CGT-AGC
Reference ( family-325 ) : ACTGCCTGTGGCGAAGN-A-----A------AA--NC--T-----GTTTC---C-ACTG---G--GTAA--AT---AACAATTTGACCCT--TTG-T-GAAAGGGC-AT--A-TT-----TTCTTCCTCTAGCCCGGCGACTTGCA----TCAAACTTCTC-TCAGAGAGTT---GGTCAA-AG-A---CA---AAGCCACC-CCGA--T-CAGG----GGCGGA------TCC-AGGATTT-GA--GGTTA-NA-GGGGG-CACA---ACTT--C----A-------TGAGGCCCGCGGGG-----GAGGGGATAG--GCTCCCGGA---------------------TTTTA-CA----------AGAG-TAGA---AGT-----ATGT------CTC----CCATGTAGTC-ATTTTTAA-TATTTT-CTGTCATTTTTTTATGAGGT--GAAATTAATAAAA--TGA-C-AC---AAAA----TTTAAGAG------------------------TTTTT-----------------------TTT------TTGGG--------------------AAAT-A-AA----TATA--AATTCT-C-C-AA--TAAAA-GCA--A-CAATA--ANTC-A-ATTGTCGTT-TA-TTTC-AAA--AAGA-GT-CN-AA--ACTAATGAT-T-A-AA-T-TGAA--------------ATTT---TTAGGGGGG---GGGG----GG-G-G-----C--GC----------------A------AA-TC-CGC---------C---A-CT-GCC--G-AT-CATT-CAA-AGTA-G-CGCCGG-TTTGA-TG-TTCCA-TC--AG-AT-A------C----A--GAC-A-TG---NCC-TTTCAAG-TGAG-ACG-TA-G-AT-AATT---TCCATAGG-CGT-AGC
gi|1 : ACTGCTTTTGGTGAAGGGA-----A------AA--TA--T-----GATTC---C-ATTG---G--GTAA--AT---AACAACTTGACCCT--TTG-T-GAATGGGT-AT--A-TT-----TTC--CCTCT--CCCTGTGGCTTGCA----TCAAACTTCTT-TCTGAGAGTT----GTC-A-AG-A---CG---AGGCTGCC-CCGA--T-CAGT----GGCGGA------TCC-AGGATTT-GA--GGTTA------GCG-CACA---ACTT--C----AGGAGATCTGAGTCCCTCAG---------AGGGCTAG--GCTCCTTGA---------------------TTTTA-C-----------AGAT-TTTATTTA-T-----ATGT------CTC----TCACTTAATA-ATTTTTTA-TATTCT-CTGTCA--TTTTGATGAGAT--G-GACTGATAAAAATTGG-CAACAAAAAAA----ATTAAG------------------------------T-----------------------TTT------CTGGG--------------------GGAA-A-AA----TATATCAATTTT-C-CTAA--TAAAG-GTA--A-CAAGA--AATC-A-AATGTGGTT-TA-TTAC-AGA--GAAA-GT-TG-AA-----AATAAT-T-A-GT-T-TGAA--------------A--A---TAATGGGTG---AGGG----TG-T-G-----C--ACCCTCT-----------A------AA-TC-CGC---------C---A-CT-ACC--G-AT-CATT-CAA-AGTA-G-CGCCGG-TTTGA-TG-TTCCA-TC--AG-AT-A------C----A--GGG-A-TG---C----TGCAAC-TGAG-------------AATT---TCCA
gi|10 : gggggggggctatactcggattaacacacgcctttccgtcattaaatttagtgaccagtgatcgatttcagactattgagaattgttttcactaactgtttctAAATTTCTC-TGAGAATGCT---GGTCAA-AC-A---CA---AAACAACC-TTGA--C-CAGG----GGAGGA------TCC-AGGACTT-GA--TATTA-GA-GGAGC-GAAA---ATTT--T----A-------AGAGGCataaggccagcgtttgcaacgacaattagnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngtaaaattctccagatttcaataacctgatgcaatcactattttgccc
gi|10 : TTTA-CA----------CGGT-TAAA---AGT-----ATAT------CTT----TCATGTGGTC-ATTTTTAA-TATTTT--TCTCATTTTTT------------GATT-------------C-AC---AAAA----TGTAACA----------------------------TT-----------------------TTT------TTA---------------------------A-AA----CATG--AATTTT-TAT-GA--TCAAT-GTC--A-CAATA--AATC-A-AATGagggtgtctgtggtccctagagatttaaaataccgaaagcctcttgtaaagcatttacacggttaaaagtatatctttcatgtggtcatttttaatatttttctcattttttgattcacaaaatgtaacatttttttaaaacatgaatttttatgatcaatgtcacaataaatcaaatgatg
gi|11 : aaatttctctgagaatgctggtcaaacacaaaacaaccttgaccaggggaggatccaggacttgatattagaggagcgaaaattttaagaggcagggtgtctgtggtccctagagatttaaaataccgaaagcctcttgtaaagcaTGACGAAGC-AGTTCGA------AA--AC--T-----GTTTC---CTACTG---G--CCAGCCATGGCAACAATTAACCCCT--TTGTT-AAAAAGGCTAT--A-TT-----TTC--CCTCTCGCCCTGCGGTTCATA----T-AAACTTCTC-TC-GAGAATT---AGTCAA-AGAA---CA---AAGCCACCTTCGA--T-CAGGC---GCCGGA------TCT-AGGATTT-AA--TGTTACGA-GGGGG-CACA---ACTT--C----atg
gi|12 : ccggtgatT--AAAATTAATACAT--TGA-C-AC---AAAA----T----G------------------------------------------------------TTT------TTGAT--------------------AAAA-A-AA----TATA--GATTCT-CAA-AA--TAAAA--TA--A-CAATA--AATC-A-ATCGTCGTT-TA-TTTC-------AGA-GT-CG-AA--AATAATAAT-CAA-AA-TATGAA--------------ATTA---T------------AGG----TG-G-G-----C--GCAACCTTT---------A------AA-TC-TGC---------C---A-CT-ACC--G-GT-CATT-CAA-ATCA-G-CACTAG-TTTGA-TG-TTCCT-TC--AG-AT-A------C----A--GGC-C-TA---TCC-TTTTAAC-TGAG-ACG-TA-G-AC-AATT---CCcagggatcagatagcaagccacacctaaattgcttagttctacagtacaaaacactagcgatgaaa
gi|13 : TCT-C-C-AA--ATAAA-GCA--A-CAATA--ATTC-A-A-TGCAGTT-TA--TTC-TAA--AAGA-GT-CT-AA--A-TAATG-----A-AA-T-------------------ATTT---T-------------------AG-G-GCCTCCC--GT----------------A------AA-TC---C---------C---A-C--G---------CATT-CAA-AGTA-G-CA-CGG-TTT-A-CG-TTCAA-T------AT-A-----------A--GACAA-TG---ACC--TTCAA--TGAG-AC-----G-AT-AATT---TCaaaactcccaccggttgcaatgaaaatta
gi|14 : aACTGCTTGTGGCGAAGA-A-----A------AAATTC--T-----GTTTC---C-ACTG---G--GTAGATAT---AACAATTAGACCCTAAATG-T-GAAAGGGT-AT--A-aaggtcggactgcttttgagagaggggggaggggggaaacttctagtaatgcgacagcgcaaaaatcaaaagcctaatggaacactaaat
gi|15 : gagaaaattttaatcggataaacacagccgttccgtcgaatggtttttaatttatttaacaggaattttatatgctataaataaaagcaataaattttccttattggcatctaggctagcgaagactaaaacgtcgaagatgttcgagaactaattct--T-CAAA----GGTGGA------TCCCAGGATTTTGA--GGTTG-A---GCAC-CACA---ACTT--A----A-------GGAGATCC
gi|15 : C-ATTTTAAAACATTTT-C-GTCATTTTCGGATGAGTTA-GAATTTAATAAAA--T-A-C-AC---AAAA----agaggcctcagctacgggataacgcttccaagaagtgcttctgatattgtacacattttattaaagctaccgaaagtcaccaaagtccttaagagcatgaccagcgacattttaaaacattttcgtcattttcggatgagttagaatttaataaaatacacaaaaaaatt
gi|16 : tcaaaggtggatcccaggattttgaggttgagcaccacaacttaaggagatccagaggcctcagctacgggataacgcttccaagaagtgcttctgatattgtacacattttattaaagctaccgaaagtcaccaaagtccttaagagcatgaccagcgaACTACCTTTGGCAAAAT-A-----A------AA--CC--T-----GTTTC---C-ACTG---G--GTAA--AT---AACAATTTGACTCT--TTG-T-GAAAGGGC-AT--AATTATATGTTCTTCCTCTAGCCCGGCGACCTGCAAGAATCAAACTTCTC-TCAAAGAGTT---GATCAA-AG-A---AA---AAGTCACC-CCGA--T-CAGG----CGCGGA------TCC-AGGATTT-aaatt
gi|17 : ttttagatattgaagaagcaggccgagaaaaccaggttctat--AATTCT-C-C-AAAATAAAAAGCA--A-CAATATAATTC-A-ATTGTCGTT-TA-TTTT-CAA--AAAA-GT-CT-AA--ACTAATGAT------------AA--------------ATTT---T------AG---GTGC----GA-G-C-----C--GCTA--------------A------AA-TC-CAC---------C---A-CT-GCC--G-AT-CATT-CAA--GTA-G-CGACG--TTTGAATG-TTTCA-TC--AT-AT-A------T----ACTGAC-A-TG---ACCCTTTCAAG-TGAG-ACG-TA-G-AT-AATT---TTCATAGG-CGT-AG
gi|18 : TTT-C-C-AAAATAAAA-GCA----CAATA--ATTC-A--TTGTCGTT-TA-TTTA-AAA--AAGA-GT-CGTAA--ACTAATGAT------------AA--------------ATTT---T-----------AGTT----GG-A-A-----CCAGC----------------T------AA-TC-C-C---------C---A-CT-GCT--G-CT-TATT-CAA-AGTA-GTCGACAC-TTTGA-TG-TTTCAGTC--AT-ATGA------CCTGTA--GAC-AGTG---AC---TTCAAG-TGAG-ACG-TA-G-AT-AATT---TCCATA-G-CGT-gttactgtctttga
gi|19 : GGGACAG---CTCCCGGA---------------------TTTTAGCAGAGTTTATAAAGAG-TAGA---AGT-----ATGT------CTT----CCATGTTGTTAACTTGTAA-TATTTT-CTGTCATTTTAT--TGAGGT--GAAATTAATAAAA--TGA-CAAC---A---------------------------------------TTTTT-----------------------CTT------TT--A--------------------AAATAA-AA----TATC--AATTCTCC-C-AA--T-AAT-GCA--A-CATAA--ACTCAA-ATTGTCGTTCTA-TTTC-AAAG-AAGA--T-CG-Ataggactgtatttga
gi|2 : tccaattACTACCTGTGGCGAAAA-A-----A------AA--CC--TTTAGTGTTTC---C-AATG---G--GTAA--AA---AACAATTTGACCCT--TTG-T-GAAAAGGT-AC--A-TT-----T--TTCCTCTCGCCCTGCAACTTGCA----TCAAACGTCTC-TCAGAGCGCT---GG-CAA-A--A---CA---AAGCCACC-CCGA--T-C-GG----GGCCGA------TCC-AGGATTT-GA--GGTTA-GA-GGGGGCCGCA---ACTT--T----A-------TAAGACAAG-GGGGCT---GAGGGGAT
gi|2 : ttctgggagaaaaatggggaaaaactattcggatcgacacaccgtagcgtcgcctgattctaaactatttaccacccattgatttccggttattgacaaagaagttcaagaactgtttccTCGTT-TA-TTTC-TCA--GACA-GT-CG-AACAAAAAATGAT-T-A-GA-TATGAA--------------AATT---TTAGGGGGG---GGGG----GGCA-G-----C--ACCGAGTATGCCTCCTCTA------AA-TT-CAC---------C---A-CT-GCC--G-AT-CAAT-CAA-AGTA-G-CACCGG-TTTGA-TG-TTTCA-AC--AG-AT-A------catagggctgaattcgtttatttctcagacagtcgaacaaaaaatgattagatatgaaaattttaggggggggggggcagcaccgagtatgcctcctctaaattcaccactgccgatcaatcaaagtagcaccggtttgatgtttcaacagatannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngccagcgtttgcaatgacaattannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntcagttataaataattatatgtagcattttccagagttcggcaa
gi|20 : ttctgggagaaaaatggggaaaaactattcggatcgacacaccgtagcgtcgcctgattctaaactatttaccacccattgatttccggttattgacaaagaagttcaagaactgtttccactacctgtggcgaaaaaaaacctttagtgtttccaatgggtaaaaaacaatttgaccctttgtgaaaaggtacatttttcctctcgccctgcaacttgcatcaaacgtctctcagagcgctggcaaaacaaagccaccccgatcggggccgatccaggatttgaggttagagggggccgcaactttataagacaagggggctgaggggatcatagggctgaatACTGCTTG-GGTGAAAA-A-----ACCCCAAAA--GCACT-----GTTTC---C-ATTG---G--GTAG--AT---GATAATTTGAATAA--TTG-T-GAAA-GGC-ATCAA-TT-----TTCTnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngccagcgtttgcaatgacaattannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntcagttataaataattatatgtagcattttccagagttcggcaa
gi|20 : accagcgatcgactaccggttatagacgaagcagcattctGCA----TCAATTTTCTC-CCAAAGACTT---CGTTAA-AG-A---CA---AAGGCACT-TCGA--T-CAGG----GGCGGA------TGT-AGAATTT-G---GGT---------GG-CACA---TCTT--T----A-------Tcccaaagacttcgttaaagacaaaggcacttcgatcaggggcggatgtagaatttgggtggcacatctttatt
gi|21 : accagcgatcgactaccggttatagacgaagcagcattctactgcttgggtgaaaaaaccccaaaagcactgtttccattgggtagatgataatttgaataattgtgaaagATTCT-C-C-AA--TAAA--GCA--A---------TTC-A-ATTGTCGTT-TACTTTC-AAA--AAGA-GT-CT-AA--ACTAATGAT------------AA--------------ACTT---TTAGGTG------------------------C--G-------------------------A-CC-CGCTTAGAATTAC---A-CT-GC---G-AT-C-TT-CAA-AGTA-G-CGACGG-TTTGA-TG-TT-TA-TC--AT-AT-A------C----A--GAC---TG---ACT-TT---AG-TGAGAACG-TA-GAAT-AAGTAAGTCCATAGt
gi|22 : TAT-AGGT--GAACTTAATAAAA--CGA-C-AC---GAAA----TTTAATAG------------------------TTTTT-----------------------TTTTTTT--TTTTT--------------------AATT-A-TT----TATC--AATTTT-G-G-AA--TAAA---------TAATA--A------ATTCTC----------C-AAATAAAAA-GC-----A--AC-AATAAT-T-C-AA-T----------------------------AGGGGAC---AACC----GA-CTG-----C--GA----------------A------AC-CC-CGC---------T---A-A-------G-AT-CATT-CAA--GTA-G-CGCCGGTTTTAA-TG-TTTCA-TC--AG-AT-A------ttggactgtctttta
gi|23 : C-CCGA--T-CAGG----CGCGGA------TCC-ATGATTT-GA--GGTTA-CA-GGGGA-CAAA---ACTT--C----A-------TGAGG
gi|24 : TT-CAA-AGTACG-CGCAGG-TT-GA-TG-TTCCG---------------------------------G---TCC-TTTCAAACTGAG-GCGTTA-G-AA-AATT---TCCAAATA-CGTCAGCgaagaggtctgacnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnttgatgaggtgaaattaatgaaa
gi|25 : T--TTG-T-GA--GGG--AT--A-TT-----CTTTTACT--------ACGGCTTGCA----TCAA--TTTTAATCATCGAGTTCTTGGTCAACAA-AGCTCACTTAAGCCACC-TCGAA-T-GAGGTGAAGGCGGGATTT--TCT-AGGATTT-GA--GGTTT-AA-GGGGG--ACA---ACTTAGG----A-------TGAGTCGCAAGGGGGTCTCGAGGGAATAatggtcagtgacaattannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnagtatatgtaacattttccacaga
gi|26 : tttaggca-----GTTTC---T-ACTGCCTGTTATAA--AT---AACAATTTGTCCAT--ATG-T-GAAAGGGC-AT--T-TT-----TTCTTCCTCTAGCCTGGCGACTTGCA----TCAA--TTCTC-TCAGAGAGTT---GATGAA-AG-A---CA---AGTCCACC-CCGA--T-CAGG----CGCGGA------TCC-ATGATTT-GA--GGTTA-CA-GGGGA-CAAA---ACTT--C----A-------TGAGGat
gi|27 : TTCT-C-A-AA--TAAA---CC--A-CAATA--A-TC-A--TAGTCGTT-TA-TTTCGAAA--AAGA-GT-CTTAA--ACTAATGATGT-A--------------------------TT---TTAGGTGCG---AAAC----C----------C--GCT---------------A------AA-TC-CAC---------C---A-CT-GCC--GGAT-CATT-CAAGAGTA-G-CGACAG-TTTGA-TG-TTTCA-TC--AATAT-A------C----A--GAC-A-TGGGATCC-TTTCAAG-TGA--ACG-Tgaagagg
gi|29 : atAA--GCTCCTGGA---------------------ATTTA-CAG---------ATAT-TATA---AG--------GT------TT------------G---AATTTCAA-TATTTT-CTTTCACTTTTTTATGAGGT--GAAACTGATGAAA--TGA-C-AC---TAAG----TTTAAGGA----------------------------T-----------------------TTC------TTGGG--------------------GGA--A-AA----TAT---GATTTG-C-A-AA--TATAA-GTA--A-CTAGA--AACC-A-A
gi|3 : tcaagggccgACTGACTGTGGCGAATT-A-----A------TA--TT--T-----GTTTC---C-ACTG---G--GTAA--AT---AATAATTTGACCCT--TTG-T-GAAAGGGC-AT--G-CT-----TTCTTTTTCTAGCCCGGCGAATAGCA----TCAAACCTCTC-TCAGAGA--T---GATAAA-AA-A---CA---AAGCCACC-CCGA--T-CAGG----CGCGGA------TCC-AGGATTG-GA--GGTTA-CA-CGGGA-TAAA---ACTT--C----A-------TGAGGCCCGCGGGG-----GAGGGGGTGGCAGCTCTCAGA---------------------TTTTA-TA----------AGAG-TAGA-----------ATGT------CTC----CTATGTAGT--ATTTTTAA-TATATA-CTGTCATTTTTTTATGAGGC--GAAATTAATAAAA--CGA-C-AC---AAAA----TTTAAGAG------------------------TTTTG-----------------------TTTGGATTGTTGGGGGGGGGGGGGTTGGGGGGGTAAAT-A-AC----TATA--CATTCT-C-C--A--TAAAA-GCA--A-CAATA--AATC-ATATTGTCGTT----TCTC-AAA--AAGA-GT-CG-AA--ACTATTGAT-T-A-AATT-TGAA--------------ATTT---TTAGGGGGG---GGGG----GG-G-G-----G--GC----------------A------AA-TC-CGC---------C---A-CT-GCC--G-AT-CATT-CAA-AGTA---CGCCGG-TTCGA-TG-GTCCA-TC--AG-AT-A------C----A--GAC-A-TA---TAC-TTTCAAC-TGAG-ACG-TA-G-ATAAATT---TCCA-AGA-CGC-AGC
gi|30 : -C-C-AA--ATAAA-GCA--A-ACATA--ATTC-A-ATTTCCGTT-TA-TTTC-AAA--AAGAAGT-CT-AA--ACTGATGAT-T-G-CA-G-TTAG--------------GTTT---------------GCGT----AA-C-C-----C--GCT---------------A------AA-AC-CAC---------C---A-CTTGCC--G-ATTCATTTCAA-AGTA-G--ACCAG-TTTGA-TG-T-CCA-TC--AG-AT-A------C----A--GAC-A-T
gi|32 : ttaAA--------------ATTT---A-AGGGGGG---GGGGCGCCGG-T-G-----C--GCCCACCCCTT-------A------AA-TC-CGC---------C---A-CT-t
gi|33 : gatatataatctttataaaactaagagggggcgccgtgtgtaatttattaattttttcagtgaaaaataagattatatataatacacttggtTCT-C-C-AAG-TAAAA-GCA--A-CAATA--ATTC-A-ATTGTCTTT-TC-TTTC-AAA--AAGA-GT-AT-AA--ACTAATTAT-T-A-A------------------------TT---TTAGGTGCG---AACC---------------C--GCT---------------A------AA-TC-CAC---------C---A-CT-GCC--G-AT-CATT-CAA-AGTA-G-CGACGG-TCTGA-TG-TTC
gi|34 : --------------------AAAT-A-TA----TAAA--AATTCT-C---AA--TAATG-ATATTA--AATA--AATT-A-ATTGTCGTT-TA-TTTC-TCA--GAGA-GT-TA-AA--ACAAATTAT-T------T-T--A--------------ATT-------GGGGAG---GGGG----GG-G-G-----G--GC-------------------------------T---------C---A-GT-GTC--A-AT-CATT-TAA-A
gi|35 : --------------------AAAT-A-TA----TAAA--AATTCT-C---AA--TAATG-ATATTA--AATA--AATT-A-ATTGTCGTT-TA-TTTC--TA--GCGA-GT-TA-AA--ACAAATTAT-T------T-TAA----------------------TTGGGAGGG---GGGG----GG-G-G-----C-----------------------------------T---------C---A-GT-GTC--A-AT-CATT-TAA-A
gi|36 : ACTATCTGTGGCAA--------------------------------TTTC---C-ACTG---G--GTAA--AT---AACAATTTTACCCT--TTG-T-GAAAGGGC-GT--A-TT-----TTCTTCCTTTAGCCCGACGACTTGCA----TCAAAC
gi|38 : cagttcgcaaaactggttctAGCCACC-TCGAAGTGTAGATGAAGGCGGGACTCTTTCT-AGGATTT-GAC-GGTTA--A-GGGG---ACA---ACTT--TATGGA-------TGAGG--CAAGGGGTCT--GAGGGAATA
gi|39 : -------TGAGTCCTGCGGGGA----GAGGGAAAA-----TCCTAGA---------------------TTTTA-CA----------AGAG-TAGA---AGTTGAAGAAGTTGACTACTC----CCATGTAGTC-ATTTTTAA-TATTTT-CTat
gi|4 : C-TCGA--A-CAGG----GGCGGA------TCT-AGGATTT-GA--GTTTA-TA-GGGG
gi|4 : TTAATGAGGT--GAAATTAATAAAA--TGA-C-AC---AAAA----TTTATGAGGT----------------------TTTTT-----------------------TTT------TT--------------------------T-A-AA----TATA--AA--------------GGAA-TTA--A-TAGTA--A----------------------C-AAA--AA-A-GT-CG-AA--AATAATTAT-T-TTAA-TATATA--------------ATGT---GTAGAGGGC---GCCG----GG-T-G-----C--GC----------------A----------C-CGT---------CTAAATCT-GCA--G-AT-AATT-CAA-AGTA-G-AGCTGG-TTTGA-TA-TCCAA-TC--AG-AT-ATACATGT----A--GGC-A-TG---ACC-TTTCaactgaggggtctgtnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnttaatgaggtgaaattaataaaatgacacaaaatttatgaggttttttttttttaaatataaaggaattaatagtaacaaaaaagtcgaaaataattattttaatatataatgtgtagagggcgccgggtgcgcaccgtctaaatctgcagataattcaaagtagagctggtttgatatccaatcagatatacatgtaggcatgacctttc
gi|40 : ctcgaacaggggcggatctaggatttgagtttataggggaactgaggggtctgtnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnTTTTTAATGAGGT--GAAATTGATAAGA--TGA-C-AC----AAT----TTTAAGAA------------------------TTTTT-----------------------T-----------GG--------------------AAAA-A-AA----TATA--AGTTCTAA-C-AA--TA
gi|43 : tttcagtactctaa-----GTTTCAAAC-CCTG---G--G-AA--AT---GACAAGTTGACCCT--GTG-TAAAAAGGGT-TT--A-CT-----TATTTCCTCTCGCCC
gi|44 : -----ATGT------CTC----CCATGTAGTC-ATTTTCAA-TATTTT------A-TTTTTTATAAGGT--GAAAATGATAAAC--TGA-C-AC---Atg
gi|45 : GA--T-CAAG----GACGAG------TCC-AGGATTT-GA--GATTA-GATGCGGG-CGCA---ACTT--T----A-------TAAGGC
gi|46 : acg-AA-TGTGAA--------------TTTC---TTTGGGGGG---GGGG----GG-G-G-----G--GC----------------A------AATTT-CG----------A---A-CT-GTA--A-AT-AATT-TAA-Aagg
gi|47 : T-CTGTAATTTTTTTACTGGGA--AAAATTAATTAAA--TTA-C-AC---A
gi|5 : aagagaggtccgccgAA----TTTAAA-----------------------------TT-----------------------TTT------TTG----------------------AAA--A-AA----T-TA-----TCT-C---AA--TAAAA-GTA--A-CAATA--CGTC-A-ATTAACGTT-TA-ACTG-AGA--GAGA-GT-CG-AA--AATAATGAT-T-A-TA-TATGAA--------------AATT---GTAAGGGGG---CGGG----GG-------------C----------------A------GG-TTGCGC-------------A-CC-CCCTAA-AT-CATT-CAA-AGTA-G-CGACGG-TTTGG-TG-TTCCA-TC--AG-AT-A------C----A--GTC-C-TG---TTC-TTTCAAC-CGAA-ACG-TA-G-AC-AATT---TGCAtt
gi|51 : G-TGAG-ACG-TA-G-AT-AATT---TCCATAGG-aaacaaacaacatttgcaatgacaattaannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncattatatgtagcattttccagagttcggcaacttgatacaactattttgccttacc
gi|6 : TTTTTATAAGGT--GAAATTGACAAA---TGAAC-AC---AAAA----TTTAAGAGGTTTTTAAATATTTATTTATTTATTTTTTG----------------------TTT------TTGG----------------------AAT-AGAA----TATA--AATTTT-C-C-AAA-TAAAA-GCA--A-CAATA--ATTC-A-ATTGTCGTT-TA-TTTC-AAN--NNNN-NN-NN-NN--NNNNNNNNN-N-N-NN-N-NNNNNNNNNNNNNNNNNNATTTAATTTAGGGGGC---ACCG----GG-T-G-----C--GA----------------ACCGCTTAA-TC-CTC---------C---A-CT-GCC--G-AT-CATC-TAA-CGTA-G-CGCCGG-TCT-A-TG-TTCCA-TC--AC-AT-A------C----A--GAC-A-TG---ACC-TTTCAAG-TGAG-ACG-TA-G-AT-AGTT---CCCATTGG-TGT-AGactgtctttgaa
gi|7 : --T-CAAA----GGTGGAG-----TCC-AGGATTTTGATTGGT-A-TA-G-----CACACAAACTT--A----AGAGATTCTGAGGCCCTCAGAG-----GA----ATAA--GCTCCAAGAAGCTTCTGAATTTGTAACACATTTTA-TA----------AATGCTAGA---AGT-----ACGT------CCCTAAGCCATGCAGGC-ATTTTAAA-CATTTTACTGTC--TTTTCGATGAAGTTTAGAATTA-TAAAA--TGA-CAAC---AAAAAATTTTTCATGG------------------------TTTGA-----------------------TTT------C---A--------------------AAAG-A-AAGACGTGTA--AATTgactgtctttg
gi|8 : TTTATTAGGT--GAAATTAATAAAA--TGA-C-AC---AAAA----TTTAGAGG------------------------TTTTTAAAAAAAATTATTTATCTATTTATTT------TTGG----------------------AAT-A-AA----TATA--AATTCT-C-A-AA--TAAAA-GCA--A-CAATA--ATTC-A-AT-GTCGTT-T--TTTC-AAA--A-GA-GTTCT-AA--ACTAATGAT-T-A-A------------------------TT---TTAGGGGGACACGGGT----GC-G-AACC--C--GCT---------------A------AA-TC--AC---------C---A-CTAGCC--G-AT-TATT-CAA-AGTA-G-CGCGGG-TTTGA-TG-TTCCA-TC--AG-AT-A------C----A--GAC-A-TG---ACC-TTTCAAG-TGAA-ACG-TAGG-AT-AATT---TCCATAGGCCGT-AGtaattgtttaagtttgaaaaatagagtaaagggggaggggggatgcaaccttctaaatccgtcaactactaaatcca
gi|9 : --AATTCT-C-C-AAA-TAATA-GCA--ATCAATA--ATTC-A-ATTGTCGTT-TA-TTT--AAA--AAGA-GT-CCTAA--ACTAATGAT---A-AA-T-------------------ATT------------A---GGTG----CG-A-A-----C--TCCCTT------------A------AA-TG-CAC---------C---A-TT-GCC--G-AT-CATT-CAA-AGTA-G-CGACGG-GTTGA-TGTTTTCA-TCATAT-AT-A------C----A--G-C-A-TG---ACC-T-------------CG-TA---AT-AATT---TTCATAGG-CGT-AGtactgtctt
blockSeqs : AAAACCCCAAAAGCACT AAA T CCT TT CC GGC AA T A CT CA A ATATG C T AGAA A A CTTG C GA GCT CTT T AG G TGAA ACTCTT C T TT CGA GC CAA AAGAGATTC AA GTCTC GCAG CG AGCTTCTGAATTTGTAACACA G GAGTTTATAA GC AGTTGAAG TGACTA CTAAG TTA A A T G G TT . A A . AATT GAGTTTTGTTTGGATTGTTGGGGGGGGGGGGGTTGGGGGGGTAAAT G GACG . C AT AA AA TT T TA A A T C C GA TA A T GT CA NNNNNNNNNNNNNNNNNNNNNNNATTTAATTTAGGGGGCACCGGGTGCGAACCGCTT T G G TTAGAATTA TAA T T TA G T T G C T C T A T G AT AT G TACATGT CT AA GGAT C AC A T G A A AAG C C
blockSeqs : GCAGTTCGAAAACT . . . . AT . . . . T . . . A G . A . G . C . . . A . TGAA ATTT . T C GAT C . TATGGA GC TCT AG TG . . G T AGT . T TC . . T T G A . . A . . GAGGTTTTTAAATATTTATTTATTTATTTTTTGTTTTTGGAAT . . . A AA AA T TT . . A . . . . T G . . TT . TAGATATGAAAATTTTAGGGGGGGGGGGGCAGCACCGAGTATGCCTCCTCTA . . A . . . A . . . . . . . A . . . . . G . CCTGT . AG T . C . . . . . . . .
blockSeqs : AAAAAACCTTTAGT . . . . . . . . . C . . . C T . A . A . G . . . . . C G . . . GA G . AGGA AA CT AG CA . . . G AGT . T TC . . T T G . . . . . . AGGTTTTTAAAAAAAATTATTTATCTATTTATTTTTGGAAT . . . . C G A . . . T . . . . C . . . CT . TTTAATATATAATGTGTAGAGGGCGCCGGGTGCGCA . . A . . . . . . . . . . . A . . . . . T . C . C A . G . . . . . . . .
blockSeqs : GAAAAAATTCT . . . . . . . . . T . . . A G . A . G . G . . . . . . . . . . GA C . TA GC A G TA . . . T AGT . C TC . . C T G . . . . . . TAGTTTTTTTTTTTTTTTTTAATT . . . . C A A . . . T . . . . A . . . G . TAAATTTGAAATTTTTAGGGGGGGGGGGGGGGGCA . . G . . . . . . . . . . . C . . . . . T . T . A A . G . . . . . . . .
blockSeqs : ATAAAACCT . . . . . . . . . C . . . A G . T . G . A . . . . . . . . . . CA G . AA TC . . AA . . . G AG . C GC . . T A G . . . . . . TGGTTTGATTTCAAAAG . . . . C A A . . . T . . . . A . . . T . CAAAATATGAAATTATAGGTGGGCGCAACCTTTA . . G . . . . . . . . . . . A . . . . . G . C . A A . G . . . . . . . .
blockSeqs : TTAATATTT . . . . . . . . . C . . . A G . A . C . G . . . . . . . . . . AA A . TA G . . . G . . C T . . T A G . . . . . . TTTTTCTTTTAAAATA . . . . C . T . . . C . . . . T . . . T . TAATTTTAGGGGGACACGGGTGCGAACCCGCTA . . A . . . . . . . . . . . C . . . . . T . C . A A . G . . . . . . . .
blockSeqs : . . . . . . . . . . C . . . C . . A . G . A . . . . . . . . . . CA G . TA . . . . . . T A . . . . . . GAGGTTTTTTTTTTTT . . . . C . A . . . T . . . . A . . . G . TATATATGAAAATTGTAAGGGGGCGGGGGCA . . G . . . . . . . . . . . C . . . . . G . C . A T . C . . . . . . .
blockSeqs : . . . . . . . . . C . . . . . . . G . . . . . . . . . . . . CA A . CA . . . T T . . . . . . GGATTTCTTGGGGGA . . . . G . A . . . A . . . . A . . . G . TGCAGTTAGGTTTGCGTAACCCGCTA . . A . . . . . . . . . . . A . . . . . G . C . A T . C . . . . . .
blockSeqs : . . . . . . . . . T . . . . . . . . . . . . TA A . CA . T A . . . . . . GAATTTTTTGGAAAA . . . . A . A . . . A . . . . A . . . T . TCAATAGGGGACAACCGACTGCGAA . . G . . . . . . . . . . . C . . . . . G . C . C A . G . . . . . .
blockSeqs : . . . . . . . . . . . . . . TA G . CA G G . . . . . . GTTTTTGATAAAA . . . . A . A . . . T . . . . A . . . G . GTATTTTAGGTGCGAAACCCGCTA . . A . . . . . . . . . . . C . . . . . G . C . A T . G . . . . . .
blockSeqs : . . . . . . . . A . . TA T T . . . . . . ATTTTTTTGAAA . . . . C . G . . . T . . . . A . . . T . TTTAATTGGGGAGGGGGGGGGGGC . . G . . . . . . . . . . . A . . . . . G . C . A A . G . . . . . .
blockSeqs : . . . . . . . A . . . . . . . . . . CATTTTTTTA . . . . C . G . . . A . . . . T . . . T . AAATATTAGGTGCGAACTCCCTTA . . G . . . . . . . . . . . C . . . . . C . C . A A . . . . . . . .
blockSeqs : . . . . . . . . . . . . . . . . . . . . C . A . . . A . . . . A . . . A . AAATTTTAGGTGCGAGCCGCTAA . . G . . . . . . . . . . . A . . . . . G . . . . A . . . .
blockSeqs : . . . . . . . . . . . . . . . C . A . . . G . . . . A . . . A . TAATTTTAGGTGCGAACCCGCTA . . T . . . . . . . . . . . C . . . . . T . . . .
blockSeqs : . . C . A . . . T . . . . A . . . G . TTTAATTGGGAGGGGGGGGGGGC . . A . . . . . . . . . . . C . . . . . . .
blockSeqs : . . A . A . . . T . . . . A . . . G . AAATATTTTAGGGCCTCCCGTA . . A . . . . . . . . . . . A . . . . . . .
blockSeqs : . C . A . . . T . . . . A . . . N . AAATTTTAGTTGGAACCAGCT . . . . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . . . . . . T . AAACTTTTAGGTGCG . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . . . . . . . . .
blockSeqs : . . .
blockSeqCons : GNAAAACCT********************* G*** NA** CA************* AGT******** ** *** ** C**
originalCons : ACTGCCTGTGGCGAAGN-A-----A------AA--NC--T-----GTTTC---C-ACTG---G--GTAA--AT---AACAATTTGACCCT--TTG-T-GAAAGGGC-AT--A-TT-----TTCTTCCTCTAGCCCGGCGACTTGCA----TCAAACTTCTC-TCAGAGAGTT---GGTCAA-AG-A---CA---AAGCCACC-CCGA--T-CAGG----GGCGGA------TCC-AGGATTT-GA--GGTTA-NA-GGGGG-CACA---ACTT--C----A-------TGAGGCCCGCGGGG-----GAGGGGATAG--GCTCCCGGA---------------------TTTTA-CA----------AGAG-TAGA---AGT-----ATGT------CTC----CCATGTAGTC-ATTTTTAA-TATTTT-CTGTCATTTTTTTATGAGGT--GAAATTAATAAAA--TGA-C-AC---AAAA----TTTAAGAG------------------------TTTTT-----------------------TTT------TTGGG--------------------AAAT-A-AA----TATA--AATTCT-C-C-AA--TAAAA-GCA--A-CAATA--ANTC-A-ATTGTCGTT-TA-TTTC-AAA--AAGA-GT-CN-AA--ACTAATGAT-T-A-AA-T-TGAA--------------ATTT---TTAGGGGGG---GGGG----GG-G-G-----C--GC----------------A------AA-TC-CGC---------C---A-CT-GCC--G-AT-CATT-CAA-AGTA-G-CGCCGG-TTTGA-TG-TTCCA-TC--AG-AT-A------C----A--GAC-A-TG---NCC-TTTCAAG-TGAG-ACG-TA-G-AT-AATT---TCCATAGG-CGT-AGC
finalCons : ACTGCCTGTGGCGAAGNAAAACCT---------------------GTTTC---C-ACTG---G--GTAA--AT---AACAATTTGACCCT--TTG-T-GAAAGGGC-AT--A-TT-----TTCTTCCTCTAGCCCGGCGACTTGCA----TCAAACTTCTC-TCAGAGAGTTG---GTCAA-AG-A---CA---AAGCCACC-CCGA--T-CAGG----GGCGGA------TCC-AGGATTT-GA--GGTTANA--GGGGG-CACA---ACTTCA-------------TGAGGCCCGCGGGG-----GAGGGGATAG--GCTCCCGGA---------------------TTTTA-CA----------AGAG-TAGAAGT--------ATGT------CTC----CCATGTAGTC-ATTTTTAA-TATTTT-CTGTCATTTTTTTATGAGGT--GAAATTAATAAAA--TGA-C-AC---AAAA----TTTAAGAG------------------------TTTTT-----------------------TTT------TTGGG--------------------AAAT-A-AA----TATA--AATTCT-CC--AA--TAAAA-GCA--A-CAATA--ANTC-A-ATTGTCGTT-TA-TTTC-AAA--AAGA-GT-CN-AA--ACTAATGAT-T-A-AA-T-TGAA--------------ATTT---TTAGGGGGG---GGGG----GG-G-G-----C--GC----------------A------AA-TC-CGC---------C---A-CT-GCC--G-AT-CATT-CAA-AGTA-G-CGCCGG-TTTGA-TG-TTCCA-TC--AG-AT-A------C----A--GAC-A-TG---NCC-TTTCAAG-TGAG-ACG-TA-G-AT-AATT---TCCATAGG-CGT-AGC
8 sequences could not be aligned to this reference sequence:
Unaligned ( gi|28 ): GGAGGAAACTTCTCGTAATGCAGACAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGAAAATTAAAGAAAGGTTATCAGAAAACTGAAGGGGACATTACAAATTATAAGTCAGATGC
Unaligned ( gi|31 ): GGATTTCGGGAGAAAATACTCTACTCGATAAACCACGCCCGTTCCGTCACCTGTTCTAAATTTATTATTGGACCTATGGCGCTAGCCTGACTTTAGTCGAAGGCAGTTTGAGAACTGTTTCTACTGCCTGTGTCGAAGGGGAAAAGAAATTC
Unaligned ( gi|37 ): TATTTAAATGGGGGTTATAAACACAAGAAAATTAAGAAAGTAATAGAAAACTGAAGGAGGGGGATGCAATATTATGTTCATATGCAGAAAAATGTATACAAGGGGGGGGGGG
Unaligned ( gi|41 ): GGGGGAGAAATTGAGGAAAACCGGCCTCCACTCAGATCAACAAGCCATTCCGTCGCCTGGTTCTAAAGTTATTTACAAGCGATCG
Unaligned ( gi|42 ): CTGTCTTATGAAGAGGGGGGAGGGGGGCAAACTTCTAAACTATATGCGACACAATGAACCAGAAATTTGATG
Unaligned ( gi|48 ): CTGTGACTTTGATGCAGAAGGGGGGGGGGGTAAACTTCTAAATTATGTGC
Unaligned ( gi|49 ): GCACAGAGTGGTATGGGGGAGAGACCTGTCAAACTTCTAGTATATGGA
Unaligned ( gi|50 ): AGTTCGAGAACCGTTTTACTGTCTGTGGCGATTTCGACTGGGTACA
Alignments
lowQualScore : 1111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111 1111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 44444444444444444444444444444444 11 11111 1111 111111 1111 222222222222222 33333 1111 555555555555555555555 3333333333 22222222222 111111 11111 0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 11 3333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333
lowQualScore : 11111111111111111111111111111111 777 4 777 55 11 777 55 3 3 44 88 00000 0 7 2 9999 3 4 0 7777 4 66 777 777 3 66 2 4444 666666 2 5 66 1111 66 555 333333333333333 66 77777 5555 44 666666666666666666666 5 0000000000 66 22222222222 444444 00000 777 0 4 4 6 6 1 66 33 2 8 444 6666 5555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555 2 5555 33 3 999 00 44 55 1 22 6 1 1 2 2 33 44 2 2 77 22 3333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333 1 1 2 777777777 333 1 3 22 2 2 1 1 2 2 2 2 2 2 2 33 33 2 99999999999 33 0 444 6666 2 66 2 2 3 3 3 555 5 5
lowQualScore : ................................ ... . ... .. .. ... .. . . .. .. ..... . . . .... . . . .... . .. ... ... . .. . .... ...... . . .. .... .. ... ............... .. ..... .... .. ..................... . .......... .. ........... ...... ..... ... . . . . . . .. .. . . ... .... .............................................................................................. . .... .. . ... .. .. .. . .. . . . . . .. .. . . .. .. .............................................................................................. . . . ......... ... . . .. . . . . . . . . . . . .. .. . ........... .. . ... .... . .. . . . . . ... . .
lowQualScore : 00000000000000000000000000000000 000 0 000 55 00 000 00 6 6 00 66 00000 8 1 5 4444 4 4 1 9999 4 33 888 888 3 33 7 0000 000000 7 3 88 2222 44 444 777777777777777 00 99999 3333 33 777777777777777777777 7 7777777777 44 66666666666 444444 99999 555 1 4 0 2 9 2 33 77 7 0 777 1111 8888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888 7 7777 22 6 888 55 55 22 9 66 6 9 9 0 0 00 88 0 0 77 99 7777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777 9 9 5 666666666 333 9 8 88 0 0 9 9 2 2 5 2 2 2 4 22 66 4 66666666666 77 6 444 0000 9 55 9 9 1 1 1 444 0 7
consensus : ACTGCCTGTGGCGAAGN-A-----AAA--CC----------T-----GTTTC---C-ACTG---G--GTAA--AT---AACAATTTGACCCT--TTG-T-GAAAGGGC-AT--ATT-----TTCTTCCTCTAGCCCGGCGACTTGC----ATCAAACTTCTC-TCAGAGAGTT---GGTCAA-AG-A---CA---AAGCCACC-CCGA--T-CAGG----GGCGGA------TCC-AGGATTT-GA--GGTTA-NA-GGGGG-CACA---ACTT--C----A-------TGAGGCCCGCGGGG-----GAGGGGATAG--GCTCCCGGA---------------------TTTTA-CA----------AGAG-TAGA---AGT-----ATGT------CTC----CCATGTAGTC-ATTTTTAA-TATTTT-CTGTCATTTTTTTATGAGGT--GAAATTAATAAAA--TGA-C-AC---AAAA----TTTAAGAG------------------------TTTTT-----------------------TTT------TTGGG--------------------AAAT-A-AA----TATA--AATTCT-C-C-AA--TAAAA-GCA--A-CAATA--ANTC-A-ATTGTCGTT-TA-TTTC-AAA--AAGA-GT-CN-AA--ACTAATGAT-T-A-AA-T-TGAA--------------ATTT---TTAGGGGGG---GGGG----GG-G-G-----C--GC----------------A------AA-TC-CGC---------C---A-CT-GCC--G-AT-CATT-CAA-AGTA-G-CGCCGG-TTTGA-TG-TTCCA-TC--AG-AT-A------C----A--GAC-A-TG---NCC-TTTCAAG-TGAG-ACG-TA-G-AT-AATT---TCCATAGG-CGT-AGC
Reference ( family-325 ) : ACTGCCTGTGGCGAAGN-A-----AAA--CC----------T-----GTTTC---C-ACTG---G--GTAA--AT---AACAATTTGACCCT--TTG-T-GAAAGGGC-AT--ATT-----TTCTTCCTCTAGCCCGGCGACTTGC----ATCAAACTTCTC-TCAGAGAGTT---GGTCAA-AG-A---CA---AAGCCACC-CCGA--T-CAGG----GGCGGA------TCC-AGGATTT-GA--GGTTA-NA-GGGGG-CACA---ACTT--C----A-------TGAGGCCCGCGGGG-----GAGGGGATAG--GCTCCCGGA---------------------TTTTA-CA----------AGAG-TAGA---AGT-----ATGT------CTC----CCATGTAGTC-ATTTTTAA-TATTTT-CTGTCATTTTTTTATGAGGT--GAAATTAATAAAA--TGA-C-AC---AAAA----TTTAAGAG------------------------TTTTT-----------------------TTT------TTGGG--------------------AAAT-A-AA----TATA--AATTCT-C-C-AA--TAAAA-GCA--A-CAATA--ANTC-A-ATTGTCGTT-TA-TTTC-AAA--AAGA-GT-CN-AA--ACTAATGAT-T-A-AA-T-TGAA--------------ATTT---TTAGGGGGG---GGGG----GG-G-G-----C--GC----------------A------AA-TC-CGC---------C---A-CT-GCC--G-AT-CATT-CAA-AGTA-G-CGCCGG-TTTGA-TG-TTCCA-TC--AG-AT-A------C----A--GAC-A-TG---NCC-TTTCAAG-TGAG-ACG-TA-G-AT-AATT---TCCATAGG-CGT-AGC
gi|1 : ACTGCTTTTGGTGAAGGGA-----AAA--TA----------T-----GATTC---C-ATTG---G--GTAA--AT---AACAACTTGACCCT--TTG-T-GAATGGGT-AT--ATT-----TTC--CCTCT--CCCTGTGGCTTGC----ATCAAACTTCTT-TCTGAGAGTT----GTC-A-AG-A---CG---AGGCTGCC-CCGA--T-CAGT----GGCGGA------TCC-AGGATTT-GA--GGTTA------GCG-CACA---ACTT--C----AGGAGATCTGAGTCCCTCAG---------AGGGCTAG--GCTCCTTGA---------------------TTTTA-C-----------AGAT-TTTATTTA-T-----ATGT------CTC----TCACTTAATA-ATTTTTTA-TATTCT-CTGTCA--TTTTGATGAGAT--G-GACTGATAAAAATTGG-CAACAAAAAAA----ATTAAG------------------------------T-----------------------TTT------CTGGG--------------------GGAA-A-AA----TATATCAATTTT-C-CTAA--TAAAG-GTA--A-CAAGA--AATC-A-AATGTGGTT-TA-TTAC-AGA--GAAA-GT-TG-AA-----AATAAT-T-A-GT-T-TGAA--------------A--A---TAATGGGTG---AGGG----TG-T-G-----C--ACCCTCT-----------A------AA-TC-CGC---------C---A-CT-ACC--G-AT-CATT-CAA-AGTA-G-CGCCGG-TTTGA-TG-TTCCA-TC--AG-AT-A------C----A--GGG-A-TG---C----TGCAAC-TGAG-------------AATT---TCCA
gi|10 : gggggggggctatactcggattaacacacgcctttccgtcattaaatttagtgaccagtgatcgatttcagactattgagaattgttttcactaactgtttctAAATTTCTC-TGAGAATGCT---GGTCAA-AC-A---CA---AAACAACC-TTGA--C-CAGG----GGAGGA------TCC-AGGACTT-GA--TATTA-GA-GGAGC-GAAA---ATTT--T----A-------AGAGGCataaggccagcgtttgcaacgacaattagnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngtaaaattctccagatttcaataacctgatgcaatcactattttgccc
gi|10 : TTTA-CA----------CGGT-TAAA---AGT-----ATAT------CTT----TCATGTGGTC-ATTTTTAA-TATTTT--TCTCATTTTTT------------GATT-------------C-AC---AAAA----TGTAACA----------------------------TT-----------------------TTT------TTA---------------------------A-AA----CATG--AATTTT-TAT-GA--TCAAT-GTC--A-CAATA--AATC-A-AATGagggtgtctgtggtccctagagatttaaaataccgaaagcctcttgtaaagcatttacacggttaaaagtatatctttcatgtggtcatttttaatatttttctcattttttgattcacaaaatgtaacatttttttaaaacatgaatttttatgatcaatgtcacaataaatcaaatgatg
gi|11 : aaatttctctgagaatgctggtcaaacacaaaacaaccttgaccaggggaggatccaggacttgatattagaggagcgaaaattttaagaggcagggtgtctgtggtccctagagatttaaaataccgaaagcctcttgtaaagcaTGACGAAGC-AGTTCGAAA--AC----------T-----GTTTC---CTACTG---G--CCAGCCATGGCAACAATTAACCCCT--TTGTT-AAAAAGGCTAT--ATT-----TTC--CCTCTCGCCCTGCGGTTCAT----AT-AAACTTCTC-TC-GAGAATT---AGTCAA-AGAA---CA---AAGCCACCTTCGA--T-CAGGC---GCCGGA------TCT-AGGATTT-AA--TGTTACGA-GGGGG-CACA---ACTT--C----atg
gi|12 : ccggtgatT--AAAATTAATACAT--TGA-C-AC---AAAA----T----G------------------------------------------------------TTT------TTGAT--------------------AAAA-A-AA----TATA--GATTCT-CAA-AA--TAAAA--TA--A-CAATA--AATC-A-ATCGTCGTT-TA-TTTC-------AGA-GT-CG-AA--AATAATAAT-CAA-AA-TATGAA--------------ATTA---T------------AGG----TG-G-G-----C--GCAACCTTT---------A------AA-TC-TGC---------C---A-CT-ACC--G-GT-CATT-CAA-ATCA-G-CACTAG-TTTGA-TG-TTCCT-TC--AG-AT-A------C----A--GGC-C-TA---TCC-TTTTAAC-TGAG-ACG-TA-G-AC-AATT---CCcagggatcagatagcaagccacacctaaattgcttagttctacagtacaaaacactagcgatgaaa
gi|13 : TCT-C-C-AA--ATAAA-GCA--A-CAATA--ATTC-A-A-TGCAGTT-TA--TTC-TAA--AAGA-GT-CT-AA--A-TAATG-----A-AA-T-------------------ATTT---T-------------------AG-G-GCCTCCC--GT----------------A------AA-TC---C---------C---A-C--G---------CATT-CAA-AGTA-G-CA-CGG-TTT-A-CG-TTCAA-T------AT-A-----------A--GACAA-TG---ACC--TTCAA--TGAG-AC-----G-AT-AATT---TCaaaactcccaccggttgcaatgaaaatta
gi|14 : aACTGCTTGTGGCGAAGA-A-----AAAATTC----------T-----GTTTC---C-ACTG---G--GTAGATAT---AACAATTAGACCCTAAATG-T-GAAAGGGT-AT--Aaaggtcggactgcttttgagagaggggggaggggggaaacttctagtaatgcgacagcgcaaaaatcaaaagcctaatggaacactaaat
gi|15 : gagaaaattttaatcggataaacacagccgttccgtcgaatggtttttaatttatttaacaggaattttatatgctataaataaaagcaataaattttccttattggcatctaggctagcgaagactaaaacgtcgaagatgttcgagaactaattct--T-CAAA----GGTGGA------TCCCAGGATTTTGA--GGTTG-A---GCAC-CACA---ACTT--A----A-------GGAGATCC
gi|15 : C-ATTTTAAAACATTTT-C-GTCATTTTCGGATGAGTTA-GAATTTAATAAAA--T-A-C-AC---AAAA----agaggcctcagctacgggataacgcttccaagaagtgcttctgatattgtacacattttattaaagctaccgaaagtcaccaaagtccttaagagcatgaccagcgacattttaaaacattttcgtcattttcggatgagttagaatttaataaaatacacaaaaaaatt
gi|16 : tcaaaggtggatcccaggattttgaggttgagcaccacaacttaaggagatccagaggcctcagctacgggataacgcttccaagaagtgcttctgatattgtacacattttattaaagctaccgaaagtcaccaaagtccttaagagcatgaccagcgaACTACCTTTGGCAAAAT-A-----AAA--CC----------T-----GTTTC---C-ACTG---G--GTAA--AT---AACAATTTGACTCT--TTG-T-GAAAGGGC-ATA-ATTATATGTTCTTCCTCTAGCCCGGCGACCTGCAAGAATCAAACTTCTC-TCAAAGAGTT---GATCAA-AG-A---AA---AAGTCACC-CCGA--T-CAGG----CGCGGA------TCC-AGGATTT-aaatt
gi|17 : ttttagatattgaagaagcaggccgagaaaaccaggttctat--AATTCT-C-C-AAAATAAAAAGCA--A-CAATATAATTC-A-ATTGTCGTT-TA-TTTT-CAA--AAAA-GT-CT-AA--ACTAATGAT------------AA--------------ATTT---T------AG---GTGC----GA-G-C-----C--GCTA--------------A------AA-TC-CAC---------C---A-CT-GCC--G-AT-CATT-CAA--GTA-G-CGACG--TTTGAATG-TTTCA-TC--AT-AT-A------T----ACTGAC-A-TG---ACCCTTTCAAG-TGAG-ACG-TA-G-AT-AATT---TTCATAGG-CGT-AG
gi|18 : TTT-C-C-AAAATAAAA-GCA----CAATA--ATTC-A--TTGTCGTT-TA-TTTA-AAA--AAGA-GT-CGTAA--ACTAATGAT------------AA--------------ATTT---T-----------AGTT----GG-A-A-----CCAGC----------------T------AA-TC-C-C---------C---A-CT-GCT--G-CT-TATT-CAA-AGTA-GTCGACAC-TTTGA-TG-TTTCAGTC--AT-ATGA------CCTGTA--GAC-AGTG---AC---TTCAAG-TGAG-ACG-TA-G-AT-AATT---TCCATA-G-CGT-gttactgtctttga
gi|19 : GGGACAG---CTCCCGGA---------------------TTTTAGCAGAGTTTATAAAGAG-TAGA---AGT-----ATGT------CTT----CCATGTTGTTAACTTGTAA-TATTTT-CTGTCATTTTAT--TGAGGT--GAAATTAATAAAA--TGA-CAAC---A---------------------------------------TTTTT-----------------------CTT------TT--A--------------------AAATAA-AA----TATC--AATTCTCC-C-AA--T-AAT-GCA--A-CATAA--ACTCAA-ATTGTCGTTCTA-TTTC-AAAG-AAGA--T-CG-Ataggactgtatttga
gi|2 : tccaattACTACCTGTGGCGAAAA-A-----AAA--CC----------TTTAGTGTTTC---C-AATG---G--GTAA--AA---AACAATTTGACCCT--TTG-T-GAAAAGGT-AC--ATT-----T--TTCCTCTCGCCCTGCAACTTGC----ATCAAACGTCTC-TCAGAGCGCT---GG-CAA-A--A---CA---AAGCCACC-CCGA--T-C-GG----GGCCGA------TCC-AGGATTT-GA--GGTTA-GA-GGGGGCCGCA---ACTT--T----A-------TAAGACAAG-GGGGCT---GAGGGGAT
gi|2 : ttctgggagaaaaatggggaaaaactattcggatcgacacaccgtagcgtcgcctgattctaaactatttaccacccattgatttccggttattgacaaagaagttcaagaactgtttccTCGTT-TA-TTTC-TCA--GACA-GT-CG-AACAAAAAATGAT-T-A-GA-TATGAA--------------AATT---TTAGGGGGG---GGGG----GGCA-G-----C--ACCGAGTATGCCTCCTCTA------AA-TT-CAC---------C---A-CT-GCC--G-AT-CAAT-CAA-AGTA-G-CACCGG-TTTGA-TG-TTTCA-AC--AG-AT-A------catagggctgaattcgtttatttctcagacagtcgaacaaaaaatgattagatatgaaaattttaggggggggggggcagcaccgagtatgcctcctctaaattcaccactgccgatcaatcaaagtagcaccggtttgatgtttcaacagatannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngccagcgtttgcaatgacaattannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntcagttataaataattatatgtagcattttccagagttcggcaa
gi|20 : ttctgggagaaaaatggggaaaaactattcggatcgacacaccgtagcgtcgcctgattctaaactatttaccacccattgatttccggttattgacaaagaagttcaagaactgtttccactacctgtggcgaaaaaaaacctttagtgtttccaatgggtaaaaaacaatttgaccctttgtgaaaaggtacatttttcctctcgccctgcaacttgcatcaaacgtctctcagagcgctggcaaaacaaagccaccccgatcggggccgatccaggatttgaggttagagggggccgcaactttataagacaagggggctgaggggatcatagggctgaatACTGCTTG-GGTGAA---A-----AAA--CCCCAAAAGCACT-----GTTTC---C-ATTG---G--GTAG--AT---GATAATTTGAATAA--TTG-T-GAAA-GGC-ATCAATT-----TTCTnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngccagcgtttgcaatgacaattannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntcagttataaataattatatgtagcattttccagagttcggcaa
gi|20 : accagcgatcgactaccggttatagacgaagcagcattctGC----ATCAATTTTCTC-CCAAAGACTT---CGTTAA-AG-A---CA---AAGGCACT-TCGA--T-CAGG----GGCGGA------TGT-AGAATTT-G---GGT---------GG-CACA---TCTT--T----A-------Tcccaaagacttcgttaaagacaaaggcacttcgatcaggggcggatgtagaatttgggtggcacatctttatt
gi|21 : accagcgatcgactaccggttatagacgaagcagcattctactgcttgggtgaaaaaaccccaaaagcactgtttccattgggtagatgataatttgaataattgtgaaagATTCT-C-C-AA--TAAA--GCA--A---------TTC-A-ATTGTCGTT-TACTTTC-AAA--AAGA-GT-CT-AA--ACTAATGAT------------AA--------------ACTT---TTA-----------------GG-T-G-----C--G-------------------------A-CC-CGCTTAGAATTAC---A-CT-G-C--G-AT-C-TT-CAA-AGTA-G-CGACGG-TTTGA-TG-TT-TA-TC--AT-AT-A------C----A--GAC---TG---ACT-TT---AG-TGAGAACG-TA-GAAT-AAGTAAGTCCATAGt
gi|22 : TAT-AGGT--GAACTTAATAAAA--CGA-C-AC---GAAA----TTTAATAG------------------------TTTTT-----------------------TTTTTTT--TTTTT--------------------AATT-A-TT----TATC--AATTTT-G-G-AA--TAAA---------TAATA--A------ATTCTC----------C-AAATAAAAA-GC-----A--AC-AATAAT-T-C-AA-T----------------------------AGGGGAC---AACC----GA-CTG-----C--GA----------------A------AC-CC-CGC---------T---A-A-------G-AT-CATT-CAA--GTA-G-CGCCGGTTTTAA-TG-TTTCA-TC--AG-AT-A------ttggactgtctttta
gi|23 : C-CCGA--T-CAGG----CGCGGA------TCC-ATGATTT-GA--GGTTA-CA-GGGGA-CAAA---ACTT--C----A-------TGAGG
gi|24 : TT-CAA-AGTACG-CGCAGG-TT-GA-TG-TTCCG---------------------------------G---TCC-TTTCAAACTGAG-GCGTTA-G-AA-AATT---TCCAAATA-CGTCAGCgaagaggtctgacnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnttgatgaggtgaaattaatgaaa
gi|25 : T--TTG-T-GA--GGG--AT--ATT-----CTTTTACT--------ACGGCTTGC----ATCAA--TTTTAATCATCGAGTTCTTGGTCAACAA-AGCTCACTTAAGCCACC-TCGAA-T-GAGGTGAAGGCGGGATTT--TCT-AGGATTT-GA--GGTTT-AA-GGGGG--ACA---ACTTAGG----A-------TGAGTCGCAAGGGGGTCTCGAGGGAATAatggtcagtgacaattannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnagtatatgtaacattttccacaga
gi|26 : tttaggca-----GTTTC---T-ACTGCCTGTTATAA--AT---AACAATTTGTCCAT--ATG-T-GAAAGGGC-AT--TTT-----TTCTTCCTCTAGCCTGGCGACTTGC----ATCAA--TTCTC-TCAGAGAGTT---GATGAA-AG-A---CA---AGTCCACC-CCGA--T-CAGG----CGCGGA------TCC-ATGATTT-GA--GGTTA-CA-GGGGA-CAAA---ACTT--C----A-------TGAGGat
gi|27 : TTCT-C-A-AA--TAAA---CC--A-CAATA--A-TC-A--TAGTCGTT-TA-TTTCGAAA--AAGA-GT-CTTAA--ACTAATGATGT-A--------------------------TT---TTAGGTGCG---AAAC----C----------C--GCT---------------A------AA-TC-CAC---------C---A-CT-GCC--GGAT-CATT-CAAGAGTA-G-CGACAG-TTTGA-TG-TTTCA-TC--AATAT-A------C----A--GAC-A-TGGGATCC-TTTCAAG-TGA--ACG-Tgaagagg
gi|29 : atAA--GCTCCTGGA---------------------ATTTA-CAG---------ATAT-TATA---AG--------GT------TT------------G---AATTTCAA-TATTTT-CTTTCACTTTTTTATGAGGT--GAAACTGATGAAA--TGA-C-AC---TAAG----TTTAAGGA----------------------------T-----------------------TTC------TTGGG--------------------GGA--A-AA----TAT---GATTTG-C-A-AA--TATAA-GTA--A-CTAGA--AACC-A-A
gi|3 : tcaagggccgACTGACTGTGGCGAATT-A-----ATA--TT----------T-----GTTTC---C-ACTG---G--GTAA--AT---AATAATTTGACCCT--TTG-T-GAAAGGGC-AT--GCT-----TTCTTTTTCTAGCCCGGCGAATAGC----ATCAAACCTCTC-TCAGAGA--T---GATAAA-AA-A---CA---AAGCCACC-CCGA--T-CAGG----CGCGGA------TCC-AGGATTG-GA--GGTTA-CA-CGGGA-TAAA---ACTT--C----A-------TGAGGCCCGCGGGG-----GAGGGGGTGGCAGCTCTCAGA---------------------TTTTA-TA----------AGAG-TAGA-----------ATGT------CTC----CTATGTAGT--ATTTTTAA-TATATA-CTGTCATTTTTTTATGAGGC--GAAATTAATAAAA--CGA-C-AC---AAAA----TTTAAGAG------------------------TTTTG-----------------------TTTGGATTGTTGGGGGGGGGGGGGTTGGGGGGGTAAAT-A-AC----TATA--CATTCT-C-C--A--TAAAA-GCA--A-CAATA--AATC-ATATTGTCGTT----TCTC-AAA--AAGA-GT-CG-AA--ACTATTGAT-T-A-AATT-TGAA--------------ATTT---TTAGGGGGG---GGGG----GG-G-G-----G--GC----------------A------AA-TC-CGC---------C---A-CT-GCC--G-AT-CATT-CAA-AGTA---CGCCGG-TTCGA-TG-GTCCA-TC--AG-AT-A------C----A--GAC-A-TA---TAC-TTTCAAC-TGAG-ACG-TA-G-ATAAATT---TCCA-AGA-CGC-AGC
gi|30 : -C-C-AA--ATAAA-GCA--A-ACATA--ATTC-A-ATTTCCGTT-TA-TTTC-AAA--AAGAAGT-CT-AA--ACTGATGAT-T-G-CA-G-TTAG--------------GTTT---------------GCGT----AA-C-C-----C--GCT---------------A------AA-AC-CAC---------C---A-CTTGCC--G-ATTCATTTCAA-AGTA-G--ACCAG-TTTGA-TG-T-CCA-TC--AG-AT-A------C----A--GAC-A-T
gi|32 : ttaAA--------------ATTT---A-AGGGGGG---GGGGCGCCGG-T-G-----C--GCCCACCCCTT-------A------AA-TC-CGC---------C---A-CT-t
gi|33 : gatatataatctttataaaactaagagggggcgccgtgtgtaatttattaattttttcagtgaaaaataagattatatataatacacttggtTCT-C-C-AAG-TAAAA-GCA--A-CAATA--ATTC-A-ATTGTCTTT-TC-TTTC-AAA--AAGA-GT-AT-AA--ACTAATTAT-T-A-A------------------------TT---TTAGGTGCG---AACC---------------C--GCT---------------A------AA-TC-CAC---------C---A-CT-GCC--G-AT-CATT-CAA-AGTA-G-CGACGG-TCTGA-TG-TTC
gi|34 : --------------------AAAT-A-TA----TAAA--AATTCT-C---AA--TAATG-ATATTA--AATA--AATT-A-ATTGTCGTT-TA-TTTC-TCA--GAGA-GT-TA-AA--ACAAATTAT-T------T-T--A--------------ATT-------GGGGAG---GGGG----GG-G-G-----G--GC-------------------------------T---------C---A-GT-GTC--A-AT-CATT-TAA-A
gi|35 : --------------------AAAT-A-TA----TAAA--AATTCT-C---AA--TAATG-ATATTA--AATA--AATT-A-ATTGTCGTT-TA-TTTC--TA--GCGA-GT-TA-AA--ACAAATTAT-T------T-TAA----------------------TTGGGAGGG---GGGG----GG-G-G-----C-----------------------------------T---------C---A-GT-GTC--A-AT-CATT-TAA-A
gi|36 : ACTATCTGTGGCAA----------------------------------TTTC---C-ACTG---G--GTAA--AT---AACAATTTTACCCT--TTG-T-GAAAGGGC-GT--ATT-----TTCTTCCTTTAGCCCGACGACTTGC----ATCAAAC
gi|38 : cagttcgcaaaactggttctAGCCACC-TCGAAGTGTAGATGAAGGCGGGACTCTTTCT-AGGATTT-GAC-GGTTA--A-GGGG---ACA---ACTT--TATGGA-------TGAGG--CAAGGGGTCT--GAGGGAATA
gi|39 : -------TGAGTCCTGCGGGGA----GAGGGAAAA-----TCCTAGA---------------------TTTTA-CA----------AGAG-TAGA---AGTTGAAGAAGTTGACTACTC----CCATGTAGTC-ATTTTTAA-TATTTT-CTat
gi|4 : C-TCGA--A-CAGG----GGCGGA------TCT-AGGATTT-GA--GTTTA-TA-GGGG
gi|4 : TTAATGAGGT--GAAATTAATAAAA--TGA-C-AC---AAAA----TTTATGAGGT----------------------TTTTT-----------------------TTT------TT--------------------------T-A-AA----TATA--AA--------------GGAA-TTA--A-TAGTA--A----------------------C-AAA--AA-A-GT-CG-AA--AATAATTAT-T-TTAA-TATATA--------------ATGT---GTAGAGGGC---GCCG----GG-T-G-----C--GC----------------A----------C-CGT---------CTAAATCT-GCA--G-AT-AATT-CAA-AGTA-G-AGCTGG-TTTGA-TA-TCCAA-TC--AG-AT-ATACATGT----A--GGC-A-TG---ACC-TTTCaactgaggggtctgtnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnttaatgaggtgaaattaataaaatgacacaaaatttatgaggttttttttttttaaatataaaggaattaatagtaacaaaaaagtcgaaaataattattttaatatataatgtgtagagggcgccgggtgcgcaccgtctaaatctgcagataattcaaagtagagctggtttgatatccaatcagatatacatgtaggcatgacctttc
gi|40 : ctcgaacaggggcggatctaggatttgagtttataggggaactgaggggtctgtnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnTTTTTAATGAGGT--GAAATTGATAAGA--TGA-C-AC----AAT----TTTAAGAA------------------------TTTTT-----------------------T-----------GG--------------------AAAA-A-AA----TATA--AGTTCTAA-C-AA--TA
gi|43 : tttcagtactctaa-----GTTTCAAAC-CCTG---G--G-AA--AT---GACAAGTTGACCCT--GTG-TAAAAAGGGT-TT--ACT-----TATTTCCTCTCGCCC
gi|44 : -----ATGT------CTC----CCATGTAGTC-ATTTTCAA-TATTTT------A-TTTTTTATAAGGT--GAAAATGATAAAC--TGA-C-AC---Atg
gi|45 : GA--T-CAAG----GACGAG------TCC-AGGATTT-GA--GATTA-GATGCGGG-CGCA---ACTT--T----A-------TAAGGC
gi|46 : acg-AA-TGTGAA--------------TTTC---TTTGGGGGG---GGGG----GG-G-G-----G--GC----------------A------AATTT-CG----------A---A-CT-GTA--A-AT-AATT-TAA-Aagg
gi|47 : T-CTGTAATTTTTTTACTGGGA--AAAATTAATTAAA--TTA-C-AC---A
gi|5 : aagagaggtccgccgAA----TTTAAA-----------------------------TT-----------------------TTT------TTG----------------------AAA--A-AA----T-TA-----TCT-C---AA--TAAAA-GTA--A-CAATA--CGTC-A-ATTAACGTT-TA-ACTG-AGA--GAGA-GT-CG-AA--AATAATGAT-T-A-TA-TATGAA--------------AATT---GTAAGGGGG---CGGG----GG-------------C----------------A------GG-TTGCGC-------------A-CC-CCCTAA-AT-CATT-CAA-AGTA-G-CGACGG-TTTGG-TG-TTCCA-TC--AG-AT-A------C----A--GTC-C-TG---TTC-TTTCAAC-CGAA-ACG-TA-G-AC-AATT---TGCAtt
gi|51 : G-TGAG-ACG-TA-G-AT-AATT---TCCATAGG-aaacaaacaacatttgcaatgacaattaannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncattatatgtagcattttccagagttcggcaacttgatacaactattttgccttacc
gi|6 : TTTTTATAAGGT--GAAATTGACAAA---TGAAC-AC---AAAA----TTTAAGAGGTTTTTAAATATTTATTTATTTATTTTTTG----------------------TTT------TTGG----------------------AAT-AGAA----TATA--AATTTT-C-C-AAA-TAAAA-GCA--A-CAATA--ATTC-A-ATTGTCGTT-TA-TTTC-AAN--NNNN-NN-NN-NN--NNNNNNNNN-N-N-NN-N-NNNNNNNNNNNNNNNNNNATTTAATTTAGGGGGC---ACCG----GG-T-G-----C--GA----------------ACCGCTTAA-TC-CTC---------C---A-CT-GCC--G-AT-CATC-TAA-CGTA-G-CGCCGG-TCT-A-TG-TTCCA-TC--AC-AT-A------C----A--GAC-A-TG---ACC-TTTCAAG-TGAG-ACG-TA-G-AT-AGTT---CCCATTGG-TGT-AGactgtctttgaa
gi|7 : --T-CAAA----GGTGGAG-----TCC-AGGATTTTGATTGGT-A-TA-G-----CACACAAACTT--A----AGAGATTCTGAGGCCCTCAGAG-----GA----ATAA--GCTCCAAGAAGCTTCTGAATTTGTAACACATTTTA-TA----------AATGCTAGA---AGT-----ACGT------CCCTAAGCCATGCAGGC-ATTTTAAA-CATTTTACTGTC--TTTTCGATGAAGTTTAGAATTA-TAAAA--TGA-CAAC---AAAAAATTTTTCATGG------------------------TTTGA-----------------------TTT------C---A--------------------AAAG-A-AAGACGTGTA--AATTgactgtctttg
gi|8 : TTTATTAGGT--GAAATTAATAAAA--TGA-C-AC---AAAA----TTTAGAGG------------------------TTTTTAAAAAAAATTATTTATCTATTTATTT------TTGG----------------------AAT-A-AA----TATA--AATTCT-C-A-AA--TAAAA-GCA--A-CAATA--ATTC-A-AT-GTCGTT-T--TTTC-AAA--A-GA-GTTCT-AA--ACTAATGAT-T-A-A------------------------TT---TTAGGGGGACACGGGT----GC-G-AACC--C--GCT---------------A------AA-TC--AC---------C---A-CTAGCC--G-AT-TATT-CAA-AGTA-G-CGCGGG-TTTGA-TG-TTCCA-TC--AG-AT-A------C----A--GAC-A-TG---ACC-TTTCAAG-TGAA-ACG-TAGG-AT-AATT---TCCATAGGCCGT-AGtaattgtttaagtttgaaaaatagagtaaagggggaggggggatgcaaccttctaaatccgtcaactactaaatcca
gi|9 : --AATTCT-C-C-AAA-TAATA-GCA--ATCAATA--ATTC-A-ATTGTCGTT-TA-TTT--AAA--AAGA-GT-CCTAA--ACTAATGAT---A-AA-T-------------------ATT------------A---GGTG----CG-A-A-----C--TCCCTT------------A------AA-TG-CAC---------C---A-TT-GCC--G-AT-CATT-CAA-AGTA-G-CGACGG-GTTGA-TGTTTTCA-TCATAT-AT-A------C----A--G-C-A-TG---ACC-T-------------CG-TA---AT-AATT---TTCATAGG-CGT-AGtactgtctt
8 sequences could not be aligned to this reference sequence:
Unaligned ( gi|28 ): GGAGGAAACTTCTCGTAATGCAGACAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGAAAATTAAAGAAAGGTTATCAGAAAACTGAAGGGGACATTACAAATTATAAGTCAGATGC
Unaligned ( gi|31 ): GGATTTCGGGAGAAAATACTCTACTCGATAAACCACGCCCGTTCCGTCACCTGTTCTAAATTTATTATTGGACCTATGGCGCTAGCCTGACTTTAGTCGAAGGCAGTTTGAGAACTGTTTCTACTGCCTGTGTCGAAGGGGAAAAGAAATTC
Unaligned ( gi|37 ): TATTTAAATGGGGGTTATAAACACAAGAAAATTAAGAAAGTAATAGAAAACTGAAGGAGGGGGATGCAATATTATGTTCATATGCAGAAAAATGTATACAAGGGGGGGGGGG
Unaligned ( gi|41 ): GGGGGAGAAATTGAGGAAAACCGGCCTCCACTCAGATCAACAAGCCATTCCGTCGCCTGGTTCTAAAGTTATTTACAAGCGATCG
Unaligned ( gi|42 ): CTGTCTTATGAAGAGGGGGGAGGGGGGCAAACTTCTAAACTATATGCGACACAATGAACCAGAAATTTGATG
Unaligned ( gi|48 ): CTGTGACTTTGATGCAGAAGGGGGGGGGGGTAAACTTCTAAATTATGTGC
Unaligned ( gi|49 ): GCACAGAGTGGTATGGGGGAGAGACCTGTCAAACTTCTAGTATATGGA
Unaligned ( gi|50 ): AGTTCGAGAACCGTTTTACTGTCTGTGGCGATTTCGACTGGGTACA