lowQualScore : 1111111111111111111111111111111 111111111111111111111111111111111111111111111111111111
lowQualScore : 66666 11 5555555555555555555555 222 111111 111 66666666666666 1 33 11 2 2 3333333 33 111 1 22222 1111111111 4 666666666666666 1 1 2 33 444 22 2 22 1 333333333 111111 111 22 11 3 3 3 22 11 222222222 1 111 5555555 111 0000000000000000000000000000000 22 1 111 4 11 1 11 555555555555555555555 33 222 44444444 1 2 11 22 1 1 22 1 2 1 11 3333 1 11 2222 111111111111111111111111111111111111111111111111111111 11 44 1 1 111 444444444444444444444444444 111 2 11 7777777777777777777777777777777777 1 2 6666666 222 222 1 22 1 11 4 1 1 11 1 3 2 3333 3 1 333 111 1 222 11 11 1 1 1 1 2 22 1
lowQualScore : 8 88888 5 5 00 66 9999999999999999999999 0 444 333333 000 22222222222222 6 5 77 55 6 7 9999999 55 777 0 5 0 8 33333 8 3333333333 8 6 0 6 333333333333333 6 6 6 3 1 7 3 88 1 111 1 0 88 0 99 0 888888888 0 8 888888 8 555 66 11 0 5 0 888 5 0 5 55 22 5 66 222222222 0 6 0 0 0 8 444 8 1111111 0 0 8 444 9999999999999999999999999999999 66 0 111 0 33 2 9 2 99 44 111111111111111111111 7 00 444 88888888 3 3 00 7 00 3 6 6 3 7 00 0 7 0 2 7 0 33 8888 0 1 33 4444 111111111111111111111111111111111111111111111111111111 11 33 0 2 8 0 111 3 888888888888888888888888888 2 777 1 33 4444444444444444444444444444444444 0 7 1111111 111 8 111 0 55 5 6 88 0 3 6 6 7 3 55 3 1 7 6 8888 2 3 333 0 333 3 777 0 2 000 3 66 33 0 0 8 1 7 0 5 5 8 5 5 888 5 5 33 0
lowQualScore : . ..... . . .. .. ...................... . ... ...... ... .............. . . .. .. . . ....... .. ... . . . . ..... . .......... . . . . ............... . . . . . . . .. . ... . . .. . .. . ......... . . ...... . ... .. .. . . . ... . . . .. .. . .. ......... . . . . . . ... . ....... . . . ... ............................... .. . ... . .. . . . .. .. ..................... . .. ... ........ . . .. . .. . . . . . .. . . . . . . .. .... . . .. .... ...................................................... .. .. . . . . ... . ........................... . ... . .. .................................. . . ....... ... . ... . .. . . .. . . . . . . .. . . . . .... . . ... . ... . ... . . ... . .. .. . . . . . . . . . . . ... . . .. .
lowQualScore : 0 66666 0 0 66 11 4444444444444444444444 7 333 777777 000 55555555555555 7 5 55 88 7 5 5555555 55 888 8 8 8 0 44444 0 8888888888 0 7 0 7 000000000000000 2 7 7 3 0 7 7 55 7 000 0 8 66 0 00 6 555555555 2 8 888888 0 666 00 00 8 0 0 666 0 8 6 44 66 6 44 222222222 8 6 8 0 8 0 000 0 2222222 8 8 0 000 8888888888888888888888888888888 00 0 000 0 88 5 0 5 88 55 555555555555555555555 0 33 000 00000000 3 7 33 3 00 3 7 7 3 7 77 7 3 0 5 5 0 22 2222 0 0 88 0000 888888888888888888888888888888888888888888888888888888 55 00 0 5 8 0 000 2 222222222222222222222222222 0 555 2 88 5555555555555555555555555555555555 0 5 2222222 888 8 000 0 88 0 7 77 0 3 7 7 3 3 77 3 7 0 7 3333 5 8 555 0 555 2 555 0 5 555 2 77 88 0 0 8 2 3 7 4 7 6 7 0 888 0 0 00 0
consensus : TAT-CGAGG--G--TTG-TCCCA-AAAAG--TCGTG--GACA--------ATGT----TAAT-TAATTTCCAAACTACGA-CAT-CGG-TCCA---AAAGATATTTTTT---ACA-TTAATAACTTT-AACTTACATTCAAACAAAAG--TGT--AAAATTTAAAAACAA--ATAT-CATAT-CAAATAAATGAGCN-ATTTTCAG-ATCTAAGGA-GTGCTC--T-A-TGAGCCG-TGTTG-GCGCACGTAC-AAATA--A--AAGT-GT--ACATTTTCT-A-TG-ATCCATT-GGGTTAGATGA--AAGGGATATAGCTTCATAA-TATATATA-TTTGCATTCGAACTT-TATATCAACGGAATCATTTACGCGTTT-TGC--CC-TAT-T-ACACTAGG--GTTTTCAAGC-GTAAGA-CGTCATA-AAT-GGCAGAGAAATGACAGTCAT-TTTAAAACGGCTCTGTAAATGAA-TA-TTTTCAATGTAACGGCAACCACGACATTG-TCG---GCGCACA-GAT-AAAT-TATCAAAAT-TTGT---GTAGATCGCTAAACC-A-C-GA-TTGTTGG-TTCANA-TCAGACAAAACGGGAAGCTGGAAC-G-A-CATCA--GATCACAGGAATGTTAGCT-AAATACGACA-C-TTG-AA----A-TATT-TATAAATCATCAGT-ACAATGCC-C-TGCGCGTACATCG-CCG-AAATA-GATGT-GAACTCGTGGTTATC-GGACT-TCGACACCCCA-CCTTANTCCCTAGAC-TATATT-AGCACNGCTCGGATTTT-GCCTATTTTCTACTT-ATGANCGGAGGC-CAGCTTGAGGGGT--AAACG-T-TTG-------CATTTTGAAGGGA--------------GGA------T-AATN-G-A-GGAGCAGTGAGGAA-ATT-TCAACGTG-TCTCTG-A-ATCAGGCG---TTGGTTTGAAT-NTG--TGGTTTGACAAA---TGG-GTG--AAA--CGA-CATG-AAAA---ATGCATCGCGCA-T-CGGGGAC-AAT-ACT----T--GAAAAAAAAACTCTN--ATAA-CGTCATG-ACTT-GTGCGCCGGACAGATAT-GAACATAGGTGTTTGATTTTTGTT-TTATGTTAATATTAAGAGAT-ACA-TTTGATGAAAAT----TGTACAAAGT-AGTAAAC-AAATGTTATGCTA---ATAAAT-AGCAAAAGGAAAATTTAAT-CAAC--TTTCTTA-CA-AATAAACGAANTTATTAAACATTGC-CCAC-GA-CT---TTTTG-GGA-CAACCCTCGTA-TAT
Reference ( gi|1 ) : TAT-CGAGGT-GATTTG-TCCCA-AAAAG--TCGTG--GACA--------A-GT----TCATTTAATTTCCAAACTACGA-CAT-CAG-TCCA---AAAAATATGTGTT---A-A-T-AATAACTTT-AACTTACATTCAAACAAAAGATTGT--AAA-TTTACAAACAA--AT---CATATTCAAATAAATGAGAA-ATTTTCAG-ATCTAAGGA-GTGCTC--T-A-TGATCCA-TGTTG-G-GCACGTAC-AAATA-CA--AAGT-GT--ACATATTCT-A-TG-ATTCATTTGGGTTAGATGACTAAGGGATATAGCTTCATAAATATATATACTTTGCATTCGAATTTATATATCAACGGAATCATTTACGTGTGT-TGC--CC-TAT-C-ACACTAGG--GTTTTCAAGCCGTAAGAGCGTCAAA-AATCGGCAGAGAAATGACAGTCAT-CTTAAAACGGCTCTGTAAATGAA-TA-TTTTCATTGTAACGGCAACCACGACATTG-TCG---GCGCACA-GA--AAACATATCAAAAT-TTGT---GTAGATCGCTAAACC-A-C-GA-TTATTG--TTCAGA-TCAGACAAAACGGGAAGCTGGAAC-G-A-CA-CA--GATCACAGGAATGTTAGCT-AAATATGATAATTTTG-AA----A-TATT-CATAAATCATCAGT-TCAATGCCAC-TGCGCATACATTGGCTGCAAATA-GATGTAGAACTCGGGGTTATC-GGACT-TCGACACCCCA-CCTTAATCCCTAGAC-TACATT-AGCACCGCTCCGATTTT-GCCTATTTTCTACTT-ATGATCGCAGGC-CAGTTTGAGGGGT--AAACA-T-TTG-------TATTTTGAAGGGAC-------------GGA------T-AATA-G-A-GGAGCAGTAAGGAACATT-TCAACCTG-TTTCTG-A-ATCA-GCGT--TTGGTTGGGAT-TTG--TGCTTCGACAAA---TGGCGTG--AAA--C-A-CATGGAAAA---ATGGA---CACA-T-GGGGGAC-AATGACT----TTCGAAAAGGAAACGCTT--ATAA-CGTCATGGACTTGGTGCGCCGGACAG-TAT-GAACATAGGTGGTTGATTTTTGTT-TTATGTTAATTTTAAGAGAT-ACAGTTTTATG-AAAT---GTGTACAAAGTGAGTAAAC-AAATGTTCTGCTA---ATAAAT-AGCAAAAGGAAAATTTAAT-CAAC--TTTCTTA-CA-AATACACGAATTTATCAAACATTGT-C-AC-GA-CT---TTTTG-GGA-CAACCTGCGTA-TATTT
gi|2 : TAT-CGAGGTCGATT-G-TCCCATAAAAGAATCGTGTCGACA--------A-GT------ATATAATTTCCAACCTACGA-CATTCAG-TCCATAAAAGAATACTTTTT---ACA-T-AATAACTTT-AACTTACATTCAAACAAAAAGATGTTAAAA-TTTAACAACAA--ATATGCATATTCAAATAAATGAGAAGATTTTCAGTATCTAAGGAAGTGCTC--T-A-TGATCCAATGTTGCGCGCACGTACCAAATA-CA--AAGT-----ACATATTCT-AATGCATTCATT-GGGTTAGATGACTAAGGGATATAGCTTCATAA-TATATATACTTTGCATT-GAACTT-TATATCAACGGAATTCTTACCGTTTTTCTGC--CC-TAT-CCACACT-GG--GTTTTCAAG--GTAAGAGCGACAAA-AATGGGCAGAGAAATGACAGTCATTCTTAAAACGGCTCTGTAA-TGA--TA-TTTTCATT-TAACG-CAAC-ACGACATTGCTCG---G-GCACAAGATTAAAGATATCAAAAT-TTGTCTTGTAGATCGCTAAACCCA-CCGACTTATCG----CACA-TCAGACAAAACGGGA-GCTGGAACCG-A-CATCA--GAT-ACAGGAAT-TTAGCT-AAAT-TGATA-TTTTG-AA----ACTATTATATGAATCATCAGT-ACAATGCCACCTGCGCATACATTG-CTG-AAATA-GATGT-GAACTCCGGGTTATCCGGACTGTCGACACCCCAGCCTTAATCCCTAGACCTACATT-AGCACCGCTC-GATTTT-GCCTATTTTCTACT--ATGATCG-AGGC-CAGTTTGAGGGGT--AAACAAT-TTG-------TATTTTGAAGGA---------------GGA------TGAATA-GCA-GCAGCAGTAAGGAA-ATTCTCAACCTGATTTCTGCATATCA-GCGTGCTT--TTGGGATGTTG--TGACTCGACAAAATACGGCGTG--AAAAAC-AACATG-AAAA---ATG-A---CACA-TCGGGGGACCAATGACT----TT-GAAAAG--AACGCTT--ATAA-CGTCATG-ACTTGGT-CGCCGGACAGATAT-GAACATAGGTGGTTGATTTTTGTT-TTATGTTAA-TTTAAGAGAT-ACA--TTTATG-AAAT----TGTACAAAGT-AGTAAAC-AAATGTTCTGCTA---ATAAAT-AGCAAAA-GAAAATTTAAT-CAAC--TTTCTTA-CA-AATACACGAA
gi|14 : gcataTATACGAGG--G--TTG-TCCCA-AACAG--TTGTG--GGCA--------ATGTTGAATAATTCAATT
gi|6 : tttcataacaaat-CGAGG--G--TTG-TCCCA-AAAAG--TCGTG--GACA--------ATGT----TAA--TAATTTCCAAACTAC-A-CA---GA-TCCA---AAAGATAT-TTTT---ACATT-AATAACTTT-AACTTACA-TCAAACAAAAG--TGTA-AAA-TTTAAAAACAAATAT---CATAT--AAATAAATGAGCT-A-TTTCAG-AT---AAGA-GTGCTC--TAA-TGAGCCG-TGTTG-GCGCACGTAC-AAA----A--AAGT-GT--ACAT-TTTT-A-TG-ATCCAATTGGTTTAAATG---AAAGGATATAGCTTAAT-AATATATATA--TTGCATT-GAACTT-TATATCggtat
gi|5 : -CGAGG--G--TTGCTCCCA-AAAAGC-TCGTG--GACATGGTTGATA-AT----TCATTTAtggttattctctgctacaatgttttc
gi|12 : ccatatatagcaccgctcgattttagcctatttcatacttcatgaaaagtggcgcagcttgagcggtgcaaacatattgcatttggagaataatttgatggagcagttgaaatttaacgtgtctcctaacacggtgggtttgaaggctggtttgacaaatgaggtggaaaacgacatgaaaaatgcatcgcgcaatcggggaaaatacttgaaaaaaaaactctgataaacgtcatgactttgtgcgccgacagatataggacatagtctttaattttgttattctgttaatattaagagataacatttgatgaaaattcagtgtacaaattagtaaacaaatgatgcaaaaaatcagaaaaggaaagttaatactatttcttacagaa-CGAGG--G--TTG-TCCCA-AAAAG--TTTT----AAA--------A------------TAATTTCCAAA--ACAAGCAT-CAA-CCAA---AAAAAAACGTTTTTGGC-A-TGAATAACTCC-AACTTAT-TTCAAACAAA--ATTGT--AAACTTTA-AAACAAATAT---CATA-ACAAAC-AATGAtagtatg
gi|16 : aTTG-TACCA-AAAAG--TCGTG--GGCA--------ATGT----TGATatta
gi|11 : gggTTG-TCCCA-AAAAA--TCTTT--GGCA--------ATGT----T-GTAAAATTTCTAAAATACG--CAT-CAA-ACAA---ACAAACAa
gi|3 : cgagcg-TCTCC-AAAAG--TCGTG--GACA--------ATGT----TAAT--AATT-CCAAACTAC-A-CA---GA-TCCA---AAAGATATTT-TT---ACA-TTAATAACTTTTAACTTACAT-CAAACAAAAG--TGT--AAAATTTAAAAACAA--ATAT-CATA----AATAAATGAGCT-ATTT-CAG-AT---AAGA-GTGCTC--T-AATGAGCCG-TGTTG-GCGCACGTAC-AAATA------AGT-GT--ACATTTTCT-A-TG-ATCCATT-GGTTTAAATGA--AAGGATTATAGCTTAATAA---TATATA---TGCATT-GAACTT-TAT-TCAACGAAG--ATT-ATATGTTT-TGT--CT-AAT-T-ATACT-GG--ATTTTCAAGC-GCAAGA-CGTCATA-AAT-GGCAGAGAAATGAC-GTCAT-TTTAAAACGGATCTG--AATAAG-T---TTTCAATGTAACGGCAACCACG-CGTCG-TCG---GCGCACA-GA--TAAT-TA-CAAAGTGTTGT---GTAGATC-----------C-G--TGGTTGGATTC--A-TTAGACAAAACGGG-CGCT-GAAC-G-A-CATCAAGAATCACAAGAAT-TTA-CTAAAATATGACA---TTG-AA----A--A----ATAAATCATCAGTAACAATGCC-C-TGCACGTACA-----CGTGAATACGATGT-GAACTCGTGG-TATC--GACT-TCGACA-CCCA-CCTTATTCCCTACCT-TATA-T-AGCACGCCTCGGATTTG-GCCTATTTTCTAATT-ACNNNNNNNNNN-NNNNNNNNNNNNN--NNAC----TTAAGAAGGCCAGCTTGAGGGGGCAAACATTTGATTTGGAAGGAGAT-AATA-G-A-GGAGCAGTGAGGA--ATT-TCAACGTG-TTTCTG-A-ATCAGGCG----TGGTTTGAAG-ATG--TG-TTTGACAAA---TGG-GTG--AAA--CTA-C-----AAA---ACGCATCGCGCA-G-CGGGGAC-AAT-ACTAAAAT--GAAAAAG-AACTCTA--ATAA-CGTCAT-GACTT-GTGCGCC-AACAGATAT-GAACATAGGTGTTTGATTTTTGTT-TTATGTTAATATTAAGAGAT-ACATTTTGATGAAAAT---TTGTACAGAGT-AGT--ACTAAATG--ATGCTAATTATAAAT-AGCAAAAG--AAATTTAATACAAT--TTTCTTA-CA-AATAAACGAacaacaaaaaaaaaacaaaccccaaccccccaaaagaccccccctcccccaaatttggcctgaataactctaacttgcatcaaacaaatttgtaaactttgaaagaaatttcataacaaataattgaattatt
gi|4 : catatacgagggtAG--TCGTG--GACA--------ATGT----TAAT--AATTTCCAAACTACG--CAT-CAGATCCA---AAAA-TATTTTTT---ACA-TTAATAACTTT-AGCTTACAT-CAAACAAAAG--TGT--AAAATCTA-AAACAA--ATAT-CATAA-CAAATAAATGAGCG-ATTTAC----TCTA---------TC--T-G-----CCA-TGTTG-GAGCACGCAC-AAATGTCATTAA-------ACATTTTCT-A-TA-ATCCACT-GGGATAGATGA---AAGAATATAGCTTCATGA---TAGATATTTTGCATTCAAATTCATAT--CAACGGAATC-TGTG-GTGTTT-T-CTGCC-TAA-T-ACAC-AAG--GTTTTTAAGC-GTATGA-CGTCATA-AAT-GGTAGAG-----ACA---------------------TAAAT--A-GA-TTT--AATGTAACGGTAACCAAGACATTG-TCA---GCGCACA-GAT-AAAT-TATCAAATT-TTGT---GTAGATCGT-----------GG-TT-TTA--CTCCAACTCAGACAAAACGGGA-GATGGAAG-GGA-CATCA--GATCACAGAAATGTTAGC----ATACCATGACATTG-AACATAA-TATT-TAT----CATCATT-ACAATGCCCT-TGCGCACACATCGGCCA-AAATA-GATCTAGAACTCATGGTCATC-GGACT-TTGACACCC-A-CCTTGCTCCCTAGAC--ATATTTAGCACGGCTCAATTTTT-GCCTATTTTCTACTT-TTGA----ACGC-CAGCTTAAGGGGC--AAACG-T-TTG--------A-TTTGGATGGA---------------GA------T-ATTT-T-A-GGAGCAGTGGGGA--ATT-TCAACGTG-TCTCTG-A-ATCAGGCG----TGGTTTGAAT-GTG--TG-TTTGACTAA---TGG-GCG--AAA--CGG-CATGGAAAATGCATCG----CGCT-T-CGGGGAC-AAT-ACT----T----AAAAAAAACCCTCTGATAA-CGTCATG
gi|9 : TAATTTCCAAACTACG--CAT-CAGATCCA---AAAGAT-TTTTTT---ACA-TTAATAACTTT-AACTTACAT-CAAACAAAAG--TGT--AAAATTTA-AAACAA--ATAT-CATAT-CAAATACATGAGAA-ATTT-CAG-AT-TAAGGA-GTGCTCAGT-A-TGAGCCA-TGTTG-GCGCACGTAC-AATT--------------------TTCT-A-TG-ATTCATC-GGGTTAGATGA---AAGGATATAGCTTCATAAattt
gi|8 : caGTTG-GCGCAC-TAC-AAATA-----AGGTCGTGAACATTTTCTGA-TGGATCCATTGGGGGTA-ATGA--AAG--ATTTAACTTCATAA---TAAA-A--TCGCATTCAAATT---ATATCAACGGA--CATCTATGCATGT-TTT--CTGTATGT-ATACGAGGTCGTTT-CAAGC-GTAAGA-CGTCATGTAAT--GCAGGGAA-TGAC--TCAT-TTTAAA-CGTCTCTGTAA-TGAAGTT-TTCTCAATG-AACG-CAACCACGACCTTG-TTGTACGCGCACA-GAT-AAAT-TATC--AAT-TTGT---GTAGAT
gi|10 : c--CC-TAT-C-ACACT-GG--GTTTTCAAGC-GTAAGA-CGTCAAA-AAT-GGCAGAGAAATGAC-GTCAT-TTTAAAACGGCTCTGT-AATGAA-TATTTTTCATTGTAACGGCAACCACGACATTG-TCG---GCGCACA-GAT-AAAT-TATCAAAAT-TTGT---GTAGATCG-TAAACC-ACC-GA-TT-TTGATTCCAGC-TCAGACAAAACGGG-AGCTGtcgtgt
gi|13 : atgttttctgCAGACAAAACGG-AAGATGGAAC-G-AATATCA--GATCACAGGAATAATAGCA-AAATAAGACA---TTGAAA----A-TATT--ATA
gi|5 : T-AGCACCGCTC-GATTTTAGCCTATTTCATACTTCATGAAAAGTGGCGCAGCTTGAGCGGTGCAAACA-TATTG-------CATTT-----GGA--------------GAA------T-AATTTG-ATGGAGCAGT--TGAA-ATT-T-AACGTG-TCTCCT-A-A-CA--CGG--TGGGTTTGAA----GGCTGGTTTGACAAA---TGAGGTGGAAAA--CGA-CATG-AAAA---ATGCATCGCGCAAT-CGGGGAA-AAT-ACT----T--GAAAAAAAAACTCTG--ATAAACGTCATG-ACTTTGTGCGCCG-ACAGATATAGGACATAG-TCTTTAATTTT-GTTATTCTGTTAATATTAAGAGATAACA-TTTGATGAAAATTCAGTGTACAAA-TTAGTAAAC-AAATG--ATGC-A---AAAAATCAG-AAAAGGAAAG-TTAAT---ACTATTTCTTA-CAGAATAAATGAA-TTATCAACCA-TGTCC-AC-GAGCT---TTTTG-GGAGCAACCCTCGTAGTAT
gi|15 : ccatataTACAAAGT-AGTAA-C-AAATGTT--GCTA---ATAAAT-AGCAAAAG--AAATTTAAT-g
gi|14 : --TTTCATAACA-AATAATTGAATT-ATTCAACATTGC-CCAC-AA-CT---GTTTG-GGA-CAACCCTCGTA-TAtca
gi|3 : GAATT-ATTAA-CATTGT-CCAC-GA-CT---TTT---GGA-GAACCCTCGTA-TATggtat
gi|6 : cGAAATTATTAA-CATTGT-CCAC-GA-CT---TTTTG-GGA-CAACCcaaactacacagatccaaaagatatttttacattaataacttttaacttacatcaaacaaaagtgtaaaatttaaaaacaaatatcataaataaatgagctatttcagataagagtgctctaatgagccgtgttggcgcacgtacaaataagtgtacattttctatgatccattggtttaaatgaaaggattatagcttaataatatatatgcattgaactttattcaacgaagattatatgttttgtctaattatactggattttcaagcgcaagacgtcataaatggcagagaaatgacgtcattttaaaacggatctgaataagttttcaatgtaacggcaaccacgcgtcgtcggcgcacagataattacaaagtgttgtgtagatccgtggttggattcattagacaaaacgggcgctgaacgacatcaagaatcacaagaatttactaaaatatgacattgaaaaataaatcatcagtaacaatgccctgcacgtacacgtgaatacgatgtgaactcgtggtatcgacttcgacacccaccttattccctaccttatatagcacgcctcggatttggcctattttctaattacnnnnnnnnnnnnnnnnnnnnnnnnnacttaagaaggccagcttgagggggcaaacatttgatttggaaggagataatagaggagcagtgaggaatttcaacgtgtttctgaatcaggcgtggtttgaagatgtgtttgacaaatgggtgaaactacaaaacgcatcgcgcagcggggacaatactaaaatgaaaaagaactctaataacgtcatgacttgtgcgccaacagatatgaacataggtgtttgatttttgttttatgttaatattaagagatacattttgatgaaaatttgtacagagtagtactaaatgatgctaattataaatagcaaaagaaatttaatacaattttcttacaaataaacga
gi|7 : cgagAAATTATTACACATGGT-CCAC-GA-CTTTTTTTTGTGGA-CACCCT-CGTA-caaactacacagatccaaaagatatttttacattaataactttaacttacatcaaacaaaagtgtaaaatttaaaaacaaatatcatataaataaatgagctatttcagataagagtgctctaatgagccgtgttggcgcacgtacaaaaaagtgtacatttttatgatccaattggtttaaatgaaaggatatagcttaataatatatatattgcattgaactttatatctggttattctctgctacaatgttttc
gi|16 : TATCAA-CATTGC-CCAC-GA-CT---TTTTG-GTA-CAACCtcctaagatgatctgctcagatcctaatgatacttactttatttctcacattagatttaattcacacattagaacttgacaggcaaatgcaaaataagtgtaaatttttaaagcaggtaatatgcatatgaattaaatgaagcatatttatcagattaaggtggtctactcatcagaattgagaccaaataagttgcgcgcgacgtacagatactagggtgaacattttgccgatatattgattactaaat
gi|11 : gAACATTGC-C-AAAGA-TT---TTTTG-GGA-CAAC
gi|12 : cgagcA-CT---TTTTG-GGA-CAACCCTCGTgtaaaatttctaaaatacgcatcaaacaaacaaacaacaacaaaaaaaaaacaaaccccaaccccccaaaagaccccccctcccccaaatttggcctgaataactctaacttgcatcaaacaaatttgtaaactttgaaagaaatttcataacaaataattgaattatt
Alignments
lowQualScore : 111111 22222222 222222222222222222 22222222222222 111111 11 2 11 1 111 1111 1 3333333333333 1111 1 2222222 1 11 2222 1 2222222222222 222 1 111 11 1 11 1 11111 111 111 3333333333333333333333333 11 1 11 1 11 11111 333 22222222222 1 22 1 222222222 1 2 11 1 1 1 1 22 11 666666666666666666666666666666 1111 1 111 1111 222 11 111 1 11 11 11 1 2222222 1 1 1 1 2 222222 222 111 11 11 11 2 1 1 1
lowQualScore : 5 555555 5 5 888 66 66 3 66666666 444444444444444444 66 0 55555555555555 8 6 777 222222 00 4 0 66 777 22 4 4 0 777 8 555 4 2222 3 77 5 8 0 5 77 6666666666666 5 5555 66 0 5 5 0 6666666 0 3 5 5 1 5 5 5 1 55 666 5 2222 5 9 6 6666666666666 000 3 111 88 99 6 3 4 6 6 6 1 88 6 3 1 1 77777 7 6 111 6 99 6 6 111 6666666666666666666666666 555 88 8 6 0 11 3 44 99999 000 8 22222222222 3 0 33 0 2 666666666 0 0 33 3 22 0 2 2 0 1 6 999 1 3 8 88 1 00 8 11 444444444444444444444444444444 7777 0 1 3 111 8 2222 8 55 0 88 8 8 8 8 0 5 444 11 11 8 8 444 8 6 11 11 8 0 8 666 8 11 6 7777777 0 66 0 1 8 8 8 8 5 3 0 2 3 3 0 9 0 0 8 3 888888 8 0 0 8 111 0 444 8 00 0 00 11 8 8 0 7 1 3 6 0 0 3
lowQualScore : . ...... . . ... .. .. . ........ .................. .. . .............. . . ... ...... .. . . .. ... .. . . . ... . ... . .... . .. . . . . .. ............. . .... .. . . . . ....... . . . . . . . . . .. ... . .... . . . ............. ... . ... .. .. . . . . . . . .. . . . . ..... . . ... . .. . . ... ......................... ... .. . . . .. . .. ..... ... . ........... . . .. . . ......... . . .. . .. . . . . . . ... . . . .. . .. . .. .............................. .... . . . ... . .... . .. . .. . . . . . . ... .. .. . . ... . . .. .. . . . ... . .. . ....... . .. . . . . . . . . . . . . . . . . . . ...... . . . . ... . ... . .. . .. .. . . . . . . . . . .
lowQualScore : 7 999999 7 7 888 99 99 2 22222222 666666666666666666 99 2 11111111111111 1 2 888 888888 66 4 9 11 888 22 4 7 7 888 9 111 4 4444 2 44 7 6 7 7 99 6666666666666 7 0000 99 0 0 0 1 6666666 1 8 7 7 4 7 7 7 7 77 777 7 8888 0 3 7 0000000000000 888 5 888 77 22 7 3 0 7 7 7 7 00 7 2 3 0 55555 8 7 777 7 22 7 7 777 8888888888888888888888888 222 77 0 0 8 00 2 00 44444 666 0 22222222222 8 0 88 0 0 000000000 0 0 22 2 55 0 5 5 0 0 0 666 0 2 0 88 0 22 0 00 000000000000000000000000000000 0000 6 8 2 222 0 0000 0 22 8 88 0 0 0 0 8 0 222 00 66 0 2 000 0 0 00 00 2 8 0 444 0 00 0 0000000 8 22 6 0 0 0 0 0 0 2 0 5 0 2 0 8 0 0 8 2 222222 0 8 8 0 666 8 000 0 66 8 55 00 0 0 6 0 0 2 5 0 0 3
consensus : TAT-CGAGG---G--TTGTCC-CA-AAA---AG--TCGTG--GACAATGT--TAATT-AATTTCCAAACTACGA-C-AT-C------GG-TCCA--AAAGA---------TA---TTTTTTACATTAA---TAACT------TT--AACTT-ACAT-CAAA--CAA---AAG--TGT-AAAATTTAAAAACA---AATAT-CATAT-CAAATAAATG-AGC-N-ATTT-TCAG-ATCTAAGGA-GTGCTC--T-A-----------TGAG-CC--G-T--GTTG-GCGC-ACGTAC-AAATA--AAA--GTGNACATTTTCT-A-TG-ATCC-ATT-GGGT-TAGATGA--AAGGGATATAGCTTCATAA-TATATATA-TTTGCATTCGAACTT-TATATCAACGGAATCATTTACGC--GTTTT---GCCCTAT-C-ACACTAGG--GTTTTCAAGC-GTAAGA-CGTCANA-AAT-GG-CAGAGAAATGACAGTCATT-TTAAAACGGCTCTGTAAATGAA-TA-TTTTCAATGTAACGGCAACCACGACATTG-TCG---GCGCACA-GAT--AAAT-TATCAAAAT-TTGT---GTAGATCGCTAAACC-A-C-GA-TTATTGATT-CAGATCAGACAAAACGGGAAGCTGGAAC-G-ACATCA--GATCACAGGAATGTTAGCT-AAATAT---GACA--TTT-GAA----A-TATT-TATAAATCATCAGT-ACAATGCCA-CT-GCGCATACATC-G-CCG-AAATA-GATGTAGAACTCGNGGTTATC-GGACT-TCGACACCCCA-CCTTANTCCCTAGAC-TATAT-TAGCACCGCTCGGATTTT-GCCTATTTTCTACTT-ATGANCG-AGGC-CAGCTTGAGGGGT--AAAC------------G-T-TTG----------CAT----TTTGGAGGGA-GGAT-AATA-G-A-GGAGCAGTGAGGAA-ATT-TCAACGTG-TTTCTG-A-ATCAGGCG-TTGGTTT--GAATGT-GTGGTTCGACAAA---TG-GCGTG--AAA--CGACAT-GAAAAATGCATCGCGCA-TCGGGGA--CAATGACT----TT-GAAAAAAAAACTCTNAT-AACGTCAT-GAC-TT-GTGCGCCGGACAGATAT-GAACATAGGTGNTTGATTTTTGTT-TTATGTTAATATTAAGAGAT-ACA-TTTGATGAAAA-T----TGTACAAAGT-AGTAAAC-AAATGTTNTGCTA---ATAAAT-AGCAAAAGGAAAATTTAAT-CAAC--TTTCTTA-CA-AATAAACGAA-TTATCAAACATTGCCCACGA-CTTTTTGGGA-CAACCCTCGTA-TAT
Reference ( family-302 ) : TAT-CGAGG---G--TTGTCC-CA-AAA---AG--TCGTG--GACAATGT--TAATT-AATTTCCAAACTACGA-C-AT-C------GG-TCCA--AAAGA---------TA---TTTTTTACATTAA---TAACT------TT--AACTT-ACATTCAAA--CAA---AAG--TGT-AAAATTTAAAAACA---AATAT-CATAT-CAAATAAATG-AGC-N-ATTT-TCAG-ATCTAAGGA-GTGCTC--T-A-----------TGAG-CC--G-T--GTTG-GCGC-ACGTAC-AAATA--AAA--GTGTACATTTTCT-A-TG-ATCC-ATT-GGGT-TAGATGA--AAGGGATATAGCTTCATAA-TATATATA-TTTGCATTCGAACTT-TATATCAACGGAATCATTTACGC--GTTTT---GCCCTAT-T-ACACTAGG--GTTTTCAAGC-GTAAGA-CGTCATA-AAT-GG-CAGAGAAATGACAGTCATT-TTAAAACGGCTCTGTAAATGAA-TA-TTTTCAATGTAACGGCAACCACGACATTG-TCG---GCGCACA-GAT--AAAT-TATCAAAAT-TTGT---GTAGATCGCTAAACC-A-C-GA-TTGTTGGTT-CANATCAGACAAAACGGGAAGCTGGAAC-G-ACATCA--GATCACAGGAATGTTAGCT-AAATAC---GACA--CTT-GAA----A-TATT-TATAAATCATCAGT-ACAATGCC--CT-GCGCGTACATC-G-CCG-AAATA-GATGT-GAACTCGTGGTTATC-GGACT-TCGACACCCCA-CCTTANTCCCTAGAC-TATAT-TAGCACNGCTCGGATTTT-GCCTATTTTCTACTT-ATGANCGGAGGC-CAGCTTGAGGGGT--AAAC------------G-T-TTG----------CAT----TTTGAAGGGA-GGAT-AATN-G-A-GGAGCAGTGAGGAA-ATT-TCAACGTG-TCTCTG-A-ATCAGGCG-TTGGTTT--GAATNT-GTGGTTTGACAAA---TG-G-GTG--AAA--CGACAT-GAAAAATGCATCGCGCA-TCGGGGA--CAAT-ACT----T--GAAAAAAAAACTCTNAT-AACGTCAT-GAC-TT-GTGCGCCGGACAGATAT-GAACATAGGTGTTTGATTTTTGTT-TTATGTTAATATTAAGAGAT-ACA-TTTGATGAAAA-T----TGTACAAAGT-AGTAAAC-AAATGTTATGCTA---ATAAAT-AGCAAAAGGAAAATTTAAT-CAAC--TTTCTTA-CA-AATAAACGAANTTATTAAACATTGCCCACGA-CTTTTTGGGA-CAACCCTCGTA-TAT
gi|1 : TAT-CGAGGT--GATTTGTCC-CA-AAA---AG--TCGTG--GACAA-GT--TCATTTAATTTCCAAACTACGA-C-AT-C------AG-TCCA--AAAAA---------TA---TGTGTTA-AT-AA---TAACT------TT--AACTT-ACATTCAAA--CAA---AAGATTGT-AAA-TTTACAAACA---AAT---CATATTCAAATAAATG-AGA-A-ATTT-TCAG-ATCTAAGGA-GTGCTC--T-A-----------TGAT-CC--A-T--GTTG-G-GC-ACGTAC-AAATAC-AAA--GTGTACATATTCT-A-TG-ATTC-ATTTGGGT-TAGATGACTAAGGGATATAGCTTCATAAATATATATACTTTGCATTCGAATTTATATATCAACGGAATCATTTACGT--GTGTT---GCCCTAT-C-ACACTAGG--GTTTTCAAGCCGTAAGAGCGTCAAA-AATCGG-CAGAGAAATGACAGTCATC-TTAAAACGGCTCTGTAAATGAA-TA-TTTTCATTGTAACGGCAACCACGACATTG-TCG---GCGCACA-GA---AAACATATCAAAAT-TTGT---GTAGATCGCTAAACC-A-C-GA-TTATT-GTT-CAGATCAGACAAAACGGGAAGCTGGAAC-G-ACA-CA--GATCACAGGAATGTTAGCT-AAATAT---GATAATTTT-GAA----A-TATT-CATAAATCATCAGT-TCAATGCCA-CT-GCGCATACATTGG-CTGCAAATA-GATGTAGAACTCGGGGTTATC-GGACT-TCGACACCCCA-CCTTAATCCCTAGAC-TACAT-TAGCACCGCTCCGATTTT-GCCTATTTTCTACTT-ATGATCGCAGGC-CAGTTTGAGGGGT--AAAC------------A-T-TTG----------TAT----TTTGAAGGGACGGAT-AATA-G-A-GGAGCAGTAAGGAACATT-TCAACCTG-TTTCTG-A-ATCA-GCGTTTGGTTG--GGATTT-GTGCTTCGACAAA---TG-GCGTG--AAA--C-ACATGGAAAAATGGA---CACA-TGGGGGA--CAATGACT----TTCGAAAAGGAAACGCTTAT-AACGTCATGGAC-TTGGTGCGCCGGACAG-TAT-GAACATAGGTGGTTGATTTTTGTT-TTATGTTAATTTTAAGAGAT-ACAGTTTTATGAAAT-G----TGTACAAAGTGAGTAAAC-AAATGTTCTGCTA---ATAAAT-AGCAAAAGGAAAATTTAAT-CAAC--TTTCTTA-CA-AATACACGAATTTATCAAACATTG-TCACGA-CTTTTTGGGA-CAACCTGCGTA-TAT
gi|10 : TTCT---GCC-TAT-C-ACACT-GG--GTTTTCAAGC-GTAAGA-CGTCAAA-AAT-GG-CAGAGAAATGAC-GTCATT-TTAAAACGGCTCTGT-AATGAA-TATTTTTCATTGTAACGGCAACCACGACATTG-TCG---GCGCACA-GAT--AAAT-TATCAAAAT-TTGT---GTAGATCG-TAAACC-ACC-GA-TT-TTGATTCCAGCTCAGACAAAACGGG-AGCTGtt
gi|11 : atgtt-CGAGC---G--TTGTCC-CA-AAA---AA--TCTTT--GGCAATGTTGTAA---AATTTCTAAAATACG--C-AT-C------
gi|11 : AA---TAACT------CT--AACTT-GCAT-CAAA--CAA---ATT--TGT-AAACTTTGAAAG-A---AATTT-CATAA-CAAATAATTG-AAT-T-ATTaaacaaacaaacaacaacaaaaaaaaaacaaaccccaaccccccaaaagaccccccctcccccaaatttggcctgaataactctaacttgcatcaaacaaatttgtaaactttgaaagaaatttcataacaaataattgaattatt
gi|12 : cgagcgttgtcccaaaaaatctttggcaatgttgtaaaatttctaaaatacgcatcaaacaaacaaacaacaacaaaaaaaaaacaaaccccaaccccccaaaagaccccccctcccccaaatttggcctg-CGAGG---G--TTGTCC-CA-AAA---AG--T-----------TTT--AAAAT-AATTTCCAAA--ACAAGC-AT-C------AA--CCA--AAAAA---------AAACGTTTTTGGCATGAA---TAACT------CC--AACTT-AT-TTCAAA--CAA---AAT--TGT-AAACTTTAAAA-CA---AATAT-CATAA-CAAAC-AATG-A
gi|13 : aCAGACAAAAC-GGAAGATGGAAC-GAATATCA--GATCACAGGAATAATAGCA-AAATAA---GACA--TTG-AAA----A-TA-T-TATAatta
gi|14 : --TTTCATAACA-AATAATTGAA-TTATTCAACATTGCCCACAA-CTGTTTGGGA-CAACCCTCGTA-TA
gi|15 : TACAAAGT-AGTAA-C-AAATGTT--GCTA---ATAAAT-AGCAAAAG--AAATTTAAT-ggtat
gi|16 : AACATTGCCCACGA-CTTTTTGGTA-CAACCCtca
gi|2 : TAT-CGAGGTCGA--TTGTCC-CATAAA---AGAATCGTGTCGACAA-GTA-TA--T-AATTTCCAACCTACGA-C-ATTC------AG-TCCATAAAAGAA--------TA---CTTTTTACAT-AA---TAACT------TT--AACTT-ACATTCAAA--CAA---AAAGATGTTAAAATTTAACAACA---AATATGCATATTCAAATAAATG-AGA-AGATTT-TCAGTATCTAAGGAAGTGCTC--T-A-----------TGAT-CC--AAT--GTTGCGCGC-ACGTACCAAATA--CAA--A-GTACATATTCT-AATGCATTC-ATT-GGGT-TAGATGACTAAGGGATATAGCTTCATAA-TATATATACTTTGCATT-GAACTT-TATATCAACGGAATT-CTTAC-C--GTTTTTCTGCCCTAT-CCACACT-GG--GTTTTCAAG--GTAAGAGCGACAAA-AAT-GGGCAGAGAAATGACAGTCATTCTTAAAACGGCTCTGTAA-TGA--TA-TTTTCA-TTTAACG-CAAC-ACGACATTGCTCG---G-GCACAAGATTAAAGA-TATCAAAAT-TTGTCTTGTAGATCGCTAAACCCA-CCGACTTATCG----CACATCAGACAAAACGGGA-GCTGGAACCG-ACATCA--GAT-ACAGGAAT-TTAGCT-AAAT-T---GATA--TTTTGAA----ACTATTATATGAATCATCAGT-ACAATGCCACCT-GCGCATACATT-G-CTG-AAATA-GATGT-GAACTCCGGGTTATCCGGACTGTCGACACCCCAGCCTTAATCCCTAGACCTACAT-TAGCACCGCTCG-ATTTT-GCCTATTTTCTACT--ATGATCG-AGGC-CAGTTTGAGGGGT--AAAC------------AAT-TTG----------TAT----TTTGAAGG-A-GGATGAATA-GCA-GCAGCAGTAAGGAA-ATTCTCAACCTGATTTCTGCATATCAG-CG-T-GCTTTTGGGATGTTGTGACTCGACAAAATACG-GCGTG--AAAAACAACAT-GAAAAATG----ACACA-TCGGGGGACCAATGACT----TT-GAAAAGAA--CGCTTAT-AACGTCAT-GAC-TT-GGTCGCCGGACAGATAT-GAACATAGGTGGTTGATTTTTGTT-TTATGTTAAT-TTAAGAGAT-ACA-TTT-ATG-AAA-T----TGTACAAAGT-AGTAAAC-AAATGTTCTGCTA---ATAAAT-AGCAAAA-GAAAATTTAAT-CAAC--TTTCTTA-CA-AATACACGAAgata
gi|3 : gcataTATACGAGG---G--TTCTCC----AAA---AG--TCGTG--GACAATGT--TAAT--AATT-CCAAACTAC-A-C-A---------GA-TCCA--AAAGA---------TA---TTTTT-ACATTAA---TAACT------TTT-AACTT-ACAT-CAAA--CAA---AAG--TGT-AAAATTTAAAAACA---AATAT-CATA----AATAAATG-AGC-T-ATTT--CAG-AT---AAGA-GTGCTC--T-AA----------TGAG-CC--G-T--GTTG-GCGC-ACGTAC-AAATA--A----GTGTACATTTTCT-A-TG-ATCC-ATT-GGTT-TAAATGA--AAGGATTATAGCTTAATAA-TATATA-----TGCATT-GAACTT-TAT-TCAACGAAG--A-TTATAT--GTTTT---GTCTAAT-T-ATACT-GG--ATTTTCAAGC-GCAAGA-CGTCATA-AAT-GG-CAGAGAAATGAC-GTCATT-TTAAAACGGATCTG--AATAA---G-TTTTCAATGTAACGGCAACCACG-CGTCG-TCG---GCGCACA-GAT---AAT-TA-CAAAGTGTTGT---GTAGAT-------CC-G-T-GG-TTG--GATT-C--ATTAGACAAAACGGG-CGCT-GAAC-G-ACATCAAGAATCACAAGAAT-TTA-CTAAAATAT---GACA---TT-GAA----A--A----ATAAATCATCAGTAACAATGCC--CT-GCACGTACA-C-G-T---GAATACGATGT-GAACTCGTGG-TATC--GACT-TCGACA-CCCA-CCTTATTCCCTACCT-TATA--TAGCACGCCTCGGATTTG-GCCTATTTTCTAATT-ACNNNNNNNNNN-NNNNNNNNNNNNN--NNACTTAAGAAGGCCAG-C-TTGAGGGGGCAAACATTTGATTTGGAAGGA--GAT-AATA-G-A-GGAGCAGTGAGG-A-ATT-TCAACGTG-TTTCTG-A-ATCAGGCG--TGGTTT--GAAGAT-GT-GTTTGACAAA---TG-G-GTG--AAA--CTAC-----AAAACGCATCGCGCA-GCGGGGA--CAAT-ACTAAAAT--G-AAAAAGAACTCTAAT-AACGTCAT-GAC-TT-GTGCGCC-AACAGATAT-GAACATAGGTGTTTGATTTTTGTT-TTATGTTAATATTAAGAGAT-ACATTTTGATGAAAATT----TGTACAGAGT-AGT--ACTAAATG--ATGCTAATTATAAAT-AGCAAAAG--AAATTTAATACAAT--TTTCTTA-CA-AATAAACGA
gi|4 : ca---AG--TCGTG--GACAATGT--TAAT--AATTTCCAAACTACG--C-AT-C------AGATCCA--AAA-A---------TA---TTTTTTACATTAA---TAACT------TT--AGCTT-ACAT-CAAA--CAA---AAG--TGT-AAAATCTAAAA-CA---AATAT-CATAA-CAAATAAATG-AGC-G-ATTT-AC----TCTA---------TC--T----------------G-CC--A-T--GTTG-GAGC-ACGCAC-AAATG--TCA--TTAAACATTTTCT-A-TA-ATCC-ACT-GGGA-TAGATGA--AAGA-ATATAGCTTCATGA-TAGATAT--TTTGCATTCAAA-TT-CATATCAACGGAATC-TGTG-GT--GTTTTCT-GCC-TAA-T-ACAC-AAG--GTTTTTAAGC-GTATGA-CGTCATA-AAT-GG-TAGAG-----ACA---------------------TAAAT--A-GA-TTT--AATGTAACGGTAACCAAGACATTG-TCA---GCGCACA-GAT--AAAT-TATCAAATT-TTGT---GTAGATCGT-----------GG-TT-TTACTC-CAACTCAGACAAAACGGGA-GATGGAAG-GGACATCA--GATCACAGAAATGTTAGC----ATACCATGACA---TT-GAACATAA-TATT-TAT----CATCATT-ACAATGCC--CTTGCGCACACATC-GGCCA-AAATA-GATCTAGAACTCATGGTCATC-GGACT-TTGACACCC-A-CCTTGCTCCCTAGACATAT-T-TAGCACGGCTCAATTTTT-GCCTATTTTCTACTT-TTGAACG----C-CAGCTTAAGGGGC--AAAC------------G-T-TTG-----------AT----TT-GGATGGA-G-AT-ATTT-T-A-GGAGCAGTGGGGAA--TT-TCAACGTG-TCTCTG-A-ATCAGGCG-T-GGTTT--GAATGT-GTG-TTTGACTAA---TG-G-GCG--AAA--CGGCAT-GGAAAATGCATCGCGCT-TCGGGGA--CAAT-ACT----T--AAAAAAAACCCTCTGAT-AACGTCAT-GAT-TT-
gi|5 : C-CATATATAGCACCGCTCG-ATTTTAGCCTATTTCATACTTCATGAAAAGTGGCGCAGCTTGAGCGGTGCAAAC------------A-TATTG----------CAT----TT-----GGA-GAAT-AATTTG-ATGGAGCAGTT--GAA-ATT-T-AACGTG-TCTCCT-A-A-CACG-G-TGGGTTT--GAAGGC--TGGTTTGACAAA---TGAG-GTGGAAAA--CGACAT-GAAAAATGCATCGCGCAATCGGGGA--AAAT-ACT----T--GAAAAAAAAACTCTGATAAACGTCAT-GACTTT-GTGCGCC-GACAGATATAGGACATA-GTCTTTAA-TTTTGTTATTCTGTTAATATTAAGAGATAACA-TTTGATGAAAA-TTCAGTGTACAAATT-AGTAAAC-AAATG--ATGC-A---AAAAATCAG-AAAAGGAAAG-TTAAT---ACTATTTCTTA-CAGAATAAATGAA-TTATCAACCA-TGTCCACGAGCTTTTTGGGAGCAACCCTCGTAGTAT
gi|6 : -CGAGG---G--TTGTCC-CA-AAA---AG--TCGTG--GACAATGT--TAAT--AATTTCCAAACTAC-A-C-A---------GA-TCCA--AAAGA---------TA---TTTTT-ACATTAA---TAACT------TT--AACTT-ACAT-CAAA--CAA---AAG--TGT-AAAATTTAAAAACA---AATAT-CATAT--AAATAAATG-AGC-T-A-TT-TCAG-AT---AAGA-GTGCTC--TAA-----------TGAG-CC--G-T--GTTG-GCGC-ACGTAC-AA--A--AAA--GTGTACATTTT-T-A-TG-ATCCAATT-GGTT-TAAATGA--AA-GGATATAGCTTAATAA-TATATATA--TTGCATT-GAACTT-TATATCg
gi|7 : -CGAGG---G--T-GTCCACA-AAAAAAAG--TCGTG--GACCATGTG-TAA-T-AATTTTC---CTAAGA-TGAT-CTGCTCAGA-TCCT--AATGATACTTACTTTA---TTTCTCACATTAGATTTAATTCACACATTAGAACTTGACAGGCAAATGCAAAATAAG--TGT-AAATTTTTAAAGCAGGTAATATGCATAT-GAATTAAATGAAGCAT-ATTTATCAG-AT-TAAG---GTGGTC--T-ACTCATCAGAATTGAGACCAAA-TAAGTTGCGCGCGACGTAC-AGATACTAGG--GTGAACATTTTtggttattctctgctacaatgttttc
gi|8 : ta--GTTG-GCGC-AC-TAC-AAATA--AGGTCGTGAACATTTTCTGA-TGGATCC-ATT-GGGGGTA-ATGA--AAG--ATTTAACTTCATAA-TAAA---A-TC-GCATTCAAA--T-TATATCAACGGA--CATCTATGCATGTTTT----CTGTATGT-ATACGAGGTCGTTT-CAAGC-GTAAGA-CGTCATGTAAT--G-CAG-GGAATGAC--TCATT-TT-AAACGTCTCTGT-AATGAAGTT-TTCTCAATG-AAC-GCAACCACGACCTTG-TTGTACGCGCACA-GAT--AAAT-TATC--AAT-TTGT---GTAGATgccgatatattgattactaaat
gi|9 : cT-AATTTCCAAACTACG--C-AT-C------AGATCCA--AAAGA---------T----TTTTTTACATTAA---TAACT------TT--AACTT-ACAT-CAAA--CAA---AAG--TGT-AAAATTTAAAA-CA---AATAT-CATAT-CAAATACATG-AGA-A-A-TT-TCAG-AT-TAAGGA-GTGCTCAGT-A-----------TGAG-CC--A-T--GTTG-GCGC-ACGTAC-A-----------------ATTTTCT-A-TG-ATTC-ATC-GGGT-TAGATGA--AA-GGATATAGCTTCATAA-tcgtgt
Alignments
lowQualScore : 111111 22222222 222222222222222222 222222222 111111 1 111111 111 1111 1 3333333333333 1111 1 2222222222 1 11 2222 1 2222222222222 222 111 11 1 11 11111 111 111 2222222222222222222222222 11 111 11 1 111 1111 111111 1 111 22222222 1 1 11 1 1 1 11 111 1 1111 2222 11 666666666666666666666666666666 11111 11 1111 11 222 11 1 111 1 11 11 11 222222222222 11 1 1 1 1 2 222222 222 111 11 11 11 1 1 1 1
lowQualScore : 5 555555 5 5 888 66 66 3 55555555 444444444444444444 66 0 5 888888888 6 777 4 222222 66 4 3 66 777777 4 4 1 5 777 8 222 4 2222 3 77 5 8 0 5 77 6666666666666 5 5555 66 0 5 5 4444444444 55 5 5 1 5 5 5 1 55 666 5 2222 5 9 6 6666666666666 000 7 777 88 99 6 3 1 6 6 6 3 88 6 3 3 7 1 77777 7 6 6 111 6 99 6 6 111 8888888888888888888888888 444 88 111 8 0 11 3 99 0 111 88 7777 444444 0 0 333 66666666 0 5 11 3 22 0 5 0 1 11 666 3 8 3333 1 1111 8 11 444444444444444444444444444444 0 77777 1 3 88 8 2222 8 22 3 8 8 8 8 8 0 5 444 11 0 8 0 444 5 11 11 8 0 8 666 8 11 111111111111 0 11 0 1 8 8 8 8 5 3 0 2 1 3 0 9 0 0 8 3 888888 8 0 0 8 000 0 444 8 00 0 00 11 8 8 0 0 9 3 6 0 0 3
lowQualScore : . ...... . . ... .. .. . ........ .................. .. . . ......... . ... . ...... .. . . .. ...... . . . . ... . ... . .... . .. . . . . .. ............. . .... .. . . . .......... .. . . . . . . . .. ... . .... . . . ............. ... . ... .. .. . . . . . . . .. . . . . . ..... . . . ... . .. . . ... ......................... ... .. ... . . .. . .. . ... .. .... ...... . . ... ........ . . .. . .. . . . . .. ... . . .... . .... . .. .............................. . ..... . . .. . .... . .. . . . . . . . . ... .. . . . ... . .. .. . . . ... . .. ............ . .. . . . . . . . . . . . . . . . . . . ...... . . . . ... . ... . .. . .. .. . . . . . . . . . .
lowQualScore : 7 999999 7 7 888 99 99 2 55555555 666666666666666666 99 2 0 888888888 2 888 4 888888 11 4 3 11 333333 4 7 0 2 888 9 333 4 4444 2 44 7 6 7 7 99 6666666666666 7 0000 99 0 0 0 8888888888 99 7 7 4 7 7 7 7 77 777 7 8888 0 3 7 0000000000000 888 8 000 77 22 7 3 0 7 7 7 2 00 7 2 2 3 0 55555 8 7 7 777 7 22 7 7 777 0000000000000000000000000 666 77 000 0 8 00 2 44 8 888 66 0000 000000 8 0 222 00000000 0 5 22 2 55 0 0 0 0 88 888 2 0 0000 0 2222 0 00 000000000000000000000000000000 8 88888 4 2 00 0 4444 0 00 8 0 0 0 0 0 8 0 222 00 6 0 0 000 0 00 00 2 8 0 444 0 00 444444444444 8 00 6 0 0 0 0 0 0 2 0 5 0 2 0 8 0 0 8 2 222222 0 8 8 0 000 8 000 0 66 8 55 00 0 0 6 0 2 2 5 0 0 3
consensus : TAT-CGAGG---G--TTGTCC-CA-AAAA---G--TCGTG--GACAATGT--TAATT-AATTTCCAAACTACGA-C-AT-C------GG-TCCA--AAAGA-TA---------TTTTTTACATTAA---TAAC-T------TTA--ACTT-ACAT-CAAA--CAAAA---G--TGT-AAAATTTAAAAACA---AATAT-CATAT-CAAATAAATG-AGC-N-ATTT-TCAG-ATCTAAGGA-GTGCTC--T-A-----------TGAG-CC--G-T--GTTG-GCGC-ACGTAC-AAATAC-AAA--GTGNACATTTTCT-A-TG-ATCC-ATT-GGGT-TAGATGA--AAGGGATATAGCTTCATAA-TATATATA-TTTGCATTCGAACTT-TATATCAACGGAATCATTTACGC--GTTTT---GCCCTAT-C-ACACTAGG--GTTTTCAAGC-GTAAGA-CGTCANA-AAT-GG-CAGAGAAATGACAGTCATT-TTAAAACGGCTCTGTAAATGAA-TA-TTTTCAATGTAACGGCAACCACGACATTG-TCG---GCGCACA-GAT--AAAT-TATCAAAAT-TTGT---GTAGATCGCTAAACC-A-C-GA-TTATTGATT-CAGATCAGACAAAACGGGAAGCTGGAA-C-G-ACATCA--GATCACAGGAATGTTAGCT-AAATATGACA--TTT-GA----AA-TATT-TATAAATCATCAGT-ACAATGCCAC-TGCGCATACATCGGCCG-AAATA-GATGTAGAACTCGNGGTTATC-GGACT-TCGACACCCCA-CCTTANTCCCTAGAC-TATA-T-TAGCACCGCTCGGATTTT-GCCTATTTTCTACTT-A-TGANC-G-AGGC-CAGCTTGAGGGGT--AAAC------------G-T-TTG----------CATTT----TGGAGGGA-GGAT-AATA-G-A-GGAGCAGTGAGGAA-ATT-TCAACGTG-TTTCTG-A-ATCAGGCG-TTGGTTT--GAATGT-GTGGTTCGACAAA---TGGCGTG--AAA--CGACAT-GAAAAATGCATCGCGC-ATCGGGGA--CAATGACT---TT-GAAAAAAAAA--CTCTNAT-AACGTCAT-GAC-TT-GTGCGCCGGACAGATAT-GAACATAGGTGNTTGATTTTTGTT-TTATGTTAATATTAAGAGAT-ACA-TTTGATGAAAA-T----TGTACAAAGT-AGTAAAC-AAATGTTNTGCTA---ATAAAT-AGCAAAAGGAAAATTTAAT-CAAC--TTTCTTA-CA-AATAAACGAA-TTATCAAACATTGCCCACGA-CTTTTTGGGA-CAACCCTCGTA-TAT
Reference ( family-302 ) : TAT-CGAGG---G--TTGTCC-CA-AAAA---G--TCGTG--GACAATGT--TAATT-AATTTCCAAACTACGA-C-AT-C------GG-TCCA--AAAGA-TA---------TTTTTTACATTAA---TAAC-T------TTA--ACTT-ACAT-CAAA--CAAAA---G--TGT-AAAATTTAAAAACA---AATAT-CATAT-CAAATAAATG-AGC-N-ATTT-TCAG-ATCTAAGGA-GTGCTC--T-A-----------TGAG-CC--G-T--GTTG-GCGC-ACGTAC-AAATA--AAA--GTGNACATTTTCT-A-TG-ATCC-ATT-GGGT-TAGATGA--AAGGGATATAGCTTCATAA-TATATATA-TTTGCATTCGAACTT-TATATCAACGGAATCATTTACGC--GTTTT---GCCCTAT-C-ACACTAGG--GTTTTCAAGC-GTAAGA-CGTCANA-AAT-GG-CAGAGAAATGACAGTCATT-TTAAAACGGCTCTGTAAATGAA-TA-TTTTCAATGTAACGGCAACCACGACATTG-TCG---GCGCACA-GAT--AAAT-TATCAAAAT-TTGT---GTAGATCGCTAAACC-A-C-GA-TTATTGATT-CAGATCAGACAAAACGGGAAGCTGGAA-C-G-ACATCA--GATCACAGGAATGTTAGCT-AAATATGACA--TTT-GA----AA-TATT-TATAAATCATCAGT-ACAATGCCAC-TGCGCATACATC-GCCG-AAATA-GATGTAGAACTCGNGGTTATC-GGACT-TCGACACCCCA-CCTTANTCCCTAGAC-TATA-T-TAGCACCGCTCGGATTTT-GCCTATTTTCTACTT-A-TGANC-G-AGGC-CAGCTTGAGGGGT--AAAC------------G-T-TTG----------CATTT----TGGAGGGA-GGAT-AATA-G-A-GGAGCAGTGAGGAA-ATT-TCAACGTG-TTTCTG-A-ATCAGGCG-TTGGTTT--GAATGT-GTGGTTCGACAAA---TGGCGTG--AAA--CGACAT-GAAAAATGCATCGCGC-ATCGGGGA--CAATGACT---TT-GAAAAAAAAA--CTCTNAT-AACGTCAT-GAC-TT-GTGCGCCGGACAGATAT-GAACATAGGTGNTTGATTTTTGTT-TTATGTTAATATTAAGAGAT-ACA-TTTGATGAAAA-T----TGTACAAAGT-AGTAAAC-AAATGTTNTGCTA---ATAAAT-AGCAAAAGGAAAATTTAAT-CAAC--TTTCTTA-CA-AATAAACGAA-TTATCAAACATTGCCCACGA-CTTTTTGGGA-CAACCCTCGTA-TAT
gi|1 : TAT-CGAGGT--GATTTGTCC-CA-AAAA---G--TCGTG--GACAA-GT--TCATTTAATTTCCAAACTACGA-C-AT-C------AG-TCCA--AAAAA-TA---------TGTGTTA-AT-AA---TAAC-T------TTA--ACTT-ACATTCAAA--CAAAA---GATTGT-AAA-TTTACAAACA---AAT---CATATTCAAATAAATG-AGA-A-ATTT-TCAG-ATCTAAGGA-GTGCTC--T-A-----------TGAT-CC--A-T--GTTG-G-GC-ACGTAC-AAATAC-AAA--GTGTACATATTCT-A-TG-ATTC-ATTTGGGT-TAGATGACTAAGGGATATAGCTTCATAAATATATATACTTTGCATTCGAATTTATATATCAACGGAATCATTTACGT--GTGTT---GCCCTAT-C-ACACTAGG--GTTTTCAAGCCGTAAGAGCGTCAAA-AATCGG-CAGAGAAATGACAGTCATC-TTAAAACGGCTCTGTAAATGAA-TA-TTTTCATTGTAACGGCAACCACGACATTG-TCG---GCGCACA-GA---AAACATATCAAAAT-TTGT---GTAGATCGCTAAACC-A-C-GA-TTATTG-TT-CAGATCAGACAAAACGGGAAGCTGGAA-C-G-ACA-CA--GATCACAGGAATGTTAGCT-AAATATGATAATTTT-GA----AA-TATT-CATAAATCATCAGT-TCAATGCCAC-TGCGCATACATTGGCTGCAAATA-GATGTAGAACTCGGGGTTATC-GGACT-TCGACACCCCA-CCTTAATCCCTAGAC-TACA-T-TAGCACCGCTCCGATTTT-GCCTATTTTCTACTT-A-TGATC-GCAGGC-CAGTTTGAGGGGT--AAAC------------A-T-TTG----------TATTT----TGAAGGGACGGAT-AATA-G-A-GGAGCAGTAAGGAACATT-TCAACCTG-TTTCTG-A-ATCA-GCGTTTGGTTG--GGATTT-GTGCTTCGACAAA---TGGCGTG--AAA--C-ACATGGAAAAATGGA---CAC-ATGGGGGA--CAATGACT---TTCGAAAAGGAAA--CGCTTAT-AACGTCATGGAC-TTGGTGCGCCGGACAG-TAT-GAACATAGGTGGTTGATTTTTGTT-TTATGTTAATTTTAAGAGAT-ACAGTTTTATGAAAT-G----TGTACAAAGTGAGTAAAC-AAATGTTCTGCTA---ATAAAT-AGCAAAAGGAAAATTTAAT-CAAC--TTTCTTA-CA-AATACACGAATTTATCAAACATTG-TCACGA-CTTTTTGGGA-CAACCTGCGTA-TAT
gi|10 : TTCT---GCC-TAT-C-ACACT-GG--GTTTTCAAGC-GTAAGA-CGTCAAA-AAT-GG-CAGAGAAATGAC-GTCATT-TTAAAACGGCTCTGT-AATGAA-TATTTTTCATTGTAACGGCAACCACGACATTG-TCG---GCGCACA-GAT--AAAT-TATCAAAAT-TTGT---GTAGATCG-TAAACC-ACC-GA-TT-TTGATTCCAGCTCAGACAAAACGGG-AGCTGtt
gi|11 : atgtt-CGAGC---G--TTGTCC-CA-AAAA---A--TCTTT--GGCAATGTTGTAA---AATTTCTAAAATACG--C-AT-C------
gi|11 : AA---TAAC-T------CTA--ACTT-GCAT-CAAA--CAAAT---T--TGT-AAACTTTGAAAG-A---AATTT-CATAA-CAAATAATTG-AAT-T-ATTaaacaaacaaacaacaacaaaaaaaaaacaaaccccaaccccccaaaagaccccccctcccccaaatttggcctgaataactctaacttgcatcaaacaaatttgtaaactttgaaagaaatttcataacaaataattgaattatt
gi|12 : cgagcgttgtcccaaaaaatctttggcaatgttgtaaaatttctaaaatacgcatcaaacaaacaaacaacaacaaaaaaaaaacaaaccccaaccccccaaaagaccccccctcccccaaatttggcctg-CGAGG---G--TTGTCC-CA-AAAA---G--T-----------TTT--AAAAT-AATTTCCAAA--ACAAGC-AT-C------AA--CCA--AAAAA-AAACG------TTTTTGGCATGAA---TAAC-T------CCA--ACTT-ATTT-CAAA--CAAAA---T--TGT-AAACTTT-AAAACA---AATAT-CATAA-CAAAC-AATG-A
gi|13 : aCAGACAAAAC-GGAAGATGGAA-C-GAATATCA--GATCACAGGAATAATAGCA-AAATAAGACA--TTG-AA----AA-TA-T-TATAatta
gi|14 : --TTTCATAACA-AATAATTGAA-TTATTCAACATTGCCCACAA-CTGTTTGGGA-CAACCCTCGTA-TA
gi|15 : TACAAAGT-AGTAA-C-AAATGTT--GCTA---ATAAAT-AGCAAAAG--AAATTTAAT-ggtat
gi|16 : TATCAA-CATTGCCCACGA-CTTTTTGGTA-CAACCCtca
gi|2 : TAT-CGAGGTCGA--TTGTCC-CATAAAA---GAATCGTGTCGACAA-GTA-TA--T-AATTTCCAACCTACGA-C-ATTC------AG-TCCATAAAAGAATA---------CTTTTTACAT-AA---TAAC-T------TTA--ACTT-ACATTCAAA--CAAAA---AGATGTTAAAATTTAACAACA---AATATGCATATTCAAATAAATG-AGA-AGATTT-TCAGTATCTAAGGAAGTGCTC--T-A-----------TGAT-CC--AAT--GTTGCGCGC-ACGTACCAAATAC-AAA--GT--ACATATTCT-AATGCATTC-ATT-GGGT-TAGATGACTAAGGGATATAGCTTCATAA-TATATATACTTTGCATT-GAACTT-TATATCAACGGAATT-CTTAC-C--GTTTTTCTGCCCTAT-CCACACT-GG--GTTTTCAAG--GTAAGAGCGACAAA-AAT-GGGCAGAGAAATGACAGTCATTCTTAAAACGGCTCTGTAA-TGA--TA-TTTTCA-TTTAACG-CAAC-ACGACATTGCTCG---G-GCACAAGATTAAAGA-TATCAAAAT-TTGTCTTGTAGATCGCTAAACCCA-CCGACTTATCG----CACATCAGACAAAACGGGA-GCTGGAA-CCG-ACATCA--GAT-ACAGGAAT-TTAGCT-AAAT-TGATA--TTTTGA----AACTATTATATGAATCATCAGT-ACAATGCCACCTGCGCATACATT-GCTG-AAATA-GATGT-GAACTCCGGGTTATCCGGACTGTCGACACCCCAGCCTTAATCCCTAGACCTACA-T-TAGCACCGCTCG-ATTTT-GCCTATTTTCTACT--A-TGATC-G-AGGC-CAGTTTGAGGGGT--AAAC------------AAT-TTG----------TATTT----TGAAGG-A-GGATGAATA-GCA-GCAGCAGTAAGGAA-ATTCTCAACCTGATTTCTGCATATCAG-CG-T-GCTTTTGGGATGTTGTGACTCGACAAAATACGGCGTG--AAAAACAACAT-GAAAAATG----ACAC-ATCGGGGGACCAATGACT---TT-GAAAAGAA----CGCTTAT-AACGTCAT-GAC-TT-GGTCGCCGGACAGATAT-GAACATAGGTGGTTGATTTTTGTT-TTATGTTAAT-TTAAGAGAT-ACA-TTT-ATG-AAA-T----TGTACAAAGT-AGTAAAC-AAATGTTCTGCTA---ATAAAT-AGCAAAA-GAAAATTTAAT-CAAC--TTTCTTA-CA-AATACACGAA-
gi|3 : gcataTATACGAGG---G--TTCTCC----AAAA---G--TCGTG--GACAATGT--TAAT--AATT-CCAAACTAC-A-C-A---------GA-TCCA--AAAGA-TA----------TTTTTACATTAA---TAACTT------TTA--ACTT-ACAT-CAAA--CAAAA---G--TGT-AAAATTTAAAAACA---AATAT-CAT----AAATAAATG-AGC-T-A-TT-TCAG-AT---AAGA-GTGCTC--TAA-----------TGAG-CC--G-T--GTTG-GCGC-ACGTAC-AAAT----AA--GTGTACATTTTCT-A-TG-ATCC-ATT-GGTT-TAAATGA--AAGGATTATAGCTTAATAA-TATATA-----TGCATT-GAACTT-TAT-TCAACGAAG--A-TTATAT--GTTTT---GTCTAAT-T-ATACT-GG--ATTTTCAAGC-GCAAGA-CGTCATA-AAT-GG-CAGAGAAATGAC-GTCATT-TTAAAACGGATCTG--AATAA---G-TTTTCAATGTAACGGCAACCACG-CGTCG-TCG---GCGCACA-GAT---AAT-TA-CAAAGTGTTGT---GTAGAT-------CC-G-T-GG-TTG--GATT-C--ATTAGACAAAACGGG-CGCT-GAA-C-G-ACATCAAGAATCACAAGAAT-TTA-CTAAAATATGACA--TTG-AA----AA-------ATAAATCATCAGTAACAATGCC-C-TGCACGTACA-C-GT---GAATACGATGT-GAACTCGTGG-TATC--GACT-TCGACA-CCCA-CCTTATTCCCTACCT-TATA---TAGCACGCCTCGGATTTG-GCCTATTTTCTAATT-ACNNNNN-N-NNNN-NNNNNNNNNNNNN--NNACTTAAGAAGGCCAG-C-TTGAGGGGGCAAACATTTGATTTGGAAGGA--GAT-AATA-G-A-GGAGCAGTGAGG-A-ATT-TCAACGTG-TTTCTG-A-ATCAGGCG--TGGTTT--GAAGAT-GT-GTTTGACAAA---TGG-GTG--AAA--CTAC-----AAAACGCATCGCGC-AGCGGGGA--CAAT-ACTAAAAT-G-AAAAAGAA--CTCTAAT-AACGTCAT-GAC-TT-GTGCGCC-AACAGATAT-GAACATAGGTGTTTGATTTTTGTT-TTATGTTAATATTAAGAGAT-ACATTTTGATGAAAATT----TGTACAGAGT-AGT--ACTAAATG--ATGCTAATTATAAAT-AGCAAAAG--AAATTTAATACAAT--TTTCTTA-CA-AATAAACGA
gi|4 : caA---G--TCGTG--GACAATGT--TAAT--AATTTCCAAACTACG--C-AT-C------AGATCCA--AAA-A-TA---------TTTTTTACATTAA---TAAC-T------TTA--GCTT-ACAT-CAAA--CAAAA---G--TGT-AAAATCTAAAA-CA---AATAT-CATAA-CAAATAAATG-AGC-G-ATTT-AC----TCTA---------TC--T----------------G-CC--A-T--GTTG-GAGC-ACGCAC-AAATG--TCA--TTAAACATTTTCT-A-TA-ATCC-ACT-GGGA-TAGATGA--AAGA-ATATAGCTTCATGA-TAGATAT--TTTGCATTCAAA-TT-CATATCAACGGAATC-TGTG-GT--GTTTTCT-GCCTAAT---ACAC-AAG--GTTTTTAAGC-GTATGA-CGTCATA-AAT-GG-TAGAG-----ACA---------------------TAAAT--A-GA-TTT--AATGTAACGGTAACCAAGACATTG-TCA---GCGCACA-GAT--AAAT-TATCAAATT-TTGT---GTAGATCG----------T-GG-TT-TTACTC-CAACTCAGACAAAACGGG-AGATGGAAGG-G-ACATCA--GATCACAGAAATGTTAGCA-TACCATGACA---TT-GAACATAA-TATT-T----ATCATCATT-ACAATGCCCT-TGCGCACACATCGGCCA-AAATA-GATCTAGAACTCATGGTCATC-GGACT-TTGACA-CCCA-CCTTGCTCCCTAGAC--ATATT-TAGCACGGCTCAATTTTT-GCCTATTTTCTACTT-T-TGAAC-----GC-CAGCTTAAGGGGC--AAAC------------G-T-TTG-----------A-TT----TGGATGGA--GAT-ATTT-T-A-GGAGCAGTG-GGGA-ATT-TCAACGTG-TCTCTG-A-ATCAGGCG--TGGTTT--GAATGT-GT-GTTTGACTAA---TGG-GCG--AAA--CGGCAT-GGAAAATGCATCGCGC-TTCGGGGA--CAAT-ACT---T----AAAAAAAACCCTCTGAT-AACGTCAT-GAT-TT-
gi|5 : C-CATA-TATAGCACCGCTCG-ATTTTAGCCTATTTCATACTTCA-TGAAAAG-TGGCGCAGCTTGAGCGGTGCAAAC------------A-TATTG----------CATTT---------GGA-GAAT-AATTTG-ATGGAGCAGTT--GAA-ATT-T-AACGTG-TCTCCT-A-A-CACG-G-TGGGTTT--GAAGGC--TGGTTTGACAAA---TGAGGTGGAAAA--CGACAT-GAAAAATGCATCGCGCAATCGGGGA--AAAT-AC----TT-GAAAAAAAAA--CTCTGATAAACGTCAT-GACTTT-GTGCGCC-GACAGATATAGGACATA-GTCTTTAA-TTTTGTTATTCTGTTAATATTAAGAGATAACA-TTTGATGAAAA-TTCAGTGTACAAATT-AGTAAAC-AAATG--ATGC-A---AAAAATCAG-AAAAGGAAAG-TTAAT---ACTATTTCTTA-CAGAATAAATGAA-TTATCAACCA-TGTCCACGAGCTTTTTGGGAGCAACCCTCGTAGTAT
gi|6 : -CGAGG---G--TTGTCC-CA-AAAA---G--TCGTG--GACAATGT--TAAT--AATTTCCAAACTAC-A-C-A---------GA-TCCA--AAAGA-TA---------TTTT-TACATTAA---TAAC-T------TTA--ACTT-ACAT-CAAA--CAAAA---G--TGT-AAAATTTAAAAACA---AATAT-CATAT--AAATAAATG-AGC-T-A-TT-TCAG-AT---AAGA-GTGCTC--TAA-----------TGAG-CC--G-T--GTTG-GCGC-ACGTAC-AA--A--AAA--GTGTACATTTT-T-A-TG-ATCCAATT-GGTT-TAAATGA--AA-GGATATAGCTTAATAA-TATATATA--TTGCATT-GAACTT-TATATCg
gi|7 : -CGAGG---G--T-GTCCACA-AAAAAAAG--TCGTG--GACCATGTG-TAAT--AATTTTC---CTAAGA-TGAT-CTGCTCAGA-TCCT--AATGA-TACTTACTTTATTTCTCACATTAGATTTAAT-TCACACATTAGAACTTGACAGGCAAATGCAAAATAAG--TGT-AAATTTTTAAAGCAGGTAATATGCATAT-GAATTAAATGAAGCAT-ATTTATCAG-AT-TAAG---GTGGTC--T-ACTCATCAGAATTGAGACCAAA-TAAGTTGCGCGCGACGTAC-AGATACTAGG--GTGAACATTTTtggttattctctgctacaatgttttc
gi|8 : ta--GTTG-GCGC-AC-TAC-AAATA--AGGTCGTGAACATTTTCTGA-TGGATCC-ATT-GGGGGTA-ATGA--AAG--ATTTAACTTCATAA-TAAA---A-TC-GCATTCAAA--T-TATATCAACGGA--CATCTATGCATGTTTT----CTGTATGT-ATACGAGGTCGTTT-CAAGC-GTAAGA-CGTCATGTAAT-G--CAGGGAA-TGAC--TCATT-TTAAA-CGTCTCTGTAA-TGAAGTT-TTCTCAATG-AACG-CAACCACGACCTTG-TTGTACGCGCACA-GAT--AAAT-TATC--AAT-TTGT---GTAGATgccgatatattgattactaaat
gi|9 : cT-AATTTCCAAACTACG--C-AT-C------AGATCCA--AAAGA-T----------TTTTTTACATTAA---TAAC-T------TTA--ACTT-ACAT-CAAA--CAAAA---G--TGT-AAAATTTAAAA-CA---AATAT-CATAT-CAAATACATG-AGA-A-ATTT--CAG-AT-TAAGGA-GTGCTCAGT-A-----------TGAG-CC--A-T--GTTG-GCGC-ACGTAC-AA-----------------TTTTCT-A-TG-ATTC-ATC-GGGT-TAGATGA--AA-GGATATAGCTTCATAA-tcgtgt
Alignments
lowQualScore : 111111 22222222 222222222222222222 222222222 111111 1 111111 111 1111 1 3333333333333 1111 1 2222222222 1 11 2222 1 2222222222222 222 111 11 1 11 11111 111 111 2222222222222222222222222 11 1 11 1 11 11 22222222222 1 111 22222222 1 1 11 1 1 1 11 111 1 1111 2222 11 666666666666666666666666666666 11111 11 1111 11 222 11 1 111 1 11 11 11 222222222222 11 1 1 1 1 2 222222 222 111 11 11 11 1 1 1 1
lowQualScore : 5 555555 5 5 888 66 66 3 55555555 444444444444444444 66 0 5 888888888 6 777 4 222222 66 4 3 66 777777 4 4 1 5 777 8 222 4 2222 3 77 5 8 0 5 77 6666666666666 5 5555 66 0 5 5 9999999999 55 5 5 1 5 5 5 1 55 666 5 2222 5 9 6 6666666666666 000 7 777 88 99 6 3 1 6 6 6 3 88 6 3 3 7 1 77777 7 6 6 111 6 99 6 6 111 8888888888888888888888888 444 88 8 6 0 11 3 99 0 11 88 22222222222 3 0 333 00000000 0 5 11 3 22 0 5 0 1 11 666 3 8 3333 1 1111 8 11 444444444444444444444444444444 0 77777 1 3 88 8 2222 8 22 3 8 8 8 8 8 0 5 444 11 0 8 0 444 5 11 11 8 0 8 666 8 11 111111111111 0 11 0 1 8 8 8 8 5 3 0 2 1 3 0 9 0 0 8 3 888888 8 0 0 8 000 0 444 8 00 0 00 11 8 8 0 0 9 3 6 0 0 3
lowQualScore : . ...... . . ... .. .. . ........ .................. .. . . ......... . ... . ...... .. . . .. ...... . . . . ... . ... . .... . .. . . . . .. ............. . .... .. . . . .......... .. . . . . . . . .. ... . .... . . . ............. ... . ... .. .. . . . . . . . .. . . . . . ..... . . . ... . .. . . ... ......................... ... .. . . . .. . .. . .. .. ........... . . ... ........ . . .. . .. . . . . .. ... . . .... . .... . .. .............................. . ..... . . .. . .... . .. . . . . . . . . ... .. . . . ... . .. .. . . . ... . .. ............ . .. . . . . . . . . . . . . . . . . . . ...... . . . . ... . ... . .. . .. .. . . . . . . . . . .
lowQualScore : 7 999999 7 7 888 99 99 2 55555555 666666666666666666 99 2 0 888888888 2 888 4 888888 11 4 3 11 333333 4 7 0 2 888 9 333 4 4444 2 44 7 6 7 7 99 6666666666666 7 0000 99 0 0 0 2222222222 99 7 7 4 7 7 7 7 77 777 7 8888 0 3 7 0000000000000 888 8 000 77 22 7 3 0 7 7 7 2 00 7 2 2 3 0 55555 8 7 7 777 7 22 7 7 777 0000000000000000000000000 666 77 0 0 8 00 2 44 8 00 44 00000000000 8 0 222 88888888 0 5 22 2 55 0 0 0 0 88 888 2 0 0000 0 2222 0 00 000000000000000000000000000000 8 88888 4 2 00 0 4444 0 00 8 0 0 0 0 0 8 0 222 00 6 0 0 000 0 00 00 2 8 0 444 0 00 444444444444 8 00 6 0 0 0 0 0 0 2 0 5 0 2 0 8 0 0 8 2 222222 0 8 8 0 000 8 000 0 66 8 55 00 0 0 6 0 2 2 5 0 0 3
consensus : TAT-CGAGG---G--TTGTCC-CA-AAAA---G--TCGTG--GACAATGT--TAATT-AATTTCCAAACTACGA-C-AT-C------GG-TCCA--AAAGA-TA---------TTTTTTACATTAA---TAAC-T------TTA--ACTT-ACAT-CAAA--CAAAA---G--TGT-AAAATTTAAAAACA---AATAT-CATAT-CAAATAAATG-AGC-N-ATTT-TCAG-ATCTAAGGA-GTGCTC--T-A-----------TGAG-CC--G-T--GTTG-GCGC-ACGTAC-AAATA-C-AAA--GTGNACATTTTCT-A-TG-ATCC-ATT-GGGT-TAGATGA--AAGGGATATAGCTTCATAA-TATATATA-TTTGCATTCGAACTT-TATATCAACGGAATCATTTACGC--GTTTT---GCCCTAT-C-ACACTAGG--GTTTTCAAGC-GTAAGA-CGTCANA-AAT-GG-CAGAGAAATGACAGTCATT-TTAAAACGGCTCTGTAAATGAA-TA-TTTTCAATGTAACGGCAACCACGACATTG-TCG---GCGCACA-GAT--AAAT-TATCAAAAT-TTGT---GTAGATCGCTAAACC-A-C-GA-TTATTGATT-CAGATCAGACAAAACGGGAAGCTGGAAC-G-ACATCA--GATCACAGGAATGTTAGCT-AAATATGACA--TTN-GAA----A-TATT-TATAAATCATCAGT-ACAATGCCAC-TGCGCATACATCGGCCGCAAATA-GATGTAGAACTCGNGGTTATC-GGACT-TCGACACCCCA-CCTTANTCCCTAGAC-TATA-T-TAGCACCGCTCGGATTTT-GCCTATTTTCTACTT-A-TGANC-G-AGGC-CAGCTTGAGGGGT--AAAC------------G-T-TTG----------CATTT----TGGAGGGA-GGAT-AATA-G-A-GGAGCAGTGAGGAA-ATT-TCAACGTG-TTTCTG-A-ATCAGGCG-TTGGTTT--GAATGT-GTGGTTCGACAAA---TGGCGTG--AAA--CGACAT-GAAAAATGCATCGCGC-ATCGGGGA--CAATGACT---TT-GAAAAAAAAA--CTCTNAT-AACGTCAT-GAC-TT-GTGCGCCGGACAGATAT-GAACATAGGTGNTTGATTTTTGTT-TTATGTTAATATTAAGAGAT-ACA-TTTGATGAAAA-T----TGTACAAAGT-AGTAAAC-AAATGTTNTGCTA---ATAAAT-AGCAAAAGGAAAATTTAAT-CAAC--TTTCTTA-CA-AATAAACGAA-TTATCAAACATTGCCCACGA-CTTTTTGGGA-CAACCCTCGTA-TAT
Reference ( family-302 ) : TAT-CGAGG---G--TTGTCC-CA-AAAA---G--TCGTG--GACAATGT--TAATT-AATTTCCAAACTACGA-C-AT-C------GG-TCCA--AAAGA-TA---------TTTTTTACATTAA---TAAC-T------TTA--ACTT-ACAT-CAAA--CAAAA---G--TGT-AAAATTTAAAAACA---AATAT-CATAT-CAAATAAATG-AGC-N-ATTT-TCAG-ATCTAAGGA-GTGCTC--T-A-----------TGAG-CC--G-T--GTTG-GCGC-ACGTAC-AAATA-C-AAA--GTGNACATTTTCT-A-TG-ATCC-ATT-GGGT-TAGATGA--AAGGGATATAGCTTCATAA-TATATATA-TTTGCATTCGAACTT-TATATCAACGGAATCATTTACGC--GTTTT---GCCCTAT-C-ACACTAGG--GTTTTCAAGC-GTAAGA-CGTCANA-AAT-GG-CAGAGAAATGACAGTCATT-TTAAAACGGCTCTGTAAATGAA-TA-TTTTCAATGTAACGGCAACCACGACATTG-TCG---GCGCACA-GAT--AAAT-TATCAAAAT-TTGT---GTAGATCGCTAAACC-A-C-GA-TTATTGATT-CAGATCAGACAAAACGGGAAGCTGGAAC-G-ACATCA--GATCACAGGAATGTTAGCT-AAATATGACA--TTT-GAA----A-TATT-TATAAATCATCAGT-ACAATGCCAC-TGCGCATACATCGGCCG-AAATA-GATGTAGAACTCGNGGTTATC-GGACT-TCGACACCCCA-CCTTANTCCCTAGAC-TATA-T-TAGCACCGCTCGGATTTT-GCCTATTTTCTACTT-A-TGANC-G-AGGC-CAGCTTGAGGGGT--AAAC------------G-T-TTG----------CATTT----TGGAGGGA-GGAT-AATA-G-A-GGAGCAGTGAGGAA-ATT-TCAACGTG-TTTCTG-A-ATCAGGCG-TTGGTTT--GAATGT-GTGGTTCGACAAA---TGGCGTG--AAA--CGACAT-GAAAAATGCATCGCGC-ATCGGGGA--CAATGACT---TT-GAAAAAAAAA--CTCTNAT-AACGTCAT-GAC-TT-GTGCGCCGGACAGATAT-GAACATAGGTGNTTGATTTTTGTT-TTATGTTAATATTAAGAGAT-ACA-TTTGATGAAAA-T----TGTACAAAGT-AGTAAAC-AAATGTTNTGCTA---ATAAAT-AGCAAAAGGAAAATTTAAT-CAAC--TTTCTTA-CA-AATAAACGAA-TTATCAAACATTGCCCACGA-CTTTTTGGGA-CAACCCTCGTA-TAT
gi|1 : TAT-CGAGGT--GATTTGTCC-CA-AAAA---G--TCGTG--GACAA-GT--TCATTTAATTTCCAAACTACGA-C-AT-C------AG-TCCA--AAAAA-TA---------TGTGTTA-AT-AA---TAAC-T------TTA--ACTT-ACATTCAAA--CAAAA---GATTGT-AAA-TTTACAAACA---AAT---CATATTCAAATAAATG-AGA-A-ATTT-TCAG-ATCTAAGGA-GTGCTC--T-A-----------TGAT-CC--A-T--GTTG-G-GC-ACGTAC-AAATA-C-AAA--GTGTACATATTCT-A-TG-ATTC-ATTTGGGT-TAGATGACTAAGGGATATAGCTTCATAAATATATATACTTTGCATTCGAATTTATATATCAACGGAATCATTTACGT--GTGTT---GCCCTAT-C-ACACTAGG--GTTTTCAAGCCGTAAGAGCGTCAAA-AATCGG-CAGAGAAATGACAGTCATC-TTAAAACGGCTCTGTAAATGAA-TA-TTTTCATTGTAACGGCAACCACGACATTG-TCG---GCGCACA-GA---AAACATATCAAAAT-TTGT---GTAGATCGCTAAACC-A-C-GA-TTATTG-TT-CAGATCAGACAAAACGGGAAGCTGGAAC-G-ACA-CA--GATCACAGGAATGTTAGCT-AAATATGATAATTTT-GAA----A-TATT-CATAAATCATCAGT-TCAATGCCAC-TGCGCATACATTGGCTGCAAATA-GATGTAGAACTCGGGGTTATC-GGACT-TCGACACCCCA-CCTTAATCCCTAGAC-TACA-T-TAGCACCGCTCCGATTTT-GCCTATTTTCTACTT-A-TGATC-GCAGGC-CAGTTTGAGGGGT--AAAC------------A-T-TTG----------TATTT----TGAAGGGACGGAT-AATA-G-A-GGAGCAGTAAGGAACATT-TCAACCTG-TTTCTG-A-ATCA-GCGTTTGGTTG--GGATTT-GTGCTTCGACAAA---TGGCGTG--AAA--C-ACATGGAAAAATGGA---CAC-ATGGGGGA--CAATGACT---TTCGAAAAGGAAA--CGCTTAT-AACGTCATGGAC-TTGGTGCGCCGGACAG-TAT-GAACATAGGTGGTTGATTTTTGTT-TTATGTTAATTTTAAGAGAT-ACAGTTTTATGAAAT-G----TGTACAAAGTGAGTAAAC-AAATGTTCTGCTA---ATAAAT-AGCAAAAGGAAAATTTAAT-CAAC--TTTCTTA-CA-AATACACGAATTTATCAAACATTG-TCACGA-CTTTTTGGGA-CAACCTGCGTA-TAT
gi|10 : TTCT---GCC-TAT-C-ACACT-GG--GTTTTCAAGC-GTAAGA-CGTCAAA-AAT-GG-CAGAGAAATGAC-GTCATT-TTAAAACGGCTCTGT-AATGAA-TATTTTTCATTGTAACGGCAACCACGACATTG-TCG---GCGCACA-GAT--AAAT-TATCAAAAT-TTGT---GTAGATCG-TAAACC-ACC-GA-TT-TTGATTCCAGCTCAGACAAAACGGG-AGCTGtt
gi|11 : atgtt-CGAGC---G--TTGTCC-CA-AAAA---A--TCTTT--GGCAATGTTGTAA---AATTTCTAAAATACG--C-AT-C------
gi|11 : AA---TAAC-T------CTA--ACTT-GCAT-CAAA--CAAAT---T--TGT-AAACTTTGAAAG-A---AATTT-CATAA-CAAATAATTG-AAT-T-ATTaaacaaacaaacaacaacaaaaaaaaaacaaaccccaaccccccaaaagaccccccctcccccaaatttggcctgaataactctaacttgcatcaaacaaatttgtaaactttgaaagaaatttcataacaaataattgaattatt
gi|12 : cgagcgttgtcccaaaaaatctttggcaatgttgtaaaatttctaaaatacgcatcaaacaaacaaacaacaacaaaaaaaaaacaaaccccaaccccccaaaagaccccccctcccccaaatttggcctg-CGAGG---G--TTGTCC-CA-AAAA---G--T-----------TTT--AAAAT-AATTTCCAAA--ACAAGC-AT-C------AA--CCA--AAAAA-AAACG------TTTTTGGCATGAA---TAAC-T------CCA--ACTT-ATTT-CAAA--CAAAA---T--TGT-AAACTTT-AAAACA---AATAT-CATAA-CAAAC-AATG-A
gi|13 : aCAGACAAAAC-GGAAGATGGAAC-GAATATCA--GATCACAGGAATAATAGCA-AAATAAGACA--TTG-AAA----A-TA-T-TATAatta
gi|14 : --TTTCATAACA-AATAATTGAA-TTATTCAACATTGCCCACAA-CTGTTTGGGA-CAACCCTCGTA-TA
gi|15 : TACAAAGT-AGTAA-C-AAATGTT--GCTA---ATAAAT-AGCAAAAG--AAATTTAAT-ggtat
gi|16 : TATCAA-CATTGCCCACGA-CTTTTTGGTA-CAACCCtca
gi|2 : TAT-CGAGGTCGA--TTGTCC-CATAAAA---GAATCGTGTCGACAA-GTA-TA--T-AATTTCCAACCTACGA-C-ATTC------AG-TCCATAAAAGAATA---------CTTTTTACAT-AA---TAAC-T------TTA--ACTT-ACATTCAAA--CAAAA---AGATGTTAAAATTTAACAACA---AATATGCATATTCAAATAAATG-AGA-AGATTT-TCAGTATCTAAGGAAGTGCTC--T-A-----------TGAT-CC--AAT--GTTGCGCGC-ACGTACCAAATA-C-AAA--GT--ACATATTCT-AATGCATTC-ATT-GGGT-TAGATGACTAAGGGATATAGCTTCATAA-TATATATACTTTGCATT-GAACTT-TATATCAACGGAATT-CTTAC-C--GTTTTTCTGCCCTAT-CCACACT-GG--GTTTTCAAG--GTAAGAGCGACAAA-AAT-GGGCAGAGAAATGACAGTCATTCTTAAAACGGCTCTGTAA-TGA--TA-TTTTCA-TTTAACG-CAAC-ACGACATTGCTCG---G-GCACAAGATTAAAGA-TATCAAAAT-TTGTCTTGTAGATCGCTAAACCCA-CCGACTTATCG----CACATCAGACAAAACGGGA-GCTGGAACCG-ACATCA--GAT-ACAGGAAT-TTAGCT-AAAT-TGATA--TTTTGAA----ACTATTATATGAATCATCAGT-ACAATGCCACCTGCGCATACATTG-CTG-AAATA-GATGT-GAACTCCGGGTTATCCGGACTGTCGACACCCCAGCCTTAATCCCTAGACCTACA-T-TAGCACCGCTCG-ATTTT-GCCTATTTTCTACT--A-TGATC-G-AGGC-CAGTTTGAGGGGT--AAAC------------AAT-TTG----------TATTT----TGAAGG-A-GGATGAATA-GCA-GCAGCAGTAAGGAA-ATTCTCAACCTGATTTCTGCATATCAG-CG-T-GCTTTTGGGATGTTGTGACTCGACAAAATACGGCGTG--AAAAACAACAT-GAAAAATG----ACAC-ATCGGGGGACCAATGACT---TT-GAAAAGAA----CGCTTAT-AACGTCAT-GAC-TT-GGTCGCCGGACAGATAT-GAACATAGGTGGTTGATTTTTGTT-TTATGTTAAT-TTAAGAGAT-ACA-TTT-ATG-AAA-T----TGTACAAAGT-AGTAAAC-AAATGTTCTGCTA---ATAAAT-AGCAAAA-GAAAATTTAAT-CAAC--TTTCTTA-CA-AATACACGAA-
gi|3 : gcataTATACGAGG---G--TTCTCC----AAAA---G--TCGTG--GACAATGT--TAAT--AATT-CCAAACTAC-A-C-A---------GA-TCCA--AAAGA-TA----------TTTTTACATTAA---TAACTT------TTA--ACTT-ACAT-CAAA--CAAAA---G--TGT-AAAATTTAAAAACA---AATAT-CAT----AAATAAATG-AGC-T-A-TT-TCAG-AT---AAGA-GTGCTC--TAA-----------TGAG-CC--G-T--GTTG-GCGC-ACGTAC-AAAT-----AA--GTGTACATTTTCT-A-TG-ATCC-ATT-GGTT-TAAATGA--AAGGATTATAGCTTAATAA-TATATA-----TGCATT-GAACTT-TAT-TCAACGAAG--A-TTATAT--GTTTT---GTCTAAT-T-ATACT-GG--ATTTTCAAGC-GCAAGA-CGTCATA-AAT-GG-CAGAGAAATGAC-GTCATT-TTAAAACGGATCTG--AATAA---G-TTTTCAATGTAACGGCAACCACG-CGTCG-TCG---GCGCACA-GAT---AAT-TA-CAAAGTGTTGT---GTAGAT-------CC-G-T-GG-TTG--GATT-C--ATTAGACAAAACGGG-CGCT-GAAC-G-ACATCAAGAATCACAAGAAT-TTA-CTAAAATATGACA--TTG-AAA----A-------ATAAATCATCAGTAACAATGCC-C-TGCACGTACA-----CGTGAATACGATGT-GAACTCGTGG-TATC--GACT-TCGACA-CCCA-CCTTATTCCCTACCT-TATA---TAGCACGCCTCGGATTTG-GCCTATTTTCTAATT-ACNNNNN-N-NNNN-NNNNNNNNNNNNN--NNACTTAAGAAGGCCAG-C-TTGAGGGGGCAAACATTTGATTTGGAAGGA--GAT-AATA-G-A-GGAGCAGTGAGG-A-ATT-TCAACGTG-TTTCTG-A-ATCAGGCG--TGGTTT--GAAGAT-GT-GTTTGACAAA---TGG-GTG--AAA--CTAC-----AAAACGCATCGCGC-AGCGGGGA--CAAT-ACTAAAAT-G-AAAAAGAA--CTCTAAT-AACGTCAT-GAC-TT-GTGCGCC-AACAGATAT-GAACATAGGTGTTTGATTTTTGTT-TTATGTTAATATTAAGAGAT-ACATTTTGATGAAAATT----TGTACAGAGT-AGT--ACTAAATG--ATGCTAATTATAAAT-AGCAAAAG--AAATTTAATACAAT--TTTCTTA-CA-AATAAACGA
gi|4 : caA---G--TCGTG--GACAATGT--TAAT--AATTTCCAAACTACG--C-AT-C------AGATCCA--AAA-A-TA---------TTTTTTACATTAA---TAAC-T------TTA--GCTT-ACAT-CAAA--CAAAA---G--TGT-AAAATCTAAAA-CA---AATAT-CATAA-CAAATAAATG-AGC-G-ATTT-AC----TCTA---------TC--T----------------G-CC--A-T--GTTG-GAGC-ACGCAC-AAATGTC-A----TTAAACATTTTCT-A-TA-ATCC-ACT-GGGA-TAGATGA--AAGA-ATATAGCTTCATGA-TAGATAT--TTTGCATTCAAA-TT-CATATCAACGGAATC-TGTG-GT--GTTTTCT-GCCTAAT---ACAC-AAG--GTTTTTAAGC-GTATGA-CGTCATA-AAT-GG-TAGAG-----ACA---------------------TAAAT--A-GA-TTT--AATGTAACGGTAACCAAGACATTG-TCA---GCGCACA-GAT--AAAT-TATCAAATT-TTGT---GTAGATCGT-----------GG-TT-TTACTC-CAACTCAGACAAAACGGGA-GATGGAAG-GGACATCA--GATCACAGAAATGTTAGCA-TACCATGACA--TT--GAACATAA-TATT-TAT----CATCATT-ACAATGCCCT-TGCGCACACATCGGCCA-AAATA-GATCTAGAACTCATGGTCATC-GGACT-TTGACA-CCCA-CCTTGCTCCCTAGAC--ATATT-TAGCACGGCTCAATTTTT-GCCTATTTTCTACTT-T-TGAAC-----GC-CAGCTTAAGGGGC--AAAC------------G-T-TTG-----------A-TT----TGGATGGA--GAT-ATTT-T-A-GGAGCAGTG-GGGA-ATT-TCAACGTG-TCTCTG-A-ATCAGGCG--TGGTTT--GAATGT-GT-GTTTGACTAA---TGG-GCG--AAA--CGGCAT-GGAAAATGCATCGCGC-TTCGGGGA--CAAT-ACT---T----AAAAAAAACCCTCTGAT-AACGTCAT-GAT-TT-
gi|5 : C-CATA-TATAGCACCGCTCG-ATTTTAGCCTATTTCATACTTCA-TGAAAAG-TGGCGCAGCTTGAGCGGTGCAAAC------------A-TATTG----------CATTT---------GGA-GAAT-AATTTG-ATGGAGCAGTT--GAA-ATT-T-AACGTG-TCTCCT-A-A-CACG-G-TGGGTTT--GAAGGC--TGGTTTGACAAA---TGAGGTGGAAAA--CGACAT-GAAAAATGCATCGCGCAATCGGGGA--AAAT-AC----TT-GAAAAAAAAA--CTCTGATAAACGTCAT-GACTTT-GTGCGCC-GACAGATATAGGACATA-GTCTTTAA-TTTTGTTATTCTGTTAATATTAAGAGATAACA-TTTGATGAAAA-TTCAGTGTACAAATT-AGTAAAC-AAATG--ATGC-A---AAAAATCAG-AAAAGGAAAG-TTAAT---ACTATTTCTTA-CAGAATAAATGAA-TTATCAACCA-TGTCCACGAGCTTTTTGGGAGCAACCCTCGTAGTAT
gi|6 : -CGAGG---G--TTGTCC-CA-AAAA---G--TCGTG--GACAATGT--TAAT--AATTTCCAAACTAC-A-C-A---------GA-TCCA--AAAGA-TA---------TTTT-TACATTAA---TAAC-T------TTA--ACTT-ACAT-CAAA--CAAAA---G--TGT-AAAATTTAAAAACA---AATAT-CATAT--AAATAAATG-AGC-T-A-TT-TCAG-AT---AAGA-GTGCTC--TAA-----------TGAG-CC--G-T--GTTG-GCGC-ACGTAC-AAA-----AAA--GTGTACATTTT-T-A-TG-ATCCAATT-GGTT-TAAATGA--AA-GGATATAGCTTAATAA-TATATATA--TTGCATT-GAACTT-TATATCg
gi|7 : -CGAGG---G--T-GTCCACA-AAAAAAAG--TCGTG--GACCATGTG-TAAT--AATTTTC---CTAAGA-TGAT-CTGCTCAGA-TCCT--AATGA-TACTTACTTTATTTCTCACATTAGATTTAAT-TCACACATTAGAACTTGACAGGCAAATGCAAAATAAG--TGT-AAATTTTTAAAGCAGGTAATATGCATAT-GAATTAAATGAAGCAT-ATTTATCAG-AT-TAAG---GTGGTC--T-ACTCATCAGAATTGAGACCAAA-TAAGTTGCGCGCGACGTAC-AGATA-CTAGG--GTGAACATTTTtggttattctctgctacaatgttttc
gi|8 : ta--GTTG-GCGC-AC-TAC-AAATA---AGGTCGTGAACATTTTCTGA-TGGATCC-ATT-GGGGGTA-ATGA--AAG--ATTTAACTTCATAA-TAAA---A-TC-GCATTCAAA--T-TATATCAACGGA--CATCTATGCATGTTTT----CTGTATGT-ATACGAGGTCGTTT-CAAGC-GTAAGA-CGTCATGTAAT-G--CAGGGAA-TGAC--TCATT-TTAAA-CGTCTCTGTAA-TGAAGTT-TTCTCAATG-AACG-CAACCACGACCTTG-TTGTACGCGCACA-GAT--AAAT-TATC--AAT-TTGT---GTAGATgccgatatattgattactaaat
gi|9 : cT-AATTTCCAAACTACG--C-AT-C------AGATCCA--AAAGA-T----------TTTTTTACATTAA---TAAC-T------TTA--ACTT-ACAT-CAAA--CAAAA---G--TGT-AAAATTTAAAA-CA---AATAT-CATAT-CAAATACATG-AGA-A-ATTT--CAG-AT-TAAGGA-GTGCTCAGT-A-----------TGAG-CC--A-T--GTTG-GCGC-ACGTAC-AA------------------TTTTCT-A-TG-ATTC-ATC-GGGT-TAGATGA--AA-GGATATAGCTTCATAA-tcgtgt
Alignments
lowQualScore : 111111 22222222 222222222222222222 222222222 111111 1 111111 111 1111 1 3333333333333 1111 1 2222222222 1 11 2222 1 2222222222222 222 111 11 1 11 11111 111 111 2222222222222222222222222 11 111 11 1 11 111 111111 1 111 11111111 1 1 11 1 1 1 11 111 1 1111 2222 11 666666666666666666666666666666 11111 11 1111 11 222 11 1 111 1 11 11 11 222222222222 11 1 1 1 1 2 222222 222 111 11 11 11 1 1 1 1
lowQualScore : 5 555555 5 5 888 66 66 3 55555555 444444444444444444 66 0 5 888888888 6 777 4 222222 66 4 3 66 777777 4 4 1 5 777 8 222 4 2222 3 77 5 8 0 5 77 6666666666666 5 5555 66 0 5 5 9999999999 55 5 5 1 5 5 5 1 55 666 5 2222 5 9 6 6666666666666 000 7 777 88 99 6 3 1 6 6 6 3 88 6 3 3 7 1 77777 7 6 6 111 6 99 6 6 111 8888888888888888888888888 444 88 111 8 0 11 3 99 0 11 99 444 444444 0 0 333 99999999 0 5 11 3 22 0 5 0 1 11 666 3 8 3333 1 1111 8 11 444444444444444444444444444444 0 77777 1 3 88 8 2222 8 22 3 8 8 8 8 8 0 5 444 11 0 8 0 444 5 11 11 8 0 8 666 8 11 111111111111 0 11 0 1 8 8 8 8 5 3 0 2 1 3 0 9 0 0 8 3 888888 8 0 0 8 000 0 444 8 00 0 00 11 8 8 0 0 9 3 6 0 0 3
lowQualScore : . ...... . . ... .. .. . ........ .................. .. . . ......... . ... . ...... .. . . .. ...... . . . . ... . ... . .... . .. . . . . .. ............. . .... .. . . . .......... .. . . . . . . . .. ... . .... . . . ............. ... . ... .. .. . . . . . . . .. . . . . . ..... . . . ... . .. . . ... ......................... ... .. ... . . .. . .. . .. .. ... ...... . . ... ........ . . .. . .. . . . . .. ... . . .... . .... . .. .............................. . ..... . . .. . .... . .. . . . . . . . . ... .. . . . ... . .. .. . . . ... . .. ............ . .. . . . . . . . . . . . . . . . . . . ...... . . . . ... . ... . .. . .. .. . . . . . . . . . .
lowQualScore : 7 999999 7 7 888 99 99 2 55555555 666666666666666666 99 2 0 888888888 2 888 4 888888 11 4 3 11 333333 4 7 0 2 888 9 333 4 4444 2 44 7 6 7 7 99 6666666666666 7 0000 99 0 0 0 2222222222 99 7 7 4 7 7 7 7 77 777 7 8888 0 3 7 0000000000000 888 8 000 77 22 7 3 0 7 7 7 2 00 7 2 2 3 0 55555 8 7 7 777 7 22 7 7 777 0000000000000000000000000 666 77 000 0 8 00 2 44 8 00 00 000 000000 8 0 222 88888888 0 5 22 2 55 0 0 0 0 88 888 2 0 0000 0 2222 0 00 000000000000000000000000000000 8 88888 4 2 00 0 4444 0 00 8 0 0 0 0 0 8 0 222 00 6 0 0 000 0 00 00 2 8 0 444 0 00 444444444444 8 00 6 0 0 0 0 0 0 2 0 5 0 2 0 8 0 0 8 2 222222 0 8 8 0 000 8 000 0 66 8 55 00 0 0 6 0 2 2 5 0 0 3
consensus : TAT-CGAGG---G--TTGTCC-CA-AAAA---G--TCGTG--GACAATGT--TAATT-AATTTCCAAACTACGA-C-AT-C------GG-TCCA--AAAGA-TA---------TTTTTTACATTAA---TAAC-T------TTA--ACTT-ACAT-CAAA--CAAAA---G--TGT-AAAATTTAAAAACA---AATAT-CATAT-CAAATAAATG-AGC-N-ATTT-TCAG-ATCTAAGGA-GTGCTC--T-A-----------TGAG-CC--G-T--GTTG-GCGC-ACGTAC-AAATA-C-AAA--GTGNACATTTTCT-A-TG-ATCC-ATT-GGGT-TAGATGA--AAGGGATATAGCTTCATAA-TATATATA-TTTGCATTCGAACTT-TATATCAACGGAATCATTTACGC--GTTTT---GCCCTAT-C-ACACTAGG--GTTTTCAAGC-GTAAGA-CGTCANA-AAT-GG-CAGAGAAATGACAGTCATT-TTAAAACGGCTCTGTAAATGAA-TA-TTTTCAATGTAACGGCAACCACGACATTG-TCG---GCGCACA-GAT--AAAT-TATCAAAAT-TTGT---GTAGATCGCTAAACC-A-C-GA-TTATTGATT-CAGATCAGACAAAACGGGAAGCTGGAA-C-G-ACATCA--GATCACAGGAATGTTAGCT-AAATATGACA--TTG-AA---AA-TATT-TATAAATCATCAGT-ACAATGCCAC-TGCGCATACATCGGCCGCAAATA-GATGTAGAACTCGNGGTTATC-GGACT-TCGACACCCCA-CCTTANTCCCTAGAC-TATA-T-TAGCACCGCTCGGATTTT-GCCTATTTTCTACTT-A-TGANC-G-AGGC-CAGCTTGAGGGGT--AAAC------------G-T-TTG----------CATTT----TGGAGGGA-GGAT-AATA-G-A-GGAGCAGTGAGGAA-ATT-TCAACGTG-TTTCTG-A-ATCAGGCG-TTGGTTT--GAATGT-GTGGTTCGACAAA---TGGCGTG--AAA--CGACAT-GAAAAATGCATCGCGC-ATCGGGGA--CAATGACT---TT-GAAAAAAAAA--CTCTNAT-AACGTCAT-GAC-TT-GTGCGCCGGACAGATAT-GAACATAGGTGNTTGATTTTTGTT-TTATGTTAATATTAAGAGAT-ACA-TTTGATGAAAA-T----TGTACAAAGT-AGTAAAC-AAATGTTNTGCTA---ATAAAT-AGCAAAAGGAAAATTTAAT-CAAC--TTTCTTA-CA-AATAAACGAA-TTATCAAACATTGCCCACGA-CTTTTTGGGA-CAACCCTCGTA-TAT
Reference ( family-302 ) : TAT-CGAGG---G--TTGTCC-CA-AAAA---G--TCGTG--GACAATGT--TAATT-AATTTCCAAACTACGA-C-AT-C------GG-TCCA--AAAGA-TA---------TTTTTTACATTAA---TAAC-T------TTA--ACTT-ACAT-CAAA--CAAAA---G--TGT-AAAATTTAAAAACA---AATAT-CATAT-CAAATAAATG-AGC-N-ATTT-TCAG-ATCTAAGGA-GTGCTC--T-A-----------TGAG-CC--G-T--GTTG-GCGC-ACGTAC-AAATA-C-AAA--GTGNACATTTTCT-A-TG-ATCC-ATT-GGGT-TAGATGA--AAGGGATATAGCTTCATAA-TATATATA-TTTGCATTCGAACTT-TATATCAACGGAATCATTTACGC--GTTTT---GCCCTAT-C-ACACTAGG--GTTTTCAAGC-GTAAGA-CGTCANA-AAT-GG-CAGAGAAATGACAGTCATT-TTAAAACGGCTCTGTAAATGAA-TA-TTTTCAATGTAACGGCAACCACGACATTG-TCG---GCGCACA-GAT--AAAT-TATCAAAAT-TTGT---GTAGATCGCTAAACC-A-C-GA-TTATTGATT-CAGATCAGACAAAACGGGAAGCTGGAA-C-G-ACATCA--GATCACAGGAATGTTAGCT-AAATATGACA--TTN-GA---AA-TATT-TATAAATCATCAGT-ACAATGCCAC-TGCGCATACATCGGCCGCAAATA-GATGTAGAACTCGNGGTTATC-GGACT-TCGACACCCCA-CCTTANTCCCTAGAC-TATA-T-TAGCACCGCTCGGATTTT-GCCTATTTTCTACTT-A-TGANC-G-AGGC-CAGCTTGAGGGGT--AAAC------------G-T-TTG----------CATTT----TGGAGGGA-GGAT-AATA-G-A-GGAGCAGTGAGGAA-ATT-TCAACGTG-TTTCTG-A-ATCAGGCG-TTGGTTT--GAATGT-GTGGTTCGACAAA---TGGCGTG--AAA--CGACAT-GAAAAATGCATCGCGC-ATCGGGGA--CAATGACT---TT-GAAAAAAAAA--CTCTNAT-AACGTCAT-GAC-TT-GTGCGCCGGACAGATAT-GAACATAGGTGNTTGATTTTTGTT-TTATGTTAATATTAAGAGAT-ACA-TTTGATGAAAA-T----TGTACAAAGT-AGTAAAC-AAATGTTNTGCTA---ATAAAT-AGCAAAAGGAAAATTTAAT-CAAC--TTTCTTA-CA-AATAAACGAA-TTATCAAACATTGCCCACGA-CTTTTTGGGA-CAACCCTCGTA-TAT
gi|1 : TAT-CGAGGT--GATTTGTCC-CA-AAAA---G--TCGTG--GACAA-GT--TCATTTAATTTCCAAACTACGA-C-AT-C------AG-TCCA--AAAAA-TA---------TGTGTTA-AT-AA---TAAC-T------TTA--ACTT-ACATTCAAA--CAAAA---GATTGT-AAA-TTTACAAACA---AAT---CATATTCAAATAAATG-AGA-A-ATTT-TCAG-ATCTAAGGA-GTGCTC--T-A-----------TGAT-CC--A-T--GTTG-G-GC-ACGTAC-AAATA-C-AAA--GTGTACATATTCT-A-TG-ATTC-ATTTGGGT-TAGATGACTAAGGGATATAGCTTCATAAATATATATACTTTGCATTCGAATTTATATATCAACGGAATCATTTACGT--GTGTT---GCCCTAT-C-ACACTAGG--GTTTTCAAGCCGTAAGAGCGTCAAA-AATCGG-CAGAGAAATGACAGTCATC-TTAAAACGGCTCTGTAAATGAA-TA-TTTTCATTGTAACGGCAACCACGACATTG-TCG---GCGCACA-GA---AAACATATCAAAAT-TTGT---GTAGATCGCTAAACC-A-C-GA-TTATTG-TT-CAGATCAGACAAAACGGGAAGCTGGAA-C-G-ACA-CA--GATCACAGGAATGTTAGCT-AAATATGATAATTTT-GA---AA-TATT-CATAAATCATCAGT-TCAATGCCAC-TGCGCATACATTGGCTGCAAATA-GATGTAGAACTCGGGGTTATC-GGACT-TCGACACCCCA-CCTTAATCCCTAGAC-TACA-T-TAGCACCGCTCCGATTTT-GCCTATTTTCTACTT-A-TGATC-GCAGGC-CAGTTTGAGGGGT--AAAC------------A-T-TTG----------TATTT----TGAAGGGACGGAT-AATA-G-A-GGAGCAGTAAGGAACATT-TCAACCTG-TTTCTG-A-ATCA-GCGTTTGGTTG--GGATTT-GTGCTTCGACAAA---TGGCGTG--AAA--C-ACATGGAAAAATGGA---CAC-ATGGGGGA--CAATGACT---TTCGAAAAGGAAA--CGCTTAT-AACGTCATGGAC-TTGGTGCGCCGGACAG-TAT-GAACATAGGTGGTTGATTTTTGTT-TTATGTTAATTTTAAGAGAT-ACAGTTTTATGAAAT-G----TGTACAAAGTGAGTAAAC-AAATGTTCTGCTA---ATAAAT-AGCAAAAGGAAAATTTAAT-CAAC--TTTCTTA-CA-AATACACGAATTTATCAAACATTG-TCACGA-CTTTTTGGGA-CAACCTGCGTA-TAT
gi|10 : TTCT---GCC-TAT-C-ACACT-GG--GTTTTCAAGC-GTAAGA-CGTCAAA-AAT-GG-CAGAGAAATGAC-GTCATT-TTAAAACGGCTCTGT-AATGAA-TATTTTTCATTGTAACGGCAACCACGACATTG-TCG---GCGCACA-GAT--AAAT-TATCAAAAT-TTGT---GTAGATCG-TAAACC-ACC-GA-TT-TTGATTCCAGCTCAGACAAAACGGG-AGCTGtt
gi|11 : atgtt-CGAGC---G--TTGTCC-CA-AAAA---A--TCTTT--GGCAATGTTGTAA---AATTTCTAAAATACG--C-AT-C------
gi|11 : AA---TAAC-T------CTA--ACTT-GCAT-CAAA--CAAAT---T--TGT-AAACTTTGAAAG-A---AATTT-CATAA-CAAATAATTG-AAT-T-ATTaaacaaacaaacaacaacaaaaaaaaaacaaaccccaaccccccaaaagaccccccctcccccaaatttggcctgaataactctaacttgcatcaaacaaatttgtaaactttgaaagaaatttcataacaaataattgaattatt
gi|12 : cgagcgttgtcccaaaaaatctttggcaatgttgtaaaatttctaaaatacgcatcaaacaaacaaacaacaacaaaaaaaaaacaaaccccaaccccccaaaagaccccccctcccccaaatttggcctg-CGAGG---G--TTGTCC-CA-AAAA---G--T-----------TTT--AAAAT-AATTTCCAAA--ACAAGC-AT-C------AA--CCA--AAAAA-AAACG------TTTTTGGCATGAA---TAAC-T------CCA--ACTT-ATTT-CAAA--CAAAA---T--TGT-AAACTTT-AAAACA---AATAT-CATAA-CAAAC-AATG-A
gi|13 : aCAGACAAAAC-GGAAGATGGAA-C-GAATATCA--GATCACAGGAATAATAGCA-AAATAAGACA--TTG-AA---AA-TA-T-TATAatta
gi|14 : --TTTCATAACA-AATAATTGAA-TTATTCAACATTGCCCACAA-CTGTTTGGGA-CAACCCTCGTA-TA
gi|15 : TACAAAGT-AGTAA-C-AAATGTT--GCTA---ATAAAT-AGCAAAAG--AAATTTAAT-ggtat
gi|16 : TATCAA-CATTGCCCACGA-CTTTTTGGTA-CAACCCtca
gi|2 : TAT-CGAGGTCGA--TTGTCC-CATAAAA---GAATCGTGTCGACAA-GTA-TA--T-AATTTCCAACCTACGA-C-ATTC------AG-TCCATAAAAGAATA---------CTTTTTACAT-AA---TAAC-T------TTA--ACTT-ACATTCAAA--CAAAA---AGATGTTAAAATTTAACAACA---AATATGCATATTCAAATAAATG-AGA-AGATTT-TCAGTATCTAAGGAAGTGCTC--T-A-----------TGAT-CC--AAT--GTTGCGCGC-ACGTACCAAATA-C-AAA--GT--ACATATTCT-AATGCATTC-ATT-GGGT-TAGATGACTAAGGGATATAGCTTCATAA-TATATATACTTTGCATT-GAACTT-TATATCAACGGAATT-CTTAC-C--GTTTTTCTGCCCTAT-CCACACT-GG--GTTTTCAAG--GTAAGAGCGACAAA-AAT-GGGCAGAGAAATGACAGTCATTCTTAAAACGGCTCTGTAA-TGA--TA-TTTTCA-TTTAACG-CAAC-ACGACATTGCTCG---G-GCACAAGATTAAAGA-TATCAAAAT-TTGTCTTGTAGATCGCTAAACCCA-CCGACTTATCG----CACATCAGACAAAACGGGA-GCTGGAA-CCG-ACATCA--GAT-ACAGGAAT-TTAGCT-AAAT-TGATA--TTTTGA---AACTATTATATGAATCATCAGT-ACAATGCCACCTGCGCATACATTG-CTG-AAATA-GATGT-GAACTCCGGGTTATCCGGACTGTCGACACCCCAGCCTTAATCCCTAGACCTACA-T-TAGCACCGCTCG-ATTTT-GCCTATTTTCTACT--A-TGATC-G-AGGC-CAGTTTGAGGGGT--AAAC------------AAT-TTG----------TATTT----TGAAGG-A-GGATGAATA-GCA-GCAGCAGTAAGGAA-ATTCTCAACCTGATTTCTGCATATCAG-CG-T-GCTTTTGGGATGTTGTGACTCGACAAAATACGGCGTG--AAAAACAACAT-GAAAAATG----ACAC-ATCGGGGGACCAATGACT---TT-GAAAAGAA----CGCTTAT-AACGTCAT-GAC-TT-GGTCGCCGGACAGATAT-GAACATAGGTGGTTGATTTTTGTT-TTATGTTAAT-TTAAGAGAT-ACA-TTT-ATG-AAA-T----TGTACAAAGT-AGTAAAC-AAATGTTCTGCTA---ATAAAT-AGCAAAA-GAAAATTTAAT-CAAC--TTTCTTA-CA-AATACACGAA-
gi|3 : gcataTATACGAGG---G--TTCTCC----AAAA---G--TCGTG--GACAATGT--TAAT--AATT-CCAAACTAC-A-C-A---------GA-TCCA--AAAGA-TA----------TTTTTACATTAA---TAACTT------TTA--ACTT-ACAT-CAAA--CAAAA---G--TGT-AAAATTTAAAAACA---AATAT-CAT----AAATAAATG-AGC-T-A-TT-TCAG-AT---AAGA-GTGCTC--TAA-----------TGAG-CC--G-T--GTTG-GCGC-ACGTAC-AAAT-----AA--GTGTACATTTTCT-A-TG-ATCC-ATT-GGTT-TAAATGA--AAGGATTATAGCTTAATAA-TATATA-----TGCATT-GAACTT-TAT-TCAACGAAG--A-TTATAT--GTTTT---GTCTAAT-T-ATACT-GG--ATTTTCAAGC-GCAAGA-CGTCATA-AAT-GG-CAGAGAAATGAC-GTCATT-TTAAAACGGATCTG--AATAA---G-TTTTCAATGTAACGGCAACCACG-CGTCG-TCG---GCGCACA-GAT---AAT-TA-CAAAGTGTTGT---GTAGAT-------CC-G-T-GG-TTG--GATT-C--ATTAGACAAAACGGG-CGCT-GAA-C-G-ACATCAAGAATCACAAGAAT-TTA-CTAAAATATGACA--TTG-AA---AA-------ATAAATCATCAGTAACAATGCC-C-TGCACGTACA-----CGTGAATACGATGT-GAACTCGTGG-TATC--GACT-TCGACA-CCCA-CCTTATTCCCTACCT-TATA---TAGCACGCCTCGGATTTG-GCCTATTTTCTAATT-ACNNNNN-N-NNNN-NNNNNNNNNNNNN--NNACTTAAGAAGGCCAG-C-TTGAGGGGGCAAACATTTGATTTGGAAGGA--GAT-AATA-G-A-GGAGCAGTGAGG-A-ATT-TCAACGTG-TTTCTG-A-ATCAGGCG--TGGTTT--GAAGAT-GT-GTTTGACAAA---TGG-GTG--AAA--CTAC-----AAAACGCATCGCGC-AGCGGGGA--CAAT-ACTAAAAT-G-AAAAAGAA--CTCTAAT-AACGTCAT-GAC-TT-GTGCGCC-AACAGATAT-GAACATAGGTGTTTGATTTTTGTT-TTATGTTAATATTAAGAGAT-ACATTTTGATGAAAATT----TGTACAGAGT-AGT--ACTAAATG--ATGCTAATTATAAAT-AGCAAAAG--AAATTTAATACAAT--TTTCTTA-CA-AATAAACGA
gi|4 : caA---G--TCGTG--GACAATGT--TAAT--AATTTCCAAACTACG--C-AT-C------AGATCCA--AAA-A-TA---------TTTTTTACATTAA---TAAC-T------TTA--GCTT-ACAT-CAAA--CAAAA---G--TGT-AAAATCTAAAA-CA---AATAT-CATAA-CAAATAAATG-AGC-G-ATTT-AC----TCTA---------TC--T----------------G-CC--A-T--GTTG-GAGC-ACGCAC-AAATGTC-A----TTAAACATTTTCT-A-TA-ATCC-ACT-GGGA-TAGATGA--AAGA-ATATAGCTTCATGA-TAGATAT--TTTGCATTCAAA-TT-CATATCAACGGAATC-TGTG-GT--GTTTTCT-GCCTAAT---ACAC-AAG--GTTTTTAAGC-GTATGA-CGTCATA-AAT-GG-TAGAG-----ACA---------------------TAAAT--A-GA-TTT--AATGTAACGGTAACCAAGACATTG-TCA---GCGCACA-GAT--AAAT-TATCAAATT-TTGT---GTAGATCG----------T-GG-TT-TTACTC-CAACTCAGACAAAACGGG-AGATGGAAGG-G-ACATCA--GATCACAGAAATGTTAGCA-TACCATGACA--TTG-AACATAA-TATT-T----ATCATCATT-ACAATGCCCT-TGCGCACACATCGGCCA-AAATA-GATCTAGAACTCATGGTCATC-GGACT-TTGACA-CCCA-CCTTGCTCCCTAGAC--ATATT-TAGCACGGCTCAATTTTT-GCCTATTTTCTACTT-T-TGAAC-----GC-CAGCTTAAGGGGC--AAAC------------G-T-TTG-----------A-TT----TGGATGGA--GAT-ATTT-T-A-GGAGCAGTG-GGGA-ATT-TCAACGTG-TCTCTG-A-ATCAGGCG--TGGTTT--GAATGT-GT-GTTTGACTAA---TGG-GCG--AAA--CGGCAT-GGAAAATGCATCGCGC-TTCGGGGA--CAAT-ACT---T----AAAAAAAACCCTCTGAT-AACGTCAT-GAT-TT-
gi|5 : C-CATA-TATAGCACCGCTCG-ATTTTAGCCTATTTCATACTTCA-TGAAAAG-TGGCGCAGCTTGAGCGGTGCAAAC------------A-TATTG----------CATTT---------GGA-GAAT-AATTTG-ATGGAGCAGTT--GAA-ATT-T-AACGTG-TCTCCT-A-A-CACG-G-TGGGTTT--GAAGGC--TGGTTTGACAAA---TGAGGTGGAAAA--CGACAT-GAAAAATGCATCGCGCAATCGGGGA--AAAT-AC----TT-GAAAAAAAAA--CTCTGATAAACGTCAT-GACTTT-GTGCGCC-GACAGATATAGGACATA-GTCTTTAA-TTTTGTTATTCTGTTAATATTAAGAGATAACA-TTTGATGAAAA-TTCAGTGTACAAATT-AGTAAAC-AAATG--ATGC-A---AAAAATCAG-AAAAGGAAAG-TTAAT---ACTATTTCTTA-CAGAATAAATGAA-TTATCAACCA-TGTCCACGAGCTTTTTGGGAGCAACCCTCGTAGTAT
gi|6 : -CGAGG---G--TTGTCC-CA-AAAA---G--TCGTG--GACAATGT--TAAT--AATTTCCAAACTAC-A-C-A---------GA-TCCA--AAAGA-TA---------TTTT-TACATTAA---TAAC-T------TTA--ACTT-ACAT-CAAA--CAAAA---G--TGT-AAAATTTAAAAACA---AATAT-CATAT--AAATAAATG-AGC-T-A-TT-TCAG-AT---AAGA-GTGCTC--TAA-----------TGAG-CC--G-T--GTTG-GCGC-ACGTAC-AAA-----AAA--GTGTACATTTT-T-A-TG-ATCCAATT-GGTT-TAAATGA--AA-GGATATAGCTTAATAA-TATATATA--TTGCATT-GAACTT-TATATCg
gi|7 : -CGAGG---G--T-GTCCACA-AAAAAAAG--TCGTG--GACCATGTG-TAAT--AATTTTC---CTAAGA-TGAT-CTGCTCAGA-TCCT--AATGA-TACTTACTTTATTTCTCACATTAGATTTAAT-TCACACATTAGAACTTGACAGGCAAATGCAAAATAAG--TGT-AAATTTTTAAAGCAGGTAATATGCATAT-GAATTAAATGAAGCAT-ATTTATCAG-AT-TAAG---GTGGTC--T-ACTCATCAGAATTGAGACCAAA-TAAGTTGCGCGCGACGTAC-AGATA-CTAGG--GTGAACATTTTtggttattctctgctacaatgttttc
gi|8 : ta--GTTG-GCGC-AC-TAC-AAATA---AGGTCGTGAACATTTTCTGA-TGGATCC-ATT-GGGGGTA-ATGA--AAG--ATTTAACTTCATAA-TAAA---A-TC-GCATTCAAA--T-TATATCAACGGA--CATCTATGCATGTTTT----CTGTATGT-ATACGAGGTCGTTT-CAAGC-GTAAGA-CGTCATGTAAT-G--CAGGGAA-TGAC--TCATT-TTAAA-CGTCTCTGTAA-TGAAGTT-TTCTCAATG-AACG-CAACCACGACCTTG-TTGTACGCGCACA-GAT--AAAT-TATC--AAT-TTGT---GTAGATgccgatatattgattactaaat
gi|9 : cT-AATTTCCAAACTACG--C-AT-C------AGATCCA--AAAGA-T----------TTTTTTACATTAA---TAAC-T------TTA--ACTT-ACAT-CAAA--CAAAA---G--TGT-AAAATTTAAAA-CA---AATAT-CATAT-CAAATACATG-AGA-A-ATTT--CAG-AT-TAAGGA-GTGCTCAGT-A-----------TGAG-CC--A-T--GTTG-GCGC-ACGTAC-AA------------------TTTTCT-A-TG-ATTC-ATC-GGGT-TAGATGA--AA-GGATATAGCTTCATAA-tcgtgt
Alignments
lowQualScore : 111111 22222222 222222222222222222 222222222 111111 1 111111 111 1111 1 3333333333333 1111 1 2222222222 1 11 2222 1 2222222222222 222 111 11 1 11 11111 111 111 2222222222222222222222222 11 111 11 1 111 11 111 1 111 11111111 1 1 11 1 1 1 11 111 1 1111 2222 11 666666666666666666666666666666 11111 11 1111 11 222 11 1 111 1 11 11 11 222222222222 11 1 1 1 1 2 222222 222 111 11 11 11 1 1 1 1
lowQualScore : 5 555555 5 5 888 66 66 3 55555555 444444444444444444 66 0 5 888888888 6 777 4 222222 66 4 3 66 777777 4 4 1 5 777 8 222 4 2222 3 77 5 8 0 5 77 6666666666666 5 5555 66 0 5 5 9999999999 55 5 5 1 5 5 5 1 55 666 5 2222 5 9 6 6666666666666 000 7 777 88 99 6 3 1 6 6 6 3 88 6 3 3 7 1 77777 7 6 6 111 6 99 6 6 111 8888888888888888888888888 444 88 111 8 0 11 3 99 0 444 11 0 444 0 999 0 0 333 99999999 0 5 11 3 22 0 5 0 1 11 666 3 8 3333 1 1111 8 11 444444444444444444444444444444 0 77777 1 3 88 8 2222 8 22 3 8 8 8 8 8 0 5 444 11 0 8 0 444 5 11 11 8 0 8 666 8 11 111111111111 0 11 0 1 8 8 8 8 5 3 0 2 1 3 0 9 0 0 8 3 888888 8 0 0 8 000 0 444 8 00 0 00 11 8 8 0 0 9 3 6 0 0 3
lowQualScore : . ...... . . ... .. .. . ........ .................. .. . . ......... . ... . ...... .. . . .. ...... . . . . ... . ... . .... . .. . . . . .. ............. . .... .. . . . .......... .. . . . . . . . .. ... . .... . . . ............. ... . ... .. .. . . . . . . . .. . . . . . ..... . . . ... . .. . . ... ......................... ... .. ... . . .. . .. . ... .. . ... . ... . . ... ........ . . .. . .. . . . . .. ... . . .... . .... . .. .............................. . ..... . . .. . .... . .. . . . . . . . . ... .. . . . ... . .. .. . . . ... . .. ............ . .. . . . . . . . . . . . . . . . . . . ...... . . . . ... . ... . .. . .. .. . . . . . . . . . .
lowQualScore : 7 999999 7 7 888 99 99 2 55555555 666666666666666666 99 2 0 888888888 2 888 4 888888 11 4 3 11 333333 4 7 0 2 888 9 333 4 4444 2 44 7 6 7 7 99 6666666666666 7 0000 99 0 0 0 2222222222 99 7 7 4 7 7 7 7 77 777 7 8888 0 3 7 0000000000000 888 8 000 77 22 7 3 0 7 7 7 2 00 7 2 2 3 0 55555 8 7 7 777 7 22 7 7 777 0000000000000000000000000 666 77 000 0 8 00 2 44 8 000 00 8 000 8 444 8 0 222 88888888 0 5 22 2 55 0 0 0 0 88 888 2 0 0000 0 2222 0 00 000000000000000000000000000000 8 88888 4 2 00 0 4444 0 00 8 0 0 0 0 0 8 0 222 00 6 0 0 000 0 00 00 2 8 0 444 0 00 444444444444 8 00 6 0 0 0 0 0 0 2 0 5 0 2 0 8 0 0 8 2 222222 0 8 8 0 000 8 000 0 66 8 55 00 0 0 6 0 2 2 5 0 0 3
consensus : TAT-CGAGG---G--TTGTCC-CA-AAAA---G--TCGTG--GACAATGT--TAATT-AATTTCCAAACTACGA-C-AT-C------GG-TCCA--AAAGA-TA---------TTTTTTACATTAA---TAAC-T------TTA--ACTT-ACAT-CAAA--CAAAA---G--TGT-AAAATTTAAAAACA---AATAT-CATAT-CAAATAAATG-AGC-N-ATTT-TCAG-ATCTAAGGA-GTGCTC--T-A-----------TGAG-CC--G-T--GTTG-GCGC-ACGTAC-AAATA-C-AAA--GTGNACATTTTCT-A-TG-ATCC-ATT-GGGT-TAGATGA--AAGGGATATAGCTTCATAA-TATATATA-TTTGCATTCGAACTT-TATATCAACGGAATCATTTACGC--GTTTT---GCCCTAT-C-ACACTAGG--GTTTTCAAGC-GTAAGA-CGTCANA-AAT-GG-CAGAGAAATGACAGTCATT-TTAAAACGGCTCTGTAAATGAA-TA-TTTTCAATGTAACGGCAACCACGACATTG-TCG---GCGCACA-GAT--AAAT-TATCAAAAT-TTGT---GTAGATCGCTAAACC-A-C-GA-TTATTGATT-CAGATCAGACAAAACGGGAAGCTGGAA-C-G-ACATCA--GATCACAGGAATGTTAGCT-AAATATGACA---TT--GAA---AATATT-TATAAATCATCAGT-ACAATGCCAC-TGCGCATACATCGGCCGCAAATA-GATGTAGAACTCGNGGTTATC-GGACT-TCGACACCCCA-CCTTANTCCCTAGAC-TATA-T-TAGCACCGCTCGGATTTT-GCCTATTTTCTACTT-A-TGANC-G-AGGC-CAGCTTGAGGGGT--AAAC------------G-T-TTG----------CATTT----TGGAGGGA-GGAT-AATA-G-A-GGAGCAGTGAGGAA-ATT-TCAACGTG-TTTCTG-A-ATCAGGCG-TTGGTTT--GAATGT-GTGGTTCGACAAA---TGGCGTG--AAA--CGACAT-GAAAAATGCATCGCGC-ATCGGGGA--CAATGACT---TT-GAAAAAAAAA--CTCTNAT-AACGTCAT-GAC-TT-GTGCGCCGGACAGATAT-GAACATAGGTGNTTGATTTTTGTT-TTATGTTAATATTAAGAGAT-ACA-TTTGATGAAAA-T----TGTACAAAGT-AGTAAAC-AAATGTTNTGCTA---ATAAAT-AGCAAAAGGAAAATTTAAT-CAAC--TTTCTTA-CA-AATAAACGAA-TTATCAAACATTGCCCACGA-CTTTTTGGGA-CAACCCTCGTA-TAT
Reference ( family-302 ) : TAT-CGAGG---G--TTGTCC-CA-AAAA---G--TCGTG--GACAATGT--TAATT-AATTTCCAAACTACGA-C-AT-C------GG-TCCA--AAAGA-TA---------TTTTTTACATTAA---TAAC-T------TTA--ACTT-ACAT-CAAA--CAAAA---G--TGT-AAAATTTAAAAACA---AATAT-CATAT-CAAATAAATG-AGC-N-ATTT-TCAG-ATCTAAGGA-GTGCTC--T-A-----------TGAG-CC--G-T--GTTG-GCGC-ACGTAC-AAATA-C-AAA--GTGNACATTTTCT-A-TG-ATCC-ATT-GGGT-TAGATGA--AAGGGATATAGCTTCATAA-TATATATA-TTTGCATTCGAACTT-TATATCAACGGAATCATTTACGC--GTTTT---GCCCTAT-C-ACACTAGG--GTTTTCAAGC-GTAAGA-CGTCANA-AAT-GG-CAGAGAAATGACAGTCATT-TTAAAACGGCTCTGTAAATGAA-TA-TTTTCAATGTAACGGCAACCACGACATTG-TCG---GCGCACA-GAT--AAAT-TATCAAAAT-TTGT---GTAGATCGCTAAACC-A-C-GA-TTATTGATT-CAGATCAGACAAAACGGGAAGCTGGAA-C-G-ACATCA--GATCACAGGAATGTTAGCT-AAATATGACA---TT--GAA---AATATT-TATAAATCATCAGT-ACAATGCCAC-TGCGCATACATCGGCCGCAAATA-GATGTAGAACTCGNGGTTATC-GGACT-TCGACACCCCA-CCTTANTCCCTAGAC-TATA-T-TAGCACCGCTCGGATTTT-GCCTATTTTCTACTT-A-TGANC-G-AGGC-CAGCTTGAGGGGT--AAAC------------G-T-TTG----------CATTT----TGGAGGGA-GGAT-AATA-G-A-GGAGCAGTGAGGAA-ATT-TCAACGTG-TTTCTG-A-ATCAGGCG-TTGGTTT--GAATGT-GTGGTTCGACAAA---TGGCGTG--AAA--CGACAT-GAAAAATGCATCGCGC-ATCGGGGA--CAATGACT---TT-GAAAAAAAAA--CTCTNAT-AACGTCAT-GAC-TT-GTGCGCCGGACAGATAT-GAACATAGGTGNTTGATTTTTGTT-TTATGTTAATATTAAGAGAT-ACA-TTTGATGAAAA-T----TGTACAAAGT-AGTAAAC-AAATGTTNTGCTA---ATAAAT-AGCAAAAGGAAAATTTAAT-CAAC--TTTCTTA-CA-AATAAACGAA-TTATCAAACATTGCCCACGA-CTTTTTGGGA-CAACCCTCGTA-TAT
gi|1 : TAT-CGAGGT--GATTTGTCC-CA-AAAA---G--TCGTG--GACAA-GT--TCATTTAATTTCCAAACTACGA-C-AT-C------AG-TCCA--AAAAA-TA---------TGTGTTA-AT-AA---TAAC-T------TTA--ACTT-ACATTCAAA--CAAAA---GATTGT-AAA-TTTACAAACA---AAT---CATATTCAAATAAATG-AGA-A-ATTT-TCAG-ATCTAAGGA-GTGCTC--T-A-----------TGAT-CC--A-T--GTTG-G-GC-ACGTAC-AAATA-C-AAA--GTGTACATATTCT-A-TG-ATTC-ATTTGGGT-TAGATGACTAAGGGATATAGCTTCATAAATATATATACTTTGCATTCGAATTTATATATCAACGGAATCATTTACGT--GTGTT---GCCCTAT-C-ACACTAGG--GTTTTCAAGCCGTAAGAGCGTCAAA-AATCGG-CAGAGAAATGACAGTCATC-TTAAAACGGCTCTGTAAATGAA-TA-TTTTCATTGTAACGGCAACCACGACATTG-TCG---GCGCACA-GA---AAACATATCAAAAT-TTGT---GTAGATCGCTAAACC-A-C-GA-TTATTG-TT-CAGATCAGACAAAACGGGAAGCTGGAA-C-G-ACA-CA--GATCACAGGAATGTTAGCT-AAATATGATAATTTT--G-A---AATATT-CATAAATCATCAGT-TCAATGCCAC-TGCGCATACATTGGCTGCAAATA-GATGTAGAACTCGGGGTTATC-GGACT-TCGACACCCCA-CCTTAATCCCTAGAC-TACA-T-TAGCACCGCTCCGATTTT-GCCTATTTTCTACTT-A-TGATC-GCAGGC-CAGTTTGAGGGGT--AAAC------------A-T-TTG----------TATTT----TGAAGGGACGGAT-AATA-G-A-GGAGCAGTAAGGAACATT-TCAACCTG-TTTCTG-A-ATCA-GCGTTTGGTTG--GGATTT-GTGCTTCGACAAA---TGGCGTG--AAA--C-ACATGGAAAAATGGA---CAC-ATGGGGGA--CAATGACT---TTCGAAAAGGAAA--CGCTTAT-AACGTCATGGAC-TTGGTGCGCCGGACAG-TAT-GAACATAGGTGGTTGATTTTTGTT-TTATGTTAATTTTAAGAGAT-ACAGTTTTATGAAAT-G----TGTACAAAGTGAGTAAAC-AAATGTTCTGCTA---ATAAAT-AGCAAAAGGAAAATTTAAT-CAAC--TTTCTTA-CA-AATACACGAATTTATCAAACATTG-TCACGA-CTTTTTGGGA-CAACCTGCGTA-TAT
gi|10 : TTCT---GCC-TAT-C-ACACT-GG--GTTTTCAAGC-GTAAGA-CGTCAAA-AAT-GG-CAGAGAAATGAC-GTCATT-TTAAAACGGCTCTGT-AATGAA-TATTTTTCATTGTAACGGCAACCACGACATTG-TCG---GCGCACA-GAT--AAAT-TATCAAAAT-TTGT---GTAGATCG-TAAACC-ACC-GA-TT-TTGATTCCAGCTCAGACAAAACGGG-AGCTGtt
gi|11 : atgtt-CGAGC---G--TTGTCC-CA-AAAA---A--TCTTT--GGCAATGTTGTAA---AATTTCTAAAATACG--C-AT-C------
gi|11 : AA---TAAC-T------CTA--ACTT-GCAT-CAAA--CAAAT---T--TGT-AAACTTTGAAAG-A---AATTT-CATAA-CAAATAATTG-AAT-T-ATTaaacaaacaaacaacaacaaaaaaaaaacaaaccccaaccccccaaaagaccccccctcccccaaatttggcctgaataactctaacttgcatcaaacaaatttgtaaactttgaaagaaatttcataacaaataattgaattatt
gi|12 : cgagcgttgtcccaaaaaatctttggcaatgttgtaaaatttctaaaatacgcatcaaacaaacaaacaacaacaaaaaaaaaacaaaccccaaccccccaaaagaccccccctcccccaaatttggcctg-CGAGG---G--TTGTCC-CA-AAAA---G--T-----------TTT--AAAAT-AATTTCCAAA--ACAAGC-AT-C------AA--CCA--AAAAA-AAACG------TTTTTGGCATGAA---TAAC-T------CCA--ACTT-ATTT-CAAA--CAAAA---T--TGT-AAACTTT-AAAACA---AATAT-CATAA-CAAAC-AATG-A
gi|13 : aCAGACAAAAC-GGAAGATGGAA-C-GAATATCA--GATCACAGGAATAATAGCA-AAATAAGACA---TT--GAA---AATA-T-TATAatta
gi|14 : --TTTCATAACA-AATAATTGAA-TTATTCAACATTGCCCACAA-CTGTTTGGGA-CAACCCTCGTA-TA
gi|15 : TACAAAGT-AGTAA-C-AAATGTT--GCTA---ATAAAT-AGCAAAAG--AAATTTAAT-ggtat
gi|16 : TATCAA-CATTGCCCACGA-CTTTTTGGTA-CAACCCtca
gi|2 : TAT-CGAGGTCGA--TTGTCC-CATAAAA---GAATCGTGTCGACAA-GTA-TA--T-AATTTCCAACCTACGA-C-ATTC------AG-TCCATAAAAGAATA---------CTTTTTACAT-AA---TAAC-T------TTA--ACTT-ACATTCAAA--CAAAA---AGATGTTAAAATTTAACAACA---AATATGCATATTCAAATAAATG-AGA-AGATTT-TCAGTATCTAAGGAAGTGCTC--T-A-----------TGAT-CC--AAT--GTTGCGCGC-ACGTACCAAATA-C-AAA--GT--ACATATTCT-AATGCATTC-ATT-GGGT-TAGATGACTAAGGGATATAGCTTCATAA-TATATATACTTTGCATT-GAACTT-TATATCAACGGAATT-CTTAC-C--GTTTTTCTGCCCTAT-CCACACT-GG--GTTTTCAAG--GTAAGAGCGACAAA-AAT-GGGCAGAGAAATGACAGTCATTCTTAAAACGGCTCTGTAA-TGA--TA-TTTTCA-TTTAACG-CAAC-ACGACATTGCTCG---G-GCACAAGATTAAAGA-TATCAAAAT-TTGTCTTGTAGATCGCTAAACCCA-CCGACTTATCG----CACATCAGACAAAACGGGA-GCTGGAA-CCG-ACATCA--GAT-ACAGGAAT-TTAGCT-AAAT-TGATA---TTTTGAA---ACTATTATATGAATCATCAGT-ACAATGCCACCTGCGCATACATTG-CTG-AAATA-GATGT-GAACTCCGGGTTATCCGGACTGTCGACACCCCAGCCTTAATCCCTAGACCTACA-T-TAGCACCGCTCG-ATTTT-GCCTATTTTCTACT--A-TGATC-G-AGGC-CAGTTTGAGGGGT--AAAC------------AAT-TTG----------TATTT----TGAAGG-A-GGATGAATA-GCA-GCAGCAGTAAGGAA-ATTCTCAACCTGATTTCTGCATATCAG-CG-T-GCTTTTGGGATGTTGTGACTCGACAAAATACGGCGTG--AAAAACAACAT-GAAAAATG----ACAC-ATCGGGGGACCAATGACT---TT-GAAAAGAA----CGCTTAT-AACGTCAT-GAC-TT-GGTCGCCGGACAGATAT-GAACATAGGTGGTTGATTTTTGTT-TTATGTTAAT-TTAAGAGAT-ACA-TTT-ATG-AAA-T----TGTACAAAGT-AGTAAAC-AAATGTTCTGCTA---ATAAAT-AGCAAAA-GAAAATTTAAT-CAAC--TTTCTTA-CA-AATACACGAA-
gi|3 : gcataTATACGAGG---G--TTCTCC----AAAA---G--TCGTG--GACAATGT--TAAT--AATT-CCAAACTAC-A-C-A---------GA-TCCA--AAAGA-TA----------TTTTTACATTAA---TAACTT------TTA--ACTT-ACAT-CAAA--CAAAA---G--TGT-AAAATTTAAAAACA---AATAT-CAT----AAATAAATG-AGC-T-A-TT-TCAG-AT---AAGA-GTGCTC--TAA-----------TGAG-CC--G-T--GTTG-GCGC-ACGTAC-AAAT-----AA--GTGTACATTTTCT-A-TG-ATCC-ATT-GGTT-TAAATGA--AAGGATTATAGCTTAATAA-TATATA-----TGCATT-GAACTT-TAT-TCAACGAAG--A-TTATAT--GTTTT---GTCTAAT-T-ATACT-GG--ATTTTCAAGC-GCAAGA-CGTCATA-AAT-GG-CAGAGAAATGAC-GTCATT-TTAAAACGGATCTG--AATAA---G-TTTTCAATGTAACGGCAACCACG-CGTCG-TCG---GCGCACA-GAT---AAT-TA-CAAAGTGTTGT---GTAGAT-------CC-G-T-GG-TTG--GATT-C--ATTAGACAAAACGGG-CGCT-GAA-C-G-ACATCAAGAATCACAAGAAT-TTA-CTAAAATATGACA---TT--GAA---AA------ATAAATCATCAGTAACAATGCC-C-TGCACGTACA-----CGTGAATACGATGT-GAACTCGTGG-TATC--GACT-TCGACA-CCCA-CCTTATTCCCTACCT-TATA---TAGCACGCCTCGGATTTG-GCCTATTTTCTAATT-ACNNNNN-N-NNNN-NNNNNNNNNNNNN--NNACTTAAGAAGGCCAG-C-TTGAGGGGGCAAACATTTGATTTGGAAGGA--GAT-AATA-G-A-GGAGCAGTGAGG-A-ATT-TCAACGTG-TTTCTG-A-ATCAGGCG--TGGTTT--GAAGAT-GT-GTTTGACAAA---TGG-GTG--AAA--CTAC-----AAAACGCATCGCGC-AGCGGGGA--CAAT-ACTAAAAT-G-AAAAAGAA--CTCTAAT-AACGTCAT-GAC-TT-GTGCGCC-AACAGATAT-GAACATAGGTGTTTGATTTTTGTT-TTATGTTAATATTAAGAGAT-ACATTTTGATGAAAATT----TGTACAGAGT-AGT--ACTAAATG--ATGCTAATTATAAAT-AGCAAAAG--AAATTTAATACAAT--TTTCTTA-CA-AATAAACGA
gi|4 : caA---G--TCGTG--GACAATGT--TAAT--AATTTCCAAACTACG--C-AT-C------AGATCCA--AAA-A-TA---------TTTTTTACATTAA---TAAC-T------TTA--GCTT-ACAT-CAAA--CAAAA---G--TGT-AAAATCTAAAA-CA---AATAT-CATAA-CAAATAAATG-AGC-G-ATTT-AC----TCTA---------TC--T----------------G-CC--A-T--GTTG-GAGC-ACGCAC-AAATGTC-A----TTAAACATTTTCT-A-TA-ATCC-ACT-GGGA-TAGATGA--AAGA-ATATAGCTTCATGA-TAGATAT--TTTGCATTCAAA-TT-CATATCAACGGAATC-TGTG-GT--GTTTTCT-GCCTAAT---ACAC-AAG--GTTTTTAAGC-GTATGA-CGTCATA-AAT-GG-TAGAG-----ACA---------------------TAAAT--A-GA-TTT--AATGTAACGGTAACCAAGACATTG-TCA---GCGCACA-GAT--AAAT-TATCAAATT-TTGT---GTAGATCG----------T-GG-TT-TTACTC-CAACTCAGACAAAACGGG-AGATGGAAGG-G-ACATCA--GATCACAGAAATGTTAGCA-TACCATGACA---TT--GAACATAATATT-T----ATCATCATT-ACAATGCCCT-TGCGCACACATCGGCCA-AAATA-GATCTAGAACTCATGGTCATC-GGACT-TTGACA-CCCA-CCTTGCTCCCTAGAC--ATATT-TAGCACGGCTCAATTTTT-GCCTATTTTCTACTT-T-TGAAC-----GC-CAGCTTAAGGGGC--AAAC------------G-T-TTG-----------A-TT----TGGATGGA--GAT-ATTT-T-A-GGAGCAGTG-GGGA-ATT-TCAACGTG-TCTCTG-A-ATCAGGCG--TGGTTT--GAATGT-GT-GTTTGACTAA---TGG-GCG--AAA--CGGCAT-GGAAAATGCATCGCGC-TTCGGGGA--CAAT-ACT---T----AAAAAAAACCCTCTGAT-AACGTCAT-GAT-TT-
gi|5 : C-CATA-TATAGCACCGCTCG-ATTTTAGCCTATTTCATACTTCA-TGAAAAG-TGGCGCAGCTTGAGCGGTGCAAAC------------A-TATTG----------CATTT---------GGA-GAAT-AATTTG-ATGGAGCAGTT--GAA-ATT-T-AACGTG-TCTCCT-A-A-CACG-G-TGGGTTT--GAAGGC--TGGTTTGACAAA---TGAGGTGGAAAA--CGACAT-GAAAAATGCATCGCGCAATCGGGGA--AAAT-AC----TT-GAAAAAAAAA--CTCTGATAAACGTCAT-GACTTT-GTGCGCC-GACAGATATAGGACATA-GTCTTTAA-TTTTGTTATTCTGTTAATATTAAGAGATAACA-TTTGATGAAAA-TTCAGTGTACAAATT-AGTAAAC-AAATG--ATGC-A---AAAAATCAG-AAAAGGAAAG-TTAAT---ACTATTTCTTA-CAGAATAAATGAA-TTATCAACCA-TGTCCACGAGCTTTTTGGGAGCAACCCTCGTAGTAT
gi|6 : -CGAGG---G--TTGTCC-CA-AAAA---G--TCGTG--GACAATGT--TAAT--AATTTCCAAACTAC-A-C-A---------GA-TCCA--AAAGA-TA---------TTTT-TACATTAA---TAAC-T------TTA--ACTT-ACAT-CAAA--CAAAA---G--TGT-AAAATTTAAAAACA---AATAT-CATAT--AAATAAATG-AGC-T-A-TT-TCAG-AT---AAGA-GTGCTC--TAA-----------TGAG-CC--G-T--GTTG-GCGC-ACGTAC-AAA-----AAA--GTGTACATTTT-T-A-TG-ATCCAATT-GGTT-TAAATGA--AA-GGATATAGCTTAATAA-TATATATA--TTGCATT-GAACTT-TATATCg
gi|7 : -CGAGG---G--T-GTCCACA-AAAAAAAG--TCGTG--GACCATGTG-TAAT--AATTTTC---CTAAGA-TGAT-CTGCTCAGA-TCCT--AATGA-TACTTACTTTATTTCTCACATTAGATTTAAT-TCACACATTAGAACTTGACAGGCAAATGCAAAATAAG--TGT-AAATTTTTAAAGCAGGTAATATGCATAT-GAATTAAATGAAGCAT-ATTTATCAG-AT-TAAG---GTGGTC--T-ACTCATCAGAATTGAGACCAAA-TAAGTTGCGCGCGACGTAC-AGATA-CTAGG--GTGAACATTTTtggttattctctgctacaatgttttc
gi|8 : ta--GTTG-GCGC-AC-TAC-AAATA---AGGTCGTGAACATTTTCTGA-TGGATCC-ATT-GGGGGTA-ATGA--AAG--ATTTAACTTCATAA-TAAA---A-TC-GCATTCAAA--T-TATATCAACGGA--CATCTATGCATGTTTT----CTGTATGT-ATACGAGGTCGTTT-CAAGC-GTAAGA-CGTCATGTAAT-G--CAGGGAA-TGAC--TCATT-TTAAA-CGTCTCTGTAA-TGAAGTT-TTCTCAATG-AACG-CAACCACGACCTTG-TTGTACGCGCACA-GAT--AAAT-TATC--AAT-TTGT---GTAGATgccgatatattgattactaaat
gi|9 : cT-AATTTCCAAACTACG--C-AT-C------AGATCCA--AAAGA-T----------TTTTTTACATTAA---TAAC-T------TTA--ACTT-ACAT-CAAA--CAAAA---G--TGT-AAAATTTAAAA-CA---AATAT-CATAT-CAAATACATG-AGA-A-ATTT--CAG-AT-TAAGGA-GTGCTCAGT-A-----------TGAG-CC--A-T--GTTG-GCGC-ACGTAC-AA------------------TTTTCT-A-TG-ATTC-ATC-GGGT-TAGATGA--AA-GGATATAGCTTCATAA-tcgtgt
Alignments
lowQualScore : 111111 22222222 222222222222222222 222222222 111111 1 111111 111 1111 1 3333333333333 1111 1 2222222222 1 11 2222 1 2222222222222 222 111 11 1 11 11111 111 111 2222222222222222222222222 11 111 11 1 111 11 111 1 111 11111111 1 1 11 1 1 1 11 111 1 1111 2222 11 666666666666666666666666666666 11111 11 1111 11 222 11 1 111 1 11 11 11 222222222222 11 1 1 1 1 2 222222 222 111 11 11 11 1 1 1 1
lowQualScore : 5 555555 5 5 888 66 66 3 55555555 444444444444444444 66 0 5 888888888 6 777 4 222222 66 4 3 66 777777 4 4 1 5 777 8 222 4 2222 3 77 5 8 0 5 77 6666666666666 5 5555 66 0 5 5 9999999999 55 5 5 1 5 5 5 1 55 666 5 2222 5 9 6 6666666666666 000 7 777 88 99 6 3 1 6 6 6 3 88 6 3 3 7 1 77777 7 6 6 111 6 99 6 6 111 8888888888888888888888888 444 88 111 8 0 11 3 99 0 444 11 0 444 0 999 0 0 333 99999999 0 5 11 3 22 0 5 0 1 11 666 3 8 3333 1 1111 8 11 444444444444444444444444444444 0 77777 1 3 88 8 2222 8 22 3 8 8 8 8 8 0 5 444 11 0 8 0 444 5 11 11 8 0 8 666 8 11 111111111111 0 11 0 1 8 8 8 8 5 3 0 2 1 3 0 9 0 0 8 3 888888 8 0 0 8 000 0 444 8 00 0 00 11 8 8 0 0 9 3 6 0 0 3
lowQualScore : . ...... . . ... .. .. . ........ .................. .. . . ......... . ... . ...... .. . . .. ...... . . . . ... . ... . .... . .. . . . . .. ............. . .... .. . . . .......... .. . . . . . . . .. ... . .... . . . ............. ... . ... .. .. . . . . . . . .. . . . . . ..... . . . ... . .. . . ... ......................... ... .. ... . . .. . .. . ... .. . ... . ... . . ... ........ . . .. . .. . . . . .. ... . . .... . .... . .. .............................. . ..... . . .. . .... . .. . . . . . . . . ... .. . . . ... . .. .. . . . ... . .. ............ . .. . . . . . . . . . . . . . . . . . . ...... . . . . ... . ... . .. . .. .. . . . . . . . . . .
lowQualScore : 7 999999 7 7 888 99 99 2 55555555 666666666666666666 99 2 0 888888888 2 888 4 888888 11 4 3 11 333333 4 7 0 2 888 9 333 4 4444 2 44 7 6 7 7 99 6666666666666 7 0000 99 0 0 0 2222222222 99 7 7 4 7 7 7 7 77 777 7 8888 0 3 7 0000000000000 888 8 000 77 22 7 3 0 7 7 7 2 00 7 2 2 3 0 55555 8 7 7 777 7 22 7 7 777 0000000000000000000000000 666 77 000 0 8 00 2 44 8 000 00 8 000 8 444 8 0 222 88888888 0 5 22 2 55 0 0 0 0 88 888 2 0 0000 0 2222 0 00 000000000000000000000000000000 8 88888 4 2 00 0 4444 0 00 8 0 0 0 0 0 8 0 222 00 6 0 0 000 0 00 00 2 8 0 444 0 00 444444444444 8 00 6 0 0 0 0 0 0 2 0 5 0 2 0 8 0 0 8 2 222222 0 8 8 0 000 8 000 0 66 8 55 00 0 0 6 0 2 2 5 0 0 3
consensus : TAT-CGAGG---G--TTGTCC-CA-AAAA---G--TCGTG--GACAATGT--TAATT-AATTTCCAAACTACGA-C-AT-C------GG-TCCA--AAAGA-TA---------TTTTTTACATTAA---TAAC-T------TTA--ACTT-ACAT-CAAA--CAAAA---G--TGT-AAAATTTAAAAACA---AATAT-CATAT-CAAATAAATG-AGC-N-ATTT-TCAG-ATCTAAGGA-GTGCTC--T-A-----------TGAG-CC--G-T--GTTG-GCGC-ACGTAC-AAATA-C-AAA--GTGNACATTTTCT-A-TG-ATCC-ATT-GGGT-TAGATGA--AAGGGATATAGCTTCATAA-TATATATA-TTTGCATTCGAACTT-TATATCAACGGAATCATTTACGC--GTTTT---GCCCTAT-C-ACACTAGG--GTTTTCAAGC-GTAAGA-CGTCANA-AAT-GG-CAGAGAAATGACAGTCATT-TTAAAACGGCTCTGTAAATGAA-TA-TTTTCAATGTAACGGCAACCACGACATTG-TCG---GCGCACA-GAT--AAAT-TATCAAAAT-TTGT---GTAGATCGCTAAACC-A-C-GA-TTATTGATT-CAGATCAGACAAAACGGGAAGCTGGAA-C-G-ACATCA--GATCACAGGAATGTTAGCT-AAATATGACA---TT--GAA---AATATT-TATAAATCATCAGT-ACAATGCCAC-TGCGCATACATCGGCCGCAAATA-GATGTAGAACTCGNGGTTATC-GGACT-TCGACACCCCA-CCTTANTCCCTAGAC-TATA-T-TAGCACCGCTCGGATTTT-GCCTATTTTCTACTT-A-TGANC-G-AGGC-CAGCTTGAGGGGT--AAAC------------G-T-TTG----------CATTT----TGGAGGGA-GGAT-AATA-G-A-GGAGCAGTGAGGAA-ATT-TCAACGTG-TTTCTG-A-ATCAGGCG-TTGGTTT--GAATGT-GTGGTTCGACAAA---TGGCGTG--AAA--CGACAT-GAAAAATGCATCGCGC-ATCGGGGA--CAATGACT---TT-GAAAAAAAAA--CTCTNAT-AACGTCAT-GAC-TT-GTGCGCCGGACAGATAT-GAACATAGGTGNTTGATTTTTGTT-TTATGTTAATATTAAGAGAT-ACA-TTTGATGAAAA-T----TGTACAAAGT-AGTAAAC-AAATGTTNTGCTA---ATAAAT-AGCAAAAGGAAAATTTAAT-CAAC--TTTCTTA-CA-AATAAACGAA-TTATCAAACATTGCCCACGA-CTTTTTGGGA-CAACCCTCGTA-TAT
Reference ( family-302 ) : TAT-CGAGG---G--TTGTCC-CA-AAAA---G--TCGTG--GACAATGT--TAATT-AATTTCCAAACTACGA-C-AT-C------GG-TCCA--AAAGA-TA---------TTTTTTACATTAA---TAAC-T------TTA--ACTT-ACAT-CAAA--CAAAA---G--TGT-AAAATTTAAAAACA---AATAT-CATAT-CAAATAAATG-AGC-N-ATTT-TCAG-ATCTAAGGA-GTGCTC--T-A-----------TGAG-CC--G-T--GTTG-GCGC-ACGTAC-AAATA-C-AAA--GTGNACATTTTCT-A-TG-ATCC-ATT-GGGT-TAGATGA--AAGGGATATAGCTTCATAA-TATATATA-TTTGCATTCGAACTT-TATATCAACGGAATCATTTACGC--GTTTT---GCCCTAT-C-ACACTAGG--GTTTTCAAGC-GTAAGA-CGTCANA-AAT-GG-CAGAGAAATGACAGTCATT-TTAAAACGGCTCTGTAAATGAA-TA-TTTTCAATGTAACGGCAACCACGACATTG-TCG---GCGCACA-GAT--AAAT-TATCAAAAT-TTGT---GTAGATCGCTAAACC-A-C-GA-TTATTGATT-CAGATCAGACAAAACGGGAAGCTGGAA-C-G-ACATCA--GATCACAGGAATGTTAGCT-AAATATGACA---TT--GAA---AATATT-TATAAATCATCAGT-ACAATGCCAC-TGCGCATACATCGGCCGCAAATA-GATGTAGAACTCGNGGTTATC-GGACT-TCGACACCCCA-CCTTANTCCCTAGAC-TATA-T-TAGCACCGCTCGGATTTT-GCCTATTTTCTACTT-A-TGANC-G-AGGC-CAGCTTGAGGGGT--AAAC------------G-T-TTG----------CATTT----TGGAGGGA-GGAT-AATA-G-A-GGAGCAGTGAGGAA-ATT-TCAACGTG-TTTCTG-A-ATCAGGCG-TTGGTTT--GAATGT-GTGGTTCGACAAA---TGGCGTG--AAA--CGACAT-GAAAAATGCATCGCGC-ATCGGGGA--CAATGACT---TT-GAAAAAAAAA--CTCTNAT-AACGTCAT-GAC-TT-GTGCGCCGGACAGATAT-GAACATAGGTGNTTGATTTTTGTT-TTATGTTAATATTAAGAGAT-ACA-TTTGATGAAAA-T----TGTACAAAGT-AGTAAAC-AAATGTTNTGCTA---ATAAAT-AGCAAAAGGAAAATTTAAT-CAAC--TTTCTTA-CA-AATAAACGAA-TTATCAAACATTGCCCACGA-CTTTTTGGGA-CAACCCTCGTA-TAT
gi|1 : TAT-CGAGGT--GATTTGTCC-CA-AAAA---G--TCGTG--GACAA-GT--TCATTTAATTTCCAAACTACGA-C-AT-C------AG-TCCA--AAAAA-TA---------TGTGTTA-AT-AA---TAAC-T------TTA--ACTT-ACATTCAAA--CAAAA---GATTGT-AAA-TTTACAAACA---AAT---CATATTCAAATAAATG-AGA-A-ATTT-TCAG-ATCTAAGGA-GTGCTC--T-A-----------TGAT-CC--A-T--GTTG-G-GC-ACGTAC-AAATA-C-AAA--GTGTACATATTCT-A-TG-ATTC-ATTTGGGT-TAGATGACTAAGGGATATAGCTTCATAAATATATATACTTTGCATTCGAATTTATATATCAACGGAATCATTTACGT--GTGTT---GCCCTAT-C-ACACTAGG--GTTTTCAAGCCGTAAGAGCGTCAAA-AATCGG-CAGAGAAATGACAGTCATC-TTAAAACGGCTCTGTAAATGAA-TA-TTTTCATTGTAACGGCAACCACGACATTG-TCG---GCGCACA-GA---AAACATATCAAAAT-TTGT---GTAGATCGCTAAACC-A-C-GA-TTATTG-TT-CAGATCAGACAAAACGGGAAGCTGGAA-C-G-ACA-CA--GATCACAGGAATGTTAGCT-AAATATGATAATTTT--G-A---AATATT-CATAAATCATCAGT-TCAATGCCAC-TGCGCATACATTGGCTGCAAATA-GATGTAGAACTCGGGGTTATC-GGACT-TCGACACCCCA-CCTTAATCCCTAGAC-TACA-T-TAGCACCGCTCCGATTTT-GCCTATTTTCTACTT-A-TGATC-GCAGGC-CAGTTTGAGGGGT--AAAC------------A-T-TTG----------TATTT----TGAAGGGACGGAT-AATA-G-A-GGAGCAGTAAGGAACATT-TCAACCTG-TTTCTG-A-ATCA-GCGTTTGGTTG--GGATTT-GTGCTTCGACAAA---TGGCGTG--AAA--C-ACATGGAAAAATGGA---CAC-ATGGGGGA--CAATGACT---TTCGAAAAGGAAA--CGCTTAT-AACGTCATGGAC-TTGGTGCGCCGGACAG-TAT-GAACATAGGTGGTTGATTTTTGTT-TTATGTTAATTTTAAGAGAT-ACAGTTTTATGAAAT-G----TGTACAAAGTGAGTAAAC-AAATGTTCTGCTA---ATAAAT-AGCAAAAGGAAAATTTAAT-CAAC--TTTCTTA-CA-AATACACGAATTTATCAAACATTG-TCACGA-CTTTTTGGGA-CAACCTGCGTA-TAT
gi|10 : TTCT---GCC-TAT-C-ACACT-GG--GTTTTCAAGC-GTAAGA-CGTCAAA-AAT-GG-CAGAGAAATGAC-GTCATT-TTAAAACGGCTCTGT-AATGAA-TATTTTTCATTGTAACGGCAACCACGACATTG-TCG---GCGCACA-GAT--AAAT-TATCAAAAT-TTGT---GTAGATCG-TAAACC-ACC-GA-TT-TTGATTCCAGCTCAGACAAAACGGG-AGCTGtt
gi|11 : atgtt-CGAGC---G--TTGTCC-CA-AAAA---A--TCTTT--GGCAATGTTGTAA---AATTTCTAAAATACG--C-AT-C------
gi|11 : AA---TAAC-T------CTA--ACTT-GCAT-CAAA--CAAAT---T--TGT-AAACTTTGAAAG-A---AATTT-CATAA-CAAATAATTG-AAT-T-ATTaaacaaacaaacaacaacaaaaaaaaaacaaaccccaaccccccaaaagaccccccctcccccaaatttggcctgaataactctaacttgcatcaaacaaatttgtaaactttgaaagaaatttcataacaaataattgaattatt
gi|12 : cgagcgttgtcccaaaaaatctttggcaatgttgtaaaatttctaaaatacgcatcaaacaaacaaacaacaacaaaaaaaaaacaaaccccaaccccccaaaagaccccccctcccccaaatttggcctg-CGAGG---G--TTGTCC-CA-AAAA---G--T-----------TTT--AAAAT-AATTTCCAAA--ACAAGC-AT-C------AA--CCA--AAAAA-AAACG------TTTTTGGCATGAA---TAAC-T------CCA--ACTT-ATTT-CAAA--CAAAA---T--TGT-AAACTTT-AAAACA---AATAT-CATAA-CAAAC-AATG-A
gi|13 : aCAGACAAAAC-GGAAGATGGAA-C-GAATATCA--GATCACAGGAATAATAGCA-AAATAAGACA---TT--GAA---AATA-T-TATAatta
gi|14 : --TTTCATAACA-AATAATTGAA-TTATTCAACATTGCCCACAA-CTGTTTGGGA-CAACCCTCGTA-TA
gi|15 : TACAAAGT-AGTAA-C-AAATGTT--GCTA---ATAAAT-AGCAAAAG--AAATTTAAT-ggtat
gi|16 : TATCAA-CATTGCCCACGA-CTTTTTGGTA-CAACCCtca
gi|2 : TAT-CGAGGTCGA--TTGTCC-CATAAAA---GAATCGTGTCGACAA-GTA-TA--T-AATTTCCAACCTACGA-C-ATTC------AG-TCCATAAAAGAATA---------CTTTTTACAT-AA---TAAC-T------TTA--ACTT-ACATTCAAA--CAAAA---AGATGTTAAAATTTAACAACA---AATATGCATATTCAAATAAATG-AGA-AGATTT-TCAGTATCTAAGGAAGTGCTC--T-A-----------TGAT-CC--AAT--GTTGCGCGC-ACGTACCAAATA-C-AAA--GT--ACATATTCT-AATGCATTC-ATT-GGGT-TAGATGACTAAGGGATATAGCTTCATAA-TATATATACTTTGCATT-GAACTT-TATATCAACGGAATT-CTTAC-C--GTTTTTCTGCCCTAT-CCACACT-GG--GTTTTCAAG--GTAAGAGCGACAAA-AAT-GGGCAGAGAAATGACAGTCATTCTTAAAACGGCTCTGTAA-TGA--TA-TTTTCA-TTTAACG-CAAC-ACGACATTGCTCG---G-GCACAAGATTAAAGA-TATCAAAAT-TTGTCTTGTAGATCGCTAAACCCA-CCGACTTATCG----CACATCAGACAAAACGGGA-GCTGGAA-CCG-ACATCA--GAT-ACAGGAAT-TTAGCT-AAAT-TGATA---TTTTGAA---ACTATTATATGAATCATCAGT-ACAATGCCACCTGCGCATACATTG-CTG-AAATA-GATGT-GAACTCCGGGTTATCCGGACTGTCGACACCCCAGCCTTAATCCCTAGACCTACA-T-TAGCACCGCTCG-ATTTT-GCCTATTTTCTACT--A-TGATC-G-AGGC-CAGTTTGAGGGGT--AAAC------------AAT-TTG----------TATTT----TGAAGG-A-GGATGAATA-GCA-GCAGCAGTAAGGAA-ATTCTCAACCTGATTTCTGCATATCAG-CG-T-GCTTTTGGGATGTTGTGACTCGACAAAATACGGCGTG--AAAAACAACAT-GAAAAATG----ACAC-ATCGGGGGACCAATGACT---TT-GAAAAGAA----CGCTTAT-AACGTCAT-GAC-TT-GGTCGCCGGACAGATAT-GAACATAGGTGGTTGATTTTTGTT-TTATGTTAAT-TTAAGAGAT-ACA-TTT-ATG-AAA-T----TGTACAAAGT-AGTAAAC-AAATGTTCTGCTA---ATAAAT-AGCAAAA-GAAAATTTAAT-CAAC--TTTCTTA-CA-AATACACGAA-
gi|3 : gcataTATACGAGG---G--TTCTCC----AAAA---G--TCGTG--GACAATGT--TAAT--AATT-CCAAACTAC-A-C-A---------GA-TCCA--AAAGA-TA----------TTTTTACATTAA---TAACTT------TTA--ACTT-ACAT-CAAA--CAAAA---G--TGT-AAAATTTAAAAACA---AATAT-CAT----AAATAAATG-AGC-T-A-TT-TCAG-AT---AAGA-GTGCTC--TAA-----------TGAG-CC--G-T--GTTG-GCGC-ACGTAC-AAAT-----AA--GTGTACATTTTCT-A-TG-ATCC-ATT-GGTT-TAAATGA--AAGGATTATAGCTTAATAA-TATATA-----TGCATT-GAACTT-TAT-TCAACGAAG--A-TTATAT--GTTTT---GTCTAAT-T-ATACT-GG--ATTTTCAAGC-GCAAGA-CGTCATA-AAT-GG-CAGAGAAATGAC-GTCATT-TTAAAACGGATCTG--AATAA---G-TTTTCAATGTAACGGCAACCACG-CGTCG-TCG---GCGCACA-GAT---AAT-TA-CAAAGTGTTGT---GTAGAT-------CC-G-T-GG-TTG--GATT-C--ATTAGACAAAACGGG-CGCT-GAA-C-G-ACATCAAGAATCACAAGAAT-TTA-CTAAAATATGACA---TT--GAA---AA------ATAAATCATCAGTAACAATGCC-C-TGCACGTACA-----CGTGAATACGATGT-GAACTCGTGG-TATC--GACT-TCGACA-CCCA-CCTTATTCCCTACCT-TATA---TAGCACGCCTCGGATTTG-GCCTATTTTCTAATT-ACNNNNN-N-NNNN-NNNNNNNNNNNNN--NNACTTAAGAAGGCCAG-C-TTGAGGGGGCAAACATTTGATTTGGAAGGA--GAT-AATA-G-A-GGAGCAGTGAGG-A-ATT-TCAACGTG-TTTCTG-A-ATCAGGCG--TGGTTT--GAAGAT-GT-GTTTGACAAA---TGG-GTG--AAA--CTAC-----AAAACGCATCGCGC-AGCGGGGA--CAAT-ACTAAAAT-G-AAAAAGAA--CTCTAAT-AACGTCAT-GAC-TT-GTGCGCC-AACAGATAT-GAACATAGGTGTTTGATTTTTGTT-TTATGTTAATATTAAGAGAT-ACATTTTGATGAAAATT----TGTACAGAGT-AGT--ACTAAATG--ATGCTAATTATAAAT-AGCAAAAG--AAATTTAATACAAT--TTTCTTA-CA-AATAAACGA
gi|4 : caA---G--TCGTG--GACAATGT--TAAT--AATTTCCAAACTACG--C-AT-C------AGATCCA--AAA-A-TA---------TTTTTTACATTAA---TAAC-T------TTA--GCTT-ACAT-CAAA--CAAAA---G--TGT-AAAATCTAAAA-CA---AATAT-CATAA-CAAATAAATG-AGC-G-ATTT-AC----TCTA---------TC--T----------------G-CC--A-T--GTTG-GAGC-ACGCAC-AAATGTC-A----TTAAACATTTTCT-A-TA-ATCC-ACT-GGGA-TAGATGA--AAGA-ATATAGCTTCATGA-TAGATAT--TTTGCATTCAAA-TT-CATATCAACGGAATC-TGTG-GT--GTTTTCT-GCCTAAT---ACAC-AAG--GTTTTTAAGC-GTATGA-CGTCATA-AAT-GG-TAGAG-----ACA---------------------TAAAT--A-GA-TTT--AATGTAACGGTAACCAAGACATTG-TCA---GCGCACA-GAT--AAAT-TATCAAATT-TTGT---GTAGATCG----------T-GG-TT-TTACTC-CAACTCAGACAAAACGGG-AGATGGAAGG-G-ACATCA--GATCACAGAAATGTTAGCA-TACCATGACA---TT--GAACATAATATT-T----ATCATCATT-ACAATGCCCT-TGCGCACACATCGGCCA-AAATA-GATCTAGAACTCATGGTCATC-GGACT-TTGACA-CCCA-CCTTGCTCCCTAGAC--ATATT-TAGCACGGCTCAATTTTT-GCCTATTTTCTACTT-T-TGAAC-----GC-CAGCTTAAGGGGC--AAAC------------G-T-TTG-----------A-TT----TGGATGGA--GAT-ATTT-T-A-GGAGCAGTG-GGGA-ATT-TCAACGTG-TCTCTG-A-ATCAGGCG--TGGTTT--GAATGT-GT-GTTTGACTAA---TGG-GCG--AAA--CGGCAT-GGAAAATGCATCGCGC-TTCGGGGA--CAAT-ACT---T----AAAAAAAACCCTCTGAT-AACGTCAT-GAT-TT-
gi|5 : C-CATA-TATAGCACCGCTCG-ATTTTAGCCTATTTCATACTTCA-TGAAAAG-TGGCGCAGCTTGAGCGGTGCAAAC------------A-TATTG----------CATTT---------GGA-GAAT-AATTTG-ATGGAGCAGTT--GAA-ATT-T-AACGTG-TCTCCT-A-A-CACG-G-TGGGTTT--GAAGGC--TGGTTTGACAAA---TGAGGTGGAAAA--CGACAT-GAAAAATGCATCGCGCAATCGGGGA--AAAT-AC----TT-GAAAAAAAAA--CTCTGATAAACGTCAT-GACTTT-GTGCGCC-GACAGATATAGGACATA-GTCTTTAA-TTTTGTTATTCTGTTAATATTAAGAGATAACA-TTTGATGAAAA-TTCAGTGTACAAATT-AGTAAAC-AAATG--ATGC-A---AAAAATCAG-AAAAGGAAAG-TTAAT---ACTATTTCTTA-CAGAATAAATGAA-TTATCAACCA-TGTCCACGAGCTTTTTGGGAGCAACCCTCGTAGTAT
gi|6 : -CGAGG---G--TTGTCC-CA-AAAA---G--TCGTG--GACAATGT--TAAT--AATTTCCAAACTAC-A-C-A---------GA-TCCA--AAAGA-TA---------TTTT-TACATTAA---TAAC-T------TTA--ACTT-ACAT-CAAA--CAAAA---G--TGT-AAAATTTAAAAACA---AATAT-CATAT--AAATAAATG-AGC-T-A-TT-TCAG-AT---AAGA-GTGCTC--TAA-----------TGAG-CC--G-T--GTTG-GCGC-ACGTAC-AAA-----AAA--GTGTACATTTT-T-A-TG-ATCCAATT-GGTT-TAAATGA--AA-GGATATAGCTTAATAA-TATATATA--TTGCATT-GAACTT-TATATCg
gi|7 : -CGAGG---G--T-GTCCACA-AAAAAAAG--TCGTG--GACCATGTG-TAAT--AATTTTC---CTAAGA-TGAT-CTGCTCAGA-TCCT--AATGA-TACTTACTTTATTTCTCACATTAGATTTAAT-TCACACATTAGAACTTGACAGGCAAATGCAAAATAAG--TGT-AAATTTTTAAAGCAGGTAATATGCATAT-GAATTAAATGAAGCAT-ATTTATCAG-AT-TAAG---GTGGTC--T-ACTCATCAGAATTGAGACCAAA-TAAGTTGCGCGCGACGTAC-AGATA-CTAGG--GTGAACATTTTtggttattctctgctacaatgttttc
gi|8 : ta--GTTG-GCGC-AC-TAC-AAATA---AGGTCGTGAACATTTTCTGA-TGGATCC-ATT-GGGGGTA-ATGA--AAG--ATTTAACTTCATAA-TAAA---A-TC-GCATTCAAA--T-TATATCAACGGA--CATCTATGCATGTTTT----CTGTATGT-ATACGAGGTCGTTT-CAAGC-GTAAGA-CGTCATGTAAT-G--CAGGGAA-TGAC--TCATT-TTAAA-CGTCTCTGTAA-TGAAGTT-TTCTCAATG-AACG-CAACCACGACCTTG-TTGTACGCGCACA-GAT--AAAT-TATC--AAT-TTGT---GTAGATgccgatatattgattactaaat
gi|9 : cT-AATTTCCAAACTACG--C-AT-C------AGATCCA--AAAGA-T----------TTTTTTACATTAA---TAAC-T------TTA--ACTT-ACAT-CAAA--CAAAA---G--TGT-AAAATTTAAAA-CA---AATAT-CATAT-CAAATACATG-AGA-A-ATTT--CAG-AT-TAAGGA-GTGCTCAGT-A-----------TGAG-CC--A-T--GTTG-GCGC-ACGTAC-AA------------------TTTTCT-A-TG-ATTC-ATC-GGGT-TAGATGA--AA-GGATATAGCTTCATAA-tcgtgt
blockSeqs : A TCGA A T AAA AA TC T TGTAA GATGATCTGCTCAGA TA A CTTACTTTA G ATT T CACACA GA G T TG TAAG T C G G GGT G TTC A AAG T AT T C A AG ACTCATCAGAAT A AAA AA C G C TACTAGG GT G A C A . G G CT GGG . TACT C C . CATCTATGCAT TCT C CC GA TC . G A T . G A AG C A A A G ATAT T G C TAC A TA . G CTT TAAACCACCGATTTTGATTC AGC AA CC A AG A TA . TT CAT TTA A ACC TCGGCCA C A CG T CG G C G A CT TT G A TAC T AGT G GC TTAAGAAGGCCAGCTTGAGGGGGCAAAC GATTT A G G G AGC T AA A . C A C T G TG TG T G ATA C GA AA A . CAT A AC ACTAAAATG CC T A . T . G A A G G T A A A T G A TTCAG . T TTC ATT C GA AC TA A G . A T C G G G
blockSeqs : . G . . . . . T AAAAT AAGCATCAA . . ACG T . . . . . G . AGA . C A A . G AC . CAT T T . C . . AA . AA . C . . TAAGGTC AA . . G . . . A . GGA . TT C C . ATTCTTACC CT T GT T . . . A . . . A G . A A A G AGTT A G . . . . . . . CTAAACCCACCGACTTATCG ACA A GG . . G A . . . TT . CT TTGCTG . . GT T G . . . T T TA A . TCA N GA . . AATTTGT T G A G . TTG . GA G . . . . . G T . . G . G . . T . CAT . . GACTTTGA . A . . . . . A . G T T . A . . G A TT . . TT . . GA C . . . . C T C . . .
blockSeqs : . G . . . . . T GTAAT GACATTCAG . . . T . . . . . . . T . A A A . . AC . TT T T . . . . AA . G . . . . TACAAA GT . . . . . . G . GA . TA . C . ATCTGTGGT . T C T . . . T . . . A G . A A A A AGA A G . . . . . . . CCGTGGTTGGATT AAC A C . . . T . . . T . C CGT . . AT . . . . . C C T . . TT A NN . . ATATTGC T G T . . AG . G A . . . . . G T . . . . . . . G . CAT . . ACTTGA . G . . . . . A . . T . . . . . . . T . . A . . . . . . . . . . T . .
blockSeqs : . G . . . . . T ATAT GCATCAGA . . . T . . . . . . . T . A A A . . AC . CT T A . . . . A . A . . . . TGTCA GA . . . . . . A . GG . AT . . . GATTATAT . G T T . . . T . . . . A . . . . G TA A . . . . . . . . TGGTTTTACTC A C C . . . A . . . . . . . . A A . . . GTTTG . . . . . TT . T . . . . . . C T . . . . . . . G . . . . ACTT . G . . . . . . A . . . . . .
blockSeqs : . G . . . . . T TAAT GCATCAGA . . . T . . . . . . . G . A A A . . TG . CG T T . . . . A . G . . . . TAA GA . . . . . . G . GG . . . . . . . . A . . . T . . . . . . . . . . G . . . . . . . . . A
blockSeqs : . G . . . . . T TAAT ACAGA . . . T . . . . . . . G . A T G . . TC . CT . . . . . . . . A . . . . AAA . . . . . . . . . G .
blockSeqs : . . . . TAAT ACAGA . . . . . . . . . . . G . T A . . . T . AA . . . . . . .
blockSeqs : . . . . . . . G . A . . . . . .
blockSeqCons : G***** TAAT**** GCATCAGA********** G***** AC* AA*********** TACA****** ** GG* TT** GATCTGTGGT*** T* G* AGA** TCCGCGGCTTATT************ A* C** *** T** *** T*** G*** NTTTGC************************ ** TG** T** CAT ACTTG******* TN*
originalCons : TAT-CGAGG---G--TTGTCC-CA-AAAA---G--TCGTG--GACAATGT--TAATT-AATTTCCAAACTACGA-C-AT-C------GG-TCCA--AAAGA-TA---------TTTTTTACATTAA---TAAC-T------TTA--ACTT-ACAT-CAAA--CAAAA---G--TGT-AAAATTTAAAAACA---AATAT-CATAT-CAAATAAATG-AGC-N-ATTT-TCAG-ATCTAAGGA-GTGCTC--T-A-----------TGAG-CC--G-T--GTTG-GCGC-ACGTAC-AAATA-C-AAA--GTGNACATTTTCT-A-TG-ATCC-ATT-GGGT-TAGATGA--AAGGGATATAGCTTCATAA-TATATATA-TTTGCATTCGAACTT-TATATCAACGGAATCATTTACGC--GTTTT---GCCCTAT-C-ACACTAGG--GTTTTCAAGC-GTAAGA-CGTCANA-AAT-GG-CAGAGAAATGACAGTCATT-TTAAAACGGCTCTGTAAATGAA-TA-TTTTCAATGTAACGGCAACCACGACATTG-TCG---GCGCACA-GAT--AAAT-TATCAAAAT-TTGT---GTAGATCGCTAAACC-A-C-GA-TTATTGATT-CAGATCAGACAAAACGGGAAGCTGGAA-C-G-ACATCA--GATCACAGGAATGTTAGCT-AAATATGACA---TT--GAA---AATATT-TATAAATCATCAGT-ACAATGCCAC-TGCGCATACATCGGCCGCAAATA-GATGTAGAACTCGNGGTTATC-GGACT-TCGACACCCCA-CCTTANTCCCTAGAC-TATA-T-TAGCACCGCTCGGATTTT-GCCTATTTTCTACTT-A-TGANC-G-AGGC-CAGCTTGAGGGGT--AAAC------------G-T-TTG----------CATTT----TGGAGGGA-GGAT-AATA-G-A-GGAGCAGTGAGGAA-ATT-TCAACGTG-TTTCTG-A-ATCAGGCG-TTGGTTT--GAATGT-GTGGTTCGACAAA---TGGCGTG--AAA--CGACAT-GAAAAATGCATCGCGC-ATCGGGGA--CAATGACT---TT-GAAAAAAAAA--CTCTNAT-AACGTCAT-GAC-TT-GTGCGCCGGACAGATAT-GAACATAGGTGNTTGATTTTTGTT-TTATGTTAATATTAAGAGAT-ACA-TTTGATGAAAA-T----TGTACAAAGT-AGTAAAC-AAATGTTNTGCTA---ATAAAT-AGCAAAAGGAAAATTTAAT-CAAC--TTTCTTA-CA-AATAAACGAA-TTATCAAACATTGCCCACGA-CTTTTTGGGA-CAACCCTCGTA-TAT
finalCons : TAT-CGAGGG-----TTGTCC-CA-AAAA---G--TCGTG--GACAATGTTAAT----AATTTCCAAACTACGCATCAGA----------TCCA--AAAGA-TA---------TTTTTTACATTAA---TAAC-T------TTA--ACTT-ACAT-CAAA--CAAAAG-----TGT-AAAATTTAAAAACA---AATAT-CATAAC-AAATAAATG-AGC-N-ATTT-TCAG-ATCTAAGGA-GTGCTC--TAA-----------TGAG-CC--G-T--GTTG-GCGC-ACGTAC-AAATACA------GTGNACATTTTCT-A-TG-ATCC-ATT-GGGT-TAGATGA--AAGG-ATATAGCTTCATAA-TATATATT--TTGCATTCGAACTT-TATATCAACGGAGATCTGTGGT---GTTTT---GCCCTAT-C-ACACT-GG--GTTTTCAAGC-GTAAGA-CGTCANA-AAT-GG-CAGAGAAATGACG-TCATT-TTAAAACGGCTCTGTAAATGAAGA--TTTTCAATGTAACGGCAACCACGACATTG-TCG---GCGCACA-GAT--AAAT-TATCAAAAT-TTGT---GTAGATCGTCCGCGGCTTATT------------CAGATCAGACAAAACGGGA-GCTGGAAC--G-ACATCA--GATCACAGGAATGTTAGCT-AAATATGACA---TT--GAA---AATAT--TATAAATCATCAGT-ACAATGCCAC-TGCGCATACATCGGCCGCAAATA-GATGTAGAACTCGNGGTTATC-GGACT-TCGACACCCCA-CCTTANTCCCTAGAC-TATA---TAGCACCGCTCGGATTTT-GCCTATTTTCTACTT---TGANCG---GGC-CAGCTTGAGGGGT--AAACNTTTGC------------------------ATTT----TGGAGGGA--GAT-AATTG--A-GGAGCAGTGAGGAA-ATT-TCAACGTG-TTTCTG-A-ATCAGGCGT--GGTTT--GAATGT-GTGGTTCGACAAA---TGGCGTG--AAA--CGACAT-GAAAAATGCATCGCGC-ATCGGGGA--CAATACTTG-------AAAAAAAA--CTCTNAT-AACGTCAT-GAC-TT-GTGCGCCGGACAGATAT-GAACATAGGTGNTTGATTTTTGTT-TTATGTTAATATTAAGAGAT-ACA-TTTGATGAAAA-T----TGTACAAAGT-AGTAAAC-AAATGTN-TGCTA---ATAAAT-AGCAAAAGGAAAATTTAAT-CAAC--TTTCTTA-CA-AATAAACGAA-TTATCAAACATTGCCCACGA-CTTTTTGGGA-CAACCCTCGTA-TAT
Alignments
lowQualScore : 111111 11 111111 222222222 111111 1 111111 111 1111 11 1 111 333333333 1111 1 33333333333 1 222 111 1111 1 22222222222 222 111 1 11 111111 111 111 77777777777777777777777777 111 11 1 111 11 11 1 111 11111111 1 1 11 1 1 1 1 11 44444444444 11 33333333 22222 3333333 444444444444 11 111 11 1 111 1 11 11 11 1 222222222 1 1 1 1 2 222222 333 111 11 11 11 1 1 1 1
lowQualScore : 5 555555 5 5 888 66 66 9 11 66 4 222222 8 66 7 66 0 5 888888888 2 6 777 222222 4 66 4 3 66 777777 4 4 1 5 777 8 111 4 2222 44 5 8 5 000 333333333 5 5555 66 0 5 5 0 55555555555 2 5 5 1 5 5 5 1 000 5 000 8888 5 9 6 44444444444 000 7 777 6 99 6 3 1 6 6 6 3 55 88 3 66 7 333333 6 7 6 6 111 6 99 6 6 111 6 88888888888888888888888888 444 6 111 8 0 11 3 99 0 444 11 66 1 8 11 0 333 99999999 0 5 11 3 22 0 5 0 1 6 8 8 11 8 8 44444444444 8 11 99 8 22222222 00000 8 99 1 4444444 8 111111111111 22 3 8 8 8 8 8 0 8 111 11 0 8 0 444 5 11 11 8 0 8 666 8 11 6 555555555 8 8 0 1 8 8 8 8 5 3 0 2 1 3 0 9 0 0 8 3 888888 8 0 0 8 555 0 444 8 00 0 00 11 8 8 0 0 9 3 6 0 0 3
lowQualScore : . ...... . . ... .. .. . .. .. . ...... . .. . .. . . ......... . . ... ...... . .. . . .. ...... . . . . ... . ... . .... .. . . . ... ......... . .... .. . . . . ........... . . . . . . . . ... . ... .... . . . ........... ... . ... . .. . . . . . . . .. .. . .. . ...... . . . . ... . .. . . ... . .......................... ... . ... . . .. . .. . ... .. .. . . .. . ... ........ . . .. . .. . . . . . . . .. . . ........... . .. .. . ........ ..... . .. . ....... . ............ .. . . . . . . . . ... .. . . . ... . .. .. . . . ... . .. . ......... . . . . . . . . . . . . . . . . . . . . ...... . . . . ... . ... . .. . .. .. . . . . . . . . . .
lowQualScore : 7 999999 7 7 888 99 99 4 99 11 4 888888 9 33 3 11 2 0 888888888 0 2 888 888888 4 11 4 3 11 333333 4 7 0 2 888 9 666 4 4444 44 7 6 7 000 777777777 7 0000 99 0 0 0 1 88888888888 8 7 7 4 7 7 7 7 000 7 000 3333 0 3 7 99999999999 888 8 000 7 22 7 3 0 7 7 7 2 88 33 2 33 3 555555 7 8 7 7 777 7 22 7 7 777 7 11111111111111111111111111 666 7 000 0 8 00 2 44 8 000 00 44 0 0 00 0 222 88888888 0 5 22 2 55 0 0 0 0 0 0 0 44 0 0 88888888888 0 00 00 0 88888888 88888 0 44 4 0000000 0 000000000000 00 8 0 0 0 0 0 8 0 888 00 6 0 0 000 0 00 00 2 8 0 444 0 00 0 222222222 0 0 6 0 0 0 0 0 0 2 0 5 0 2 0 8 0 0 8 2 222222 0 8 8 0 444 8 000 0 66 8 55 00 0 0 6 0 2 2 5 0 0 3
consensus : TAT-CGAGG---G--TTGTCC-CA-AAAA---G--TCGTG--GACAATGT--TAAT--AATTT-CCAAA------CTACG-CAT-CAGATCCA--AAAGA-TA---------TTTTTTACATTAA---TAACT------TT-A--ACTT-ACAT-CAAA--CAAAA---G--TGT-AAAATTTAAAAACA---AATAT-CATAN-CAAATAAATG-AGC-N-ATTT-TCAG-ATCTAAGGA-G---TGCTC--T---AA-TGAG-CC--G-T--GTTG-GCGC-ACGTAC-AAATA----C---A--GTGNACATTTTCT-A-TG-ATCC-ATT-GGGT-TAGATGA---AAGGAT-ATAGCTTCATAA---TATATAT--TTTGCATTCGAACTT-TATATCAACGGA-ATC-TATA-GTGTTTT---GCCCTAT-C-ACACT-GGGT--TTTCAAGC-GTAAGA-CGTCANA-AAT-GG-CAGAGAAATGAC-GTCATT-TTAAAACGGCTCTGTAAATGAANA-TTT-TCAATGTAACGGCAACCACGACATTG-TCG---GCGCACA-GAT--AAAT-TATCAAAAT-TTGT---GTAGA-TCGT-AA--CCAC-GG-TT--T---A-TT-CAGATCAGACAAAACGGGA-GCTGGAA-C-GA-CATCA--GATCACAGGAATGTTAGCT-AAATATGACA---TT--GAAAATATT-ATA--AATCATCAGT-ACAATGCCAC-TGCGCATACATCGGCCGCAAATA-GATGTAGAACTCGNGGTTATC-GGACT-TCGACACCCCA-CCTTANTCCCTAGAC-TATA-T-AGCACCGCTCGGATTTT-GCCTATTTTCTAC-TTA--TGANCG--GGC-CAGCTTGAGGGGT--AAACA-T-TTG-----CATTTTGAAGGG--A--GAT-AA-TTG-------A-GGAG------------CAGTGAGGAA-ATT-TCAACGTG-TTTCTG-A-ATCA-GGCG--TGGTTT--GAATGT-GTGGTTCGACAAA---TGGCGTG--AAA--CGACAT-GAAAAATGCATCGCGC-ATCGGGGA--CAATGACT----T--G-AAAA-AAA-ACTCTNAT-AACGTCAT-GAC-TT-GTGCGCCGGACAGATAT-GAACATAGGTGNTTGATTTTTGTT-TTATGTTAATATTAAGAGAT-ACA-TTTGATGAAAA-T----TGTACAAAGT-AGTAAAC-AAATGTTNTGCTA---ATAAAT-AGCAAAAGGAAAATTTAAT-CAAC--TTTCTTA-CA-AATAAACGAA-TTATCAAACATTGCCCACGA-CTTTTTGGGA-CAACCCTCGTA-TAT
Reference ( family-302 ) : TAT-CGAGG---G--TTGTCC-CA-AAAA---G--TCGTG--GACAATGT--TAAT--AATTT-CCAAA------CTACG-CAT-CAGATCCA--AAAGA-TA---------TTTTTTACATTAA---TAACT------TT-A--ACTT-ACAT-CAAA--CAAAA---G--TGT-AAAATTTAAAAACA---AATAT-CATAA-CAAATAAATG-AGC-N-ATTT-TCAG-ATCTAAGGA-G---TGCTC--T---AA-TGAG-CC--G-T--GTTG-GCGC-ACGTAC-AAATA----C---A--GTGNACATTTTCT-A-TG-ATCC-ATT-GGGT-TAGATGA---AAGGAT-ATAGCTTCATAA---TATATAT--TTTGCATTCGAACTT-TATATCAACGGAGATC-TGTG-GTGTTTT---GCCCTAT-C-ACACT-GGGT--TTTCAAGC-GTAAGA-CGTCANA-AAT-GG-CAGAGAAATGAC-GTCATT-TTAAAACGGCTCTGTAAATGAAGA-TTT-TCAATGTAACGGCAACCACGACATTG-TCG---GCGCACA-GAT--AAAT-TATCAAAAT-TTGT---GTAGA-TCGT-----CCGC-GG-CT--T---A-TT-CAGATCAGACAAAACGGGA-GCTGGAA-C-GA-CATCA--GATCACAGGAATGTTAGCT-AAATATGACA---TT--GAAAATATT-ATA--AATCATCAGT-ACAATGCCAC-TGCGCATACATCGGCCGCAAATA-GATGTAGAACTCGNGGTTATC-GGACT-TCGACACCCCA-CCTTANTCCCTAGAC-TATA-T-AGCACCGCTCGGATTTT-GCCTATTTTCTAC-TT---TGANCG--GGC-CAGCTTGAGGGGT--AAACN-T-TTG-----CATTTTGGAGGG--A--GAT-AA-TTG-------A-GGAG------------CAGTGAGGAA-ATT-TCAACGTG-TTTCTG-A-ATCA-GGCG--TGGTTT--GAATGT-GTGGTTCGACAAA---TGGCGTG--AAA--CGACAT-GAAAAATGCATCGCGC-ATCGGGGA--CAAT-ACT----T--G-AAAA-AAA-ACTCTNAT-AACGTCAT-GAC-TT-GTGCGCCGGACAGATAT-GAACATAGGTGNTTGATTTTTGTT-TTATGTTAATATTAAGAGAT-ACA-TTTGATGAAAA-T----TGTACAAAGT-AGTAAAC-AAATG-TNTGCTA---ATAAAT-AGCAAAAGGAAAATTTAAT-CAAC--TTTCTTA-CA-AATAAACGAA-TTATCAAACATTGCCCACGA-CTTTTTGGGA-CAACCCTCGTA-TAT
gi|1 : TAT-CGAGGT--GATTTGTCC-CA-AAAA---G--TCGTG--GACAA-GT--TCATTTAATTT-CCAAA------CTACGACAT-CAG-TCCA--AAAAA-TA---------TGTGTTA-AT-AA---TAACT------TT-A--ACTT-ACATTCAAA--CAAAA---GATTGT-AAA-TTTACAAACA---AAT---CATATTCAAATAAATG-AGA-A-ATTT-TCAG-ATCTAAGGA-G---TGCTC--T---A--TGAT-CC--A-T--GTTG-G-GC-ACGTAC-AAATA----C---AAAGTGTACATATTCT-A-TG-ATTC-ATTTGGGT-TAGATGACTAAGGGAT-ATAGCTTCATAAATATATATAC--TTTGCATTCGAATTTATATATCAACGGA-ATCATTTACGTGTGTT---GCCCTAT-C-ACACTAGGGT--TTTCAAGCCGTAAGAGCGTCAAA-AATCGG-CAGAGAAATGACAGTCATC-TTAAAACGGCTCTGTAAATGAATA-TTT-TCATTGTAACGGCAACCACGACATTG-TCG---GCGCACA-GA---AAACATATCAAAAT-TTGT---GTAGA-TCGCTAAA-CCAC-GA-TTATT---G-TT-CAGATCAGACAAAACGGGAAGCTGGAA-C-GA-CA-CA--GATCACAGGAATGTTAGCT-AAATATGATAATTTT--GAAA-TATTCATA--AATCATCAGT-TCAATGCCAC-TGCGCATACATTGGCTGCAAATA-GATGTAGAACTCGGGGTTATC-GGACT-TCGACACCCCA-CCTTAATCCCTAGAC-TACATT-AGCACCGCTCCGATTTT-GCCTATTTTCTAC-TTA--TGATCGCAGGC-CAGTTTGAGGGGT--AAACA-T-TTG-----TATTTTGAAGGG--ACGGAT-AA-TAG-------A-GGAG------------CAGTAAGGAACATT-TCAACCTG-TTTCTG-A-ATCA--GCGTTTGGTTG--GGATTT-GTGCTTCGACAAA---TGGCGTG--AAA--C-ACATGGAAAAATGGA---CAC-ATGGGGGA--CAATGACT----TTCG-AAAAGGAA-ACGCTTAT-AACGTCATGGAC-TTGGTGCGCCGGACAG-TAT-GAACATAGGTGGTTGATTTTTGTT-TTATGTTAATTTTAAGAGAT-ACAGTTTTATGAAAT-G----TGTACAAAGTGAGTAAAC-AAATGTTCTGCTA---ATAAAT-AGCAAAAGGAAAATTTAAT-CAAC--TTTCTTA-CA-AATACACGAATTTATCAAACATTG-TCACGA-CTTTTTGGGA-CAACCTGCGTA-TAT
gi|10 : -GTTTTCT---GCC-TAT-C-ACACT-GGGT--TTTCAAGC-GTAAGA-CGTCAAA-AAT-GG-CAGAGAAATGAC-GTCATT-TTAAAACGGCTCTGT-AATGAATATTTT-TCATTGTAACGGCAACCACGACATTG-TCG---GCGCACA-GAT--AAAT-TATCAAAAT-TTGT---GTAGA-TCGTAAA--CCAC-CG-AT--TTTGA-TTCCAGCTCAGACAAAACGGGA-GCTGtt
gi|11 : at-CGAGC---G--TTGTCC-CA-AAAA---A--TCTTT--GGCAATGTTGTAA---AATTT-CTAAA------ATACG-CAT-CAAA--CA--AA
gi|11 : AA---TAACT------CT-A--ACTT-GCAT-CAAA--CAAAT---T--TGT-AAACTTTGAAAG-A---AATTT-CATAA-CAAATAATTG-AAT-T-ATTcaaacaacaacaaaaaaaaaacaaaccccaaccccccaaaagaccccccctcccccaaatttggcctgaataactctaacttgcatcaaacaaatttgtaaactttgaaagaaatttcataacaaataattgaattatt
gi|12 : cgagcgttgtcccaaaaaatctttggcaatgttgtaaaatttctaaaatacgcatcaaacaaacaaacaacaacaaaaaaaaaacaaaccccaaccccccaaaagaccccccctcccccaaatttggcctg-CGAGG---G--TTGTCC-CA-AAAA---G--TTTT------AA------AAT--AATTT-CCAAA------ACAAG-CAT-CAA--CCA--AAAAA-AAACG------TTTTTGGCATGAA---TAACT------CC-A--ACTT-ATTT-CAAA--CAAAA---T--TGT-AAACTTT-AAAACA---AATAT-CATAA-CAAAC-AATG-A
gi|13 : aCAGACAAAACGGAA-GATGGAA-C-GAATATCA--GATCACAGGAATAATAGCA-AAATAAGACA---TT--GAAAATATT-ATA--atta
gi|14 : --TTTCATAACA-AATAATTGAA-TTATTCAACATTGCCCACAA-CTGTTTGGGA-CAACCCTCGTA-TA
gi|15 : TACAAAGT-AGTAA-C-AAATG-T-TGCTA---ATAAAT-AGCAAAAG--AAATTTAAT-ggtat
gi|16 : TATCAA-CATTGCCCACGA-CTTTTTGGTA-CAACCCtca
gi|2 : TAT-CGAGGTCGA--TTGTCC-CATAAAA---GAATCGTGTCGACAA-GT--ATAT--AATTT-CCAAC------CTACGACATTCAG-TCCATAAAAGAATA---------CTTTTTACAT-AA---TAACT------TT-A--ACTT-ACATTCAAA--CAAAA---AGATGTTAAAATTTAACAACA---AATATGCATATTCAAATAAATG-AGA-AGATTT-TCAGTATCTAAGGAAG---TGCTC--T---A--TGAT-CC--AAT--GTTGCGCGC-ACGTACCAAATA----C---A--AAGTACATATTCT-AATGCATTC-ATT-GGGT-TAGATGACTAAGGGAT-ATAGCTTCATAA---TATATATACTTTGCATT-GAACTT-TATATCAACGGAATTC-T-TA-CCGTTTTTCTGCCCTAT-CCACACT-GGGT--TTTCAAG--GTAAGAGCGACAAA-AAT-GGGCAGAGAAATGACAGTCATTCTTAAAACGGCTCTGTAA-TGA-TA-TTT-TCA-TTTAACG-CAAC-ACGACATTGCTCG---G-GCACAAGATTAAAGA-TATCAAAAT-TTGTCTTGTAGA-TCGCTAAACCCACCGA-CT--T---A-TCGCACATCAGACAAAACGGGA-GCTGGAA-CCGA-CATCA--GAT-ACAGGAAT-TTAGCT-AAAT-TGATA---TTTTGAAACTATT-ATATGAATCATCAGT-ACAATGCCACCTGCGCATACATTG-CTG-AAATA-GATGT-GAACTCCGGGTTATCCGGACTGTCGACACCCCAGCCTTAATCCCTAGACCTACA-TTAGCACCGCTCG-ATTTT-GCCTATTTTCTAC-TA---TGATCGA-GGC-CAGTTTGAGGGGT--AAACAAT-TTG-----TATTTTGAAGGA--G--GATGAA-TAGC------A-GCAG------------CAGTAAGGAA-ATTCTCAACCTGATTTCTGCATATCA-G-CG--TGCTTTTGGGATGTTGTGACTCGACAAAATACGGCGTG--AAAAACAACAT-GAAAAATG----ACAC-ATCGGGGGACCAATGACT----T--T-GAAA-AGA-ACGCTTAT-AACGTCAT-GAC-TT-GGTCGCCGGACAGATAT-GAACATAGGTGGTTGATTTTTGTT-TTATGTTAAT-TTAAGAGAT-ACA-TTT-ATG-AAA-T----TGTACAAAGT-AGTAAAC-AAATGTTCTGCTA---ATAAAT-AGCAAAA-GAAAATTTAAT-CAAC--TTTCTTA-CA-AATACACGAA-
gi|3 : gcataTATACGAGG---G--TTCTCC----AAAA---G--TCGTG--GACAATGT--TAAT--AATT--CCAAA------CTACA-CA----GATCCA--AAAGA-TA---------TTTTT-ACATTAA---TAACT------TTTA--ACTT-ACAT-CAAA--CAAAA---G--TGT-AAAATTTAAAAACA---AATAT-CATAA----ATAAATG-AGC-T-ATTT--CAG-AT---AAGA-G---TGCTC--T---AA-TGAG-CC--G-T--GTTG-GCGC-ACGTAC-AAATA--------A--GTGTACATTTTCT-A-TG-ATCC-ATT-GGTT-TAAATGA---AAGGATTATAGCTTAATAA---TATATAT-----GCATT-GAACTT-TAT-TCAACGAAGAT--TATA--TGTTTT---GTCTAAT-T-ATACT-GGAT--TTTCAAGC-GCAAGA-CGTCATA-AAT-GG-CAGAGAAATGAC-GTCATT-TTAAAACGGATCTG--AAT-AAG--TTT-TCAATGTAACGGCAACCACG-CGTCG-TCG---GCGCACA-GAT---AAT-TA-CAAAGTGTTGT---GTAGA----T-----CCGT-GG-TTG-G---A-TT-C--ATTAGACAAAACGGGC-GCT-GAA-C-GA-CATCAAGAATCACAAGAAT-TTA-CTAAAATATGACA---TT--GAAAA-----ATA--AATCATCAGTAACAATGCC-C-TGCACGTACA-----CGTGAATACGATGT-GAACTCGTGG-TATC--GACT-TCGACA-CCCA-CCTTATTCCCTACCT-TATA-T-AGCACGCCTCGGATTTG-GCCTATTTTCTAA-TTACNNNNNNN--NNN-NNNNNNNNNNNNN--NNACT-T-AAGAAGGCCAGCTTGAGGGGGCA--AAC-AT-TTGATTTGGAA-GGAGATAATAGAGGAGCAGTGAGG-A-ATT-TCAACGTG-TTTCTG-A-ATCA-GGCG--TGGTTT--GAAGAT-GT-GTTTGACAAA---TGG-GTG--AAA--CTAC-----AAAACGCATCGCGC-AGCGGGGA--CAAT-ACTAAAAT--G-AAAA-AGA-ACTCTAAT-AACGTCAT-GAC-TT-GTGCGCC-AACAGATAT-GAACATAGGTGTTTGATTTTTGTT-TTATGTTAATATTAAGAGAT-ACATTTTGATGAAAATT----TGTACAGAGT-AGT--ACTAAATG--ATGCTAATTATAAAT-AGCAAAAG--AAATTTAATACAAT--TTTCTTA-CA-AATAAACGA
gi|4 : caA---G--TCGTG--GACAATGT--TAAT--AATTT-CCAAA------CTACG-CAT-CAGATCCA--AAA-A-TA---------TTTTTTACATTAA---TAACT------TT-A--GCTT-ACAT-CAAA--CAAAA---G--TGT-AAAATCTAAAA-CA---AATAT-CATAA-CAAATAAATG-AGC-G-ATTT-AC----TCTA------------TC--T---------G-CC--A-T--GTTG-GAGC-ACGCAC-AAATGT---C---A--TTAAACATTTTCT-A-TA-ATCC-ACT-GGGA-TAGATGA---AAGAAT-ATAGCTTCATGA---TAGATAT--TTTGCATTCAAA-TT-CATATCAACGGA-ATC-TGTG-GTGTTTTCT-GCCTAAT---ACACA-AGGT--TTTTAAGC-GTATGA-CGTCATA-AAT-GG-TAGAGA---------CAT-----------------AAAT--AGA-TTT---AATGTAACGGTAACCAAGACATTG-TCA---GCGCACA-GAT--AAAT-TATCAAATT-TTGT---GTAGA-TCGT----------GGTTT--T---ACTC-CAACTCAGACAAAACGGGA-GATGGAAGG-GA-CATCA--GATCACAGAAATGTTAGCA-TACCATGACA---TT--GAACATAAT-ATT--TATCATCATT-ACAATGCCCT-TGCGCACACATCGGCCA-AAATA-GATCTAGAACTCATGGTCATC-GGACT-TTGACA-CCCA-CCTTGCTCCCTAGACATATT-T-AGCACGGCTCAATTTTT-GCCTATTTTCTACTTT---TGAAC----GC-CAGCTTAAGGGGC--AAACG-T-TTG------A-TTTGGATGG--A--GAT-AT-TTT-------A-GGAG------------CAGTG-GGGA-ATT-TCAACGTG-TCTCTG-A-ATCA-GGCG--TGGTTT--GAATGT-GT-GTTTGACTAA---TGG-GCG--AAA--CGGCAT-GGAAAATGCATCGCGC-TTCGGGGA--CAAT-ACT----T--A-AAAA-AAACCCTCTGAT-AACGTCAT-GAT-TT-
gi|5 : -TATA-T-AGCACCGCTC-GATTTTAGCCTATTTCATAC-TTCA-TGAAAAGTGGCGCAGCTTGAGCGGTGCAAACA-TATTG-----CA-TTTGGAG-------AAT-AATTTG-------ATGGAG------------CAGT--TGAA-ATT-T-AACGTG-TCTCCT-A-A-CACGGTG---GGTTT--GAAGGC--TGGTTTGACAAA---TGAGGTGGAAAA--CGACAT-GAAAAATGCATCGCGCAATCGGGGA--AAAT-ACT----T--GAAAAA-AAA-ACTCTGATAAACGTCAT-GACTTT-GTGCGCC-GACAGATATAGGACATA-GTCTTTAA-TTTTGTTATTCTGTTAATATTAAGAGATAACA-TTTGATGAAAA-TTCAGTGTACAAATT-AGTAAAC-AAATG--ATGC-A---AAAAATCAG-AAAAGGAAAG-TTAAT---ACTATTTCTTA-CAGAATAAATGAA-TTATCAACCA-TGTCCACGAGCTTTTTGGGAGCAACCCTCGTAGTAT
gi|6 : cca-CGAGG---G--TTGTCC-CA-AAAA---G--TCGTG--GACAATGT--TAAT--AATTT-CCAAA------CTACA-CA----GATCCA--AAAGA-TA---------TTTT-TACATTAA---TAACT------TT-A--ACTT-ACAT-CAAA--CAAAA---G--TGT-AAAATTTAAAAACA---AATAT-CAT-A-TAAATAAATG-AGC-T-A-TT-TCAG-AT---AAGA-G---TGCTC--T---AA-TGAG-CC--G-T--GTTG-GCGC-ACGTAC-AAA-A----A---A--GTGTACATTTT-T-A-TG-ATCCAATT-GGTT-TAAATGA---AAGGAT-ATAGCTTAATAA---TATATAT--ATTGCATT-GAACTT-TATATCg
gi|7 : -CGAGG---G--T-GTCCACA-AAAAAAAG--TCGTG--GACCATGTG-TAAT--AATTTTCCTAAGATGATCTGC----T-CAGATCCT--AATGA-TACTTACTTTATTTCTCACATTAGATTTAATTCACACATT-AGAACTTGACAGGCAAATGCAAAATAAG--TGT-AAATTTTTAAAGCAGGTAATATGCATAT-GAATTAAATGAAGCAT-ATTTATCAG-AT-TAAGGT-GGTCTACTCA-TCAGAATTGAGACCAAA-TAAGTTGCGCGCGACGTAC-AGATA----CTAGG--GTGAACATTTTtggttattctctgctacaatgttttc
gi|8 : ta--GTTG-GCGC-AC-TAC-AAATAAGGTC------GTGAACATTTTCTGA-TGGATCC-ATT-GGGGGTA-ATGA---AAG-AT-TTAACTTCATAA---TAAA-AT--C--GCATTCAAA--T-TATATCAACGGACATC-TATGCATGTTTT----CTGTATGT-ATACG-AGGTCGTTTCAAGC-GTAAGA-CGTCATGTAAT-G--CAGGGAA-TGAC--TCATT-TTAAA-CGTCTCTGTAA-TGAAGT-TTTCTCAATG-AACG-CAACCACGACCTTG-TTGTACGCGCACA-GAT--AAAT-TATC--AAT-TTGT---GTAGATTCGT-----gccgatatattgattactaaat
gi|9 : cAT--AATTT-CCAAA------CTACG-CAT-CAGATCCA--AAAGA-T----------TTTTTTACATTAA---TAACT------TT-A--ACTT-ACAT-CAAA--CAAAA---G--TGT-AAAATTTAAAA-CA---AATAT-CATAT-CAAATACATG-AGA-A-ATTT--CAG-AT-TAAGGA-G---TGCTCAGT---A--TGAG-CC--A-T--GTTG-GCGC-ACGTAC-AA---------------------TTTTCT-A-TG-ATTC-ATC-GGGT-TAGATGA---AAGGAT-ATAGCTTCATAA---gt