lowQualScore : 1111111111111111111111
lowQualScore : 1111 444444 22222222 2222222222222222222222 222 11111 111111 1111 1111111111111111 111111
lowQualScore : 3 3 44 6666 8 3 3 3 333 0 111111 5 66666666 3 5555555555555555555555 1 8 3 333 4 88888 3 111111 33 5 0000 2 5555555555555555 2 2 2 111111 2 8888888 2 2 2 33 22 3 2 5 1 2 6
lowQualScore : . . .. .... . . . . ... . ...... . ........ . ...................... . . . ... . ..... . ...... .. . .... . ................ . . . ...... . ....... . . . .. .. . . . . . .
lowQualScore : 3 3 66 7777 4 3 3 3 777 7 666666 7 55555555 6 5555555555555555555555 4 6 6 888 0 88888 6 555555 77 5 3333 7 6666666666666666 4 1 1 666666 0 3333333 0 0 0 66 99 2 5 3 7 2 0
consensus : AGGCCCGTTTACACAGCAA-GT-C--AAAAA-ATACATG-TG-T-A-AGACAT-CATGANCATCTTA-GACNTGTTGAT-TAGAACAAGATCTATT----G-C-TA---CCTATGTCCGACAC-ACATGTTT-CCA----AAGTCTTT-GACTTA------TCAGT--GTTT----A-CA----------------CA-GCAAG-T-TTTG----ACAT-G----C--A-TG-T-CA-GAAC-TTGCATGTTC-AAA-ACTTGCTGTGTAAACGGGC
Reference ( gi|2 ) : AGGCCCGTTTACACAGCAA-GT-C--AAGGA-ATGCACG-TG-T-A-AGACATTCATGAGCATCTTG-GACCTCTTGAT-TAGAACAAGATCTATTACTAGAC-TATTACCTATGTCTGACAC-ACAGGTTT-CCA----GAGTCTTT-GACTTA------TCAGT--GCTT----A-CA----------------CA-GCAAG-T-TTGG----ACAT-G----T--A-TG-T-CA-GAAC-TTGCATGTTC-AAA-ACTTGCTGTATAAATGGAC
gi|4 : AGGCTCGTTTATACAGCAA-GT-C--AAAAC-ATACATG-TG-C-A-AGACAT----GAGCATCTTAAGACTTGTTGAT-TAGAACAAGATCTACT-------------------TCCGACAC-AC--GTTC-CCG----AAGTCTTT-GACTTG------TCAGT--GTTT----A-CA----------------CT-GCATA-T-TTTG----ACAT-G----T--A-TA-T-CA-GAAC-TTGCATTTTC-AAA-ACATACTGTGTAAATAG
gi|5 : ataAGGCTCGTTTACACAGCAA-GT-C--AAGAA-ATGCATG-TG-----AGACAT----GAGCATC------------GAT-TAGAACAAGATCTATC------C------CCTATGTCCGAAAC-ACACGTTT-ACA----AAGTCTGA-GACTTA------TTAGT--GTTT----A-CA----------------CA-GCAAG-T-TTTG----ACAT-G----C--A-GG-T-CA-GAGC-TTGCATGTTC-AAA-GCATACT
gi|6 : aAGGCCCGTTTACACAGCAG-GT-C--AAA-A-ATACATG-TG-T-A-A--CA--CATGACCATCTTA-GATATCTTGAT-TAAAACAAGATTTATTTC----C-TA------AT-TCAGATA-------TTT-CCC----AAGTCTTTTAACTTACATGTATCAGT--GTTT----G-CA----------------CG-GAACG-T-TTTG----ACAT-G----T--A-TG-T-CG-TAAC-TTGCATGTTC-AAA-ACTaatatgtaaa
gi|7 : AGACCCGTATACACAGCAA-GT-C--AAAG--ATATATG-TG-T-G-AGA----CATGATCGTCTTA-AATGTGTTGAC-TAGAACAA----TAT-----G---TATTCCCTATGTCCGGCAC-ATATGTTC-CCA----AAATCTTT-GACTTA------TCGGT--GTTT----ATCA----------------CA-GCAAA-T-ATGC----AAAT-GTATTT--A-TG-C-CA-GAAC-TTGAATTTTC-A
gi|8 : AGGTCCGTTTACACAGTAA-GT-C--AAAAC-AT-CATG-TG-TTA-AGACAT----GAACGTCTTA-G-CTTGTTGAAATAGAGCAAGAATTATTCCTA------------ATGTCAGACAC-ACATGTTTTCCA----AAGTATTT-GA-TTA------TCAGT--GTTT----A-AA----------------CA-GCACT-T-TTTG----ACAT-G----C--ATTG-T-CA-GAAC-T
gi|9 : taaAGGCCCGTTTACACAGCAA-GT-C--AAAAA-ATACATT-TA-T-A-AGA----CATGGCCATCTTA-GAGA-CTTG---TAGA--------TA-GACCAGATATGTTCCCTATGTCAGATAC-AAATGTGT-CCA-----------------TA------TCAGT--GTTTGTAAA-CA----------------CA-GAAAG-T-TT---------T-G----T-------------AAC-TTGCATGTTC-AAA-ACTgtaat
gi|13 : ttaAGGCCCGTTTACACAGCAA-GT-C--AAAAC-ATACATG-TG-T-A-ATA----CATGAGCATCTTA-GACag
gi|17 : AGACCCGTTTGCACAGCAA-GC-C--AAAAG-ACACATG-TG-T-A-atgtttctatcatttccg
gi|1 : aGGCCCGTTTACAC-GCAATGTCC--AAAAA-ATCCACATTGCT-ATAAATAACTAT--CCATCTTA-CAACTGTGGAT-TAG-ACAGAGTCTGTT-------------CCCATGTCAGATACTAAATGTTT-CCATATCTAGTGTTT-GACT
gi|12 : GCCTGTTTACACAGCAA-AT----ATTGA-ACGTGCA-TG-T-acgaaaaactttcgaaaccttgccaaccgctcaaaaaaatagcttgtgccattctcataaactggctaaaaaaaattatgaaattacgacattacaagagctggaattaccac
gi|10 : CTGTTTACACAGCAC-GT-CTAAAATA-AT--ATG-TG-T-A-AAAC---C-TGATCTTCTTA-AACTTGTTGAT-CAGAAC----TTT-TTAAAAGAT-------CTAT-TCCGACAC-AC--GTTT-TGA----AA-TCTTT-GACTTG------TT--T--TTTT----A-TA----------------TT-GCAAG-T-TTTG----ACAT-G----A--A-TA-T-tttgacctgcatgtcaaaacttgctgtataaacactggggtttccaatcaacaagtcaagacatg
gi|11 : aCGTTTACACAGCAA-GT-T--TTGAACAGGCATG-T--T-C-TGACATGCATGtca
gi|3 : cttgagttgttgattagaacattatctattacctatgttcaacaaatgtttccaaagtttttgacttttcagtgttttgaACCTTA-GATTTGTTGAT-TAGAACAAGATTTATT------C------CCTATGTCTGACAC-ACATGTTT-CCA----AAGTCTTT-GACTTA------CCAGT--GTTT----A-CATGTGTAGTTGTAGTTGTA-GCAAG-T-TTTGACATACAT-G----T--A-TG-T-GA-GAAA-TTGCACATTC-AAA-AC
gi|11 : gtatatattgtttatactacattaaactaagctttatacacacatTTGAT-TAGAACA-------TTAT----C-TATTACCTATGTTCAACAA-AT--GTTT-CCA----AAGTTTTT-GACTTT------TCAGT-------------------------------------G-T-TTTG----ACAT-G----C--A-TG-T-CA-GAAC-ATGCCTGTTC-AAA-ACTTGCTGTGTAAACG
gi|15 : cttgagttgTTGAT-TAGAACAAGA------ATTAGATATATTACCTATGTCCGACAC-A
gi|5 : cttgTT-TACATA------TTAGTATGCTTTGA-A-CA----------------T--GCAAG-C-TCTG----ACCT-G----C--A-TG-T-CA-AAAC-TTGC-TGTGT-AAACACT
gi|12 : aaggctcgtttacacagcaagtcaagaaatgcatgtgagacatgagcatcgattagaacaagatctatcccctatgtccgaaacacacgtttacaaagtctgagacttattCAGT--GTTT----A-TA----------------CA-GCAAG-T-TTTG----ACAT-G----C--A-GG-T-CA-AAAC-ATGCACGTTC-AAT-ATTTGCTGTGTAAACAGG
gi|12 : T--GTTT----A-CA----------------CA-GCAAA-TATTGA----ACGT-G----C--A-TG-T-TT-TGAC-CTGCATGT-C-AAA-ACTTGCTGTATAAAgggtttccaatcaacaagtcaagacatg
gi|10 : gccT--GTTT----A-CA----------------CA-GCACG-T-CTAA----A-ATAA----T--A-TG-TGTA-AAAC-CTG-ATCTTCTTAA-ACTTGTTGcactggggtttccaatcaacaagtcaagacatg
gi|11 : ac--GTTT----A-CA----------------CA-GCAAGTT-TTGA----ACAG-G----C--A-TG-T-TC-TGAC-ATGCATG-TC-AAA-ACatcagaactttttaaaagatctattccgacacacgttttgaaatctttgacttgtttttttatattgcaagttttgacatgaatattca
gi|13 : cttgagttgttgattagaacattatctattacctatgttcaacaaatgtttccaaagtttttgacttttcagt--GTTT----A-CA----------------CA-GCAAG-T-CAAA----ACAT-A----C--A-TG-T-g
gi|6 : aggcccA----------------CATGCAAG-T-TACG----ACAT-A----C--A-TG-T-CA-AAACGTTCCGTG--C-AAACACTgtaatacatgagcatcttagacatgtttctatcatttccg
gi|4 : aggcccgtttacacagcaggtcaaaaatacatgtgtaacacatgaccatcttagatatcttgattaaaacaagatttatttcctaattcagatatttcccaagtcttttaacttacatgtatc----------------CA-ACAAG-T-CTTA----AGAT-G----CTCA-TG-T-CTTGCAC-ATGTATGTTT-TGA--CTTGCTGTATAAACGtcaaaact
gi|5 : ataaggct-T-TTGA----ACAT-G----C--A-AGCT-CT-GA-C-CTGCATGT-C-AAA-ACTTGCTGTGTAAAattagaacaagatctacttccgacacacgttcccgaagtctttgacttgtcagtgtttacactgcatattttgacatgtatatcagaacttgcattttcaaaacatactgtgtaaatag
gi|6 : aaggctcgtttacacagcaagtcaagaaatgcatgtgagacatgagcatcgattagaacaagatctatcccctatgtccgaaacacacgtttacaaagtctgagacttattagtg-T-TTGA----ACAT-G----C--A-AG-T-TA-CGAC-ATACATGT-C-AAA-ACGTTCCGTGCAAAgcatactaatatgtaaa
gi|3 : aggcccgtttacacagcaggtcaaaaatacatgtgtaacacatgaccatcttagatatcttgattaaaacaagatttatttcctaattcagatatttcccaagtcttttaacttacatgtatcagtg----ACAT-G----T--A-TG-T-CA-AAAC-TTGCact
2 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|14 ): GCTATCTTTAAACTGGCTAAAAATGATGAACAATATGACAAGAGGTACA
Unaligned ( gi|16 ): ATTTTAAAATGTATAGATCTGTTAAAAATATTTAATACAGT
Alignments
lowQualScore : 2222222 1111111 66666666666666666 111111 2222222222222222 111
lowQualScore : 3 3 2 55 3 3 3 0 9999999 1 6666 2 3 0000000 22222222222222222 1 3 2 3 66666 3 111111 888888 4444444444444444 7777 99999 3 444
lowQualScore : . . . .. . . . . ....... . .... . . ....... ................. . . . . ..... . ...... ...... ................ .... ..... . ...
lowQualScore : 6 6 3 00 6 6 6 7 5555555 0 2222 1 3 8888888 11111111111111111 0 3 8 6 88888 6 555555 222222 1111111111111111 7777 55555 6 000
consensus : AGGCCCGTTTACACAGCAA-GT-CAAAAAAT--ACA-TG-TGT-AAGACAT-CATGANCATCTT--A-GACTTGTTGAT-TAGAAC-------AAGATCTA--T-T-CT---------CCTATGTCCGACAC-ACATG-TTTCCA-A---AGTCTTT-GACTTA------TCAGTGTTT----A-CA----------------CAGCAAGTTTTG----ACATG----CA-TGTCAGAACTTGCATGTTCAAAACTTGC---TGTGTAAACGGGC
Reference ( family-2799 ) : AGGCCCGTTTACACAGCAA-GT-CAAAAAAT--ACA-TG-TGT-AAGACAT-CATGANCATCTT--A-GACNTGTTGAT-TAGAAC-------AAGATCTA--T-TGCTA--------CCTATGTCCGACAC-ACATG-TTTCCA-A---AGTCTTT-GACTTA------TCAGTGTTT----A-CA----------------CAGCAAGTTTTG----ACATG----CA-TGTCAGAACTTGCATGTTCAAAACTTGC---TGTGTAAACGGGC
gi|1 : GGCCCGTTTACAC-GCAATGTCCAAAAAATCCACATTGCTAT-AAATAAC-TAT--CCATCTT--A-CAACTGTGGAT-TAG-AC-------AGAGTCTG--T-T------------CCCATGTCAGATACTAAATG-TTTCCATATCTAGTGTTT-GACT
gi|10 : CTGTTTACACAGCAC-GT-CTAAAATA--ATA-TG-TGT-AAAAC---C-TGATCTTCTT--A-AACTTGTTGAT-CAGAACTTTTTAAAAGATCTA--T--------------------TCCGACAC-AC--G-TTTTGA-A---A-TCTTT-GACTTG------TT--TTTTT----A-TA----------------TTGCAAGTTTTG----ACATG----AA-TATacgaaaaactttcgaaaccttgccaaccgctcaaaaaaatagcttgtgccattctcataaactggctaaaaaaaattatgaaattacgacattacaagagctggaattaccac
gi|11 : aCTT----GAGTTGTTGAT-TAGAAC-------ATTATCTA--T-T---A--------CCTATGTTCAACA--A-ATG-TTTCCA-A---AGTTTTT-GACTTT------TCAGTGTTT----------------------------------TG----ACATG----CA-TGTCAGAACATGCCTGTTCAAAACTTGC---TGTGTAAACGtca
gi|12 : CAGTGTTT----A-TA----------------CAGCAAGTTTTG----ACATG----CA-GGTCAAAACATGCACGTTCAATATTTGC---TGTGTAAACAGGC
gi|13 : AGGCCCGTTTACACAGCAA-GT-CAAAACAT--ACA-TG-TGT-AATA----CATGAGCATCTT--A-GACATGTTgggtttccaatcaacaagtcaagacatg
gi|15 : CTTGTTGAT-TAGAAC-------AAGAATTAGATATATTA--------CCTATGTCCGACAC-Atctatcatttccg
gi|17 : AGACCCGTTTGCACAGCAA-GC-CAAAAGAC--ACA-TG-TGT-A
gi|2 : aAGGCCCGTTTACACAGCAA-GT-CAAGGAAT--GCA-CG-TGT-AAGACATTCATGAGCATCTT--G-GACCTCTTGAT-TAGAAC-------AAGATCTA--T-TACTAGACTATTACCTATGTCTGACAC-ACAGG-TTTCCA-G---AGTCTTT-GACTTA------TCAGTGCTT----A-CA----------------CAGCAAGTTTGG----ACATG----TA-TGTCAGAACTTGCATGTTCAAAACTTGC---TGTATAAATGGAC
gi|3 : ACCTT--A-GATTTGTTGAT-TAGAAC-------AAGATTTA--T-T-C----------CCTATGTCTGACAC-ACATG-TTTCCA-A---AGTCTTT-GACTTA------CCAGTGTTT----A-CATGTGTAGTTGTAGTTGTAGCAAGTTTTGACATACATG----TA-TGTGAGAAATTGCACATTCAAAAC
gi|4 : gtatatattgtttatactacattaaactaagctttatacacacatAGGCTCGTTTATACAGCAA-GT-CAAAACAT--ACA-TG-TGC-AAGACAT----GAGCATCTT--AAGACTTGTTGAT-TAGAAC-------AAGATCTA--C-T------------------TCCGACAC-AC--G-TTCCCG-A---AGTCTTT-GACTTG------TCAGTGTTT----A-CA----------------CTGCATATTTTG----ACATG----TA-TATCAGAACTTGCATTTTCAAAACATAC---TGTGTAAA
gi|5 : ataAGGCTCGTTTACACAGCAA-GT-CAAGAAAT--GCA-TG-TG---AGACAT----GAGCATC--------------GAT-TAGAAC-------AAGATCTA--T-C-C----------CCTATGTCCGAAAC-ACACG-TTTACA-A---AGTCTGA-GACTTA------TTAGTGTTT----A-CA----------------CAGCAAGTTTTG----ACATG----CA-GGTCAGAGCTTGCATGTTCAAAGCATACTAATATGTAAAtag
gi|6 : aAGGCCCGTTTACACAGCAG-GT-CAAAAA-T--ACA-TG-TGT-AA--CA--CATGACCATCTT--A-GATATCTTGAT-TAAAAC-------AAGATTTA--T-T--T---------CCTA------ATTC-AGATA-TTTCCC-A---AGTCTTTTAACTTACATGTATCAGTGTTT----G-CA----------------CGGAACGTTTTG----ACATG----TA-TGTCGTAACTTGCATGTTCAAAACT
gi|7 : AGACCCGTATACACAGCAA-GT-CAAAGA-T--ATA-TG-TGT-GAGACAT----GATCGTCTT--A-AATGTGTTGAC-TAGAAC-------AATATGTA--T-T-C----------CCTATGTCCGGCAC-ATATG-TTCCCA-A---AATCTTT-GACTTA------TCGGTGTTT----ATCA----------------CAGCAAATATGC----AAATGTATTTA-TGCCAGAACTTGAATTTTCA
gi|8 : AGGTCCGTTTACACAGTAA-GT-CAAAACAT---CA-TG-TGTTAAGACAT----GAACGTCTT--A-G-CTTGTTGAAATAGAGC-------AAGAATTA--T-TCCTA-----------ATGTCAGACAC-ACATGTTTTCCA-A---AGTATTT-GA-TTA------TCAGTGTTT----A-AA----------------CAGCACTTTTTG----ACATG----CATTGTCAGAACT
gi|9 : taaAGGCCCGTTTACACAGCAA-GT-CAAAAAAT--ACA-TT-TAT-AAGA----CATGGCCATCTTAGA-GACTTGTAGA--TAG-AC-------CAGA--TA----TGTTC--------CCTATGTCAGATAC-AAATG-TGTCCA-----------------TA------TCAGTGTTTGTAAA-CA----------------CAGAAAGTTTTG-------T--------------AACTTGCATGTTCAAAACTgtaat
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|14 ): GCTATCTTTAAACTGGCTAAAAATGATGAACAATATGACAAGAGGTACA
Unaligned ( gi|16 ): ATTTTAAAATGTATAGATCTGTTAAAAATATTTAATACAGT
Alignments
lowQualScore : 2222222 11111111111111 4444444444444 111111 2222222222222222 111
lowQualScore : 3 3 2 55 3 3 3 0 9999999 1 6666 1 3 33333333333333 0 7777777777777 3 1 3 2 3 66666 3 111111 888888 4444444444444444 7777 99999 3 444
lowQualScore : . . . .. . . . . ....... . .... . . .............. . ............. . . . . . ..... . ...... ...... ................ .... ..... . ...
lowQualScore : 6 6 3 00 6 6 6 7 5555555 0 2222 0 3 44444444444444 2 3333333333333 3 0 3 8 6 88888 6 555555 222222 1111111111111111 7777 55555 6 000
consensus : AGGCCCGTTTACACAGCAA-GT-CAAAAAAT--ACA-TG-TGT-AAGACAT-CATGANCATCTT--A-GACTTGTTGAT-TAGAAC-------A------AGATCTATT------C-----CCTA-TGTCCGACAC-ACATG-TTTCCA-A---AGTCTTT-GACTTA------TCAGTGTTT----A-CA----------------CAGCAAGTTTTG----ACATG----CA-TGTCAGAACTTGCATGTTCAAAACTTGC---TGTGTAAACGGGC
Reference ( family-2799 ) : AGGCCCGTTTACACAGCAA-GT-CAAAAAAT--ACA-TG-TGT-AAGACAT-CATGANCATCTT--A-GACTTGTTGAT-TAGAAC-------A------AGATCTATT------CT----CCTA-TGTCCGACAC-ACATG-TTTCCA-A---AGTCTTT-GACTTA------TCAGTGTTT----A-CA----------------CAGCAAGTTTTG----ACATG----CA-TGTCAGAACTTGCATGTTCAAAACTTGC---TGTGTAAACGGGC
gi|1 : GGCCCGTTTACAC-GCAATGTCCAAAAAATCCACATTGCTAT-AAATAAC-TAT--CCATCTT--A-CAACTGTGGAT-TAG-AC-------A------GAGTCTGT--------T----CCCA-TGTCAGATACTAAATG-TTTCCATATCTAGTGTTT-GACT
gi|10 : CTGTTTACACAGCAC-GT-CTAAAATA--ATA-TG-TGT-AAAAC---C-TGATCTTCTT--A-AACTTGTTGAT-CAGAACTTTTTAAA------AGATCTAT--------------------TCCGACAC-AC--G-TTTTGA-A---A-TCTTT-GACTTG------TT--TTTTT----A-TA----------------TTGCAAGTTTTG----ACATG----AA-TATacgaaaaactttcgaaaccttgccaaccgctcaaaaaaatagcttgtgccattctcataaactggctaaaaaaaattatgaaattacgacattacaagagctggaattaccac
gi|11 : aCTT----GAGTTGTTGAT-TAGAAC-------A------TTATCTATT------A-----CCTA-TGTTCAACA--A-ATG-TTTCCA-A---AGTTTTT-GACTTT------TCAGTGTTT----------------------------------TG----ACATG----CA-TGTCAGAACATGCCTGTTCAAAACTTGC---TGTGTAAACGtca
gi|12 : CAGTGTTT----A-TA----------------CAGCAAGTTTTG----ACATG----CA-GGTCAAAACATGCACGTTCAATATTTGC---TGTGTAAACAGGC
gi|13 : AGGCCCGTTTACACAGCAA-GT-CAAAACAT--ACA-TG-TGT-AATA----CATGAGCATCTT--A-GACATGTTgggtttccaatcaacaagtcaagacatg
gi|15 : CTTGTTGAT-TAGAAC-------AAGAATTAGATATATT------A-----CCTA-TGTCCGACAC-Atctatcatttccg
gi|17 : AGACCCGTTTGCACAGCAA-GC-CAAAAGAC--ACA-TG-TGT-A
gi|2 : aAGGCCCGTTTACACAGCAA-GT-CAAGGAAT--GCA-CG-TGT-AAGACATTCATGAGCATCTT--G-GACCTCTTGAT-TAGAAC-------A------AGATCTATTACTAGACTATTACCTA-TGTCTGACAC-ACAGG-TTTCCA-G---AGTCTTT-GACTTA------TCAGTGCTT----A-CA----------------CAGCAAGTTTGG----ACATG----TA-TGTCAGAACTTGCATGTTCAAAACTTGC---TGTATAAATGGAC
gi|3 : ACCTT--A-GATTTGTTGAT-TAGAAC-------A------AGATTTATT------C-----CCTA-TGTCTGACAC-ACATG-TTTCCA-A---AGTCTTT-GACTTA------CCAGTGTTT----A-CATGTGTAGTTGTAGTTGTAGCAAGTTTTGACATACATG----TA-TGTGAGAAATTGCACATTCAAAAC
gi|4 : gtatatattgtttatactacattaaactaagctttatacacacatAGGCTCGTTTATACAGCAA-GT-CAAAACAT--ACA-TG-TGC-AAGACAT----GAGCATCTT--AAGACTTGTTGAT-TAGAAC-------A------AGATCTACT-------------------TCCGACAC-AC--G-TTCCCG-A---AGTCTTT-GACTTG------TCAGTGTTT----A-CA----------------CTGCATATTTTG----ACATG----TA-TATCAGAACTTGCATTTTCAAAACATAC---TGTGTAAA
gi|5 : ataAGGCTCGTTTACACAGCAA-GT-CAAGAAAT--GCA-TG-TG---AGACAT----GAGCATC--------------GAT-TAGAAC-------A------AGATCTATC------C-----CCTA-TGTCCGAAAC-ACACG-TTTACA-A---AGTCTGA-GACTTA------TTAGTGTTT----A-CA----------------CAGCAAGTTTTG----ACATG----CA-GGTCAGAGCTTGCATGTTCAAAGCATACTAATATGTAAAtag
gi|6 : aAGGCCCGTTTACACAGCAG-GT-CAAAAA-T--ACA-TG-TGT-AA--CA--CATGACCATCTT--A-GATATCTTGAT-TAAAAC-------A------AGATTTATT-------T----CCTA-------ATTC-AGATA-TTTCCC-A---AGTCTTTTAACTTACATGTATCAGTGTTT----G-CA----------------CGGAACGTTTTG----ACATG----TA-TGTCGTAACTTGCATGTTCAAAACT
gi|7 : AGACCCGTATACACAGCAA-GT-CAAAGA-T--ATA-TG-TGT-GAGACAT----GATCGTCTT--A-AATGTGTTGAC-TAGAAC-------A------ATATGTATT------C-----CCTA-TGTCCGGCAC-ATATG-TTCCCA-A---AATCTTT-GACTTA------TCGGTGTTT----ATCA----------------CAGCAAATATGC----AAATGTATTTA-TGCCAGAACTTGAATTTTCA
gi|8 : AGGTCCGTTTACACAGTAA-GT-CAAAACAT---CA-TG-TGTTAAGACAT----GAACGTCTT--A-G-CTTGTTGAAATAGAGC-------A------AGAATTATT------C------CTAATGTCAGACAC-ACATGTTTTCCA-A---AGTATTT-GA-TTA------TCAGTGTTT----A-AA----------------CAGCACTTTTTG----ACATG----CATTGTCAGAACT
gi|9 : taaAGGCCCGTTTACACAGCAA-GT-CAAAAAAT--ACA-TT-TAT-AAGA----CATGGCCATCTTAGA-GACTTGTAGA--TAG-AC-------C------AGATATGTT------C-----CCTA-TGTCAGATAC-AAATG-TGTCCA-----------------TA------TCAGTGTTTGTAAA-CA----------------CAGAAAGTTTTG-------T--------------AACTTGCATGTTCAAAACTgtaat
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|14 ): GCTATCTTTAAACTGGCTAAAAATGATGAACAATATGACAAGAGGTACA
Unaligned ( gi|16 ): ATTTTAAAATGTATAGATCTGTTAAAAATATTTAATACAGT
Alignments
lowQualScore : 2222222 1111111 111111111111 111111 2222222222222222 111
lowQualScore : 3 3 2 55 3 3 3 0 9999999 1 6666 1 3 0000000 999999 0 999999999999 1 1 3 2 3 66666 3 111111 888888 4444444444444444 7777 99999 3 444
lowQualScore : . . . .. . . . . ....... . .... . . ....... ...... . ............ . . . . . ..... . ...... ...... ................ .... ..... . ...
lowQualScore : 6 6 3 00 6 6 6 7 5555555 0 2222 0 3 8888888 666666 2 777777777777 2 0 3 8 6 88888 6 555555 222222 1111111111111111 7777 55555 6 000
consensus : AGGCCCGTTTACACAGCAA-GT-CAAAAAAT--ACA-TG-TGT-AAGACAT-CATGANCATCTT--A-GACTTGTTGAT-TAGAAC-------AAGA------TCTATT------C-----CCTATGTCCGACAC-ACATG-TTTCCA-A---AGTCTTT-GACTTA------TCAGTGTTT----A-CA----------------CAGCAAGTTTTG----ACATG----CA-TGTCAGAACTTGCATGTTCAAAACTTGC---TGTGTAAACGGGC
Reference ( family-2799 ) : AGGCCCGTTTACACAGCAA-GT-CAAAAAAT--ACA-TG-TGT-AAGACAT-CATGANCATCTT--A-GACTTGTTGAT-TAGAAC-------AAGA------TCTATT------C-----CCTATGTCCGACAC-ACATG-TTTCCA-A---AGTCTTT-GACTTA------TCAGTGTTT----A-CA----------------CAGCAAGTTTTG----ACATG----CA-TGTCAGAACTTGCATGTTCAAAACTTGC---TGTGTAAACGGGC
gi|1 : GGCCCGTTTACAC-GCAATGTCCAAAAAATCCACATTGCTAT-AAATAAC-TAT--CCATCTT--A-CAACTGTGGAT-TAG-AC-------AGAG------TCTGTT------C-----CC-ATGTCAGATACTAAATG-TTTCCATATCTAGTGTTT-GACT
gi|10 : CTGTTTACACAGCAC-GT-CTAAAATA--ATA-TG-TGT-AAAAC---C-TGATCTTCTT--A-AACTTGTTGAT-CAGAACTTTTTAAAAGA------TCTAT-------------------TCCGACAC-AC--G-TTTTGA-A---A-TCTTT-GACTTG------TT--TTTTT----A-TA----------------TTGCAAGTTTTG----ACATG----AA-TATacgaaaaactttcgaaaccttgccaaccgctcaaaaaaatagcttgtgccattctcataaactggctaaaaaaaattatgaaattacgacattacaagagctggaattaccac
gi|11 : aCTT----GAGTTGTTGAT-TAGAAC-------ATTA------TCTATT------A-----CCTATGTTCAACA--A-ATG-TTTCCA-A---AGTTTTT-GACTTT------TCAGTGTTT----------------------------------TG----ACATG----CA-TGTCAGAACATGCCTGTTCAAAACTTGC---TGTGTAAACGtca
gi|12 : CAGTGTTT----A-TA----------------CAGCAAGTTTTG----ACATG----CA-GGTCAAAACATGCACGTTCAATATTTGC---TGTGTAAACAGGC
gi|13 : AGGCCCGTTTACACAGCAA-GT-CAAAACAT--ACA-TG-TGT-AATA----CATGAGCATCTT--A-GACATGTTgggtttccaatcaacaagtcaagacatg
gi|15 : CTTGTTGAT-TAGAAC-------AAGAATTAGATATATT------A-----CCTATGTCCGACAC-Atctatcatttccg
gi|17 : AGACCCGTTTGCACAGCAA-GC-CAAAAGAC--ACA-TG-TGT-A
gi|2 : aAGGCCCGTTTACACAGCAA-GT-CAAGGAAT--GCA-CG-TGT-AAGACATTCATGAGCATCTT--G-GACCTCTTGAT-TAGAAC-------AAGA------TCTATTACTAGACTATTACCTATGTCTGACAC-ACAGG-TTTCCA-G---AGTCTTT-GACTTA------TCAGTGCTT----A-CA----------------CAGCAAGTTTGG----ACATG----TA-TGTCAGAACTTGCATGTTCAAAACTTGC---TGTATAAATGGAC
gi|3 : ACCTT--A-GATTTGTTGAT-TAGAAC-------AAGA------TTTATT------C-----CCTATGTCTGACAC-ACATG-TTTCCA-A---AGTCTTT-GACTTA------CCAGTGTTT----A-CATGTGTAGTTGTAGTTGTAGCAAGTTTTGACATACATG----TA-TGTGAGAAATTGCACATTCAAAAC
gi|4 : gtatatattgtttatactacattaaactaagctttatacacacatAGGCTCGTTTATACAGCAA-GT-CAAAACAT--ACA-TG-TGC-AAGACAT----GAGCATCTT--AAGACTTGTTGAT-TAGAAC-------AAGA------TCTACT------------------TCCGACAC-AC--G-TTCCCG-A---AGTCTTT-GACTTG------TCAGTGTTT----A-CA----------------CTGCATATTTTG----ACATG----TA-TATCAGAACTTGCATTTTCAAAACATAC---TGTGTAAA
gi|5 : ataAGGCTCGTTTACACAGCAA-GT-CAAGAAAT--GCA-TG-TG---AGACAT----GAGCATC--------------GAT-TAGAAC-------AAGA------TCTATC------C-----CCTATGTCCGAAAC-ACACG-TTTACA-A---AGTCTGA-GACTTA------TTAGTGTTT----A-CA----------------CAGCAAGTTTTG----ACATG----CA-GGTCAGAGCTTGCATGTTCAAAGCATACTAATATGTAAAtag
gi|6 : aAGGCCCGTTTACACAGCAG-GT-CAAAAA-T--ACA-TG-TGT-AA--CA--CATGACCATCTT--A-GATATCTTGAT-TAAAAC-------AAGA------TTTATT------T-----CCTA------ATTC-AGATA-TTTCCC-A---AGTCTTTTAACTTACATGTATCAGTGTTT----G-CA----------------CGGAACGTTTTG----ACATG----TA-TGTCGTAACTTGCATGTTCAAAACT
gi|7 : AGACCCGTATACACAGCAA-GT-CAAAGA-T--ATA-TG-TGT-GAGACAT----GATCGTCTT--A-AATGTGTTGAC-TAGAAC-------AATA------TGTATT------C-----CCTATGTCCGGCAC-ATATG-TTCCCA-A---AATCTTT-GACTTA------TCGGTGTTT----ATCA----------------CAGCAAATATGC----AAATGTATTTA-TGCCAGAACTTGAATTTTCA
gi|8 : AGGTCCGTTTACACAGTAA-GT-CAAAACAT---CA-TG-TGTTAAGACAT----GAACGTCTT--A-G-CTTGTTGAAATAGAGC-------AAGA------ATTATT------C-----CTAATGTCAGACAC-ACATGTTTTCCA-A---AGTATTT-GA-TTA------TCAGTGTTT----A-AA----------------CAGCACTTTTTG----ACATG----CATTGTCAGAACT
gi|9 : taaAGGCCCGTTTACACAGCAA-GT-CAAAAAAT--ACA-TT-TAT-AAGA----CATGGCCATCTTAGA-GACTTGTAGA--TAG-AC-------CAGA------TATGTT------C-----CCTATGTCAGATAC-AAATG-TGTCCA-----------------TA------TCAGTGTTTGTAAA-CA----------------CAGAAAGTTTTG-------T--------------AACTTGCATGTTCAAAACTgtaat
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|14 ): GCTATCTTTAAACTGGCTAAAAATGATGAACAATATGACAAGAGGTACA
Unaligned ( gi|16 ): ATTTTAAAATGTATAGATCTGTTAAAAATATTTAATACAGT
Alignments
lowQualScore : 2222222 1111111 111111111111 111111 2222222222222222 111
lowQualScore : 3 3 2 55 3 3 3 0 9999999 1 6666 1 3 0000000 999999 0 999999999999 1 1 3 2 3 66666 3 111111 888888 4444444444444444 7777 99999 3 444
lowQualScore : . . . .. . . . . ....... . .... . . ....... ...... . ............ . . . . . ..... . ...... ...... ................ .... ..... . ...
lowQualScore : 6 6 3 00 6 6 6 7 5555555 0 2222 0 3 8888888 666666 2 777777777777 2 0 3 8 6 88888 6 555555 222222 1111111111111111 7777 55555 6 000
consensus : AGGCCCGTTTACACAGCAA-GT-CAAAAAAT--ACA-TG-TGT-AAGACAT-CATGANCATCTT--A-GACTTGTTGAT-TAGAAC-------AAGA------TCTATT------C-----CCTATGTCCGACAC-ACATG-TTTCCA-A---AGTCTTT-GACTTA------TCAGTGTTT----A-CA----------------CAGCAAGTTTTG----ACATG----CA-TGTCAGAACTTGCATGTTCAAAACTTGC---TGTGTAAACGGGC
Reference ( family-2799 ) : AGGCCCGTTTACACAGCAA-GT-CAAAAAAT--ACA-TG-TGT-AAGACAT-CATGANCATCTT--A-GACTTGTTGAT-TAGAAC-------AAGA------TCTATT------C-----CCTATGTCCGACAC-ACATG-TTTCCA-A---AGTCTTT-GACTTA------TCAGTGTTT----A-CA----------------CAGCAAGTTTTG----ACATG----CA-TGTCAGAACTTGCATGTTCAAAACTTGC---TGTGTAAACGGGC
gi|1 : GGCCCGTTTACAC-GCAATGTCCAAAAAATCCACATTGCTAT-AAATAAC-TAT--CCATCTT--A-CAACTGTGGAT-TAG-AC-------AGAG------TCTGTT------C-----CC-ATGTCAGATACTAAATG-TTTCCATATCTAGTGTTT-GACT
gi|10 : CTGTTTACACAGCAC-GT-CTAAAATA--ATA-TG-TGT-AAAAC---C-TGATCTTCTT--A-AACTTGTTGAT-CAGAACTTTTTAAAAGA------TCTAT-------------------TCCGACAC-AC--G-TTTTGA-A---A-TCTTT-GACTTG------TT--TTTTT----A-TA----------------TTGCAAGTTTTG----ACATG----AA-TATacgaaaaactttcgaaaccttgccaaccgctcaaaaaaatagcttgtgccattctcataaactggctaaaaaaaattatgaaattacgacattacaagagctggaattaccac
gi|11 : aCTT----GAGTTGTTGAT-TAGAAC-------ATTA------TCTATT------A-----CCTATGTTCAACA--A-ATG-TTTCCA-A---AGTTTTT-GACTTT------TCAGTGTTT----------------------------------TG----ACATG----CA-TGTCAGAACATGCCTGTTCAAAACTTGC---TGTGTAAACGtca
gi|12 : CAGTGTTT----A-TA----------------CAGCAAGTTTTG----ACATG----CA-GGTCAAAACATGCACGTTCAATATTTGC---TGTGTAAACAGGC
gi|13 : AGGCCCGTTTACACAGCAA-GT-CAAAACAT--ACA-TG-TGT-AATA----CATGAGCATCTT--A-GACATGTTgggtttccaatcaacaagtcaagacatg
gi|15 : CTTGTTGAT-TAGAAC-------AAGAATTAGATATATT------A-----CCTATGTCCGACAC-Atctatcatttccg
gi|17 : AGACCCGTTTGCACAGCAA-GC-CAAAAGAC--ACA-TG-TGT-A
gi|2 : aAGGCCCGTTTACACAGCAA-GT-CAAGGAAT--GCA-CG-TGT-AAGACATTCATGAGCATCTT--G-GACCTCTTGAT-TAGAAC-------AAGA------TCTATTACTAGACTATTACCTATGTCTGACAC-ACAGG-TTTCCA-G---AGTCTTT-GACTTA------TCAGTGCTT----A-CA----------------CAGCAAGTTTGG----ACATG----TA-TGTCAGAACTTGCATGTTCAAAACTTGC---TGTATAAATGGAC
gi|3 : ACCTT--A-GATTTGTTGAT-TAGAAC-------AAGA------TTTATT------C-----CCTATGTCTGACAC-ACATG-TTTCCA-A---AGTCTTT-GACTTA------CCAGTGTTT----A-CATGTGTAGTTGTAGTTGTAGCAAGTTTTGACATACATG----TA-TGTGAGAAATTGCACATTCAAAAC
gi|4 : gtatatattgtttatactacattaaactaagctttatacacacatAGGCTCGTTTATACAGCAA-GT-CAAAACAT--ACA-TG-TGC-AAGACAT----GAGCATCTT--AAGACTTGTTGAT-TAGAAC-------AAGA------TCTACT------------------TCCGACAC-AC--G-TTCCCG-A---AGTCTTT-GACTTG------TCAGTGTTT----A-CA----------------CTGCATATTTTG----ACATG----TA-TATCAGAACTTGCATTTTCAAAACATAC---TGTGTAAA
gi|5 : ataAGGCTCGTTTACACAGCAA-GT-CAAGAAAT--GCA-TG-TG---AGACAT----GAGCATC--------------GAT-TAGAAC-------AAGA------TCTATC------C-----CCTATGTCCGAAAC-ACACG-TTTACA-A---AGTCTGA-GACTTA------TTAGTGTTT----A-CA----------------CAGCAAGTTTTG----ACATG----CA-GGTCAGAGCTTGCATGTTCAAAGCATACTAATATGTAAAtag
gi|6 : aAGGCCCGTTTACACAGCAG-GT-CAAAAA-T--ACA-TG-TGT-AA--CA--CATGACCATCTT--A-GATATCTTGAT-TAAAAC-------AAGA------TTTATT------T-----CCTA------ATTC-AGATA-TTTCCC-A---AGTCTTTTAACTTACATGTATCAGTGTTT----G-CA----------------CGGAACGTTTTG----ACATG----TA-TGTCGTAACTTGCATGTTCAAAACT
gi|7 : AGACCCGTATACACAGCAA-GT-CAAAGA-T--ATA-TG-TGT-GAGACAT----GATCGTCTT--A-AATGTGTTGAC-TAGAAC-------AATA------TGTATT------C-----CCTATGTCCGGCAC-ATATG-TTCCCA-A---AATCTTT-GACTTA------TCGGTGTTT----ATCA----------------CAGCAAATATGC----AAATGTATTTA-TGCCAGAACTTGAATTTTCA
gi|8 : AGGTCCGTTTACACAGTAA-GT-CAAAACAT---CA-TG-TGTTAAGACAT----GAACGTCTT--A-G-CTTGTTGAAATAGAGC-------AAGA------ATTATT------C-----CTAATGTCAGACAC-ACATGTTTTCCA-A---AGTATTT-GA-TTA------TCAGTGTTT----A-AA----------------CAGCACTTTTTG----ACATG----CATTGTCAGAACT
gi|9 : taaAGGCCCGTTTACACAGCAA-GT-CAAAAAAT--ACA-TT-TAT-AAGA----CATGGCCATCTTAGA-GACTTGTAGA--TAG-AC-------CAGA------TATGTT------C-----CCTATGTCAGATAC-AAATG-TGTCCA-----------------TA------TCAGTGTTTGTAAA-CA----------------CAGAAAGTTTTG-------T--------------AACTTGCATGTTCAAAACTgtaat
blockSeqs : . . T . . . T CATTCAT T AGA T A TTTTTAA ATTAGA ACTAGACTATTA T C . C T A T CATGTA GTAAA TGTGTAGTTGTAGTTG ACAT TATTT T TAA
blockSeqs : . . A . . . . CACAT G AA T . . . A T C . C . A . . AT . . C . .
blockSeqs : . . A . . . . CCT G A A . . . A T C . C . G . . A . . C . .
blockSeqs : . . A . . . . CAT G A T . . . C T T . C . A . . A . . T . .
blockSeqs : . . A . . . . CAT G G C . . . C T T . C . A . . A . . T .
blockSeqs : . . A . . . . CAT C A T . . . T T C . G . A . . A . . T .
blockSeqs : . . A . . . . CAT T A T . . . C T C . T . A . . A . . C .
blockSeqs : . . A . . . . CAT A A A . . . C A C . C . A . . G . . T .
blockSeqs : . . . . . . . CAT C A G . . . C T A . A . A . . A . . C .
blockSeqs : . . . . . . . . T . . . . . A . . . . . . . . . .
blockSeqs : . T . . . . . . .
blockSeqs : .
blockSeqCons : ** CAT**** A****
originalCons : AGGCCCGTTTACACAGCAA-GT-CAAAAAAT--ACA-TG-TGT-AAGACAT-CATGANCATCTT--A-GACTTGTTGAT-TAGAAC-------AAGA------TCTATT------C-----CCTATGTCCGACAC-ACATG-TTTCCA-A---AGTCTTT-GACTTA------TCAGTGTTT----A-CA----------------CAGCAAGTTTTG----ACATG----CA-TGTCAGAACTTGCATGTTCAAAACTTGC---TGTGTAAACGGGC
finalCons : AGGCCCGTTTACACAGCAA-GT-CAAAAAAT--ACA-TG-TGT-AAGACAT----GANCATCTT--A-GACTTGTTGAT-TAGAAC-------AAGA------TCTATT------C-----CCTATGTCCGACAC-ACATG-TTTCCAA----AGTCTTT-GACTTA------TCAGTGTTT----A-CA----------------CAGCAAGTTTTG----ACATG----CA-TGTCAGAACTTGCATGTTCAAAACTTGC---TGTGTAAACGGGC
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|14 ): GCTATCTTTAAACTGGCTAAAAATGATGAACAATATGACAAGAGGTACA
Unaligned ( gi|16 ): ATTTTAAAATGTATAGATCTGTTAAAAATATTTAATACAGT
Alignments
lowQualScore : 1111111 111111111111 111111 2222222222222222 111
lowQualScore : 3 3 3 55 3 8888 99999 6666 1 3 0000000 999999 0 999999999999 1 1 3 2 3 66666 3 000000 888888 4444444444444444 7777 99999 3 444
lowQualScore : . . . .. . .... ..... .... . . ....... ...... . ............ . . . . . ..... . ...... ...... ................ .... ..... . ...
lowQualScore : 6 6 4 00 6 5555 55555 2222 0 3 8888888 666666 2 777777777777 2 0 3 8 6 88888 6 555555 222222 1111111111111111 7777 55555 6 000
consensus : AGGCCCGTTTACACAGCAA-GT-CAAAAAAT--ACATGTG-TAAGACAT----GA----NCATCTT--A-GACTTGTTG-ATTAGAAC-------AAGA------TCTATT------C-----CCTATGTCCGACAC-ACATG-TTTCCA-A---AGTC-TTTGACT------TATCAGTGTTT----A-CA----------------CAGCAAGTTTTG----ACATG----CA-TGTCAGAACTTGCATGTTCAAAACTTGC---TGTGTAAACGGGC
Reference ( family-2799 ) : AGGCCCGTTTACACAGCAA-GT-CAAAAAAT--ACATGTG-TAAGACAT----GA----NCATCTT--A-GACTTGTTG-ATTAGAAC-------AAGA------TCTATT------C-----CCTATGTCCGACAC-ACATG-TTTCCA-A---AGTC-TTTGACT------TATCAGTGTTT----A-CA----------------CAGCAAGTTTTG----ACATG----CA-TGTCAGAACTTGCATGTTCAAAACTTGC---TGTGTAAACGGGC
gi|1 : GGCCCGTTTACAC-GCAATGTCCAAAAAATCCACAT-TG-CTATAAAT----AACTATCCATCTT--A-CAACTGTGG-ATTAG-AC-------AGAG------TCTGTT------C-----CC-ATGTCAGATACTAAATG-TTTCCATATCTAGTG-TTTGACT------
gi|10 : CTGTTTACACAGCAC-GT-CTAAAATA--ATATGTG-TAAAACCT----GA----TCTTCTT--A-AACTTGTTG-ATCAGAACTTTTTAAAAGA------TCTAT-------------------TCCGACAC-AC--G-TTTTGA-A---A-TC-TTTGACT------TGTT--TTTTT----A-TA----------------TTGCAAGTTTTG----ACATG----AA-TATacgaaaaactttcgaaaccttgccaaccgctcaaaaaaatagcttgtgccattctcataaactggctaaaaaaaattatgaaattacgacattacaagagctggaattaccac
gi|11 : aCTT----GAGTTGTTG-ATTAGAAC-------ATTA------TCTATT------A-----CCTATGTTCAACA--A-ATG-TTTCCA-A---AGTT-TTTGACT------TTTCAGTGTTT----------------------------------TG----ACATG----CA-TGTCAGAACATGCCTGTTCAAAACTTGC---TGTGTAAACGtca
gi|12 : CAGTGTTT----A-TA----------------CAGCAAGTTTTG----ACATG----CA-GGTCAAAACATGCACGTTCAATATTTGC---TGTGTAAACAGGC
gi|13 : AGGCCCGTTTACACAGCAA-GT-CAAAACAT--ACATGTG-TAATACAT----GA----GCATCTT--A-GACATGTTgggtttccaatcaacaagtcaagacatg
gi|15 : CTTGTTG-ATTAGAAC-------AAGAATTAGATATATT------A-----CCTATGTCCGACAC-Atctatcatttccg
gi|17 : AGACCCGTTTGCACAGCAA-GC-CAAAAGAC--ACATGTG-TA
gi|2 : aAGGCCCGTTTACACAGCAA-GT-CAAGGAAT--GCACGTG-TAAGACATTCATGA----GCATCTT--G-GACCTCTTG-ATTAGAAC-------AAGA------TCTATTACTAGACTATTACCTATGTCTGACAC-ACAGG-TTTCCA-G---AGTC-TTTGACT------TATCAGTGCTT----A-CA----------------CAGCAAGTTTGG----ACATG----TA-TGTCAGAACTTGCATGTTCAAAACTTGC---TGTATAAATGGAC
gi|3 : ACCTT--A-GATTTGTTG-ATTAGAAC-------AAGA------TTTATT------C-----CCTATGTCTGACAC-ACATG-TTTCCA-A---AGTC-TTTGACT------TACCAGTGTTT----A-CATGTGTAGTTGTAGTTGTAGCAAGTTTTGACATACATG----TA-TGTGAGAAATTGCACATTCAAAAC
gi|4 : gtatatattgtttatactacattaaactaagctttatacacacatAGGCTCGTTTATACAGCAA-GT-CAAAACAT--ACATGTG-CAAGACAT----GA----GCATCTT--AAGACTTGTTG-ATTAGAAC-------AAGA------TCTACT------------------TCCGACAC-AC--G-TTCCCG-A---AGTC-TTTGACT------TGTCAGTGTTT----A-CA----------------CTGCATATTTTG----ACATG----TA-TATCAGAACTTGCATTTTCAAAACATAC---TGTGTAAA
gi|5 : ataAGGCTCGTTTACACAGCAA-GT-CAAGAAAT--GCATGTG---AGACAT----GA----GCATC--------------G-ATTAGAAC-------AAGA------TCTATC------C-----CCTATGTCCGAAAC-ACACG-TTTACA-A---AGTC-TGAGACT------TATTAGTGTTT----A-CA----------------CAGCAAGTTTTG----ACATG----CA-GGTCAGAGCTTGCATGTTCAAAGCATACTAATATGTAAAtag
gi|6 : aAGGCCCGTTTACACAGCAG-GT-CAAAA-AT--ACATGTG-TAACACAT----GA----CCATCTT--A-GATATCTTG-ATTAAAAC-------AAGA------TTTATT------T-----CCTA------ATTC-AGATA-TTTCCC-A---AGTCTTTTAACTTACATGTATCAGTGTTT----G-CA----------------CGGAACGTTTTG----ACATG----TA-TGTCGTAACTTGCATGTTCAAAACT
gi|7 : AGACCCGTATACACAGCAA-GT-CAAAGA-T--ATATGTG-TGAGACAT----GA----TCGTCTT--A-AATGTGTTG-ACTAGAAC-------AATA------TGTATT------C-----CCTATGTCCGGCAC-ATATG-TTCCCA-A---AATC-TTTGACT------TATCGGTGTTT----ATCA----------------CAGCAAATATGC----AAATGTATTTA-TGCCAGAACTTGAATTTTCA
gi|8 : AGGTCCGTTTACACAGTAA-GT-CAAAACAT---CATGTGTTAAGACAT----GA----ACGTCTT--A-G-CTTGTTGAAATAGAGC-------AAGA------ATTATT------C-----CTAATGTCAGACAC-ACATGTTTTCCA-A---AGTA-TTTGA-T------TATCAGTGTTT----A-AA----------------CAGCACTTTTTG----ACATG----CATTGTCAGAACT
gi|9 : taaAGGCCCGTTTACACAGCAA-GT-CAAAAAAT--ACATTTA-TAAGACAT----GG----CCATCTTAGA-GACTTGTAG-A-TAG-AC-------CAGA------TATGTT------C-----CCTATGTCAGATAC-AAATG-TGTCCA-----------------------TATCAGTGTTTGTAAA-CA----------------CAGAAAGTTTTG-------T--------------AACTTGCATGTTCAAAACTgtaat
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|14 ): GCTATCTTTAAACTGGCTAAAAATGATGAACAATATGACAAGAGGTACA
Unaligned ( gi|16 ): ATTTTAAAATGTATAGATCTGTTAAAAATATTTAATACAGT