lowQualScore : 1111 2222 4444444444444444 5555555555555555555555555555555555555555 11 2222 6666666666666666666666666666666666666666666666666666666 1 444444444444444444444444444444444 111111
lowQualScore : 66 1111 2 0000 3 0000000000000000 3 1 7777777777777777777777777777777777777777 88 555 0 9999 3333 88 8888888888888888888888888888888888888888888888888888888 3 3 3 44 0 333333333333333333333333333333333 888888 1
lowQualScore : .. .... . .... . ................ . . ........................................ .. ... . .... .... .. ....................................................... . . . .. . ................................. ...... .
lowQualScore : 11 1111 7 6666 1 7777777777777777 1 8 0000000000000000000000000000000000000000 77 444 7 6666 2222 11 2222222222222222222222222222222222222222222222222222222 1 1 1 22 2 000000000000000000000000000000000 111111 0
consensus : CACTACA--TAC--C-GTATAAC--GGGTATTTTCT-GCG---G--G-N--GGAANTTTTTGCGA-TTCGAT--N---CC------TA--AANG---GTA-GC---NAAT-TATATTCTGCGTTTCCAATTTC---TGCGG----TTGCA--T-TATAC-CTA-----NCC-AT--A-----CN----T-GT-AC-----NTG---AT---TT-----TTGCGA-TTGT-AA-TTTTT--GCGGATTTTT---------C-CTATCCCGNA---AANT-C-C-GCAAA-A----ATGGACAACCGCAG
Reference ( gi|8 ) : CACTACA--TAC--C-GTATAAC--ACGTATTTTCT-GCG---G--G-A--GGATTTTTTTGCGA-TCCGAT--A---TC------TA--AAAG---GCG-GT---TTAT-TATATTCTGCAGTTCCAATTTC---TGCGG----TTGCA--G-TATAC-CTA-----ACC-AT--A-----CT----T-GT-AC-----TTG---AT---TT-----TTGCGA-TTGT-AA-TTTTT--GCGGATTTTT---------T-CTATCCTGAA---AAGT-T-C-GCAAATA----ATGGACAACCGTAG
gi|3 : CACTACA--TAC--CTGTA-AAC--ACGTATTTTCT-GCG---G----A--GGATTTTTTTGCGA-TCCGAT--A---TC------TA--AAA----GCG-GT---TTATATAT-TTCTGCAGTTCCAATTTC---TGCGGT---TTGCA--G-TATAC-CTA-----ACC-AT--A-----CT----T-GT-AC-----TTG---AT---TT-----TTGCGA-TTGT-AA-TTTTT--GCGGA-TTTT---------T-CTATCCTGAA---AAGT-T-C-GCAAATA----ATGGACAACCGTAG
gi|2 : aatagcttggacaaCTATAGCTAC--C-ATAGAAG--GGGCATTTTCT-ATG---G--T-T--GGAAATGTTTGCGA-TTTGAG--C---CA------TG--AATG---GTA-GC---CATT-TATGTTCTGCGCTTCCAATTTC---TGTGG----TTAGA--T-TGTACAGTA-----CCC-GT--ATGTATCTA---T-GT-GC-----ATGTAAATATATT-----TTGTGATTTAT-AA-TTTTTTCTCGAATTTTT---------C-CAAT-CTGCA---AATT-TCC-ACAAATAATGCATGGACAACCACAGat
gi|12 : CTACA--CGCATT-ATATAAC--AAGTATTTTCTTGCA---G--T----GGAAATTTTTGTGA-TTTGAT--AATCCC------TT--AACG---GTA-GG---AAAT-TATATTCTGCGCTTCTGATTTC---TTCGA----TTGCA--aaa
gi|5 : tgtacatgttattataattatagtgtTAAA--TAC--T-GTACAAC--GGGTCATTTCT-GCG---GTCGCA--AAATTTT---GCAA-TCCGAT--T---CC------AA--AAAG---GTA-GTAATTTAC-AATAT---GCGTTTCTAATTTC---CCAAG----TTGTA--T-CATGC-CTA-----TCT-AT--A-----CC----TAGT-AT-----ATG---TT---ATAA---TTGCGA-TTGT-AA-TTTTT--GTGGATCTTT---------C-CTATCCGCAA---AATT-C-C-GCAGGGA----ATGGGCAACCtgataaggatgcatttatgtagagaatgtttacacaaatgat
gi|7 : aACA--TAC--C-GTATAAT--GGATACTTTCT-GAGATTG--G-A----ATTTTTTTGCGA-TTTAAT------TCA-----TA--AATG---GTA-GC---C-----A-ATTCTGCATTTCCAATTTC---TACAG----CTGCA----TGTAC-CGA-------T-GT--A-----CA----T-GTTAC-----TAC---AT---TTAAAGTTTGCGA-TTGA-AA-TTTTT--GGAAAAATTT---------T-CTAT-CTGCA---AAGTCC-C-ACAAAAT----ATGAACAGCCactgaaa
gi|11 : atataaACA--TAC--T-GTATA-T--ACGT--------GCGATTG--G-A--AA----TTTTGCGAATTGAAT--AGA-TC------CATTAGTG---GTA-GC---AAAT-TACATTCTGCGTTTCCAATACC---TGAAG----TTGC-----TTTAC---------ACC-A----------T----T-AT-AC-----ACGC--AA---TT-----TTGCTA-TTGT-AATTTTTT--GCAG--TTTT---------C-CTATTC-GCA---AAAT-T-CTGCAAA-A----ATTGACAATCGCAGacaatt
gi|4 : --TAC--T-GTATAGTGGAAATATTTT---GCA---G--C-T--GGAAATTTTTGCGA-TTTGAT--C---TT------TA--AATG---GTA-GC---AAAT-TTTACCCTGCTTCTCCAATTTC---TGTGG----TTGCATTA-TATAT-CTA-----TAC-AT--G-----CA----T-GC-AT-----TTA---TC---TT-----TTGCAA-ATGT-GA-ATTTT--GTGGATTTTTCAATTTTTCT-TTATCCGCAA---TAGT-C-C-CCCAA-A----ATGAACTACCaaaat
gi|13 : --TAC--A-GTATAACTGAGATATTTACT-GCG---G--G-T--GGAAATCTTTGAAA-TCCAAT--A---CC------TA--AAAG---GC-------------------TGCAAATCATATCTC---TGTGG----TTGCA--T-TATA---TA-------C-AT--C-----TC----T-TT-AC-----CTG----T---GT-----AT-CG--TTGT-AT-TTTTT--GCGGATTTTT---------C-CTTTC---------------C-GCAGATA----ATGAACACCCGaaaaacatc
gi|6 : --TAC--T-GTACAAT--GAGCATTTTCT-GCG---G--T-T--TGAATTATTTGCAA-TTTGAT--C---CA------TA--AATG---GTA-GC---AATT-TATATTCTGT--TTCCAATTCCTTTTGCAGTGAATTG-A--GTTATAC-CTATATGCACCAATGAG-----CA----T-GT-AC-----------AT---GT-----ATATGA-TTG---A-TTTTT--GT-GATTTTT---------TACT-------------GT-C-T-GCAAA-A----ATGGACAActtaaaa
gi|14 : tatacgtAC--T-GTTTAAC--TGGTATTTTCT-GTG---ATTG-A--AAA--TTTTTGCGA-TTTGATCAA---T-------TA--GAAT---G-------------TCTACTCTGCATTTCCAAATTC---TGCAA----TTGCA--T-TAgcagagaaacta
gi|9 : attcagaagtgtaaAC--T-GTAAAAC--GAGTATTTTCT-GCG---G--G-T--GAAAATTTTTGCGA-TCCGAT--C---AA------TA--AAAA---GTACAT---TTCT-AAGATTCTcccgtgtaccacaaatatcatttaatggatatacaagatgtttaggaaaaa
gi|16 : ccagcatttacaattataaaATTTTCT-T-----G--G-ATTGAACATTTTTGTGA-TTTGAT--T---AC------AA--AAAGATAGCA-AA---TTAT--ATATTCCGC--TTCCAATTTT---TGTGG----TTGCA--T-TATAttgtcattacctttactcttcacatctgtctgtctgtctgttctctctctctctcatgtattttttacggattttgcgaaaaaatgatcatctgcagaaactat
gi|1 : tctgaaatattatcatatgtcataaaatggagTCT-GCG---T--T-T--GGAATTTTTTGCAA-TCT--T--A---TCATTCTGTG--AATA---GTA-GC---AAAT-TATATTTTGCATTTCAAATTTC---TGC------TTGCATTA-TATAT-GTA-----CCT-AT--A-----------T-AT-AT-----ATA---A-----T-----TTGTGA-TTGT-AA-GATTT--GCTGAATTTT---------C-TTAT-CTGGG---AA-T-C-C-ACAAAAA----GTAGACAATCACAG
gi|10 : aatcaagtatggacaatcaggacataaaacaaatgctgtataaaAT-CATGTTCTTTGTTTCCAATTTT---TGAGG----TTGCA--T-CATAC-TTATAAGTACC--T--A-----CTATCAT-GT-ACAGGTATCA---ATA--TT-----TTGCGA-TTGT-AA-TTTTT--GTGGA-TTTT---------T-CT-TCACGA--------------CAAA-A----CTAGACAACTGCAGaaaatact
gi|11 : gaattttctttggttggtttcgatttaatctgtaaattattataaaaaagtaacaaT---TT-----CTGCGA-TTGTCAA-TTTTT--GCAGAATTTT---------G-CGAATAGGAA---AACT-----GCAAAAA----ATaaaatacct
gi|17 : acatactgtatatacgtgcgattggaaattttgcgaattgaatagatccattagtggtagcaaattacattctgcgtttccaatacctgaagttgctttacaccattatacacgcaattttgctattgtaT-----CTGCGA-TCGT-AA-TTTTT--GTGGA-TTTT---------C-CTAACC-GCG---AAAT-T-CGGCAAat
gi|19 : ttccaattttcgagacacgttgtcattactttttgatcaaccttcgtatatatagTGTGA-TAGT-AA-TTTTT--GCGGATTTCT---------C-CCAACCC--ACTTAATT-T-T-GCAAATC----ATGGACAACCATAGccaaaaaaat
3 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|15 ): ATTTTTTTTCAACTTTTAATGTGCAAATGTGCAAAATGGTAATTTCACAGCATGCATATCCGAATGTAGGTATAAAAACCAAACATCACTTATACGTTGAAATTGTTTGACATTAAAGATAATAAA
Unaligned ( gi|18 ): GGGTAGTTTCTGTGGTTGGAATTTTTTGTGATTTATTCATAAATGGTAGCACATTTCCAATTTCTTTATATTTAAATGTACCTGTTGTGTATACATATACA
Unaligned ( gi|20 ): CAAATGTACCATGCTATTATGGGACAGTGTAAAATAAAT
Alignments
lowQualScore : 11 1111111 55555555555555555555555555555555555555555555555555555 222222222222222222222222222 222222
lowQualScore : 55 7777 2 3 33 0 2 33 666 5555 66666 2222222 3 1 2 2 444 444 77777777777 2 2 33 2 3 00000000000000000000000000000000000000000000000000000 3 3 44 0 777777777777777777777777777 3 3 000000 3
lowQualScore : .. .... . . .. . . .. ... .... ..... ....... . . . . ... ... ........... . . .. . . ..................................................... . . .. . ........................... . . ...... .
lowQualScore : 00 8888 9 1 99 6 7 77 333 7777 77777 0000000 4 9 8 7 777 444 22222222222 5 5 44 5 1 77777777777777777777777777777777777777777777777777777 1 1 22 6 777777777777777777777777777 1 1 111111 3
consensus : CACTACA--TAC--C-GTATA-AC--GGGTATTTTCT-GCGGTTGGAA-N-TTTTTGCGAT----TCGA-----TC---CN-TAAANGGTAGCAAAT-TATAT---TCTGCGTTTCCAATTTC---TGCG----G----TT-G-CAT--TA-TAC-CTA---------ACC-AT--A------CNT--G-TACNTG---AT-----T-----TTTGCGA-TTGTAA-TTTTT--GCGGATTTTTC---------CTATCC-CG-NAA-A-TT-CCGCA-AATA----A-TGGACAACCGCAG
Reference ( family-2793 ) : CACTACA--TAC--C-GTATA-AC--GGGTATTTTCT-GCGGGNGGAA-N-TTTTTGCGAT----TCGA-----TN---CC-TAAANGGTAGCNAAT-TATAT---TCTGCGTTTCCAATTTC---TGCG----G----TT-G-CAT--TA-TAC-CTA---------NCC-AT--A------CNT--G-TACNTG---AT-----T-----TTTGCGA-TTGTAA-TTTTT--GCGGATTTTTC---------CTATCC-CG-NAA-A-NT-CCGCA-AA-A----A-TGGACAACCGCAG
gi|1 : TCT-GCGTTTGGAA-T-TTTTTGCAATCTTATC-A-----TT---CTGTGAATAGTAGCAAAT-TATAT---TTTGCATTTCAAATTTC---TGC----------TT-G-CAT--TA-TAT-ATG---------TAC-CT--A------TAT--A-TATATA---A------------TTTGTGA-TTGTAA-GATTT--GCTGAATTTTC---------TTATCT-GG-GAA----T-CCACA-AA-A----AGTAGACAATCACAG
gi|10 : aatcaagtatggacaatcaggacataaaacaaatgctgtataaaAAAAAGTAACAAAT-CATGT---TCTTTGTTTCCAATTTT---TGAG----G----TT-G-CAT--CA-TAC-TTATAAGTACCTACT-AT---------CAT--G-TACAGGT--ATCAATAT-----TTTGCGA-TTGTAA-TTTTT--GTGGATTTTTC---------T--TCA-CG-A-----------CA-AA-A----C-TAGACAACTGCAGaaaatact
gi|11 : gaattttctttggttggtttcgatttaatctgtaaattattataACA--TAC--T-GTATATAC--G---------T-GCGATTGGAA-A-TTTT-GCGAA----TTGAATAGATC---CA-TTAGTGGTAGCAAAT-TACAT---TCTGCGTTTCCAATACC---TGAA----G----TT-G-CTT--TA-CAC-C-----------ATT-AT--A------C-------ACGCA---A------T-----TTTGCTA-TTGTAATTTTTT--GCAG--TTTTC---------CTATTC-GC-AAA-A-TT-CTGCA-AA-A----A-TTGACAATCGCAGaaaatacct
gi|12 : CTACA--CGCATT-ATATA-AC--AAGTATTTTCTTGCAG-TGGAA-A-TTTTTGTGAT----TTGA-----TAATCCC-TTAACGGTAGGAAAT-TATAT---TCTGCGCTTCTGATTTC---TTCG----A----TT-G-CAT--GA-TAaaaat
gi|13 : tgtacatgttattataattatagtgt--TAC--A-GTATA-ACTGAGATATTTACT-GCGGGTGGAA-A-TCTTTGAAAT----CCAA-----TA---CC-TAAAAGGCTGCAAAT-CAT-----------------ATCTC---TGTG----G----TT-G-CAT--TA-TA---TA-----------C-AT--C------TCT--T-TACCTG----T-----G-----TAT-CG--TTGTAT-TTTTT--GCGGATTTTTC---------CT--------------TT-CCGCA-GATA----A-TGAACACCCGCaggatgcatttatgtagagaatgtttacacaaatgat
gi|14 : AC--T-GTTTA-AC--TGGTATTTTCT-GTGATTGAAA-A-TTTTTGCGAT----TTGA-----TC--------AAT--TAG--AATGTCTAC---TCTGCATTTCCAAATTC---TGCA----A----TT-G-CAT--TA-ttaaaa
gi|16 : attcagaagtgtaaATA--TGT--C-ATAAA-AT--GGAGATTTTCT--TGGATTGAA-CATTTTTGTGAT----TTGA-----TT---AC-AAAAAGATAGCAAAT-TATAT---ATTCCGCTTCCAATTTT---TGTG----G----TT-G-CAT--TA-TAcccgtgtaccacaaatatcatttaatggatatacaagatgtttaggaaaaa
gi|17 : tctgaaatattatcTTCCAATTTT---CGAGACACG----TT-GTCAT--TACTTT-TTG---------ATC-A---A------CCTTCG-TATAT----ATA----G-----TCTGCGA-TCGTAA-TTTTT--GTGGA-TTTTC---------CTAACCGCG--AA-A-TT-CGGCA-A
gi|18 : --GGGTAGTTTCT-GTGGTTGGAA-T-TTTTTGTGAT----TT-A-----TT---CA-TAAATGGTAGCA----------------CATTTCCAATTTC---T-------------------T--TA-TAT-TTA---------AAT-GT--A------CCT--G-Tccaaaaaaat
gi|19 : TGTGA-TAGTAA-TTTTT--GCGGATTTCTC---------CCAACC-CACTTA-A-TT-TTGCA-AATC----A-TGGACAACCATAGtgtgtatacatataca
gi|2 : CTATAGCTAC--C-ATAGA-AG--GGGCATTTTCT-ATGGTTGGAA-A-TGTTTGCGAT----TTGA-----GC---CA-TGAATGGTAGCCATT-TATGT---TCTGCGCTTCCAATTTC---TGTG----G----TT-A-GAT--TG-TACAGTA---------CCC-GT--ATGTATCTAT--G-TGCATGTAAATATA--T-----TTTGTGATTTATAA-TTTTTTCTCGAATTTTTC---------CAAT-C-TG-CAA-ATTT-CCACA-AATAATGCA-TGGACAACCACAG
gi|3 : CACTACA--TAC--CTGTA-A-AC--ACGTATTTTCT-GCGG-AGGAT-T-TTTTTGCGAT----CCGA-----TA---TC-TAAA----AGCGGTT-TATATATTTCTGCAGTTCCAATTTC---TGCG----G----TTTG-CAG--TA-TAC-CTA---------ACC-AT--A------CTT--G-TACTTG---AT-----T-----TTTGCGA-TTGTAA-TTTTT--GCGGATTTTT----------CTATCC-TG-AAA-A-GT-TCGCA-AATA----A-TGGACAACCGTAGaaa
gi|4 : aatagcttggacaa--TAC--T-GTATA-GT--GGAAATATTTT-GCAGCTGGAA-A-TTTTTGCGAT----TTGA-----TC---TT-TAAATGGTAGCAAAT-TTTAC---CCTGCTTCTCCAATTTC---TGTG----G----TT-G-CATTATA-TAT-CTA---------TAC-AT--G------CAT--G-CATTTA---TC-----T-----TTTGCAA-ATGTGA-ATTTT--GTGGATTTTTCAATTTTTCTTTAT-C-CG-CAATA-GT-CCCCC-AA-A----A-TGAACTACCat
gi|5 : TAAA--TAC--T-GTACA-AC--GGGTCATTTCT-GCGGTCGCAA-A-ATTTTGCAAT----CCGA-----TT---CC-AAAAAGGTAGTAATT-TACAA---TATGCGTTTCTAATTTC---CCAA----G----TT-G-TAT--CA-TGC-CTA---------TCT-AT--A------CCTA-G-TATATGTT-AT-----A-----ATTGCGA-TTGTAA-TTTTT--GTGGATCTTTC---------CTATCC-GC-AAA-A-TT-CCGCAGGG-A----A-TGGGCAACCACaaaaacatc
gi|6 : a--TAC--T-GTACA-AT--GAGCATTTTCT-GCGGTTTGAA-T-TATTTGCAAT----TTGA-----TC---CA-TAAATGGTAGCAATT-TATAT---TCT--GTTTCCAATTCCTTTTGCA----GTGAATT-G-AGT--TA-TAC-CTATATGC----ACCAATGAG------CAT--G-TACATG----------------TATATGA-TTG--A-TTTTT--GT-GATTTTT-----------TA--C-TG--------T-CTGCA-AA-A----A-TGGACAA--GCAGtgaaa
gi|7 : tatacgtACA--TAC--C-GTATA-AT--GGATACTTTCT-GAGATTGGAATT-TTTTTGCGAT----TTAA-----TT---CA-TAAATGGTAGCCA------AT---TCTGCATTTCCAATTTC---TACA----G----CT-G-CA---TG-TAC-CGA---------T---GT--A------CAT--GTTACTAC---AT-----TTAAAGTTTGCGA-TTGAAA-TTTTT--GGAAAAATTTT---------CTAT-C-TG-CAA-A-GTCCCACA-AA-AT---A-TGAACAGCCACAagaaacta
gi|8 : atataaCACTACA--TAC--C-GTATA-AC--ACGTATTTTCT-GCGGGAGGAT-T-TTTTTGCGAT----CCGA-----TA---TC-TAAAAGGCGGTTTAT-TATAT---TCTGCAGTTCCAATTTC---TGCG----G----TT-G-CAG--TA-TAC-CTA---------ACC-AT--A------CTT--G-TACTTG---AT-----T-----TTTGCGA-TTGTAA-TTTTT--GCGGATTTTTT---------CTATCC-TG-AAA-A-GT-TCGCA-AATA----A-TGGACAACCGTAGatt
gi|9 : AC--T-GTAAA-AC--GAGTATTTTCT-GCGGGTGAAA-A-TTTTTGCGAT----CCGA-----TC---AA-TAAAAAGTA
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|15 ): ATTTTTTTTCAACTTTTAATGTGCAAATGTGCAAAATGGTAATTTCACAGCATGCATATCCGAATGTAGGTATAAAAACCAAACATCACTTATACGTTGAAATTGTTTGACATTAAAGATAATAAA
Unaligned ( gi|20 ): CAAATGTACCATGCTATTATGGGACAGTGTAAAATAAAT
Alignments
lowQualScore : 111111111111 555555555555555555555555555555555555555555555555555 222222222222222222222222222 111111
lowQualScore : 55 7777 2 3 33 0 2 44 5555 66666 666666 555555555555 2 2 444 1 8888888888 5555 2 2 33 2 3 111111111111111111111111111111111111111111111111111 3 3 44 0 888888888888888888888888888 555555
lowQualScore : .. .... . . .. . . .. .... ..... ...... ............ . . ... . .......... .... . . .. . . ................................................... . . .. . ........................... ......
lowQualScore : 00 8888 9 1 99 6 5 44 3333 22222 222222 333333333333 8 7 777 4 4444444444 3333 5 5 44 5 1 666666666666666666666666666666666666666666666666666 1 1 22 6 666666666666666666666666666 999999
consensus : CACTACA--TAC--C-GTATA-AC--GGGTATTTTCT-GCGGTTGGAA-ATTTTTGCGAT----TCGA-----T---CCNTAAAT-----------GGTAGCAAAT-TATAT---TCTGCGTTTCCAATTTCT---GCG----GT----T-G-CAT--TA-TAC-CTA---------ACCA-TA------CNT--G-TACNTG---AT-----T-----TTTGCGA-TTGTAA-TTTTT--GCGGATTTTTC---------CTATCC-CG-NAA-A-TTCCGCAAATA----ATGGACAACCGCAG
Reference ( family-2793 ) : CACTACA--TAC--C-GTATA-AC--GGGTATTTTCT-GCGGTTGGAA-NTTTTTGCGAT----TCGA-----T---CCNTAAAN-----------GGTAGCAAAT-TATAT---TCTGCGTTTCCAATTTCT---GCG----GT----T-G-CAT--TA-TAC-CTA---------ACCA-TA------CNT--G-TACNTG---AT-----T-----TTTGCGA-TTGTAA-TTTTT--GCGGATTTTTC---------CTATCC-CG-NAA-A-TTCCGCAAATA----ATGGACAACCGCAG
gi|1 : TCT-GCGTTTGGAA-TTTTTTGCAATCTTATCAT-----T---CTGTGAAT-----------AGTAGCAAAT-TATAT---TTTGCATTTCAAATTTCT---GC------T----T-G-CAT--TA-TAT-ATGT--------ACC--TA------TAT--A-TATATA---A------------TTTGTGA-TTGTAA-GATTT--GCTGAATTTTC---------TTATCT-GG-GAA----TCCACAAAAA----GTAGACAATCACAG
gi|10 : aatcaagtatggacaatcaggacataaaacaaatgctgtataaaATTTTCT-TTGGTTGG------TTT-CGAT----TTAA-----T---CTGTAAATTATTATAAAAAAGTAACAAAT-CATGT---TCTTTGTTTCCAATTTTT---GAG----GT----T-G-CAT--CA-TAC-TTATAAGTACCTACTA-T-------CAT--G-TACAGGT--ATCAATAT-----TTTGCGA-TTGTAA-TTTTT--GTGGATTTTTC---------T--TCA-CG-A----------CAAA-A----CTAGACAACTGCAGaaaatact
gi|11 : gaACA--TAC--T-GTATATAC--G---------T-GCGATTGGAA-ATTTT-GCGAA----TTGAATAGAT---CCATTAGT-----------GGTAGCAAAT-TACAT---TCTGCGTTTCCAATACCT---GAA----GT----T-G-CTT--TA-CAC-C-----------ATTA-TA------C-------ACGCA---A------T-----TTTGCTA-TTGTAATTTTTT--GCAG--TTTTC---------CTATTC-GC-AAA-A-TTCTGCAAA-A----ATTGACAATCGCAGaaaatacct
gi|12 : CTACA--CGCATT-ATATA-AC--AAGTATTTTCTTGCAGT-GGAA-ATTTTTGTGAT----TTGA-----TAATCCCTTAAC-----------GGTAGGAAAT-TATAT---TCTGCGCTTCTGATTTCT---TCG----AT----T-G-CAT--GA-TAaaaat
gi|13 : tgtacatgttattataattatagtgt--TAC--A-GTATA-ACTGAGATATTTACT-GCGGGTGGAA-ATCTTTGAAAT----CCAA-----T---ACCTAAAA-----------GGCTGCAAAT-CATAT---C--------------TCT---GTG----GT----T-G-CAT--TA-TA---TA-----------CA-TC------TCT--T-TACCTG----T-----G-----TAT-CG--TTGTAT-TTTTT--GCGGATTTTTC---------CT--------------TTCCGCAGATA----ATGAACACCCGCaggatgcatttatgtagagaatgtttacacaaatgat
gi|14 : AC--T-GTTTA-AC--TGGTATTTTCT-GTGATTGAAA-ATTTTTGCGAT----TTGA-----T---C----AAT-------------TAG--AATGTCTAC---TCTGCATTTCCAAATTCT---GCA----AT----T-G-CAT--TA-ttaaaa
gi|16 : attcagaagtgtaaATA--TGT--C-ATAAA-AT--GGAGATTTTCT-TGGATTGAAC-ATTTTTGTGAT----TTGA-----T---TACAAAAA-----------GATAGCAAAT-TATAT---ATTCCGCTTCCAATTTTT---GTG----GT----T-G-CAT--TA-TAcccgtgtaccacaaatatcatttaatggatatacaagatgtttaggaaaaa
gi|17 : tctgaaatattatcTTCCAATTTTC---GAGACACGT----T-GTCAT--TACTTT-TTG---------ATCA--A------CCTTCG-TATAT----ATA----G-----TCTGCGA-TCGTAA-TTTTT--GTGGA-TTTTC---------CTAACCGCG--AA-A-TTCGGCAA
gi|18 : --GGGTAGTTTCT-GTGGTTGGAA-TTTTTTGTGAT----TT-A-----T---TCATAAAT-----------GGTAGCA----------------CATTTCCAATTTCT----------------------T--TA-TAT-TTA---------AATG-TA------CCT--G-Tccaaaaaaat
gi|19 : TGTGA-TAGTAA-TTTTT--GCGGATTTCTC---------CCAACC-CACTTA-A-TTTTGCAAATC----ATGGACAACCATAGtgtgtatacatataca
gi|2 : CTATAGCTAC--C-ATAGA-AG--GGGCATTTTCT-ATGGTTGGAA-ATGTTTGCGAT----TTGA-----G---CCATGAAT-----------GGTAGCCATT-TATGT---TCTGCGCTTCCAATTTCT---GTG----GT----T-A-GAT--TG-TACAGTA---------CCCG-TATGTATCTAT--G-TGCATGTAAATATA--T-----TTTGTGATTTATAA-TTTTTTCTCGAATTTTTC---------CAAT-C-TG-CAA-ATTTCCACAAATAATGCATGGACAACCACAG
gi|3 : CACTACA--TAC--CTGTA-A-AC--ACGTATTTTCT-GCGGA-GGAT-TTTTTTGCGAT----CCGA-----T---ATCTAAA---------------AGCGGTT-TATATATTTCTGCAGTTCCAATTTCT---GCG----GT----TTG-CAG--TA-TAC-CTA---------ACCA-TA------CTT--G-TACTTG---AT-----T-----TTTGCGA-TTGTAA-TTTTT--GCGGATTTTT----------CTATCC-TG-AAA-A-GTTCGCAAATA----ATGGACAACCGTAGaaa
gi|4 : aatagcttggacaa--TAC--T-GTATA-GT--GGAAATATTTT-GCAGCTGGAA-ATTTTTGCGAT----TTGA-----T---CTTTAAAT-----------GGTAGCAAAT-TTTAC---CCTGCTTCTCCAATTTCT---GTG----GT----T-G-CATTATA-TAT-CTA---------TACA-TG------CAT--G-CATTTA---TC-----T-----TTTGCAA-ATGTGA-ATTTT--GTGGATTTTTCAATTTTTCTTTAT-C-CG-CAATA-GTCCCCCAA-A----ATGAACTACCat
gi|5 : TAAA--TAC--T-GTACA-AC--GGGTCATTTCT-GCGGTCGCAA-AATTTTGCAAT----CCGA-----T---TCCAAAAA-----------GGTAGTAATT-TACAA---TATGCGTTTCTAATTTCC---CAA----GT----T-G-TAT--CA-TGC-CTA---------TCTA-TA------CCTA-G-TATATGTT-AT-----A-----ATTGCGA-TTGTAA-TTTTT--GTGGATCTTTC---------CTATCC-GC-AAA-A-TTCCGCAGGGA----ATGGGCAACCACaaaaacatc
gi|6 : a--TAC--T-GTACA-AT--GAGCATTTTCT-GCGGTTTGAA-TTATTTGCAAT----TTGA-----T---CCATAAAT-----------GGTAGCAATT-TATAT---TCTG--TTTCCAATTCCTTTTGCA----GTGAATT-G-AGT--TA-TAC-CTATATGC----ACCAATGAG----CAT--G-TACATG----------------TATATGA-TTG--A-TTTTT--GTG-ATTTTT-----------TA--C-TG--------TCTGCAAA-A----ATGGACAA--GCAGtgaaa
gi|7 : tatacgtACA--TAC--C-GTATA-AT--GGATACTTTCT-GAGATTGGAATTTTTTTGCGAT----TTAA-----T---TCATAAAT-----------GGTAGCCA------AT---TCTGCATTTCCAATTTCT---ACA----GC----T-G-CA---TG-TAC-CGA-----------TG-TA------CAT--GTTACTAC---AT-----TTAAAGTTTGCGA-TTGAAA-TTTTT--GGAAAAATTTT---------CTAT-C-TG-CAA-AGTCCCACAAAAT----ATGAACAGCCACAagaaacta
gi|8 : atataaCACTACA--TAC--C-GTATA-AC--ACGTATTTTCT-GCGGGAGGAT-TTTTTTGCGAT----CCGA-----T---ATCTAAAA-----------GGCGGTTTAT-TATAT---TCTGCAGTTCCAATTTCT---GCG----GT----T-G-CAG--TA-TAC-CTA---------ACCA-TA------CTT--G-TACTTG---AT-----T-----TTTGCGA-TTGTAA-TTTTT--GCGGATTTTTT---------CTATCC-TG-AAA-A-GTTCGCAAATA----ATGGACAACCGTAGatt
gi|9 : AC--T-GTAAA-AC--GAGTATTTTCT-GCGGGTGAAA-ATTTTTGCGAT----CCGA-----T---CAATAAAA-----------AGTA
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|15 ): ATTTTTTTTCAACTTTTAATGTGCAAATGTGCAAAATGGTAATTTCACAGCATGCATATCCGAATGTAGGTATAAAAACCAAACATCACTTATACGTTGAAATTGTTTGACATTAAAGATAATAAA
Unaligned ( gi|20 ): CAAATGTACCATGCTATTATGGGACAGTGTAAAATAAAT
Alignments
lowQualScore : 111111111111 55555555555555555555555555555555555555555555555555555 222222222222222222222222222 111111
lowQualScore : 55 7777 2 3 33 0 2 44 5555 66666 666666 555555555555 2 2 444 444 77777777777 2 2 33 2 3 11111111111111111111111111111111111111111111111111111 3 3 44 0 888888888888888888888888888 555555
lowQualScore : .. .... . . .. . . .. .... ..... ...... ............ . . ... ... ........... . . .. . . ..................................................... . . .. . ........................... ......
lowQualScore : 00 8888 9 1 99 6 5 88 3333 22222 222222 000000000000 8 7 777 444 22222222222 5 5 44 5 1 66666666666666666666666666666666666666666666666666666 1 1 22 6 666666666666666666666666666 999999
consensus : CACTACA--TAC--C-GTATA-AC--GGGTATTTTCT-GCGGTTGGAA-ATTTTTGCGAT----TCGA-----T---CCNTAAAT-----------GGTAGCAAAT-TATAT---TCTGCGTTTCCAATTTC---TGCG----G----TT-G-CAT--TA-TAC-CTA---------ACC-AT--A------CNT--G-TACNTG---AT-----T-----TTTGCGA-TTGTAA-TTTTT--GCGGATTTTTC---------CTATCC-CG-NAA-A-TTCCGCAAATA----ATGGACAACCGCAG
Reference ( family-2793 ) : CACTACA--TAC--C-GTATA-AC--GGGTATTTTCT-GCGGTTGGAA-ATTTTTGCGAT----TCGA-----T---CCNTAAAT-----------GGTAGCAAAT-TATAT---TCTGCGTTTCCAATTTC---TGCG----G----TT-G-CAT--TA-TAC-CTA---------ACC-AT--A------CNT--G-TACNTG---AT-----T-----TTTGCGA-TTGTAA-TTTTT--GCGGATTTTTC---------CTATCC-CG-NAA-A-TTCCGCAAATA----ATGGACAACCGCAG
gi|1 : TCT-GCGTTTGGAA-TTTTTTGCAATCTTATCAT-----T---CTGTGAAT-----------AGTAGCAAAT-TATAT---TTTGCATTTCAAATTTC---TGC----------TT-G-CAT--TA-TAT-ATGT--------ACC--T--A------TAT--A-TATATA---A------------TTTGTGA-TTGTAA-GATTT--GCTGAATTTTC---------TTATCT-GG-GAA----TCCACAAAAA----GTAGACAATCACAG
gi|10 : aatcaagtatggacaatcaggacataaaacaaatgctgtataaaATTTTCT-TTGGTTGG------TTT-CGAT----TTAA-----T---CTGTAAATTATTATAAAAAAGTAACAAAT-CATGT---TCTTTGTTTCCAATTTT---TGAG----G----TT-G-CAT--CA-TAC-TTATAAGTACCTACT-AT---------CAT--G-TACAGGT--ATCAATAT-----TTTGCGA-TTGTAA-TTTTT--GTGGATTTTTC---------T--TCA-CG-A----------CAAA-A----CTAGACAACTGCAGaaaatact
gi|11 : gaACA--TAC--T-GTATATAC--G---------T-GCGATTGGAA-ATTTT-GCGAA----TTGAATAGAT---CCATTAGT-----------GGTAGCAAAT-TACAT---TCTGCGTTTCCAATACC---TGAA----G----TT-G-CTT--TA-CAC-C-----------ATT-AT--A------C-------ACGCA---A------T-----TTTGCTA-TTGTAATTTTTT--GCAG--TTTTC---------CTATTC-GC-AAA-A-TTCTGCAAA-A----ATTGACAATCGCAGaaaatacct
gi|12 : CTACA--CGCATT-ATATA-AC--AAGTATTTTCTTGCAGT-GGAA-ATTTTTGTGAT----TTGA-----TAATCCCTTAAC-----------GGTAGGAAAT-TATAT---TCTGCGCTTCTGATTTC---TTCG----A----TT-G-CAT--GA-TAaaaat
gi|13 : tgtacatgttattataattatagtgt--TAC--A-GTATA-ACTGAGATATTTACT-GCGGGTGGAA-ATCTTTGAAAT----CCAA-----T---ACCTAAAA-----------GGCTGCAAAT-CAT-----------------ATCTC---TGTG----G----TT-G-CAT--TA-TA---TA-----------C-AT--C------TCT--T-TACCTG----T-----G-----TAT-CG--TTGTAT-TTTTT--GCGGATTTTTC---------CT--------------TTCCGCAGATA----ATGAACACCCGCaggatgcatttatgtagagaatgtttacacaaatgat
gi|14 : AC--T-GTTTA-AC--TGGTATTTTCT-GTGATTGAAA-ATTTTTGCGAT----TTGA-----T---C----AAT-------------TAG--AATGTCTAC---TCTGCATTTCCAAATTC---TGCA----A----TT-G-CAT--TA-ttaaaa
gi|16 : attcagaagtgtaaATA--TGT--C-ATAAA-AT--GGAGATTTTCT-TGGATTGAAC-ATTTTTGTGAT----TTGA-----T---TACAAAAA-----------GATAGCAAAT-TATAT---ATTCCGCTTCCAATTTT---TGTG----G----TT-G-CAT--TA-TAcccgtgtaccacaaatatcatttaatggatatacaagatgtttaggaaaaa
gi|17 : tctgaaatattatcTTCCAATTTT---CGAGACACG----TT-GTCAT--TACTTT-TTG---------ATC-A---A------CCTTCG-TATAT----ATA----G-----TCTGCGA-TCGTAA-TTTTT--GTGGA-TTTTC---------CTAACCGCG--AA-A-TTCGGCAA
gi|18 : --GGGTAGTTTCT-GTGGTTGGAA-TTTTTTGTGAT----TT-A-----T---TCATAAAT-----------GGTAGCA----------------CATTTCCAATTTC---T-------------------T--TA-TAT-TTA---------AAT-GT--A------CCT--G-Tccaaaaaaat
gi|19 : TGTGA-TAGTAA-TTTTT--GCGGATTTCTC---------CCAACC-CACTTA-A-TTTTGCAAATC----ATGGACAACCATAGtgtgtatacatataca
gi|2 : CTATAGCTAC--C-ATAGA-AG--GGGCATTTTCT-ATGGTTGGAA-ATGTTTGCGAT----TTGA-----G---CCATGAAT-----------GGTAGCCATT-TATGT---TCTGCGCTTCCAATTTC---TGTG----G----TT-A-GAT--TG-TACAGTA---------CCC-GT--ATGTATCTAT--G-TGCATGTAAATATA--T-----TTTGTGATTTATAA-TTTTTTCTCGAATTTTTC---------CAAT-C-TG-CAA-ATTTCCACAAATAATGCATGGACAACCACAG
gi|3 : CACTACA--TAC--CTGTA-A-AC--ACGTATTTTCT-GCGGA-GGAT-TTTTTTGCGAT----CCGA-----T---ATCTAAA---------------AGCGGTT-TATATATTTCTGCAGTTCCAATTTC---TGCG----G----TTTG-CAG--TA-TAC-CTA---------ACC-AT--A------CTT--G-TACTTG---AT-----T-----TTTGCGA-TTGTAA-TTTTT--GCGGATTTTT----------CTATCC-TG-AAA-A-GTTCGCAAATA----ATGGACAACCGTAGaaa
gi|4 : aatagcttggacaa--TAC--T-GTATA-GT--GGAAATATTTT-GCAGCTGGAA-ATTTTTGCGAT----TTGA-----T---CTTTAAAT-----------GGTAGCAAAT-TTTAC---CCTGCTTCTCCAATTTC---TGTG----G----TT-G-CATTATA-TAT-CTA---------TAC-AT--G------CAT--G-CATTTA---TC-----T-----TTTGCAA-ATGTGA-ATTTT--GTGGATTTTTCAATTTTTCTTTAT-C-CG-CAATA-GTCCCCCAA-A----ATGAACTACCat
gi|5 : TAAA--TAC--T-GTACA-AC--GGGTCATTTCT-GCGGTCGCAA-AATTTTGCAAT----CCGA-----T---TCCAAAAA-----------GGTAGTAATT-TACAA---TATGCGTTTCTAATTTC---CCAA----G----TT-G-TAT--CA-TGC-CTA---------TCT-AT--A------CCTA-G-TATATGTT-AT-----A-----ATTGCGA-TTGTAA-TTTTT--GTGGATCTTTC---------CTATCC-GC-AAA-A-TTCCGCAGGGA----ATGGGCAACCACaaaaacatc
gi|6 : a--TAC--T-GTACA-AT--GAGCATTTTCT-GCGGTTTGAA-TTATTTGCAAT----TTGA-----T---CCATAAAT-----------GGTAGCAATT-TATAT---TCT--GTTTCCAATTCCTTTTGCA----GTGAATT-G-AGT--TA-TAC-CTATATGC----ACCAATGAG------CAT--G-TACATG----------------TATATGA-TTG--A-TTTTT--GT-GATTTTT-----------TA--C-TG--------TCTGCAAA-A----ATGGACAA--GCAGtgaaa
gi|7 : tatacgtACA--TAC--C-GTATA-AT--GGATACTTTCT-GAGATTGGAATTTTTTTGCGAT----TTAA-----T---TCATAAAT-----------GGTAGCCA------AT---TCTGCATTTCCAATTTC---TACA----G----CT-G-CA---TG-TAC-CGA-----------T-GT--A------CAT--GTTACTAC---AT-----TTAAAGTTTGCGA-TTGAAA-TTTTT--GGAAAAATTTT---------CTAT-C-TG-CAA-AGTCCCACAAAAT----ATGAACAGCCACAagaaacta
gi|8 : atataaCACTACA--TAC--C-GTATA-AC--ACGTATTTTCT-GCGGGAGGAT-TTTTTTGCGAT----CCGA-----T---ATCTAAAA-----------GGCGGTTTAT-TATAT---TCTGCAGTTCCAATTTC---TGCG----G----TT-G-CAG--TA-TAC-CTA---------ACC-AT--A------CTT--G-TACTTG---AT-----T-----TTTGCGA-TTGTAA-TTTTT--GCGGATTTTTT---------CTATCC-TG-AAA-A-GTTCGCAAATA----ATGGACAACCGTAGatt
gi|9 : AC--T-GTAAA-AC--GAGTATTTTCT-GCGGGTGAAA-ATTTTTGCGAT----CCGA-----T---CAATAAAA-----------AGTA
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|15 ): ATTTTTTTTCAACTTTTAATGTGCAAATGTGCAAAATGGTAATTTCACAGCATGCATATCCGAATGTAGGTATAAAAACCAAACATCACTTATACGTTGAAATTGTTTGACATTAAAGATAATAAA
Unaligned ( gi|20 ): CAAATGTACCATGCTATTATGGGACAGTGTAAAATAAAT
Alignments
lowQualScore : 111111111111 55555555555555555555555555555555555555555555555555555 222222222222222222222222222 111111
lowQualScore : 55 7777 2 3 33 0 2 44 5555 66666 666666 555555555555 2 2 444 444 77777777777 2 2 33 2 3 11111111111111111111111111111111111111111111111111111 3 3 44 0 888888888888888888888888888 555555
lowQualScore : .. .... . . .. . . .. .... ..... ...... ............ . . ... ... ........... . . .. . . ..................................................... . . .. . ........................... ......
lowQualScore : 00 8888 9 1 99 6 5 88 3333 22222 222222 000000000000 8 7 777 444 22222222222 5 5 44 5 1 66666666666666666666666666666666666666666666666666666 1 1 22 6 666666666666666666666666666 999999
consensus : CACTACA--TAC--C-GTATA-AC--GGGTATTTTCT-GCGGTTGGAA-ATTTTTGCGAT----TCGA-----T---CCNTAAAT-----------GGTAGCAAAT-TATAT---TCTGCGTTTCCAATTTC---TGCG----G----TT-G-CAT--TA-TAC-CTA---------ACC-AT--A------CNT--G-TACNTG---AT-----T-----TTTGCGA-TTGTAA-TTTTT--GCGGATTTTTC---------CTATCC-CG-NAA-A-TTCCGCAAATA----ATGGACAACCGCAG
Reference ( family-2793 ) : CACTACA--TAC--C-GTATA-AC--GGGTATTTTCT-GCGGTTGGAA-ATTTTTGCGAT----TCGA-----T---CCNTAAAT-----------GGTAGCAAAT-TATAT---TCTGCGTTTCCAATTTC---TGCG----G----TT-G-CAT--TA-TAC-CTA---------ACC-AT--A------CNT--G-TACNTG---AT-----T-----TTTGCGA-TTGTAA-TTTTT--GCGGATTTTTC---------CTATCC-CG-NAA-A-TTCCGCAAATA----ATGGACAACCGCAG
gi|1 : TCT-GCGTTTGGAA-TTTTTTGCAATCTTATCAT-----T---CTGTGAAT-----------AGTAGCAAAT-TATAT---TTTGCATTTCAAATTTC---TGC----------TT-G-CAT--TA-TAT-ATGT--------ACC--T--A------TAT--A-TATATA---A------------TTTGTGA-TTGTAA-GATTT--GCTGAATTTTC---------TTATCT-GG-GAA----TCCACAAAAA----GTAGACAATCACAG
gi|10 : aatcaagtatggacaatcaggacataaaacaaatgctgtataaaATTTTCT-TTGGTTGG------TTT-CGAT----TTAA-----T---CTGTAAATTATTATAAAAAAGTAACAAAT-CATGT---TCTTTGTTTCCAATTTT---TGAG----G----TT-G-CAT--CA-TAC-TTATAAGTACCTACT-AT---------CAT--G-TACAGGT--ATCAATAT-----TTTGCGA-TTGTAA-TTTTT--GTGGATTTTTC---------T--TCA-CG-A----------CAAA-A----CTAGACAACTGCAGaaaatact
gi|11 : gaACA--TAC--T-GTATATAC--G---------T-GCGATTGGAA-ATTTT-GCGAA----TTGAATAGAT---CCATTAGT-----------GGTAGCAAAT-TACAT---TCTGCGTTTCCAATACC---TGAA----G----TT-G-CTT--TA-CAC-C-----------ATT-AT--A------C-------ACGCA---A------T-----TTTGCTA-TTGTAATTTTTT--GCAG--TTTTC---------CTATTC-GC-AAA-A-TTCTGCAAA-A----ATTGACAATCGCAGaaaatacct
gi|12 : CTACA--CGCATT-ATATA-AC--AAGTATTTTCTTGCAGT-GGAA-ATTTTTGTGAT----TTGA-----TAATCCCTTAAC-----------GGTAGGAAAT-TATAT---TCTGCGCTTCTGATTTC---TTCG----A----TT-G-CAT--GA-TAaaaat
gi|13 : tgtacatgttattataattatagtgt--TAC--A-GTATA-ACTGAGATATTTACT-GCGGGTGGAA-ATCTTTGAAAT----CCAA-----T---ACCTAAAA-----------GGCTGCAAAT-CAT-----------------ATCTC---TGTG----G----TT-G-CAT--TA-TA---TA-----------C-AT--C------TCT--T-TACCTG----T-----G-----TAT-CG--TTGTAT-TTTTT--GCGGATTTTTC---------CT--------------TTCCGCAGATA----ATGAACACCCGCaggatgcatttatgtagagaatgtttacacaaatgat
gi|14 : AC--T-GTTTA-AC--TGGTATTTTCT-GTGATTGAAA-ATTTTTGCGAT----TTGA-----T---C----AAT-------------TAG--AATGTCTAC---TCTGCATTTCCAAATTC---TGCA----A----TT-G-CAT--TA-ttaaaa
gi|16 : attcagaagtgtaaATA--TGT--C-ATAAA-AT--GGAGATTTTCT-TGGATTGAAC-ATTTTTGTGAT----TTGA-----T---TACAAAAA-----------GATAGCAAAT-TATAT---ATTCCGCTTCCAATTTT---TGTG----G----TT-G-CAT--TA-TAcccgtgtaccacaaatatcatttaatggatatacaagatgtttaggaaaaa
gi|17 : tctgaaatattatcTTCCAATTTT---CGAGACACG----TT-GTCAT--TACTTT-TTG---------ATC-A---A------CCTTCG-TATAT----ATA----G-----TCTGCGA-TCGTAA-TTTTT--GTGGA-TTTTC---------CTAACCGCG--AA-A-TTCGGCAA
gi|18 : --GGGTAGTTTCT-GTGGTTGGAA-TTTTTTGTGAT----TT-A-----T---TCATAAAT-----------GGTAGCA----------------CATTTCCAATTTC---T-------------------T--TA-TAT-TTA---------AAT-GT--A------CCT--G-Tccaaaaaaat
gi|19 : TGTGA-TAGTAA-TTTTT--GCGGATTTCTC---------CCAACC-CACTTA-A-TTTTGCAAATC----ATGGACAACCATAGtgtgtatacatataca
gi|2 : CTATAGCTAC--C-ATAGA-AG--GGGCATTTTCT-ATGGTTGGAA-ATGTTTGCGAT----TTGA-----G---CCATGAAT-----------GGTAGCCATT-TATGT---TCTGCGCTTCCAATTTC---TGTG----G----TT-A-GAT--TG-TACAGTA---------CCC-GT--ATGTATCTAT--G-TGCATGTAAATATA--T-----TTTGTGATTTATAA-TTTTTTCTCGAATTTTTC---------CAAT-C-TG-CAA-ATTTCCACAAATAATGCATGGACAACCACAG
gi|3 : CACTACA--TAC--CTGTA-A-AC--ACGTATTTTCT-GCGGA-GGAT-TTTTTTGCGAT----CCGA-----T---ATCTAAA---------------AGCGGTT-TATATATTTCTGCAGTTCCAATTTC---TGCG----G----TTTG-CAG--TA-TAC-CTA---------ACC-AT--A------CTT--G-TACTTG---AT-----T-----TTTGCGA-TTGTAA-TTTTT--GCGGATTTTT----------CTATCC-TG-AAA-A-GTTCGCAAATA----ATGGACAACCGTAGaaa
gi|4 : aatagcttggacaa--TAC--T-GTATA-GT--GGAAATATTTT-GCAGCTGGAA-ATTTTTGCGAT----TTGA-----T---CTTTAAAT-----------GGTAGCAAAT-TTTAC---CCTGCTTCTCCAATTTC---TGTG----G----TT-G-CATTATA-TAT-CTA---------TAC-AT--G------CAT--G-CATTTA---TC-----T-----TTTGCAA-ATGTGA-ATTTT--GTGGATTTTTCAATTTTTCTTTAT-C-CG-CAATA-GTCCCCCAA-A----ATGAACTACCat
gi|5 : TAAA--TAC--T-GTACA-AC--GGGTCATTTCT-GCGGTCGCAA-AATTTTGCAAT----CCGA-----T---TCCAAAAA-----------GGTAGTAATT-TACAA---TATGCGTTTCTAATTTC---CCAA----G----TT-G-TAT--CA-TGC-CTA---------TCT-AT--A------CCTA-G-TATATGTT-AT-----A-----ATTGCGA-TTGTAA-TTTTT--GTGGATCTTTC---------CTATCC-GC-AAA-A-TTCCGCAGGGA----ATGGGCAACCACaaaaacatc
gi|6 : a--TAC--T-GTACA-AT--GAGCATTTTCT-GCGGTTTGAA-TTATTTGCAAT----TTGA-----T---CCATAAAT-----------GGTAGCAATT-TATAT---TCT--GTTTCCAATTCCTTTTGCA----GTGAATT-G-AGT--TA-TAC-CTATATGC----ACCAATGAG------CAT--G-TACATG----------------TATATGA-TTG--A-TTTTT--GT-GATTTTT-----------TA--C-TG--------TCTGCAAA-A----ATGGACAA--GCAGtgaaa
gi|7 : tatacgtACA--TAC--C-GTATA-AT--GGATACTTTCT-GAGATTGGAATTTTTTTGCGAT----TTAA-----T---TCATAAAT-----------GGTAGCCA------AT---TCTGCATTTCCAATTTC---TACA----G----CT-G-CA---TG-TAC-CGA-----------T-GT--A------CAT--GTTACTAC---AT-----TTAAAGTTTGCGA-TTGAAA-TTTTT--GGAAAAATTTT---------CTAT-C-TG-CAA-AGTCCCACAAAAT----ATGAACAGCCACAagaaacta
gi|8 : atataaCACTACA--TAC--C-GTATA-AC--ACGTATTTTCT-GCGGGAGGAT-TTTTTTGCGAT----CCGA-----T---ATCTAAAA-----------GGCGGTTTAT-TATAT---TCTGCAGTTCCAATTTC---TGCG----G----TT-G-CAG--TA-TAC-CTA---------ACC-AT--A------CTT--G-TACTTG---AT-----T-----TTTGCGA-TTGTAA-TTTTT--GCGGATTTTTT---------CTATCC-TG-AAA-A-GTTCGCAAATA----ATGGACAACCGTAGatt
gi|9 : AC--T-GTAAA-AC--GAGTATTTTCT-GCGGGTGAAA-ATTTTTGCGAT----CCGA-----T---CAATAAAA-----------AGTA
blockSeqs : GC ATT T . TG T TT . ATAGA AATCCC TTATTATAAAAA A G ATT TTT AGACACG T T TA C A TAAGTACCTACTATCATGTACAGGTATCAATAT T T TC CAATTTTTCTTTATCCGCAATAG TAATGC
blockSeqs : . CT T . . . A . . CTG T A . . . CAGTGAA . . . . . CCCGTATGTATCTATGTGCATGTAAATATAT . . . CCCAACCCACTTAAT TA
blockSeqs : . A T . . . A . . CCA C A . . . AGG . . . . . TATGCACCAATGAGCATGTACATG . . . CCTATTCGCAAAAT TC
blockSeqs : . T A . . . A . . ACC A A . . . AAG . . . . . TGTACATGTTACTACATTTAAAG . . . CCTAACCGCGAAAT TA
blockSeqs : . C G . . . A . . TAC T A . . . CGA . . . . . TCTATACCTAGTATATGTTATA . . . CCAATCTGCAAATT GA
blockSeqs : . C T . . . A . . TCA A A . . . TGG . . . . . ATCAACCTTCGTATATATAG . . . CCTATCCGCAAAAT AT
blockSeqs : . T C . . . T . . CCA T T . . . CAA . . . . . ACCATACTTGTACTTGATT . . . TCTATCTGCAAAGT TA
blockSeqs : . T C . . . A . . ATC T T . . . TGG . . . . . TACATGCATGCATTTATCT . . . TCTATCCTGAAAAG A
blockSeqs : . T T . . . T . . CTT T A . . . TGG . . . . . ACCATACTTGTACTTGATT . . . CTATCCTGAAAAG A
blockSeqs : . C T . . . A . . TCC A T . . . CGG . . . . . CATCTCTTTACCTGTG . . . CTTCACGA A
blockSeqs : C A . . . A . . CCA T T . . . TGG . . . . . ATTATACACGCAAT . . . TACTG A
blockSeqs : T . . . . T . . TCA T A . . . AAG . . . . . . . . CCTT
blockSeqs : . . T . . ATC A . . . . CAG . . . .
blockSeqs : . A . . CAA A . . . . CGG . . . .
blockSeqs : . . . . C . . . . . . .
blockSeqCons : **** CGG******** CCTATCCGCAAAAT*************
originalCons : CACTACA--TAC--C-GTATA-AC--GGGTATTTTCT-GCGGTTGGAA-ATTTTTGCGAT----TCGA-----T---CCNTAAAT-----------GGTAGCAAAT-TATAT---TCTGCGTTTCCAATTTC---TGCG----G----TT-G-CAT--TA-TAC-CTA---------ACC-AT--A------CNT--G-TACNTG---AT-----T-----TTTGCGA-TTGTAA-TTTTT--GCGGATTTTTC---------CTATCC-CG-NAA-A-TTCCGCAAATA----ATGGACAACCGCAG
finalCons : CACTACA--TAC--C-GTATA-AC--GGGTATTTTCT-GCGGTTGGAA-ATTTTTGCGAT----TCGA-----T---CCNTAAAT-----------GGTAGCAAAT-TATAT---TCTGCGTTTCCAATTTC---TGCGG--------TT-G-CAT--TA-TAC-CTA---------ACC-AT--A------CNT--G-TACNTG---AT-----T-----TTTGCGA-TTGTAA-TTTTT--GCGGATTTTTCCTATCCGCAAAAT-------------TCCGCAAATA----ATGGACAACCGCAG
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|15 ): ATTTTTTTTCAACTTTTAATGTGCAAATGTGCAAAATGGTAATTTCACAGCATGCATATCCGAATGTAGGTATAAAAACCAAACATCACTTATACGTTGAAATTGTTTGACATTAAAGATAATAAA
Unaligned ( gi|20 ): CAAATGTACCATGCTATTATGGGACAGTGTAAAATAAAT
Alignments
lowQualScore : 111111111111 444444444444444444444444444444444444444444444444444444 111111111 111111
lowQualScore : 55 7777 2 3 33 0 2 2 2 5555 66666 666666 555555555555 2 444 444 77777777777 2 2 33 2 3 444444444444444444444444444444444444444444444444444444 3 3 44 0 222222222 3 3 66 111111
lowQualScore : .. .... . . .. . . . . .... ..... ...... ............ . ... ... ........... . . .. . . ...................................................... . . .. . ......... . . .. ......
lowQualScore : 00 8888 9 1 99 6 5 2 5 3333 22222 222222 000000000000 7 777 444 22222222222 5 5 44 5 1 888888888888888888888888888888888888888888888888888888 1 1 22 6 333333333 1 1 88 888888
consensus : CACTACA--TAC--C-GTATA-AC--GGGTATTTTCT-GCGGTTGGAAATTTTT-GCGAT----TCGA-----T---CCNTAAAT-----------GGTAGCAAAT-TATAT---TCTGCGTTTCCAATTTC---TGCG----G----TT-G-CAT--TA-TAC-CTA---------ACC-AT--A------CNT--GT-ACNTG---AT-----TT-----TTGCGA-TTGTAA-TTTTT--GCGGATTTTTC---------CT-ATCCGCAA-AATTCCGCAAATA----ATGGACAACCGCAG
Reference ( family-2793 ) : CACTACA--TAC--C-GTATA-AC--GGGTATTTTCT-GCGGTTGGAAATTTTT-GCGAT----TCGA-----T---CCNTAAAT-----------GGTAGCAAAT-TATAT---TCTGCGTTTCCAATTTC---TGCG----G----TT-G-CAT--TA-TAC-CTA---------ACC-AT--A------CNT--GT-ACNTG---AT-----TT-----TTGCGA-TTGTAA-TTTTT--GCGGATTTTTC---------CT-ATCCGCAA-AATTCCGCAAATA----ATGGACAACCGCAG
gi|1 : TCT-GCGTTTGGAATTTTTT-GCAATCTTATCAT-----T---CTGTGAAT-----------AGTAGCAAAT-TATAT---TTTGCATTTCAAATTTC---TGC----------TT-G-CAT--TA-TAT-ATGT--------ACC--T--A------TAT--AT-ATATA---A-------T-----TTGTGA-TTGTAA-GATTT--GCTGAATTTTC---------TT-ATCTGGGA-A--TCCACAAAAA----GTAGACAATCACAG
gi|10 : aatcaagtatggacaatcaggacataaaacaaatgctgtataaaATTTTCT-TTGGTTGG-----TTT--CGAT----TTAA-----T---CTGTAAATTATTATAAAAAAGTAACAAAT-CATGT---TCTTTGTTTCCAATTTT---TGAG----G----TT-G-CAT--CA-TAC-TTATAAGTACCTACT-AT---------CAT--GT-ACAGGT--ATCAATATT-----TTGCGA-TTGTAA-TTTTT--GTGGATTTTTC-------------TTCACGA--------CAAA-A----CTAGACAACTGCAGaaaatact
gi|11 : gaACA--TAC--T-GTATATAC--G---------T-GCGATTGGAAATTTT--GCGAA----TTGAATAGAT---CCATTAGT-----------GGTAGCAAAT-TACAT---TCTGCGTTTCCAATACC---TGAA----G----TT-G-CTT--TA-CAC-C-----------ATT-AT--A------C-------ACGCA---A------TT-----TTGCTA-TTGTAATTTTTT--GCAG--TTTTC---------CT-ATTCGCAA-AATTCTGCAAA-A----ATTGACAATCGCAGaaaatacct
gi|12 : CTACA--CGCATT-ATATA-AC--AAGTATTTTCTTGCAGT-GGAAATTTTT-GTGAT----TTGA-----TAATCCCTTAAC-----------GGTAGGAAAT-TATAT---TCTGCGCTTCTGATTTC---TTCG----A----TT-G-CAT--GA-TAaaaat
gi|13 : tgtacatgttattataattatagtgt--TAC--A-GTATA-ACTGAGATATTTACT-GCGGGTGGAAATCTTT-GAAAT----CCAA-----T---ACCTAAAA-----------GGCTGCAAAT-CAT-----------------ATCTC---TGTG----G----TT-G-CAT--TA-TA---TA-----------C-AT--C------TCT--TT-ACCTG----T-----GT-----AT-CG--TTGTAT-TTTTT--GCGGATTTTTC---------CT------------TTCCGCAGATA----ATGAACACCCGCaggatgcatttatgtagagaatgtttacacaaatgat
gi|14 : AC--T-GTTTA-AC--TGGTATTTTCT-GTGATTGAAAATTTTT-GCGAT----TTGA-----T---C----AAT-------------TAG--AATGTCTAC---TCTGCATTTCCAAATTC---TGCA----A----TT-G-CAT--TA-ttaaaa
gi|16 : attcagaagtgtaaATA--TGT--C-ATAAA-AT--GGAGATTTTCT-TGGATTGAACATTTTT-GTGAT----TTGA-----T---TACAAAAA-----------GATAGCAAAT-TATAT---ATTCCGCTTCCAATTTT---TGTG----G----TT-G-CAT--TA-TAcccgtgtaccacaaatatcatttaatggatatacaagatgtttaggaaaaa
gi|17 : tctgaaatattatcTTCCAATTTT---CGAGACACG----TT-GTCAT--TACTTT-TTG---------ATC-A---A------CCTTCGT-ATAT----ATA----GT-----CTGCGA-TCGTAA-TTTTT--GTGGA-TTTTC---------CT-AACCGCGA-AATTCGGCAA
gi|18 : --GGGTAGTTTCT-GTGGTTGGAATTTTTT-GTGAT----TT-A-----T---TCATAAAT-----------GGTAGCA----------------CATTTCCAATTTC---T-------------------T--TA-TAT-TTA---------AAT-GT--A------CCT--GT-ccaaaaaaat
gi|19 : TGTGA-TAGTAA-TTTTT--GCGGATTTCTC---------CCAACCCACTT-AATTTTGCAAATC----ATGGACAACCATAGtgtgtatacatataca
gi|2 : CTATAGCTAC--C-ATAGA-AG--GGGCATTTTCT-ATGGTTGGAAATGTTT-GCGAT----TTGA-----G---CCATGAAT-----------GGTAGCCATT-TATGT---TCTGCGCTTCCAATTTC---TGTG----G----TT-A-GAT--TG-TACAGTA---------CCC-GT--ATGTATCTAT--GT-GCATGTAAATATA--TT-----TTGTGATTTATAA-TTTTTTCTCGAATTTTTC---------CA-ATCTGCAA-ATTTCCACAAATAATGCATGGACAACCACAG
gi|3 : CACTACA--TAC--CTGTA-A-AC--ACGTATTTTCT-GCGGA-GGATTTTTTT-GCGAT----CCGA-----T---ATCTAAA---------------AGCGGTT-TATATATTTCTGCAGTTCCAATTTC---TGCG----G----TTTG-CAG--TA-TAC-CTA---------ACC-AT--A------CTT--GT-ACTTG---AT-----TT-----TTGCGA-TTGTAA-TTTTT--GCGGATTTTT----------CT-ATCCTGAA-AAGTTCGCAAATA----ATGGACAACCGTAGaaa
gi|4 : aatagcttggacaa--TAC--T-GTATA-GT--GGAAATATTTT-GCAGCTGGAAATTTTT-GCGAT----TTGA-----T---CTTTAAAT-----------GGTAGCAAAT-TTTAC---CCTGCTTCTCCAATTTC---TGTG----G----TT-G-CATTATA-TAT-CTA---------TAC-AT--G------CAT--GC-ATTTA---TC-----TT-----TTGCAA-ATGTGA-ATTTT--GTGGATTTTTCAATTTTTCTTT-ATCCGCAATAGTCCCCCAA--A----ATGAACTACCat
gi|5 : TAAA--TAC--T-GTACA-AC--GGGTCATTTCT-GCGGTCGCAAAATTTT-GCAAT----CCGA-----T---TCCAAAAA-----------GGTAGTAATT-TACAA---TATGCGTTTCTAATTTC---CCAA----G----TT-G-TAT--CA-TGC-CTA---------TCT-AT--A------CCTA-GT-ATATGTT-AT-----AA-----TTGCGA-TTGTAA-TTTTT--GTGGATCTTTC---------CT-ATCCGCAA-AATTCCGCAGGGA----ATGGGCAACCACaaaaacatc
gi|6 : a--TAC--T-GTACA-AT--GAGCATTTTCT-GCGGTTTGAATTATTT-GCAAT----TTGA-----T---CCATAAAT-----------GGTAGCAATT-TATAT---TCT--GTTTCCAATTCCTTTTGCA----GTGAATT-G-AGT--TA-TAC-CTATATGC----ACCAATGAG------CAT--GT-ACATG-----------T-----ATATGA-TTG--A-TTTTT--GTGATTTTTTA---------CT-GTCTGCAA-A-----------A----ATGGACAA--GCAGtgaaa
gi|7 : tatacgtACA--TAC--C-GTATA-AT--GGATACTTTCT-GAGATTGGAATTTTTTTGCGAT----TTAA-----T---TCATAAAT-----------GGTAGCCAAT-T--------CTGCATTTCCAATTTC---TACA----G----CT-G-CAT---G-TAC-CGA-----------T-GT--A------CAT--GTTACTAC---AT-----TTAAAGTTTGCGA-TTGAAA-TTTTT--GGAAAAATTTT---------CT-ATCTGCAA-AGTCCCACAAAAT----ATGAACAGCCACAagaaacta
gi|8 : atataaCACTACA--TAC--C-GTATA-AC--ACGTATTTTCT-GCGGGAGGATTTTTTT-GCGAT----CCGA-----T---ATCTAAAA-----------GGCGGTTTAT-TATAT---TCTGCAGTTCCAATTTC---TGCG----G----TT-G-CAG--TA-TAC-CTA---------ACC-AT--A------CTT--GT-ACTTG---AT-----TT-----TTGCGA-TTGTAA-TTTTT--GCGGATTTTTT---------CT-ATCCTGAA-AAGTTCGCAAATA----ATGGACAACCGTAGatt
gi|9 : AC--T-GTAAA-AC--GAGTATTTTCT-GCGGGTGAAAATTTTT-GCGAT----CCGA-----T---CAATAAAA-----------AGTA
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|15 ): ATTTTTTTTCAACTTTTAATGTGCAAATGTGCAAAATGGTAATTTCACAGCATGCATATCCGAATGTAGGTATAAAAACCAAACATCACTTATACGTTGAAATTGTTTGACATTAAAGATAATAAA
Unaligned ( gi|20 ): CAAATGTACCATGCTATTATGGGACAGTGTAAAATAAAT