lowQualScore : 111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111 11111111111111111111111111
lowQualScore : 2 22 11 555555555555555555555 222 444444 9999999999999999999999999999999999999999999999999999999999 11 2222222 1 44444 2 555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555 44444444 1 1 22 1 2 555555555555 2 4 2 11 2222222 33333333333333333333333333 6666666666 11 1 11 3333333333 11 444444444 11 2 1 3333
lowQualScore : 0 11 88 0 444444444444444444444 222 000000 8 0 4444444444444444444444444444444444444444444444444444444444 99 8 8888888 0 88888 3 0 000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 6 22222222 7 2 5 77 5 0 000000000000 2 4 0 0 7 44 2222222 8 6 8 8 00000000000000000000000000 3 2222222222 99 2 44 0 2 22 6 4 4444444444 33 3 000000000 11 7 0 8888
lowQualScore : . .. .. . ..................... ... ...... . . .......................................................... .. . ....... . ..... . . ............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ . ........ . . . .. . . ............ . . . . . .. ....... . . . . .......................... . .......... .. . .. . . .. . . .......... .. . ......... .. . . ....
lowQualScore : 0 00 00 8 444444444444444444444 222 444444 0 8 9999999999999999999999999999999999999999999999999999999999 00 0 8888888 0 22222 2 3 999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999 0 55555555 0 5 5 55 0 0 000000000000 5 0 0 0 8 00 0000000 0 0 0 0 00000000000000000000000000 0 3333333333 22 5 22 0 2 55 5 0 2222222222 88 2 888888888 22 8 0 8888
consensus : CTGGTATGCTATTTAANATTATNTCT-GCT-AT---AAAATTGGTT--GATAT-----TA-TTTGTGACAAATC--CGA-TG-----ATTT-GTAA--ATTCGGGCATGTCTCGAATTA-ACGTAG-ACCATTA-T-TTGG-C-T---GCTTTGAA-GAGGGTGCAC--CAATGTATA-TGGGGGGGGGG-AC-GGGGG-AGGTAAAGTAATCGGTAGCAATATT-TCAA--AGT--CTACGT-TCAANGGG---GTG-CA-CC-T-------------CTT--C-CTGTGTTGATTTTCG--CCAATATCAG--GCTCCACT-TATAT-AC------ATCAGTTGTTACAG--GAGCAAC-GAAGTCAA--AATG-TA-A----TAATTTAAATTGCATT--A-GAATAC-----CCGCAA--ACC--AATN---TCGA------TCATNANTT-TTTCATCNCCA-CCGCTT---CA-T-CCATATTTAT-NCGGGGAACATA-AA-TAG--AGGTC----------AGC-TGCG-TT-CGAGGAGG-GAATTA--------ATT--T--------------TTTC-CTGTTATAAAAGCTTG-AT-ATT--T-GTTTGTTATACTT-ATACAATATCAAGTGGCGGA-TCCAGA--GAGG-AGGGGGGG---G---GGGGTGCGTCTAAGGG----GGTCGCGACCC----CACCTTT-CA-TTAAA-----NAA-TTT-GCTAAATA-A--T--TC-AAAA----TGTAGAC-------A--CC-C-------TTTC-AAACA-TT-C--CGGA-----T-CC-G---C-C-CT-GC---AATTT------GTT-G-----T-CGTCTGTGTGGCTTCGCGCATGCTTATAG-A-AAATTGTAAAA--ATGCGGAACCATAACTTCTG-CAGAGTTC-GGAT-CAAGGGGTATATTTTNNATNNATTCNTAATT-GGCCA-AGCT---AATNA--AAATAAAT-GCCTAT--TGAATTT-TCAA--CTATAGTAGCACTTGCATTGCATGCCCAAC-CATCTATAANTATATTATGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATAGATTCTGTCTGGTCTGNTGGTGTAAANAAACATAAGGAGATTACAAAATCAATCAAATGCCTTCTTTNACAANACAGATANNNNNNNNNNNNNNNNNNAGTA-CTG-ATTGTAC-TA----A--TAGCTGG-GTATT-GTA-TTGAAGGA-AAAC-AAA-ACTTTTTAC---CATTTCAAGCCAAAGA---AGGGTTTGTTC-AAATCTTCTTTTTT-TTTAGATG-ATCCGAAAATTAGAGNAAAT---TGGCT-TT--GAAAATATTTATTTG-CG-TTTT-ATCCGAAGA-TTTTT-TCGT---TTATTT
Reference ( gi|1 ) : CTA-TATCTTATTTAAAATTATTTCTTGCT-AT---ATAATTGGTT--GATAT-----TA-TTTGTGACAAATC--C---TA-----ATTT-GTAATTATTCAGGCATGTCTCGAATT--ACGTAA-ATAATT--T-TTGG-C-T---GCTTTGAA-GAGGGTGCACCGCAATGTATACTGGGGTGGGGGAGCCGGGGG-AAGTCAAGTATCCGGTAACAACATT-CCGA--AGT--CTACGTGTCAATAGGT-TGTG-CA-CC-T-------------CTT--C-CTGTGTTCATTTTCGGTCCAATATCAGTTGCTCCACT-TATAC-ATGGA-ACATTAGTTGTTACAGTTGAGCAAC-GAAGTCAATTAATGCTA-A----TAATGTATTTT---TTTTAAGAATATTC---CCGCAG--ACT--AATT---TCGA------TCATCATTTATTTCATCTCCAGCTGCTTTGACAGTGCCATATTCAT-CCGGGGAACATATAA-TAACTAGGTCACGTCATTCAAGCCTGTG-CT-CGAAGAGA-GAATTA--------ATT--T--------------TCTC-CTGTTATA-----TTGGATTATT--T-GTTTATTATACTC-ATAAAGTATCACGTGGGGGAATCCAGAAAGAGGTAGGGGGGGC--G---GGGGTGTGTCTAAGGG----GGTCGTGACTC----CACCTTTTCAGTTAAA-----TAA-TTT-GCTAAATAAA--T--TC-AAA-----TGTAGAC-------A--CT-C-------TTTC-AAACA-TT-C--TGGA-----T-CT-G---C-C-CT-GC---AATTT------GTT-G-----T-CGTCTGTGTGACTTCGCGCATGCTTATAG-G-ATATTGTTAAA--ATGCGGAACTATTACTTCTG-CATAGTTC-GGATCCAAGGGGTATGTTTTTGATTAATTTTTAATT-AACTA-AGCTTGGAATTATGAAATAAATTGTCTATGCTGAATTTATCAGAGTTACATTAGC-CTTGCATTGCA--CCCAACGGATCTATAATT-TAT---------AGTCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGATTTTGTCTGGTTTGGTGTTGTTAACAAACATAAGGAA--TACCAA-TCAATCAAATGTCTTCCTTGACAATA-AGATACCATTTAATTCATTAGGTAGTATCTGTATTGTAT-TA----A--TAGCTGG-GTGTT-GTA-TTGAAGTA-AAAC-AAATACTTTTTACGGATGTTTCAAACCAAAGATGGAGGGTTTGTTC-AAATCTTTCTTTTT-TTTAAATG-ATCCGAAAATTAGAGAAAAT---TGGC--TT--GAAAATATTTATTTG-TG-TTTT-ATCCGAAGATTTTTT-TCGT--TTTATTT
gi|16 : CTAGTATACTATTTAAGATT-TATCT-GCT-AT---AAAAT--GTT---ATAT------A-TTTGTGACAAATT--C---CATGTATATTT-GTAAC--TTCGGGCATG--TCGAATTAAACGTAG-A
gi|8 : atgtgggacgttaataaaatatgtctgcggcatgtgcagtctgcgttcgggggggtcgatggtaatcgccatgtaTG-TATGCTATTCAAT-TTAT--CTTGTT-TTTCCAAAAT--GTTTGGATAT------A-TCTG--ACAAA-CGAT---TG-----ATTT-GTAAT----CTGGCA-ATACCGA------CGTAG-C--ATTA-T-TTGG-C-CTTGGCTTTGAA-AAGGACGCA---CGATGTATA-TGGGGGAAAGGTACC---GT-AAGC--AGTA---AGTAACAATGTT-C--A--A------ACG-------GGG---GTG-CA-CCTT-------------CTTTCT-CTATGTTGAATTTCG---CAATATCAG--GCTCCAccatgtatttgtt
gi|3 : taagcattgtacctgcgttgggggggggggggggggggtattttcaTAATTGAA--TATATCT-GCT-AT---G-AATTGGTT--AATAT------A-TTTGTGACAAATC--GAA-TG-----ATTT-GTAA--AT-CAATTATATC--GATTT--A-ACAC-ACCATTAGT-CGGA-C-T---GATTTGAA-GAGGGTGCACA--AATGTATATTAGGG-----AAAC---------GT-AAGTAATCGGTAGC-----T-TCG----TT--CAACGTG---A-AGGA-CGT--------T-------------CTT--T-CTATGTTGATTT-CG--CCGATATCAG--GCTACACT-GATGT-AT--------CAGT-GTTAGAG---AATAAC-GAAGTCA--CAATG-TATA----TAATTTAAATTACATTGGATGAAT-------CCGCAA--AC---AATTGAATCA--------CACCATTT--TTCATTCCCA-CCGCTT---CAGT-CCATATTTTT-GTGGAGAACA-A-AA-TAAAGAGATC-------T--AGC-TGCA-TT-TGAGGAGG-GATTTATTTATGCTATTATT--------------TTTC-CTGTCATAAAAGCTTG-ATAATTGAT-ATTTGCTGCATTTTGTACAAT-TCA-GTGGCGGA-TCCAGA---------GGGGAG---G---NNNNNNNNNNNNNNNN----NNNNNNNNNNN----NNNNNNNNNNNNNNNN-----NNN-NNN-NNNNNNNNNN--N--NN-NNN-----NNNNNNN-------N--NN-N-------NNNC-ATACA-TC-C--CTGA-----TTCC-G---C-CTCT-GC---A-------------------------CTTTGTGGCTTCGTGCATGCTTA----G-AAATTATAAAA--AAGCGGAAC-ATAACTTC-G-C--AATTC-GGAT-CAA--GGT---TTTTTTATCCATTCATAA---GGCCA-AGCT---AATCA--AAATAAA--GTTTATTCTGCATaacaaagtaaaatggggaacataacattgcagcctgcgttcaaaggaaattagctacaatgtatactgtaatttttt
gi|14 : atgtgggggactaatagatatgtcgacgcattacagcatgcgttcagggtgtgttggtttgaggtggataatctccaatccccttgtctactaTTAATGTTATCT---GCTTAT---AAAAATGGTT--GATAT-----TATTTTGTGACAAATC--CAG-TA-----ATTTGGTA---CTTCGGGCATGT-TCGAATTA-ACGTAA---CATT--T-TTGGAC-T---GCTTTccctgtgtaacactttatacaca
gi|4 : tgtggggcgtaattaatatgtccgcggcattgcagtgcgttttcgggggtgggtccagtggtatcgccatgtgaactagtataagctaAAATTATCT---GGT-AT---AAAA--AGTTA-GATATACATGTA-TTTGTGGAAAA-C--CGAGTG-----ATTT-GCAA--AT-CGGGCATGTC--GAA-----CGTAACATTATT--TGTCGG-------GTTTTAAA-GAGGGTGCA-CGCCATATGT
gi|2 : atgttgcagctgcgttcgagggatttatctccatgcatgtatactgtt--T-TTGG-CCT---GCTTTGAAAGAGGGTGCAC---AATGTA-AATGGGGAGGGGG----GGGGGTAGGTTAA----TCGGTAACAACATT-TCAA--AGT--CTACGT-TCATTGGG---GTG-CA-CC-TTCTTTCTGTGTTTCTT--T-CTGTGTTCATTT-CG--CCAAT-TCAG---CTCCACTGTATA-----------TCAGTGGTTACAG---AGCAA--GAAGTCAAAGAATG-TA-A-----AATTTAAATTGCATTTCAATAA-AT-----CCGC------C--AACA---TCGAA-----TCATAAATT-TTTCATCTCCA--TGCTTTGACA-T-CCATATTTAT-T-GGGGAACATATAAATAGC----------------AGCCTTTG-CTTCGAAGAGAAGAATTA--------ATT--T---------------CTC-CTGTTATAAG---TTTGAT-ATT--T-GTTTAT-ATACTT-ACAA--TA-CAAGTGGGGGA-TCCAGA----GG-AGGGGGGG---G---GGGG---GTCTA--GG----GGTC-CGACCCACCCCACCTTT-CA-TTAAAAAAAATAAATTT-GCTAAATACA--TAGTC-AAAA----TGTAGAC-------A--CC-C-------TTTC---ACATTT-C--CGGA-----T-TTCGT--C-C-CT-GC----ATTT------GTT-G-----T-CGTCTGTGTGACTTCGCGCTAGCTTATAG-A-AAAAT-TAAAA--ATGCGAACCTANNNNNNNNN-NNNNNNNN-NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN-NNNNN-NNNNNNNNNNT-TG--CTAAATTG--------AAATTT-TCAA--------TAG----TACATTGCATGCCCAAC-CATCTATAAAT-TAtttaaaaggtttcagttcaaacatgttatatggggaaaataaaataataagcagctacatttcaagtagtaactacattatacggagtgcaccttctctctatatcaatttttccaatatcaggctccacttacataatgtatatattcgtgttacagagaaattaagtcaaactgtaaaatttaaaatatcattgcatacgcaatccgtaaacacttgaatcatgacaatattcattacttttttcatcaccaccgcttcagccttataaataccgataaggtctgtgtttcggggagggaatttatctatgcttatatggcatttctctgttataaaagtttgttgtttcgtttatacctatacaattcgtgacggagggggagagggggggtattcaaggtattcaaggtgtcgggcacctaaaaaattccttttgtagactcccttaattccccttttcaaaaattcttgaatccgcacccttgtgaaaatccaagcaggatgtcgtttgtttggctttgcgcatactgtagaaataatattgaag
gi|4 : GGGGA-AAATAAAATAATAAGCAGCTACATT-TCAAGTAGTAACTACAT-T--ATACGG-AGTG-CA-CC-T-------------TCT--CTCTATATCAATTTT---TCCAATATCAG--GCTCCACT-TACATAATGTATATATTCG-TGTTACA---GAGAAAT-TAAGTCAA--ACTG-TA-AAATTTAAAATATCAT---T-----GCATACGCAATCCGTAAACACTTGAATC---ATGACAATATTCATTACTTTTTTCATCACCA-CCGCTT---CA--GCCTTATAAATACCG------ATA---------AGGTC--------------TGTGTTT-CGGGGAGG-GAATTT--------ATC--TATGCTTATATGGCATTTCTCTGTTATAAAAGTTTG--TTGTT--TCGT---TTATACCT-ATACAAT-T--CGTGACGG-----AGGGGGAG--AGGGGGGGT--ATTCAAGGTAT-TC--AAGG----TGTCGGG--------CACC--------TAAA-----AAA-TTC--CT---------T--T----------TGTAGACTCCCTTAA--TT-CCCCT---TTTC-AAAAA-TT-CT-TGAA-----T-CC-GCACC-C-TT-GTGAAAATCCAAGCAGGAT-G-----T-CGTTTGTTTGGCTTTGCGCATAC-TGTAGAA-ATAATATTGAA--gtacnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnttaaag
gi|22 : atgttgcagctgcgttcgagggatttatctccatgcatgtatactgttaaattatctggtataaaaagttagatatacatgtatttgtggaaaaccgagtgatttgcaaatcgggcatgtcgaacgtaacattatttgtcgggttttaaagagggtgcacgccatatgttttaaaaggtttcagttcaaacatgttatatGGGGG-GGGTATAGTAATAAGTAACAATATTATCAT--AGTG-CAACGTTTGCACAG----GTG-CATCC-T-------------CTT--CTCTGTGTTg
gi|19 : ggGTAGCATTATT-TC-A--AGT--CTATGT-TCAAGGGG---GTG-AA-CCTT-------------CTT--T-CTATCTTGA-TTTCG--CCAA---------------T-TATAT-CC-----CA----TTGTTACA---GAGCAACGGAAGTCAA
gi|13 : acaaaggtttcagttcaaaaatgtataatgcggaaagtaattcatgaA--AGT--CTATGT-TCAAAGGGTACGTGGCA-CA-T---------------T--C-TTG-----ATTT-CGG--CAGTGTCAG--GCTCCACT-GATAT-ACAG----------TGTTACAG---AGCAAC-AAAGTCAAaaat
gi|15 : tcggcctggtttggaagaggatgcaaaggcttcagttcaaaaattaatgtgtatatgcggaaaataatgagttattttcATTAAGTGGTGGAAT-------GAGG-AGGGGAGG------------GCGTTTA--GG----GGT--TGACCC----C--CTT---AGTTAAA-----ATA-TTT-GGTAAACGAAATT--TCTGAA-----TGT-GAC-------ATGCC-C-------TTCCTACACA-TTCC--CGGATCGCGT-CT-G---C-C-TC-G------TTT------GTT-GGGCTTT-CGTGTATGTGaaggtttaacttgaatttgacaacacaatctgcaaacaccagcccataaattcacatttctcatcaccatcgct
gi|5 : cctttatagctgatatttgatattgcctaatttgatacaaGGGCCAG---GGGGTGAA---AAGGATCTAGGTCG-GACCC----C---CTTTCGCTAAAA-----TAA-TTTTGTTAAATAAA--T--GT-AAAAAAAGT-TAGAC-------A--CC-CCCCCCCGTTTC-AAA-A-TT-CC-TGGA-----T-CC-G---C-C-CT-GC---AATTG------CGC-G-----T-CG--TGTG-GGCTTCGCGCATGCTTAAAA-A-ATA----TAAA--ATGCGGAACct
gi|6 : gtaataaatattatctttacagtctgcgttctaggatgaaatttatatatctttgttataaaagtttgaacttcgatattttttttacaatttagttgcAAA-----CAT-TAT-GTTAAAT-----T--TA-AAA-----TGTAGAC-------A--CT-C-------TT-C-AAACAGTC-C--TGGA-----T-CT-GT--C-C-CT-GC---AATTT------GTTTG-----TGCGTCTGTGTGACTCGACGCATGCTTATAG-ACAAATTGAAAAAAGATGCGGAACCATAACTTTTGTCAGAG--CAGGAT-CAAGG---ATATTTTGGATGAA---TTAATTAAACTAGAGCT---AATAA--AAATAAATATCCTATA-TGAAATT-------CTATAGTAGCACTTGCAT--CA---CCAAC--ATCTA-AATTATATTATGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATAGATTCTGTCTGG--TGG---TGTAAAAAAACATAAGGAA--TACAAA-TCAAT--AATG----CTTTTACAATA-ctannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntttgcttttgatatttcatagtacatgcatggcaccaccaatccatattacttaatattgggtgccataagcaggctgcaaatcggatagaaaatttcattcgttttaa
gi|7 : ctttgctgA-TTT-G-TAAAT-----T--TC-AAAA----TGTAGAC-------A--CTTC-------TTTCCAAACA-TT-CCCTGGA-----T-CT-G---TTC-CTAGC---ATTTTT-----GTT-G-----T-CGTCTGT-TGA--TCGCGCTCG--TATAG-A-A-ATTGAAAAA--ATGCGGAACcaaga
gi|18 : tttgctgactacTTTGTGTGGTTTCGCGCATGCTTAcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnttgatatatgaatctttcatagtaattgtgcatgcaccagccatctatattattattatgtaacattctgactattatctatggaaatgccgaatagaaattttcagctcgttaatttaatagtatgattgatctgttggtgtaaacaaactaaggagattacaaaatcaatcaatgccttcttgacaaaacagatagaa
gi|7 : TGATCTGTTGGTGTAAACAAAC-TAAGGAGATTACAAAATCAATCAA-TGCCTTC-TTGACAAAACAGATAgaaataataatgaacagaaccnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnatgtgctctatggaatttcacagtatattgcatgcaccaaatatctatta
gi|11 : tttgctgactacatttgtaaatttcaaaatgtagacacttctttccaaacattccctggatctgttcctagcatttttgttgtcgtctgttgatcgcgctcgtatagaaattgaaaaaatgcggaaccnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnttgatatatgaatctttcatagtaattgtgcatgcaccagccatctatattattattatgtaacattctgactattatctatggaaatgccgaatagaaattttcagctcgttaatttaatagtatgatAGTA-CTG-ATTGTACCTA----A--TAGCTGG-GTATT-GTA-TTGAAG-A-AAAC-AA--ACTTT-------CATTTCAAGCCAA------AAGGTTTGTTCAAAATCTTCTTTTTTGTTTAGATGAATCCGAAAATTAGAGAACAA---TGGCTTTT--GAAAATATTTATTTG-CG-TTTTGATCCGATGA--TTTT-TCGTTATTTATgaa
gi|12 : AGTA-CTG-ATTGTAC-TA----A--TTGCTGG-TTATT-GTA-TTAGAGGATATACAAAAAACTTT------ACATTTCAGGCCAAAGTTACA-----TCTTC--AATCTTCTTTTGT-TTTAGAT--ATC--GAAATTAGAGTAAAT---GGGCT-TT--GAATATCGTTA-------------GTCCGAAGATTTTTCATCGT--ATTAaacatttaacatctgtttctatgtctctcccccccccttttattttattctgacacgatgagttgatatccttttggaagttttt
gi|10 : aaCTG-ATTGTAC-TACTGAG--TAGCTGAAGTATTTGTA-TTGAATGA-TAAC-AAA-ACTTTC-------ATTTCAAACCAAAGA--GAGG-TTTGTTC-AAAA---TCTTTTT-TTTAAATG-ATCTGAAAATTCGAGAAAATGCATGTCT-TT--GAAAATATTTATTTGCCGTTTTT-ATCC-AAGA-TTTTT-TCG----TTATTTaatacattaacattctgtttctagtctctctcccccccccctacttatcttattctgacacagatgaaggattattcctcttttggaattctccc
gi|9 : aTATTGTAC-TA----AAGTAGCTGG-GTAAT-GTAATTGAAG---AATC-AAAC----TTTACA----TTTCAAGCCGAAAA-----GGTTTGTTT-CAATCTTCTTTTTG-TTTAGATG-ATCCGAAATTAAGAGTAAA----TGGC--TTTGAAAAATATTTATTTG-CG--TTG-ATC--GAGA-TTTTT-TCG----TTATTTaatacatttaacatctgtttcctagtcttttttacctcttaatcttatctgacacagatgaagttgatatccttttggaagttct
gi|23 : aaagtacTGTAC-TG----A--TAGCTGG-GTACT-GTA-TTGAAG-A-AAAT-AAA-A--TGTTAC----ATTTCAAGCCAAAaatacatttacatcttgttctagtctctctctcccccccccccctttatactattctgacacagatgaatgttgatatcttttggaagttct
6 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|17 ): TTCTTTCTTATGGCTATTCGGTCCAATATCATACGTTCACTGATATACAGTGTTATACAGAGAAGGAAGTAAAAAATGTAAAACATTACACGAAATCCACAAAACACATCTCATAGTTATGAATCATTACCATTTTTTATCACCACGTTTCAGTCCCATATGTATGTGGGGGCCATCGTAAAAAAA
Unaligned ( gi|20 ): GTGGGGAACGTAATAATAAGTCGCAGCATGTCAGTCTGCGTTTTCGGGGGTGCGGTGCTTGTGAGTGGTAATCTCCATGTATCACTATTAAATTACCTGC
Unaligned ( gi|21 ): ATGTGGGGGACGTAAATAAAATAAGTCGCGGCATTGCAGTCTCCCTGCGTTCGGGGGTGGGTGAGTGGGTAATCTCCATGTATACTATTAAATTTATCCT
Unaligned ( gi|24 ): TCAAAGTATTTAATGTACTGATAGCCGGGTACTGAACTGAAGAAAACAAAACTTTACATTTCAAGCCATAA
Unaligned ( gi|25 ): TAATCAAGTACTGAATGTACTGATAGCCGGGTACTGTATCGTAGCAAATCAAGCC
Unaligned ( gi|26 ): AATCAAAGTACTTAATGAACTGATAGCCGGGCACTGTAC
Alignments
lowQualScore : 222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
lowQualScore : 111 1111 11 1 111 111 111 333333 111111111 1111 222222 1111 222 2222222 22222222 1 1111 1111 111 111111 111111111 111 3333333333333333 1 11111 222222222 33333333 11 2222 111 9999999999999999999999999999999999999999999999999999999999999999999999999999999 111 444444444 11 2222 8888888888888888888888888888 5555555555555555555555555555 111 1111 22222222222222222 2222 444444444444444 4444444444444444444444444444444444444 1111 111111 444444444 44444444444 11 1 22222 222222222222222222222222 1111111111 11111111 1111111111 111 777777777777777777777777777777777777777777777777 2222 11 22 555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555 1 11111 333 2 22 1 1 111111111111111111 11 3333333 3333333 111 11 2222 11 11 333
lowQualScore : 9 111 0000 00 4 6 6 111 555 666 222222 6 7 666666666 9999 1 666666 2222 3 222 6 7 5555555 8 99999999 0 0 6 9999 0 2222 000 666666 333 4 555555555 4 555 333 4 5 5 4444444444444444 3 5 77777 2 888 5 111111111 99999999 33 7777 3 88 5 77 77 6 777 3 9999999999999999999999999999999999999999999999999999999999999999999999999999999 6 1 111 222222222 0 77 1 1111 4444444444444444444444444444 77 3 6 4444444444444444444444444444 3 6 777 2 4444 1 44444444444444444 6 3333 1 555555555555555 99 6666666666666666666666666666666666666 1 7777 5 1 999999 4 000000000 2 1 5 66 66 00000000000 2 5 0 5 5 5 66 0 00000 5 5 999999999999999999999999 5 0 3 5 66 555 77 0 4 66 0 4 0000000000 6 33333333 22 22 33 3333333333 111 1 99 666666666666666666666666666666666666666666666666 0 1111 66 44 1 00 333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333 2 44444 1 7 111 3 22 2 2 1 1 6 888888888888888888 4 55 2 4 9999 66 4 0 4 4 44 5 0 5 55 9999999 3333333 444 33 8 3 8 8 3 1 0000 88 88 0 8 88 8 8 5 88 11 666
lowQualScore : . ... .... .. . . . ... ... ... ...... . . ......... .... . ...... .... . ... . . ....... . ........ . . . .... . .... ... ...... ... . ......... . ... ... . . . ................ . . ..... . ... . ......... ........ .. .... . .. . .. .. . ... . ............................................................................... . . ... ......... . .. . .... ............................ .. . . ............................ . . ... . .... . ................. . .... . ............... .. ..................................... . .... . . ...... . ......... . . . .. .. ........... . . . . . . .. . ..... . . ........................ . . . . .. ... .. . . .. . . .......... . ........ .. .. .. .......... ... . .. ................................................ . .... .. .. . .. .......................................................................................... . ..... . . ... . .. . . . . . .................. . .. . . .... .. . . . . .. . . . .. ....... ....... ... .. . . . . . . .... .. .. . . .. . . . .. .. ...
lowQualScore : 0 333 0000 88 0 7 7 777 888 888 222222 7 3 777777777 5555 0 000000 2222 2 888 7 3 8888888 0 00000000 0 2 5 8888 7 7777 777 888888 222 4 999999999 4 666 999 4 0 0 1111111111111111 3 4 55555 0 222 0 333333333 99999999 44 3333 0 77 7 99 99 7 555 2 3333333333333333333333333333333333333333333333333333333333333333333333333333333 7 0 333 888888888 8 44 7 0000 6666666666666666666666666666 77 7 7 4444444444444444444444444444 8 7 555 2 0000 8 88888888888888888 7 2222 0 555555555555555 55 5555555555555555555555555555555555555 6 3333 7 0 444444 8 222222222 8 4 0 99 99 00000000000 1 0 2 0 0 0 99 0 88888 0 0 111111111111111111111111 0 1 2 0 99 444 99 7 3 55 8 2 7777777777 7 77777777 00 00 33 0000000000 777 0 22 777777777777777777777777777777777777777777777777 8 6666 22 00 0 77 000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 0 00000 0 3 333 7 00 0 3 0 0 7 000000000000000000 4 66 6 4 4444 11 4 6 4 4 44 0 1 7 99 7777777 0000000 000 66 0 2 0 0 2 0 0000 88 88 8 0 66 0 0 0 88 00 444
consensus : CTAGTAT--ACTAT--TTAANATTAT-TCT-GCT-AT---AAAATTGGTT--GATAT-----TATTT-GTGACAAATCCGA-T-G---ATTTGTAA--ATTCGGGCA--TGT-TCGAATT-AACGTAAACCAT-TATTTGG-C-T---GCTTTGAA-GAGGGTGCA--CC--A-ATGTATA-TGGGGGGGGGG-A--CGGGGG-AGGTAA--AGTAATN----AGTAGCAACATT-TCAA--AGT--CTACGT-TCAANGGG---GTG-CA-C-CT-------------C--TTC-CTGTGTTGATTTTCG--CCAATATCAG--GC-TCCACTNA-------TATA-----CATCAGTTGTTACA-G--GAGCAAC-GAAGT-CAA--A--ATG-TA-ATAATTTAAATT--A-CATT-GA--ATA--T-----CCGCAA--AC-------------CA-ATNTC---------GA-TCA--TNAC-N-TT-TTTCATCNCCA-CCGCTTTGACAG-T-CCATATTTATNCGGGGAACATAT-A-ATA--G--AGGTC-A----------G-C---TGCG-TTCGAGGAGG-GAATTA--------ATT--T--------------TTTC-CTGTTATAAAAGTTTGA--TATTTG---T-TT-G-T-TATA-CTT-ATACAATATCAAGTGGCGGA-TCCAGA--GAGG-AGGGGGGG-GGGGGTG-GTCTAAGG-------GG-GTCGCGACCC----CACCTTT-CG-TT-AAANAA------TTTGCTAAATA-AA--T--TCAAAATG-TAGACA--C--CC-----------TTTC-AAACA-TT-C-C--GGA-TCCG---C-C-CT-GC---AATTT------GTT-G-----T-CGTCTGTGTGGCTTCGCGCATGCTTATAGA-AAATTGTAAAAA--TGCGGAACC-ATAACTTCTG-CANAGTTC-GGAT-CAAGGGGTATGTTTTTGATNAATTNAT--AACTAGCCAAGCT---AATNA--AAATAAA-TG-C-CT--AT--TG-AAT-TT-TC--A--TATAGTAGC-CTTGCATTGCATGCACCAAC-CATCTATAATTA-TATTATGTAACANNCC----------GACTATTATCTATGGAAATGCCGAATAGAAATTTTCAGCTCGTTAATTTAATAGTATNNNNNNNATAGATTCTGTCTGGTCTG-TGGTGTAAACAAACATAAGGAA--TAC-AAATCAATC-AATGCCTTCCTTGACAATACAGATACCATTTAATTCATTAGGTAGTA-CTG-ANTGTAC-TG----A--TAGCCGG-GTACT-GTA-TTGAAGGA-AAACAAA-ACTTTTTA----CATTTCAAGCCAAAGA---AAGGTT---TGTTC-AAA-TCTTCTTTTTT-TTTAGATG-ATCCGAAAATTAGAGAAAAT---TGGC-TTTG-AAAATATTTATTTG-CG-TTTT-A-TCCGAAGA-TTTTT--TCG-T-TTATTT
Reference ( family-271 ) : CTGGTAT--GCTAT--TTAANATTATNTCT-GCT-AT---AAAATTGGTT--GATAT-----TATTT-GTGACAAATCCGA-T-G---ATTTGTAA--ATTCGGGCA--TGTCTCGAATT-AACGTAGACCAT-TATTTGG-C-T---GCTTTGAA-GAGGGTGCA--CC--A-ATGTATA-TGGGGGGGGGG-A--CGGGGG-AGGTAA--AGTAATC----GGTAGCAATATT-TCAA--AGT--CTACGT-TCAANGGG---GTG-CA-C-CT-------------C--TTC-CTGTGTTGATTTTCG--CCAATATCAG--GC-TCCACTTA-------TATA-----CATCAGTTGTTACA-G--GAGCAAC-GAAGT-CAA--A--ATG-TA-ATAATTTAAATT--G-CATTAGA--ATA--C-----CCGCAA--AC-------------CA-ATNTC---------GA-TCA--TNA--N-TT-TTTCATCNCCA-CCGCTT---CA--T-CCATATTTATNCGGGGAACATA--A-ATA--G--AGGTC-A----------G-C---TGCG-TTCGAGGAGG-GAATTA--------ATT--T--------------TTTC-CTGTTATAAAAGCTTGA--TATTTG---T-TT-G-T-TATA-CTT-ATACAATATCAAGTGGCGGA-TCCAGA--GAGG-AGGGGGGG-GGGGGTGCGTCTAAGG-------GG-GTCGCGACCC----CACCTTT-CA-TT-AAANAA------TTTGCTAAATA-A---T--TCAAAATG-TAGACA--C--CC-----------TTTC-AAACA-TT-C-C--GGA-TCCG---C-C-CT-GC---AATTT------GTT-G-----T-CGTCTGTGTGGCTTCGCGCATGCTTATAGA-AAATTGTAAAAA--TGCGGAACC-ATAACTTCTG-CAGAGTTC-GGAT-CAAGGGGTATATTTTNNATNNATTCNT--AATTGGCCAAGCT---AATNA--AAATAAA-TG-C-CT--AT--TG-AAT-TT-TC--AACTATAGTAGCACTTGCATTGCATGC-CCAAC-CATCTATAANTA-TATTATGNNNNNNNNN----------NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATAGATTCTGTCTGGTCTGNTGGTGTAAANAAACATAAGGAGATTACAAAATCAATCAAATGCCTTCTTTNACAANACAGATANNNNNNNNNNNNNNNNNNAGTA-CTG-ATTGTAC-TA----A--TAGCTGG-GTATT-GTA-TTGAAGGA-AAACAAA-ACTTTTTAC---CATTTCAAGCCAAAGA---AGGGTT---TGTTC-AAA-TCTTCTTTTTT-TTTAGATG-ATCCGAAAATTAGAGNAAAT---TGGC-TTTG-AAAATATTTATTTG-CG-TTTT-A-TCCGAAGA-TTTTT--TCG-T-TTATTT
gi|1 : TAT--CTTAT--TTAAAATTATTTCTTGCT-AT---ATAATTGGTT--GATAT-----TATTT-GTGACAAATCC---T-A---ATTTGTAATTATTCAGGCA--TGTCTCGAATT-A-CGTAAATAAT-T-TTTGG-C-T---GCTTTGAA-GAGGGTGCA--CCGCA-ATGTATACTGGGGTGGGGG-AGCCGGGGG-AAGTCA--AGTATCC----GGTAACAACATT-CCGA--AGT--CTACGTGTCAATAGGTT-GTG-CA-C-CT-------------C--TTC-CTGTGTTCATTTTCGGTCCAATATCAGTTGC-TCCACTTA-------TACATGGAACATTAGTTGTTACA-GTTGAGCAAC-GAAGT-CAATTA--ATGCTA-ATAATGTATTTT--T-TTTAAGA--ATATTC-----CCGCAG--AC-------------TA-ATTTC---------GA-TCA--TCA--T-TTATTTCATCTCCAGCTGCTTTGACAG-TGCCATATTCATCCGGGGAACATAT-A-ATA--ACTAGGTC-ACGTCATTCAAG-CC--TGTG-CTCGAAGAGA-GAATTA--------ATT--T--------------TCTC-CTGTTATA-----TTGGATTATTTG---T-TT-A-T-TATA-CTC-ATAAAGTATCACGTGGGGGAATCCAGAAAGAGGTAGGGGGGGCGGGGGTGTGTCTAAGG-------GG-GTCGTGACTC----CACCTTTTCAGTT-AAATAA------TTTGCTAAATA-AA--T--TCAAA-TG-TAGACA--C--TC-----------TTTC-AAACA-TT-C-T--GGA-TCTG---C-C-CT-GC---AATTT------GTT-G-----T-CGTCTGTGTGACTTCGCGCATGCTTATAGG-ATATTGTTAAAA--TGCGGAACT-ATTACTTCTG-CATAGTTC-GGATCCAAGGGGTATGTTTTTGATTAATTTTT--AATTAACTAAGCTTGGAATTATGAAATAAATTG-T-CT--ATGCTG-AAT-TTATCAGAGTTACATTAGC-CTTGCATTGCA--C-CCAACGGATCTATAATT--TAT---------AGTC----------NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGATTTTGTCTGGTTTGGTGTTGTTAACAAACATAAGGAA--TAC-CAATCAATCAAATGTCTTCCTTGACAATA-AGATACCATTTAATTCATTAGGTAGTATCTGTATTGTAT-TA----A--TAGCTGG-GTGTT-GTA-TTGAAGTA-AAACAAATACTTTTTACGGATGTTTCAAACCAAAGATGGAGGGTT---TGTTC-AAA-TCTTTCTTTTT-TTTAAATG-ATCCGAAAATTAGAGAAAAT---TGGC--TTG-AAAATATTTATTTG-TG-TTTT-A-TCCGAAGATTTTTT--TCGTT-TTATTT
gi|10 : ctaA-CTG-ATTGTAC-TACTGAG--TAGCTGAAGTATTTGTA-TTGAATGA-TAACAAA-ACTTT-------CATTTCAAACCAAAGA---GAGGTT---TGTTC-AAAATCTT----TTT-TTTAAATG-ATCTGAAAATTCGAGAAAATGCATGTC-TTTG-AAAATATTTATTTGCCGTTTTT-A-TCC-AAGA-TTTTT--TCG---TTATTT
gi|11 : AGTA-CTG-ATTGTACCTA----A--TAGCTGG-GTATT-GTA-TTGAA-GA-AAAC-AA-ACTTT-------CATTTCAAGCCA---A---AAGGTT---TGTTCAAAA-TCTTCTTTTTTGTTTAGATGAATCCGAAAATTAGAGAACAA---TGGCTTTTG-AAAATATTTATTTG-CG-TTTTGA-TCCGATGA--TTTT--TCG---TTATTTaatacatttaacatctgtttcctagtcttttttacctcttaatcttatctgacacagatgaagttgatatccttttggaagttct
gi|12 : AGTA-CTG-ATTGTAC-TA----A--TTGCTGG-TTATT-GTA-TTAGAGGATATACAAA-AAACTTTA----CATTTCAGGCCAAA--------GTTACATCTTC--AA-TCTTCTTTTGT-TTTAGAT--ATC--GAAATTAGAGTAAAT---GGGC-TTTG---AATAT--------CG---TT-AGTCCGAAGA-TTTTTCATCG-TATTAataacatttaacatctgtttctatgtctctcccccccccttttattttattctgacacgatgagttgatatccttttggaagttttt
gi|13 : aaAA--AATAATG----AGT-----TATT-TTCA--AGT--CTATGT-TCAAAGGGTACGTGGCA-C-AT-----------------TC------TTGATTT-CG--GCAGTGTCAG--GC-TCCACTGA-------TATA--------CAG-TGTTACA----GAGCAAC-AAAGT-CAA--A--AGG-T--TTAACTTGAATTTGA-CAACACA--AT---------CTGCAAACAC-------------CA---GCC---------CA-TAAATTCAC-A-TT-TCTCATCACCA-TCGCTaatacattaacattctgtttctagtctctctcccccccccctacttatcttattctgacacagatgaaggattattcctcttttggaattctccc
gi|14 : tcggcctggtttggaagaggatgcaaaggcttcagttcaaaaattaatgtgtatatgcggCTAGTATAAGCTAT--T-AATGTTAT--CT-GCTTAT---AAAAATGGTT--GATAT-----TATTTTGTGACAAATCCAG-T-A---ATTTGGTA--CTTCGGGCA--TGT-TCGAATT-AACGTAA--CAT-T-TTTGGAC-T---GCTTT
gi|15 : tgtggggcgtaattaatatgtccgcggcattgcagtgcgttttcgggggtgggtccagtggtatcgccatgtgaaC-CT-TTATA---GCT-GA--TATTTGA--TATT-G-CCTA-A-TTTGATACAA-ATTAAGTGGTGGAAT-------GAGG-AGGGGAGG-------GCGTTTA--G-------GG-GT--TGACC-------CCCTT-AG-TT-AAAATA------TTTGGTAAACG-AAATT--TCTGAATG-T-GACATGC--CC-----------TTCCTACACA-TTCC-C--GGA-T-CG---CGT-CT-GCCT-CGTTT------GTT-GGGCTTT-CGTGTATGTG
gi|16 : CTAGTAT--ACTAT--TTAAGATT-TATCT-GCT-AT---AAAAT--GTT---ATAT------ATTT-GTGACAAATTCCA-T-GTATATTTGTAA--CTTCGGGCA--TG--TCGAATTAAACGTAGACCATGTATTTGct
gi|17 : atgtgggacgttaataaaatatgtctgcggcatgtgcagtctgcgttcgggggggtcgatggtaatcgccatgtaT-------------C--TTT-CT-TATGGCTATTCGGTCCAATATCAT--ACGTTCACTGA-------TATA--------CAG-TGTTATACA--GAG-AAG-GAAGTAAAA--A--ATG-TA-A-AAC----ATT--A-CAC--GA--A-A--T-----CCACAA--AA-------------CACATCTCATAGTTATGAA-TCA--TTACCA-TT-TTTTATCACCA--CGTTT---CAGTC-CCATATGTATGTGGGGGCCATtt
gi|18 : tTTTGTGTGGTTTCGCGCATGCT--TAGA-AA----TAATAA--T---GAA-C-AGAACCNNNN-NNNNNNNN-NNNN-NNNNNNNNNNNNNNNNNNNNNNNNNNN--NNNNNNNNNNNNN---NNNNN--NNNNATG-TG-CTCT--AT--GG-AAT-TT--------CACAGTA-------TATTGCATGCACCAAA-TATCTATcgtaaaaaaa
gi|19 : AA--AGTAATTCATGAGTAGCATTATT-TCAA---GT--CTATGT-TCAAGGGG---GTG-AA-C-CTT------------C--TTT-CTATCTTGATTT-CG--CCAA----------------TTA-------TATC-----C--CA-TTGTTACA----GAGCAACGGAAGT-CAA--A--Ata
gi|2 : acaaaggtttcagttcaaaaatgtataatgcggTTTGG-CCT---GCTTTGAAAGAGGGTGCA--C---A-ATGTAAA-TGGGGAGGGGG-----GGGGGTAGGT------TAATC----GGTAACAACATT-TCAA--AGT--CTACGT-TCATTGGG---GTG-CA-C-CTTCTTTCTGTGTTTC--TTT-CTGTGTTCATTT-CG--CCAAT-TCAG---C-TCCACT----------GTA-----TATCAGTGGTTACA-G---AGCAA--GAAGT-CAA--AGAATG-TA-A-AATTTAAATT--G-CATTTCA--ATAAAT-----CCGC-------------------CA-ACATC---------GAATCA--TAA--A-TT-TTTCATCTCCA-T-GCTTTGACA--T-CCATATTTATT-GGGGAACATATAA-ATA--G------C-A----------G-CCTTTGC--TTCGAAGAGAAGAATTA--------ATT--T--------------CT-C-CTGTTATAA--GTTTGA--TATTTG---T-TT-A-T--ATA-CTT-A--CAATA-CAAGTGGGGGA-TCCAGA--G--G-AGGGGGGG-GGGGG---GTCTA--G-------GG-GTC-CGACCCACCCCACCTTT-CA-TT-AAAAAAAATAAATTTGCTAAATACA---TAGTCAAAATG-TAGACA--C--CC-----------TTTC---ACATTT-C-C--GGATTTCGT--C-C-CT-GC----ATTT------GTT-G-----T-CGTCTGTGTGACTTCGCGCTAGCTTATAGA-AAAAT-TAAAAA--TGC-GAACC--TA--NNNNN-NNNNNNNN-NNNN-NNNNNNNNNNNNNNNNNNNNNNNNNNN--NNNNNNNNNNNNN---NNNNN--NNNNNNT-TG---CTAAAT--TGAAAT-TT-TC--A---ATAGTA-------CATTGCATGC-CCAAC-CATCTATAAATat
gi|20 : GGGGA-ACGTAA----TAATA----AGTCGCAGCATG-TCA----GT--CTGCGT-TTTCGGGG---GTG-Ctagtacnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnttaaag
gi|22 : gtGGGGG-GGGTAT--AGTAATA----AGTAACAATATTATCAT--AGTG-CAACGT-TTGCACAG---GTG-CATC-CT-------------C--TTCTCTGTGTTggtgcttgtgagtggtaatctccatgtatcactattaaattacctgc
gi|23 : ggAGTA-ATG-AATGTAC-TG----A--TAGCTGG-GTACT-GTA-TTGAA-GA-AAATAAA-A--TGTTA----CATTTCAAGCCAAA
gi|24 : atcaaAGTA-TTT-AATGTAC-TG----A--TAGCCGG-GTACT-GAA-CTGAAG-A-AAACAAA-AC--TTTA----CATTTCAAGCCA
gi|25 : tcaaAGTA-CTG-AATGTAC-TG----A--TAGCCGG-GTACT-GTA-TCGTAGCA-AATCAAtaa
gi|26 : taatcaAGTA-CTT-AATGAAC-TG----A--TAGCCGG-GCACT-GTA-gcc
gi|3 : aatcaaCTTGTCT--ACTATAATTGAA--TATATCT-GCT-AT---GAA-TTGGTT--AATAT------ATTT-GTGACAAATCGAA-T-G---ATTTGTAA--AT-----CAATTATATCGATTT-AAC--ACACCAT-TAGTCGGAC-T---GATTTGAA-GAGGGTGCA--CA--A-ATGTATA-TTAGGGAA----A--CG--------TAA---GTAATC----GGTAGC-----T-TC-------------GT-TCAACGTG---AAG-GA-CGTT-------------C--TTT-CTATGTTGATTT-CG--CCGATATCAG--GC-TACACTGA-------TGTA-------TCAGT-GTTAGA-G--AA-TAAC-GAAGT-CAC--A--ATG-TATATAATTTAAATT--A-CATTGGATGA-A--T-----CCGCAA--AC--------------A-AT-TG---------AA-TCA--CAC--CATT-TTTCATTCCCA-CCGCTT---CAG-T-CCATATTTTTGTGGAGAACA-A--A-ATAAAG--AGATCTA----------G-C---TGCA-TTTGAGGAGG-GATTTATTTATGCTATTATT--------------TTTC-CTGTCATAAAAGCTTGA--TAATTGATAT-TT-G-C-TGCATTTT-GTACAAT-TC-AGTGGCGGA-TCCAGA--G-----GGGAGGN-NNNNNNNNNNNNNNNN-------NN-NNNNNNNNNN----NNNNNNN-NN-NN-NNNNNN------NNNNNNNNNNN-N---N--NNNNNNNN-NNNNNN--N--NN-----------NNNC-ATACA-TC-C-C--TGATTCCG---C-CTCT-GC---A-------------------------CTTTGTGGCTTCGTGCATGCTTA---G-AAATTATAAAAA--AGCGGAA-C-ATAACTTC-G-C--AATTC-GGAT-CAA--GGT---TTTTTTATCCATTCAT--AA--GGCCAAGCT---AATCA--AAATAAA--G-T-TT--AT--Tc
gi|4 : atgtgggggactaatagatatgtcgacgcattacagcatgcgttcagggtgtgttggtttgaggtggataatctccaatcccGTAT--ACTGT--T--AAATTAT--CT-GGT-AT---AAAA--AGTTA-GATATACATGTATTT-GTGGAAAA-CCGAGT-G---ATTTGCAA--A-TCGGGCA--TG--TCG-----AACGTAA--CAT-TATTTGT-CGG---GTTTTAAA-GAGGGTGCACGCC--ATATGTctgcatccctgtgtaacactttatacaca
gi|4 : atgttgcagctgcgttcgagggatttatctccatgcat-A--TGGGGA-AAATAA--AATAATA----AGCAGCTACATT-TCAAGTAGTAACTACAT-TATACGGA---GTG-CA-C-CT-------------T--CTCTCTATATCAATTTTT---CCAATATCAG--GC-TCCACTTACATAATGTATA-----TATTCG-TGTTACA----GAGAAAT-TAAGT-CAA--A--CTG-TA-A-AATTTAAAAT--ATCATT-GC--ATA--CGCAATCCGTAA--ACACTTGAATCATGACA-ATAT-------------TCA--TTAC-T-TT-TTTCATCACCA-CCGCTT---CA--G-CC----TTATA-----AATACC--G-ATA-----AGGT---------------C---TGTGTTTCGGGGAGG-GAATTT--------ATC--TATGCTTATATGGCATTTCTCTGTTATAAAAGTTTG------TTG---T-TTCGTT-TATA-CCT-ATACAAT-TC--GTGACG-----------GAGG-GGGAGAGG-GGGGGT--ATTCAAGGTATTCAAGGTGTCGGG--------CACC--------T-AAAAAA------TTC-CT----------T--T-----TG-TAGACT--C--CCTTAATTCCCCTTTTC-AAAAA-TT-CTT--GAA-TCCGCACC-C-TT-GTGAAAATCCAAGCAGGAT-G-----T-CGTTTGTTTGGCTTTGCGCATAC-TGTAGA-AAtttaaaaggtttcagttcaaacatgttatatggggaaaataaaataataagcagctacatttcaagtagtaactacattatacggagtgcaccttctctctatatcaatttttccaatatcaggctccacttacataatgtatatattcgtgttacagagaaattaagtcaaactgtaaaatttaaaatatcattgcatacgcaatccgtaaacacttgaatcatgacaatattcattacttttttcatcaccaccgcttcagccttataaataccgataaggtctgtgtttcggggagggaatttatctatgcttatatggcatttctctgttataaaagtttgttgtttcgtttatacctatacaattcgtgacggagggggagagggggggtattcaaggtattcaaggtgtcgggcacctaaaaaattccttttgtagactcccttaattccccttttcaaaaattcttgaatccgcacccttgtgaaaatccaagcaggatgtcgtttgtttggctttgcgcatactgtagaaataatattgaag
gi|5 : atgttgcagctgcgttcgagggatttatctccatgcatgtatactgttaaattatctggtataaaaagttagatatacatgtatttgtggaaaaccgagtgatttgcaaatcgggcatgtcgaacgtaacattatttgtcgggttttaaagagggtgcacgccatatgttttaaaaggtttcagttcaaacatgttatC-A----------GTC---TGCG-TTCTAGGATG-AAATTT--------ATA--T--------------ATCT-TTGTTATAAAAGTTTGA---ACTTC---G-AT-A-T-TTT---TT-TTACAATTT--AGTTGCGGG--CCAG---------GGGGTGA-AAAGG---ATCTA-----------G-GTCG-GACCC------CCTTT-CG-CTAAAATAAT-----TTTGTTAAATA-AATGT--AAAAAAAGTTAGACA--C--CCCCCCCCG----TTTC-AAA-A-TT-C-CT-GGA-TCCG---C-C-CT-GC---AATTG------CGC-G-----T-CG--TGTG-GGCTTCGCGCATGCTTA---A-AAAATAT-AAAA--TGCGGAACC-taatattgaag
gi|6 : gtaataaatattatctttaCTTT-GC-TG-AAACAT------TATGTTAAAT---------TTAAAATG-TAGACA--C--TC-----------TT-C-AAACA-GT-C-CT-GGA-TCTGT--C-C-CT-GC---AATTT------GTTTG-----TGCGTCTGTGTGACTCGACGCATGCTTATAGACAAATTGAAAAAAGATGCGGAACC-ATAACTTTTGTCAGAG--CAGGAT-CAAGG---ATATTTTGGATGAATTAATTAAACTAG---AGCT---AATAA--AAATAAA-TATC-CT--ATA-TG-AAA-TT-------CTATAGTAGCACTTGCAT--CA----CCAAC--ATCTA-AATTA-TATTATGNNNNNNNNNNNNNNNNNNN----------NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATAGATTCTGTCTGG-----TGGTGTAAAAAAACATAAGGAA--TAC-AAATCAAT--AATG----CTTTTACAATACAtannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntttgcttttgatatttcatagtacatgcatggcaccaccaatccatattacttaatattgggtgccataagcaggctgcaaatcggatagaaaatttcattcgttttaa
gi|7 : A------TTTG-TAAAT------T--TCAAAATG-TAGACA--CTTCT-----------TTCC-AAACA-TT-C-CCTGGA-TCTG---TTC-CTAGC---ATTTTT-----GTT-G-----T-CGTCTGT-TGA--TCGCGCTCG--TATAGA-AA-TTGAAAAAA--TGCGGAACCNNNNNNNNNNN-NNNNNNNN-NNNN-NNNNNNNNNNNNNNNNNNNNNNNNNNN--NNNNNNNNNNNNN---NNTTG--ATATA----------------TG-AATCTT-TC------ATAGTAA---TTG---TGCATGCACCAGC-CATCTAT-ATTATTATTATGTAACATTCT----------GACTATTATCTATGGAAATGCCGAATAGAAATTTTCAGCTCGTTAATTTAATAGTAT----------GATT------GATCTGTTGGTGTAAACAAAC-TAAGGAGATTACAAAATCAATC-AATGCCTTC-TTGACAAAACAGATAaga
gi|8 : tttgctgactacGTAT--GCTAT--TCAAT-TTATCT-T-GTT-TTTCCAAAAT--GTTTGGATAT------ATCT-G--ACAAA--CGA-TTG---ATTTGTAA----TCTGGCA---ATACCGA------CGTAG--CAT-TATTTGG-C-CTTGGCTTTGAA-AAGGACGCA--C---G-ATGTATA-TGGGGGAAAGGTA--CCG-------TAAGCAGTAA-------GTAACAATGTT--CAA--A-------CG-------GGG---GTG-CA-C-CT-------------TCTTTCTCTATGTTGAATTTCG--C-AATATCAG--GC-TCCAgaa
gi|8 : taagcattgtacctgcgttgggggggggggggggggggtattttcatGGGGAACATA--ACATT--G------C-A----------GCC---TGCG-TTCAA--AGG-AAATTA--------aacaaagtaaaatggggaacataacattgcagcctgcgttcaaaggaaattagctacaatgtatactgtaatttttt
gi|9 : taagcattgtacctgcgttgggggggggggggggggggtattttcatgtatgctattcaatttatcttgtttttccaaaatgtttggatatatctgacaaacgattgatttgtaatctggcaataccgacgtagcattatttggccttggctttgaaaaggacgcacgatgtatatgggggaaaggtaccgtaagcagtaagtaacaatgttcaaacgggggtgcaccttctttctctatgttgaatttcgcaatatcaggctccaaacaaagtaaaatAGTA-CT--ATTGTAC-TA----AAGTAGCTGG-GTAAT-GTAATTGAAG----AATCAA-ACTTT--AC----ATTTCAAGCCGAAAA-----GGTT---TGTTT-CAA-TCTTCTTTTTG-TTTAGATG-ATCCGAAATTAAGAGTAAA----TGGC-TTTGAAAAATATTTATTTG-CG--TTG-A-TC--GAGA-TTTTT--TCG---TTATTTgctacaatgtatactgtaatttttt
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|21 ): ATGTGGGGGACGTAAATAAAATAAGTCGCGGCATTGCAGTCTCCCTGCGTTCGGGGGTGGGTGAGTGGGTAATCTCCATGTATACTATTAAATTTATCCT
Alignments
lowQualScore : 111 1 2222 111 111 111 222222 111111111 11111 22 111 3333333333333333333333333333333333333 333333 111 6666666666666 11111 222222222 111 3333333333333333 1 11111 1111111 3333333333333 2222 111 1111 777777777777777777777777777777777777777777777777777777777777777 111 333 1 22 1 77777777777777777777777777777 11 111 66666666666666666666666 22222222222222222 2222 55555555555555 4444444444444444444444 22222222222222 111 111111 222222222222222 11111 44444444444 11 1 22222 222222222222222222222222 1111111 11111111 11111111111 11111111111 555555555555555555555555555555555555555555555 1 1111 111 333333333333333333333333333 111 5555555555 11 33333 11 1 22 11 11 11 11111111 1111 444444 111 1 2222 11 11 333
lowQualScore : 2 000 3 22 2222 6 111 555 666 444444 6 7 666666666 88888 22 1 777 777 6 6666666666666666666666666666666666666 8 000000 444 0 8 2 1 3333333333333 1 7 00000 4 22 4 111111111 4 777 333 4 5 5 4444444444444444 3 5 77777 2 888 5 1 8888888 9999999999999 7777 3 88 77 8888 6 777 3 3 3333 777777777777777777777777777777777777777777777777777777777777777 99 1 888 1 111 000 6 00 8 0 55555555555555555555555555555 11 8 444 6 33333333333333333333333 3 8 777 99 1 44444444444444444 6 3333 1 55555555555555 9999999999999999999999 55555555555555 3 222 6 1 999999 2 0 666666666666666 66 1 22222 66 66 00000000000 2 5 0 5 5 5 66 0 00000 5 5 999999999999999999999999 5 0 3 5 66 555 77 0 4 6 6 3 5 0000000 5 22222222 0 11 11 00000000000 00000000000 111111111111111111111111111111111111111111111 1 3 0 3 2222 77 666 888888888888888888888888888 1 99 2 8 222 5555555555 11 66666 7 88 3 00 88 6 4 55 1 4 777 00 0 4 4 4 44 5 33333333 2222 333333 444 5 6 3 8 8 3 1 0000 0 8 88 0 8 88 8 8 5 88 11 666
lowQualScore : . ... . .. .... . ... ... ... ...... . . ......... ..... .. . ... ... . ..................................... . ...... ... . . . . ............. . . ..... . .. . ......... . ... ... . . . ................ . . ..... . ... . . ....... ............. .... . .. .. .... . ... . . .... ............................................................... .. . ... . ... ... . .. . . ............................. .. . ... . ....................... . . ... .. . ................. . .... . .............. ...................... .............. . ... . . ...... . . ............... .. . ..... .. .. ........... . . . . . . .. . ..... . . ........................ . . . . .. ... .. . . . . . . ....... . ........ . .. .. ........... ........... ............................................. . . . . .... .. ... ........................... . .. . . ... .......... .. ..... . .. . .. .. . . .. . . ... .. . . . . .. . ........ .... ...... ... . . . . . . . .... . . .. . . .. . . . .. .. ...
lowQualScore : 5 222 8 77 5555 7 777 888 888 000000 7 3 777777777 77777 22 7 333 777 7 7777777777777777777777777777777777777 0 222222 000 8 0 5 0 7777777777777 7 2 44444 4 99 4 111111111 4 111 999 4 0 0 1111111111111111 3 4 55555 0 222 0 0 6666666 4444444444444 3333 0 77 99 0000 7 555 2 2 7777 555555555555555555555555555555555555555555555555555555555555555 22 0 777 0 333 888 0 22 0 0 00000000000000000000000000000 22 0 000 6 22222222222222222222222 8 0 000 88 8 88888888888888888 7 2222 0 88888888888888 2222222222222222222222 00000000000000 3 000 7 0 444444 8 2 888888888888888 99 6 00000 99 99 00000000000 1 0 2 0 0 0 99 0 88888 0 0 111111111111111111111111 0 1 2 0 99 444 99 7 3 4 4 7 7 4444444 7 77777777 1 11 44 33333333333 77777777777 111111111111111111111111111111111111111111111 0 2 8 2 7777 55 888 222222222222222222222222222 8 88 5 0 222 0000000000 00 00000 3 33 3 00 77 7 4 66 0 4 888 66 7 4 4 4 44 0 99999999 1111 000000 000 6 0 2 0 0 2 4 0000 8 0 88 8 0 66 0 0 0 88 00 444
consensus : CTAGTATA--CTATTTAANATTATTC--TGCT-AT---AAAATTGGTT--GATAT-----TATTT-GTGACAAATCCGA-T-G---ATTTGTAA--ATTCGGGCATGT-TCGAATT-AACGTAA-ACCAT-T------ATTT------GG-C-T---GC----------TTTGAA-GAGGGTGCA--CC--AA---TGTATA-TGGGGGGGG--A--CGGGGG-AGGTAAAGTAATC----GGTA-GCAACATT-TCAA--AGT--CTACGT-TCAAN--GGG---GTG-CA-C-CT-------------C--TTC-CTGTGTTGATTTTCG--CCAATATCAG--GC-TCCACTGA-------TATA-----CATCAGTTGTTACA-G--GAGCAAC-GAAGTCAA--A--A-TG-TA-ATAATTTAAATT--A-CATT---G-AAT-----A--T--CCGCAA--AC-------------CA-ATNTCG---------A-TCA--TNACN-TTTTTCATCNCCA-CCGCTTTGACAGT-CCATATTTATNCGGGGAAC-ATA-TAA-TAG--AGGTC-A----------G-CC--TGCG-TTCGAGGAGG-GA---ATTTAT-------TT--------------TTTC-CTGTTATAAAAGTTTGAT-ATTTG---T-TT-G-T-TATA-CTT-ATACAATATCAAGTGGCGGA-TCCAGA--GAGG-AGGGGGGG-GG------GGGTG-GTCTAA-GGGGTCGCGACCC----CACCTTTC--GTT-AAAAAA------TTTGCTAAA---------TAAA--T--TCAAAA----TGTAGACA--C--CC-----------TTTC-AAACA-TT-C-C--GGA-TCCG---C-C-CT-GC---AATTT------GTT-G-----T-CGTCTGTGTGGCTTCGCGCATGCTTATAGA-AAATTGTAAAAA--TGCGGAACCATAACTTCTG-CANAGTTC-GGAT-CAAGGGGTATGTTTTTGATNAATTNAT--AACTAGCCAAGCT---AA-TNA--AAATAAN-TG-C-CT--AT--TG-AAT-TT-TCA----TATAGTAG--CTTGCATTGCACGCACCAA-C-CATCTAT-AATT-A-TATT--ATGCNACAAGCCGGCTATTATCTATGNAAATGCCGGATAGAAANTTTCAGCTCGTTAATTTAATAGTATNNNNNNNATAGATTCTGTCTGGTCT-G-TGGTGTAAACAAACATAAGGAA--TAC-AAATCAATC-AATGCCTTCCTTGACAATACAGATACCATTTAATTCATTAGGTAGTA-CTG-ANTGTAC-T---GA--TAGCCGG-GTACT-GTA-TTGAAGGA-AAACAAA-ACTTTTTAC----ATTTCAAGCCAAAGA---AAGGTT---TGTTCAAAATCTTCTTTTTT-TTTAGATGA-TCCGAAAATTAGAGAAAAT---TGGCTTT-G-AAAATATTTATTTG-CG-TTTT-A-TCCGAAGA-TTTTT--TCG-T-TTATTT
Reference ( family-271 ) : CTAGTATA--CTATTTAANATTATTC--TGCT-AT---AAAATTGGTT--GATAT-----TATTT-GTGACAAATCCGA-T-G---ATTTGTAA--ATTCGGGCATGT-TCGAATT-AACGTAA-ACCAT-T------ATTT------GG-C-T---GC----------TTTGAA-GAGGGTGCA--CC--AA---TGTATA-TGGGGGGGGGGA--CGGGGG-AGGTAAAGTAATN----AGTA-GCAACATT-TCAA--AGT--CTACGT-TCAAN--GGG---GTG-CA-C-CT-------------C--TTC-CTGTGTTGATTTTCG--CCAATATCAG--GC-TCCACTNA-------TATA-----CATCAGTTGTTACA-G--GAGCAAC-GAAGTCAA--A--A-TG-TA-ATAATTTAAATT--A-CATT---G-AAT-----A--T--CCGCAA--AC-------------CA-ATNTCG---------A-TCA--TNACN-TTTTTCATCNCCA-CCGCTTTGACAGT-CCATATTTATNCGGGGAAC-ATA-TAA-TAG--AGGTC-A----------G-C---TGCG-TTCGAGGAGG-GA---ATTAAT-------TT--------------TTTC-CTGTTATAAAAGTTTGAT-ATTTG---T-TT-G-T-TATA-CTT-ATACAATATCAAGTGGCGGA-TCCAGA--GAGG-AGGGGGGG-GG------GGGTG-GTCTAAGGGGGTCGCGACCC----CACCTTTC--GTT-AAANAA------TTTGCTAAA---------TAAA--T--TCAAAA----TGTAGACA--C--CC-----------TTTC-AAACA-TT-C-C--GGA-TCCG---C-C-CT-GC---AATTT------GTT-G-----T-CGTCTGTGTGGCTTCGCGCATGCTTATAGA-AAATTGTAAAAA--TGCGGAACCATAACTTCTG-CANAGTTC-GGAT-CAAGGGGTATGTTTTTGATNAATTNAT--AACTAGCCAAGCT---AA-TNA--AAATAAA-TG-C-CT--AT--TG-AAT-TT-TCA----TATAGTAGC-CTTGCATTGCATGCACCAA-C-CATCTAT-AATT-A-TATT--ATGTAACANNCCGACTATTATCTATGGAAATGCCGAATAGAAATTTTCAGCTCGTTAATTTAATAGTATNNNNNNNATAGATTCTGTCTGGTCT-G-TGGTGTAAACAAACATAAGGAA--TAC-AAATCAATC-AATGCCTTCCTTGACAATACAGATACCATTTAATTCATTAGGTAGTA-CTG-ANTGTAC-T---GA--TAGCCGG-GTACT-GTA-TTGAAGGA-AAACAAA-ACTTTTTAC----ATTTCAAGCCAAAGA---AAGGTT---TGTTCAAA-TCTTCTTTTTT-TTTAGATGA-TCCGAAAATTAGAGAAAAT---TGGCTTT-G-AAAATATTTATTTG-CG-TTTT-A-TCCGAAGA-TTTTT--TCG-T-TTATTT
gi|1 : CTA-TATC--TTATTTAAAATTATTTCTTGCT-AT---ATAATTGGTT--GATAT-----TATTT-GTGACAAATCC---T-A---ATTTGTAATTATTCAGGCATGTCTCGAATT-A-CGTAA-ATAAT-T-------TTT------GG-C-T---GC----------TTTGAA-GAGGGTGCA--CCGCAA---TGTATACTGGGGTGGGGGAGCCGGGGG-AAGTCAAGTATCC----GGTA-ACAACATT-CCGA--AGT--CTACGTGTCAAT--AGGTT-GTG-CA-C-CT-------------C--TTC-CTGTGTTCATTTTCGGTCCAATATCAGTTGC-TCCACTTA-------TACATGGAACATTAGTTGTTACA-GTTGAGCAAC-GAAGTCAATTA--A-TGCTA-ATAATGTA--TT--T-TTTTTAAG-AAT-----A--TTCCCGCAG--AC-------------TA-ATTTCG---------A-TCA--TCATT-TATTTCATCTCCAGCTGCTTTGACAGTGCCATATTCATCCGGGGAAC-ATA-TAA-TAACTAGGTC-ACGTCATTCAAG-CC--TGTG-CTCGAAGAGA-GA---ATTAAT-------TT--------------TCTC-CTGTTATA----TTGGATTATTTG---T-TT-A-T-TATA-CTC-ATAAAGTATCACGTGGGGGAATCCAGAAAGAGGTAGGGGGGGCGG------GGGTGTGTCTAAGGGGGTCGTGACTC----CACCTTTTCAGTT-AAATAA------TTTGCTAAA---------TAAA--T--TCAAA-----TGTAGACA--C--TC-----------TTTC-AAACA-TT-C-T--GGA-TCTG---C-C-CT-GC---AATTT------GTT-G-----T-CGTCTGTGTGACTTCGCGCATGCTTATAGG-ATATTGTTAAAA--TGCGGAACTATTACTTCTG-CATAGTTC-GGATCCAAGGGGTATGTTTTTGATTAATTTTT--AATTAACTAAGCTTGGAA-TTATGAAATAAATTG-T-CT--ATGCTG-AAT-TTATCAGAGTTACATTAGC-CTTGCATTGCAC---CCAA-CGGATCTAT-AATT---TAT-----------AGTCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGATTTTGTCTGGTTTGG-TGTTGTTAACAAACATAAGGAA--TAC-CAATCAATCAAATGTCTTCCTTGACAATA-AGATACCATTTAATTCATTAGGTAGTATCTGTATTGTAT-T---AA--TAGCTGG-GTGTT-GTA-TTGAAGTA-AAACAAATACTTTTTACGGATGTTTCAAACCAAAGATGGAGGGTT---TGTTCAAA-TCTTTCTTTTT-TTTAAATGA-TCCGAAAATTAGAGAAAAT---TGGC-TT-G-AAAATATTTATTTG-TG-TTTT-A-TCCGAAGATTTTTT--TCGTT-TTATTT
gi|10 : A-CTG-ATTGTAC-TACTGAG-TAGCTGAAGTATTTGTA-TTGAATGA-TAACAAA-ACTTT---C----ATTTCAAACCAAAGA---GAGGTT---TGTTCAAAATCTT----TTT-TTTAAATGA-TCTGAAAATTCGAGAAAATGCATGTCTTT-G-AAAATATTTATTTGCCGTTTTT-A-TCC-AAGA-TTTTT--TCG---TTATTT
gi|11 : AGTA-CTG-ATTGTACCT---AA--TAGCTGG-GTATT-GTA-TTGAAG-A-AAACAAA--CTTT---C----ATTTCAAGCCAAA------AGGTT---TGTTCAAAATCTTCTTTTTTGTTTAGATGAATCCGAAAATTAGAGAACAA---TGGCTTTTG-AAAATATTTATTTG-CG-TTTTGA-TCCGATGA--TTTT--TCG---TTATTTaatacatttaacatctgtttcctagtcttttttacctcttaatcttatctgacacagatgaagttgatatccttttggaagttct
gi|12 : AGTA-CTG-ATTGTAC-T---AA--TTGCTGG-TTATT-GTA-TTAGAGGATATACAAA-AAACTTTAC----ATTTCAGGCCAAA--------GTTACATCTTC-AA-TCTTCTTTTGT-TTTAGAT-A-TC--GAAATTAGAGTAAAT---GGGCTTT-G---AATAT--------CG---TT-AGTCCGAAGA-TTTTTCATCG-TATTAataacatttaacatctgtttctatgtctctcccccccccttttattttattctgacacgatgagttgatatccttttggaagttttt
gi|13 : aaAAAATAATG----AGT------TATT-TTCA--AGT--CTATGT-TCAAA--GGGTACGTGGCA-C-AT-----------------TC------TTGATTT-CG--GCAGTGTCAG--GC-TCCACTGA-------TATA--------CAG-TGTTACA----GAGCAAC-AAAGTCAA--A--A-GG-T--TTAACTTGAATTTGA-CAAC---A-CA------A--T--CTGCAAACAC-------------CA---GCCC---------A-TAAATTCACA-TTTCTCATCACCA-TCGCTaatacattaacattctgtttctagtctctctcccccccccctacttatcttattctgacacagatgaaggattattcctcttttggaattctccc
gi|14 : tcggcctggtttggaagaggatgcaaaggcttcagttcaaaaattaatgtgtatatgcggCTAGTATAAGCTATT-AATGTTAT-C--TGCTTAT---AAAAATGGTT--GATAT-----TATTTTGTGACAAATCCAG-T-A---ATTTGGTA--CTTCGGGCATGT-TCGAATT-AACGTAA---CAT-T-------TTT------GGAC-T---GC----------TTT
gi|15 : tgtggggcgtaattaatatgtccgcggcattgcagtgcgttttcgggggtgggtccagtggtatcgccatgtgaaTGAT-ATTTGA--TATT-G-CCTA-A-TTTGATACAA-ATTAAGTGGTGGAAT-------GAGG-AGGGGAGG-G-----------C-GTTTA--GGGGT--TGACC-------CCCTTA--GTT-AAAATA------TTTGGTAAA---------CGAAATT--TCTGAA----TGT-GACATGC--CC-----------TTCCTACACA-TTCC-C--GGA-T-CG---CGT-CT-GCCT-CGTTT------GTT-GGGCTTT-CGTGTATGTG
gi|16 : cctttatagcCTAGTATA--CTATTTAAGATTTATC--TGCT-AT---AAAAT--GTT---ATA------TATTT-GTGACAAATTCCA-T-GTATATTTGTAA--CTTCGGGCATG--TCGAATTAAACGTAG-ACCATGT------ATTT------Gct
gi|17 : atgtgggacgttaataaaatatgtctgcggcatgtgcagtctgcgttcgggggggtcgatggtaatcgccatgtaT-------------C--TTT-CT-TATGGCTATTCGGTCCAATATCAT--ACGTTCACTGA-------TATA-----CA---GT-GTTATACA--GAG-AAG-GAAGTAAA--A--AATG-TA-A-AAC----ATT--A-CAC----G-AA------A--T--CCACAA--AA-------------CACATCTCATAGTTATGAA-TCA--TTACCATTTTTTATCACCA--CGTTT---CAGTCCCATATGTATGTGGGGGCC-ATtt
gi|18 : tTTTGTGTGGTTTCGCGCATGCT--TAGA-AA----TAATAA--T---GAA-CAGAACCNNNN-NNNNNNNN-NNNN-NNNNNNNNNNNNNNNNNNNNNNNNNNN--NNNNNNNNNNNNN---NN-NNN--NNNNATG-TG-CTCT--AT--GG-AAT-TT--------CACAGTA-------TATTGCATGCACCAA-A-TATCTAT-cgtaaaaaaa
gi|19 : AAAGTAATTCATGAGTA-GCATTATT-TCAA---GT--CTATGT-TCAAG--GGG---GTG-AA-C-CTT------------C--TTT-CTATCTTGATTT-CG--CCAA----------------TTA-------TATC-----C--CA-TTGTTACA----GAGCAACGGAAGTCAA--A--A-ta
gi|2 : acaaaggtttcagttcaaaaatgtataatgcggTTT------GG-CCT---GC----------TTTGAAAGAGGGTGCA--C---AA---TGTAAA-TGGGGAGGGGG----GGGGGTAGGT----TAATC----GGTA-ACAACATT-TCAA--AGT--CTACGT-TCATT--GGG---GTG-CA-C-CTTCTTTCTGTGTTTC--TTT-CTGTGTTCATTT-CG--CCAAT-TCAG---C-TCCACTG----------TA-----TATCAGTGGTTACA-G---AGCAA--GAAGTCAA--AGAA-TG-TA-A-AATTTAAATT--G-CATT---TCAAT-----AAAT--CCGC-------------------CA-ACATCG---------AATCA--TAA-A-TTTTTCATCTCCA-T-GCTTTGACA-T-CCATATTTATT-GGGGAAC-ATA-TAAATAG------C-A----------G-CCTTTGC--TTCGAAGAGAAGA---ATTAAT-------TT--------------CT-C-CTGTTATAA--GTTTGAT-ATTTG---T-TT-A-T--ATA-CTT-A--CAATA-CAAGTGGGGGA-TCCAGA--G--G-AGGGGGGG-GG------GGG---GTCTA--GGGGTC-CGACCCACCCCACCTTTC--ATT-AAAAAAAATAAATTTGCTAAA---------TACA--TAGTCAAAA----TGTAGACA--C--CC-----------TTTC---ACATTT-C-C--GGATTTCGT--C-C-CT-GC----ATTT------GTT-G-----T-CGTCTGTGTGACTTCGCGCTAGCTTATAGA-AAAAT-TAAAAA--TGC-GAACC-TA--NNNNN-NNNNNNNN-NNNN-NNNNNNNNNNNNNNNNNNNNNNNNNNN--NNNNNNNNNNNNN---NN-NNN--NNNNNNT-TG---CTAAAT--TGAAAT-TT-TCA-----ATAGTA-------CATTGCATGC-CCAA-C-CATCTATAAATT-A-at
gi|20 : GGGGA-ACGTAA--TAATA----AGTC-GCAGCATG-TCA----GT--CTGCGT-TTTCG--GGG---GTG-Cgtacnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnttaaag
gi|22 : gtGGGGGGGG-------------GGTATAGTAATA----AGTA-ACAATATTATCAT--AGTG-CAACGT-TTGCA--CAG---GTG-CATC-CT-------------C--TTCTCTGTGTTggtgcttgtgagtggtaatctccatgtatcactattaaattacctgc
gi|23 : AGTA-ATG-AATGTAC-T---GA--TAGCTGG-GTACT-GTA-TTGAA-GA-AAATAAA-A--TGTTAC----ATTTCAAGCCAAA
gi|24 : atcaaAGTA-TTT-AATGTAC-T---GA--TAGCCGG-GTACT-GAA-CTGAA-GA-AAACAAA-AC--TTTAC----ATTTCAAGCCA
gi|25 : tcaaAGTA-CTG-AATGTAC-T---GA--TAGCCGG-GTACT-GTA-TCGTAGCA-AATCAAtaa
gi|26 : taatcaAGTA-CTT-AATGAAC-T---GA--TAGCCGG-GCACT-GTA-gcc
gi|3 : aatcaaCTACTATA----ATTGAATAT-AT-C--TGCT-AT---GAA-TTGGTT--AATAT------ATTT-GTGACAAATCGAA-T-G---ATTTGTAA--AT-CAATTATAT--CGATTT-AAC--AC-ACCAT-T------AGTC------GGAC-T---GA----------TTTGAA-GAGGGTGCA--CA--AA---TGTATA-TTAGGGAA---A--CG--------TAA-GTAATC----GGTA-GC-----T-TC-------------GT-TCAAC--GTG---AAG-GA-CGTT-------------C--TTT-CTATGTTGATTT-CG--CCGATATCAG--GC-TACACTGA-------TGTA-------TCAGT-GTTAGA-G--AA-TAAC-GAAGTCAC--A--A-TG-TATATAATTTAAATT--A-CATT---G-GATGA---A--T--CCGCAA--A--------------CA-AT-TGA---------A-TCA--CACCA-TTTTTCATTCCCA-CCGCTT---CAGT-CCATATTTTTGTGGAGAACAAAA-TAA--AG--AGATCTA----------G-C---TGCA-TTTGAGGAGG-GATTTATTTATGCTATTATT--------------TTTC-CTGTCATAAAAGCTTGAT-AATTGATAT-TT-G-C-TGCATTTT-GTACAAT-TC-AGTGGCGGA-TCCAGA--G-----GGGAGGN-NN------NNNNN-NNNNNNNNNNNNNNNNNNNN----NNNNNNNN--NNN-NNNNNN------NNNNNNNNN---------NNNN--N--NNNNNN----NNNNNNNN--N--NN-----------NNNC-ATACA-TC-C-C--TGATTCCG---C-CTCT-GC---A-------------------------CTTTGTGGCTTCGTGCATGCTTA---G-AAATTATAAAAA--AGCGGAA-CATAACTTC-G-CAA--TTC-GGAT-CAA--GGT---TTTTTTATCCATTCAT--AA--GGCCAAGCT---AA-TCA--AAATAAA--G-T-TT--AT--Tc
gi|4 : atgtgggggactaatagatatgtcgacgcattacagcatgcgttcagggtgtgttggtttgaggtggataatctccaatccccttgtGTATA--CTGTT--AAATTAT-C--TGGT-AT---AAAA--AGTTA-GATATACATGTATTT-GTGGAAAA-CCGAGT-G---ATTTGCAA--AT-CGGGCATGT--CGAA-----CGTAACATTAT-TTGTCGGGTTTTAAAGAGG-G-T---GCACGCCATATGTTTTAA-AAGGTTTCAGTTC--AAACATGT-TA-T----------A--TGGGGA-AAATAAAATAATA----AGCA-GCTACATT-TCAAGTAGTAACTACAT-TATAC--GGA---GTG-CA-C-CT-------------T--CTCTCTATATCAATTTTT---CCAATATCAG--GC-TCCACTTACATAATGTATA-----TATTCG-TGTTACA----GAGAAAT-TAAGTCAA--A--C-TG-TA-A-AATTTAAAAT--ATCATT---G-CATACGCAA--T--CCGTAA--ACACTTGAATCATGACA-ATAT-------------TCA--TTACT-TTTTTCATCACCA-CCGCTT---CAGC-C-----TTAT------AA--ATACCGA-TA---AGGT---------------C---TGTGTTTCGGGGAGG-GA---ATTTAT-------CTATGCTTATATGGCATTTCTCTGTTATAAAAGTTTG-----TTG---T-TTCGTT-TATA-CCT-ATACAAT-TC--GTGACGGA------G--GGGG-AGAGGGGG-GGTATTCAAGGTA-TTC--AAGGTGTCGGG--------CACC--------T-AAAAAA------TTC-CT------------------T--T---------TGTAGACT--C--CCTTAATTCCCCTTTTC-AAAAA-TT-CTT--GAA-TCCGCACC-C-TT-GTGAAAATCCAAGCAGGAT-G-----T-CGTTTGTTTGGCTTTGCGCATAC-TGTAGA-AActgcatccctgtgtaacactttatacaca
gi|5 : atgttgcagctgcgttcgagggatttatctccatgcatC-A----------GTC---TGCG-TTCTAGGATG-AA---ATTTAT-------AT--------------ATCT-TTGTTATAAAAGTTTGA--ACTTC---G-AT-A-T-TTT---TT-TTACAATTT--AGTTGCGGG-CC-----------AGGGGGTG-AA------AAG-G-ATCTA----GGTCG-GACCC------CCTTTC--GCTAAAATAAT-----TTTGTTAAA---------TAAA--T--GTAAAAAAAGT-TAGACA--C--CCCCCCCCG----TTTC-AAA-A-TT-C-CT-GGA-TCCG---C-C-CT-GC---AATTG------CGC-G-----T-CG--TGTG-GGCTTCGCGCATGCTTA---A-AAAATAT-AAAA--TGCGGAACC-TA---NNNN-NNNNNNNN-NNNN-NNNNNNNNNNNNNNNNNNNNNNNNNNN--NNNNNNNNNNNNN---NN-NNN--NNNT--T-TG-C-TT---T--TG-ATA-TT-TC------ATAGTA---CATGCATGGCAC-CACCAATC-CATAT-T-ACTTAA-TATTGGGTGCCATAAGCAGGC---------TGCAAAT--CGGATAGAAAATTTCA-TTCGT---TTTAAtaatattgaag
gi|6 : gtaataaatattatcttta------TTTGCTGAAACATTATGTTAAA--T--TTAAAA----TGTAGACA--C--TC-----------TT-C-AAACA-GT-C-CT-GGA-TCTGT--C-C-CT-GC---AATTT------GTTTG-----TGCGTCTGTGTGACTCGACGCATGCTTATAGACAAATTGAAAAAAGATGCGGAACCATAACTTTTGTCAGAG--CAGGAT-CAAGG---ATATTTTGGATGAATTAATTAAACTAG---AGCT---AA-TAA--AAATAAA-TATC-CT--ATA-TG-AAA-TT-C------TATAGTAGCACTTGCAT------CACCAA-C--ATCTA--AATT-A-TATT--ATGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATAGATTCTGTCTGGT------GGTGTAAAAAAACATAAGGAA--TAC-AAATCAAT--AATGCTTTT----ACAATACA
gi|7 : cA------TTTG-TAAA---------T-----T--TCAAAA----TGTAGACA--CTTCT-----------TTCC-AAACA-TT-C-CCTGGA-TCTG---TTC-CTAGC---ATTTTT-----GTT-G-----T-CGTCTGT-TGA--TCGCGCTCG--TATAGA-AA-TTGAAAAAA--TGCGGAACCNNNNNNNNNN-NNNNNNNN-NNNN-NNNNNNNNNNNNNNNNNNNNNNNNNNN--NNNNNNNNNNNNN---NNNTTG--ATATA----------------TG-AATCTT-TCA----TA--GTAA---TTG---TGCATGCACCAG-C-CATCTAT--ATT-ATTATT--ATGTAACATTCTGACTATTATCTATGGAAATGCCGAATAGAAATTTTCAGCTCGTTAATTTAATAGTAT----------GAT------TGATCT-GTTGGTGTAAACAAAC-TAAGGAGATTACAAAATCAATC-AATGCCTT-CTTGACAAAACAGATAaga
gi|8 : tttgctgactacGTATG--CTATTCAAT-TTATCT--TGTT-TTTCCAAAAT--GTTTGGATAT------ATCT-G--ACAAA--CGA-TTG---ATTTGTAA----TCTGGCA-AT-----ACC-GACGTAG---CAT-T------ATTT------GG-C-CTTGGC----------TTTGAA-AAGGACGCA--C---GA---TGTATA-TGGGGGAA-------------AGGTACCGTAAGC----AGTAAGTAACA----------------ATGT-TCAAACGGGG---GTG-CA-C-CT-------------TCTTTCTCTATGTTGAATTTCG--C-AATATCAG--GC-TCCAgaa
gi|9 : taagcattgtacctgcgttgggggggggggggggggggtattttcatAGTA-CT--ATTGTAC-T---AAAGTAGCTGG-GTAAT-GTAATTGAAG----AATCAA-ACTTT--AC----ATTTCAAGCCGAA-----AAGGTT---TGTTTCAA-TCTTCTTTTTG-TTTAGATGA-TCCGAAATTAAGAGTAAA----TGGCTTT-GAAAAATATTTATTTG-CG--TTG-A-TC--GAGA-TTTTT--TCG---TTATTTaacaaagtaaaatggggaacataacattgcagcctgcgttcaaaggaaattagctacaatgtatactgtaatttttt
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|21 ): ATGTGGGGGACGTAAATAAAATAAGTCGCGGCATTGCAGTCTCCCTGCGTTCGGGGGTGGGTGAGTGGGTAATCTCCATGTATACTATTAAATTTATCCT
Alignments
lowQualScore : 111 1 2222 111 111 111 222222 111111111 11111 22 22 3333333333333333333333333333333333333333 333333 111 55555555555555555 111111 222222222 111 3333333333333333 1 11111 222222222 3333333333333 22222 111 1111 777777777777777777777777777777777777777777777777777777777777777 111 333 1 22 55555555555555555555555 111 66666666666666666666666 22222222222222222 2222 44444444444 4444444444444 1 2222222222222 111 111111 22222222 11111 44444444444 11 1 22222 222222222222222222222222 1111111 11111111 11111111111 11111111111 55555555555555555555555555555555555555555555555 11 1111 1 333333333333333333333333333 111 5555555555 11 33333 11 1 22 11 11 11 11111111111111 444444 111 1 2222 11 11 333
lowQualScore : 2 000 3 22 2222 6 111 555 666 444444 6 7 666666666 88888 22 1 777 00 6 7777777777777777777777777777777777777777 8 000000 444 0 8 2 44444444444444444 6 333333 4 22 4 111111111 4 777 333 4 5 5 4444444444444444 3 5 77777 5 888 5 000000000 6666666666666 66666 3 88 77 8888 6 777 3 3 3333 777777777777777777777777777777777777777777777777777777777777777 99 1 888 1 111 000 6 00 6 8 88888888888888888888888 5 99 1 6 3 111 33333333333333333333333 8 777 99 1 44444444444444444 6 3333 1 22222222222 6 6 0000000000000 0 7 6 2222222222222 3 111 0 5 999999 5 4 33333333 1 22222 66 66 00000000000 2 5 0 5 5 5 66 0 00000 5 5 999999999999999999999999 5 0 3 5 66 555 77 0 4 6 6 3 5 0000000 5 22222222 0 11 11 00000000000 00000000000 22222222222222222222222222222222222222222222222 1 3 33 3 2222 6 5 88 0 333333333333333333333333333 1 99 1 8 222 5555555555 11 66666 7 88 3 00 88 6 4 55 1 4 777 00 0 4 4 4 44 5 33333333333333 333333 444 8 0 0 0 8 8 3 1 0000 88 88 0 8 88 8 8 5 88 11 666
lowQualScore : . ... . .. .... . ... ... ... ...... . . ......... ..... .. . ... .. . ........................................ . ...... ... . . . ................. . ...... . .. . ......... . ... ... . . . ................ . . ..... . ... . ......... ............. ..... . .. .. .... . ... . . .... ............................................................... .. . ... . ... ... . .. . . ....................... . .. . . . ... ....................... . ... .. . ................. . .... . ........... . . ............. . . . ............. . ... . . ...... . . ........ . ..... .. .. ........... . . . . . . .. . ..... . . ........................ . . . . .. ... .. . . . . . . ....... . ........ . .. .. ........... ........... ............................................... . . .. . .... . . .. . ........................... . .. . . ... .......... .. ..... . .. . .. .. . . .. . . ... .. . . . . .. . .............. ...... ... . . . . . . . . .... .. .. . . .. . . . .. .. ...
lowQualScore : 5 222 8 77 5555 7 777 888 888 000000 7 3 777777777 77777 22 7 333 77 7 9999999999999999999999999999999999999999 0 222222 000 8 0 5 99999999999999999 2 000000 4 99 4 111111111 4 111 999 4 0 0 1111111111111111 3 4 55555 1 222 0 777777777 9999999999999 77777 0 77 99 0000 7 555 2 2 7777 555555555555555555555555555555555555555555555555555555555555555 22 0 777 0 333 888 0 22 7 0 66666666666666666666666 2 22 0 7 7 777 22222222222222222222222 0 000 88 8 88888888888888888 7 2222 0 77777777777 7 7 5555555555555 8 2 7 2222222222222 3 111 1 7 444444 0 8 99999999 6 00000 99 99 00000000000 1 0 2 0 0 0 99 0 88888 0 0 111111111111111111111111 0 1 2 0 99 444 99 7 3 4 4 7 7 4444444 7 77777777 1 11 44 33333333333 77777777777 00000000000000000000000000000000000000000000000 0 2 00 2 7777 7 6 88 0 888888888888888888888888888 0 88 0 0 222 0000000000 00 00000 3 33 3 00 77 7 4 66 0 4 888 66 7 4 4 4 44 0 99999999999999 000000 000 0 6 8 8 0 0 2 4 0000 88 88 8 0 66 0 0 0 88 00 444
consensus : CTAGTATA--CTATTTAANATTATTC--TGCT-AT---AAAATTGGTT--GATAT-----TATTT-GTGACAAATCCGA-T-G---ATTTGTAA--ATTCGGGCATGT-TCGAATT-AACGTAAACCAT-TA----------TTT-----GG-C-T---GC----------TTTGAA-GAGGGTGCA--CC--AA---TGTATA-TGGGG--GGGGA--CGGGGGAGGTAAAGTAATC----GGTA-GCAACATT-TCAA--AGT--CTACGT-TCAAN--GGG---GTG-CA-C-CT-------------C--TTC-CTGTGTTGATTTTCG--CCAATATCAG--GC-TCCACTGA-------TATA-----TATCAGTTGTTACA-G--GAGCAAC-GAAGTCAA--A--A-TG-TA-ATAATTTAAATT--A-CATT---G-AAT--A-----T--CCGCAA--AC-------------CA-ATNTCG---------A-TCA--TNACN-TTTTTCATCNCCA-CCGCTTTGACAGT-CCATATTTATNCGGGGAAC-ATAT-AA-TAG--AGGTC-A----------GCCT--GCGTT-CGAGGAGGGA---ATTTAT-------TT--------------TTTC-CTGTTATAAAAGTTTGAT-ATTTG---T-TT-G-T-TATA-CTT-ATACAATATCAAGTGGCGGA-TCCAGA--GGGG-AGGGGGGG-GG------GGGTG-GTCTAAGGGG-TCG-GACCC----CACCTTTC--GTTAAAA-AA------TT-TGCTAAATAAA--T--TCAAAA----TGTAGACA--C--CC-----------TTTC-AAACA-TT-C-C--GGA-TCCG---C-C-CT-GC---AATTT------GTT-G-----T-CGTCTGTGTGGCTTCGCGCATGCTTATAGA-AAATTGTAAAAA--TGCGGAACCATAACTTCTG-CANAGTTC-GGAT-CAAGGGGTATGTTTTTGATNAATTNAT--AACTAGCCAAGCT---AA-TNA--AAAT-AANTG-C-CT--AT--TG-AAT-TT-TCA----TATAGTAG-C--TTGCATTGCACGCACCAA-C-CATCTAT-AATT-AT-ATT--ATGCNACAAGCCGGCTATTATCTATGNAAATGCCGGATAGAAANTTTCAGCTCGTTAATTTAATAGTATNNNNNNNATAGATTCTGTCTGGTCT-G-TGGTGTAAACAAACATAAGGAA--TAC-AAATCAATC-AATGCCTTCCTTGACAATACAGATACCATTTAATTCATTAGGTAGTA-CTG-ANTGTAC-T---GA--TAGCCGG-GTACT-GTA-TTGAAGGA-AAACAAA-ACTTTTTAC----ATTTCAAGCCAAAGA---AAGGTT---TGTT-CAAAATCTTCTTTTTT-TTTAGATG-ATCCGAAAATTAGAGAAAAT---TGGC-TTTG-AAAATATTTATTTG-CG-TTTT-A-TCCGAAGA-TTTTT--TCG-T-TTATTT
Reference ( family-271 ) : CTAGTATA--CTATTTAANATTATTC--TGCT-AT---AAAATTGGTT--GATAT-----TATTT-GTGACAAATCCGA-T-G---ATTTGTAA--ATTCGGGCATGT-TCGAATT-AACGTAAACCAT-TA----------TTT-----GG-C-T---GC----------TTTGAA-GAGGGTGCA--CC--AA---TGTATA-TGGGG--GGGGA--CGGGGGAGGTAAAGTAATC----GGTA-GCAACATT-TCAA--AGT--CTACGT-TCAAN--GGG---GTG-CA-C-CT-------------C--TTC-CTGTGTTGATTTTCG--CCAATATCAG--GC-TCCACTGA-------TATA-----CATCAGTTGTTACA-G--GAGCAAC-GAAGTCAA--A--A-TG-TA-ATAATTTAAATT--A-CATT---G-AAT--A-----T--CCGCAA--AC-------------CA-ATNTCG---------A-TCA--TNACN-TTTTTCATCNCCA-CCGCTTTGACAGT-CCATATTTATNCGGGGAAC-ATAT-AA-TAG--AGGTC-A----------GCCT--GCGTT-CGAGGAGGGA---ATTTAT-------TT--------------TTTC-CTGTTATAAAAGTTTGAT-ATTTG---T-TT-G-T-TATA-CTT-ATACAATATCAAGTGGCGGA-TCCAGA--GAGG-AGGGGGGG-GG------GGGTG-GTCTAAGGGG-TCGCGACCC----CACCTTTC--GTTAAAA-AA------TT-TGCTAAATAAA--T--TCAAAA----TGTAGACA--C--CC-----------TTTC-AAACA-TT-C-C--GGA-TCCG---C-C-CT-GC---AATTT------GTT-G-----T-CGTCTGTGTGGCTTCGCGCATGCTTATAGA-AAATTGTAAAAA--TGCGGAACCATAACTTCTG-CANAGTTC-GGAT-CAAGGGGTATGTTTTTGATNAATTNAT--AACTAGCCAAGCT---AA-TNA--AAAT-AANTG-C-CT--AT--TG-AAT-TT-TCA----TATAGTAG-C--TTGCATTGCACGCACCAA-C-CATCTAT-AATT-AT-ATT--ATGCNACAAGCCGGCTATTATCTATGNAAATGCCGGATAGAAANTTTCAGCTCGTTAATTTAATAGTATNNNNNNNATAGATTCTGTCTGGTCT-G-TGGTGTAAACAAACATAAGGAA--TAC-AAATCAATC-AATGCCTTCCTTGACAATACAGATACCATTTAATTCATTAGGTAGTA-CTG-ANTGTAC-T---GA--TAGCCGG-GTACT-GTA-TTGAAGGA-AAACAAA-ACTTTTTAC----ATTTCAAGCCAAAGA---AAGGTT---TGTT-CAAAATCTTCTTTTTT-TTTAGATG-ATCCGAAAATTAGAGAAAAT---TGGC-TTTG-AAAATATTTATTTG-CG-TTTT-A-TCCGAAGA-TTTTT--TCG-T-TTATTT
gi|1 : CTA-TATC--TTATTTAAAATTATTTCTTGCT-AT---ATAATTGGTT--GATAT-----TATTT-GTGACAAATCC---T-A---ATTTGTAATTATTCAGGCATGTCTCGAATT-A-CGTAAATAAT-T-----------TTT-----GG-C-T---GC----------TTTGAA-GAGGGTGCA--CCGCAA---TGTATACTGGGGTGGGGGAGCCGGGGGAAGTCAAGTATCC----GGTA-ACAACATT-CCGA--AGT--CTACGTGTCAAT--AGGTT-GTG-CA-C-CT-------------C--TTC-CTGTGTTCATTTTCGGTCCAATATCAGTTGC-TCCACTTA-------TACATGGAACATTAGTTGTTACA-GTTGAGCAAC-GAAGTCAATTA--A-TGCTA-ATAATGTA--TT--T-TTTTTAAG-AAT--A-----TTCCCGCAG--AC-------------TA-ATTTCG---------A-TCA--TCATT-TATTTCATCTCCAGCTGCTTTGACAGTGCCATATTCATCCGGGGAAC-ATAT-AA-TAACTAGGTC-ACGTCATTCAAGCCT--GTGCT-CGAAGAGAGA---ATTAAT-------TT--------------TCTC-CTGTTATA----TTGGATTATTTG---T-TT-A-T-TATA-CTC-ATAAAGTATCACGTGGGGGAATCCAGAAAGAGGTAGGGGGGGCGG------GGGTGTGTCTAAGGGGGTCGTGACTC----CACCTTTTCAGTTAAAT-AA------TT-TGCTAAATAAA--T--TCAAA-----TGTAGACA--C--TC-----------TTTC-AAACA-TT-C-T--GGA-TCTG---C-C-CT-GC---AATTT------GTT-G-----T-CGTCTGTGTGACTTCGCGCATGCTTATAGG-ATATTGTTAAAA--TGCGGAACTATTACTTCTG-CATAGTTC-GGATCCAAGGGGTATGTTTTTGATTAATTTTT--AATTAACTAAGCTTGGAA-TTATGAAATAAATTG-T-CT--ATGCTG-AAT-TTATCAGAGTTACATTAGCC--TTGCATTGCAC---CCAA-CGGATCTAT-AATT--T-AT-----------AGTCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGATTTTGTCTGGTTTGG-TGTTGTTAACAAACATAAGGAA--TAC-CAATCAATCAAATGTCTTCCTTGACAATA-AGATACCATTTAATTCATTAGGTAGTATCTGTATTGTAT-T---AA--TAGCTGG-GTGTT-GTA-TTGAAGTA-AAACAAATACTTTTTACGGATGTTTCAAACCAAAGATGGAGGGTT---TGTT-C-AAATCTTTCTTTTT-TTTAAATG-ATCCGAAAATTAGAGAAAAT---TGGC--TTG-AAAATATTTATTTG-TG-TTTT-A-TCCGAAGATTTTTT--TCGTT-TTATTT
gi|10 : A-CTG-ATTGTAC-TACTGAG-TAGCTGAAGTATTTGTA-TTGAATGA-TAACAAA-ACTTT---C----ATTTCAAACCAAAGA---GAGGTT---TGTT-CAAAATC----TTTTT-TTTAAATG-ATCTGAAAATTCGAGAAAATGCATGTC-TTTG-AAAATATTTATTTGCCGTTTTT-A-TCC-AAGA-TTTTT--TCG---TTATTT
gi|11 : AGTA-CTG-ATTGTACCT---AA--TAGCTGG-GTATT-GTA-TTGAAG-A-AAACAAA--CTTT---C----ATTTCAAGCCAAA------AGGTT---TGTT-CAAAATCTTCTTTTTTGTTTAGATGAATCCGAAAATTAGAGAACAA---TGGCTTTTG-AAAATATTTATTTG-CG-TTTTGA-TCCGATGA--TTTT--TCG---TTATTTaatacatttaacatctgtttcctagtcttttttacctcttaatcttatctgacacagatgaagttgatatccttttggaagttct
gi|12 : AGTA-CTG-ATTGTAC-T---AA--TTGCTGG-TTATT-GTA-TTAGAGGATATACAAA-AAACTTTAC----ATTTCAGGCCAAA--------GTTACATCTT-C--AATCTTCTTTTGT-TTTAGAT--ATC--GAAATTAGAGTAAAT---GGGC-TTTG---AATAT--------CG---TT-AGTCCGAAGA-TTTTTCATCG-TATTAataacatttaacatctgtttctatgtctctcccccccccttttattttattctgacacgatgagttgatatccttttggaagttttt
gi|13 : aaAAAATAATG----AGT------TATT-TTCA--AGT--CTATGT-TCAAA--GGGTACGTGGCA-C-AT-----------------TC------TTGATTT-CG--GCAGTGTCAG--GC-TCCACTGA-------TATA--------CAG-TGTTACA----GAGCAAC-AAAGTCAA--A--A-GG-T--TTAACTTGAATTTGA-CAAC---A-CA---A-----T--CTGCAAACAC-------------CA---GCCC---------A-TAAATTCACA-TTTCTCATCACCA-TCGCTaatacattaacattctgtttctagtctctctcccccccccctacttatcttattctgacacagatgaaggattattcctcttttggaattctccc
gi|14 : tcggcctggtttggaagaggatgcaaaggcttcagttcaaaaattaatgtgtatatgcggCTAGTATAAGCTATT-AATGTTAT-C--TGCTTAT---AAAAATGGTT--GATAT-----TATTTTGTGACAAATCCAG-T-A---ATTTGGTA--CTTCGGGCATGT-TCGAATT-AACGTAA--CAT-T-----------TTT-----GGAC-T---GC----------TTT
gi|15 : tgtggggcgtaattaatatgtccgcggcattgcagtgcgttttcgggggtgggtccagtggtatcgccatgtgaaTGAT-ATTTGA--TATT-G-CCTA-A-TTTGATACAA-ATTAAGTGGTGGAAT-------GAGG-AGGGGAGG-GC------G------TTTA-GGGG-TTG--ACCC----C---CTTA--GTTAAAA-TA------TT-TGGTAAACGAAATT--TCTGAA----TGT-GACATGC--CC-----------TTCCTACACA-TTCC-C--GGA-T-CG---CGT-CT-GCCT-CGTTT------GTT-GGGCTTT-CGTGTATGTG
gi|16 : cctttatagcCTAGTATA--CTATTTAAGATTTATC--TGCT-AT---AAAAT--GTT---ATA------TATTT-GTGACAAATTCCA-T-GTATATTTGTAA--CTTCGGGCATG--TCGAATTAAACGTAGACCATGTA----------TTT-----Gct
gi|17 : atgtgggacgttaataaaatatgtctgcggcatgtgcagtctgcgttcgggggggtcgatggtaatcgccatgtaT-------------C--TTT-CT-TATGGCTATTCGGTCCAATATCAT--ACGTTCACTGA-------TATA-----CA---GT-GTTATACA--GAG-AAG-GAAGTAAA--A--AATG-TA-A-AAC----ATT--A-CAC----G-AA---A-----T--CCACAA--AA-------------CACATCTCATAGTTATGAA-TCA--TTACCATTTTTTATCACCA--CGTTT---CAGTCCCATATGTATGTGGGGGCC-ATtt
gi|18 : tTTTGTGTGGTTTCGCGCATGCT--TAGA-AA----TAATAA--T---GAA-CAGAACCNNNN-NNNNNNNN-NNNN-NNNNNNNNNNNNNNNNNNNNNNNNNNN--NNNNNNNNNNNNN---NN-NNN--NNNN-ATGTG-CTCT--AT--GG-AAT-TT--------CACAGTA--------TATTGCATGCACCAA-A-TATCTAT-cgtaaaaaaa
gi|19 : AAAGTAATTCATGAGTA-GCATTATT-TCAA---GT--CTATGT-TCAAG--GGG---GTG-AA-C-CTT------------C--TTT-CTATCTTGATTT-CG--CCAAT-------------------------TATA-----TCCCA-TTGTTACA----GAGCAACGGAAGTCAA--A--A-ta
gi|2 : acaaaggtttcagttcaaaaatgtataatgcgg----------TTT-----GG-CCT---GC----------TTTGAAAGAGGGTGCA--C---AA---TGTAAA-TGGGG--AGGG-----GGGGGGGTAGGTTAATC----GGTA-ACAACATT-TCAA--AGT--CTACGT-TCATT--GGG---GTG-CA-C-CTTCTTTCTGTGTTTC--TTT-CTGTGTTCATTT-CG--CCAAT-TCAG---C-TCCACTG----------TA-----TATCAGTGGTTACA-G---AGCAA--GAAGTCAA--AGAA-TG-TA-A-AATTTAAATT--G-CATT---TCAAT--AAA---T--CCGC-------------------CA-ACATCG---------AATCA--TAA-A-TTTTTCATCTCCA-T-GCTTTGACA-T-CCATATTTATT-GGGGAAC-ATAT-AAATAG------C-A----------GCCTTTGC-TT-CGAAGAGAAG---AATTAA-------TT--------------TCTC-CTGTTATAA--GTTTGAT-ATTTG---T-TT-A-T--ATA-CTT-A--CAATA-CAAGTGGGGGA-TCCAGA--G--G-AGGGGGGG-GG------GGG---GTCTA-GGGG-TC-CGACCCACCCCACCTTTC--ATTAAAA-AAAATAAATT-TGCTAAATACA--TAGTCAAAA----TGTAGACA--C--CC-----------TTTC---ACATTT-C-C--GGATTTCGT--C-C-CT-GC----ATTT------GTT-G-----T-CGTCTGTGTGACTTCGCGCTAGCTTATAGA-AAAAT-TAAAAA--TGC-GAACC-TA--NNNNN-NNNNNNNN-NNNN-NNNNNNNNNNNNNNNNNNNNNNNNNNN--NNNNNNNNNNNNN---NN-NNN--NNNN-NNTTG---CTAAAT--TGAAAT-TT-TCA-----ATAGTA--------CATTGCATGC-CCAA-C-CATCTATAAATT-Aat
gi|20 : GGGGAACGTAA--TAATA----AGTC-GCAGCATG-TCA----GT--CTGCGT-TTTCG--GGG---GTG-Cgtacnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnttaaag
gi|22 : gtGGGG--GGGG----------GGTATAGTAATA----AGTA-ACAATATTATCAT--AGTG-CAACGT-TTGCA--CAG---GTG-CATC-CT-------------C--TTCTCTGTGTTggtgcttgtgagtggtaatctccatgtatcactattaaattacctgc
gi|23 : AGTA-ATG-AATGTAC-T---GA--TAGCTGG-GTACT-GTA-TTGAA-GA-AAATAAA-A--TGTTAC----ATTTCAAGCCAAA
gi|24 : atcaaAGTA-TTT-AATGTAC-T---GA--TAGCCGG-GTACT-GAA-CTGAA-GA-AAACAAA-AC--TTTAC----ATTTCAAGCCA
gi|25 : tcaaAGTA-CTG-AATGTAC-T---GA--TAGCCGG-GTACT-GTA-TCGTAGCA-AATCAAtaa
gi|26 : taatcaAGTA-CTT-AATGAAC-T---GA--TAGCCGG-GCACT-GTA-gcc
gi|3 : aatcaaCTACTATA----ATTGAATAT-AT-C--TGCT-AT---GAA-TTGGTT--AATAT------ATTT-GTGACAAATCGAA-T-G---ATTTGTAA--AT-CAATTATAT--CGATTT-AAC--ACACCAT-TA----------GTC-----GGAC-T---GA----------TTTGAA-GAGGGTGCA--CA--AA---TGTATA-TTAGG--GAA-A--CG-------TAA-GTAATC----GGTA-GC-----T-TC-------------GT-TCAAC--GTG---AAG-GA-CGTT-------------C--TTT-CTATGTTGATTT-CG--CCGATATCAG--GC-TACACTGA-------TGTA-------TCAGT-GTTAGA-G--AA-TAAC-GAAGTCAC--A--A-TG-TATATAATTTAAATT--A-CATT---G-GATGAA-----T--CCGCAA--AC--------------A-AT-TGA---------A-TCA--CACCA-TTTTTCATTCCCA-CCGCTT---CAGT-CCATATTTTTGTGGAGAACAAAAT-AA--AG--AGATCTA----------G-CT--GCATT-TGAGGAGGGATTTATTTATGCTATTATT--------------TTTC-CTGTCATAAAAGCTTGAT-AATTGATAT-TT-G-C-TGCATTTT-GTACAAT-TC-AGTGGCGGA-TCCAGA--GGGG-A---GGNN-NN------NNNNN-NNNNNNNNNN-NNNNNNNNN----NNNNNNNN--NNNNNNN-NN------NN-NNNNNNNNNNN--N--NNNNNN----NNNNNNNN--N--NN-----------NNNC-ATACA-TC-C-C--TGATTCCG---C-CTCT-GC---A-------------------------CTTTGTGGCTTCGTGCATGCTTA---G-AAATTATAAAAA--AGCGGAA-CATAACTTC-G-CAA--TTC-GGAT-CAA--GGT---TTTTTTATCCATTCAT--AA--GGCCAAGCT---AA-TCA--AAAT-AAA-G-T-TT--AT--Tc
gi|4 : atgtgggggactaatagatatgtcgacgcattacagcatgcgttcagggtgtgttggtttgaggtggataatctccaatccccttgtGTATA--CTGTT--AAATTAT-C--TGGT-AT---AAAA--AGTTA-GATATACATGTATTT-GTGGAAAA-CCGAGT-G---ATTTGCAA--AT-CGGGCATGT--CGAA-----CGTAA--CAT-TATTTGTCGGGTTTTAAAGAGG-G-T---GCACGCCATATGTTTTAA-AAGGTTTCAGTTC--AAACATGT-TA-T----------A--TGGGGAAAATAAAATAATA----AGCA-GCTACATT-TCAAGTAGTAACTACAT-TATAC--GGA---GTG-CA-C-CT-------------T--CTCTCTATATCAATTTTT---CCAATATCAG--GC-TCCACTTACATAATGTATA-----TATTCGT-GTTACA-G---AGAAAT-TAAGTCAA--A--C-TG-TA-A-AATTTAAAAT--ATCATT---G-CAT--ACGCAAT--CCGTAA--ACACTTGAATCATGACA-ATAT-------------TCA--TTACT-TTTTTCATCACCA-CCGCTT---CAGC-C-----TTAT------AA--ATACCGA-TA---AGGTC---------------T--GTGTTTCGGGGAGGGA---ATTTAT-------CTATGCTTATATGGCATTTCTCTGTTATAAAAGTTTG-----TTG---T-TTCGTT-TATA-CCT-ATACAAT-TC--GTGACGGA------G--GGGG-AGAGGGGG-GGTATTCAAGGTA-TTC-AAGGTG-TCGGG--------CACC--------TAAAA-AA------TT-C-CT---------T--T---------TGTAGACT--C--CCTTAATTCCCCTTTTC-AAAAA-TT-CTT--GAA-TCCGCACC-C-TT-GTGAAAATCCAAGCAGGAT-G-----T-CGTTTGTTTGGCTTTGCGCATAC-TGTAGA-AActgcatccctgtgtaacactttatacaca
gi|5 : atgttgcagctgcgttcgagggatttatctccatgcatC-A----------GTCT--GCGTT-CTAGGATGAA---ATTTAT-------AT--------------ATCT-TTGTTATAAAAGTTTGA--ACTTC---G-AT-A-T-TTT---TT-TTACAATTT--AGTTGCGGG-CC-----------AGGGGGTG-AA------AAG-G-ATCTA---GG-TCG-GACCC------CCTTTC--GCTAAAATAAT-----TT-TGTTAAATAAA--T--GTAAAAAAAGT-TAGACA--C--CCCCCCCCG----TTTC-AAA-A-TT-C-CT-GGA-TCCG---C-C-CT-GC---AATTG------CGC-G-----T-CG--TGTG-GGCTTCGCGCATGCTTA---A-AAAATAT-AAAA--TGCGGAACC-TA---NNNN-NNNNNNNN-NNNN-NNNNNNNNNNNNNNNNNNNNNNNNNNN--NNNNNNNNNNNNN---NN-NNN--NNNT---TTG-C-TT---T--TG-ATA-TT-TC------ATAGTA--C--ATGCATGGCAC-CACCAATC-CATAT-T-ACTTAAT-ATTGGGTGCCATAAGCAGGC---------TGCAAAT--CGGATAGAAAATTTCA-TTCGT---TTTAAtaatattgaag
gi|6 : gtaataaatattatctttaTTT--GCTGAAA-CA------TTATGTTAAAT--------TTAAAA----TGTAGACA--C--TC-----------TT-C-AAACA-GT-C-CT-GGA-TCTGT--C-C-CT-GC---AATTT------GTTTG-----TGCGTCTGTGTGACTCGACGCATGCTTATAGACAAATTGAAAAAAGATGCGGAACCATAACTTTTGTCAGAG--CAGGAT-CAAGG---ATATTTTGGATGAATTAATTAAACTAG---AGCT---AA-TAA--AAAT-AAATATC-CT--ATA-TG-AAA-TT-C------TATAGTAG-CACTTGCAT------CACCAA-C--ATCTA--AATT-AT-ATT--ATGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATAGATTCTGTCTGGT------GGTGTAAAAAAACATAAGGAA--TAC-AAATCAAT--AATGCTTTT----ACAATACA
gi|7 : cA------TT-TG-TAAAT-----T--TCAAAA----TGTAGACA--CTTCT-----------TTCC-AAACA-TT-C-CCTGGA-TCTG---TTC-CTAGC---ATTTTT-----GTT-G-----T-CGTCTGT-TGA--TCGCGCTCG--TATAGA-AA-TTGAAAAAA--TGCGGAACCNNNNNNNNNN-NNNNNNNN-NNNN-NNNNNNNNNNNNNNNNNNNNNNNNNNN--NNNNNNNNNNNNN---NNNTTG--ATAT-A---------------TG-AATCTT-TCA----TA--GTAA----TTG---TGCATGCACCAG-C-CATCTAT-A-TT-ATTATT--ATGTAACATTCTGACTATTATCTATGGAAATGCCGAATAGAAATTTTCAGCTCGTTAATTTAATAGTAT----------GAT------TGATCT-GTTGGTGTAAACAAAC-TAAGGAGATTACAAAATCAATC-AATGCCTT-CTTGACAAAACAGATAaga
gi|8 : tttgctgactacGTATG--CTATTCAAT-TTATCT--TGTT-TTTCCAAAAT--GTTTGGATAT------ATCT-G--ACAAA--CGA-TTG---ATTTGTAA----TCTGGCA-AT-----ACC-GACGTAG--CAT-TA----------TTT-----GG-C-CTTGGC----------TTTGAA-AAGGACGCA--C---GA---TGTATA-TGGGG--GAA----------AGGTACCGTAAGC----AGTAAGTAACA----------------ATGT-TCAAACGGGG---GTG-CA-C-CT-------------TCTTTCTCTATGTTGAATTTCG--C-AATATCAG--GC-TCCAgaa
gi|8 : taagcattgtacctgcgttgggggggggggggggggggtattttcatGGGGAAC-ATAA-CA-TTG------C-A----------GCCT--GCGTT-CAA--AGGAA---ATTaacaaagtaaaatggggaacataacattgcagcctgcgttcaaaggaaattagctacaatgtatactgtaatttttt
gi|9 : taagcattgtacctgcgttgggggggggggggggggggtattttcatgtatgctattcaatttatcttgtttttccaaaatgtttggatatatctgacaaacgattgatttgtaatctggcaataccgacgtagcattatttggccttggctttgaaaaggacgcacgatgtatatgggggaaaggtaccgtaagcagtaagtaacaatgttcaaacgggggtgcaccttctttctctatgttgaatttcgcaatatcaggctccaaacaaagtaaaatAGTA-CT--ATTGTAC-T---AAAGTAGCTGG-GTAAT-GTAATTGAAG----AATCAA-ACTTT--AC----ATTTCAAGCCGAA-----AAGGTT---TGTTTCAA--TCTTCTTTTTG-TTTAGATG-ATCCGAAATTAAGAGTAAA----TGGC-TTTGAAAAATATTTATTTG-CG--TTG-A-TC--GAGA-TTTTT--TCG---TTATTTagctacaatgtatactgtaatttttt
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|21 ): ATGTGGGGGACGTAAATAAAATAAGTCGCGGCATTGCAGTCTCCCTGCGTTCGGGGGTGGGTGAGTGGGTAATCTCCATGTATACTATTAAATTTATCCT
Alignments
lowQualScore : 111 1 2222 111 111 111 222222 111111111 11111 22 22 3333333333333333333333333333333333333333 333333 111 55555555555555555 111111 222222222 111 3333333333333333 1 11111 222222222 33333333 11 22222 111 7777777777777777777777777777777777777777777777777777777777777777777777 111 333 1 22 55555555555555555555555 111 66666666666666666666666 22222222222222222 2222 222222222222222 333333333333333 1 111111 111 111111 22222222 11111 44444444444 11 1 22222 222222222222222222222222 1111111 11111111 11111111111 11111111111 55555555555555555555555555555555555555555555555 11 1111 1 333333333333333333333333333 111 5555555555 11 33333 11 1 22 11 11 11 11111111111111 444444 111 1 2222 11 11 333
lowQualScore : 2 000 3 22 2222 6 111 555 666 444444 6 7 666666666 88888 22 1 777 00 6 7777777777777777777777777777777777777777 8 000000 444 0 8 2 44444444444444444 6 333333 4 22 4 111111111 4 777 333 4 5 5 4444444444444444 3 5 77777 5 888 5 000000000 11111111 33 66666 3 88 5 77 77 6 777 3 3 7777777777777777777777777777777777777777777777777777777777777777777777 99 1 888 1 111 000 6 00 6 8 88888888888888888888888 5 99 1 6 3 111 33333333333333333333333 8 777 99 1 44444444444444444 6 3333 1 999999999999999 1 0 777777777777777 0 7 6 66 0 999999 3 111 0 5 999999 5 4 33333333 1 22222 66 66 00000000000 2 5 0 5 5 5 66 0 00000 5 5 999999999999999999999999 5 0 3 5 66 555 77 0 4 6 6 3 5 0000000 5 22222222 0 11 11 00000000000 00000000000 22222222222222222222222222222222222222222222222 1 3 33 3 2222 6 5 88 0 333333333333333333333333333 1 99 1 8 222 5555555555 11 66666 7 88 3 00 88 6 4 55 1 4 777 00 0 4 4 4 44 5 33333333333333 333333 444 8 0 0 0 8 8 3 1 0000 88 88 0 8 88 8 8 5 88 11 666
lowQualScore : . ... . .. .... . ... ... ... ...... . . ......... ..... .. . ... .. . ........................................ . ...... ... . . . ................. . ...... . .. . ......... . ... ... . . . ................ . . ..... . ... . ......... ........ .. ..... . .. . .. .. . ... . . ...................................................................... .. . ... . ... ... . .. . . ....................... . .. . . . ... ....................... . ... .. . ................. . .... . ............... . . ............... . . . .. . ...... . ... . . ...... . . ........ . ..... .. .. ........... . . . . . . .. . ..... . . ........................ . . . . .. ... .. . . . . . . ....... . ........ . .. .. ........... ........... ............................................... . . .. . .... . . .. . ........................... . .. . . ... .......... .. ..... . .. . .. .. . . .. . . ... .. . . . . .. . .............. ...... ... . . . . . . . . .... .. .. . . .. . . . .. .. ...
lowQualScore : 5 222 8 77 5555 7 777 888 888 000000 7 3 777777777 77777 22 7 333 77 7 9999999999999999999999999999999999999999 0 222222 000 8 0 5 99999999999999999 2 000000 4 99 4 111111111 4 111 999 4 0 0 1111111111111111 3 4 55555 1 222 0 777777777 00000000 44 77777 0 77 7 99 99 7 555 2 2 0000000000000000000000000000000000000000000000000000000000000000000000 22 0 777 0 333 888 0 22 7 0 66666666666666666666666 2 22 0 7 7 777 22222222222222222222222 0 000 88 8 88888888888888888 7 2222 0 000000000000000 0 2 888888888888888 8 2 7 88 2 222222 3 111 1 7 444444 0 8 99999999 6 00000 99 99 00000000000 1 0 2 0 0 0 99 0 88888 0 0 111111111111111111111111 0 1 2 0 99 444 99 7 3 4 4 7 7 4444444 7 77777777 1 11 44 33333333333 77777777777 00000000000000000000000000000000000000000000000 0 2 00 2 7777 7 6 88 0 888888888888888888888888888 0 88 0 0 222 0000000000 00 00000 3 33 3 00 77 7 4 66 0 4 888 66 7 4 4 4 44 0 99999999999999 000000 000 0 6 8 8 0 0 2 4 0000 88 88 8 0 66 0 0 0 88 00 444
consensus : CTAGTATA--CTATTTAANATTATTC--TGCT-AT---AAAATTGGTT--GATAT-----TATTT-GTGACAAATCCGA-T-G---ATTTGTAA--ATTCGGGCATGT-TCGAATT-AACGTAAACCAT-TA----------TTT-----GG-C-T---GC----------TTTGAA-GAGGGTGCA--CC--AA---TGTATA-TGGGG--GGGGA--CGGGGGAGGTAAAGTAATC----GGTA-GCAACATT-TCAA--AGT--CTACGT-TCAAN--GGG---GTG-CA-C-CT-------------C--TTC-CTGTGTTGATTTTCG--CCAATATCAG--GC-TCCACTGA-------TATAT-----ATCAGTTGTTACA-G--GAGCAAC-GAAGT-CAA--A--ATG-TA-ATAATTTAAATT--A-CATC---G-AAT--A-----T--CCGCAA--AC-------------CA-ATNTC---------GA-TCA--TNA-CATTTTTCATCNCCA-CCGCTTTGACAGT-CCATATTTATNCGGGGAAC-ATAT-AA-TAG--AGGTC-A----------GCCT--GCGTT-CGAGGAGGGA---ATTTAT-------TT--------------TTTC-CTGTTATAAAAGTTTGAT-ATTTG---T-TT-G-T-TATA-CTT-ATACAATATCAAGTGGCGGA-TCCAGA--GGG-G-AGGGGGGG-GG------GGGTG-GTCTAAGGGG-TCG-GACCC----CACCTTTC--GTTAAAA-AA------TT-TGCTAAATAAA--T--TCAAAA----TGTAGACA--C--CC-----------TTTC-AAACA-TT-C-C--GGA-TCCG---C-C-CT-GC---AATTT------GTT-G-----T-CGTCTGTGTGGCTTCGCGCATGCTTATAGA-AAATTGTAAAAA--TGCGGAACCATAACTTCTG-CANAGTTC-GGAT-CAAGGGGTATGTTTTTGATNAATTNAT--AACTAGCCAAGCT---AA-TNA--AAAT-AANTG-C-CT--AT--TG-AAT-TT-TCA----TATAGTAG-C--TTGCATTGCACGCACCAA-C-CATCTAT-AATT-AT-ATT--ATGCNACAAGCCGGCTATTATCTATGNAAATGCCGGATAGAAANTTTCAGCTCGTTAATTTAATAGTATNNNNNNNATAGATTCTGTCTGGTCT-G-TGGTGTAAACAAACATAAGGAA--TAC-AAATCAATC-AATGCCTTCCTTGACAATACAGATACCATTTAATTCATTAGGTAGTA-CTG-ANTGTAC-T---GA--TAGCCGG-GTACT-GTA-TTGAAGGA-AAACAAA-ACTTTTTAC----ATTTCAAGCCAAAGA---AAGGTT---TGTT-CAAAATCTTCTTTTTT-TTTAGATG-ATCCGAAAATTAGAGAAAAT---TGGC-TTTG-AAAATATTTATTTG-CG-TTTT-A-TCCGAAGA-TTTTT--TCG-T-TTATTT
Reference ( family-271 ) : CTAGTATA--CTATTTAANATTATTC--TGCT-AT---AAAATTGGTT--GATAT-----TATTT-GTGACAAATCCGA-T-G---ATTTGTAA--ATTCGGGCATGT-TCGAATT-AACGTAAACCAT-TA----------TTT-----GG-C-T---GC----------TTTGAA-GAGGGTGCA--CC--AA---TGTATA-TGGGG--GGGGA--CGGGGGAGGTAAAGTAATC----GGTA-GCAACATT-TCAA--AGT--CTACGT-TCAAN--GGG---GTG-CA-C-CT-------------C--TTC-CTGTGTTGATTTTCG--CCAATATCAG--GC-TCCACTGA-------TATAT-----ATCAGTTGTTACA-G--GAGCAAC-GAAGT-CAA--A--ATG-TA-ATAATTTAAATT--A-CATT---G-AAT--A-----T--CCGCAA--AC-------------CA-ATNTC---------GA-TCA--TNA-CNTTTTTCATCNCCA-CCGCTTTGACAGT-CCATATTTATNCGGGGAAC-ATAT-AA-TAG--AGGTC-A----------GCCT--GCGTT-CGAGGAGGGA---ATTTAT-------TT--------------TTTC-CTGTTATAAAAGTTTGAT-ATTTG---T-TT-G-T-TATA-CTT-ATACAATATCAAGTGGCGGA-TCCAGA--GGG-G-AGGGGGGG-GG------GGGTG-GTCTAAGGGG-TCG-GACCC----CACCTTTC--GTTAAAA-AA------TT-TGCTAAATAAA--T--TCAAAA----TGTAGACA--C--CC-----------TTTC-AAACA-TT-C-C--GGA-TCCG---C-C-CT-GC---AATTT------GTT-G-----T-CGTCTGTGTGGCTTCGCGCATGCTTATAGA-AAATTGTAAAAA--TGCGGAACCATAACTTCTG-CANAGTTC-GGAT-CAAGGGGTATGTTTTTGATNAATTNAT--AACTAGCCAAGCT---AA-TNA--AAAT-AANTG-C-CT--AT--TG-AAT-TT-TCA----TATAGTAG-C--TTGCATTGCACGCACCAA-C-CATCTAT-AATT-AT-ATT--ATGCNACAAGCCGGCTATTATCTATGNAAATGCCGGATAGAAANTTTCAGCTCGTTAATTTAATAGTATNNNNNNNATAGATTCTGTCTGGTCT-G-TGGTGTAAACAAACATAAGGAA--TAC-AAATCAATC-AATGCCTTCCTTGACAATACAGATACCATTTAATTCATTAGGTAGTA-CTG-ANTGTAC-T---GA--TAGCCGG-GTACT-GTA-TTGAAGGA-AAACAAA-ACTTTTTAC----ATTTCAAGCCAAAGA---AAGGTT---TGTT-CAAAATCTTCTTTTTT-TTTAGATG-ATCCGAAAATTAGAGAAAAT---TGGC-TTTG-AAAATATTTATTTG-CG-TTTT-A-TCCGAAGA-TTTTT--TCG-T-TTATTT
gi|1 : CTA-TATC--TTATTTAAAATTATTTCTTGCT-AT---ATAATTGGTT--GATAT-----TATTT-GTGACAAATCC---T-A---ATTTGTAATTATTCAGGCATGTCTCGAATT-A-CGTAAATAAT-T-----------TTT-----GG-C-T---GC----------TTTGAA-GAGGGTGCA--CCGCAA---TGTATACTGGGGTGGGGGAGCCGGGGGAAGTCAAGTATCC----GGTA-ACAACATT-CCGA--AGT--CTACGTGTCAAT--AGGTT-GTG-CA-C-CT-------------C--TTC-CTGTGTTCATTTTCGGTCCAATATCAGTTGC-TCCACTTA-------TACATGGAACATTAGTTGTTACA-GTTGAGCAAC-GAAGT-CAATTA--ATGCTA-ATAATGTA--TT--T-TTTTTAAG-AAT--A-----TTCCCGCAG--AC-------------TA-ATTTC---------GA-TCA--TCA-TTTATTTCATCTCCAGCTGCTTTGACAGTGCCATATTCATCCGGGGAAC-ATAT-AA-TAACTAGGTC-ACGTCATTCAAGCCT--GTGCT-CGAAGAGAGA---ATTAAT-------TT--------------TCTC-CTGTTATA----TTGGATTATTTG---T-TT-A-T-TATA-CTC-ATAAAGTATCACGTGGGGGAATCCAGAAAGAG-GTAGGGGGGGCGG------GGGTGTGTCTAAGGGGGTCGTGACTC----CACCTTTTCAGTTAAAT-AA------TT-TGCTAAATAAA--T--TCAAA-----TGTAGACA--C--TC-----------TTTC-AAACA-TT-C-T--GGA-TCTG---C-C-CT-GC---AATTT------GTT-G-----T-CGTCTGTGTGACTTCGCGCATGCTTATAGG-ATATTGTTAAAA--TGCGGAACTATTACTTCTG-CATAGTTC-GGATCCAAGGGGTATGTTTTTGATTAATTTTT--AATTAACTAAGCTTGGAA-TTATGAAATAAATTG-T-CT--ATGCTG-AAT-TTATCAGAGTTACATTAGCC--TTGCATTGCAC---CCAA-CGGATCTAT-AATT--T-AT-----------AGTCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGATTTTGTCTGGTTTGG-TGTTGTTAACAAACATAAGGAA--TAC-CAATCAATCAAATGTCTTCCTTGACAATA-AGATACCATTTAATTCATTAGGTAGTATCTGTATTGTAT-T---AA--TAGCTGG-GTGTT-GTA-TTGAAGTA-AAACAAATACTTTTTACGGATGTTTCAAACCAAAGATGGAGGGTT---TGTT-C-AAATCTTTCTTTTT-TTTAAATG-ATCCGAAAATTAGAGAAAAT---TGGC--TTG-AAAATATTTATTTG-TG-TTTT-A-TCCGAAGATTTTTT--TCGTT-TTATTT
gi|10 : A-CTG-ATTGTAC-TACTGAG-TAGCTGAAGTATTTGTA-TTGAATGA-TAACAAA-ACTTT---C----ATTTCAAACCAAAGA---GAGGTT---TGTT-CAAAATC----TTTTT-TTTAAATG-ATCTGAAAATTCGAGAAAATGCATGTC-TTTG-AAAATATTTATTTGCCGTTTTT-A-TCC-AAGA-TTTTT--TCG---TTATTT
gi|11 : AGTA-CTG-ATTGTACCT---AA--TAGCTGG-GTATT-GTA-TTGAAG-A-AAACAAA--CTTT---C----ATTTCAAGCCAAA------AGGTT---TGTT-CAAAATCTTCTTTTTTGTTTAGATGAATCCGAAAATTAGAGAACAA---TGGCTTTTG-AAAATATTTATTTG-CG-TTTTGA-TCCGATGA--TTTT--TCG---TTATTTaatacatttaacatctgtttcctagtcttttttacctcttaatcttatctgacacagatgaagttgatatccttttggaagttct
gi|12 : AGTA-CTG-ATTGTAC-T---AA--TTGCTGG-TTATT-GTA-TTAGAGGATATACAAA-AAACTTTAC----ATTTCAGGCCAAA--------GTTACATCTT-C--AATCTTCTTTTGT-TTTAGAT--ATC--GAAATTAGAGTAAAT---GGGC-TTTG---AATAT--------CG---TT-AGTCCGAAGA-TTTTTCATCG-TATTAataacatttaacatctgtttctatgtctctcccccccccttttattttattctgacacgatgagttgatatccttttggaagttttt
gi|13 : aaAAAATAATG----AGT------TATT-TTCA--AGT--CTATGT-TCAAA--GGGTACGTGGCA-C-AT-----------------TC------TTGATTT-CG--GCAGTGTCAG--GC-TCCACTGA-------TATA--------CAG-TGTTACA----GAGCAAC-AAAGT-CAA--A--AGG-T--TTAACTTGAATTTGA-CAAC---A-CA---A-----T--CTGCAAACAC-------------CA---GCC---------CA-TAAATTCA-CATTTCTCATCACCA-TCGCTaatacattaacattctgtttctagtctctctcccccccccctacttatcttattctgacacagatgaaggattattcctcttttggaattctccc
gi|14 : tcggcctggtttggaagaggatgcaaaggcttcagttcaaaaattaatgtgtatatgcggCTAGTATAAGCTATT-AATGTTAT-C--TGCTTAT---AAAAATGGTT--GATAT-----TATTTTGTGACAAATCCAG-T-A---ATTTGGTA--CTTCGGGCATGT-TCGAATT-AACGTAA--CAT-T-----------TTT-----GGAC-T---GC----------TTT
gi|15 : tgtggggcgtaattaatatgtccgcggcattgcagtgcgttttcgggggtgggtccagtggtatcgccatgtgaaTGAT-ATTTGA--TATT-G-CCTA-A-TTTGATACAA-ATTAAGTGGTGGAAT-----------G-AGGAGGGG-AG------GGC---GTTTA-GGGG-TTG--ACCC----C---CTTA--GTTAAAA-TA------TT-TGGTAAACGAAATT--TCTGAA----TGT-GACATGC--CC-----------TTCCTACACA-TTCC-C--GGA-T-CG---CGT-CT-GCCT-CGTTT------GTT-GGGCTTT-CGTGTATGTG
gi|16 : cctttatagcCTAGTATA--CTATTTAAGATTTATC--TGCT-AT---AAAAT--GTT---ATA------TATTT-GTGACAAATTCCA-T-GTATATTTGTAA--CTTCGGGCATG--TCGAATTAAACGTAGACCATGTA----------TTT-----Gct
gi|17 : atgtgggacgttaataaaatatgtctgcggcatgtgcagtctgcgttcgggggggtcgatggtaatcgccatgtaT-------------C--TTT-CT-TATGGCTATTCGGTCCAATATCAT--ACGTTCACTGA-------TATA--------CAG-TGTTATACA--GAG-AAG-GAAGTAAAA--A--ATG-TA-A-AAC----ATT--A-CA-C---G-AA---A-----T--CCACAA--AA-------------CACATCTCATAGTTATGAA-TCA--TTACCATTTTTTATCACCA--CGTTT---CAGTCCCATATGTATGTGGGGGCC-ATtt
gi|18 : tTTTGTGTGGTTTCGCGCATGCT--TAGA-AA----TAATAA--T---GAA-CAGAACCNNNN-NNNNNNNN-NNNN-NNNNNNNNNNNNNNNNNNNNNNNNNNN--NNNNNNNNNNNNN---NN-NNN--NNNN-ATGTG-CTCT--AT--GG-AAT-TT--------CACAGTA--------TATTGCATGCACCAA-A-TATCTAT-cgtaaaaaaa
gi|19 : AAAGTAATTCATGAGTA-GCATTATT-TCAA---GT--CTATGT-TCAAG--GGG---GTG-AA-C-CTT------------C--TTT-CTATCTTGATTT-CG--CCAAT-------------------------TATAT-----CCCA-TTGTTACA----GAGCAACGGAAGT-CAA--A--Ata
gi|2 : acaaaggtttcagttcaaaaatgtataatgcgg----------TTT-----GG-CCT---GC----------TTTGAAAGAGGGTGCA--C---AA---TGTAAA-TGGGG--AGGG-----GGGGGGGTAGGTTAATC----GGTA-ACAACATT-TCAA--AGT--CTACGT-TCATT--GGG---GTG-CA-C-CTTCTTTCTGTGTTTC--TTT-CTGTGTTCATTT-CG--CCAAT-TCAG---C-TCCACTG----------TAT-----ATCAGTGGTTACA-G---AGCAA--GAAGT-CAA--AGAATG-TA-A-AATTTAAATT--G-CATT---TCAAT--AAA---T--CCGC-------------------CA-ACATC---------GAATCA--TAA--ATTTTTCATCTCCA-T-GCTTTGACA-T-CCATATTTATT-GGGGAAC-ATAT-AAATAG------C-A----------GCCTTTGC-TT-CGAAGAGAAG---AATTAA-------TT--------------TCTC-CTGTTATAA--GTTTGAT-ATTTG---T-TT-A-T--ATA-CTT-A--CAATA-CAAGTGGGGGA-TCCAGA--GG----AGGGGGGG-GG------GGG---GTCTA-GGGG-TCC-GACCCACCCCACCTTTC--ATTAAAA-AAAATAAATT-TGCTAAATACA--TAGTCAAAA----TGTAGACA--C--CC-----------TTTC---ACATTT-C-C--GGATTTCGT--C-C-CT-GC----ATTT------GTT-G-----T-CGTCTGTGTGACTTCGCGCTAGCTTATAGA-AAAAT-TAAAAA--TGC-GAACC-TA--NNNNN-NNNNNNNN-NNNN-NNNNNNNNNNNNNNNNNNNNNNNNNNN--NNNNNNNNNNNNN---NN-NNN--NNNN-NNTTG---CTAAAT--TGAAAT-TT-TCA-----ATAGTA--------CATTGCATGC-CCAA-C-CATCTATAAATT-Aat
gi|20 : GGGGAACGTAA--TAATA----AGTC-GCAGCATG-TCA----GT--CTGCGT-TTTCG--GGG---GTG-Cgtacnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnttaaag
gi|22 : gtGGGG--GGGG----------GGTATAGTAATA----AGTA-ACAATATTATCAT--AGTG-CAACGT-TTGCA--CAG---GTG-CATC-CT-------------C--TTCTCTGTGTTggtgcttgtgagtggtaatctccatgtatcactattaaattacctgc
gi|23 : AGTA-ATG-AATGTAC-T---GA--TAGCTGG-GTACT-GTA-TTGAA-GA-AAATAAA-A--TGTTAC----ATTTCAAGCCAAA
gi|24 : atcaaAGTA-TTT-AATGTAC-T---GA--TAGCCGG-GTACT-GAA-CTGAA-GA-AAACAAA-AC--TTTAC----ATTTCAAGCCA
gi|25 : tcaaAGTA-CTG-AATGTAC-T---GA--TAGCCGG-GTACT-GTA-TCGTAGCA-AATCAAtaa
gi|26 : taatcaAGTA-CTT-AATGAAC-T---GA--TAGCCGG-GCACT-GTA-gcc
gi|3 : aatcaaCTACTATA----ATTGAATAT-AT-C--TGCT-AT---GAA-TTGGTT--AATAT------ATTT-GTGACAAATCGAA-T-G---ATTTGTAA--AT-CAATTATAT--CGATTT-AAC--ACACCAT-TA----------GTC-----GGAC-T---GA----------TTTGAA-GAGGGTGCA--CA--AA---TGTATA-TTAGG--GAA-A--CG-------TAA-GTAATC----GGTA-GC-----T-TC-------------GT-TCAAC--GTG---AAG-GA-CGTT-------------C--TTT-CTATGTTGATTT-CG--CCGATATCAG--GC-TACACTGA-------TGTAT-------CAGT-GTTAGA-G--AA-TAAC-GAAGT-CAC--A--ATG-TATATAATTTAAATT--A-CATT---G-GATGAA-----T--CCGCAA--AC--------------A-AT-TG---------AA-TCA--CAC-CATTTTTCATTCCCA-CCGCTT---CAGT-CCATATTTTTGTGGAGAACAAAAT-AA--AG--AGATCTA----------G-CT--GCATT-TGAGGAGGGATTTATTTATGCTATTATT--------------TTTC-CTGTCATAAAAGCTTGAT-AATTGATAT-TT-G-C-TGCATTTT-GTACAAT-TC-AGTGGCGGA-TCCAGA--GGG-G-A--GGNNN-NN------NNNNN-NNNNNNNNNN-NNN-NNNNN----NNNNNNNN--NNNNNNN-NN------NN-NNNNNNNNNNN--N--NNNNNN----NNNNNNNN--N--NN-----------NNNC-ATACA-TC-C-C--TGATTCCG---C-CTCT-GC---A-------------------------CTTTGTGGCTTCGTGCATGCTTA---G-AAATTATAAAAA--AGCGGAA-CATAACTTC-G-CAA--TTC-GGAT-CAA--GGT---TTTTTTATCCATTCAT--AA--GGCCAAGCT---AA-TCA--AAAT-AAA-G-T-TT--AT--Tc
gi|4 : atgtgggggactaatagatatgtcgacgcattacagcatgcgttcagggtgtgttggtttgaggtggataatctccaatccccttgtGTATA--CTGTT--AAATTAT-C--TGGT-AT---AAAA--AGTTA-GATATACATGTATTT-GTGGAAAA-CCGAGT-G---ATTTGCAA--AT-CGGGCATGT--CGAA-----CGTAA--CAT-TATTTGTCGGGTTTTAAAGAGG-G-T---GCACGCCATATGTTTTAA-AAGGTTTCAGTTC--AAACATGT-TA-T----------A--TGGGGAAAATAAAATAATA----AGCA-GCTACATT-TCAAGTAGTAACTACAT-TATAC--GGA---GTG-CA-C-CT-------------T--CTCTCTATATCAATTTTT---CCAATATCAG--GC-TCCACTTACATAATGTATAT-----ATTCGT-GTTACA-G---AGAAAT-TAAGT-CAA--A--CTG-TA-A-AATTTAAAAT--ATCATT---G-CAT--ACGCAAT--CCGTAA--ACACTTGAATCATGACA-ATAT-------------TCA--TTA-CTTTTTTCATCACCA-CCGCTT---CAGC-C-----TTAT------AA--ATACCGA-TA---AGGTC---------------T--GTGTTTCGGGGAGGGA---ATTTAT-------CTATGCTTATATGGCATTTCTCTGTTATAAAAGTTTG-----TTG---T-TTCGTT-TATA-CCT-ATACAAT-TC--GTGACGGA------G--GGG-G-AGAGGGGG-GGTATTCAAGGTA-TTC-AAGGTG-TCG-GG-------CACC--------TAAAA-AA------TT-C-CT---------T--T---------TGTAGACT--C--CCTTAATTCCCCTTTTC-AAAAA-TT-CTT--GAA-TCCGCACC-C-TT-GTGAAAATCCAAGCAGGAT-G-----T-CGTTTGTTTGGCTTTGCGCATAC-TGTAGA-AActgcatccctgtgtaacactttatacaca
gi|5 : atgttgcagctgcgttcgagggatttatctccatgcatC-A----------GTCT--GCGTT-CTAGGATGAA---ATTTAT-------AT--------------ATCT-TTGTTATAAAAGTTTGA--ACTTC---G-AT-A-T-TTT---TT-TTACAATTT--AGTTGCGGG--CCAGG--GGGTG-AAAAG----------------G-ATCTA---GG-TCG-GACCC------CCTTTC--GCTAAAATAAT-----TT-TGTTAAATAAA--T--GTAAAAAAAGT-TAGACA--C--CCCCCCCCG----TTTC-AAA-A-TT-C-CT-GGA-TCCG---C-C-CT-GC---AATTG------CGC-G-----T-CG--TGTG-GGCTTCGCGCATGCTTA---A-AAAATAT-AAAA--TGCGGAACC-TA---NNNN-NNNNNNNN-NNNN-NNNNNNNNNNNNNNNNNNNNNNNNNNN--NNNNNNNNNNNNN---NN-NNN--NNNT---TTG-C-TT---T--TG-ATA-TT-TC------ATAGTA--C--ATGCATGGCAC-CACCAATC-CATAT-T-ACTTAAT-ATTGGGTGCCATAAGCAGGC---------TGCAAAT--CGGATAGAAAATTTCA-TTCGT---TTTAAtaatattgaag
gi|6 : gtaataaatattatctttaTTT--GCTGAAA-CA------TTATGTTAAAT--------TTAAAA----TGTAGACA--C--TC-----------TT-C-AAACA-GT-C-CT-GGA-TCTGT--C-C-CT-GC---AATTT------GTTTG-----TGCGTCTGTGTGACTCGACGCATGCTTATAGACAAATTGAAAAAAGATGCGGAACCATAACTTTTGTCAGAG--CAGGAT-CAAGG---ATATTTTGGATGAATTAATTAAACTAG---AGCT---AA-TAA--AAAT-AAATATC-CT--ATA-TG-AAA-TT-C------TATAGTAG-CACTTGCAT------CACCAA-C--ATCTA--AATT-AT-ATT--ATGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATAGATTCTGTCTGGT------GGTGTAAAAAAACATAAGGAA--TAC-AAATCAAT--AATGCTTTT----ACAATACA
gi|7 : cA------TT-TG-TAAAT-----T--TCAAAA----TGTAGACA--CTTCT-----------TTCC-AAACA-TT-C-CCTGGA-TCTG---TTC-CTAGC---ATTTTT-----GTT-G-----T-CGTCTGT-TGA--TCGCGCTCG--TATAGA-AA-TTGAAAAAA--TGCGGAACCNNNNNNNNNN-NNNNNNNN-NNNN-NNNNNNNNNNNNNNNNNNNNNNNNNNN--NNNNNNNNNNNNN---NNNTTG--ATAT-A---------------TG-AATCTT-TCA----TA--GTAA----TTG---TGCATGCACCAG-C-CATCTAT-A-TT-ATTATT--ATGTAACATTCTGACTATTATCTATGGAAATGCCGAATAGAAATTTTCAGCTCGTTAATTTAATAGTAT----------GAT------TGATCT-GTTGGTGTAAACAAAC-TAAGGAGATTACAAAATCAATC-AATGCCTT-CTTGACAAAACAGATAaga
gi|8 : tttgctgactacGTATG--CTATTCAAT-TTATCT--TGTT-TTTCCAAAAT--GTTTGGATAT------ATCT-G--ACAAA--CGA-TTG---ATTTGTAA----TCTGGCA-AT-----ACC-GACGTAG--CAT-TA----------TTT-----GG-C-CTTGGC----------TTTGAA-AAGGACGCA--C---GA---TGTATA-TGGGG--GAA----------AGGTACCGTAAGC----AGTAAGTAACA----------------ATGT-TCAAACGGGG---GTG-CA-C-CT-------------TCTTTCTCTATGTTGAATTTCG--C-AATATCAG--GC-TCCAgaa
gi|8 : taagcattgtacctgcgttgggggggggggggggggggtattttcatGGGGAAC-ATAA-CA-TTG------C-A----------GCCT--GCGTT-CAA--AGGAA---ATTaacaaagtaaaatggggaacataacattgcagcctgcgttcaaaggaaattagctacaatgtatactgtaatttttt
gi|9 : taagcattgtacctgcgttgggggggggggggggggggtattttcatgtatgctattcaatttatcttgtttttccaaaatgtttggatatatctgacaaacgattgatttgtaatctggcaataccgacgtagcattatttggccttggctttgaaaaggacgcacgatgtatatgggggaaaggtaccgtaagcagtaagtaacaatgttcaaacgggggtgcaccttctttctctatgttgaatttcgcaatatcaggctccaaacaaagtaaaatAGTA-CT--ATTGTAC-T---AAAGTAGCTGG-GTAAT-GTAATTGAAG----AATCAA-ACTTT--AC----ATTTCAAGCCGAA-----AAGGTT---TGTTTCAA--TCTTCTTTTTG-TTTAGATG-ATCCGAAATTAAGAGTAAA----TGGC-TTTGAAAAATATTTATTTG-CG--TTG-A-TC--GAGA-TTTTT--TCG---TTATTTagctacaatgtatactgtaatttttt
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|21 ): ATGTGGGGGACGTAAATAAAATAAGTCGCGGCATTGCAGTCTCCCTGCGTTCGGGGGTGGGTGAGTGGGTAATCTCCATGTATACTATTAAATTTATCCT
Alignments
lowQualScore : 111 1 2222 111 111 111 222222 111111111 11111 22 22 3333333333333333333333333333333333333333 333333 111 55555555555555555 111111 222222222 111 3333333333333333 1 11111 222222222 33333333 11 2222 111 88888888888888888888888888888888888888888888888888888888888888888888888 111 333 1 22 66666666666666666666666 111 66666666666666666666666 22222222222222222 2222 222222222222222 333333333333333 1 111111 111 111111 22222222 11111 44444444444 11 1 22222 222222222222222222222222 1111111 11111111 11111111111 11111111111 55555555555555555555555555555555555555555555555 11 1111 1 333333333333333333333333333 111 5555555555 11 33333 11 1 22 11 11 11 11111111111111 444444 111 1 2222 11 11 333
lowQualScore : 2 000 3 22 2222 6 111 555 666 444444 6 7 666666666 88888 22 1 777 00 6 7777777777777777777777777777777777777777 8 000000 444 0 8 2 44444444444444444 6 333333 4 22 4 111111111 4 777 333 4 5 5 4444444444444444 3 5 77777 5 888 5 000000000 11111111 33 7777 3 88 77 8888 6 777 3 3 55555555555555555555555555555555555555555555555555555555555555555555555 99 1 77 1 111 000 6 00 6 8 22222222222222222222222 5 99 77 3 111 33333333333333333333333 8 777 99 1 44444444444444444 6 3333 1 999999999999999 1 0 777777777777777 0 7 6 66 0 999999 3 111 0 5 999999 5 4 33333333 1 22222 66 66 00000000000 2 5 0 5 5 5 66 0 00000 5 5 999999999999999999999999 5 0 3 5 66 555 77 0 4 6 6 3 5 0000000 5 22222222 0 11 11 00000000000 00000000000 22222222222222222222222222222222222222222222222 1 3 33 3 2222 6 5 88 0 333333333333333333333333333 1 99 1 8 222 5555555555 11 66666 7 88 3 00 88 6 4 55 1 4 777 00 0 4 4 4 44 5 33333333333333 333333 444 8 0 0 0 8 8 3 1 0000 88 88 0 8 88 8 8 5 88 11 666
lowQualScore : . ... . .. .... . ... ... ... ...... . . ......... ..... .. . ... .. . ........................................ . ...... ... . . . ................. . ...... . .. . ......... . ... ... . . . ................ . . ..... . ... . ......... ........ .. .... . .. .. .... . ... . . ....................................................................... .. . .. . ... ... . .. . . ....................... . .. .. . ... ....................... . ... .. . ................. . .... . ............... . . ............... . . . .. . ...... . ... . . ...... . . ........ . ..... .. .. ........... . . . . . . .. . ..... . . ........................ . . . . .. ... .. . . . . . . ....... . ........ . .. .. ........... ........... ............................................... . . .. . .... . . .. . ........................... . .. . . ... .......... .. ..... . .. . .. .. . . .. . . ... .. . . . . .. . .............. ...... ... . . . . . . . . .... .. .. . . .. . . . .. .. ...
lowQualScore : 5 222 8 77 5555 7 777 888 888 000000 7 3 777777777 77777 22 7 333 77 7 9999999999999999999999999999999999999999 0 222222 000 8 0 5 99999999999999999 2 000000 4 99 4 111111111 4 111 999 4 0 0 1111111111111111 3 4 55555 1 222 0 777777777 00000000 44 3333 0 77 99 0000 7 555 2 2 77777777777777777777777777777777777777777777777777777777777777777777777 22 0 77 0 333 888 0 22 7 0 88888888888888888888888 2 22 77 7 777 22222222222222222222222 0 000 88 8 88888888888888888 7 2222 0 000000000000000 0 2 888888888888888 8 2 7 88 2 222222 3 111 1 7 444444 0 8 99999999 6 00000 99 99 00000000000 1 0 2 0 0 0 99 0 88888 0 0 111111111111111111111111 0 1 2 0 99 444 99 7 3 4 4 7 7 4444444 7 77777777 1 11 44 33333333333 77777777777 00000000000000000000000000000000000000000000000 0 2 00 2 7777 7 6 88 0 888888888888888888888888888 0 88 0 0 222 0000000000 00 00000 3 33 3 00 77 7 4 66 0 4 888 66 7 4 4 4 44 0 99999999999999 000000 000 0 6 8 8 0 0 2 4 0000 88 88 8 0 66 0 0 0 88 00 444
consensus : CTAGTATA--CTATTTAANATTATTC--TGCT-AT---AAAATTGGTT--GATAT-----TATTT-GTGACAAATCCGA-T-G---ATTTGTAA--ATTCGGGCATGT-TCGAATT-AACGTAAACCAT-TA----------TTT-----GG-C-T---GC----------TTTGAA-GAGGGTGCA--CC--AA---TGTATA-TGGGG--GGGGA--CGGGGGAGGTAAAGTAATC----GGTA-GCAACATT-TCAA--AGT--CTACGT-TCAAN--GGG---GTG-CA-C-CT-------------C--TTC-CTGTGTTGATTTTCG--CCAATATCAG--GC-TCCACTGA-------TATAT-----ATCAGTTGTTACA-G--GAGCAAC-GAAGTCAA--A--A-TG-TA-ATAATTTAAATT--A-CAT--C---GAAT-----A--T--CCGCAA--AC-------------CA-ATNTCG---------A-TCA--TNAC-ATTTTTCATCNCCA-CCGCTTTGACAGT-CCATATTTATNCGGGGAAC-ATA-TAA-TAG--AGGTC-A----------GCCT--GCG-TTCGAGGAGGGA---ATTTAT-------TT--------------TTTC-CTGTTATAAAAGTTTGAT-ATTTG---T-TT-G-T-TATA-CTT-ATACAATATCAAGTGGCGGA-TCCAGA--GGG-G-AGGGGGGG-GG------GGGTG-GTCTAAGGGG-TCG-GACCC----CACCTTTC--GTTAAAA-AA------TT-TGCTAAATAAA--T--TCAAAA----TGTAGACA--C--CC-----------TTTC-AAACA-TT-C-C--GGA-TCCG---C-C-CT-GC---AATTT------GTT-G-----T-CGTCTGTGTGGCTTCGCGCATGCTTATAGA-AAATTGTAAAAA--TGCGGAACCATAACTTCTG-CANAGTTC-GGAT-CAAGGGGTATGTTTTTGATNAATTNAT--AACTAGCCAAGCT---AA-TNA--AAAT-AANTG-C-CT--AT--TG-AAT-TT-TCA----TATAGTAG-C--TTGCATTGCACGCACCAA-C-CATCTAT-AATT-AT-ATT--ATGCNACAAGCCGGCTATTATCTATGNAAATGCCGGATAGAAANTTTCAGCTCGTTAATTTAATAGTATNNNNNNNATAGATTCTGTCTGGTCT-G-TGGTGTAAACAAACATAAGGAA--TAC-AAATCAATC-AATGCCTTCCTTGACAATACAGATACCATTTAATTCATTAGGTAGTA-CTG-ANTGTAC-T---GA--TAGCCGG-GTACT-GTA-TTGAAGGA-AAACAAA-ACTTTTTAC----ATTTCAAGCCAAAGA---AAGGTT---TGTT-CAAAATCTTCTTTTTT-TTTAGATG-ATCCGAAAATTAGAGAAAAT---TGGC-TTTG-AAAATATTTATTTG-CG-TTTT-A-TCCGAAGA-TTTTT--TCG-T-TTATTT
Reference ( family-271 ) : CTAGTATA--CTATTTAANATTATTC--TGCT-AT---AAAATTGGTT--GATAT-----TATTT-GTGACAAATCCGA-T-G---ATTTGTAA--ATTCGGGCATGT-TCGAATT-AACGTAAACCAT-TA----------TTT-----GG-C-T---GC----------TTTGAA-GAGGGTGCA--CC--AA---TGTATA-TGGGG--GGGGA--CGGGGGAGGTAAAGTAATC----GGTA-GCAACATT-TCAA--AGT--CTACGT-TCAAN--GGG---GTG-CA-C-CT-------------C--TTC-CTGTGTTGATTTTCG--CCAATATCAG--GC-TCCACTGA-------TATAT-----ATCAGTTGTTACA-G--GAGCAAC-GAAGTCAA--A--A-TG-TA-ATAATTTAAATT--A-CAT--C---GAAT-----A--T--CCGCAA--AC-------------CA-ATNTCG---------A-TCA--TNAC-ATTTTTCATCNCCA-CCGCTTTGACAGT-CCATATTTATNCGGGGAAC-ATA-TAA-TAG--AGGTC-A----------GCCT--GCG-TTCGAGGAGGGA---ATTTAT-------TT--------------TTTC-CTGTTATAAAAGTTTGAT-ATTTG---T-TT-G-T-TATA-CTT-ATACAATATCAAGTGGCGGA-TCCAGA--GGG-G-AGGGGGGG-GG------GGGTG-GTCTAAGGGG-TCG-GACCC----CACCTTTC--GTTAAAA-AA------TT-TGCTAAATAAA--T--TCAAAA----TGTAGACA--C--CC-----------TTTC-AAACA-TT-C-C--GGA-TCCG---C-C-CT-GC---AATTT------GTT-G-----T-CGTCTGTGTGGCTTCGCGCATGCTTATAGA-AAATTGTAAAAA--TGCGGAACCATAACTTCTG-CANAGTTC-GGAT-CAAGGGGTATGTTTTTGATNAATTNAT--AACTAGCCAAGCT---AA-TNA--AAAT-AANTG-C-CT--AT--TG-AAT-TT-TCA----TATAGTAG-C--TTGCATTGCACGCACCAA-C-CATCTAT-AATT-AT-ATT--ATGCNACAAGCCGGCTATTATCTATGNAAATGCCGGATAGAAANTTTCAGCTCGTTAATTTAATAGTATNNNNNNNATAGATTCTGTCTGGTCT-G-TGGTGTAAACAAACATAAGGAA--TAC-AAATCAATC-AATGCCTTCCTTGACAATACAGATACCATTTAATTCATTAGGTAGTA-CTG-ANTGTAC-T---GA--TAGCCGG-GTACT-GTA-TTGAAGGA-AAACAAA-ACTTTTTAC----ATTTCAAGCCAAAGA---AAGGTT---TGTT-CAAAATCTTCTTTTTT-TTTAGATG-ATCCGAAAATTAGAGAAAAT---TGGC-TTTG-AAAATATTTATTTG-CG-TTTT-A-TCCGAAGA-TTTTT--TCG-T-TTATTT
gi|1 : CTA-TATC--TTATTTAAAATTATTTCTTGCT-AT---ATAATTGGTT--GATAT-----TATTT-GTGACAAATCC---T-A---ATTTGTAATTATTCAGGCATGTCTCGAATT-A-CGTAAATAAT-T-----------TTT-----GG-C-T---GC----------TTTGAA-GAGGGTGCA--CCGCAA---TGTATACTGGGGTGGGGGAGCCGGGGGAAGTCAAGTATCC----GGTA-ACAACATT-CCGA--AGT--CTACGTGTCAAT--AGGTT-GTG-CA-C-CT-------------C--TTC-CTGTGTTCATTTTCGGTCCAATATCAGTTGC-TCCACTTA-------TACATGGAACATTAGTTGTTACA-GTTGAGCAAC-GAAGTCAATTA--A-TGCTA-ATAATGTA--TT--T-TTT--TTAAGAAT-----A--TTCCCGCAG--AC-------------TA-ATTTCG---------A-TCA--TCAT-TTATTTCATCTCCAGCTGCTTTGACAGTGCCATATTCATCCGGGGAAC-ATA-TAA-TAACTAGGTC-ACGTCATTCAAGCCT--GTG-CTCGAAGAGAGA---ATTAAT-------TT--------------TCTC-CTGTTATA----TTGGATTATTTG---T-TT-A-T-TATA-CTC-ATAAAGTATCACGTGGGGGAATCCAGAAAGAG-GTAGGGGGGGCGG------GGGTGTGTCTAAGGGGGTCGTGACTC----CACCTTTTCAGTTAAAT-AA------TT-TGCTAAATAAA--T--TCAAA-----TGTAGACA--C--TC-----------TTTC-AAACA-TT-C-T--GGA-TCTG---C-C-CT-GC---AATTT------GTT-G-----T-CGTCTGTGTGACTTCGCGCATGCTTATAGG-ATATTGTTAAAA--TGCGGAACTATTACTTCTG-CATAGTTC-GGATCCAAGGGGTATGTTTTTGATTAATTTTT--AATTAACTAAGCTTGGAA-TTATGAAATAAATTG-T-CT--ATGCTG-AAT-TTATCAGAGTTACATTAGCC--TTGCATTGCAC---CCAA-CGGATCTAT-AATT--T-AT-----------AGTCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGATTTTGTCTGGTTTGG-TGTTGTTAACAAACATAAGGAA--TAC-CAATCAATCAAATGTCTTCCTTGACAATA-AGATACCATTTAATTCATTAGGTAGTATCTGTATTGTAT-T---AA--TAGCTGG-GTGTT-GTA-TTGAAGTA-AAACAAATACTTTTTACGGATGTTTCAAACCAAAGATGGAGGGTT---TGTT-C-AAATCTTTCTTTTT-TTTAAATG-ATCCGAAAATTAGAGAAAAT---TGGC--TTG-AAAATATTTATTTG-TG-TTTT-A-TCCGAAGATTTTTT--TCGTT-TTATTT
gi|10 : A-CTG-ATTGTAC-TACTGAG-TAGCTGAAGTATTTGTA-TTGAATGA-TAACAAA-ACTTT---C----ATTTCAAACCAAAGA---GAGGTT---TGTT-CAAAATC----TTTTT-TTTAAATG-ATCTGAAAATTCGAGAAAATGCATGTC-TTTG-AAAATATTTATTTGCCGTTTTT-A-TCC-AAGA-TTTTT--TCG---TTATTT
gi|11 : AGTA-CTG-ATTGTACCT---AA--TAGCTGG-GTATT-GTA-TTGAAG-A-AAACAAA--CTTT---C----ATTTCAAGCCAAA------AGGTT---TGTT-CAAAATCTTCTTTTTTGTTTAGATGAATCCGAAAATTAGAGAACAA---TGGCTTTTG-AAAATATTTATTTG-CG-TTTTGA-TCCGATGA--TTTT--TCG---TTATTTaatacatttaacatctgtttcctagtcttttttacctcttaatcttatctgacacagatgaagttgatatccttttggaagttct
gi|12 : AGTA-CTG-ATTGTAC-T---AA--TTGCTGG-TTATT-GTA-TTAGAGGATATACAAA-AAACTTTAC----ATTTCAGGCCAAA--------GTTACATCTT-C--AATCTTCTTTTGT-TTTAGAT--ATC--GAAATTAGAGTAAAT---GGGC-TTTG---AATAT--------CG---TT-AGTCCGAAGA-TTTTTCATCG-TATTAataacatttaacatctgtttctatgtctctcccccccccttttattttattctgacacgatgagttgatatccttttggaagttttt
gi|13 : aaAAAATAATG----AGT------TATT-TTCA--AGT--CTATGT-TCAAA--GGGTACGTGGCA-C-AT-----------------TC------TTGATTT-CG--GCAGTGTCAG--GC-TCCACTGA-------TATA--------CAG-TGTTACA----GAGCAAC-AAAGTCAA--A--A-GG-T--TTAACTTGAATTTGA-CAA--C---ACA------A--T--CTGCAAACAC-------------CA---GCCC---------A-TAAATTCAC-ATTTCTCATCACCA-TCGCTaatacattaacattctgtttctagtctctctcccccccccctacttatcttattctgacacagatgaaggattattcctcttttggaattctccc
gi|14 : tcggcctggtttggaagaggatgcaaaggcttcagttcaaaaattaatgtgtatatgcggCTAGTATAAGCTATT-AATGTTAT-C--TGCTTAT---AAAAATGGTT--GATAT-----TATTTTGTGACAAATCCAG-T-A---ATTTGGTA--CTTCGGGCATGT-TCGAATT-AACGTAA--CAT-T-----------TTT-----GGAC-T---GC----------TTT
gi|15 : tgtggggcgtaattaatatgtccgcggcattgcagtgcgttttcgggggtgggtccagtggtatcgccatgtgaaTGAT-ATTTGA--TATT-G-CCTA-A-TTTGATACAA-ATTAAGTGGTGGAAT-----------G-AGGAGGGG-AG------GGC---GTTTA-GGGG-TTG--ACCC----C---CTTA--GTTAAAA-TA------TT-TGGTAAACGAAATT--TCTGAA----TGT-GACATGC--CC-----------TTCCTACACA-TTCC-C--GGA-T-CG---CGT-CT-GCCT-CGTTT------GTT-GGGCTTT-CGTGTATGTG
gi|16 : cctttatagcCTAGTATA--CTATTTAAGATTTATC--TGCT-AT---AAAAT--GTT---ATA------TATTT-GTGACAAATTCCA-T-GTATATTTGTAA--CTTCGGGCATG--TCGAATTAAACGTAGACCATGTA----------TTT-----Gct
gi|17 : atgtgggacgttaataaaatatgtctgcggcatgtgcagtctgcgttcgggggggtcgatggtaatcgccatgtaT-------------C--TTT-CT-TATGGCTATTCGGTCCAATATCAT--ACGTTCACTGA-------TATA--------CAGT-GTTATACA--GAG-AAG-GAAGTAAA--A--AATG-TA-A-AAC----ATT--A-CA---C---GAA------A--T--CCACAA--AA-------------CACATCTCATAGTTATGAA-TCA--TTACCATTTTTTATCACCA--CGTTT---CAGTCCCATATGTATGTGGGGGCC-ATtt
gi|18 : tTTTGTGTGGTTTCGCGCATGCT--TAGA-AA----TAATAA--T---GAA-CAGAACCNNNN-NNNNNNNN-NNNN-NNNNNNNNNNNNNNNNNNNNNNNNNNN--NNNNNNNNNNNNN---NN-NNN--NNNN-ATGTG-CTCT--AT--GG-AAT-TT--------CACAGTA--------TATTGCATGCACCAA-A-TATCTAT-cgtaaaaaaa
gi|19 : AAAGTAATTCATGAGTA-GCATTATT-TCAA---GT--CTATGT-TCAAG--GGG---GTG-AA-C-CTT------------C--TTT-CTATCTTGATTT-CG--CCAAT-------------------------TATAT-----CCCA-TTGTTACA----GAGCAACGGAAGTCAA--A--A-ta
gi|2 : acaaaggtttcagttcaaaaatgtataatgcgg----------TTT-----GG-CCT---GC----------TTTGAAAGAGGGTGCA--C---AA---TGTAAA-TGGGG--AGGG-----GGGGGGGTAGGTTAATC----GGTA-ACAACATT-TCAA--AGT--CTACGT-TCATT--GGG---GTG-CA-C-CTTCTTTCTGTGTTTC--TTT-CTGTGTTCATTT-CG--CCAAT-TCAG---C-TCCACTG----------TAT-----ATCAGTGGTTACA-G---AGCAA--GAAGTCAA--AGAA-TG-TA-A-AATTTAAATT--G-CATTTC----AAT-----AAAT--CCGC-------------------CA-ACATCG---------AATCA--TAA--ATTTTTCATCTCCA-T-GCTTTGACA-T-CCATATTTATT-GGGGAAC-ATA-TAAATAG------C-A----------GCCTTTGC--TTCGAAGAGAAG---AATTAA-------TT--------------TCTC-CTGTTATAA--GTTTGAT-ATTTG---T-TT-A-T--ATA-CTT-A--CAATA-CAAGTGGGGGA-TCCAGA--GG----AGGGGGGG-GG------GGG---GTCTA-GGGG-TCC-GACCCACCCCACCTTTC--ATTAAAA-AAAATAAATT-TGCTAAATACA--TAGTCAAAA----TGTAGACA--C--CC-----------TTTC---ACATTT-C-C--GGATTTCGT--C-C-CT-GC----ATTT------GTT-G-----T-CGTCTGTGTGACTTCGCGCTAGCTTATAGA-AAAAT-TAAAAA--TGC-GAACC-TA--NNNNN-NNNNNNNN-NNNN-NNNNNNNNNNNNNNNNNNNNNNNNNNN--NNNNNNNNNNNNN---NN-NNN--NNNN-NNTTG---CTAAAT--TGAAAT-TT-TCA-----ATAGTA--------CATTGCATGC-CCAA-C-CATCTATAAATT-Aat
gi|20 : GGGGAACGTAA--TAATA----AGTC-GCAGCATG-TCA----GT--CTGCGT-TTTCG--GGG---GTG-Cgtacnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnttaaag
gi|22 : gtGGGG--GGGG----------GGTATAGTAATA----AGTA-ACAATATTATCAT--AGTG-CAACGT-TTGCA--CAG---GTG-CATC-CT-------------C--TTCTCTGTGTTggtgcttgtgagtggtaatctccatgtatcactattaaattacctgc
gi|23 : AGTA-ATG-AATGTAC-T---GA--TAGCTGG-GTACT-GTA-TTGAA-GA-AAATAAA-A--TGTTAC----ATTTCAAGCCAAA
gi|24 : atcaaAGTA-TTT-AATGTAC-T---GA--TAGCCGG-GTACT-GAA-CTGAA-GA-AAACAAA-AC--TTTAC----ATTTCAAGCCA
gi|25 : tcaaAGTA-CTG-AATGTAC-T---GA--TAGCCGG-GTACT-GTA-TCGTAGCA-AATCAAtaa
gi|26 : taatcaAGTA-CTT-AATGAAC-T---GA--TAGCCGG-GCACT-GTA-gcc
gi|3 : aatcaaCTACTATA----ATTGAATAT-AT-C--TGCT-AT---GAA-TTGGTT--AATAT------ATTT-GTGACAAATCGAA-T-G---ATTTGTAA--AT-CAATTATAT--CGATTT-AAC--ACACCAT-TA----------GTC-----GGAC-T---GA----------TTTGAA-GAGGGTGCA--CA--AA---TGTATA-TTAGG--GAA-A--CG-------TAA-GTAATC----GGTA-GC-----T-TC-------------GT-TCAAC--GTG---AAG-GA-CGTT-------------C--TTT-CTATGTTGATTT-CG--CCGATATCAG--GC-TACACTGA-------TGTAT-------CAGT-GTTAGA-G--AA-TAAC-GAAGTCAC--A--A-TG-TATATAATTTAAATT--A-CAT--T---GGATGA---A--T--CCGCAA--AC--------------A-AT-TGA---------A-TCA--CACC-ATTTTTCATTCCCA-CCGCTT---CAGT-CCATATTTTTGTGGAGAACAAAA-TAA--AG--AGATCTA----------G-CT--GCA-TTTGAGGAGGGATTTATTTATGCTATTATT--------------TTTC-CTGTCATAAAAGCTTGAT-AATTGATAT-TT-G-C-TGCATTTT-GTACAAT-TC-AGTGGCGGA-TCCAGA--GGG-G-A--GGNNN-NN------NNNNN-NNNNNNNNNN-NNN-NNNNN----NNNNNNNN--NNNNNNN-NN------NN-NNNNNNNNNNN--N--NNNNNN----NNNNNNNN--N--NN-----------NNNC-ATACA-TC-C-C--TGATTCCG---C-CTCT-GC---A-------------------------CTTTGTGGCTTCGTGCATGCTTA---G-AAATTATAAAAA--AGCGGAA-CATAACTTC-G-CAA--TTC-GGAT-CAA--GGT---TTTTTTATCCATTCAT--AA--GGCCAAGCT---AA-TCA--AAAT-AAA-G-T-TT--AT--Tc
gi|4 : atgtgggggactaatagatatgtcgacgcattacagcatgcgttcagggtgtgttggtttgaggtggataatctccaatccccttgtGTATA--CTGTT--AAATTAT-C--TGGT-AT---AAAA--AGTTA-GATATACATGTATTT-GTGGAAAA-CCGAGT-G---ATTTGCAA--AT-CGGGCATGT--CGAA-----CGTAA--CAT-TATTTGTCGGGTTTTAAAGAGG-G-T---GCACGCCATATGTTTTAA-AAGGTTTCAGTTC--AAACATGT-TA-T----------A--TGGGGAAAATAAAATAATA----AGCA-GCTACATT-TCAAGTAGTAACTACAT-TATAC--GGA---GTG-CA-C-CT-------------T--CTCTCTATATCAATTTTT---CCAATATCAG--GC-TCCACTTACATAATGTATAT-----ATTCG-TGTTACA----GAGAAAT-TAAGTCAA--A--C-TG-TA-A-AATTTAAAAT--ATCAT--T---GCATACGCAA--T--CCGTAA--ACACTTGAATCATGACA-ATAT-------------TCA--TTAC-TTTTTTCATCACCA-CCGCTT---CAGC-C-----TTAT------AA--ATACCGA-TA---AGGT---------------CT--GTGTTTCGGGGAGGGA---ATTTAT-------CTATGCTTATATGGCATTTCTCTGTTATAAAAGTTTG-----TTG---T-TTCGTT-TATA-CCT-ATACAAT-TC--GTGACGGA------G--GGG-G-AGAGGGGG-GGTATTCAAGGTA-TTC-AAGGTG-TCG-GG-------CACC--------TAAAA-AA------TT-C-CT---------T--T---------TGTAGACT--C--CCTTAATTCCCCTTTTC-AAAAA-TT-CTT--GAA-TCCGCACC-C-TT-GTGAAAATCCAAGCAGGAT-G-----T-CGTTTGTTTGGCTTTGCGCATAC-TGTAGA-AActgcatccctgtgtaacactttatacaca
gi|5 : atgttgcagctgcgttcgagggatttatctccatgcatC-A----------GTCT--GCG-TTCTAGGATGAA---ATTTAT-------AT--------------ATCT-TTGTTATAAAAGTTTGA--ACTTC---G-AT-A-T-TTT---TT-TTACAATTT--AGTTGCGGG--CCAGG--GGGTG-AAAAG----------------G-ATCTA---GG-TCG-GACCC------CCTTTC--GCTAAAATAAT-----TT-TGTTAAATAAA--T--GTAAAAAAAGT-TAGACA--C--CCCCCCCCG----TTTC-AAA-A-TT-C-CT-GGA-TCCG---C-C-CT-GC---AATTG------CGC-G-----T-CG--TGTG-GGCTTCGCGCATGCTTA---A-AAAATAT-AAAA--TGCGGAACC-TA---NNNN-NNNNNNNN-NNNN-NNNNNNNNNNNNNNNNNNNNNNNNNNN--NNNNNNNNNNNNN---NN-NNN--NNNT---TTG-C-TT---T--TG-ATA-TT-TC------ATAGTA--C--ATGCATGGCAC-CACCAATC-CATAT-T-ACTTAAT-ATTGGGTGCCATAAGCAGGC---------TGCAAAT--CGGATAGAAAATTTCA-TTCGT---TTTAAtaatattgaag
gi|6 : gtaataaatattatctttaTTT--GCTGAAA-CA------TTATGTTAAAT--------TTAAAA----TGTAGACA--C--TC-----------TT-C-AAACA-GT-C-CT-GGA-TCTGT--C-C-CT-GC---AATTT------GTTTG-----TGCGTCTGTGTGACTCGACGCATGCTTATAGACAAATTGAAAAAAGATGCGGAACCATAACTTTTGTCAGAG--CAGGAT-CAAGG---ATATTTTGGATGAATTAATTAAACTAG---AGCT---AA-TAA--AAAT-AAATATC-CT--ATA-TG-AAA-TT-C------TATAGTAG-CACTTGCAT------CACCAA-C--ATCTA--AATT-AT-ATT--ATGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATAGATTCTGTCTGGT------GGTGTAAAAAAACATAAGGAA--TAC-AAATCAAT--AATGCTTTT----ACAATACA
gi|7 : cA------TT-TG-TAAAT-----T--TCAAAA----TGTAGACA--CTTCT-----------TTCC-AAACA-TT-C-CCTGGA-TCTG---TTC-CTAGC---ATTTTT-----GTT-G-----T-CGTCTGT-TGA--TCGCGCTCG--TATAGA-AA-TTGAAAAAA--TGCGGAACCNNNNNNNNNN-NNNNNNNN-NNNN-NNNNNNNNNNNNNNNNNNNNNNNNNNN--NNNNNNNNNNNNN---NNNTTG--ATAT-A---------------TG-AATCTT-TCA----TA--GTAA----TTG---TGCATGCACCAG-C-CATCTAT-A-TT-ATTATT--ATGTAACATTCTGACTATTATCTATGGAAATGCCGAATAGAAATTTTCAGCTCGTTAATTTAATAGTAT----------GAT------TGATCT-GTTGGTGTAAACAAAC-TAAGGAGATTACAAAATCAATC-AATGCCTT-CTTGACAAAACAGATAaga
gi|8 : tttgctgactacGTATG--CTATTCAAT-TTATCT--TGTT-TTTCCAAAAT--GTTTGGATAT------ATCT-G--ACAAA--CGA-TTG---ATTTGTAA----TCTGGCA-AT-----ACC-GACGTAG--CAT-TA----------TTT-----GG-C-CTTGGC----------TTTGAA-AAGGACGCA--C---GA---TGTATA-TGGGG--GAA----------AGGTACCGTAAGC----AGTAAGTAACA----------------ATGT-TCAAACGGGG---GTG-CA-C-CT-------------TCTTTCTCTATGTTGAATTTCG--C-AATATCAG--GC-TCCAgaa
gi|8 : taagcattgtacctgcgttgggggggggggggggggggtattttcatGGGGAAC-ATA-ACA-TTG------C-A----------GCCT--GCG-TTCAA--AGGAA---ATTaacaaagtaaaatggggaacataacattgcagcctgcgttcaaaggaaattagctacaatgtatactgtaatttttt
gi|9 : taagcattgtacctgcgttgggggggggggggggggggtattttcatgtatgctattcaatttatcttgtttttccaaaatgtttggatatatctgacaaacgattgatttgtaatctggcaataccgacgtagcattatttggccttggctttgaaaaggacgcacgatgtatatgggggaaaggtaccgtaagcagtaagtaacaatgttcaaacgggggtgcaccttctttctctatgttgaatttcgcaatatcaggctccaaacaaagtaaaatAGTA-CT--ATTGTAC-T---AAAGTAGCTGG-GTAAT-GTAATTGAAG----AATCAA-ACTTT--AC----ATTTCAAGCCGAA-----AAGGTT---TGTTTCAA--TCTTCTTTTTG-TTTAGATG-ATCCGAAATTAAGAGTAAA----TGGC-TTTGAAAAATATTTATTTG-CG--TTG-A-TC--GAGA-TTTTT--TCG---TTATTTagctacaatgtatactgtaatttttt
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|21 ): ATGTGGGGGACGTAAATAAAATAAGTCGCGGCATTGCAGTCTCCCTGCGTTCGGGGGTGGGTGAGTGGGTAATCTCCATGTATACTATTAAATTTATCCT
Alignments
lowQualScore : 111 1 2222 111 111 111 222222 111111111 11111 22 22 3333333333333333333333333333333333333333 333333 111 55555555555555555 111111 222222222 111 3333333333333333 1 11111 222222222 33333333 11 2222 111 88888888888888888888888888888888888888888888888888888888888888888888888 111 333 1 22 66666666666666666666666 111 66666666666666666666666 22222222222222222 2222 222222222222222 333333333333333 1 111111 111 111111 22222222 11111 44444444444 11 1 22222 222222222222222222222222 1111111 11111111 11111111111 11111111111 55555555555555555555555555555555555555555555555 11 1111 1 333333333333333333333333333 111 5555555555 11 33333 11 1 22 11 11 11 11111111111111 444444 111 1 2222 11 11 333
lowQualScore : 2 000 3 22 2222 6 111 555 666 444444 6 7 666666666 88888 22 1 777 00 6 7777777777777777777777777777777777777777 8 000000 444 0 8 2 44444444444444444 6 333333 4 22 4 111111111 4 777 333 4 5 5 4444444444444444 3 5 77777 5 888 5 000000000 11111111 33 7777 3 88 77 8888 6 777 3 3 55555555555555555555555555555555555555555555555555555555555555555555555 99 1 77 1 111 000 6 00 6 8 22222222222222222222222 5 99 77 3 111 33333333333333333333333 8 777 99 1 44444444444444444 6 3333 1 999999999999999 1 0 777777777777777 0 7 6 66 0 999999 3 111 0 5 999999 5 4 33333333 1 22222 66 66 00000000000 2 5 0 5 5 5 66 0 00000 5 5 999999999999999999999999 5 0 3 5 66 555 77 0 4 6 6 3 5 0000000 5 22222222 0 11 11 00000000000 00000000000 22222222222222222222222222222222222222222222222 1 3 33 3 2222 6 5 88 0 333333333333333333333333333 1 99 1 8 222 5555555555 11 66666 7 88 3 00 88 6 4 55 1 4 777 00 0 4 4 4 44 5 33333333333333 333333 444 8 0 0 0 8 8 3 1 0000 88 88 0 8 88 8 8 5 88 11 666
lowQualScore : . ... . .. .... . ... ... ... ...... . . ......... ..... .. . ... .. . ........................................ . ...... ... . . . ................. . ...... . .. . ......... . ... ... . . . ................ . . ..... . ... . ......... ........ .. .... . .. .. .... . ... . . ....................................................................... .. . .. . ... ... . .. . . ....................... . .. .. . ... ....................... . ... .. . ................. . .... . ............... . . ............... . . . .. . ...... . ... . . ...... . . ........ . ..... .. .. ........... . . . . . . .. . ..... . . ........................ . . . . .. ... .. . . . . . . ....... . ........ . .. .. ........... ........... ............................................... . . .. . .... . . .. . ........................... . .. . . ... .......... .. ..... . .. . .. .. . . .. . . ... .. . . . . .. . .............. ...... ... . . . . . . . . .... .. .. . . .. . . . .. .. ...
lowQualScore : 5 222 8 77 5555 7 777 888 888 000000 7 3 777777777 77777 22 7 333 77 7 9999999999999999999999999999999999999999 0 222222 000 8 0 5 99999999999999999 2 000000 4 99 4 111111111 4 111 999 4 0 0 1111111111111111 3 4 55555 1 222 0 777777777 00000000 44 3333 0 77 99 0000 7 555 2 2 77777777777777777777777777777777777777777777777777777777777777777777777 22 0 77 0 333 888 0 22 7 0 88888888888888888888888 2 22 77 7 777 22222222222222222222222 0 000 88 8 88888888888888888 7 2222 0 000000000000000 0 2 888888888888888 8 2 7 88 2 222222 3 111 1 7 444444 0 8 99999999 6 00000 99 99 00000000000 1 0 2 0 0 0 99 0 88888 0 0 111111111111111111111111 0 1 2 0 99 444 99 7 3 4 4 7 7 4444444 7 77777777 1 11 44 33333333333 77777777777 00000000000000000000000000000000000000000000000 0 2 00 2 7777 7 6 88 0 888888888888888888888888888 0 88 0 0 222 0000000000 00 00000 3 33 3 00 77 7 4 66 0 4 888 66 7 4 4 4 44 0 99999999999999 000000 000 0 6 8 8 0 0 2 4 0000 88 88 8 0 66 0 0 0 88 00 444
consensus : CTAGTATA--CTATTTAANATTATTC--TGCT-AT---AAAATTGGTT--GATAT-----TATTT-GTGACAAATCCGA-T-G---ATTTGTAA--ATTCGGGCATGT-TCGAATT-AACGTAAACCAT-TA----------TTT-----GG-C-T---GC----------TTTGAA-GAGGGTGCA--CC--AA---TGTATA-TGGGG--GGGGA--CGGGGGAGGTAAAGTAATC----GGTA-GCAACATT-TCAA--AGT--CTACGT-TCAAN--GGG---GTG-CA-C-CT-------------C--TTC-CTGTGTTGATTTTCG--CCAATATCAG--GC-TCCACTGA-------TATAT-----ATCAGTTGTTACA-G--GAGCAAC-GAAGTCAA--A--A-TG-TA-ATAATTTAAATT--A-CAT--C---GAAT-----A--T--CCGCAA--AC-------------CA-ATNTCG---------A-TCA--TNAC-ATTTTTCATCNCCA-CCGCTTTGACAGT-CCATATTTATNCGGGGAAC-ATA-TAA-TAG--AGGTC-A----------GCCT--GCG-TTCGAGGAGGGA---ATTTAT-------TT--------------TTTC-CTGTTATAAAAGTTTGAT-ATTTG---T-TT-G-T-TATA-CTT-ATACAATATCAAGTGGCGGA-TCCAGA--GGG-G-AGGGGGGG-GG------GGGTG-GTCTAAGGGG-TCG-GACCC----CACCTTTC--GTTAAAA-AA------TT-TGCTAAATAAA--T--TCAAAA----TGTAGACA--C--CC-----------TTTC-AAACA-TT-C-C--GGA-TCCG---C-C-CT-GC---AATTT------GTT-G-----T-CGTCTGTGTGGCTTCGCGCATGCTTATAGA-AAATTGTAAAAA--TGCGGAACCATAACTTCTG-CANAGTTC-GGAT-CAAGGGGTATGTTTTTGATNAATTNAT--AACTAGCCAAGCT---AA-TNA--AAAT-AANTG-C-CT--AT--TG-AAT-TT-TCA----TATAGTAG-C--TTGCATTGCACGCACCAA-C-CATCTAT-AATT-AT-ATT--ATGCNACAAGCCGGCTATTATCTATGNAAATGCCGGATAGAAANTTTCAGCTCGTTAATTTAATAGTATNNNNNNNATAGATTCTGTCTGGTCT-G-TGGTGTAAACAAACATAAGGAA--TAC-AAATCAATC-AATGCCTTCCTTGACAATACAGATACCATTTAATTCATTAGGTAGTA-CTG-ANTGTAC-T---GA--TAGCCGG-GTACT-GTA-TTGAAGGA-AAACAAA-ACTTTTTAC----ATTTCAAGCCAAAGA---AAGGTT---TGTT-CAAAATCTTCTTTTTT-TTTAGATG-ATCCGAAAATTAGAGAAAAT---TGGC-TTTG-AAAATATTTATTTG-CG-TTTT-A-TCCGAAGA-TTTTT--TCG-T-TTATTT
Reference ( family-271 ) : CTAGTATA--CTATTTAANATTATTC--TGCT-AT---AAAATTGGTT--GATAT-----TATTT-GTGACAAATCCGA-T-G---ATTTGTAA--ATTCGGGCATGT-TCGAATT-AACGTAAACCAT-TA----------TTT-----GG-C-T---GC----------TTTGAA-GAGGGTGCA--CC--AA---TGTATA-TGGGG--GGGGA--CGGGGGAGGTAAAGTAATC----GGTA-GCAACATT-TCAA--AGT--CTACGT-TCAAN--GGG---GTG-CA-C-CT-------------C--TTC-CTGTGTTGATTTTCG--CCAATATCAG--GC-TCCACTGA-------TATAT-----ATCAGTTGTTACA-G--GAGCAAC-GAAGTCAA--A--A-TG-TA-ATAATTTAAATT--A-CAT--C---GAAT-----A--T--CCGCAA--AC-------------CA-ATNTCG---------A-TCA--TNAC-ATTTTTCATCNCCA-CCGCTTTGACAGT-CCATATTTATNCGGGGAAC-ATA-TAA-TAG--AGGTC-A----------GCCT--GCG-TTCGAGGAGGGA---ATTTAT-------TT--------------TTTC-CTGTTATAAAAGTTTGAT-ATTTG---T-TT-G-T-TATA-CTT-ATACAATATCAAGTGGCGGA-TCCAGA--GGG-G-AGGGGGGG-GG------GGGTG-GTCTAAGGGG-TCG-GACCC----CACCTTTC--GTTAAAA-AA------TT-TGCTAAATAAA--T--TCAAAA----TGTAGACA--C--CC-----------TTTC-AAACA-TT-C-C--GGA-TCCG---C-C-CT-GC---AATTT------GTT-G-----T-CGTCTGTGTGGCTTCGCGCATGCTTATAGA-AAATTGTAAAAA--TGCGGAACCATAACTTCTG-CANAGTTC-GGAT-CAAGGGGTATGTTTTTGATNAATTNAT--AACTAGCCAAGCT---AA-TNA--AAAT-AANTG-C-CT--AT--TG-AAT-TT-TCA----TATAGTAG-C--TTGCATTGCACGCACCAA-C-CATCTAT-AATT-AT-ATT--ATGCNACAAGCCGGCTATTATCTATGNAAATGCCGGATAGAAANTTTCAGCTCGTTAATTTAATAGTATNNNNNNNATAGATTCTGTCTGGTCT-G-TGGTGTAAACAAACATAAGGAA--TAC-AAATCAATC-AATGCCTTCCTTGACAATACAGATACCATTTAATTCATTAGGTAGTA-CTG-ANTGTAC-T---GA--TAGCCGG-GTACT-GTA-TTGAAGGA-AAACAAA-ACTTTTTAC----ATTTCAAGCCAAAGA---AAGGTT---TGTT-CAAAATCTTCTTTTTT-TTTAGATG-ATCCGAAAATTAGAGAAAAT---TGGC-TTTG-AAAATATTTATTTG-CG-TTTT-A-TCCGAAGA-TTTTT--TCG-T-TTATTT
gi|1 : CTA-TATC--TTATTTAAAATTATTTCTTGCT-AT---ATAATTGGTT--GATAT-----TATTT-GTGACAAATCC---T-A---ATTTGTAATTATTCAGGCATGTCTCGAATT-A-CGTAAATAAT-T-----------TTT-----GG-C-T---GC----------TTTGAA-GAGGGTGCA--CCGCAA---TGTATACTGGGGTGGGGGAGCCGGGGGAAGTCAAGTATCC----GGTA-ACAACATT-CCGA--AGT--CTACGTGTCAAT--AGGTT-GTG-CA-C-CT-------------C--TTC-CTGTGTTCATTTTCGGTCCAATATCAGTTGC-TCCACTTA-------TACATGGAACATTAGTTGTTACA-GTTGAGCAAC-GAAGTCAATTA--A-TGCTA-ATAATGTA--TT--T-TTT--TTAAGAAT-----A--TTCCCGCAG--AC-------------TA-ATTTCG---------A-TCA--TCAT-TTATTTCATCTCCAGCTGCTTTGACAGTGCCATATTCATCCGGGGAAC-ATA-TAA-TAACTAGGTC-ACGTCATTCAAGCCT--GTG-CTCGAAGAGAGA---ATTAAT-------TT--------------TCTC-CTGTTATA----TTGGATTATTTG---T-TT-A-T-TATA-CTC-ATAAAGTATCACGTGGGGGAATCCAGAAAGAG-GTAGGGGGGGCGG------GGGTGTGTCTAAGGGGGTCGTGACTC----CACCTTTTCAGTTAAAT-AA------TT-TGCTAAATAAA--T--TCAAA-----TGTAGACA--C--TC-----------TTTC-AAACA-TT-C-T--GGA-TCTG---C-C-CT-GC---AATTT------GTT-G-----T-CGTCTGTGTGACTTCGCGCATGCTTATAGG-ATATTGTTAAAA--TGCGGAACTATTACTTCTG-CATAGTTC-GGATCCAAGGGGTATGTTTTTGATTAATTTTT--AATTAACTAAGCTTGGAA-TTATGAAATAAATTG-T-CT--ATGCTG-AAT-TTATCAGAGTTACATTAGCC--TTGCATTGCAC---CCAA-CGGATCTAT-AATT--T-AT-----------AGTCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGATTTTGTCTGGTTTGG-TGTTGTTAACAAACATAAGGAA--TAC-CAATCAATCAAATGTCTTCCTTGACAATA-AGATACCATTTAATTCATTAGGTAGTATCTGTATTGTAT-T---AA--TAGCTGG-GTGTT-GTA-TTGAAGTA-AAACAAATACTTTTTACGGATGTTTCAAACCAAAGATGGAGGGTT---TGTT-C-AAATCTTTCTTTTT-TTTAAATG-ATCCGAAAATTAGAGAAAAT---TGGC--TTG-AAAATATTTATTTG-TG-TTTT-A-TCCGAAGATTTTTT--TCGTT-TTATTT
gi|10 : A-CTG-ATTGTAC-TACTGAG-TAGCTGAAGTATTTGTA-TTGAATGA-TAACAAA-ACTTT---C----ATTTCAAACCAAAGA---GAGGTT---TGTT-CAAAATC----TTTTT-TTTAAATG-ATCTGAAAATTCGAGAAAATGCATGTC-TTTG-AAAATATTTATTTGCCGTTTTT-A-TCC-AAGA-TTTTT--TCG---TTATTT
gi|11 : AGTA-CTG-ATTGTACCT---AA--TAGCTGG-GTATT-GTA-TTGAAG-A-AAACAAA--CTTT---C----ATTTCAAGCCAAA------AGGTT---TGTT-CAAAATCTTCTTTTTTGTTTAGATGAATCCGAAAATTAGAGAACAA---TGGCTTTTG-AAAATATTTATTTG-CG-TTTTGA-TCCGATGA--TTTT--TCG---TTATTTaatacatttaacatctgtttcctagtcttttttacctcttaatcttatctgacacagatgaagttgatatccttttggaagttct
gi|12 : AGTA-CTG-ATTGTAC-T---AA--TTGCTGG-TTATT-GTA-TTAGAGGATATACAAA-AAACTTTAC----ATTTCAGGCCAAA--------GTTACATCTT-C--AATCTTCTTTTGT-TTTAGAT--ATC--GAAATTAGAGTAAAT---GGGC-TTTG---AATAT--------CG---TT-AGTCCGAAGA-TTTTTCATCG-TATTAataacatttaacatctgtttctatgtctctcccccccccttttattttattctgacacgatgagttgatatccttttggaagttttt
gi|13 : aaAAAATAATG----AGT------TATT-TTCA--AGT--CTATGT-TCAAA--GGGTACGTGGCA-C-AT-----------------TC------TTGATTT-CG--GCAGTGTCAG--GC-TCCACTGA-------TATA--------CAG-TGTTACA----GAGCAAC-AAAGTCAA--A--A-GG-T--TTAACTTGAATTTGA-CAA--C---ACA------A--T--CTGCAAACAC-------------CA---GCCC---------A-TAAATTCAC-ATTTCTCATCACCA-TCGCTaatacattaacattctgtttctagtctctctcccccccccctacttatcttattctgacacagatgaaggattattcctcttttggaattctccc
gi|14 : tcggcctggtttggaagaggatgcaaaggcttcagttcaaaaattaatgtgtatatgcggCTAGTATAAGCTATT-AATGTTAT-C--TGCTTAT---AAAAATGGTT--GATAT-----TATTTTGTGACAAATCCAG-T-A---ATTTGGTA--CTTCGGGCATGT-TCGAATT-AACGTAA--CAT-T-----------TTT-----GGAC-T---GC----------TTT
gi|15 : tgtggggcgtaattaatatgtccgcggcattgcagtgcgttttcgggggtgggtccagtggtatcgccatgtgaaTGAT-ATTTGA--TATT-G-CCTA-A-TTTGATACAA-ATTAAGTGGTGGAAT-----------G-AGGAGGGG-AG------GGC---GTTTA-GGGG-TTG--ACCC----C---CTTA--GTTAAAA-TA------TT-TGGTAAACGAAATT--TCTGAA----TGT-GACATGC--CC-----------TTCCTACACA-TTCC-C--GGA-T-CG---CGT-CT-GCCT-CGTTT------GTT-GGGCTTT-CGTGTATGTG
gi|16 : cctttatagcCTAGTATA--CTATTTAAGATTTATC--TGCT-AT---AAAAT--GTT---ATA------TATTT-GTGACAAATTCCA-T-GTATATTTGTAA--CTTCGGGCATG--TCGAATTAAACGTAGACCATGTA----------TTT-----Gct
gi|17 : atgtgggacgttaataaaatatgtctgcggcatgtgcagtctgcgttcgggggggtcgatggtaatcgccatgtaT-------------C--TTT-CT-TATGGCTATTCGGTCCAATATCAT--ACGTTCACTGA-------TATA--------CAGT-GTTATACA--GAG-AAG-GAAGTAAA--A--AATG-TA-A-AAC----ATT--A-CA---C---GAA------A--T--CCACAA--AA-------------CACATCTCATAGTTATGAA-TCA--TTACCATTTTTTATCACCA--CGTTT---CAGTCCCATATGTATGTGGGGGCC-ATtt
gi|18 : tTTTGTGTGGTTTCGCGCATGCT--TAGA-AA----TAATAA--T---GAA-CAGAACCNNNN-NNNNNNNN-NNNN-NNNNNNNNNNNNNNNNNNNNNNNNNNN--NNNNNNNNNNNNN---NN-NNN--NNNN-ATGTG-CTCT--AT--GG-AAT-TT--------CACAGTA--------TATTGCATGCACCAA-A-TATCTAT-cgtaaaaaaa
gi|19 : AAAGTAATTCATGAGTA-GCATTATT-TCAA---GT--CTATGT-TCAAG--GGG---GTG-AA-C-CTT------------C--TTT-CTATCTTGATTT-CG--CCAAT-------------------------TATAT-----CCCA-TTGTTACA----GAGCAACGGAAGTCAA--A--A-ta
gi|2 : acaaaggtttcagttcaaaaatgtataatgcgg----------TTT-----GG-CCT---GC----------TTTGAAAGAGGGTGCA--C---AA---TGTAAA-TGGGG--AGGG-----GGGGGGGTAGGTTAATC----GGTA-ACAACATT-TCAA--AGT--CTACGT-TCATT--GGG---GTG-CA-C-CTTCTTTCTGTGTTTC--TTT-CTGTGTTCATTT-CG--CCAAT-TCAG---C-TCCACTG----------TAT-----ATCAGTGGTTACA-G---AGCAA--GAAGTCAA--AGAA-TG-TA-A-AATTTAAATT--G-CATTTC----AAT-----AAAT--CCGC-------------------CA-ACATCG---------AATCA--TAA--ATTTTTCATCTCCA-T-GCTTTGACA-T-CCATATTTATT-GGGGAAC-ATA-TAAATAG------C-A----------GCCTTTGC--TTCGAAGAGAAG---AATTAA-------TT--------------TCTC-CTGTTATAA--GTTTGAT-ATTTG---T-TT-A-T--ATA-CTT-A--CAATA-CAAGTGGGGGA-TCCAGA--GG----AGGGGGGG-GG------GGG---GTCTA-GGGG-TCC-GACCCACCCCACCTTTC--ATTAAAA-AAAATAAATT-TGCTAAATACA--TAGTCAAAA----TGTAGACA--C--CC-----------TTTC---ACATTT-C-C--GGATTTCGT--C-C-CT-GC----ATTT------GTT-G-----T-CGTCTGTGTGACTTCGCGCTAGCTTATAGA-AAAAT-TAAAAA--TGC-GAACC-TA--NNNNN-NNNNNNNN-NNNN-NNNNNNNNNNNNNNNNNNNNNNNNNNN--NNNNNNNNNNNNN---NN-NNN--NNNN-NNTTG---CTAAAT--TGAAAT-TT-TCA-----ATAGTA--------CATTGCATGC-CCAA-C-CATCTATAAATT-Aat
gi|20 : GGGGAACGTAA--TAATA----AGTC-GCAGCATG-TCA----GT--CTGCGT-TTTCG--GGG---GTG-Cgtacnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnttaaag
gi|22 : gtGGGG--GGGG----------GGTATAGTAATA----AGTA-ACAATATTATCAT--AGTG-CAACGT-TTGCA--CAG---GTG-CATC-CT-------------C--TTCTCTGTGTTggtgcttgtgagtggtaatctccatgtatcactattaaattacctgc
gi|23 : AGTA-ATG-AATGTAC-T---GA--TAGCTGG-GTACT-GTA-TTGAA-GA-AAATAAA-A--TGTTAC----ATTTCAAGCCAAA
gi|24 : atcaaAGTA-TTT-AATGTAC-T---GA--TAGCCGG-GTACT-GAA-CTGAA-GA-AAACAAA-AC--TTTAC----ATTTCAAGCCA
gi|25 : tcaaAGTA-CTG-AATGTAC-T---GA--TAGCCGG-GTACT-GTA-TCGTAGCA-AATCAAtaa
gi|26 : taatcaAGTA-CTT-AATGAAC-T---GA--TAGCCGG-GCACT-GTA-gcc
gi|3 : aatcaaCTACTATA----ATTGAATAT-AT-C--TGCT-AT---GAA-TTGGTT--AATAT------ATTT-GTGACAAATCGAA-T-G---ATTTGTAA--AT-CAATTATAT--CGATTT-AAC--ACACCAT-TA----------GTC-----GGAC-T---GA----------TTTGAA-GAGGGTGCA--CA--AA---TGTATA-TTAGG--GAA-A--CG-------TAA-GTAATC----GGTA-GC-----T-TC-------------GT-TCAAC--GTG---AAG-GA-CGTT-------------C--TTT-CTATGTTGATTT-CG--CCGATATCAG--GC-TACACTGA-------TGTAT-------CAGT-GTTAGA-G--AA-TAAC-GAAGTCAC--A--A-TG-TATATAATTTAAATT--A-CAT--T---GGATGA---A--T--CCGCAA--AC--------------A-AT-TGA---------A-TCA--CACC-ATTTTTCATTCCCA-CCGCTT---CAGT-CCATATTTTTGTGGAGAACAAAA-TAA--AG--AGATCTA----------G-CT--GCA-TTTGAGGAGGGATTTATTTATGCTATTATT--------------TTTC-CTGTCATAAAAGCTTGAT-AATTGATAT-TT-G-C-TGCATTTT-GTACAAT-TC-AGTGGCGGA-TCCAGA--GGG-G-A--GGNNN-NN------NNNNN-NNNNNNNNNN-NNN-NNNNN----NNNNNNNN--NNNNNNN-NN------NN-NNNNNNNNNNN--N--NNNNNN----NNNNNNNN--N--NN-----------NNNC-ATACA-TC-C-C--TGATTCCG---C-CTCT-GC---A-------------------------CTTTGTGGCTTCGTGCATGCTTA---G-AAATTATAAAAA--AGCGGAA-CATAACTTC-G-CAA--TTC-GGAT-CAA--GGT---TTTTTTATCCATTCAT--AA--GGCCAAGCT---AA-TCA--AAAT-AAA-G-T-TT--AT--Tc
gi|4 : atgtgggggactaatagatatgtcgacgcattacagcatgcgttcagggtgtgttggtttgaggtggataatctccaatccccttgtGTATA--CTGTT--AAATTAT-C--TGGT-AT---AAAA--AGTTA-GATATACATGTATTT-GTGGAAAA-CCGAGT-G---ATTTGCAA--AT-CGGGCATGT--CGAA-----CGTAA--CAT-TATTTGTCGGGTTTTAAAGAGG-G-T---GCACGCCATATGTTTTAA-AAGGTTTCAGTTC--AAACATGT-TA-T----------A--TGGGGAAAATAAAATAATA----AGCA-GCTACATT-TCAAGTAGTAACTACAT-TATAC--GGA---GTG-CA-C-CT-------------T--CTCTCTATATCAATTTTT---CCAATATCAG--GC-TCCACTTACATAATGTATAT-----ATTCG-TGTTACA----GAGAAAT-TAAGTCAA--A--C-TG-TA-A-AATTTAAAAT--ATCAT--T---GCATACGCAA--T--CCGTAA--ACACTTGAATCATGACA-ATAT-------------TCA--TTAC-TTTTTTCATCACCA-CCGCTT---CAGC-C-----TTAT------AA--ATACCGA-TA---AGGT---------------CT--GTGTTTCGGGGAGGGA---ATTTAT-------CTATGCTTATATGGCATTTCTCTGTTATAAAAGTTTG-----TTG---T-TTCGTT-TATA-CCT-ATACAAT-TC--GTGACGGA------G--GGG-G-AGAGGGGG-GGTATTCAAGGTA-TTC-AAGGTG-TCG-GG-------CACC--------TAAAA-AA------TT-C-CT---------T--T---------TGTAGACT--C--CCTTAATTCCCCTTTTC-AAAAA-TT-CTT--GAA-TCCGCACC-C-TT-GTGAAAATCCAAGCAGGAT-G-----T-CGTTTGTTTGGCTTTGCGCATAC-TGTAGA-AActgcatccctgtgtaacactttatacaca
gi|5 : atgttgcagctgcgttcgagggatttatctccatgcatC-A----------GTCT--GCG-TTCTAGGATGAA---ATTTAT-------AT--------------ATCT-TTGTTATAAAAGTTTGA--ACTTC---G-AT-A-T-TTT---TT-TTACAATTT--AGTTGCGGG--CCAGG--GGGTG-AAAAG----------------G-ATCTA---GG-TCG-GACCC------CCTTTC--GCTAAAATAAT-----TT-TGTTAAATAAA--T--GTAAAAAAAGT-TAGACA--C--CCCCCCCCG----TTTC-AAA-A-TT-C-CT-GGA-TCCG---C-C-CT-GC---AATTG------CGC-G-----T-CG--TGTG-GGCTTCGCGCATGCTTA---A-AAAATAT-AAAA--TGCGGAACC-TA---NNNN-NNNNNNNN-NNNN-NNNNNNNNNNNNNNNNNNNNNNNNNNN--NNNNNNNNNNNNN---NN-NNN--NNNT---TTG-C-TT---T--TG-ATA-TT-TC------ATAGTA--C--ATGCATGGCAC-CACCAATC-CATAT-T-ACTTAAT-ATTGGGTGCCATAAGCAGGC---------TGCAAAT--CGGATAGAAAATTTCA-TTCGT---TTTAAtaatattgaag
gi|6 : gtaataaatattatctttaTTT--GCTGAAA-CA------TTATGTTAAAT--------TTAAAA----TGTAGACA--C--TC-----------TT-C-AAACA-GT-C-CT-GGA-TCTGT--C-C-CT-GC---AATTT------GTTTG-----TGCGTCTGTGTGACTCGACGCATGCTTATAGACAAATTGAAAAAAGATGCGGAACCATAACTTTTGTCAGAG--CAGGAT-CAAGG---ATATTTTGGATGAATTAATTAAACTAG---AGCT---AA-TAA--AAAT-AAATATC-CT--ATA-TG-AAA-TT-C------TATAGTAG-CACTTGCAT------CACCAA-C--ATCTA--AATT-AT-ATT--ATGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATAGATTCTGTCTGGT------GGTGTAAAAAAACATAAGGAA--TAC-AAATCAAT--AATGCTTTT----ACAATACA
gi|7 : cA------TT-TG-TAAAT-----T--TCAAAA----TGTAGACA--CTTCT-----------TTCC-AAACA-TT-C-CCTGGA-TCTG---TTC-CTAGC---ATTTTT-----GTT-G-----T-CGTCTGT-TGA--TCGCGCTCG--TATAGA-AA-TTGAAAAAA--TGCGGAACCNNNNNNNNNN-NNNNNNNN-NNNN-NNNNNNNNNNNNNNNNNNNNNNNNNNN--NNNNNNNNNNNNN---NNNTTG--ATAT-A---------------TG-AATCTT-TCA----TA--GTAA----TTG---TGCATGCACCAG-C-CATCTAT-A-TT-ATTATT--ATGTAACATTCTGACTATTATCTATGGAAATGCCGAATAGAAATTTTCAGCTCGTTAATTTAATAGTAT----------GAT------TGATCT-GTTGGTGTAAACAAAC-TAAGGAGATTACAAAATCAATC-AATGCCTT-CTTGACAAAACAGATAaga
gi|8 : tttgctgactacGTATG--CTATTCAAT-TTATCT--TGTT-TTTCCAAAAT--GTTTGGATAT------ATCT-G--ACAAA--CGA-TTG---ATTTGTAA----TCTGGCA-AT-----ACC-GACGTAG--CAT-TA----------TTT-----GG-C-CTTGGC----------TTTGAA-AAGGACGCA--C---GA---TGTATA-TGGGG--GAA----------AGGTACCGTAAGC----AGTAAGTAACA----------------ATGT-TCAAACGGGG---GTG-CA-C-CT-------------TCTTTCTCTATGTTGAATTTCG--C-AATATCAG--GC-TCCAgaa
gi|8 : taagcattgtacctgcgttgggggggggggggggggggtattttcatGGGGAAC-ATA-ACA-TTG------C-A----------GCCT--GCG-TTCAA--AGGAA---ATTaacaaagtaaaatggggaacataacattgcagcctgcgttcaaaggaaattagctacaatgtatactgtaatttttt
gi|9 : taagcattgtacctgcgttgggggggggggggggggggtattttcatgtatgctattcaatttatcttgtttttccaaaatgtttggatatatctgacaaacgattgatttgtaatctggcaataccgacgtagcattatttggccttggctttgaaaaggacgcacgatgtatatgggggaaaggtaccgtaagcagtaagtaacaatgttcaaacgggggtgcaccttctttctctatgttgaatttcgcaatatcaggctccaaacaaagtaaaatAGTA-CT--ATTGTAC-T---AAAGTAGCTGG-GTAAT-GTAATTGAAG----AATCAA-ACTTT--AC----ATTTCAAGCCGAA-----AAGGTT---TGTTTCAA--TCTTCTTTTTG-TTTAGATG-ATCCGAAATTAAGAGTAAA----TGGC-TTTGAAAAATATTTATTTG-CG--TTG-A-TC--GAGA-TTTTT--TCG---TTATTTagctacaatgtatactgtaatttttt
blockSeqs : G AGC T TG TC T TCC ATG TGG ACATGT T T CATGTAT CTT T T AAA AC G ATTTGTCGGGTTTTAAAGAGGGTGCACGCCATATG A GTTC ACA . G AGGGGGGGGG A TCATGA A AT A AAGTAGTAA . ACG TAC G T G TCTTTCTGTGTTTC T A TCGGT G G G TACATAATG TCC TT CA C CG . GAA . TAT T A ATCATTGCATACGCAATCCGTAAACACTTGAATCATGACAATAT AT C CC A TC TGA C GT A C AGAGATCTA C TT GT A TTT CTATGCTTATATGGCA T AAA T T ATATTTGCTGCAT G ATTA T TCCAGAGGGG G GGTATTCAAGGTA N . G ACCCCA C A T AATAAA A G GAAATT C AAAAG TG TT TTAATTCCCCT C T T C T CT T CACC T A GAAAATCCAAGCAGGATG G T C AA ATA GA C A A N T NNNNNN . NNNNNNNN NN NN NNNNNNNNN NNNTTG AAATATCCTATATGAAATTCTATAGTAGCACT T T TG A TCC A A AA T TATGNNNNNNNNNNNNNNNNNNNNN C NN A N NNN NNNNNNNATA TC CTGT A AT A C T C . G T C ACT AG A T A TG T AAACTTTAC GAG ACA T A G A T A TGCA TT AA C TT G G G T CA TA
blockSeqs : G C G GA CT . . TTG AG T . T GAGTG CTT T T AA AC . ATTTGGCCTTGGC . CA . . G ATGGGGAAA A GA . AA . ATAGTG . A . . . . TCT T G TCG A A . GA TAT TG G C C . AA . TT T A ACACGAAATCCACAAAACACATCTCATAGTTATGAA . T C A CC . . GT . . ATAGCA T . A G . GCTATTATT . AAA T T ATATTGCCTAA . ACA G CCAGGGGGTG G NNNNNNN A . N NN T C . T . C ACATAG C A . . CCCCCCG T . . . . T T CG . . CTCGTTTGTTGGGCTT . T . AT GAA . C A A N . NNNNNN . NNNNNNNN NN NN NNNNNNNNN NNNNN NNTTGCTAAATTGAAATTTTCAATAGTA C T TG A AT . C A . TATGTAACATTCTGACTATTATCTA N GC N G TAA . . . . . . . C C . G T . . G . . . GG . ATGTTAC A . . A . . C A A T A . T . . G T . .
blockSeqs : C C C TA C . . T G T . T GATTG AT . T AA . . AGTCGGACTGA . C . . T GAAACG G CG . AG . CAAGT . G . . . . TC T G CG A G . GA TAT T G C G . A . A T A TGACAACACAATCTGCAAACACCAGCCCA . A C T CC . . T . . TAAGGT C . G G . TT . AAA T A TTTCGTTTATA . TC C TCCAGAGG G AGGGC . . G CA N N . . . N NNNN N A . . . N . . . . T . TC . . AATTTGTTTG . T . AA GAA . C A A N . NNNNNN . NNNNNNNN CC CA NNNNNNNNN NNNNN ATGTGCTCTATGGAATTTCACAGTA C G TG A CC . A A . TGGGTGCCATAAGCAGGC G . T . . . G T . . . . . . GC . ACTTTAC . . . A . . C T T T A . . . . . T . .
blockSeqs : G C . AA C . . A A . . . AGTA AT . C GA . . TTTGGACTGC . C . . G GGGGG A AA . AA . AAAGT . T . . . . C . A CG A G . GA T T . T C . A . A T A GCATTTCAATAAATCCGCCAACATCGAA . A C C C . . . . . TTGCA . . G G . AT . A . C TTTATATA . TC C GGGGG A GGGGG . . G C T C . . . C AAAT T N . . . T . . . . . . TC . . ATTTTTGTTG . T . AT TA . C N N T . NNNNNN . NNNNNNNN NN NN NNNNNNNNN AATCA TTGCTTTTGATATTTCATAGTACA C T C A CC . . A . G A . . . . . . G . ACTTTAC . . . . . . . T . T . . . . . . . . .
blockSeqs : G . . T C . . T . . . . AATG T . . . . . . GAAAG A AA . TA . AAGT . G . . . . C . A CG A G . G . T . A T . A . A . . ACATTGGATGAATCCGCAAACAATTGAA . T . A T . . . . . . . . GATATTTT . TT C ATG . G . . . . . T . . . T T T A . . . T . . . . . . TT . . AATTGCGCG . T . T TA . . . . N . GAGCA . GGATA GA AA TAAACTAG NNNNN ATGAATCTTTCATAGTAAT . . . . C . . T A . . . . . . G . ACTTTC
blockSeqs : C CG . AA . AGT . A . . . . C . A CG . . . . . T . . . . C . . . . T T C A . . . C . . . . . . C . . ATTTGTTG . . . . AT . . . . . . ATTC . GGT NN NN AAGGCCA AATAA . G A . . . . . . G . CTTTC
blockSeqs : . AA . . . . . C . . . . T . . TT . . . . . . . . . . . . . . . . . . . C . . A . . . . T A . . . . . . G .
blockSeqs : . CA . . . . . C . . . . . . . T . . . . . .
blockSeqCons : C*** T** GATG***** AT*** ** AA* ** ATTCGGACTGN***************************** C***** AGGGGGGG********* *** CG*** G** TT****** T* G*** ** A** CC* *** TNAGNA***************** AAA T* TTTATATA********* TC** TCCAGGGGGG***** GGGGTN********* G* C** AT****** A**** TC*** ATTTGTTG**************** AATNA****** ATNTGCTATATGAAATTTCATAGTAGC******************** TG CC** A* G* G* ACTTTAC******* G***** T* T* T* ***
originalCons : CTAGTATA--CTATTTAANATTATTC--TGCT-AT---AAAATTGGTT--GATAT-----TATTT-GTGACAAATCCGA-T-G---ATTTGTAA--ATTCGGGCATGT-TCGAATT-AACGTAAACCAT-TA----------TTT-----GG-C-T---GC----------TTTGAA-GAGGGTGCA--CC--AA---TGTATA-TGGGG--GGGGA--CGGGGGAGGTAAAGTAATC----GGTA-GCAACATT-TCAA--AGT--CTACGT-TCAAN--GGG---GTG-CA-C-CT-------------C--TTC-CTGTGTTGATTTTCG--CCAATATCAG--GC-TCCACTGA-------TATAT-----ATCAGTTGTTACA-G--GAGCAAC-GAAGTCAA--A--A-TG-TA-ATAATTTAAATT--A-CAT--C---GAAT-----A--T--CCGCAA--AC-------------CA-ATNTCG---------A-TCA--TNAC-ATTTTTCATCNCCA-CCGCTTTGACAGT-CCATATTTATNCGGGGAAC-ATA-TAA-TAG--AGGTC-A----------GCCT--GCG-TTCGAGGAGGGA---ATTTAT-------TT--------------TTTC-CTGTTATAAAAGTTTGAT-ATTTG---T-TT-G-T-TATA-CTT-ATACAATATCAAGTGGCGGA-TCCAGA--GGG-G-AGGGGGGG-GG------GGGTG-GTCTAAGGGG-TCG-GACCC----CACCTTTC--GTTAAAA-AA------TT-TGCTAAATAAA--T--TCAAAA----TGTAGACA--C--CC-----------TTTC-AAACA-TT-C-C--GGA-TCCG---C-C-CT-GC---AATTT------GTT-G-----T-CGTCTGTGTGGCTTCGCGCATGCTTATAGA-AAATTGTAAAAA--TGCGGAACCATAACTTCTG-CANAGTTC-GGAT-CAAGGGGTATGTTTTTGATNAATTNAT--AACTAGCCAAGCT---AA-TNA--AAAT-AANTG-C-CT--AT--TG-AAT-TT-TCA----TATAGTAG-C--TTGCATTGCACGCACCAA-C-CATCTAT-AATT-AT-ATT--ATGCNACAAGCCGGCTATTATCTATGNAAATGCCGGATAGAAANTTTCAGCTCGTTAATTTAATAGTATNNNNNNNATAGATTCTGTCTGGTCT-G-TGGTGTAAACAAACATAAGGAA--TAC-AAATCAATC-AATGCCTTCCTTGACAATACAGATACCATTTAATTCATTAGGTAGTA-CTG-ANTGTAC-T---GA--TAGCCGG-GTACT-GTA-TTGAAGGA-AAACAAA-ACTTTTTAC----ATTTCAAGCCAAAGA---AAGGTT---TGTT-CAAAATCTTCTTTTTT-TTTAGATG-ATCCGAAAATTAGAGAAAAT---TGGC-TTTG-AAAATATTTATTTG-CG-TTTT-A-TCCGAAGA-TTTTT--TCG-T-TTATTT
finalCons : CTAGTATA--CTATTTAANATTATC---TGCT-AT---AAAAT--GTT--GATAT-----TATTT-GTGACAAATCCGATG-----ATTTGTAAAT---CGGGCATGT--CGAATTAA-CGTAA--CAT-TATTCGGACTGN-----------------------------TTTGAA-GAGGGTGCAC-----AA---TGTATA-TGGGGAGGGGGGG---------GTAAAGTAATC----GGTA-GCAACATT-TCAA--AGT--CTACGT-TCAAN--GGG---GTG-CA-C-CT-------------C--TTC-CTGTGTTGATTTCG---CCAATATCAGG--C-TCCACTGA-------TATATT------CAGT-GTTACAG---GAGCAAC-GAAGTCAA--A--A-TG-TAA--AATTTAAATT--A-CAT--C---GAAT-----A--T--CCGCAA--AC-------------CA-ATNTCG---------A-TCA--TNAC-ATTTTTCATCNCCACC-GCTT---CAGT-CCATATTTATNCGGGGAAC-ATA-TAATNAGNA-----------------GCCT--GCG-TTCGAGGAGGGA---ATTTAT-------TT--------------TTTC-CTGTTATAAAAGTTTGAT-ATTTGTTTATATA---------CTT-ATACAATTC--AGTGGCGGATCCAGGGGGG-----AGGGGGGGGGGGTN---------GTCTAAGGGG-TCGG-ACCC----CACCTTTC--GTTAAAA-AA------TT-TGCTAAATAT------TCAAAA----TGTAGACA--C--CC-----------TTTC-AAACA-TT-C-C--GGA-TCCGTC---C-CT-GCATTTGTTG----------------T-CGTCTGTGTGGCTTCGCGCATGCTTATAGA-AAATTGTAAAAA--TGCGGAACCATAACTTCTG-CANAGTTC-GGAT-CAAGGGGTATGTTTTTGATNAATTNAT--AACTAGCCAAGCTAATNA------AAATATNTGCTATATGAAATTTCATAGTAGC--------------------TGCATTGCATGCACCAACC--ATCTAT-AATTA-T-ATT--ATGCNACAAGCCGGCTATTATCTATGNAAATGCCGGATAGAAANTTTCAGCTCGTTAATTTAATAGTATNNNNNNNATAGATTCTGTCTGGTCT-G-TGGTGTAAACAAACATAAGGAA--TAC-AAATCAATC-AATGCCTTCCTTGACAATACAGATACCATTTAATTCATTAGGTAGTA-CTG-ANTGTAC-T---GA--TAGCCGG-GTACT-GTA-TTGAAG-A-AAACAAAACTTTAC-------ATTTCAAGCCAAAG-----AGGTT---TGTT-CAAAATCTTCTTTTTT-TTTAGATG-ATCCGAAAATTAGAGAAAAT---TGGCT-TTG-AAAATATTTATTTG-CGT-TTT-A-TCCGAAGAT-TTTT--TCG---TTATTT
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|21 ): ATGTGGGGGACGTAAATAAAATAAGTCGCGGCATTGCAGTCTCCCTGCGTTCGGGGGTGGGTGAGTGGGTAATCTCCATGTATACTATTAAATTTATCCT
Alignments
lowQualScore : 111 1 111 111 111111 111 222222 111111111 2222 111111 11111 555555555555555555555555 666666666666666666666666666 1 3333333333333333 111111 222222222 111 22222222222222222 1111 11 22222222 44444444 3333 111 88888888888888888888888888888888888888888888888888888888888888888888888 111 222 1 22 66666666666666666666666 111 66666666666666666666666 222222222222 1 333333333 4444444444444444444444 111111 111 111111 4444444444 44444444444 11 1 11 3333333333333 1111111111111 11111111111111111 11111111 11111111111 222222222222222222 1 4444444444444444 1 1111 111 333333333333333333333333333 111 5555555555 11 33333 11 1 22 11 11 1111 2222222 3333333333 111 1 2222 11 11 111
lowQualScore : 2 000 3 22 6 888 6 111 444444 666 444444 6 7 666666666 6 3333 6 6 6 99 888888 22222 6 7 888 222222222222222222222222 77 1 6 77 888888888888888888888888888 5 1 55 2 9999999999999999 6 333333 4 22 4 111111111 4 777 333 4 5 44444444444444444 3333 5 5 5 5 33 5 888 5 00000000 77 11111111 5 5 4444 3 88 77 8888 6 555 3 3 55555555555555555555555555555555555555555555555555555555555555555555555 99 1 77 1 111 888 6 00 6 8 77777777777777777777777 3 99 77 3 111 33333333333333333333333 8 777 6 88 888888888888 6 6 6 6 3 1 000000000 6 6 0 3333333333333333333333 6 66 0 999999 3 111 0 5 999999 5 4 5555555555 2 1 5 66 66 00000000000 2 5 0 5 5 5 66 0 5 22 66 2222222222222 5 77 3333333333333 5 1 0 9 5 66 555 77 0 6 33333333333333333 5 22222222 0 11 11 00000000000 111111111111111111 3 2 3 3 6 6 99 1111111111111111 5 3 2222 77 666 333333333333333333333333333 1 99 1 8 222 5555555555 11 66666 7 88 3 00 88 6 4 55 1 4 777 00 0 4 4 4 5 5 5 5 5 1111 1111111 5555555555 444 8 0 0 3 8 8 3 1 0000 0 8 88 0 8 88 8 8 5 88 11 111
lowQualScore : . ... . .. . ... . ... ...... ... ...... . . ......... . .... . . . .. ...... ..... . . ... ........................ .. . . .. ........................... . . .. . ................ . ...... . .. . ......... . ... ... . . ................. .... . . . . .. . ... . ........ .. ........ . . .... . .. .. .... . ... . . ....................................................................... .. . .. . ... ... . .. . . ....................... . .. .. . ... ....................... . ... . .. ............ . . . . . . ......... . . . ...................... . .. . ...... . ... . . ...... . . .......... . . . .. .. ........... . . . . . . .. . . .. .. ............. . .. ............. . . . . . .. ... .. . . ................. . ........ . .. .. ........... .................. . . . . . . .. ................ . . .... .. ... ........................... . .. . . ... .......... .. ..... . .. . .. .. . . .. . . ... .. . . . . . . . . . .... ....... .......... ... . . . . . . . . .... . . .. . . .. . . . .. .. ...
lowQualScore : 5 222 8 77 7 333 7 777 555555 888 000000 7 3 777777777 7 3333 7 7 7 22 555555 55555 7 3 888 666666666666666666666666 99 0 7 77 555555555555555555555555555 7 4 00 9 9999999999999999 2 000000 4 99 4 111111111 4 111 999 4 0 55555555555555555 9999 4 0 0 0 88 1 222 0 77777777 11 11111111 7 7 4444 0 77 99 0000 7 333 2 2 77777777777777777777777777777777777777777777777777777777777777777777777 22 0 77 0 333 000 0 22 7 0 22222222222222222222222 7 22 77 7 777 22222222222222222222222 0 000 7 33 222222222222 7 7 7 7 3 0 555555555 7 7 2 5555555555555555555555 7 88 2 222222 3 111 1 7 444444 0 8 2222222222 8 4 0 99 99 00000000000 1 0 2 0 0 0 99 0 0 00 99 5555555555555 0 22 8888888888888 0 9 1 4 0 99 444 99 7 4 00000000000000000 7 77777777 1 11 44 33333333333 333333333333333333 3 5 2 3 7 7 22 3333333333333333 0 2 7777 55 888 888888888888888888888888888 0 88 0 0 222 0000000000 00 00000 3 33 3 00 77 7 4 66 0 4 888 66 7 4 4 4 0 0 0 0 0 6666 4444444 0000000000 000 0 6 8 2 0 0 2 4 0000 8 0 88 8 0 66 0 0 0 88 00 888
consensus : CTAGTATA--CTATTTAANATT-ATCT---GCT-AT---AAAA-T--G-TT--GATAT-----TATTT-GTGACAAATCCGA-T-G---ATTT-GTAA--A-T-CGGGCA-TG-TC--GAATT-AACGTAA--C--AT-TATT---CGG----------------NC------T--GCTTTG-AA-GAGGGTGCA------------C---AAA--------TGT-ATA-TGGGGAGGGGGAG---------G--TAAAGTAATC----GGT-AGCAACATT-TCAA--AGT--CTACGT-TCAA--NGGG---GTG-CA-C-C-T-------------CTT--C-CTGTGTTG-AT-TT-CG--CCAATATCAG--GC-TCCAC--------TG-ATATAT------TCAGT-G-TTACA----GAGCAAC-GAAGTCAA--A--A-TG-TA-A-AATTTAAATT--A-CAT--C---GAAT-----A--T--CCGCAA--AC-------------CA-ATNTCG---------A-TCA--TNAC-ATTTTTCATCNCCA-CCGCTTTGACAGT-CCATATTTATNCGGGGAAC-ATA-TAATNA---------G---C------AGCCT--GCG-TTCGAGGAGGGA---ATTTAT-------TT--------------TTTC-CTGTTATAAAAGTTTGAT-ATTT-G---TTTA-T-A-TA-CTT-ATACAA-T-TCA-GTGGCGGA-TCCAG---GGGG-GAGG-GGGGG--GG-------GGT--GTCTAAGGGG-TCG-GACCC----CACCTTTC--GTTAAAA-AA------TT-TGCTAAATAAA--T----TCAAAATG-TAGACA--C--CC-----------TTTC-AAACA-TT-C-C--GGA-TC-CGT-C--CCT-------------GC-A-TTT--GT-T-G-----T-CGTCTGTGTGGCTTCGCGCATGCTTATAGA-AAATTGTAAAAA--TGCGGAACCATAACTTCTG-CANAGTTC-GGAT-CAAGGGGTATGTTTTTGATNAATTNAT--AACTAGCCAAGCT---AATNA--AAATA---TNTGCTATA-TGAA-ATT-TC--ATAG------TAGC--TGCATTGCACGCACCAA-C-CATCTAT-AATT-A-TATT--ATGCNACAAGCCGGCTATTATCTATGNAAATGCCGGATAGAAANTTTCAGCTCGTTAATTTAATAGTATNNNNNNNATAGATTCTGTCTGGTCT-G-TGGTGTAAACAAACATAAGGAA--TAC-AAATCAATC-AATGCCTTCCTTGACAATACAGATACCATTTAATTCATTAGGTAGTA-CTG-ANTGTAC-T---GA--TAGCCGG-GTACT-GTA-TT-GAA-G-AAA-A-CAAA-A--CTTT------ACATTTCAAGCCAAAGA-----G--GTT---TGTT-CAAAATCTTCTTTTTT-TTTAGATGA-TCCGAAAATTAGAGAAAAT---TGGCTTT-G-AAAATATTTATTTG-CG-TTTT-A-TCCGAAGA-TTTTT--TCG--TTATTT
Reference ( family-271 ) : CTAGTATA--CTATTTAANATT-ATCT---GCT-AT---AAAA-T--G-TT--GATAT-----TATTT-GTGACAAATCCGA-T-G---ATTT-GTAA--A-T-CGGGCA-TG-TC--GAATT-AACGTAA--C--AT-TATT---CGG----------------AC------T--GNTTTG-AA-GAGGGTGCA------------C---AA---------TGT-ATA-TGGGGAGGGGGGG---------G--TAAAGTAATC----GGT-AGCAACATT-TCAA--AGT--CTACGT-TCAA--NGGG---GTG-CA-C-C-T-------------CTT--C-CTGTGTTG-AT-TT-CG--CCAATATCAG--GC-TCCAC--------TG-ATATAT------TCAGT-G-TTACA-G--GAGCAAC-GAAGTCAA--A--A-TG-TA-A-AATTTAAATT--A-CAT--C---GAAT-----A--T--CCGCAA--AC-------------CA-ATNTCG---------A-TCA--TNAC-ATTTTTCATCNCCA-CCGCTT---CAGT-CCATATTTATNCGGGGAAC-ATA-TAATNA---------G---N------AGCCT--GCG-TTCGAGGAGGGA---ATTTAT-------TT--------------TTTC-CTGTTATAAAAGTTTGAT-ATTT-G---TTTA-T-A-TA-CTT-ATACAA-T-TCA-GTGGCGGA-TCCAG---GGGG-GAGG-GGGGG--GG-------GGTN-GTCTAAGGGG-TCG-GACCC----CACCTTTC--GTTAAAA-AA------TT-TGCTAAATA----T----TCAAAATG-TAGACA--C--CC-----------TTTC-AAACA-TT-C-C--GGA-TC-CGT-C--CCT-------------GC-A-TTT--GT-T-G-----T-CGTCTGTGTGGCTTCGCGCATGCTTATAGA-AAATTGTAAAAA--TGCGGAACCATAACTTCTG-CANAGTTC-GGAT-CAAGGGGTATGTTTTTGATNAATTNAT--AACTAGCCAAGCT---AATNA--AAATA---TNTGCTATA-TGAA-ATT-TC--ATAG------TAGC--TGCATTGCATGCACCAA-C-CATCTAT-AATT-A-TATT--ATGCNACAAGCCGGCTATTATCTATGNAAATGCCGGATAGAAANTTTCAGCTCGTTAATTTAATAGTATNNNNNNNATAGATTCTGTCTGGTCT-G-TGGTGTAAACAAACATAAGGAA--TAC-AAATCAATC-AATGCCTTCCTTGACAATACAGATACCATTTAATTCATTAGGTAGTA-CTG-ANTGTAC-T---GA--TAGCCGG-GTACT-GTA-TT-GAA-G-AAA-A-CAAA-A--CTTT------ACATTTCAAGCCAAAGA-----G--GTT---TGTT-CAAAATCTTCTTTTTT-TTTAGATGA-TCCGAAAATTAGAGAAAAT---TGGCTTT-G-AAAATATTTATTTG-CG-TTTT-A-TCCGAAGA-TTTTT--TCG--TTATTT
gi|1 : CTA-TATC--TTATTTAAAATT-ATTTCTTGCT-AT---ATAA-TTGG-TT--GATAT-----TATTT-GTGACAAATCC---T-A---ATTT-GTAATTA-TTCAGGCA-TG-TCTCGAATT-A-CGTAA--ATAAT-T-TT---TGG-----------------C------T--GCTTTG-AA-GAGGGTGCA------------CCGCAA---------TGT-ATACTGGGGTGGGGGAGCCGGGGGAAG--TCAAGTATCC----GGT-AACAACATT-CCGA--AGT--CTACGTGTCAA--TAGGTT-GTG-CA-C-C-T-------------CTT--C-CTGTGTTC-AT-TTTCGGTCCAATATCAGTTGC-TCCAC--------TT-ATACATGGAACATTAGTTG-TTACA-GTTGAGCAAC-GAAGTCAATTA--A-TGCTA-ATAATGTA--TT--T-TTT--TTAAGAAT-----A--TTCCCGCAG--AC-------------TA-ATTTCG---------A-TCA--TCAT-TTATTTCATCTCCAGCTGCTTTGACAGTGCCATATTCATCCGGGGAAC-ATA-TAATAACTAGGTCACG---TCATTCAAGCCT--GTG-CTCGAAGAGAGA---ATTAAT-------TT--------------TCTC-CTGTTATA----TTGGATTATTT-G---TTTA-TTA-TA-CTC-ATAAAG-TATCACGTGGGGGAATCCAGAAAGAGG-TAGG-GGGGGCGGG-------GGTGTGTCTAAGGGGGTCGTGACTC----CACCTTTTCAGTTAAAT-AA------TT-TGCTAAATAAA--T----TCAAA-TG-TAGACA--C--TC-----------TTTC-AAACA-TT-C-T--GGA-TC-TG--C--CCT-------------GCAA-TTT--GT-T-G-----T-CGTCTGTGTGACTTCGCGCATGCTTATAGG-ATATTGTTAAAA--TGCGGAACTATTACTTCTG-CATAGTTC-GGATCCAAGGGGTATGTTTTTGATTAATTTTT--AATTAACTAAGCTTGGAATTATGAAATAAATTGT-CTATGCTGAA-TTTATC--AGAGTTACATTAGCCTTGCATTGCAC---CCAA-CGGATCTAT-AATT---TAT-----------AGTCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGATTTTGTCTGGTTTGG-TGTTGTTAACAAACATAAGGAA--TAC-CAATCAATCAAATGTCTTCCTTGACAATA-AGATACCATTTAATTCATTAGGTAGTATCTGTATTGTAT-T---AA--TAGCTGG-GTGTT-GTA-TT-GAA-GTAAA-A-CAAATA--CTTTTTACGGATGTTTCAAACCAAAGATGGAGG--GTT---TGTT-C-AAATCTTTCTTTTT-TTTAAATGA-TCCGAAAATTAGAGAAAAT---TGGC-TT-G-AAAATATTTATTTG-TG-TTTT-A-TCCGAAGATTTTTT--TCGTTTTATTT
gi|10 : A-CTG-ATTGTAC-TACTGAG-TAGCTGAAGTATTTGTA-TT-GAATG-ATA-A-CAAA-A--CTTT-------CATTTCAAACCAAAGA-----GAGGTT---TGTT-CAAAATCTT----TTT-TTTAAATGA-TCTGAAAATTCGAGAAAATGCATGTCTTT-G-AAAATATTTATTTGCCGTTTTT-A-TCC-AAGA-TTTTT--TCG--TTATTT
gi|11 : AGTA-CTG-ATTGTACCT---AA--TAGCTGG-GTATT-GTA-TT-GAA-G-AAA-A-CAAA----CTTT-------CATTTCAAGCCAAA-A-----G--GTT---TGTT-CAAAATCTTCTTTTTTGTTTAGATGAATCCGAAAATTAGAGAACAA---TGGCTTTTG-AAAATATTTATTTG-CG-TTTTGA-TCCGATGA--TTTT--TCG--TTATTTaatacatttaacatctgtttcctagtcttttttacctcttaatcttatctgacacagatgaagttgatatccttttggaagttct
gi|12 : AGTA-CTG-ATTGTAC-T---AA--TTGCTGG-TTATT-GTA-TTAGAG-G-ATATA-CAAA-AAACTTT------ACATTTCAGGCCAAA----------GTTACATCTT-C--AATCTTCTTTTGT-TTTAGAT-A-TC--GAAATTAGAGTAAAT---GGGCTTT-G---AATAT--------CG---TT-AGTCCGAAGA-TTTTTCATCG---TATTataacatttaacatctgtttctatgtctctcccccccccttttattttattctgacacgatgagttgatatccttttggaagttttt
gi|13 : aaT---CGG----------------CC------T--GGTTTGGAA-GAGGATGCAAAGGCTTCAGTTC---AAAAATTAATGTGT-ATA-TGCGGA---------------------AAATAATG----AGT------TATT-TTCA--AGT--CTATGT-TCAA--AGGGTACGTGGCA-C-A-T---------------T--C------TTG-AT-TT-CG--GCAGTGTCAG--GC-TCCAC--------TG-ATATA--------CAGT-G-TTACA----GAGCAAC-AAAGTCAA--A--A-GG-TT-T-AACTTGAATTTGA-CAA--C---ACA------A--T--CTGCAAACAC-------------CA---GCCC---------A-TAAATTCAC-ATTTCTCATCACCA-TCGCTaaatacattaacattctgtttctagtctctctcccccccccctacttatcttattctgacacagatgaaggattattcctcttttggaattctccc
gi|14 : CTAGTATAAGCTATT-AATGTT-ATCT---GCTTAT---AAAAAT--GGTT--GATAT-----TATTTTGTGACAAATCCAG-T-A---ATTTGGTAC--T-T-CGGGCA-TGTTC--GAATT-AACGTAA--C--AT-T-TT---TGG----------------AC------T--GCTTT
gi|15 : tgtggggcgtaattaatatgtccgcggcattgcagtgcgttttcgggggtgggtccagtggtatcgccatgtgaaTTTGAT-ATT--G---CCTA------A-TTTGATACAAAT-TAA-GTGGTGGAAT------------GAGG-AGGGG--AG-------GG-C-GTTTA-GGGG-TTG--ACCC----C---CTTA--GTTAAAA-TA------TT-TGGTAAACGAAATT----TCTGAATG-T-GACATGC--CC-----------TTCCTACACA-TTCC-C--GGA-TCGCGT-CTGCCT--------------C-G-TTT--GT-T-GGGCTTT-CGTGTATGTG
gi|16 : cctttatagctgataCTAGTATA--CTATTTAAGATTTATCT---GCT-AT---AAAA-T--G-TT---ATA------TATTT-GTGACAAATTCCA-T-GTATATTT-GTAA--CTT-CGGGCA-TG-TC--GAATTAAACGTAGACC--ATGTATT---TGct
gi|17 : atgtgggacgttaataaaatatgtctgcggcatgtgcagtctgcgttcgggggggtcgatggtaatcgccatgta-T-------------CTT--T-CT-TATGG-CTATT-CGGTCCAATATCAT--ACGTTCAC--------TG-ATATA--------CAGT-G-TTATACA--GAG-AAG-GAAGTAAA--A--AATG-TA-A-AAC----ATT--A-CA---C---GAA------A--T--CCACAA--AA-------------CACATCTCATAGTTATGAA-TCA--TTACCATTTTTTATCACCA--CGTTT---CAGTCCCATATGTATGTGGGGGCC-ATtt
gi|18 : tTTTGTGTGGTTTCGCGCATGCTTA--GA-AA----TAATAA--TG---AAC-AGAACCNNNN-NNNNNNNN-NNNN-NNNNNNNNNNNNNNNNNNNNNNNNNNN--NNNNNNNNNNNNN---NNNNN--NNNNA---TGTGCTCTA-TGGA-ATT-TC--ACAG------TA------TATTGCATGCACCAA-A-TATCTAT-cgtaaaaaaa
gi|19 : ---AA---------TGT-ATAATGCGGA---------------------AAGTAATTCATGAGT-AGCATTATT-TCAA---GT--CTATGT-TCAA--GGGG---GTG-AA-C-CTT-------------CTT--T-CTATCTTG-AT-TT-CG--CCAAT---------------------------TATATC-----CCATT-G-TTACA----GAGCAACGGAAGTCAA--A--A-ta
gi|2 : acaaaggtttcagttcaaaTT---TGG----------------CC------T--GCTTTG-AAAGAGGGTGCA------------C---AA---------TGT-AAA-TGGGGAGGGGGGG---------GGGTAGGTTAATC----GGT-AACAACATT-TCAA--AGT--CTACGT-TCAT--TGGG---GTG-CA-C-C-TTCTTTCTGTGTTTCTT--T-CTGTGTTC-AT-TT-CG--CCAAT-TCAG---C-TCCAC--------TG--TATAT-------CAGT-GGTTACA-G---AGCAA--GAAGTCAA--AGAA-TG-TA-A-AATTTAAATT--G-CATTTC----AAT-----AAAT--CCGC-------------------CA-ACATCG---------AATCA--TAA--ATTTTTCATCTCCA-T-GCTTTGACA-T-CCATATTTATT-GGGGAAC-ATA-TAAATA---------G---C------AGCCTTTGC--TTCGAAGAGAAG---AATTAA-------TT--------------TCTC-CTGTTATAA--GTTTGAT-ATTT-G---TTTA-T-A-TA-CTT-A--CAA-T-ACAAGTGGGGGA-TCCAG---AGGA-GGGG-GGGGG--GG-------GGT----CTA-GGGG-TCC-GACCCACCCCACCTTTC--ATTAAAA-AAAATAAATT-TGCTAAATA----CATAGTCAAAATG-TAGACA--C--CC-----------TTTC---ACATTT-C-C--GGATTT-CGT-C--CCT-------------GC-A-TTT--GT-T-G-----T-CGTCTGTGTGACTTCGCGCTAGCTTATAGA-AAAAT-TAAAAA--TGC-GAACC-TA--NNNNN-NNNNNNNN-NNNN-NNNNNNNNNNNNNNNNNNNNNNNNNNN--NNNNNNNNNNNNN---NNNNN--NNNNN---NTTGCTAAATTGAA-ATT-TTCAATAG------TA------CATTGCATGC-CCAA-C-CATCTATAAATT-A-at
gi|20 : GGGGAAC---------G--TAA--TAATA----AGT-CGCAGCATG-TCA----GT--CTGCGT-TTTC--GGGG---GTG-Cgtacnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnttaaag
gi|22 : gtGGGGGGGGG---------G--TATAGTAATA----AGT-AACAATATTATCAT--AGTG-CAACGT-TTGC--ACAG---GTG-CATC-C-T-------------CTT--CTCTGTGTTggtgcttgtgagtggtaatctccatgtatcactattaaattacctgc
gi|23 : AGTA-ATG-AATGTAC-T---GA--TAGCTGG-GTACT-GTA-TT-GAA-G-AAA-A-TAAA-A--TGTT------ACATTTCAAGCCAAA
gi|24 : atcaaAGTA-TTT-AATGTAC-T---GA--TAGCCGG-GTACT-GAA-CT-GAA-G-AAA-A-CAAA-A--CTTT------ACATTTCAAGCCA
gi|25 : tcaaAGTA-CTG-AATGTAC-T---GA--TAGCCGG-GTACT-GTA-TC-GTA-G-CAA-ATCAAtaa
gi|26 : taatcaAGTA-CTT-AATGAAC-T---GA--TAGCCGG-GCACT-GTA-gcc
gi|3 : aatcaaCTACTATA----ATTGAATAT--ATCT---GCT-AT---GAAT-T--GGTT--AATAT------ATTT-GTGACAAATCGAA-T-G---ATTT-GTAA--A-T-CAATTA-TA-TC--GATTT-AACACAC--C--AT-TAGT---CGG----------------AC------T--GATTTG-AA-GAGGGTGCA------------C---AAA--------TGT-ATA-TT---AGGGAAAC---------G--TAA-GTAATC----GGT-AGC-----T-TC-------------GT-TCAA--CGTG---AAG-GA-CGT-T-------------CTT--T-CTATGTTG-AT-TT-CG--CCGATATCAG--GC-TACAC--------TG-ATGTA-------TCAGT-G-TTAGA----GAATAAC-GAAGTCAC--A--A-TG-TATATAATTTAAATT--A-CAT--T---GGATGA---A--T--CCGCAA--A--------------CA-AT-TGA---------A-TCA--CACC-ATTTTTCATTCCCA-CCGCTT---CAGT-CCATATTTTTGTGGAGAACAAAA-TAAAGA---------GATCT------AG-CT--GCA-TTTGAGGAGGGATTTATTTATGCTATTATT--------------TTTC-CTGTCATAAAAGCTTGAT-AATT-GATATTTGCT-G-CATTTT-GTACAA-T-TCA-GTGGCGGA-TCCAG---AGGG-GAGGNNNNNN--NN-------NNNN-NNNNNNNNNN-NNN-NNNNN----NNNNNNNN--NNNNNNN-NN------NN-NNNNNNNNN----N----NNNNNNNN-NNNNNN--N--NN-----------NNNC-ATACA-TC-C-C--TGATTC-CGC-C--TCT-------------GC-A-CTT---------------------TGTGGCTTCGTGCATGCTTA---G-AAATTATAAAAA--AGCGGAA-CATAACTTC-G-CAA--TTC-GGAT-CAA--GGT---TTTTTTATCCATTCAT--AA--GGCCAAGCT---AATCA--AAATA---c
gi|4 : atgtgggggactaatagatatgtcgacgcattacagcatgcgttcagggtgtgttggtttgaggtggataatctccaatccccttgtGTATA--CTGTT--AAATT-ATCT---GGT-AT---AAAA-A--G-TTA-GATATACATGTATTT-GTGGAAAA-CCGAGT-G---ATTT-GCAA--A-T-CGGGCA-TG-TC--GAA-----CGTAA--C--AT-TATTTGTCGGGTTTTAAAGAGGGTGCACGCCATAT--GTTTTA-AA--AGGTTTCAGTT---------C---AAACA------TGTTATA-TGGGGAAAA----------------TAAAATAATA----AGC-AGCTACATT-TCAAGTAGTAACTACAT-TATA--CGGA---GTG-CA-C-C-T-------------TCT--CTCTATATCA-AT-TT-TT--CCAATATCAG--GC-TCCACTTACATAATGTATATAT------TC-GT-G-TTACA----GAGAAAT-TAAGTCAA--A--C-TG-TA-A-AATTTAAAAT--ATCAT--T---GCATACGCAA--T--CCGTAA--ACACTTGAATCATGACA-ATAT-------------TCA--TTAC-TTTTTTCATCACCA-CCGCTT---CAGC-C-----TTAT------AA--ATACCGATAA---------G-----------GTCT--GTGTTTCGGGGAGGGA---ATTTAT-------CTATGCTTATATGGCATTTCTCTGTTATAAAAGTTTGTT-GTTTCG---TT---T-A-TA-CCT-ATACAA-T-TC--GTGACGGA---------GGGG-GAGA-GGGGG--GGTATTCAAGGTA-TTC-AAGGTG-TCG-GG-------CACC--------TAAAA-AA------TT-C-CT---------T----T-----TG-TAGACT--C--CCTTAATTCCCCTTTTC-AAAAA-TT-CTT--GAA-TC-CGCAC--CCTTGTGAAAATCCAAGC-A---G--GA-T-G-----T-CGTTTGTTTGGCTTTGCGCATAC-TGTAGA-AAaagtttattctgcatccctgtgtaacactttatacaca
gi|5 : atgttgcagctgcgttcgagggatttatctccatgcat------AGTCT--GCG-TTCTAGGATGAA---ATTTAT-------AT--------------ATCT-TTGTTATAAAAGTTTGAA-CTTC-G------A-T-ATTT-TTT-TTACAA-T-TTA-GTTGCGGG--CCAG---GGGGTGAAA-AGG------------------ATCTA---GG-TCG-GACCC------CCTTTC--GCTAAAATAAT-----TT-TGTTAAATAAATGT----AAAAAAAGTTAGACA--C--CCCCCCCCG----TTTC-AAA-A-TT-C-CT-GGA-TC-CG--C--CCT-------------GC-A-ATT--GCGC-G-----T-CG--TGTG-GGCTTCGCGCATGCTTA---A-AAAATAT-AAAA--TGCGGAACC-TA-----NN-NNNNNNNN-NNNN-NNNNNNNNNNNNNNNNNNNNNNNNNNN--NNNNNNNNNNNNN---NNNNN--NNNNN---TTTGCT-TT-TGAT-ATT-TC--ATAG------TACA--TGCATGGCAC-CACCAATC-CATAT-T-ACTTAA-TATTGGGTGCCATAAGCAGGC---------TGCAAAT--CGGATAGAAAATTTCA-TTCGT---TTTAAtaatattgaag
gi|6 : gtaataaatattatctttacTTT--GCTGAAA-CA------TTATGTTAAAT----------TTAAAATG-TAGACA--C--TC-----------TT-C-AAACA-GT-C-CT-GGA-TC-TGT-C--CCT-------------GC-AATTT--GT-TTG-----TGCGTCTGTGTGACTCGACGCATGCTTATAGACAAATTGAAAAAAGATGCGGAACCATAACTTTTGTCAGAG--CAGGAT-CAAGG---ATATTTTGGATGAATTAATTAAACTAG---AGCT---AATAA--AAATAAA-TATCCTATA-TGAA-ATT-CT--ATAG------TAGC---AC-TTGCAT-CACCAA-C--ATCTA--AATT-A-TATT--ATGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATAGATTCTGTCTGGT------GGTGTAAAAAAACATAAGGAA--TAC-AAATCAAT--AATGCTTTT----ACAATACA
gi|7 : cA------TT-TG-TAAAT-----T----TCAAAATG-TAGACA--CTTCT-----------TTCC-AAACA-TT-C-CCTGGA-TC-TGT-T--CCTA------------GC-A-TTTTTGT-T-G-----T-CGTCTGT-TGA--TCGCGCTCG--TATAGA-AA-TTGAAAAAA--TGCGGAACCNNNNNNNNNN-NNNNNNNN-NNNN-NNNNNNNNNNNNNNNNNNNNNNNNNNN--NNNNNNNNNNNNN---NNNT-------------TGATATA-TGAATCTT-TC--ATAG------TAAT--TG---TGCATGCACCAG-C-CATCTAT--ATT-ATTATT--ATGTAACATTCTGACTATTATCTATGGAAATGCCGAATAGAAATTTTCAGCTCGTTAATTTAATAGTAT----------GAT------TGATCT-GTTGGTGTAAACAAAC-TAAGGAGATTACAAAATCAATC-AATGCCTT-CTTGACAAAACAGATAaga
gi|8 : tttgctgactacGTATG--CTATTCAAT-TT-ATCTT--GTT-TTTCCAAAA-T--G-TTTGGATAT------ATCT-G--ACAAA--CGA-TTG---ATTT-GTAA----T-CTGGCAATA-CC--GA------CGTAG--C--AT-TATT---TGG----------------CC------TTGGCTTTG-AA-AAGGACGCA------------C---GA---------TGT-ATA-TGG---GGGAAAG---------G--TACCGTAAGC----AGTAAGTAACA----------------ATGT-TCAAACGGGG---GTG-CA-C-CTT-------------CTTTCT-CTATGTTGAAT-TT-CG---CAATATCAG--GC-TCCAgaa
gi|8 : taagcattgtacctgcgttgggggggggggggggggggtattttcatGGGGAAC-ATA-ACATT----------G---C------AGCCT--GCG-TTCAA--AGGAA---ATTaacaaagtaaaatggggaacataacattgcagcctgcgttcaaaggaaattagctacaatgtatactgtaatttttt
gi|9 : taagcattgtacctgcgttgggggggggggggggggggtattttcatgtatgctattcaatttatcttgtttttccaaaatgtttggatatatctgacaaacgattgatttgtaatctggcaataccgacgtagcattatttggccttggctttgaaaaggacgcacgatgtatatgggggaaaggtaccgtaagcagtaagtaacaatgttcaaacgggggtgcaccttctttctctatgttgaatttcgcaatatcaggctccaaacaaagtaaaatAGTA-CT--ATTGTAC-T---AAAGTAGCTGG-GTAAT-GTAATT-GAA-G-AA----TCAA-A--CTTT------ACATTTCAAGCCGAAAA-----G--GTT---TGTTTCAA--TCTTCTTTTTG-TTTAGATGA-TCCGAAATTAAGAGTAAA----TGGCTTT-GAAAAATATTTATTTG-CG--TTG-A-TC--GAGA-TTTTT--TCG--TTATTTagctacaatgtatactgtaatttttt
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|21 ): ATGTGGGGGACGTAAATAAAATAAGTCGCGGCATTGCAGTCTCCCTGCGTTCGGGGGTGGGTGAGTGGGTAATCTCCATGTATACTATTAAATTTATCCT