lowQualScore : 1111111111111111111111111111111111111111111111111 111111111111111111111111111111111111111111111111111 222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222 111111111111111111 11111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 1 2 333333 11 1111 33 44444444 1111 222222 22222 1 1 111 0000000000000000000000000000000000000000000000000 11 33333 222 444444444444 1 2222222222 111 111111111111111111111111111111111111111111111111111 11 11 1 111 44 1 11 1 2 2 3333333 2 1 1 444444 1 444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444 1 22222222 1 11 1111111 3 444444444444444 222222222222222222 3333333333 1111111111 1 3333333333 111 88888888888888888888888888888888888888888888888888888888888888888888888888888 1 3 111 1 33 2 1
lowQualScore : 1 5 77 8 5 888888 5 44 5 3 1 5 5 5 2222 22 77 99999999 99 2222 1 888888 1 33333 8 99 0 777 3333333333333333333333333333333333333333333333333 33 00000 777 3 444444444444 666 8 8 0000000000 8 444 888888888888888888888888888888888888888888888888888 88 44 88 3 2 666 22 5 88 88 5 0 0 7777777 0 7 3 2 555555 3 111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111 0 88888888 5 33 22 2 9999999 0 666666666666666 8 333333333333333333 8 3333333333 1 9999999999 6 8 2222222222 111 8 77777777777777777777777777777777777777777777777777777777777777777777777777777 0 2 8 444 8 0 33 7 0
lowQualScore : . . .. . . ...... . .. . . . . . . .... .. .. ........ .. .... . ...... . ..... . .. . ... ................................................. .. ..... ... . ............ ... . . .......... . ... ................................................... .. .. .. . . ... .. . .. .. . . . ....... . . . . ...... . ............................................................................................................... . ........ . .. .. . ....... . ............... . .................. . .......... . .......... . . .......... ... . ............................................................................. . . . ... . . .. . .
lowQualScore : 7 7 99 6 7 666666 7 77 7 7 6 7 7 7 1111 99 99 00000000 22 7777 0 333333 0 33333 0 22 0 555 5555555555555555555555555555555555555555555555555 88 00000 000 2 888888888888 222 2 0 2222222222 0 000 000000000000000000000000000000000000000000000000000 33 77 33 3 5 000 55 5 55 00 5 0 0 0000000 0 3 3 3 000000 3 000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 0 22222222 0 55 00 5 8888888 0 222222222222222 0 444444444444444444 0 8888888888 4 0000000000 0 0 2222222222 888 0 00000000000000000000000000000000000000000000000000000000000000000000000000000 0 0 0 000 8 0 88 8 0
consensus : TTAGGTGG-GGGC--GGAGCC-AATC--TTN-TGC-AGTTGTG-AATAGCTGGAGGGAAGC-GTGA-GGGTTTGTGTAT-ACCGT----CCTG-ATAA--CATGGGA---TT---AAT--CCC---CAGG------CCGTG-----TCGACGTTTGTCA--TAAGTCAAAAATGTTGA-AGT---AAAAC---T-AT-T-T--TG----AATTAGGAA-CAG---TTA---A-AA---AT--GTAAAAAT---TAGAAT-TTGTTTGATTA----------A-TTGTCTGCATGT-GC-G--ATCT-CGACGTCCAT-AACG---CACGG----GTCCGCAC---ATGCAGTCTGGACA-T-----C-G-T--TATATC--GCAT--TCCCNCTA--TCA-TNGTNCTGACGA-GAGGGTGGTTCAAGGATTNNTCAGATGTCAACTTTCCTCCTNNTCGCAGAAGTCCAGTCC-AATCCATTGTAAG----CGAA-AGGGC-T-C-TTA-T-G-GCGG-GT--AA--TTTCTC-TT-CC-GATA-----------GCTT-----TCG-----GTA-AC-------CA-----TA-----GCTG--------C-AAAGTAAAAAA--ATGTTTACAATTTTTCTACCTAAN-T-T--GAACACGATTCG--------CAT----CCTATGTCAATTCAAA-TTATGT-CTCAT----AC-CTATC-G-ATC------CTAATCCTAATCAAAACAC--A--TT---ATGG-ATTTAATTG------ATGCCGTGTA--TT-TT--------------G-T-----T-----------GT--------------------GTTGT-----AGC----GAG-CCGACAATAGATGTGTTACG-AAG---CCATAATT-TCCTA-TCAA-TACT-GTCAGTAC
Reference ( gi|5 ) : TTAGGTTG-GGGC--G-AGCC-AATC--AGT-TGC-AGTCGTG-AACAGCTGGAGGGAAGC-GTGA-GGGTTTGTGTAT-ACCGT----CCT--ATAA--CATGGGA---C----AAT--CCT---CAGG------CCGTG-----TCGACGTTTGTCA--TAAGTCAAAAATGTTGA-AGT---AAAAC---T-AT-T-T--T-----AATTAGGAACCAG---TTA---A-AA---AT--GTAAAAAT---TAGAA--TTGTTTGATTA----------A-TTGTCTGCATGTCGC-G--ATCT-CGACGTCCAT-AACG---CACGG----GTTTGCAC---AT-CTGTCTGGACA-T-----CTGAT-GTATATC--GCAT--TCCTCCTA--TCA-TGGTGCTGACGACGAGGGTGGTTCAAGGATTTATCAGATG-CAA-TTTCTTCCTCATC-TAG-AGTCCAGTCC-AATCCATTATA-G----CGAA-AGGGG-T-C-TTA-TGG-GCGG-GT--AA--TTTCTC-TT-CC-AA-------------GCTT-----TCG-----GTA-AC-------CA-----TA-----GTTG--------C-AAAGTAAAAAA--ATGTGTACACTTTTTCTACCTAAA-T-T--GAACAC-ATTCG--------CAT----CCTATGTCAATTCAAA-T---------------AC-CTATC-G-ATC------CTAATCCTAATCAAAACAC--A--TT---AT-G-ATTTAGTTG------ATGCCGTGCA--TT-TT--------------G-T-----T-----------GT--------------------ATTAT-----AGC----TA--CCGACAAGAGATGTG-TACG-AAG---CCATACTT-TTCT--TCAATTACT-GTCAGTAC
gi|14 : TTAGGTTG-GGGC--G-AGCC-AATC--AGT-TGC-AGTCGTG-AACAGCTGGAGGGAAGC-GTGA-GGGTTTGTGTAT-ACCGT----CCT--ATAA--CATGGGA---C----AAT--CCT---CAGG------CCGTG-----TCGACGTTTGTCA--TA
gi|13 : gtcatttgtaggccgaggcttttcgacccaccgtctacctcagtaagtTTAGGTGG-GGGC--GGAGCC-AATC--TTA-TGC-AGGTGTG-AATAGCTGGAGGGAAGC-GTGA-GGGTTTGTGTAT-ACCGT----CCTG-ATAA--CATAGGATC-T----AAT--CCC---CAGG------CCGTG-----TCGACG-TTGTCA--TAA
gi|11 : catttgtaggctgagattttcgacccatcggtctacctcagttaagtTTAGGTGG-GGGC--GGAGCC-AATC--TTA-TGC-AGGTGTGGAATAGCTGGAGGGAAGC-GTGA-GGGTTTGTGTAT-ACCGT----CCTGGATAA--CATGGAT---CT---AAT--CCC---CA-G------CCGTG-----TCGACG-TTGTCA--TA
gi|10 : gtcatttgtaggcgaggttttcgacccaccggtctacctaagttaagtTTAGAT-G-GGGTTGG-AGCT-AATTTTAAT--GCGAGGTGTG-AATTGCTGGAGAGCAGT-G-GA-GAGCTTGTGTAT-ACCGT----CCTCGATAA--CActaaacaagaggccaaaggccttac
gi|8 : ttaaagaccgagattttcgaccaccggttcctcaggtaagtTAGGTGGCGGGC--GGAGCCCAATC--TTG-TGC-AGT-GTG-A-TAGCTGGCGGAAAGC-GTGA-GGGTT-GTGTAT-ACCGTTTTCCCT--CTGATACATGGGA---TT---ACT--CCC---CAAGGC----CCGTG-----TCGAC-CTTGTCA--TAAGTCAAAAATGTTAAGAGC---AAAGG---T-ACAT-T--T-----AAT---------------------AG---AT--GTAAAA-T---TAGA---------GAA-A----------A-TT---TGCATGT-GC-G--A-AT-CGACGTCCAT-AACGACGCACGT----G---GCAC---ATGCAGT-TGGACA-TGTCATCTGATTGTATATTCGGCAT--TCCTCCTA--TCACTGGTCCTGACGA-GAGGGTGGTTCAAGA--TTATC-GATGTCAA-TTTCTTC-TCA-C-TAG-AAGTCAGTCC-CATCCATTATAAG----CGAACAGGGC-T-C-TTA---G-G-GG-GT--AA--T--CTC-TT-CC-GATA-----------GCTT------CG-----TTG-CC-------CA-----T------GTTG--------C-AAAGTAAA--------TTTACACTTTTTCTACCTAAATT-T--GAACACGATTTG--------ccgctgcaataacacggtgatttaatttccctgggccttgtttacctgtgttaccatgatttctaacttcaacgttgtcatattagtcaagcatatattgaaagtaaaataactctataaattaaaaaaaaaggaagagtgttttgtgtaaaattagtcaaaattcgtttgatatctaaatcaaaaga
gi|9 : taacttgTAGGTGG-TGGC--GGAGCC-AATC---GTATGC-AGTTGTG-AATTGCCGGAGGGTAGC-GTGA-GAGCTTGTGTAT-ACCAT----CCTG-ATAA--CACGGGGTCTT----AATTACCTGTGCCGGTGTTACCTGTATTACTTCGATG-TTGTCA--TAAGTAAAAAATGTTGA-AGT---AAAATAAAT-AT-TAT--TGTAAAAATTAGGA---AG-----A---ATAATTTAT--GTAAAACTAGCCAGAAT-TTGTTTGATTAATATCAAAAGA-TTGATTGTCTGT-GC-G--A-CT----CGTTCAT-AATG---CAC
gi|3 : ttttaaaggccgagattttcgacccaccggtttacctcaggaaagtgTG-GGGC--GGAGCC-AATC--TTA-TGC-AGT--TG-AATAACTGGAGGGCAGCCGTGAAGGGTTTGTGTATTACCGT----CCTG-ATAA--CATGGGA---TCGCTAAT--CCC---CAGG------C-GTGG----TCGACGTT-GTCAAATAAGTCAAAAATGTTGA-AGTAGAAAAAC---TCAT-T-TAATAA---AATTGCTAA-CAGAAATTAAGGA-AA---ATACATGAAAA----TAGAATTTTGTTTGATTA----------ATTTGTCTGCATGTGGCTG--ACCTGCGACGTCCATAAACG----ACGGTTACATTCGCACGATAT-C---CTGGAC--------C------TATATCA-GCATGGTCGCACTATTTCC-TCGTAC-GACGA--AGGGTGGTTC-AGGATTATTCAGATG-CAACTTTCCTCCTGCTCGCAGAAGTCC-GTCC-AGGCCATT-TA-GGAGTCGAA-AGGGGCT-CGCTACTGGTGCGGAGTTAAG--TTTCTCTTT-CC-GATATAATTAGCGTTGCTA-----TTGCATGTGTATACTTTGTAGCA-----T------GTTG--------CAAAAGT---AAA--ATGTTT-CAATTTTTCTA-CTAAA-T-TTGAAACATGATTCG---------AT----CCTATGTCAATTTAAATT---------------ACGCTATC-GTAT-------CTAATGCTAATCAAAACAC--ATTTT---ATGG-ATTTAGTTGA-----ATG-CGTGCAACTT-TT--------------GTT-----T-----------GTCTACAAAGGCGAAGTTAACAATTGTGTCAAAGC----GAG-CCGACAATAGATGTGTTACGAAAG---CCATAattactttcgta
gi|18 : TCAAAAATGTTGA-AGT---AAAAC---T-AT-T-T--T-----AATTAGGAACCAG---TTA---A-AA---AT--GTAAAAAT---TAGAA--TTGTTTGATTA----------A-TTGTCTGCATGTCGC-G--ATCT-CGACGTCCAT-AACG---CAC
gi|19 : CATGTTAC-GGTATAT-C--CGTCCAT-GACG---CACGG-----TCTGCAC---AAACAGTCTGGACATT-----CAGCT-CTATA-G--GTAT--TCCCTCCA--TCA-
gi|15 : aTCCAGTCCTAATCCATTGTAAG----CGAA-AAGGC-TCC-TTA-T-G-GCGG-AT--AATCTTTCTC-TTACCGAA-------------TCTTACGCGTGG-----GTA-AT-------TAGCTTGTAATACCGCTGAGACTGTCC-AAAGTACAGAAGGATGTTTAAAA-TTTTCTACCTGAT-TGT--GAACA
gi|6 : CTT-----TCG------------------TA-----TA-----GC----------C-AAAGTAAAATG--ATGTTTATAATTTTTCTACCTACT-T-T--GAACACGATTCGATCCCTATCATAGGGCCTATGTCAATTCAGA-TTATGTCCTC------AT-CTATC-G-TAC------CTAATCCTAGTCAAAACAC--A--TGCCAATGG-ATTTAATTG------ATG-CGTGTA--TTATTATCTTTTTTAAAAAG-T-----T-----------TT--------------------GTT-T-----AGC----AAG-CCGACAATGGATGAGTTACG-AAG---CCATGATTATTCTA-TCAA-TACT-GTCAGAAC
gi|7 : gttcataatgcacattaACAC-ATTCG--------CAT----CCTATGTCAATTCAAA-T---------------AC-CTATC-G-ATC------CTAATCCTAATCAAAACAC--A--TT---AT-G-ATTTAGTTG------ATGCCGTGCA--TT-TT--------------G-T-----T-----------GT--------------------ATTAT-----AGC----TA--CCGACAAGAGATGTG-TACG-AAG---CCATACTT-TTCT--TCAATTACT-GTCAGTACgaataacgatggtttggaatacagcataaattaattttgattttgttcatttttgggtcaataatgtcgcattgtcaatgacgattacataagattgtgtgatcaataatgccggaaaatcaatactttctctttctaaactcaacgtccgttcaaattatcggtcgttacttattcctaatcacaaacagccgatttacattcattatattttagctgatgtaattttatgtcaatttatatttcgcaacaataaatttattgcaa
gi|1 : ----CCTATGTCAATTGAAA-TTATGTACTCATAATTAT-CTATC-G-TAC------CTATTCCTAATCAAAACAC--A--TT---AT-GAATTTAATTG------AC-TCATGTA--TT-TT--------------T-TTTTTAT-----------GT--------------------TTTGA-----AGTATTGTG--CCGACAATAGATGTGTTACA-GAA---CCATTATT-TCCTA-TCAA-TACT-GTCAGTACtttctctttctaaattccaatgtctgttgaaattcttcctaatcaaaaacaactatttataaatcattaagctgatgtatatgtcaattattttcacgcttatttcgcaacataaatgtagtgccaaaaccataatatagtttatcattccaagtaatagtcgctactttctctttcgtataaaaaaatcaattgattatcaacaacccatcataatttaaattcattgcaacaatattatgtatttcaaagtcataatttttctatcaccacttctttagccatgctggttactagcggcattataagcttgcaaaaggttttcttcacacctcactcggtcgagaatgacaagaatatacacacg
gi|2 : tttccggtcTGTCAATTCAAA-TTATGTGCTCATT---AA-TTATCTG-ATCGTCGGCCTATTCCTAATCAAAACACTGT--TT---AT-G-ATTTAATTGGGATGCGTGCCGTGT---TT-TT--------------G-TAG---TTGGAAGTTTTGGT--------------------GTT-T-----AGC----GATTCCGACAATAGATGCGTTACA-AAAGGTCCATAATT-TCCGAATCAA-TACTCGTTAGTACtttctcttttcgtataaactcgatatccgttcaaattatctgttgtactatatctatcacaacaaccctaatcatatattttaactgatgtaattgtatgttcaattatttttcaagtcttatttcgcaactaattatgtattgcaaagccatgatattaatactgcttcatcttcaagaatagtcgaactttctctttcgtataaaaatcaaatttttcctcgccacctattcctgatcacaacccatcatgatttattaattttaattgatgtaaaactttgtatgttaacttcatttcaaatcttatttgcaacaatagatgtattacaaagtcatcatttatcaataatattactttatcatgctggtatactacatggtaagcatcaaaagattttcttcatgcctcgatcgagacaaaaggttgacaggatacacacgcagattagttactaaatgtcaatcaatttctatcatccaatataaaggtaagttgcaaatgactgacagtggtacgtaaaccagggaaaatttgagggtggtggcttatttttccggcc
6 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|4 ): TTTGTTCATTTTTGGGTCAATAATGTCGCATTGTCAATGACGATTACATAAGATTGTGTGATCAATAATGCCGGAAAATCAATACTTTCTCTTTCTAAACTCAACGTCCGTTCAAATTATCGGTCGTTACTTATTCCTAATCACAAACAGCCGATTTACATTCATTATATTTTAGCTGATGTAATTTTATGTCAATTTATATTTCGCAACAATAAATTTATTGCAAGCATAATACTGTTTCGTCATCAGAAATAGTCGGTACTTTCTCCTACTTTTCTCTTTCGTATAAAGAAATCAAGTATTATTCACCCCACCAAGTCCTTAATCAACAAACCCATCATAATTTTATTCATTTTAATTTATGTTAAACTTTGCATGTTAACTTTATTTTAAATCTTATTTGCAACAATAGATGTATTTCAAAGTCATAATTTTTCTATCAATGCCATTTCGTTATCGTGCTGGGGTACTACGCGGTAAGCATCAAAAGATTTTCTTCACACCTCGCTCTAGACACGAGGTTGACAAAATATACGCACGGATTAGTTACTAAATGTCAATCAATTTCTATCAAATGACTGACAGTGGTACCTAGTTTAGGTAAATTCGAGGGCGGTGGCTTATTTCCTCGGTCTTTAAC
Unaligned ( gi|12 ): CTAAAACCGAGCTGATTGACCCACTGGTTTACCTCAGGTAGGTTAAGCTGAGGGGTGGAGCTAATTTTACGCAGGCGTGAAGCCCCTGATGGAATCATGCTAGCTTGTGCATACCCTTTAAGATCACGCGGGATTTTATTCGCATTACCTGTATTACCTGTATTACTTCGAAGTTTTCTTTCAAAGTAG
Unaligned ( gi|16 ): ATATTGTCAGATTTTTTCTCTTTCTAAATTCGATGTCTGTTGAAAGTATTTGTCTTACTTATTCCTAATCACAATAACCTATTATAATTCATAAGCTGATGTAATTACATGTCAATTATTTTTCACGTCTTATTTCGCAACAAAT
Unaligned ( gi|17 ): AAGGGAGATAAGATGTACGAAGGACGAGTAACTAAATGTCAATCAATTTAGCATCCAAAAGTGAAGCTTAATTTTTCAAAGATTTACAGGGGTTCACAGAACAGGTAAATTTGAGGGCGGTACTTATTTCCTTGGTCTT
Unaligned ( gi|20 ): ATCAAACGATAATCTTCACACCTCACTCGAGACACAAGGTTTACTAGATATACACACGGATTAGTTACTAAATGTC
Unaligned ( gi|21 ): ATTTAAAGTCCAGGTTTTTCAACCGTGGGTTTTCCTCAGGTAAGTTAAAGTGGA
Alignments
lowQualScore : 111111111111111111111111111111111111111111111111111111111111111111111 1111111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 111111 11 2222222 33333333333333 1 111 555555555555555555 1 111 222 111 11 1111 11 3333333333 1111 1 111 33333333 1 1 8888888888888888 3333 11 11 1 22 11 11 2 2 222 1 1 111 1 1 1 1 222 111 1 11 111 2 222222222222222222222222222222222222222222222222222222222222222222222 222222 1 333333333 1111 4444444444444444 222222 111 222222222 2222222222222 111111 2222222222222222222222222222222222222222222222222222222222222222222222222222222 11 1
lowQualScore : 5 2 5 0 66 5 0 5 0 5 5 5 444444 22 6666666 5 77 5 99999999999999 4 77 8 444 0 111111111111111111 8 6 444 0 222 444 11 5 7777 66 8 0 5555555555 999 7777 3 8 6 111 99999999 0 9 2 7777777777777777 4444 33 1 33 0 1 1 7 00 44 55 7 3 3 0 22 555 7 2 3 0 0 3 777 0 0 0 0 333 666 0 33 777 0 444444444444444444444444444444444444444444444444444444444444444444444 8 999999 0 11 8 1 8 6 0 111111111 7777 5555555555555555 777 888888 2 77 777 444444444 5 6666666666666 77 666666 5 9999999999999999999999999999999999999999999999999999999999999999999999999999999 3 5 888 5 666 00 1 8
lowQualScore : . . . . .. . . . . . . . ...... .. ....... . .. . .............. . .. . ... . .................. . . ... . ... ... .. . .... .. . . .......... ... .... . . . ... ........ . . . ................ .... .. . .. . . . . .. .. .. . . . . .. ... . . . . . . ... . . . . ... ... . .. ... . ..................................................................... . ...... . .. . . . . . ......... .... ................ ... ...... . .. ... ......... . ............. .. ...... . ............................................................................... . . ... . ... .. . .
lowQualScore : 0 5 0 5 00 0 9 0 2 0 0 0 444444 55 0000000 7 99 7 33333333333333 1 99 0 000 8 000000000000000000 0 0 000 8 000 000 00 6 8888 22 0 8 0000000000 000 0000 6 0 7 777 55555555 0 0 5 0000000000000000 0000 88 0 88 0 0 0 3 00 00 00 3 7 3 7 00 333 3 5 2 0 5 2 555 0 0 0 0 222 222 0 88 000 0 444444444444444444444444444444444444444444444444444444444444444444444 0 888888 8 44 0 0 0 7 0 555555555 0000 8888888888888888 555 666666 1 99 999 666666666 7 7777777777777 99 444444 7 7777777777777777777777777777777777777777777777777777777777777777777777777777777 2 0 888 7 444 77 4 0
consensus : TTAGGTGG-GGGCGGAGCC-AATCTTA-TGC-AGTCGTG-AATAGCTGGAGGGAAGC-GTGA-GGGTTTGTGTAT-ACCGTC------CT-GATAACATGGGA--T---TAATCCCCAG-G--CC-GTG--------------TCGACGTTTGTCA--TAAGTCAAAAATGTTGA-AGTA---AAAC---T-ATT-T--T-----AA-TTAGGAACCAG---TTAA---AA---ATGTA--AAAAT---TAGAATTT-GTTTGATTA----------ATT-GTCTGCATGTCG--CGATCT-CGACGTCCATAA-CG---CACGG----GTTCGCAC-ATGCAGTCTGGACAT--CCGAC-------TATAT-C--GCAT--TCCCCCTAT--CA-TGGTNCTGACGA-GAGGGTGGTTCAAGGATT-ATCAGATG-CAA-TTTCTTCCCGCTC-CAGAAGTCCAGTCC-AATCCATTATAAG---CGAA-AGGG-CT-C-TTA-T-GG--CGG-GT--AA--TTTCTCTT-CCGATA-----------GCTT-----TCG-----GTA-ACT--A-----TA-----GC----TG--------CAAA-GTAAAAAA--ATGTTTACAATTTTTCTACCT-AATT-TGAA-CACGATTCG--------CAT----CCTATGTCAATTCAAATTATGT-CTCAT-A-CTATC-G-ATC------CTANTCCTAATCAAAACACA--TT---ATGG-------ATTT-AGTTGA------TG-----CCGTGCA--T------T-TT--------------G--------------------------T------------T----G-TGTT-----ATAGCGAG-CCGACAATAGATGTGTTACG-AAG---CCATAA-TT-TTCT-ATCAA-TACT-GTCAGTAC
Reference ( family-2679 ) : TTAGGTGG-GGGCGGAGCC-AATCTTN-TGC-AGTTGTG-AATAGCTGGAGGGAAGC-GTGA-GGGTTTGTGTAT-ACCGTC------CT-GATAACATGGGA--T---TAATCCCCAG-G--CC-GTG--------------TCGACGTTTGTCA--TAAGTCAAAAATGTTGA-AGTA---AAAC---T-ATT-T--TG----AA-TTAGGAA-CAG---TTAA---AA---ATGTA--AAAAT---TAGAATTT-GTTTGATTA----------ATT-GTCTGCATGT-G--CGATCT-CGACGTCCATAA-CG---CACGG----GTCCGCAC-ATGCAGTCTGGACAT--C--GT-------TATAT-C--GCAT--TCCCNCTAT--CA-TNGTNCTGACGA-GAGGGTGGTTCAAGGATTNNTCAGATGTCAACTTTCCTCCTNNTCGCAGAAGTCCAGTCC-AATCCATTGTAAG---CGAA-AGGG-CT-C-TTA-T-GG--CGG-GT--AA--TTTCTCTT-CCGATA-----------GCTT-----TCG-----GTA-ACC--A-----TA-----GC----TG--------CAAA-GTAAAAAA--ATGTTTACAATTTTTCTACCT-AANT-TGAA-CACGATTCG--------CAT----CCTATGTCAATTCAAATTATGT-CTCAT-ACCTATC-G-ATC------CTAATCCTAATCAAAACACA--TT---ATGG-------ATTT-AATTGA------TG-----CCGTGTA--T------T-TT--------------G--------------------------T------------T----G-TGTT-----GTAGCGAG-CCGACAATAGATGTGTTACG-AAG---CCATAA-TT-TCCT-ATCAA-TACT-GTCAGTAC
gi|1 : ----CCTATGTCAATTGAAATTATGTACTCAT-AATTATC-T-ATCGTAC--CTATTCCTAATCAAAACACA--TT---ATGA-------ATTT-AATTGA------C------TCATGTA--T------T-TT--------------T--------------------------T------------TTTT-A-TGTTTTGAAGTATTGTG-CCGACAATAGATGTGTTACA-GAA---CCATTA-TT-TCCT-ATCAA-TACT-GTCAGTAC
gi|1 : tttccggtcC------CTATTCCTGATCACAACCCA--TC---ATGATTTATTAATTTTAATTGA------TGTAAAACTTTGTA--TGTTAACT-TC--------------A--------------------------T------------TTCAAA-TCTT-----AT-TTG----CAACAATAGATGTATTACA-AAG---TCATCA-TT----T-ATCAA-TAtttctcttttcgtataaactcgatatccgttcaaattatctgttgtactatatctatcacaacaaccctaatcatatattttaactgatgtaattgtatgttcaattatttttcaagtcttatttcgcaactaattatgtattgcaaagccatgatattaatactgcttcatcttcaagaatagtcgaactttctctttcgtataaaaatcaaatttttcctcgccacctattcctgatcacaacccatcatgatttattaattttaattgatgtaaaactttgtatgttaacttcatttcaaatcttatttgcaacaatagatgtattacaaagtcatcatttatcaataatattactttatcatgctggtatactacatggtaagcatcaaaagattttcttcatgcctcgatcgagacaaaaggttgacaggatacacacgcagattagttactaaatgtcaatcaatttctatcatccaatataaaggtaagttgcaaatgactgacagtggtacgtaaaccagggaaaatttgagggtggtggcttatttttccggcc
gi|10 : tttccggtccctatgtcaattgaaattatgtactcataattatctatcgtacctattcctaatcaaaacacattatgaatttaattgactcatgtattttttttttatgttttgaagtattgtgccgacaatagatgtgttacagaaccattatttcctatcaatactgtcagtactttctcttttcgtataaactcgatatccgttcaaattatctgttgtactatatctatcacaacaaccctaatcatatattttaactgatgtaattgtatgttcaattatttttcaagtcttatttcgcaactaattatgtattgcaaagccatgatattaatactgcttcatcttcaagaatagtcgaactttctctttcgtataaaaatcaaatttttcctcgccaTTAGATGG-GGTTGGAGCT-AATTTTAATGCGAGGTGTG-AATTGCTGGAGAGCAGT-G-GA-GAGCTTGTGTAT-ACCGTC------CTCGATAACAatattactttatcatgctggtatactacatggtaagcatcaaaagattttcttcatgcctcgatcgagacaaaaggttgacaggatacacacgcagattagttactaaatgtcaatcaatttctatcatccaatataaaggtaagttgcaaatgactgacagtggtacgtaaaccagggaaaatttgagggtggtggcttatttttccggcc
gi|11 : ttaaagaccgagattttcgaccaccggttcctcaggtaagtTTAGGTGG-GGGCGGAGCC-AATCTTA-TGC-AGGTGTGGAATAGCTGGAGGGAAGC-GTGA-GGGTTTGTGTAT-ACCGTC------CTGGATAACATGGAT--C---TAATCCCCA--G--CC-GTG--------------TCGACG-TTGTCA--TAccgctgcaataacacggtgatttaatttccctgggccttgtttacctgtgttaccatgatttctaacttcaacgttgtcatattagtcaagcatatattgaaagtaaaataactctataaattaaaaaaaaaggaagagtgttttgtgtaaaattagtcaaaattcgtttgatatctaaatcaaaaga
gi|13 : gtcatttgtaggcgaggttttcgacccaccggtctacctaagttaagtTTAGGTGG-GGGCGGAGCC-AATCTTA-TGC-AGGTGTG-AATAGCTGGAGGGAAGC-GTGA-GGGTTTGTGTAT-ACCGTC------CT-GATAACATAGGA--TC--TAATCCCCAG-G--CC-GTG--------------TCGACG-TTGTCA--TAActaaacaagaggccaaaggccttac
gi|14 : catttgtaggctgagattttcgacccatcggtctacctcagttaagtTTAGGTTG-GGGCG-AGCC-AATCAGT-TGC-AGTCGTG-AACAGCTGGAGGGAAGC-GTGA-GGGTTTGTGTAT-ACCGTC------CT--ATAACATGGGA------CAATCCTCAG-G--CC-GTG--------------TCGACGTTTGTCA--TA
gi|15 : gtcatttgtaggccgaggcttttcgacccaccgtctacctcagtaagtTCCAGTCCTAATCCATTGTAAG---CGAA-AAGG-CTCC-TTA-T-GG--CGG-AT--AATCTTTCTCTTACCGA-A-----------TCTTACGCGTGG-----GTA-ATT--AGCTTGTAATACCGC----TGAGACTGTCCAAA-GTACAGAAGGATGTTTAAAA-TTTTCTACCT-GATTGTGAA-CA
gi|18 : TCAAAAATGTTGA-AGTA---AAAC---T-ATT-T--T-----AA-TTAGGAACCAG---TTAA---AA---ATGTA--AAAAT---TAGAA-TT-GTTTGATTA----------ATT-GTCTGCATGTCG--CGATCT-CGACGTCCATAA-CG---CAC
gi|19 : CGTCCATGA-CG---CACGG-----TCTGCAC-AAACAGTCTGGACAT--TCAGC-------TCTATAG--GTAT--TCCCTCCAT--CA-
gi|2 : acatgttacggtatatcTGTCAATTCAAATTATGTGCTCATTAATTATCTG-ATCGTCGGCCTATTCCTAATCAAAACACTGTTT---ATG--------ATTT-AATTGGGATGCGTG-----CCGTGT---T------T-TT--------------G--------------------------TAGTTGGAAGTTTT----GGTGTT------TAGCGATTCCGACAATAGATGCGTTACA-AAAGGTCCATAA-TT-TCCGAATCAA-TACTCGTTAGTAC
gi|3 : aattgcggtccctgttG-GGGCGGAGCC-AATCTTA-TGC-AGTTG---AATAACTGGAGGGCAGCCGTGAAGGGTTTGTGTATTACCGTC------CT-GATAACATGGGA--TCGCTAATCCCCAG-G--C--GTGG-------------TCGACGTT-GTCAAATAAGTCAAAAATGTTGA-AGTAGAAAAAC---TCATT-TAATA----AAATTGCTAA-CAGAAATTAAGGAAA---ATACATGAAAAT----AGAATTTTGTTTGATTA----------ATTTGTCTGCATGT-GGCTGACCTGCGACGTCCATAAACG----ACGGTTACATTCGCACGAT--ATCCTGGAC--------C-------TATAT-CA-GCATGGTCGCACTATTTCC-TCGTAC-GACGA--AGGGTGGTTCA-GGATTATTCAGATG-CAACTTTCCTCCTGCTCGCAGAAGTCC-GTCC-AGGCCATT-TAGGAGTCGAA-AGGGGCT-CGCTACT-GGTGCGGAGTTAAG--TTTCTCTTTCCGATATAATTAGCGTTGCTA-----TTGCATGTGTATACTTTG-----TA-----GCATGTTG--------CAAAAGTAAAA-----TGTTT-CAATTTTTCTACTA-AATT-TGAAACATGATTCG---------AT----CCTATGTCAATTTAAATTACG----------CTATC-GTATC-------TAATGCTAATCAAAACACA--TTTT-ATGG-------ATTT-AGTTGAA-----TG-----C-GTGCAACT------T-TT--------------GTTTGTCTACAAAGGCGAAGTTAACAAT------------T----G-TGTC-----AAAGCGAG-CCGACAATAGATGTGTTACGAAAG---CCATAatgtactttcctcttttccgttattaactgatgtcgcggttcaaagtatctgttttatttgattcctgatcacaacaatccatctttaatgcattatagatttgcaactgattaattggtatgtcaattatgttgttcaagtctttatttcgcgaacaattaaacatcttcaagaataggcggtactttcgtcttcgttttaacatcgctattttaatcatttttaattcgtgtaaaactttgcatgtaatttttattcaaatctatattttgcaaacaatacatttgtttctatcaataccttttcggttatcatgcctgtgtactacctgcaggctaagacatcacaaacgattaactcttcacaccttcagcttcgagacaaccgggagtcagaacaggatatgacacggattaggtagctaaacgctcaatcaatttctatcctcctccaatatagaggtaaattgcaaaaatgactgacagcaggctacctagaccagtgtaaatttgagggaggtgggcttatttt
gi|4 : tCAACAATAGATGTATTTCA-AAG---TCATAATTT-TTCT-ATCAA-TGC
gi|5 : tttgttcatttttgggtcaataatgtcgcattgtcaatgacgattacataagattgtgtgatcaataatgccggaaaatcaatactttctctttctaaactcaacgtccgttcaaattatcggtcgttacttattcctaatcacaaacagccgatttacattcattatattttagctgatgtaattttatgtcaatttatatttcgcaacaataaatttattgcaagcataatactgtttcgtcatcagaaatagtcggtactttctcctacttttctctttcgtataaagaaatcaagtattattcaccccaccaagtccttaatcaacaaacccatcataattttattcattttaatttatgttaaactttgcatgttaactttattttaaatcttatttgTTAGGTTG-GGGCG-AGCC-AATCAGT-TGC-AGTCGTG-AACAGCTGGAGGGAAGC-GTGA-GGGTTTGTGTAT-ACCGTC------CT--ATAACATGGGA--C----AATCCTCAG-G--CC-GTG--------------TCGACGTTTGTCA--TAAGTCAAAAATGTTGA-AGTA---AAAC---T-ATT-T--T-----AA-TTAGGAACCAG---TTAA---AA---ATGTA--AAAAT---TAGAA-TT-GTTTGATTA----------ATT-GTCTGCATGTCG--CGATCT-CGACGTCCATAA-CG---CACGG----GTTTGCAC-AT-CTGTCTGGACAT--CTGATG------TATAT-C--GCAT--TCCTCCTAT--CA-TGGTGCTGACGACGAGGGTGGTTCAAGGATTTATCAGATG-CAA-TTTCTTCCTCATC-TAG-AGTCCAGTCC-AATCCATTAT-AG---CGAA-AGGG-GT-C-TTA-TGGG--CGG-GT--AA--TTTCTCTT-CCA--A-----------GCTT-----TCG-----GTA-ACC--A-----TA-----GT----TG--------CAAA-GTAAAAAA--ATGTGTACACTTTTTCTACCT-AAAT-TGAA-CAC-ATTCG--------CAT----CCTATGTCAATTCAA-----------AT-ACCTATC-G-ATC------CTAATCCTAATCAAAACACA--TT---AT-G-------ATTT-AGTTGA------TG-----CCGTGCA--T------T-TT--------------G--------------------------T------------T----G-TATT-----ATAGCTA--CCGACAAGAGATGTG-TACG-AAG---CCATAC-TT-TTCT--TCAATTACT-GTCAGTACcatttcgttatcgtgctggggtactacgcggtaagcatcaaaagattttcttcacacctcgctctagacacgaggttgacaaaatatacgcacggattagttactaaatgtcaatcaatttctatcaaatgactgacagtggtacctagtttaggtaaattcgagggcggtggcttatttcctcggtctttaac
gi|6 : CTT-----TCG-----------T--A-----TA-----GC--------------CAAA-GTAAAATG--ATGTTTATAATTTTTCTACCT-ACTT-TGAA-CACGATTCGATCCCTATCATAGGGCCTATGTCAATTCAGATTATGTCCTCAT---CTATC-G-TAC------CTAATCCTAGTCAAAACACA--TGCCAATGG-------ATTT-AATTGA------TG------CGTGTA--T------TATTATCTTTTTTAAAAAG--------------------------T------------T----T-TGTT------TAGCAAG-CCGACAATGGATGAGTTACG-AAG---CCATGA-TTATTCT-ATCAA-TACT-GTCAGAAC
gi|7 : gttcataatgcacattaA-CAC-ATTCG--------CAT----CCTATGTCAATTCAA-----------AT-ACCTATC-G-ATC------CTAATCCTAATCAAAACACA--TT---AT-G-------ATTT-AGTTGA------TG-----CCGTGCA--T------T-TT--------------G--------------------------T------------T----G-TATT-----ATAGCTA--CCGACAAGAGATGTG-TACG-AAG---CCATAC-TT-TTCT--TCAATTACT-GTCAGTACgaataacgatggtttggaatacagcataaattaattttgattttgttcatttttgggtcaataatgtcgcattgtcaatgacgattacataagattgtgtgatcaataatgccggaaaatcaatactttctctttctaaactcaacgtccgttcaaattatcggtcgttacttattcctaatcacaaacagccgatttacattcattatattttagctgatgtaattttatgtcaatttatatttcgcaacaataaatttattgcaa
gi|8 : TAGGTGGCGGGCGGAGCCCAATCTTG-TGC-AGT-GTG-A-TAGCTGGCGGAAAGC-GTGA-GGGTT-GTGTAT-ACCGTTTTCCCTCT-GATA-CATGGGA--T---TACTCCCCAA-GGCCC-GTG--------------TCGAC-CTTGTCA--TAAGTCAAAAATGTTAAGAGCA---AA--------------------------GGTA-CAT---TTAAT--AG---ATGTA--AAA-T---TAGA---------GAA-A----------ATT----TGCATGT-G--CGA-AT-CGACGTCCATAA-CGACGCACGT----G---GCAC-ATGCAGT-TGGACATGTC--ATCTGATTGTATAT-TCGGCAT--TCCTCCTAT--CACTGGTCCTGACGA-GAGGGTGGTTCAA-GATT-ATC-GATGTCAA-TTTCTTCTCACT---AGAAGT-CAGTCC-CATCCATTATAAG---CGAACAGGG-CT-C-TTA---GG---GG-GT--AA----TCTCTT-CCGATA-----------GC-T-----TCG-----TTG-CCC--A-----T------GT----TG--------CAAA-GTAAA--------TTTACACTTTTTCTACCTAAATT-TGAA-CACGATTTG--------tttctctttctaaattccaatgtctgttgaaattcttcctaatcaaaaacaactatttataaatcattaagctgatgtatatgtcaattattttcacgcttatttcgcaacataaatgtagtgccaaaaccataatatagtttatcattccaagtaatagtcgctactttctctttcgtataaaaaaatcaattgattatcaacaacccatcataatttaaattcattgcaacaatattatgtatttcaaagtcataatttttctatcaccacttctttagccatgctggttactagcggcattataagcttgcaaaaggttttcttcacacctcactcggtcgagaatgacaagaatatacacacg
gi|9 : taacttgTAGGTGG-TGGCGGAGCC-AATCGTA-TGC-AGTTGTG-AATTGCCGGAGGGTAGC-GTGA-GAGCTTGTGTAT-ACCATC------CT-GATAACACGGGGTCT---TAATTACCTGTG--CCGGTGTTACCTGTATTACTTCGATG-TTGTCA--TAAGTAAAAAATGTTGA-AGTA---AAATAAAT-ATTAT--TGTAAAAA-TTAGGAA-GAA---T------AATTTATGTA--AAACTAGCCAGAATTT-GTTTGATTAATATCAAAAGATT-GATTGTCTGT-G--CGA-CT----CGTTCATAA-TG---CAC
5 sequences could not be aligned to this reference sequence:
Unaligned ( gi|12 ): CTAAAACCGAGCTGATTGACCCACTGGTTTACCTCAGGTAGGTTAAGCTGAGGGGTGGAGCTAATTTTACGCAGGCGTGAAGCCCCTGATGGAATCATGCTAGCTTGTGCATACCCTTTAAGATCACGCGGGATTTTATTCGCATTACCTGTATTACCTGTATTACTTCGAAGTTTTCTTTCAAAGTAG
Unaligned ( gi|16 ): ATATTGTCAGATTTTTTCTCTTTCTAAATTCGATGTCTGTTGAAAGTATTTGTCTTACTTATTCCTAATCACAATAACCTATTATAATTCATAAGCTGATGTAATTACATGTCAATTATTTTTCACGTCTTATTTCGCAACAAAT
Unaligned ( gi|17 ): AAGGGAGATAAGATGTACGAAGGACGAGTAACTAAATGTCAATCAATTTAGCATCCAAAAGTGAAGCTTAATTTTTCAAAGATTTACAGGGGTTCACAGAACAGGTAAATTTGAGGGCGGTACTTATTTCCTTGGTCTT
Unaligned ( gi|20 ): ATCAAACGATAATCTTCACACCTCACTCGAGACACAAGGTTTACTAGATATACACACGGATTAGTTACTAAATGTC
Unaligned ( gi|21 ): ATTTAAAGTCCAGGTTTTTCAACCGTGGGTTTTCCTCAGGTAAGTTAAAGTGGA
Alignments
lowQualScore : 111111111111111111111111111111111111111111111111111111111111111111111 11111111111111111111111111111111111111111111111111111111
lowQualScore : 1 111111 11 2222222 33333333333333 1 111 111 444444444444444444444444444444444 111 11 1111 11 3333333333 1 1111 111 33333333 1 1 3333333333333 33333 1 11 11 1 22 11 1 1 1 1 222 1 111 1 1 1 1 222 111 1 11 111 2 222222222222222222222222222222222222222222222222222222222222222222222 222222 1 333333333 1111 8888888888888888 222222222 111 222222222 111111111111111 111111 22222222222222222222222222222222222222222222222222222222 22222222222222 11 1
lowQualScore : 5 2 5 0 5 5 0 5 0 5 5 5 444444 22 6666666 5 77 5 99999999999999 4 77 8 444 444 8 8 8 111111111111111111111111111111111 444 11 5 7777 66 8 0 5555555555 999 3 6 0000 777 6 111 66666666 0 9 2 8888888888888 0 33333 0 33 0 33 0 1 7 00 44 3 3 7 3 3 44 333 7 2 3 0 7 3 777 0 0 0 0 333 666 0 33 777 0 111111111111111111111111111111111111111111111111111111111111111111111 8 999999 0 11 8 8 6 0 111111111 7777 7 4444444444444444 6 222222222 1 77 777 444444444 5 999999999999999 77 666666 5 77777777777777777777777777777777777777777777777777777777 44444444444444 3 5 888 5 5 00 1 8
lowQualScore : . . . . . . . . . . . . ...... .. ....... . .. . .............. . .. . ... ... . . . ................................. ... .. . .... .. . . .......... ... . . .... ... . ... ........ . . . ............. . ..... . .. . .. . . . .. .. . . . . . .. ... . . . . . . ... . . . . ... ... . .. ... . ..................................................................... . ...... . .. . . . . ......... .... . ................ . ......... . .. ... ......... . ............... .. ...... . ........................................................ .............. . . ... . . .. . .
lowQualScore : 0 5 0 5 0 0 5 0 2 0 0 0 444444 55 0000000 7 99 7 33333333333333 1 99 0 000 000 0 0 0 666666666666666666666666666666666 000 00 6 8888 22 0 8 0000000000 000 5 7 0000 555 7 777 00000000 0 0 5 8888888888888 8 88888 0 88 2 88 0 0 3 00 00 3 3 3 3 3 33 777 3 5 2 0 0 2 555 0 0 0 0 222 222 0 88 000 0 888888888888888888888888888888888888888888888888888888888888888888888 0 888888 8 44 0 0 7 0 555555555 0000 3 8888888888888888 7 444444444 0 99 999 666666666 7 999999999999999 99 444444 7 99999999999999999999999999999999999999999999999999999999 11111111111111 2 0 888 7 7 77 4 0
consensus : TTAGGTGG-GGGCGGAGCC-AATCTTA-TGC-AGTCGTG-AATAGCTGGAGGGAAGC-GTGA-GGGTTTGTGTAT-ACCGTC------CT-GATAACATGGGA--T---TAATCCCCAG-G--CC-GTG--------------TCGACGTTTGTCA--TAAGTCAAAAATGTTGA-AGTA---AAAC---T-AT-T-T--T-----AA--TTAGGAACCAG---TTAA---AA---ATGTA--AAAAT---TAGAATTT-GTTTGATTA----------ATT-GTCTGCATGTCGC-G--ATCT-CGACGTCCATAA-CG---CACGG----GTTCGCAC-ATGCAGTCTGGACAT-----CCGAC-TATATA--C-G-CAT--TCCCCCTAT--CA-TGGTNCTGACGA-GAGGGTGGTTCAAGGA-TTAT-CAGATG-CAA-TTTCTTCCCGCTC-CAGAAGTCCAGTCC-AATCCATTATAAG---CGAA-AGGG-CT-C-TTA-T-GG--CGG-GT--AA--TTTCTCTT-CCGATA-----------GCTT-----TCG-----GTA-ACT--A-----TA-----GC----TG--------CAAA-GTAAAAAA--ATGTTTACAATTTTTCTACCT-AATT-TGAA-CACGATTCG--------CAT----CCTATGTCAATTCAAATTACGT-CTCAT--------CTATC-G-AT------CCTANTCCTAATCAAAACAC--ATT---ATGG-------ATTT-AGTTG------A-TG-----CCGTGCA--T------T-TT--------------G--------------------------T--TT----------GTGTT-----ATAGCGA-GCCGACAATAGATGTGTTACG-AAG---CCATAA-TT-TTCT-ATCAA-TACT-GTCAGTAC
Reference ( family-2679 ) : TTAGGTGG-GGGCGGAGCC-AATCTTA-TGC-AGTCGTG-AATAGCTGGAGGGAAGC-GTGA-GGGTTTGTGTAT-ACCGTC------CT-GATAACATGGGA--T---TAATCCCCAG-G--CC-GTG--------------TCGACGTTTGTCA--TAAGTCAAAAATGTTGA-AGTA---AAAC---T-AT-T-T--T-----AA--TTAGGAACCAG---TTAA---AA---ATGTA--AAAAT---TAGAATTT-GTTTGATTA----------ATT-GTCTGCATGTCGC-G--ATCT-CGACGTCCATAA-CG---CACGG----GTTCGCAC-ATGCAGTCTGGACAT-----CCGAC-TATAT---C-G-CAT--TCCCCCTAT--CA-TGGTNCTGACGA-GAGGGTGGTTCAAGGA-TTAT-CAGATG-CAA-TTTCTTCCCGCTC-CAGAAGTCCAGTCC-AATCCATTATAAG---CGAA-AGGG-CT-C-TTA-T-GG--CGG-GT--AA--TTTCTCTT-CCGATA-----------GCTT-----TCG-----GTA-ACT--A-----TA-----GC----TG--------CAAA-GTAAAAAA--ATGTTTACAATTTTTCTACCT-AATT-TGAA-CACGATTCG--------CAT----CCTATGTCAATTCAAATTATGT-CTCAT--A-----CTATC-G-AT------CCTANTCCTAATCAAAACAC--ATT---ATGG-------ATTT-AGTTG------A-TG-----CCGTGCA--T------T-TT--------------G--------------------------T--T-----------GTGTT-----ATAGCGA-GCCGACAATAGATGTGTTACG-AAG---CCATAA-TT-TTCT-ATCAA-TACT-GTCAGTAC
gi|1 : ----CCTATGTCAATTGAAATTATGTACTCAT--AATTATCTATC-G-TA------CCTATTCCTAATCAAAACAC--ATT---ATGA-------ATTT-AATTG------A-C------TCATGTA--T------T-TT--------------T--------------------------T--TTTT--------ATGTTTTGAAGTATTGT-GCCGACAATAGATGTGTTACA-GAA---CCATTA-TT-TCCT-ATCAA-TACT-GTCAGTAC
gi|1 : tttccggtc------CCTATTCCTGATCACAACCC--ATC---ATGATTTATTAATTTTAATTG------A-TGTAAAACTTTGTA--TGTTAACT-TC--------------A--------------------------T--TTCAA-------ATCTT-----AT-TTG----CAACAATAGATGTATTACA-AAG---TCATCA-TT----T-ATCAA-TAtttctcttttcgtataaactcgatatccgttcaaattatctgttgtactatatctatcacaacaaccctaatcatatattttaactgatgtaattgtatgttcaattatttttcaagtcttatttcgcaactaattatgtattgcaaagccatgatattaatactgcttcatcttcaagaatagtcgaactttctctttcgtataaaaatcaaatttttcctcgccacctattcctgatcacaacccatcatgatttattaattttaattgatgtaaaactttgtatgttaacttcatttcaaatcttatttgcaacaatagatgtattacaaagtcatcatttatcaataatattactttatcatgctggtatactacatggtaagcatcaaaagattttcttcatgcctcgatcgagacaaaaggttgacaggatacacacgcagattagttactaaatgtcaatcaatttctatcatccaatataaaggtaagttgcaaatgactgacagtggtacgtaaaccagggaaaatttgagggtggtggcttatttttccggcc
gi|10 : tttccggtccctatgtcaattgaaattatgtactcataattatctatcgtacctattcctaatcaaaacacattatgaatttaattgactcatgtattttttttttatgttttgaagtattgtgccgacaatagatgtgttacagaaccattatttcctatcaatactgtcagtactttctcttttcgtataaactcgatatccgttcaaattatctgttgtactatatctatcacaacaaccctaatcatatattttaactgatgtaattgtatgttcaattatttttcaagtcttatttcgcaactaattatgtattgcaaagccatgatattaatactgcttcatcttcaagaatagtcgaactttctctttcgtataaaaatcaaatttttcctcgccaTTAGATGG-GGTTGGAGCT-AATTTTAATGCGAGGTGTG-AATTGCTGGAGAGCAGT-G-GA-GAGCTTGTGTAT-ACCGTC------CTCGATAACAatattactttatcatgctggtatactacatggtaagcatcaaaagattttcttcatgcctcgatcgagacaaaaggttgacaggatacacacgcagattagttactaaatgtcaatcaatttctatcatccaatataaaggtaagttgcaaatgactgacagtggtacgtaaaccagggaaaatttgagggtggtggcttatttttccggcc
gi|11 : ttaaagaccgagattttcgaccaccggttcctcaggtaagtTTAGGTGG-GGGCGGAGCC-AATCTTA-TGC-AGGTGTGGAATAGCTGGAGGGAAGC-GTGA-GGGTTTGTGTAT-ACCGTC------CTGGATAACATGGAT--C---TAATCCCCA--G--CC-GTG--------------TCGACG-TTGTCA--TAccgctgcaataacacggtgatttaatttccctgggccttgtttacctgtgttaccatgatttctaacttcaacgttgtcatattagtcaagcatatattgaaagtaaaataactctataaattaaaaaaaaaggaagagtgttttgtgtaaaattagtcaaaattcgtttgatatctaaatcaaaaga
gi|13 : gtcatttgtaggcgaggttttcgacccaccggtctacctaagttaagtTTAGGTGG-GGGCGGAGCC-AATCTTA-TGC-AGGTGTG-AATAGCTGGAGGGAAGC-GTGA-GGGTTTGTGTAT-ACCGTC------CT-GATAACATAGGA--TC--TAATCCCCAG-G--CC-GTG--------------TCGACG-TTGTCA--TAActaaacaagaggccaaaggccttac
gi|14 : catttgtaggctgagattttcgacccatcggtctacctcagttaagtTTAGGTTG-GGGCG-AGCC-AATCAGT-TGC-AGTCGTG-AACAGCTGGAGGGAAGC-GTGA-GGGTTTGTGTAT-ACCGTC------CT--ATAACATGGGA------CAATCCTCAG-G--CC-GTG--------------TCGACGTTTGTCA--TA
gi|15 : gtcatttgtaggccgaggcttttcgacccaccgtctacctcagtaagtTCCAGTCCTAATCCATTGTAAG---CGAA-AAGG-CTCC-TTA-T-GG--CGG-AT--AATCTTTCTCTTACCGA-A-----------TCTTACGCGTGG-----GTA-ATT--AGCTTGTAATACCGC----TGAGACTGTCCAAA-GTACAGAAGGATGTTTAAAA-TTTTCTACCT-GATTGTGAA-CA
gi|18 : TCAAAAATGTTGA-AGTA---AAAC---T-AT-T-T--T-----AA--TTAGGAACCAG---TTAA---AA---ATGTA--AAAAT---TAGAA-TT-GTTTGATTA----------ATT-GTCTGCATGTCGC-G--ATCT-CGACGTCCATAA-CG---CAC
gi|19 : CATGTTAC-GGTATAT-C--CGTCCATGA-CG---CACGG-----TCTGCAC-AAACAGTCTGGACAT-----TCAGC-TCTATA--G-G-TAT--TCCCTCCAT--CA-
gi|2 : aTGTCAATTCAAATTATGTGCTCATTAA-----TTATCTG-ATCGTCGGCCTATTCCTAATCAAAACACTGTTT---AT-G-------ATTT-AATTGGGATGCG-TG-----CCGTGT---T------T-TT--------------G--------------------------TAGTTGGAAGTTTTGGTGTT------TAGCGATTCCGACAATAGATGCGTTACA-AAAGGTCCATAA-TT-TCCGAATCAA-TACTCGTTAGTAC
gi|3 : aattgcggtccctgttG-GGGCGGAGCC-AATCTTA-TGC-AGT--TG-AATAACTGGAGGGCAGCCGTGAAGGGTTTGTGTATTACCGTC------CT-GATAACATGGGA--TCGCTAATCCCCAG-G--C--GTGG-------------TCGACGTT-GTCAAATAAGTCAAAAATGTTGA-AGTAGAAAAAC---TCAT-T-TAAT-----AAAATTGCTAAC-AGAAATTAAGGAAA---ATACATGAAAAT----AGAATTTTGTTTGATTA----------ATTTGTCTGCATGTGGCTG--ACCTGCGACGTCCATAAACG----ACGGTTACATTCGCACGAT--ATCCTGGAC-----------C-TATAT---CAG-CATGGTCGCACTATTTCC-TCGTAC-GACGA--AGGGTGGTTCA-GGA-TTATTCAGATG-CAACTTTCCTCCTGCTCGCAGAAGTCC-GTCC-AGGCCATT-TAGGAGTCGAA-AGGGGCT-CGCTACT-GGTGCGGAGTTAAG--TTTCTCTTTCCGATATAATTAGCGTTGCTA-----TTGCATGTGTATACTTTG-----TA-----GCATGTTG--------CAAAAGTAAAA-----TGTTT-CAATTTTTCTACTA-AATT-TGAAACATGATTCG---------AT----CCTATGTCAATTTAAATTACG---------------CTATC-GTAT------C-TAATGCTAATCAAAACAC--ATTTT-ATGG-------ATTT-AGTTG------AATG-----C-GTGCAACT------T-TT--------------GTTTGTCTACAAAGGCGAAGTTAACAAT--T-----------GTGTC-----AAAGCGA-GCCGACAATAGATGTGTTACGAAAG---CCATAatgtactttcctcttttccgttattaactgatgtcgcggttcaaagtatctgttttatttgattcctgatcacaacaatccatctttaatgcattatagatttgcaactgattaattggtatgtcaattatgttgttcaagtctttatttcgcgaacaattaaacatcttcaagaataggcggtactttcgtcttcgttttaacatcgctattttaatcatttttaattcgtgtaaaactttgcatgtaatttttattcaaatctatattttgcaaacaatacatttgtttctatcaataccttttcggttatcatgcctgtgtactacctgcaggctaagacatcacaaacgattaactcttcacaccttcagcttcgagacaaccgggagtcagaacaggatatgacacggattaggtagctaaacgctcaatcaatttctatcctcctccaatatagaggtaaattgcaaaaatgactgacagcaggctacctagaccagtgtaaatttgagggaggtgggcttatttt
gi|4 : tCAACAATAGATGTATTTCA-AAG---TCATAATTT-TTCT-ATCAA-TGC
gi|5 : tttgttcatttttgggtcaataatgtcgcattgtcaatgacgattacataagattgtgtgatcaataatgccggaaaatcaatactttctctttctaaactcaacgtccgttcaaattatcggtcgttacttattcctaatcacaaacagccgatttacattcattatattttagctgatgtaattttatgtcaatttatatttcgcaacaataaatttattgcaagcataatactgtttcgtcatcagaaatagtcggtactttctcctacttttctctttcgtataaagaaatcaagtattattcaccccaccaagtccttaatcaacaaacccatcataattttattcattttaatttatgttaaactttgcatgttaactttattttaaatcttatttgTTAGGTTG-GGGCG-AGCC-AATCAGT-TGC-AGTCGTG-AACAGCTGGAGGGAAGC-GTGA-GGGTTTGTGTAT-ACCGTC------CT--ATAACATGGGA--C----AATCCTCAG-G--CC-GTG--------------TCGACGTTTGTCA--TAAGTCAAAAATGTTGA-AGTA---AAAC---T-AT-T-T--T-----AA--TTAGGAACCAG---TTAA---AA---ATGTA--AAAAT---TAGAA-TT-GTTTGATTA----------ATT-GTCTGCATGTCGC-G--ATCT-CGACGTCCATAA-CG---CACGG----GTTTGCAC-AT-CTGTCTGGACAT-----CTGATGTATAT---C-G-CAT--TCCTCCTAT--CA-TGGTGCTGACGACGAGGGTGGTTCAAGGATTTAT-CAGATG-CAA-TTTCTTCCTCATC-TAG-AGTCCAGTCC-AATCCATTAT-AG---CGAA-AGGG-GT-C-TTA-TGGG--CGG-GT--AA--TTTCTCTT-CCA--A-----------GCTT-----TCG-----GTA-ACC--A-----TA-----GT----TG--------CAAA-GTAAAAAA--ATGTGTACACTTTTTCTACCT-AAAT-TGAA-CAC-ATTCG--------CAT----CCTATGTCAATTCAAA-TAC----------------CTATC-G-AT------CCTAATCCTAATCAAAACAC--ATT---AT-G-------ATTT-AGTTG------A-TG-----CCGTGCA--T------T-TT--------------G--------------------------T--T-----------GTATT-----ATAGCTA--CCGACAAGAGATGTG-TACG-AAG---CCATAC-TT-TTCT--TCAATTACT-GTCAGTACcatttcgttatcgtgctggggtactacgcggtaagcatcaaaagattttcttcacacctcgctctagacacgaggttgacaaaatatacgcacggattagttactaaatgtcaatcaatttctatcaaatgactgacagtggtacctagtttaggtaaattcgagggcggtggcttatttcctcggtctttaac
gi|6 : CTT-----TCG-----------T--A-----TA-----GC--------------CAAA-GTAAAATG--ATGTTTATAATTTTTCTACCT-ACTT-TGAA-CACGATTCGATCCCTATCATAGGGCCTATGTCAATTCAGATTATGTCCTCAT--------CTATC-G-TA------CCTAATCCTAGTCAAAACAC--ATGCCAATGG-------ATTT-AATTG------A-TG------CGTGTA--T------TATTATCTTTTTTAAAAAG--------------------------T--T-----------TTGTT------TAGCAA-GCCGACAATGGATGAGTTACG-AAG---CCATGA-TTATTCT-ATCAA-TACT-GTCAGAAC
gi|7 : gttcataatgcacattaA-CAC-ATTCG--------CAT----CCTATGTCAATTCAAA-TAC----------------CTATC-G-AT------CCTAATCCTAATCAAAACAC--ATT---AT-G-------ATTT-AGTTG------A-TG-----CCGTGCA--T------T-TT--------------G--------------------------T--T-----------GTATT-----ATAGCTA--CCGACAAGAGATGTG-TACG-AAG---CCATAC-TT-TTCT--TCAATTACT-GTCAGTACgaataacgatggtttggaatacagcataaattaattttgattttgttcatttttgggtcaataatgtcgcattgtcaatgacgattacataagattgtgtgatcaataatgccggaaaatcaatactttctctttctaaactcaacgtccgttcaaattatcggtcgttacttattcctaatcacaaacagccgatttacattcattatattttagctgatgtaattttatgtcaatttatatttcgcaacaataaatttattgcaa
gi|8 : TAGGTGGCGGGCGGAGCCCAATCTTG-TGC-AGT-GTG-A-TAGCTGGCGGAAAGC-GTGA-GGGTT-GTGTAT-ACCGTTTTCCCTCT-GATA-CATGGGA--T---TACTCCCCAA-GGCCC-GTG--------------TCGAC-CTTGTCA--TAAGTCAAAAATGTTAAGAGCA---AAGG---T-ACAT-T--T-----AA--T--------------------AG---ATGTA--AAA-T---TAGA---------GAA-A----------ATT----TGCATGT-GC-G--A-AT-CGACGTCCATAA-CGACGCACGT----G---GCAC-ATGCAGT-TGGACATGTCATCTGAT-TGTATATTC-GGCAT--TCCTCCTAT--CACTGGTCCTGACGA-GAGGGTGGTTCAA-GA-TTAT-C-GATGTCAA-TTTCTTCTCACT---AGAAGT-CAGTCC-CATCCATTATAAG---CGAACAGGG-CT-C-TTA---GG---GG-GT--AA----TCTCTT-CCGATA-----------GC-T-----TCG-----TTG-CCC--A-----T------GT----TG--------CAAA-GTAAA--------TTTACACTTTTTCTACCTAAATT-TGAA-CACGATTTG--------tttctctttctaaattccaatgtctgttgaaattcttcctaatcaaaaacaactatttataaatcattaagctgatgtatatgtcaattattttcacgcttatttcgcaacataaatgtagtgccaaaaccataatatagtttatcattccaagtaatagtcgctactttctctttcgtataaaaaaatcaattgattatcaacaacccatcataatttaaattcattgcaacaatattatgtatttcaaagtcataatttttctatcaccacttctttagccatgctggttactagcggcattataagcttgcaaaaggttttcttcacacctcactcggtcgagaatgacaagaatatacacacg
gi|9 : taacttgTAGGTGG-TGGCGGAGCC-AATCGTA-TGC-AGTTGTG-AATTGCCGGAGGGTAGC-GTGA-GAGCTTGTGTAT-ACCATC------CT-GATAACACGGGGTCT---TAATTACCTGTG--CCGGTGTTACCTGTATTACTTCGATG-TTGTCA--TAAGTAAAAAATGTTGA-AGTA---AAATAAAT-AT-TAT--TGTAAAAA--TTAGGA---AG-----AAT--AATTTATGTA--AAACTAGCCAGAATTT-GTTTGATTAATATCAAAAGATT-GATTGTCTGT-GC-G--A-CT----CGTTCATAA-TG---CAC
5 sequences could not be aligned to this reference sequence:
Unaligned ( gi|12 ): CTAAAACCGAGCTGATTGACCCACTGGTTTACCTCAGGTAGGTTAAGCTGAGGGGTGGAGCTAATTTTACGCAGGCGTGAAGCCCCTGATGGAATCATGCTAGCTTGTGCATACCCTTTAAGATCACGCGGGATTTTATTCGCATTACCTGTATTACCTGTATTACTTCGAAGTTTTCTTTCAAAGTAG
Unaligned ( gi|16 ): ATATTGTCAGATTTTTTCTCTTTCTAAATTCGATGTCTGTTGAAAGTATTTGTCTTACTTATTCCTAATCACAATAACCTATTATAATTCATAAGCTGATGTAATTACATGTCAATTATTTTTCACGTCTTATTTCGCAACAAAT
Unaligned ( gi|17 ): AAGGGAGATAAGATGTACGAAGGACGAGTAACTAAATGTCAATCAATTTAGCATCCAAAAGTGAAGCTTAATTTTTCAAAGATTTACAGGGGTTCACAGAACAGGTAAATTTGAGGGCGGTACTTATTTCCTTGGTCTT
Unaligned ( gi|20 ): ATCAAACGATAATCTTCACACCTCACTCGAGACACAAGGTTTACTAGATATACACACGGATTAGTTACTAAATGTC
Unaligned ( gi|21 ): ATTTAAAGTCCAGGTTTTTCAACCGTGGGTTTTCCTCAGGTAAGTTAAAGTGGA
Alignments
lowQualScore : 111111111111111111111111111111111111111111111111111111111111111111111 111111111111111111111111111111111111111111111111
lowQualScore : 1 111111 11 2222222 33333333333333 1 111 111 444444444444444444444444444444444 111 11 1111 11 3333333333 1 1111 111 33333333 1 1 333333333333 33333 11 11 1 22 11 1 1 1 1 222 1 111 1 1 1 1 222 111 1 11 111 2 222222222222222222222222222222222222222222222222222222222222222222222 222222 1 333333333 1111 666666666666666666666 111111 111 222222222 2222222222222 111111 222222222222222222222222222222222222222222222222 22222222222222 11 1
lowQualScore : 5 2 5 0 5 5 0 5 0 5 5 5 444444 22 6666666 5 77 5 99999999999999 4 77 8 444 444 8 8 8 111111111111111111111111111111111 444 11 5 7777 66 8 0 5555555555 999 3 6 0000 777 6 111 66666666 0 9 2 777777777777 4 44444 33 0 33 0 1 7 00 44 3 3 7 3 3 44 333 7 2 3 0 7 3 777 0 0 0 0 333 666 0 33 777 0 111111111111111111111111111111111111111111111111111111111111111111111 8 999999 0 11 8 8 6 0 111111111 7777 444444444444444444444 6 6 666666 1 77 777 444444444 5 6666666666666 77 666666 5 666666666666666666666666666666666666666666666666 44444444444444 3 5 888 5 5 00 1 8
lowQualScore : . . . . . . . . . . . . ...... .. ....... . .. . .............. . .. . ... ... . . . ................................. ... .. . .... .. . . .......... ... . . .... ... . ... ........ . . . ............ . ..... .. . .. . . . .. .. . . . . . .. ... . . . . . . ... . . . . ... ... . .. ... . ..................................................................... . ...... . .. . . . . ......... .... ..................... . . ...... . .. ... ......... . ............. .. ...... . ................................................ .............. . . ... . . .. . .
lowQualScore : 0 5 0 5 0 0 5 0 2 0 0 0 444444 55 0000000 7 99 7 33333333333333 1 99 0 000 000 0 0 0 666666666666666666666666666666666 000 00 6 8888 22 0 8 0000000000 000 5 7 0000 555 7 777 00000000 0 0 5 222222222222 5 00000 88 2 88 0 0 3 00 00 3 3 3 3 3 33 777 3 5 2 0 0 2 555 0 0 0 0 222 222 0 88 000 0 888888888888888888888888888888888888888888888888888888888888888888888 0 888888 8 44 0 0 7 0 555555555 0000 777777777777777777777 7 7 444444 0 99 999 666666666 7 7777777777777 99 444444 7 000000000000000000000000000000000000000000000000 11111111111111 2 0 888 7 7 77 4 0
consensus : TTAGGTGG-GGGCGGAGCC-AATCTTA-TGC-AGTCGTG-AATAGCTGGAGGGAAGC-GTGA-GGGTTTGTGTAT-ACCGTC------CT-GATAACATGGGA--T---TAATCCCCAG-G--CC-GTG--------------TCGACGTTTGTCA--TAAGTCAAAAATGTTGA-AGTA---AAAC---T-AT-T-T--T-----AA--TTAGGAACCAG---TTAA---AA---ATGTA--AAAAT---TAGAATTT-GTTTGATTA----------ATT-GTCTGCATGTCGC-G--ATCT-CGACGTCCATAA-CG---CACGG----GTTCGCAC-ATGCAGTCTGGACAT-----CCGACTGTATA-N---GCAT--TCCCCCTAT--CA-TGGTNCTGACGA-GAGGGTGGTTCAAGGA-TTAT-CAGATG-CAA-TTTCTTCCCGCTC-CAGAAGTCCAGTCC-AATCCATTATAAG---CGAA-AGGG-CT-C-TTA-T-GG--CGG-GT--AA--TTTCTCTT-CCGATA-----------GCTT-----TCG-----GTA-ACT--A-----TA-----GC----TG--------CAAA-GTAAAAAA--ATGTTTACAATTTTTCTACCT-AATT-TGAA-CACGATTCG--------CAT----CCTATGTCAATTCAAATTATGT-CTCAT------C---TATC-G-ATC------CTANTCCTAATCAAAACACA--TT---ATGG-------ATTT-AGTTGA------TG-----CCGTGCA--T------T-TT--------------GT-------------------------TT---G-TGTT-----ATAGCGAG-CCGACAATAGATGTGTTACG-AAG---CCATAA-TT-TTCT-ATCAA-TACT-GTCAGTAC
Reference ( family-2679 ) : TTAGGTGG-GGGCGGAGCC-AATCTTA-TGC-AGTCGTG-AATAGCTGGAGGGAAGC-GTGA-GGGTTTGTGTAT-ACCGTC------CT-GATAACATGGGA--T---TAATCCCCAG-G--CC-GTG--------------TCGACGTTTGTCA--TAAGTCAAAAATGTTGA-AGTA---AAAC---T-AT-T-T--T-----AA--TTAGGAACCAG---TTAA---AA---ATGTA--AAAAT---TAGAATTT-GTTTGATTA----------ATT-GTCTGCATGTCGC-G--ATCT-CGACGTCCATAA-CG---CACGG----GTTCGCAC-ATGCAGTCTGGACAT-----CCGACTATATA-C---GCAT--TCCCCCTAT--CA-TGGTNCTGACGA-GAGGGTGGTTCAAGGA-TTAT-CAGATG-CAA-TTTCTTCCCGCTC-CAGAAGTCCAGTCC-AATCCATTATAAG---CGAA-AGGG-CT-C-TTA-T-GG--CGG-GT--AA--TTTCTCTT-CCGATA-----------GCTT-----TCG-----GTA-ACT--A-----TA-----GC----TG--------CAAA-GTAAAAAA--ATGTTTACAATTTTTCTACCT-AATT-TGAA-CACGATTCG--------CAT----CCTATGTCAATTCAAATTACGT-CTCAT------C---TATC-G-ATC------CTANTCCTAATCAAAACACA--TT---ATGG-------ATTT-AGTTGA------TG-----CCGTGCA--T------T-TT--------------GT-------------------------TT---G-TGTT-----ATAGCGAG-CCGACAATAGATGTGTTACG-AAG---CCATAA-TT-TTCT-ATCAA-TACT-GTCAGTAC
gi|1 : ----CCTATGTCAATTGAAATTATGTACTCATAATTATC---TATC-G-TAC------CTATTCCTAATCAAAACACA--TT---ATGA-------ATTT-AATTGA------C------TCATGTA--T------T-TT--------------TT-------------------------TTTT-A-TGTTTTGAAGTATTGTG-CCGACAATAGATGTGTTACA-GAA---CCATTA-TT-TCCT-ATCAA-TACT-GTCAGTAC
gi|1 : tttccggtcC------CTATTCCTGATCACAACCCA--TC---ATGATTTATTAATTTTAATTGA------TGTAAAACTTTGTA--TGTTAACT-TC--------------AT-------------------------TTCAAA-TCTT-----AT-TTG----CAACAATAGATGTATTACA-AAG---TCATCA-TT----T-ATCAA-TAtttctcttttcgtataaactcgatatccgttcaaattatctgttgtactatatctatcacaacaaccctaatcatatattttaactgatgtaattgtatgttcaattatttttcaagtcttatttcgcaactaattatgtattgcaaagccatgatattaatactgcttcatcttcaagaatagtcgaactttctctttcgtataaaaatcaaatttttcctcgccacctattcctgatcacaacccatcatgatttattaattttaattgatgtaaaactttgtatgttaacttcatttcaaatcttatttgcaacaatagatgtattacaaagtcatcatttatcaataatattactttatcatgctggtatactacatggtaagcatcaaaagattttcttcatgcctcgatcgagacaaaaggttgacaggatacacacgcagattagttactaaatgtcaatcaatttctatcatccaatataaaggtaagttgcaaatgactgacagtggtacgtaaaccagggaaaatttgagggtggtggcttatttttccggcc
gi|10 : tttccggtccctatgtcaattgaaattatgtactcataattatctatcgtacctattcctaatcaaaacacattatgaatttaattgactcatgtattttttttttatgttttgaagtattgtgccgacaatagatgtgttacagaaccattatttcctatcaatactgtcagtactttctcttttcgtataaactcgatatccgttcaaattatctgttgtactatatctatcacaacaaccctaatcatatattttaactgatgtaattgtatgttcaattatttttcaagtcttatttcgcaactaattatgtattgcaaagccatgatattaatactgcttcatcttcaagaatagtcgaactttctctttcgtataaaaatcaaatttttcctcgccaTTAGATGG-GGTTGGAGCT-AATTTTAATGCGAGGTGTG-AATTGCTGGAGAGCAGT-G-GA-GAGCTTGTGTAT-ACCGTC------CTCGATAACAatattactttatcatgctggtatactacatggtaagcatcaaaagattttcttcatgcctcgatcgagacaaaaggttgacaggatacacacgcagattagttactaaatgtcaatcaatttctatcatccaatataaaggtaagttgcaaatgactgacagtggtacgtaaaccagggaaaatttgagggtggtggcttatttttccggcc
gi|11 : ttaaagaccgagattttcgaccaccggttcctcaggtaagtTTAGGTGG-GGGCGGAGCC-AATCTTA-TGC-AGGTGTGGAATAGCTGGAGGGAAGC-GTGA-GGGTTTGTGTAT-ACCGTC------CTGGATAACATGGAT--C---TAATCCCCA--G--CC-GTG--------------TCGACG-TTGTCA--TAccgctgcaataacacggtgatttaatttccctgggccttgtttacctgtgttaccatgatttctaacttcaacgttgtcatattagtcaagcatatattgaaagtaaaataactctataaattaaaaaaaaaggaagagtgttttgtgtaaaattagtcaaaattcgtttgatatctaaatcaaaaga
gi|13 : gtcatttgtaggcgaggttttcgacccaccggtctacctaagttaagtTTAGGTGG-GGGCGGAGCC-AATCTTA-TGC-AGGTGTG-AATAGCTGGAGGGAAGC-GTGA-GGGTTTGTGTAT-ACCGTC------CT-GATAACATAGGA--TC--TAATCCCCAG-G--CC-GTG--------------TCGACG-TTGTCA--TAActaaacaagaggccaaaggccttac
gi|14 : catttgtaggctgagattttcgacccatcggtctacctcagttaagtTTAGGTTG-GGGCG-AGCC-AATCAGT-TGC-AGTCGTG-AACAGCTGGAGGGAAGC-GTGA-GGGTTTGTGTAT-ACCGTC------CT--ATAACATGGGA------CAATCCTCAG-G--CC-GTG--------------TCGACGTTTGTCA--TA
gi|15 : gtcatttgtaggccgaggcttttcgacccaccgtctacctcagtaagtTCCAGTCCTAATCCATTGTAAG---CGAA-AAGG-CTCC-TTA-T-GG--CGG-AT--AATCTTTCTCTTACCGA-A-----------TCTTACGCGTGG-----GTA-ATT--AGCTTGTAATACCGC----TGAGACTGTCCAAA-GTACAGAAGGATGTTTAAAA-TTTTCTACCT-GATTGTGAA-CA
gi|18 : TCAAAAATGTTGA-AGTA---AAAC---T-AT-T-T--T-----AA--TTAGGAACCAG---TTAA---AA---ATGTA--AAAAT---TAGAA-TT-GTTTGATTA----------ATT-GTCTGCATGTCGC-G--ATCT-CGACGTCCATAA-CG---CAC
gi|19 : CATGTTAC-GGTATAT-C--CGTCCATGA-CG---CACGG-----TCTGCAC-AAACAGTCTGGACAT-----TCAGCTCTATA-G---GTAT--TCCCTCCAT--CA-
gi|2 : aTGTCAATTCAAATTATGTGCTCAT------TAATTATCTG-ATCGTCGGCCTATTCCTAATCAAAACACTGTTT---ATG--------ATTT-AATTGGGATGCGTG-----CCGTGT---T------T-TT--------------GTAGTTGGAAGTT--------------TT---GGTGTT------TAGCGATTCCGACAATAGATGCGTTACA-AAAGGTCCATAA-TT-TCCGAATCAA-TACTCGTTAGTAC
gi|3 : aattgcggtccctgttG-GGGCGGAGCC-AATCTTA-TGC-AGT--TG-AATAACTGGAGGGCAGCCGTGAAGGGTTTGTGTATTACCGTC------CT-GATAACATGGGA--TCGCTAATCCCCAG-G--C--GTGG-------------TCGACGTT-GTCAAATAAGTCAAAAATGTTGA-AGTAGAAAAAC---TCAT-T-TAAT-----AAAATTGCTAAC-AGAAATTAAGGAAA---ATACATGAAAAT----AGAATTTTGTTTGATTA----------ATTTGTCTGCATGTGGCTG--ACCTGCGACGTCCATAAACG----ACGGTTACATTCGCACGAT--ATCCTGGAC-----------CTATATC-A---GCATGGTCGCACTATTTCC-TCGTAC-GACGA--AGGGTGGTTCA-GGA-TTATTCAGATG-CAACTTTCCTCCTGCTCGCAGAAGTCC-GTCC-AGGCCATT-TAGGAGTCGAA-AGGGGCT-CGCTACT-GGTGCGGAGTTAAG--TTTCTCTTTCCGATATAATTAGCGTTGCTA-----TTGCATGTGTATACTTTG-----TA-----GCATGTTG--------CAAAAGTAAAA-----TGTTT-CAATTTTTCTACTA-AATT-TGAAACATGATTCG---------AT----CCTATGTCAATTTAAATTACG-------------C---TATC-GTATC-------TAATGCTAATCAAAACACA--TTTT-ATGG-------ATTT-AGTTGAA-----TG-----C-GTGCAACT------T-TT--------------GTTTGTCTACAAAGGCGAAGTTAACAATT---G-TGTC-----AAAGCGAG-CCGACAATAGATGTGTTACGAAAG---CCATAatgtactttcctcttttccgttattaactgatgtcgcggttcaaagtatctgttttatttgattcctgatcacaacaatccatctttaatgcattatagatttgcaactgattaattggtatgtcaattatgttgttcaagtctttatttcgcgaacaattaaacatcttcaagaataggcggtactttcgtcttcgttttaacatcgctattttaatcatttttaattcgtgtaaaactttgcatgtaatttttattcaaatctatattttgcaaacaatacatttgtttctatcaataccttttcggttatcatgcctgtgtactacctgcaggctaagacatcacaaacgattaactcttcacaccttcagcttcgagacaaccgggagtcagaacaggatatgacacggattaggtagctaaacgctcaatcaatttctatcctcctccaatatagaggtaaattgcaaaaatgactgacagcaggctacctagaccagtgtaaatttgagggaggtgggcttatttt
gi|4 : tCAACAATAGATGTATTTCA-AAG---TCATAATTT-TTCT-ATCAA-TGC
gi|5 : tttgttcatttttgggtcaataatgtcgcattgtcaatgacgattacataagattgtgtgatcaataatgccggaaaatcaatactttctctttctaaactcaacgtccgttcaaattatcggtcgttacttattcctaatcacaaacagccgatttacattcattatattttagctgatgtaattttatgtcaatttatatttcgcaacaataaatttattgcaagcataatactgtttcgtcatcagaaatagtcggtactttctcctacttttctctttcgtataaagaaatcaagtattattcaccccaccaagtccttaatcaacaaacccatcataattttattcattttaatttatgttaaactttgcatgttaactttattttaaatcttatttgTTAGGTTG-GGGCG-AGCC-AATCAGT-TGC-AGTCGTG-AACAGCTGGAGGGAAGC-GTGA-GGGTTTGTGTAT-ACCGTC------CT--ATAACATGGGA--C----AATCCTCAG-G--CC-GTG--------------TCGACGTTTGTCA--TAAGTCAAAAATGTTGA-AGTA---AAAC---T-AT-T-T--T-----AA--TTAGGAACCAG---TTAA---AA---ATGTA--AAAAT---TAGAA-TT-GTTTGATTA----------ATT-GTCTGCATGTCGC-G--ATCT-CGACGTCCATAA-CG---CACGG----GTTTGCAC-AT-CTGTCTGGACAT-----CTGA-TGTATATC---GCAT--TCCTCCTAT--CA-TGGTGCTGACGACGAGGGTGGTTCAAGGATTTAT-CAGATG-CAA-TTTCTTCCTCATC-TAG-AGTCCAGTCC-AATCCATTAT-AG---CGAA-AGGG-GT-C-TTA-TGGG--CGG-GT--AA--TTTCTCTT-CCA--A-----------GCTT-----TCG-----GTA-ACC--A-----TA-----GT----TG--------CAAA-GTAAAAAA--ATGTGTACACTTTTTCTACCT-AAAT-TGAA-CAC-ATTCG--------CAT----CCTATGTCAATTCAAAT---------AC------C---TATC-G-ATC------CTAATCCTAATCAAAACACA--TT---AT-G-------ATTT-AGTTGA------TG-----CCGTGCA--T------T-TT--------------G--------------------------TT---G-TATT-----ATAGCTA--CCGACAAGAGATGTG-TACG-AAG---CCATAC-TT-TTCT--TCAATTACT-GTCAGTACcatttcgttatcgtgctggggtactacgcggtaagcatcaaaagattttcttcacacctcgctctagacacgaggttgacaaaatatacgcacggattagttactaaatgtcaatcaatttctatcaaatgactgacagtggtacctagtttaggtaaattcgagggcggtggcttatttcctcggtctttaac
gi|6 : CTT-----TCG-----------T--A-----TA-----GC--------------CAAA-GTAAAATG--ATGTTTATAATTTTTCTACCT-ACTT-TGAA-CACGATTCGATCCCTATCATAGGGCCTATGTCAATTCAGATTATGTCCTCAT------C---TATC-G-TAC------CTAATCCTAGTCAAAACACA--TGCCAATGG-------ATTT-AATTGA------TG------CGTGTA--T------TATTATCTTTTTTAAAAAGT-------------------------TT-----TGTT------TAGCAAG-CCGACAATGGATGAGTTACG-AAG---CCATGA-TTATTCT-ATCAA-TACT-GTCAGAAC
gi|7 : gttcataatgcacattaA-CAC-ATTCG--------CAT----CCTATGTCAATTCAAAT---------AC------C---TATC-G-ATC------CTAATCCTAATCAAAACACA--TT---AT-G-------ATTT-AGTTGA------TG-----CCGTGCA--T------T-TT--------------G--------------------------TT---G-TATT-----ATAGCTA--CCGACAAGAGATGTG-TACG-AAG---CCATAC-TT-TTCT--TCAATTACT-GTCAGTACgaataacgatggtttggaatacagcataaattaattttgattttgttcatttttgggtcaataatgtcgcattgtcaatgacgattacataagattgtgtgatcaataatgccggaaaatcaatactttctctttctaaactcaacgtccgttcaaattatcggtcgttacttattcctaatcacaaacagccgatttacattcattatattttagctgatgtaattttatgtcaatttatatttcgcaacaataaatttattgcaa
gi|8 : TAGGTGGCGGGCGGAGCCCAATCTTG-TGC-AGT-GTG-A-TAGCTGGCGGAAAGC-GTGA-GGGTT-GTGTAT-ACCGTTTTCCCTCT-GATA-CATGGGA--T---TACTCCCCAA-GGCCC-GTG--------------TCGAC-CTTGTCA--TAAGTCAAAAATGTTAAGAGCA---AAGG---T-ACAT-T--T-----AA--T--------------------AG---ATGTA--AAA-T---TAGA---------GAA-A----------ATT----TGCATGT-GC-G--A-AT-CGACGTCCATAA-CGACGCACGT----G---GCAC-ATGCAGT-TGGACATGTCATCTGATTGTATA-TTCGGCAT--TCCTCCTAT--CACTGGTCCTGACGA-GAGGGTGGTTCAA-GA-TTAT-C-GATGTCAA-TTTCTTCTCACT---AGAAGT-CAGTCC-CATCCATTATAAG---CGAACAGGG-CT-C-TTA---GG---GG-GT--AA----TCTCTT-CCGATA-----------GC-T-----TCG-----TTG-CCC--A-----T------GT----TG--------CAAA-GTAAA--------TTTACACTTTTTCTACCTAAATT-TGAA-CACGATTTG--------tttctctttctaaattccaatgtctgttgaaattcttcctaatcaaaaacaactatttataaatcattaagctgatgtatatgtcaattattttcacgcttatttcgcaacataaatgtagtgccaaaaccataatatagtttatcattccaagtaatagtcgctactttctctttcgtataaaaaaatcaattgattatcaacaacccatcataatttaaattcattgcaacaatattatgtatttcaaagtcataatttttctatcaccacttctttagccatgctggttactagcggcattataagcttgcaaaaggttttcttcacacctcactcggtcgagaatgacaagaatatacacacg
gi|9 : taacttgTAGGTGG-TGGCGGAGCC-AATCGTA-TGC-AGTTGTG-AATTGCCGGAGGGTAGC-GTGA-GAGCTTGTGTAT-ACCATC------CT-GATAACACGGGGTCT---TAATTACCTGTG--CCGGTGTTACCTGTATTACTTCGATG-TTGTCA--TAAGTAAAAAATGTTGA-AGTA---AAATAAAT-AT-TAT--TGTAAAAA--TTAGGA---AG-----AAT--AATTTATGTA--AAACTAGCCAGAATTT-GTTTGATTAATATCAAAAGATT-GATTGTCTGT-GC-G--A-CT----CGTTCATAA-TG---CAC
5 sequences could not be aligned to this reference sequence:
Unaligned ( gi|12 ): CTAAAACCGAGCTGATTGACCCACTGGTTTACCTCAGGTAGGTTAAGCTGAGGGGTGGAGCTAATTTTACGCAGGCGTGAAGCCCCTGATGGAATCATGCTAGCTTGTGCATACCCTTTAAGATCACGCGGGATTTTATTCGCATTACCTGTATTACCTGTATTACTTCGAAGTTTTCTTTCAAAGTAG
Unaligned ( gi|16 ): ATATTGTCAGATTTTTTCTCTTTCTAAATTCGATGTCTGTTGAAAGTATTTGTCTTACTTATTCCTAATCACAATAACCTATTATAATTCATAAGCTGATGTAATTACATGTCAATTATTTTTCACGTCTTATTTCGCAACAAAT
Unaligned ( gi|17 ): AAGGGAGATAAGATGTACGAAGGACGAGTAACTAAATGTCAATCAATTTAGCATCCAAAAGTGAAGCTTAATTTTTCAAAGATTTACAGGGGTTCACAGAACAGGTAAATTTGAGGGCGGTACTTATTTCCTTGGTCTT
Unaligned ( gi|20 ): ATCAAACGATAATCTTCACACCTCACTCGAGACACAAGGTTTACTAGATATACACACGGATTAGTTACTAAATGTC
Unaligned ( gi|21 ): ATTTAAAGTCCAGGTTTTTCAACCGTGGGTTTTCCTCAGGTAAGTTAAAGTGGA
Alignments
lowQualScore : 111111111111111111111111111111111111111111111111111111111111111111111 111111111111111111111111111111111111111111111111
lowQualScore : 1 111111 11 2222222 33333333333333 1 111 111 444444444444444444444444444444444 111 11 1111 11 3333333333 1 1111 111 33333333 1 1 333333333333 22222 11 11 1 22 11 1 1 1 1 222 1 111 1 1 1 1 222 111 1 11 111 2 222222222222222222222222222222222222222222222222222222222222222222222 222222 1 333333333 1111 555555555555555555555 111111 111 222222222 2222222222222 111111 222222222222222222222222222222222222222222222222 22222222222222 11 1
lowQualScore : 5 2 5 0 5 5 0 5 0 5 5 5 444444 22 6666666 5 77 5 99999999999999 4 77 8 444 444 8 8 8 111111111111111111111111111111111 444 11 5 7777 66 8 0 5555555555 999 3 6 0000 777 6 111 66666666 0 9 2 777777777777 0 88888 33 0 33 0 1 7 00 44 3 3 7 3 3 44 333 7 2 3 0 7 3 777 0 0 0 0 333 666 0 33 777 0 111111111111111111111111111111111111111111111111111111111111111111111 8 999999 0 11 8 8 6 0 111111111 7777 000000000000000000000 5 999 666666 1 77 777 444444444 5 6666666666666 77 666666 5 666666666666666666666666666666666666666666666666 44444444444444 3 5 888 5 5 00 1 8
lowQualScore : . . . . . . . . . . . . ...... .. ....... . .. . .............. . .. . ... ... . . . ................................. ... .. . .... .. . . .......... ... . . .... ... . ... ........ . . . ............ . ..... .. . .. . . . .. .. . . . . . .. ... . . . . . . ... . . . . ... ... . .. ... . ..................................................................... . ...... . .. . . . . ......... .... ..................... . ... ...... . .. ... ......... . ............. .. ...... . ................................................ .............. . . ... . . .. . .
lowQualScore : 0 5 0 5 0 0 5 0 2 0 0 0 444444 55 0000000 7 99 7 33333333333333 1 99 0 000 000 0 0 0 666666666666666666666666666666666 000 00 6 8888 22 0 8 0000000000 000 5 7 0000 555 7 777 00000000 0 0 5 222222222222 2 55555 88 2 88 0 0 3 00 00 3 3 3 3 3 33 777 3 5 2 0 0 2 555 0 0 0 0 222 222 0 88 000 0 888888888888888888888888888888888888888888888888888888888888888888888 0 888888 8 44 0 0 7 0 555555555 0000 333333333333333333333 7 666 444444 0 99 999 666666666 7 7777777777777 99 444444 7 000000000000000000000000000000000000000000000000 11111111111111 2 0 888 7 7 77 4 0
consensus : TTAGGTGG-GGGCGGAGCC-AATCTTA-TGC-AGTCGTG-AATAGCTGGAGGGAAGC-GTGA-GGGTTTGTGTAT-ACCGTC------CT-GATAACATGGGA--T---TAATCCCCAG-G--CC-GTG--------------TCGACGTTTGTCA--TAAGTCAAAAATGTTGA-AGTA---AAAC---T-AT-T-T--T-----AA--TTAGGAACCAG---TTAA---AA---ATGTA--AAAAT---TAGAATTT-GTTTGATTA----------ATT-GTCTGCATGTCGC-G--ATCT-CGACGTCCATAA-CG---CACGG----GTTCGCAC-ATGCAGTCTGGACAT-----CCGACTGTATA-N---GCAT--TCCCCCTAT--CA-TGGTNCTGACGA-GAGGGTGGTTCAAGGA-TTAT-CAGATG-CAA-TTTCTTCCCGCTC-CAGAAGTCCAGTCC-AATCCATTATAAG---CGAA-AGGG-CT-C-TTA-T-GG--CGG-GT--AA--TTTCTCTT-CCGATA-----------GCTT-----TCG-----GTA-ACT--A-----TA-----GC----TG--------CAAA-GTAAAAAA--ATGTTTACAATTTTTCTACCT-AATT-TGAA-CACGATTCG--------CAT----CCTATGTCAATTCAAATTATGT-CTCAC------C---TATC-G-ATC------CTANTCCTAATCAAAACACA--TT---ATGG-------ATTT-AGTTGA------TG-----CCGTGCA--T------T-TT--------------GT-------------------------TT---G-TGTT-----ATAGCGAG-CCGACAATAGATGTGTTACG-AAG---CCATAA-TT-TTCT-ATCAA-TACT-GTCAGTAC
Reference ( family-2679 ) : TTAGGTGG-GGGCGGAGCC-AATCTTA-TGC-AGTCGTG-AATAGCTGGAGGGAAGC-GTGA-GGGTTTGTGTAT-ACCGTC------CT-GATAACATGGGA--T---TAATCCCCAG-G--CC-GTG--------------TCGACGTTTGTCA--TAAGTCAAAAATGTTGA-AGTA---AAAC---T-AT-T-T--T-----AA--TTAGGAACCAG---TTAA---AA---ATGTA--AAAAT---TAGAATTT-GTTTGATTA----------ATT-GTCTGCATGTCGC-G--ATCT-CGACGTCCATAA-CG---CACGG----GTTCGCAC-ATGCAGTCTGGACAT-----CCGACTGTATA-N---GCAT--TCCCCCTAT--CA-TGGTNCTGACGA-GAGGGTGGTTCAAGGA-TTAT-CAGATG-CAA-TTTCTTCCCGCTC-CAGAAGTCCAGTCC-AATCCATTATAAG---CGAA-AGGG-CT-C-TTA-T-GG--CGG-GT--AA--TTTCTCTT-CCGATA-----------GCTT-----TCG-----GTA-ACT--A-----TA-----GC----TG--------CAAA-GTAAAAAA--ATGTTTACAATTTTTCTACCT-AATT-TGAA-CACGATTCG--------CAT----CCTATGTCAATTCAAATTATGT-CTCAT------C---TATC-G-ATC------CTANTCCTAATCAAAACACA--TT---ATGG-------ATTT-AGTTGA------TG-----CCGTGCA--T------T-TT--------------GT-------------------------TT---G-TGTT-----ATAGCGAG-CCGACAATAGATGTGTTACG-AAG---CCATAA-TT-TTCT-ATCAA-TACT-GTCAGTAC
gi|1 : ----CCTATGTCAATTGAAATTATGTACTCATAATTATC---TATC-G-TAC------CTATTCCTAATCAAAACACA--TT---ATGA-------ATTT-AATTGA------C------TCATGTA--T------T-TT--------------TT-------------------------TTTT-A-TGTTTTGAAGTATTGTG-CCGACAATAGATGTGTTACA-GAA---CCATTA-TT-TCCT-ATCAA-TACT-GTCAGTAC
gi|1 : tttccggtcAAATCAAATTTTTC-CTCGC------C----------A-C------CTATTCCTGATCACAACCCA--TC---ATGATTTATTAATTTTAATTGA------TGTAAAACTTTGTA--TGTTAACT-TC--------------AT-------------------------TTCAAA-TCTT-----AT-TTG----CAACAATAGATGTATTACA-AAG---TCATCA-TT----T-ATCAA-TAtttctcttttcgtataaactcgatatccgttcaaattatctgttgtactatatctatcacaacaaccctaatcatatattttaactgatgtaattgtatgttcaattatttttcaagtcttatttcgcaactaattatgtattgcaaagccatgatattaatactgcttcatcttcaagaatagtcgaactttctctttcgtataaaaatcaaatttttcctcgccacctattcctgatcacaacccatcatgatttattaattttaattgatgtaaaactttgtatgttaacttcatttcaaatcttatttgcaacaatagatgtattacaaagtcatcatttatcaataatattactttatcatgctggtatactacatggtaagcatcaaaagattttcttcatgcctcgatcgagacaaaaggttgacaggatacacacgcagattagttactaaatgtcaatcaatttctatcatccaatataaaggtaagttgcaaatgactgacagtggtacgtaaaccagggaaaatttgagggtggtggcttatttttccggcc
gi|10 : tttccggtccctatgtcaattgaaattatgtactcataattatctatcgtacctattcctaatcaaaacacattatgaatttaattgactcatgtattttttttttatgttttgaagtattgtgccgacaatagatgtgttacagaaccattatttcctatcaatactgtcagtactttctcttttcgtataaactcgatatccgttcaaattatctgttgtactatatctatcacaacaaccctaatcatatattttaactgatgtaattgtatgttcaattatttttcaagtcttatttcgcaactaattatgtattgcaaagccatgatattaatactgcttcatcttcaagaatagtcgaactttctctttcgtataaTTAGATGG-GGTTGGAGCT-AATTTTAATGCGAGGTGTG-AATTGCTGGAGAGCAGT-G-GA-GAGCTTGTGTAT-ACCGTC------CTCGATAACAatattactttatcatgctggtatactacatggtaagcatcaaaagattttcttcatgcctcgatcgagacaaaaggttgacaggatacacacgcagattagttactaaatgtcaatcaatttctatcatccaatataaaggtaagttgcaaatgactgacagtggtacgtaaaccagggaaaatttgagggtggtggcttatttttccggcc
gi|11 : ttaaagaccgagattttcgaccaccggttcctcaggtaagtTTAGGTGG-GGGCGGAGCC-AATCTTA-TGC-AGGTGTGGAATAGCTGGAGGGAAGC-GTGA-GGGTTTGTGTAT-ACCGTC------CTGGATAACATGGAT--C---TAATCCCCA--G--CC-GTG--------------TCGACG-TTGTCA--TAccgctgcaataacacggtgatttaatttccctgggccttgtttacctgtgttaccatgatttctaacttcaacgttgtcatattagtcaagcatatattgaaagtaaaataactctataaattaaaaaaaaaggaagagtgttttgtgtaaaattagtcaaaattcgtttgatatctaaatcaaaaga
gi|13 : gtcatttgtaggcgaggttttcgacccaccggtctacctaagttaagtTTAGGTGG-GGGCGGAGCC-AATCTTA-TGC-AGGTGTG-AATAGCTGGAGGGAAGC-GTGA-GGGTTTGTGTAT-ACCGTC------CT-GATAACATAGGA--TC--TAATCCCCAG-G--CC-GTG--------------TCGACG-TTGTCA--TAActaaacaagaggccaaaggccttac
gi|14 : catttgtaggctgagattttcgacccatcggtctacctcagttaagtTTAGGTTG-GGGCG-AGCC-AATCAGT-TGC-AGTCGTG-AACAGCTGGAGGGAAGC-GTGA-GGGTTTGTGTAT-ACCGTC------CT--ATAACATGGGA------CAATCCTCAG-G--CC-GTG--------------TCGACGTTTGTCA--TA
gi|15 : gtcatttgtaggccgaggcttttcgacccaccgtctacctcagtaagtTCCAGTCCTAATCCATTGTAAG---CGAA-AAGG-CTCC-TTA-T-GG--CGG-AT--AATCTTTCTCTTACCGA-A-----------TCTTACGCGTGG-----GTA-ATT--AGCTTGTAATACCGC----TGAGACTGTCCAAA-GTACAGAAGGATGTTTAAAA-TTTTCTACCT-GATTGTGAA-CA
gi|18 : TCAAAAATGTTGA-AGTA---AAAC---T-AT-T-T--T-----AA--TTAGGAACCAG---TTAA---AA---ATGTA--AAAAT---TAGAA-TT-GTTTGATTA----------ATT-GTCTGCATGTCGC-G--ATCT-CGACGTCCATAA-CG---CAC
gi|19 : CATGTTAC-GGTATAT-C--CGTCCATGA-CG---CACGG-----TCTGCAC-AAACAGTCTGGACAT-----TCAGCTCTATA-G---GTAT--TCCCTCCAT--CA-
gi|2 : aTGTCAATTCAAATTATGTGCTCAT------TAATTATCTG-ATCGTCGGCCTATTCCTAATCAAAACACTGTTT---ATG--------ATTT-AATTGGGATGCGTG-----CCGTGT---T------T-TT--------------GTAGTTGGAAGTT--------------TT---GGTGTT------TAGCGATTCCGACAATAGATGCGTTACA-AAAGGTCCATAA-TT-TCCGAATCAA-TACTCGTTAGTAC
gi|3 : aattgcggtccctgttG-GGGCGGAGCC-AATCTTA-TGC-AGT--TG-AATAACTGGAGGGCAGCCGTGAAGGGTTTGTGTATTACCGTC------CT-GATAACATGGGA--TCGCTAATCCCCAG-G--C--GTGG-------------TCGACGTT-GTCAAATAAGTCAAAAATGTTGA-AGTAGAAAAAC---TCAT-T-TAAT-----AAAATTGCTAAC-AGAAATTAAGGAAA---ATACATGAAAAT----AGAATTTTGTTTGATTA----------ATTTGTCTGCATGTGGCTG--ACCTGCGACGTCCATAAACG----ACGGTTACATTCGCACGAT--ATCCTGGAC-----------CTATATC-A---GCATGGTCGCACTATTTCC-TCGTAC-GACGA--AGGGTGGTTCA-GGA-TTATTCAGATG-CAACTTTCCTCCTGCTCGCAGAAGTCC-GTCC-AGGCCATT-TAGGAGTCGAA-AGGGGCT-CGCTACT-GGTGCGGAGTTAAG--TTTCTCTTTCCGATATAATTAGCGTTGCTA-----TTGCATGTGTATACTTTG-----TA-----GCATGTTG--------CAAAAGTAAAA-----TGTTT-CAATTTTTCTACTA-AATT-TGAAACATGATTCG---------AT----CCTATGTCAATTTAAATTACG-------------C---TATC-GTATC-------TAATGCTAATCAAAACACA--TTTT-ATGG-------ATTT-AGTTGAA-----TG-----C-GTGCAACT------T-TT--------------GTTTGTCTACAAAGGCGAAGTTAACAATT---G-TGTC-----AAAGCGAG-CCGACAATAGATGTGTTACGAAAG---CCATAatgtactttcctcttttccgttattaactgatgtcgcggttcaaagtatctgttttatttgattcctgatcacaacaatccatctttaatgcattatagatttgcaactgattaattggtatgtcaattatgttgttcaagtctttatttcgcgaacaattaaacatcttcaagaataggcggtactttcgtcttcgttttaacatcgctattttaatcatttttaattcgtgtaaaactttgcatgtaatttttattcaaatctatattttgcaaacaatacatttgtttctatcaataccttttcggttatcatgcctgtgtactacctgcaggctaagacatcacaaacgattaactcttcacaccttcagcttcgagacaaccgggagtcagaacaggatatgacacggattaggtagctaaacgctcaatcaatttctatcctcctccaatatagaggtaaattgcaaaaatgactgacagcaggctacctagaccagtgtaaatttgagggaggtgggcttatttt
gi|4 : tCAACAATAGATGTATTTCA-AAG---TCATAATTT-TTCT-ATCAA-TGC
gi|5 : tttgttcatttttgggtcaataatgtcgcattgtcaatgacgattacataagattgtgtgatcaataatgccggaaaatcaatactttctctttctaaactcaacgtccgttcaaattatcggtcgttacttattcctaatcacaaacagccgatttacattcattatattttagctgatgtaattttatgtcaatttatatttcgcaacaataaatttattgcaagcataatactgtttcgtcatcagaaatagtcggtactttctcctacttttctctttcgtataaagaaatcaagtattattcaccccaccaagtccttaatcaacaaacccatcataattttattcattttaatttatgttaaactttgcatgttaactttattttaaatcttatttgTTAGGTTG-GGGCG-AGCC-AATCAGT-TGC-AGTCGTG-AACAGCTGGAGGGAAGC-GTGA-GGGTTTGTGTAT-ACCGTC------CT--ATAACATGGGA--C----AATCCTCAG-G--CC-GTG--------------TCGACGTTTGTCA--TAAGTCAAAAATGTTGA-AGTA---AAAC---T-AT-T-T--T-----AA--TTAGGAACCAG---TTAA---AA---ATGTA--AAAAT---TAGAA-TT-GTTTGATTA----------ATT-GTCTGCATGTCGC-G--ATCT-CGACGTCCATAA-CG---CACGG----GTTTGCAC-AT-CTGTCTGGACAT-----CTGA-TGTATATC---GCAT--TCCTCCTAT--CA-TGGTGCTGACGACGAGGGTGGTTCAAGGATTTAT-CAGATG-CAA-TTTCTTCCTCATC-TAG-AGTCCAGTCC-AATCCATTAT-AG---CGAA-AGGG-GT-C-TTA-TGGG--CGG-GT--AA--TTTCTCTT-CCA--A-----------GCTT-----TCG-----GTA-ACC--A-----TA-----GT----TG--------CAAA-GTAAAAAA--ATGTGTACACTTTTTCTACCT-AAAT-TGAA-CAC-ATTCG--------CAT----CCTATGTCAATTCAAAT---------AC------C---TATC-G-ATC------CTAATCCTAATCAAAACACA--TT---AT-G-------ATTT-AGTTGA------TG-----CCGTGCA--T------T-TT--------------G--------------------------TT---G-TATT-----ATAGCTA--CCGACAAGAGATGTG-TACG-AAG---CCATAC-TT-TTCT--TCAATTACT-GTCAGTACcatttcgttatcgtgctggggtactacgcggtaagcatcaaaagattttcttcacacctcgctctagacacgaggttgacaaaatatacgcacggattagttactaaatgtcaatcaatttctatcaaatgactgacagtggtacctagtttaggtaaattcgagggcggtggcttatttcctcggtctttaac
gi|6 : CTT-----TCG-----------T--A-----TA-----GC--------------CAAA-GTAAAATG--ATGTTTATAATTTTTCTACCT-ACTT-TGAA-CACGATTCGATCCCTATCATAGGGCCTATGTCAATTCAGATTATGTCCTCAT------C---TATC-G-TAC------CTAATCCTAGTCAAAACACA--TGCCAATGG-------ATTT-AATTGA------TG------CGTGTA--T------TATTATCTTTTTTAAAAAGT-------------------------TT-----TGTT------TAGCAAG-CCGACAATGGATGAGTTACG-AAG---CCATGA-TTATTCT-ATCAA-TACT-GTCAGAAC
gi|7 : gttcataatgcacattaA-CAC-ATTCG--------CAT----CCTATGTCAATTCAAAT---------AC------C---TATC-G-ATC------CTAATCCTAATCAAAACACA--TT---AT-G-------ATTT-AGTTGA------TG-----CCGTGCA--T------T-TT--------------G--------------------------TT---G-TATT-----ATAGCTA--CCGACAAGAGATGTG-TACG-AAG---CCATAC-TT-TTCT--TCAATTACT-GTCAGTACgaataacgatggtttggaatacagcataaattaattttgattttgttcatttttgggtcaataatgtcgcattgtcaatgacgattacataagattgtgtgatcaataatgccggaaaatcaatactttctctttctaaactcaacgtccgttcaaattatcggtcgttacttattcctaatcacaaacagccgatttacattcattatattttagctgatgtaattttatgtcaatttatatttcgcaacaataaatttattgcaa
gi|8 : TAGGTGGCGGGCGGAGCCCAATCTTG-TGC-AGT-GTG-A-TAGCTGGCGGAAAGC-GTGA-GGGTT-GTGTAT-ACCGTTTTCCCTCT-GATA-CATGGGA--T---TACTCCCCAA-GGCCC-GTG--------------TCGAC-CTTGTCA--TAAGTCAAAAATGTTAAGAGCA---AAGG---T-ACAT-T--T-----AA--T--------------------AG---ATGTA--AAA-T---TAGA---------GAA-A----------ATT----TGCATGT-GC-G--A-AT-CGACGTCCATAA-CGACGCACGT----G---GCAC-ATGCAGT-TGGACATGTCATCTGATTGTATA-TTCGGCAT--TCCTCCTAT--CACTGGTCCTGACGA-GAGGGTGGTTCAA-GA-TTAT-C-GATGTCAA-TTTCTTCTCACT---AGAAGT-CAGTCC-CATCCATTATAAG---CGAACAGGG-CT-C-TTA---GG---GG-GT--AA----TCTCTT-CCGATA-----------GC-T-----TCG-----TTG-CCC--A-----T------GT----TG--------CAAA-GTAAA--------TTTACACTTTTTCTACCTAAATT-TGAA-CACGATTTG--------tttctctttctaaattccaatgtctgttgaaattcttcctaatcaaaaacaactatttataaatcattaagctgatgtatatgtcaattattttcacgcttatttcgcaacataaatgtagtgccaaaaccataatatagtttatcattccaagtaatagtcgctactttctctttcgtataaaaaaatcaattgattatcaacaacccatcataatttaaattcattgcaacaatattatgtatttcaaagtcataatttttctatcaccacttctttagccatgctggttactagcggcattataagcttgcaaaaggttttcttcacacctcactcggtcgagaatgacaagaatatacacacg
gi|9 : taacttgTAGGTGG-TGGCGGAGCC-AATCGTA-TGC-AGTTGTG-AATTGCCGGAGGGTAGC-GTGA-GAGCTTGTGTAT-ACCATC------CT-GATAACACGGGGTCT---TAATTACCTGTG--CCGGTGTTACCTGTATTACTTCGATG-TTGTCA--TAAGTAAAAAATGTTGA-AGTA---AAATAAAT-AT-TAT--TGTAAAAA--TTAGGA---AG-----AAT--AATTTATGTA--AAACTAGCCAGAATTT-GTTTGATTAATATCAAAAGATT-GATTGTCTGT-GC-G--A-CT----CGTTCATAA-TG---CAC
5 sequences could not be aligned to this reference sequence:
Unaligned ( gi|12 ): CTAAAACCGAGCTGATTGACCCACTGGTTTACCTCAGGTAGGTTAAGCTGAGGGGTGGAGCTAATTTTACGCAGGCGTGAAGCCCCTGATGGAATCATGCTAGCTTGTGCATACCCTTTAAGATCACGCGGGATTTTATTCGCATTACCTGTATTACCTGTATTACTTCGAAGTTTTCTTTCAAAGTAG
Unaligned ( gi|16 ): ATATTGTCAGATTTTTTCTCTTTCTAAATTCGATGTCTGTTGAAAGTATTTGTCTTACTTATTCCTAATCACAATAACCTATTATAATTCATAAGCTGATGTAATTACATGTCAATTATTTTTCACGTCTTATTTCGCAACAAAT
Unaligned ( gi|17 ): AAGGGAGATAAGATGTACGAAGGACGAGTAACTAAATGTCAATCAATTTAGCATCCAAAAGTGAAGCTTAATTTTTCAAAGATTTACAGGGGTTCACAGAACAGGTAAATTTGAGGGCGGTACTTATTTCCTTGGTCTT
Unaligned ( gi|20 ): ATCAAACGATAATCTTCACACCTCACTCGAGACACAAGGTTTACTAGATATACACACGGATTAGTTACTAAATGTC
Unaligned ( gi|21 ): ATTTAAAGTCCAGGTTTTTCAACCGTGGGTTTTCCTCAGGTAAGTTAAAGTGGA
Alignments
lowQualScore : 111111111111111111111111111111111111111111111111111111111111111111111 111111111111111111111111111111111111111111111111
lowQualScore : 1 111111 11 2222222 33333333333333 1 111 111 444444444444444444444444444444444 111 11 1111 11 3333333333 1 1111 111 33333333 1 1 333333333333 22222 11 11 1 22 11 1 1 1 1 222 1 111 1 1 1 1 222 111 1 11 111 2 222222222222222222222222222222222222222222222222222222222222222222222 222222 1 333333333 1111 444444444444444444444 111111 111 222222222 2222222222222 111111 222222222222222222222222222222222222222222222222 22222222222222 11 1
lowQualScore : 5 2 5 0 5 5 0 5 0 5 5 5 444444 22 6666666 5 77 5 99999999999999 4 77 8 444 444 8 8 8 111111111111111111111111111111111 444 11 5 7777 66 8 0 5555555555 999 3 6 0000 777 6 111 66666666 0 9 2 777777777777 0 88888 33 0 33 0 1 7 00 44 3 3 7 3 3 44 333 7 2 3 0 7 3 777 0 0 0 0 333 666 0 33 777 0 111111111111111111111111111111111111111111111111111111111111111111111 8 999999 0 11 8 8 6 0 111111111 7777 999999999999999999999 5 999 666666 1 77 777 444444444 5 6666666666666 77 666666 5 666666666666666666666666666666666666666666666666 44444444444444 3 5 888 5 5 00 1 8
lowQualScore : . . . . . . . . . . . . ...... .. ....... . .. . .............. . .. . ... ... . . . ................................. ... .. . .... .. . . .......... ... . . .... ... . ... ........ . . . ............ . ..... .. . .. . . . .. .. . . . . . .. ... . . . . . . ... . . . . ... ... . .. ... . ..................................................................... . ...... . .. . . . . ......... .... ..................... . ... ...... . .. ... ......... . ............. .. ...... . ................................................ .............. . . ... . . .. . .
lowQualScore : 0 5 0 5 0 0 5 0 2 0 0 0 444444 55 0000000 7 99 7 33333333333333 1 99 0 000 000 0 0 0 666666666666666666666666666666666 000 00 6 8888 22 0 8 0000000000 000 5 7 0000 555 7 777 00000000 0 0 5 222222222222 2 55555 88 2 88 0 0 3 00 00 3 3 3 3 3 33 777 3 5 2 0 0 2 555 0 0 0 0 222 222 0 88 000 0 888888888888888888888888888888888888888888888888888888888888888888888 0 888888 8 44 0 0 7 0 555555555 0000 999999999999999999999 7 666 444444 0 99 999 666666666 7 7777777777777 99 444444 7 000000000000000000000000000000000000000000000000 11111111111111 2 0 888 7 7 77 4 0
consensus : TTAGGTGG-GGGCGGAGCC-AATCTTA-TGC-AGTCGTG-AATAGCTGGAGGGAAGC-GTGA-GGGTTTGTGTAT-ACCGTC------CT-GATAACATGGGA--T---TAATCCCCAG-G--CC-GTG--------------TCGACGTTTGTCA--TAAGTCAAAAATGTTGA-AGTA---AAAC---T-AT-T-T--T-----AA--TTAGGAACCAG---TTAA---AA---ATGTA--AAAAT---TAGAATTT-GTTTGATTA----------ATT-GTCTGCATGTCGC-G--ATCT-CGACGTCCATAA-CG---CACGG----GTTCGCAC-ATGCAGTCTGGACAT-----CCGACTGTATA-N---GCAT--TCCCCCTAT--CA-TGGTNCTGACGA-GAGGGTGGTTCAAGGA-TTAT-CAGATG-CAA-TTTCTTCCCGCTC-CAGAAGTCCAGTCC-AATCCATTATAAG---CGAA-AGGG-CT-C-TTA-T-GG--CGG-GT--AA--TTTCTCTT-CCGATA-----------GCTT-----TCG-----GTA-ACT--A-----TA-----GC----TG--------CAAA-GTAAAAAA--ATGTTTACAATTTTTCTACCT-AATT-TGAA-CACGATTCG--------CAT----CCTATGTCAATTCAAATTATGT-CTCAC------C---TATC-G-ATC------CTANTCCTAATCAAAACACA--TT---ATGG-------ATTT-AGTTGA------TG-----CCGTGCA--T------T-TT--------------GT-------------------------TT---G-TGTT-----ATAGCGAG-CCGACAATAGATGTGTTACG-AAG---CCATAA-TT-TTCT-ATCAA-TACT-GTCAGTAC
Reference ( family-2679 ) : TTAGGTGG-GGGCGGAGCC-AATCTTA-TGC-AGTCGTG-AATAGCTGGAGGGAAGC-GTGA-GGGTTTGTGTAT-ACCGTC------CT-GATAACATGGGA--T---TAATCCCCAG-G--CC-GTG--------------TCGACGTTTGTCA--TAAGTCAAAAATGTTGA-AGTA---AAAC---T-AT-T-T--T-----AA--TTAGGAACCAG---TTAA---AA---ATGTA--AAAAT---TAGAATTT-GTTTGATTA----------ATT-GTCTGCATGTCGC-G--ATCT-CGACGTCCATAA-CG---CACGG----GTTCGCAC-ATGCAGTCTGGACAT-----CCGACTGTATA-N---GCAT--TCCCCCTAT--CA-TGGTNCTGACGA-GAGGGTGGTTCAAGGA-TTAT-CAGATG-CAA-TTTCTTCCCGCTC-CAGAAGTCCAGTCC-AATCCATTATAAG---CGAA-AGGG-CT-C-TTA-T-GG--CGG-GT--AA--TTTCTCTT-CCGATA-----------GCTT-----TCG-----GTA-ACT--A-----TA-----GC----TG--------CAAA-GTAAAAAA--ATGTTTACAATTTTTCTACCT-AATT-TGAA-CACGATTCG--------CAT----CCTATGTCAATTCAAATTATGT-CTCAC------C---TATC-G-ATC------CTANTCCTAATCAAAACACA--TT---ATGG-------ATTT-AGTTGA------TG-----CCGTGCA--T------T-TT--------------GT-------------------------TT---G-TGTT-----ATAGCGAG-CCGACAATAGATGTGTTACG-AAG---CCATAA-TT-TTCT-ATCAA-TACT-GTCAGTAC
gi|1 : ----CCTATGTCAATTGAAATTATGTACTCATAATTATC---TATC-G-TAC------CTATTCCTAATCAAAACACA--TT---ATGA-------ATTT-AATTGA------C------TCATGTA--T------T-TT--------------TT-------------------------TTTT-A-TGTTTTGAAGTATTGTG-CCGACAATAGATGTGTTACA-GAA---CCATTA-TT-TCCT-ATCAA-TACT-GTCAGTAC
gi|1 : tttccggtcAAATCAAATTTTTC-CTCGC------C----------A-C------CTATTCCTGATCACAACCCA--TC---ATGATTTATTAATTTTAATTGA------TGTAAAACTTTGTA--TGTTAACT-TC--------------AT-------------------------TTCAAA-TCTT-----AT-TTG----CAACAATAGATGTATTACA-AAG---TCATCA-TT----T-ATCAA-TAtttctcttttcgtataaactcgatatccgttcaaattatctgttgtactatatctatcacaacaaccctaatcatatattttaactgatgtaattgtatgttcaattatttttcaagtcttatttcgcaactaattatgtattgcaaagccatgatattaatactgcttcatcttcaagaatagtcgaactttctctttcgtataaaaatcaaatttttcctcgccacctattcctgatcacaacccatcatgatttattaattttaattgatgtaaaactttgtatgttaacttcatttcaaatcttatttgcaacaatagatgtattacaaagtcatcatttatcaataatattactttatcatgctggtatactacatggtaagcatcaaaagattttcttcatgcctcgatcgagacaaaaggttgacaggatacacacgcagattagttactaaatgtcaatcaatttctatcatccaatataaaggtaagttgcaaatgactgacagtggtacgtaaaccagggaaaatttgagggtggtggcttatttttccggcc
gi|10 : tttccggtccctatgtcaattgaaattatgtactcataattatctatcgtacctattcctaatcaaaacacattatgaatttaattgactcatgtattttttttttatgttttgaagtattgtgccgacaatagatgtgttacagaaccattatttcctatcaatactgtcagtactttctcttttcgtataaactcgatatccgttcaaattatctgttgtactatatctatcacaacaaccctaatcatatattttaactgatgtaattgtatgttcaattatttttcaagtcttatttcgcaactaattatgtattgcaaagccatgatattaatactgcttcatcttcaagaatagtcgaactttctctttcgtataaTTAGATGG-GGTTGGAGCT-AATTTTAATGCGAGGTGTG-AATTGCTGGAGAGCAGT-G-GA-GAGCTTGTGTAT-ACCGTC------CTCGATAACAatattactttatcatgctggtatactacatggtaagcatcaaaagattttcttcatgcctcgatcgagacaaaaggttgacaggatacacacgcagattagttactaaatgtcaatcaatttctatcatccaatataaaggtaagttgcaaatgactgacagtggtacgtaaaccagggaaaatttgagggtggtggcttatttttccggcc
gi|11 : ttaaagaccgagattttcgaccaccggttcctcaggtaagtTTAGGTGG-GGGCGGAGCC-AATCTTA-TGC-AGGTGTGGAATAGCTGGAGGGAAGC-GTGA-GGGTTTGTGTAT-ACCGTC------CTGGATAACATGGAT--C---TAATCCCCA--G--CC-GTG--------------TCGACG-TTGTCA--TAccgctgcaataacacggtgatttaatttccctgggccttgtttacctgtgttaccatgatttctaacttcaacgttgtcatattagtcaagcatatattgaaagtaaaataactctataaattaaaaaaaaaggaagagtgttttgtgtaaaattagtcaaaattcgtttgatatctaaatcaaaaga
gi|13 : gtcatttgtaggcgaggttttcgacccaccggtctacctaagttaagtTTAGGTGG-GGGCGGAGCC-AATCTTA-TGC-AGGTGTG-AATAGCTGGAGGGAAGC-GTGA-GGGTTTGTGTAT-ACCGTC------CT-GATAACATAGGA--TC--TAATCCCCAG-G--CC-GTG--------------TCGACG-TTGTCA--TAActaaacaagaggccaaaggccttac
gi|14 : catttgtaggctgagattttcgacccatcggtctacctcagttaagtTTAGGTTG-GGGCG-AGCC-AATCAGT-TGC-AGTCGTG-AACAGCTGGAGGGAAGC-GTGA-GGGTTTGTGTAT-ACCGTC------CT--ATAACATGGGA------CAATCCTCAG-G--CC-GTG--------------TCGACGTTTGTCA--TA
gi|15 : gtcatttgtaggccgaggcttttcgacccaccgtctacctcagtaagtTCCAGTCCTAATCCATTGTAAG---CGAA-AAGG-CTCC-TTA-T-GG--CGG-AT--AATCTTTCTCTTACCGA-A-----------TCTTACGCGTGG-----GTA-ATT--AGCTTGTAATACCGC----TGAGACTGTCCAAA-GTACAGAAGGATGTTTAAAA-TTTTCTACCT-GATTGTGAA-CA
gi|18 : TCAAAAATGTTGA-AGTA---AAAC---T-AT-T-T--T-----AA--TTAGGAACCAG---TTAA---AA---ATGTA--AAAAT---TAGAA-TT-GTTTGATTA----------ATT-GTCTGCATGTCGC-G--ATCT-CGACGTCCATAA-CG---CAC
gi|19 : CATGTTAC-GGTATAT-C--CGTCCATGA-CG---CACGG-----TCTGCAC-AAACAGTCTGGACAT-----TCAGCTCTATA-G---GTAT--TCCCTCCAT--CA-
gi|2 : aTGTCAATTCAAATTATGTGCTCAT------TAATTATCTG-ATCGTCGGCCTATTCCTAATCAAAACACTGTTT---ATG--------ATTT-AATTGGGATGCGTG-----CCGTGT---T------T-TT--------------GTAGTTGGAAGTT--------------TT---GGTGTT------TAGCGATTCCGACAATAGATGCGTTACA-AAAGGTCCATAA-TT-TCCGAATCAA-TACTCGTTAGTAC
gi|3 : aattgcggtccctgttG-GGGCGGAGCC-AATCTTA-TGC-AGT--TG-AATAACTGGAGGGCAGCCGTGAAGGGTTTGTGTATTACCGTC------CT-GATAACATGGGA--TCGCTAATCCCCAG-G--C--GTGG-------------TCGACGTT-GTCAAATAAGTCAAAAATGTTGA-AGTAGAAAAAC---TCAT-T-TAAT-----AAAATTGCTAAC-AGAAATTAAGGAAA---ATACATGAAAAT----AGAATTTTGTTTGATTA----------ATTTGTCTGCATGTGGCTG--ACCTGCGACGTCCATAAACG----ACGGTTACATTCGCACGAT--ATCCTGGAC-----------CTATATC-A---GCATGGTCGCACTATTTCC-TCGTAC-GACGA--AGGGTGGTTCA-GGA-TTATTCAGATG-CAACTTTCCTCCTGCTCGCAGAAGTCC-GTCC-AGGCCATT-TAGGAGTCGAA-AGGGGCT-CGCTACT-GGTGCGGAGTTAAG--TTTCTCTTTCCGATATAATTAGCGTTGCTA-----TTGCATGTGTATACTTTG-----TA-----GCATGTTG--------CAAAAGTAAAA-----TGTTT-CAATTTTTCTACTA-AATT-TGAAACATGATTCG---------AT----CCTATGTCAATTTAAATTACG-------------C---TATC-GTATC-------TAATGCTAATCAAAACACA--TTTT-ATGG-------ATTT-AGTTGAA-----TG-----C-GTGCAACT------T-TT--------------GTTTGTCTACAAAGGCGAAGTTAACAATT---G-TGTC-----AAAGCGAG-CCGACAATAGATGTGTTACGAAAG---CCATAatgtactttcctcttttccgttattaactgatgtcgcggttcaaagtatctgttttatttgattcctgatcacaacaatccatctttaatgcattatagatttgcaactgattaattggtatgtcaattatgttgttcaagtctttatttcgcgaacaattaaacatcttcaagaataggcggtactttcgtcttcgttttaacatcgctattttaatcatttttaattcgtgtaaaactttgcatgtaatttttattcaaatctatattttgcaaacaatacatttgtttctatcaataccttttcggttatcatgcctgtgtactacctgcaggctaagacatcacaaacgattaactcttcacaccttcagcttcgagacaaccgggagtcagaacaggatatgacacggattaggtagctaaacgctcaatcaatttctatcctcctccaatatagaggtaaattgcaaaaatgactgacagcaggctacctagaccagtgtaaatttgagggaggtgggcttatttt
gi|4 : tCAACAATAGATGTATTTCA-AAG---TCATAATTT-TTCT-ATCAA-TGC
gi|5 : tttgttcatttttgggtcaataatgtcgcattgtcaatgacgattacataagattgtgtgatcaataatgccggaaaatcaatactttctctttctaaactcaacgtccgttcaaattatcggtcgttacttattcctaatcacaaacagccgatttacattcattatattttagctgatgtaattttatgtcaatttatatttcgcaacaataaatttattgcaagcataatactgtttcgtcatcagaaatagtcggtactttctcctacttttctctttcgtataaagaaatcaagtattattcaccccaccaagtccttaatcaacaaacccatcataattttattcattttaatttatgttaaactttgcatgttaactttattttaaatcttatttgTTAGGTTG-GGGCG-AGCC-AATCAGT-TGC-AGTCGTG-AACAGCTGGAGGGAAGC-GTGA-GGGTTTGTGTAT-ACCGTC------CT--ATAACATGGGA--C----AATCCTCAG-G--CC-GTG--------------TCGACGTTTGTCA--TAAGTCAAAAATGTTGA-AGTA---AAAC---T-AT-T-T--T-----AA--TTAGGAACCAG---TTAA---AA---ATGTA--AAAAT---TAGAA-TT-GTTTGATTA----------ATT-GTCTGCATGTCGC-G--ATCT-CGACGTCCATAA-CG---CACGG----GTTTGCAC-AT-CTGTCTGGACAT-----CTGA-TGTATATC---GCAT--TCCTCCTAT--CA-TGGTGCTGACGACGAGGGTGGTTCAAGGATTTAT-CAGATG-CAA-TTTCTTCCTCATC-TAG-AGTCCAGTCC-AATCCATTAT-AG---CGAA-AGGG-GT-C-TTA-TGGG--CGG-GT--AA--TTTCTCTT-CCA--A-----------GCTT-----TCG-----GTA-ACC--A-----TA-----GT----TG--------CAAA-GTAAAAAA--ATGTGTACACTTTTTCTACCT-AAAT-TGAA-CAC-ATTCG--------CAT----CCTATGTCAATTCAAAT---------AC------C---TATC-G-ATC------CTAATCCTAATCAAAACACA--TT---AT-G-------ATTT-AGTTGA------TG-----CCGTGCA--T------T-TT--------------G--------------------------TT---G-TATT-----ATAGCTA--CCGACAAGAGATGTG-TACG-AAG---CCATAC-TT-TTCT--TCAATTACT-GTCAGTACcatttcgttatcgtgctggggtactacgcggtaagcatcaaaagattttcttcacacctcgctctagacacgaggttgacaaaatatacgcacggattagttactaaatgtcaatcaatttctatcaaatgactgacagtggtacctagtttaggtaaattcgagggcggtggcttatttcctcggtctttaac
gi|6 : CTT-----TCG-----------T--A-----TA-----GC--------------CAAA-GTAAAATG--ATGTTTATAATTTTTCTACCT-ACTT-TGAA-CACGATTCGATCCCTATCATAGGGCCTATGTCAATTCAGATTATGTCCTCAT------C---TATC-G-TAC------CTAATCCTAGTCAAAACACA--TGCCAATGG-------ATTT-AATTGA------TG------CGTGTA--T------TATTATCTTTTTTAAAAAGT-------------------------TT-----TGTT------TAGCAAG-CCGACAATGGATGAGTTACG-AAG---CCATGA-TTATTCT-ATCAA-TACT-GTCAGAAC
gi|7 : gttcataatgcacattaA-CAC-ATTCG--------CAT----CCTATGTCAATTCAAAT---------AC------C---TATC-G-ATC------CTAATCCTAATCAAAACACA--TT---AT-G-------ATTT-AGTTGA------TG-----CCGTGCA--T------T-TT--------------G--------------------------TT---G-TATT-----ATAGCTA--CCGACAAGAGATGTG-TACG-AAG---CCATAC-TT-TTCT--TCAATTACT-GTCAGTACgaataacgatggtttggaatacagcataaattaattttgattttgttcatttttgggtcaataatgtcgcattgtcaatgacgattacataagattgtgtgatcaataatgccggaaaatcaatactttctctttctaaactcaacgtccgttcaaattatcggtcgttacttattcctaatcacaaacagccgatttacattcattatattttagctgatgtaattttatgtcaatttatatttcgcaacaataaatttattgcaa
gi|8 : TAGGTGGCGGGCGGAGCCCAATCTTG-TGC-AGT-GTG-A-TAGCTGGCGGAAAGC-GTGA-GGGTT-GTGTAT-ACCGTTTTCCCTCT-GATA-CATGGGA--T---TACTCCCCAA-GGCCC-GTG--------------TCGAC-CTTGTCA--TAAGTCAAAAATGTTAAGAGCA---AAGG---T-ACAT-T--T-----AA--T--------------------AG---ATGTA--AAA-T---TAGA---------GAA-A----------ATT----TGCATGT-GC-G--A-AT-CGACGTCCATAA-CGACGCACGT----G---GCAC-ATGCAGT-TGGACATGTCATCTGATTGTATA-TTCGGCAT--TCCTCCTAT--CACTGGTCCTGACGA-GAGGGTGGTTCAA-GA-TTAT-C-GATGTCAA-TTTCTTCTCACT---AGAAGT-CAGTCC-CATCCATTATAAG---CGAACAGGG-CT-C-TTA---GG---GG-GT--AA----TCTCTT-CCGATA-----------GC-T-----TCG-----TTG-CCC--A-----T------GT----TG--------CAAA-GTAAA--------TTTACACTTTTTCTACCTAAATT-TGAA-CACGATTTG--------tttctctttctaaattccaatgtctgttgaaattcttcctaatcaaaaacaactatttataaatcattaagctgatgtatatgtcaattattttcacgcttatttcgcaacataaatgtagtgccaaaaccataatatagtttatcattccaagtaatagtcgctactttctctttcgtataaaaaaatcaattgattatcaacaacccatcataatttaaattcattgcaacaatattatgtatttcaaagtcataatttttctatcaccacttctttagccatgctggttactagcggcattataagcttgcaaaaggttttcttcacacctcactcggtcgagaatgacaagaatatacacacg
gi|9 : taacttgTAGGTGG-TGGCGGAGCC-AATCGTA-TGC-AGTTGTG-AATTGCCGGAGGGTAGC-GTGA-GAGCTTGTGTAT-ACCATC------CT-GATAACACGGGGTCT---TAATTACCTGTG--CCGGTGTTACCTGTATTACTTCGATG-TTGTCA--TAAGTAAAAAATGTTGA-AGTA---AAATAAAT-AT-TAT--TGTAAAAA--TTAGGA---AG-----AAT--AATTTATGTA--AAACTAGCCAGAATTT-GTTTGATTAATATCAAAAGATT-GATTGTCTGT-GC-G--A-CT----CGTTCATAA-TG---CAC
blockSeqs : C G C . . T G C A T TTCCCT GG TCGCT T GC G TTACCTGTATTACT T AA G GAA AAA C A A AATAAAATTGCTAACAGAAATTAAGGA TTT TG A AGCC AT T ATATCAAAAG TGT T T GTAT GCG A ACG TTACATTC G G C ATGTCATCTGAT TTCG GG TT C G T CG AG T . A T . TC CT A C A . A A AGT C G . G CT TGC A TA T T ATATAATTAGCGTTGCTATTGCATGTGTATACTTTGTAGCATGTTG A AAAA AT A . A G ATCCCTATC AGGG TATGTGCTCATTAAT T TAT GTCGGC T GT CCA GATTTATTA T GATGCGTG AC GTTAAC A GTTTGTCTACAAAGGCGAAGTTAACAATTG TAGCGATT T A GGT T A AA T C
blockSeqs : . G . . . T . . . . . G TCTT . . . G T . . . . . . . TGTAAAAATTAGGAAGAAT . . A T AT . . GT G . AC CG . . GTTT . . C ATCTGA TC . . . C T G A . . . . . CA . . C A . A A . . . . . TG C . . T . AGCTTTCGGTAACCATAGTTG . ATGA CT . . . G C . TATGTCCTCATC . AT . T . TT GG . TGTAAAA . . . ATCTTTTTTAAAAAGTTT AAAGCGAG T . . . . A T .
blockSeqs : . G . . . C . . . . . G TCT . . . . T . . . . . . . TAATTAGGAACCAGTTAA . . C T A . . GA C . AT CG . . G . . . C A . . . . . . . . . . . . . . . . . . . ATAGCTTCGTTGCCCATGTTG . A AT . . . . C . TTTTCCTCGCC . AT . A . . GG . ATG . . . GTAGTTGGAAGTTTTGG ATAGCTA T . . . . A . .
blockSeqs : . G . . . C . . . . . G TT . . . . C . . . . . . . TAAT . . . . . . . . . . A C . . . . CT . . . . . TACGC . TA . A . . G . TG . . . ATTTCAAA TAGCAAG T . . . . A . .
blockSeqs : . G . . . T . . . . . G C . . . . . . . . A . . . . ACC . AT . A . . G . TG . . . GTTG ATAGCTA T . . . . . .
blockSeqs : . . . . . . . . . . . . C . . . . . . ACC . A . A . . G . TG . . . GTTG ATTTG . . . . . . .
blockSeqs : . . . . . . . . . . . . . . .
blockSeqCons : G* TCT**** TATTAGAGAATTAA******************* A* A***** NT TACGTCTCACC********** GG******* TG*********** GTTTAAAGTTG************************************* ATAGCGAG******
originalCons : TTAGGTGG-GGGCGGAGCC-AATCTTA-TGC-AGTCGTG-AATAGCTGGAGGGAAGC-GTGA-GGGTTTGTGTAT-ACCGTC------CT-GATAACATGGGA--T---TAATCCCCAG-G--CC-GTG--------------TCGACGTTTGTCA--TAAGTCAAAAATGTTGA-AGTA---AAAC---T-AT-T-T--T-----AA--TTAGGAACCAG---TTAA---AA---ATGTA--AAAAT---TAGAATTT-GTTTGATTA----------ATT-GTCTGCATGTCGC-G--ATCT-CGACGTCCATAA-CG---CACGG----GTTCGCAC-ATGCAGTCTGGACAT-----CCGACTGTATA-N---GCAT--TCCCCCTAT--CA-TGGTNCTGACGA-GAGGGTGGTTCAAGGA-TTAT-CAGATG-CAA-TTTCTTCCCGCTC-CAGAAGTCCAGTCC-AATCCATTATAAG---CGAA-AGGG-CT-C-TTA-T-GG--CGG-GT--AA--TTTCTCTT-CCGATA-----------GCTT-----TCG-----GTA-ACT--A-----TA-----GC----TG--------CAAA-GTAAAAAA--ATGTTTACAATTTTTCTACCT-AATT-TGAA-CACGATTCG--------CAT----CCTATGTCAATTCAAATTATGT-CTCAC------C---TATC-G-ATC------CTANTCCTAATCAAAACACA--TT---ATGG-------ATTT-AGTTGA------TG-----CCGTGCA--T------T-TT--------------GT-------------------------TT---G-TGTT-----ATAGCGAG-CCGACAATAGATGTGTTACG-AAG---CCATAA-TT-TTCT-ATCAA-TACT-GTCAGTAC
finalCons : TTAGGTGG-GGGCGGAGCC-AATCTTA-TGC-AGTCGTG-AATAGCTGGAGGGAAGC-GTGA-GGGTTTGTGTAT-ACCGTC------CTG-ATAACATGGGATCT----AATCCCCAG-G--CC-GTG--------------TCGACGTTTGTCA--TAAGTCAAAAATGTTGA-AGTA---AAAC---T-AT-T-TTATTAGAGAATTAA-------------------AA---ATGTA--AAAAT---TAGAA-TT-GTTTGATTA----------ATT-GTCTGCATGTCGC-G--ATCT-CGACGTCCATAA-CG---CACGG----GTTCGCAC-ATGCAGTCTGGACAT-----CCGACTGTATA-N---GCAT--TCCCCCTAT--CA-TGGTNCTGACGA-GAGGGTGGTTCAAGGA-TTAT-CAGATG-CAA-TTTCTTCCCGCTC-CAGAAGTCCAGTCC-AATCCATTATAAG---CGAA-AGGG-CT-C-TTA-T-GG--CGG-GT--AA--TTTCTCTT-CCGATA-----------GCTT-----TCG-----GTA-ACT--A-----TA-----GC----TG--------CAAA-GTAAAA-----TGTTTACANTTTTTCTACCT-AATT-TGAA-CACGATTCG--------CAT----CCTATGTCAATTCAAATTACGTCTCACC----------TATC-G-ATC------CTANTCCTAATCAAAACACA--TT---ATGG-------ATTT-AGTTGATG-----------CCGTGCA--T------T-TTGTTTAAAGTTG-------------------------------------TGTTATAGCGAG------CCGACAATAGATGTGTTACG-AAG---CCATAA-TT-TTCT-ATCAA-TACT-GTCAGTAC
5 sequences could not be aligned to this reference sequence:
Unaligned ( gi|12 ): CTAAAACCGAGCTGATTGACCCACTGGTTTACCTCAGGTAGGTTAAGCTGAGGGGTGGAGCTAATTTTACGCAGGCGTGAAGCCCCTGATGGAATCATGCTAGCTTGTGCATACCCTTTAAGATCACGCGGGATTTTATTCGCATTACCTGTATTACCTGTATTACTTCGAAGTTTTCTTTCAAAGTAG
Unaligned ( gi|16 ): ATATTGTCAGATTTTTTCTCTTTCTAAATTCGATGTCTGTTGAAAGTATTTGTCTTACTTATTCCTAATCACAATAACCTATTATAATTCATAAGCTGATGTAATTACATGTCAATTATTTTTCACGTCTTATTTCGCAACAAAT
Unaligned ( gi|17 ): AAGGGAGATAAGATGTACGAAGGACGAGTAACTAAATGTCAATCAATTTAGCATCCAAAAGTGAAGCTTAATTTTTCAAAGATTTACAGGGGTTCACAGAACAGGTAAATTTGAGGGCGGTACTTATTTCCTTGGTCTT
Unaligned ( gi|20 ): ATCAAACGATAATCTTCACACCTCACTCGAGACACAAGGTTTACTAGATATACACACGGATTAGTTACTAAATGTC
Unaligned ( gi|21 ): ATTTAAAGTCCAGGTTTTTCAACCGTGGGTTTTCCTCAGGTAAGTTAAAGTGGA
Alignments
lowQualScore : 111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 1 111111 4444444444444444 1111 666666666666666666666666666666666666666 1 111 11111 9999999999999999999999999999999999999999999999999 22222 2222 3333333333 1 1111 111 33333333 1 1 333333333333 22222 11 11 1 22 1 1 1 1 222 1 111 111 1 1 222222 1 11 111 1 1 222222222222222222222222222222222222222222222222222222222222222222222 1111111 11111111 1 333333333 1111 5555555555555555555555555555555555555 11 111 222222222 22222222222222 999999999999999999999999999999999999999999999 111 33333333333333 11 1
lowQualScore : 5 2 5 0 5 5 0 5 0 5 5 5 444444 0000000000000000 5 9999 66 5 444444444444444444444444444444444444444 7 66 66 99 6 6 111 33333 6 9999999999999999999999999999999999999999999999999 00000 0000 0 5555555555 8 1 3 6 0000 777 6 111 66666666 0 9 2 777777777777 0 88888 33 0 33 0 1 7 00 7 6 3 3 7 3 3 44 333 7 2 3 0 7 3 777 111 0 0 777777 2 0 33 777 0 0 111111111111111111111111111111111111111111111111111111111111111111111 8 9999999 66666666 0 11 8 8 8 0 111111111 7777 9999999999999999999999999999999999999 1 55 000 444444444 5 5 77777777777777 77 333333333333333333333333333333333333333333333 000 11111111111111 3 5 888 5 5 00 1 8
lowQualScore : . . . . . . . . . . . . ...... ................ . .... .. . ....................................... . .. .. .. . . ... ..... . ................................................. ..... .... . .......... . . . . .... ... . ... ........ . . . ............ . ..... .. . .. . . . .. . . . . . . . .. ... . . . . . . ... ... . . ...... . . .. ... . . ..................................................................... . ....... ........ . .. . . . . ......... .... ..................................... . .. ... ......... . . .............. .. ............................................. ... .............. . . ... . . .. . .
lowQualScore : 0 5 0 5 0 0 5 0 2 0 0 0 444444 8888888888888888 0 5555 99 0 222222222222222222222222222222222222222 4 99 99 22 7 7 777 77777 7 3333333333333333333333333333333333333333333333333 55555 7777 8 0000000000 0 0 5 7 0000 555 7 777 00000000 0 0 5 222222222222 2 55555 88 2 88 0 0 3 00 3 7 3 3 3 3 3 33 777 3 5 2 0 0 2 555 000 0 0 000000 5 0 88 000 0 0 888888888888888888888888888888888888888888888888888888888888888888888 0 0000000 66666666 8 88 0 0 0 0 555555555 0000 0000000000000000000000000000000000000 0 77 000 666666666 7 7 66666666666666 99 444444444444444444444444444444444444444444444 000 00000000000000 2 0 888 7 7 77 4 0
consensus : TTAGGTGG-GGGCGGAGCC-AATCTTA-TGC-AGTCGTG-AATAGCTGGAGGGAAG-CGTG-AGGGTTTGTGTA-TACCGTC------CT---------------GATAACATGG-GAT--C-TAAT--CCCCAG-G------------------CC-GT-G--------------TCGACGTTTGTC--ATA--AGTCAA--AAATGTTGA-A-GT---AAAAC---T-AT-T-T--T------A-TT------AG--AGAA----TTA---AAA---AT--GTAAAAAT---TAGAA--TTGTTTGATTA----------A-TTGTCTGCATGTCGC-G--ATCT-CGACGTCCAT-AACG---CACGG----GTTCGCAC-ATGCAGTCTGGACAT-----CCGACTGTATA-N---GCAT--TCCCCCTA--TCA-TGGTNCTGACGA-GAGGGTGGTTCAAGGA-TTA-TCAGATG-CAA-TTTCTTCCCGCTC-CAGAAGTCCAGTCC-AATCCATTATAAG---CGAA-A-GGGCT-C-TTA-T-G--GCGG-GT--AA--TTTCTC-TT-CCGATA-----------GCTT-----TCG-----GTA-AC--TA-----TA-----GC----TG--------C-AAAGT---A---AA--ATG---TTTACAATTTTTCTACCT-AATT-TG-AACACGATTCG--------CAT----CCTATGTCAATTCAAATTATGT-CTCAC------C---TATC-G-ATC------CTANTCCTAATCAAAACACA--TT---ATGG-------ATTT-AGTTG-A------TG-----CCGTGCA--T------T------TTNT--TT--------AAG-------------TT---GTGTT-----ATAGCGAG-CCGACAATAGATGTGTTACG-AAG---CCATAA-TT-TTCT-ATCAA-TACT-GTCAGTAC
Reference ( family-2679 ) : TTAGGTGG-GGGCGGAGCC-AATCTTA-TGC-AGTCGTG-AATAGCTGGAGGGAAG-CGTG-AGGGTTTGTGTA-TACCGTC------CT---------------GATAACATGG-GAT--C-TAAT--CCCCAG-G------------------CC-GT-G--------------TCGACGTTTGTC--ATA--AGTCAA--AAATGTTGA-A-GT---AAAAC---T-AT-T-T--T------A-TT------AG--AGAA----TTA---AAA---AT--GTAAAAAT---TAGAA--TTGTTTGATTA----------A-TTGTCTGCATGTCGC-G--ATCT-CGACGTCCAT-AACG---CACGG----GTTCGCAC-ATGCAGTCTGGACAT-----CCGACTGTATA-N---GCAT--TCCCCCTA--TCA-TGGTNCTGACGA-GAGGGTGGTTCAAGGA-TTA-TCAGATG-CAA-TTTCTTCCCGCTC-CAGAAGTCCAGTCC-AATCCATTATAAG---CGAA-A-GGGCT-C-TTA-T-G--GCGG-GT--AA--TTTCTC-TT-CCGATA-----------GCTT-----TCG-----GTA-AC--TA-----TA-----GC----TG--------C-AAAGT---A---AA--ATG---TTTACANTTTTTCTACCT-AATT-TG-AACACGATTCG--------CAT----CCTATGTCAATTCAAATTACGT-CTCAC------C---TATC-G-ATC------CTANTCCTAATCAAAACACA--TT---ATGG-------ATTT-AGTTG-A------TG-----CCGTGCA--T------T------TTGT--TT------A-AAG-------------TT---GTGTT-----ATAGCGAG-CCGACAATAGATGTGTTACG-AAG---CCATAA-TT-TTCT-ATCAA-TACT-GTCAGTAC
gi|1 : ----CCTATGTCAATTGAAATTATGTACTCATAATTATC---TATC-G-TAC------CTATTCCTAATCAAAACACA--TT---ATGA-------ATTT-AATTG-A------C------TCATGTA--T------T------TTTT--TT------------------------TT---ATGTTTTGAAGTATTGTG-CCGACAATAGATGTGTTACA-GAA---CCATTA-TT-TCCT-ATCAA-TACT-GTCAGTAC
gi|1 : tttccggtcAAATCAAATTTTTC-CTCGC------C----------A-C------CTATTCCTGATCACAACCCA--TC---ATGATTTATTAATTTTAATTG-A------TGTAAAACTTTGTA--TGTTAACT------TCAT--TT------C-AAA-------------TC---TTATT---------TG----CAACAATAGATGTATTACA-AAG---TCATCA-TT----T-ATCAA-TAtttctcttttcgtataaactcgatatccgttcaaattatctgttgtactatatctatcacaacaaccctaatcatatattttaactgatgtaattgtatgttcaattatttttcaagtcttatttcgcaactaattatgtattgcaaagccatgatattaatactgcttcatcttcaagaatagtcgaactttctctttcgtataaaaatcaaatttttcctcgccacctattcctgatcacaacccatcatgatttattaattttaattgatgtaaaactttgtatgttaacttcatttcaaatcttatttgcaacaatagatgtattacaaagtcatcatttatcaataatattactttatcatgctggtatactacatggtaagcatcaaaagattttcttcatgcctcgatcgagacaaaaggttgacaggatacacacgcagattagttactaaatgtcaatcaatttctatcatccaatataaaggtaagttgcaaatgactgacagtggtacgtaaaccagggaaaatttgagggtggtggcttatttttccggcc
gi|10 : tttccggtccctatgtcaattgaaattatgtactcataattatctatcgtacctattcctaatcaaaacacattatgaatttaattgactcatgtattttttttttatgttttgaagtattgtgccgacaatagatgtgttacagaaccattatttcctatcaatactgtcagtactttctcttttcgtataaactcgatatccgttcaaattatctgttgtactatatctatcacaacaaccctaatcatatattttaactgatgtaattgtatgttcaattatttttcaagtcttatttcgcaactaattatgtattgcaaagccatgatattaatactgcttcatcttcaagaatagtcgaactttctctttcgtataaTTAGATGG-GGTTGGAGCT-AATTTTAATGCGAGGTGTG-AATTGCTGGAGAGCAG-TG-G-AGAGCTTGTGTA-TACCGTC------CTCGATAACACCGCTGCAATAACACGGTGAT--T-TAATTTCCCTGG-GCCTTGTTTACCTGTGTTACC-AT-GATTTCTAACT----TCAACGTT-GTC--ATATTAGTCAAGCATATATTGA-AAGT---AAAAT---A-AC-T-C--T------A-T------------AAA----TTA---AAA---A-----AAAAGG---AAGAG---TGTTTatattactttatcatgctggtatactacatggtaagcatcaaaagattttcttcatgcctcgatcgagacaaaaggttgacaggatacacacgcagattagttactaaatgtcaatcaatttctatcatccaatataaaggtaagttgcaaatgactgacagtggtacgtaaaccagggaaaatttgagggtggtggcttatttttccggcc
gi|11 : ttaaagaccgagattttcgaccaccggttcctcaggtaagtTTAGGTGG-GGGCGGAGCC-AATCTTA-TGC-AGGTGTGGAATAGCTGGAGGGAAG-CGTG-AGGGTTTGTGTA-TACCGTC------CTG--------------GATAACAT-G-GAT--C-TAAT--CCCCA--G------------------CC-GT-G--------------TCGACG-TTGTC--ATA--tgtgtaaaattagtcaaaattcgtttgatatctaaatcaaaaga
gi|13 : gtcatttgtaggcgaggttttcgacccaccggtctacctaagttaagtTTAGGTGG-GGGCGGAGCC-AATCTTA-TGC-AGGTGTG-AATAGCTGGAGGGAAG-CGTG-AGGGTTTGTGTA-TACCGTC------CT---------------GATAACATAG-GAT--C-TAAT--CCCCAG-G------------------CC-GT-G--------------TCGACG-TTGTC--ATA--Actaaacaagaggccaaaggccttac
gi|14 : catttgtaggctgagattttcgacccatcggtctacctcagttaagtTTAGGTTG-GGGCG-AGCC-AATCAGT-TGC-AGTCGTG-AACAGCTGGAGGGAAG-CGTG-AGGGTTTGTGTA-TACCGTC------CT----------------ATAACATGG-GA-----CAAT--CCTCAG-G------------------CC-GT-G--------------TCGACGTTTGTC--ATA--
gi|15 : gtcatttgtaggccgaggcttttcgacccaccgtctacctcagtaagtTCCAGTCCTAATCCATTGTAAG---CGAA-A-AGGCTCC-TTA-T-G--GCGG-AT--AATCTTTCTC-TTACCGA-A-----------TCTTACGCGTGG-----GTA-AT--TAGCTTGTAATACCGC----TGAGACTGTCC-AAAGT---ACAGAAGGATG---TTTAAAA-TTTTCTACCT-GATTGTG-AACA
gi|18 : TCAA--AAATGTTGA-A-GT---AAAAC---T-AT-T-T--T------AATT------AG---GAACCAGTTA---AAA---AT--GTAAAAAT---TAGAA--TTGTTTGATTA----------A-TTGTCTGCATGTCGC-G--ATCT-CGACGTCCAT-AACG---CAC
gi|19 : CATGTTAC-GGTATAT-C--CGTCCAT-GACG---CACGG-----TCTGCAC-AAACAGTCTGGACAT-----TCAGCTCTATA-G---GTAT--TCCCTCCA--TCA-
gi|2 : aTGTCAATTCAAATTATGTGCTCAT------TAATTATCTG-ATCGTCGGCCTATTCCTAATCAAAACACTGTTT---ATG--------ATTT-AATTG-GGATGCGTG-----CCGTGT---T------T------TTGTAGTT------GGAAG-------------TTTTGGTGTT------TAGCGATTCCGACAATAGATGCGTTACA-AAAGGTCCATAA-TT-TCCGAATCAA-TACTCGTTAGTAC
gi|3 : aattgcggtccctgttG-GGGCGGAGCC-AATCTTA-TGC-AGT--TG-AATAACTGGAGGGCAGCCGTGAAGGGTTTGTGTATTACCGTC------CT---------------GATAACATGG-GATCGC-TAAT--CCCCAG-G-------------------C-GTGG--------------TCGACG-TTGTCAAATA--AGTCAA--AAATGTTGA-A-GTAGAAAAAC---TCAT-T-TAATAAA---A-TTGCTAACAG--A-AA----TTAAGGAAA---ATACATGAAAA----TAGAATTTTGTTTGATTA----------ATTTGTCTGCATGTGGCTG--ACCTGCGACGTCCATAAACG----ACGGTTACATTCGCACGAT--ATCCTGGAC-----------CTATATC-A---GCATGGTCGCACTATTTCC-TCGTAC-GACGA--AGGGTGGTTC-AGGA-TTATTCAGATG-CAACTTTCCTCCTGCTCGCAGAAGTCC-GTCC-AGGCCATT-TAGGAGTCGAA-AGGGGCT-CGCTACT-GGTGCGGAGTTAAG--TTTCTCTTT-CCGATATAATTAGCGTTGCTA-----TTGCATGTGTATACTTTG-----TA-----GCATGTTG--------CAAAAGT---A---AA--ATG---TTT-CAATTTTTCTACTA-AATT-TGAAACATGATTCG---------AT----CCTATGTCAATTTAAATTACG-------------C---TATC-GTAT-------CTAATGCTAATCAAAACACATTTT---ATGG-------ATTT-AGTTGAA------TG------CGTGCAACT------T------TTGT--TTGTCTACA-AAGGCGAAGTTAACAATT---GTGTC-----AAAGCGAG-CCGACAATAGATGTGTTACGAAAG---CCATAatgtactttcctcttttccgttattaactgatgtcgcggttcaaagtatctgttttatttgattcctgatcacaacaatccatctttaatgcattatagatttgcaactgattaattggtatgtcaattatgttgttcaagtctttatttcgcgaacaattaaacatcttcaagaataggcggtactttcgtcttcgttttaacatcgctattttaatcatttttaattcgtgtaaaactttgcatgtaatttttattcaaatctatattttgcaaacaatacatttgtttctatcaataccttttcggttatcatgcctgtgtactacctgcaggctaagacatcacaaacgattaactcttcacaccttcagcttcgagacaaccgggagtcagaacaggatatgacacggattaggtagctaaacgctcaatcaatttctatcctcctccaatatagaggtaaattgcaaaaatgactgacagcaggctacctagaccagtgtaaatttgagggaggtgggcttatttt
gi|4 : tCAACAATAGATGTATTTCA-AAG---TCATAATTT-TTCT-ATCAA-TGC
gi|5 : tttgttcatttttgggtcaataatgtcgcattgtcaatgacgattacataagattgtgtgatcaataatgccggaaaatcaatactttctctttctaaactcaacgtccgttcaaattatcggtcgttacttattcctaatcacaaacagccgatttacattcattatattttagctgatgtaattttatgtcaatttatatttcgcaacaataaatttattgcaagcataatactgtttcgtcatcagaaatagtcggtactttctcctacttttctctttcgtataaagaaatcaagtattattcaccccaccaagtccttaatcaacaaacccatcataattttattcattttaatttatgttaaactttgcatgttaactttattttaaatcttatttgTTAGGTTG-GGGCG-AGCC-AATCAGT-TGC-AGTCGTG-AACAGCTGGAGGGAAG-CGTG-AGGGTTTGTGTA-TACCGTC------CT----------------ATAACATGG-GAC-----AAT--CCTCAG-G------------------CC-GT-G--------------TCGACGTTTGTC--ATA--AGTCAA--AAATGTTGA-A-GT---AAAAC---T-AT-T-T--T------AATT------AG---GAACCAGTTA---AAA---AT--GTAAAAAT---TAGAA--TTGTTTGATTA----------A-TTGTCTGCATGTCGC-G--ATCT-CGACGTCCAT-AACG---CACGG----GTTTGCAC-AT-CTGTCTGGACAT-----CTGA-TGTATATC---GCAT--TCCTCCTA--TCA-TGGTGCTGACGACGAGGGTGGTTCAAGGATTTA-TCAGATG-CAA-TTTCTTCCTCATC-TAG-AGTCCAGTCC-AATCCATTAT-AG---CGAA-A-GGGGT-C-TTA-TGG--GCGG-GT--AA--TTTCTC-TT-CCA--A-----------GCTT-----TCG-----GTA-AC--CA-----TA-----GT----TG--------C-AAAGTAAAA---AA--ATG---TGTACACTTTTTCTACCT-AAAT-TG-AACAC-ATTCG--------CAT----CCTATGTCAATTCAAAT---------AC------C---TATC-G-ATC------CTAATCCTAATCAAAACACA--TT---AT-G-------ATTT-AGTTG-A------TG-----CCGTGCA--T------T------TT----------------G-------------TT---GTATT-----ATAGCTA--CCGACAAGAGATGTG-TACG-AAG---CCATAC-TT-TTCT--TCAATTACT-GTCAGTACcatttcgttatcgtgctggggtactacgcggtaagcatcaaaagattttcttcacacctcgctctagacacgaggttgacaaaatatacgcacggattagttactaaatgtcaatcaatttctatcaaatgactgacagtggtacctagtttaggtaaattcgagggcggtggcttatttcctcggtctttaac
gi|6 : CTT-----TCG-------------TA-----TA-----GC--------------C-AAAGT---A---AA--ATGATGTTTATAATTTTTCTACCT-ACTT-TG-AACACGATTCGATCCCTATCATAGGGCCTATGTCAATTCAGATTATGTCCTCAT------C---TATC-G-TAC------CTAATCCTAGTCAAAACACA--TGCCAATGG-------ATTT-AATTG-A------TG------CGTGTA--T------TATTATCTTTT--TTAA----A-AAG-------------TT---TTGTT------TAGCAAG-CCGACAATGGATGAGTTACG-AAG---CCATGA-TTATTCT-ATCAA-TACT-GTCAGAAC
gi|7 : gttcataatgcacattaACAC-ATTCG--------CAT----CCTATGTCAATTCAAAT---------AC------C---TATC-G-ATC------CTAATCCTAATCAAAACACA--TT---AT-G-------ATTT-AGTTG-A------TG-----CCGTGCA--T------T------TT----------------G-------------TT---GTATT-----ATAGCTA--CCGACAAGAGATGTG-TACG-AAG---CCATAC-TT-TTCT--TCAATTACT-GTCAGTACgaataacgatggtttggaatacagcataaattaattttgattttgttcatttttgggtcaataatgtcgcattgtcaatgacgattacataagattgtgtgatcaataatgccggaaaatcaatactttctctttctaaactcaacgtccgttcaaattatcggtcgttacttattcctaatcacaaacagccgatttacattcattatattttagctgatgtaattttatgtcaatttatatttcgcaacaataaatttattgcaa
gi|8 : TAGGTGGCGGGCGGAGCCCAATCTTG-TGC-AGT-GTG-A-TAGCTGGCGGAAAG-CGTG-AGGGTT-GTGTA-TACCGTTTTCCCTCT---------------GATA-CATGG-GAT----TACT--CCCCAA-GGC----------------CC-GT-G--------------TCGAC-CTTGTC--ATA--AGTCAA--AAATGTTAAGA-GC---AAAGG---T-ACAT-T--T------A-AT------AG--A--------------------T--GTAAAA-T---TAGA---------GAA-A----------A-TT---TGCATGT-GC-G--A-AT-CGACGTCCAT-AACGACGCACGT----G---GCAC-ATGCAGT-TGGACATGTCATCTGATTGTATA-TTCGGCAT--TCCTCCTA--TCACTGGTCCTGACGA-GAGGGTGGTTCAA-GA-TTA-TC-GATGTCAA-TTTCTTCTCACT---AGAAGT-CAGTCC-CATCCATTATAAG---CGAACA-GGGCT-C-TTA---G--G-GG-GT--AA----TCTC-TT-CCGATA-----------GC-T-----TCG-----TTG-CC--CA-----T------GT----TG--------C-AAAGT---A---AA--------TTTACACTTTTTCTACCTAAATT-TG-AACACGATTTG--------tttctctttctaaattccaatgtctgttgaaattcttcctaatcaaaaacaactatttataaatcattaagctgatgtatatgtcaattattttcacgcttatttcgcaacataaatgtagtgccaaaaccataatatagtttatcattccaagtaatagtcgctactttctctttcgtataaaaaaatcaattgattatcaacaacccatcataatttaaattcattgcaacaatattatgtatttcaaagtcataatttttctatcaccacttctttagccatgctggttactagcggcattataagcttgcaaaaggttttcttcacacctcactcggtcgagaatgacaagaatatacacacg
gi|9 : taacttgTAGGTGG-TGGCGGAGCC-AATCGTA-TGC-AGTTGTG-AATTGCCGGAGGGTAG-CGTG-AGAGCTTGTGTA-TACCATC------CT---------------GATAACACGG-GGT--CTTAAT--TACCTGTG------------------CCGGT-GTTACCTGTATTACTTCGATG-TTGTC--ATA--AGTAAA--AAATGTTGA-A-GT---AAAATAAAT-AT-TAT--TGTAAAAA-TT------AGGAAGAA----T------AATTTAT--GTAAAACTAGCCAGAAT-TTGTTTGATTAATATCAAAAGA-TTGATTGTCTGT-GC-G--A-CT----CGTTCAT-AATG---CAC
5 sequences could not be aligned to this reference sequence:
Unaligned ( gi|12 ): CTAAAACCGAGCTGATTGACCCACTGGTTTACCTCAGGTAGGTTAAGCTGAGGGGTGGAGCTAATTTTACGCAGGCGTGAAGCCCCTGATGGAATCATGCTAGCTTGTGCATACCCTTTAAGATCACGCGGGATTTTATTCGCATTACCTGTATTACCTGTATTACTTCGAAGTTTTCTTTCAAAGTAG
Unaligned ( gi|16 ): ATATTGTCAGATTTTTTCTCTTTCTAAATTCGATGTCTGTTGAAAGTATTTGTCTTACTTATTCCTAATCACAATAACCTATTATAATTCATAAGCTGATGTAATTACATGTCAATTATTTTTCACGTCTTATTTCGCAACAAAT
Unaligned ( gi|17 ): AAGGGAGATAAGATGTACGAAGGACGAGTAACTAAATGTCAATCAATTTAGCATCCAAAAGTGAAGCTTAATTTTTCAAAGATTTACAGGGGTTCACAGAACAGGTAAATTTGAGGGCGGTACTTATTTCCTTGGTCTT
Unaligned ( gi|20 ): ATCAAACGATAATCTTCACACCTCACTCGAGACACAAGGTTTACTAGATATACACACGGATTAGTTACTAAATGTC
Unaligned ( gi|21 ): ATTTAAAGTCCAGGTTTTTCAACCGTGGGTTTTCCTCAGGTAAGTTAAAGTGGA