lowQualScore : 1111111111111111111111111111111111111111
lowQualScore : 1 3333333333333333333333333333333333333333 222222 111 2222222222 222222222222 4444444444 1111 1 1111 1111111
lowQualScore : 777 66 66 3 0 0 4 55 4 0 2222222222222222222222222222222222222222 33 2 2 2 2 77 999999 222 3 4 777 6666666666 4 4 000000000000 22 5555 55 55 3 3 555 7777777777 88888888 44 1111 1 888 77777 0000 3 888888 4444444 1 7777 88888888 3 3 3 4
lowQualScore : ... .. .. . . . . .. . . ........................................ .. . . . . .. ...... ... . . ... .......... . . ............ .. .... .. .. . . ... .......... ........ .. .... . ... ..... .... . ...... ....... . .... ........ . . . .
lowQualScore : 999 11 11 6 0 4 0 55 0 8 4444444444444444444444444444444444444444 99 9 9 9 9 11 444444 777 6 0 000 7777777777 0 0 444444444444 44 1111 11 00 3 3 888 8888888888 88888888 00 8888 2 555 77777 8888 1 999999 5555555 8 1111 88888888 3 3 3 4
consensus : CCGACTC--GTGT--GT--CGA-TGT-GCTGTG-CTTTT--GTT-TTG--T-T---G--TTT-----------TTTGT--------CATGGCATGG--G-T-G-CATTAACTG-AGATCCAAN-GTAACATTA-----ATG---C-TAGA-AA---GT------GT--TTACAA-A-AAT------------CTGGACAGTAA-T--T-GCA-TG-G-AATTTT---CCAA---------AGAACAAC--CAC-GTTTTC---ATGAAT---GGACG-----A----T-AG-----TGCTCA-----GGGAC----TGTCCT--T-TACTCA-TC-GAGCG-AAAATCAGTAAACATT
Reference ( gi|6 ) : CCGACTT--GTGT--GT--CGA-TGT-GCTGTG-CTTTT--GTT-TTG-CT-T---G--TTT-----------TTTGTTCTTTTCCCATGGCATGG--G-T-G-CATTAACTG-AGATCCAAT-GTAACATTA-----TTG---C-TAGA-AA---GT------GT--TTACAA-A-AAT------------CTGGACAGTAA-T--T-GCA-TG-G-AATTTT---CCAA------TT-AGAACAAC--CAC-GTTTTT---ATCAAT---AGACG-----A----T-AG-----TGCTCA-----GGGAC----TGTCCT--T-TACTCA-TC-GAGCG-AAAATCAGTAAACACT
gi|5 : CCGACGT--GTGTTGGT--CGA-TGTTGCGGTGGCTTTTTGGTTATTG-CT-CTTGG--TTT-----------TTTGTTCTTTTCCC-TGGCATGG--GAT-GGCATTAACTG-AGATCCAATTGTAACATTAA----TTG---C-TAGACAA---GT------GT--TTACAA-A-A-T------------CTGGACAGTAA-T--TTGCA-TG-GGAATTTT---CCAA------TTTAGAACAAC--CAC-GTTTTTTTTATCAATT--AGACG-----A----TTAG-----TGCTCA-----GGGAC----TGTCCT--T-TACTCATTT-GAGCG-AAAATCAGTAAACAC
gi|9 : ccCCGACTAAAGTGT--GC--CGA-TGT-GCTGTG-CTTTT--GTT-T-G-TT-T---GGGTTT-----------TTTATGGT------ATGG-ACGG--G-T-A-CATTAACTG-AGATATAAG-GTAACATTA-----ATG---C-TAGA-AA---GT------AT--CAACAA-A-AAT------------CTGGACAGTAA-T--G-ACA-TG-G-AATTTT---CCAG---------AGAATAAC--CAC-ATTTTC---ATGAAT---GGACG-----A----T-AA-----TGCTT----------C----TG---------A--CA-TC-GAGCG-AAAATCAGTAAATAT
gi|7 : cccccCCGACTT--GTGT--GT--CGA-AGTCGATGTG-CTTTT--GTT-T---------------------------TTT-TT-------CATGGTATGGGTG-T-G-CATTAACTGAAGATCTAAT-GTAACATTA-----TTG---C-TAGA-AA---GT------TG--TTACAA-A-AATC-----------CTTGACCGTAATT--T-CCA-TG-G-AATTAT---CCG----------AG---AAC--CAC-ATTTTC---ATGAAT---ATGCG-----A----T-AGTACTCTGCTCA-----AGAAC----TGTCCA--T-TACTCA-TC-GTTCG-AAAATCAGTAAACAT
gi|8 : ccctccCCGACTC--GTGT--GT--CGA-TGT-GCTGTG-CTTTT--GTT-TTG-ATAT---G--TTT-----------TT-----------CATGGCATGG--G-T-G-CACTAACTG-AGATCCAAG-GTAACATTA-----ATG---CTTAAA-AA---GT------TT--TTACAA-A-ACT------------CTAGACAG-------T-GTA-TG-G-GATTTT---CCAA---------AG---------AC-GTTTTTC--ATGAAT---GGGCGATAATA----T-AA-----TGTTCC-----TGCA-----TGTCCTGAT-TA-TGA-TC-GAGCA-AAAATCACTAAATAT
gi|13 : cccCCGACTC--GTGT--GT--AGA-TGT-GCTG
gi|14 : ctCCGACTC--GTGT--GT--AGA-TGT-GCTGgcatgggtgcattgactgagatccaatgtaacattaaatcattaatcttagaaagtacctttgtacttacaaaaagctggacagtaatttcaaggacaaccaaatgttcatgattagacgatattgctcagggactgtcctttactcatcgagagaaaatcagtaaacatt
gi|11 : CCGACTC--GTGC--GT--TGT-TAT-GATAT----TTT--GAT-TTG------------TT-----------TTT---------------CATGG--G-T-G-CACTAACTA-AGATGCAAG-GTAATATTA-----ATG---C-TAAA-AATTTTT------TT--TTACAA-A-AAT------------ATAGGTAG-------T-GTA-TT-G-AATTTT---CCA------------AACAA-------GTTTTTC--ATGAAT---GGACA-----A----T-AA-----Tgcatgggtgcattgactgagatccaatgtaacattaaatcattaatcttagaaagtacctgtacttacaaaaagctggacagtaatttcaaggacaaccaaatgttcatgattagacgatattgccagggactgtccttactcatcgagagaaaaatcagtaaacatt
gi|19 : ctcCGACTT--GTG---GTTCCGACTGTCGATGTG-CTTTT--ATT-TTG--------G--TTT-----------TTT-----TTCCCCATGGTATGG--G-TTG-CATTACCTG-AGATCCAAT-GTAACATTA-----ATG---A-TAGA-AA---GT------GT--aaatataatgatcctgcatgacttggtgatgatcgaacaaaaatgactaaatattg
gi|10 : --GTGT--GT--CAA-TGT-GATGTG-CTTCT--GTT-TTG------------TT-----------TTT----------CGTGGCATGG--G-T-G-TATTTACTG-AGATCCAAG-GTAACATCA-----ATG---C-TAAA-AA---GT------AT--TTACTA-A-TAC------------CTAGACAGT-T-T--T-GCA-TG-G-AATTTT---CCAAAGAAGTTT-AGAACA-----AC-ATTTTC---ATGAAT---GGACG-----ATAAGT-AA-----TGCT-------GGTACTGCATGTCCT--G-T--TGA-TC-GAGCA-AAAATCAGTAAATA
gi|15 : cGA-TGT-TCTGTG-CTTTT--GTT-TTA-------------T-----------TTTGTTT------CATGGCATGG--G-T-G-CAGTAACTG-AGATCCAAT-GTACCATTA-----ATG---C-TAt
gi|21 : ggggggctgccccctctaaatccgccactgGA-TAT-GCTGTG-CTGTG--GTT-TTG-TT-T---A--TT--------------------------ATGGCATGG--G-T-G-CATTTACTG-AGATCCAAA-GTttgttcatgaattacagacgatagtgctcagggactgtcctttactcatcgagagaaaatcagtaaacatt
gi|22 : ccctcccccgactT-GATGTG-CTTTT--GTT-TTGATT-T---G--TTT-----------TT-----------CATGGCATGG--G-T-G-CATTAACTG-AGATCCAAG-GTAACt
gi|12 : cccccgacT-T---G--TTTTTGCTTTTGTATTTGTTTTTTTTTT----CATGG-----------TAAAAG-AAATCAAAC--TACTGTTA-----ATG---C-TCAA-AA---GT------AT--TTACAA-ATAATTGATGACAATAACTGGATAGTAA-T--T-GCA-CG-A-CATTTT---CCAG------AA-AGA--AGT--CAG-ATTTTC-------AT---GGACG-----A----T-AA-----TGCTC----------C----TGT--------------TC-AAGCG-ATAATTACTAAATAT
gi|23 : tgtgtgtgtgtg--TCT-----------TGTGTGCCTGTTCCGCGAC--GG--G-T-G-CATAAACTG-AGATCCAAG-GTAACAa
gi|13 : acccccgacTGGCATGG--G-T-G-CATTGACTG-AGATCCAAT-GTAACATTAAATCATTAATCT-TAGA-AA---GTACCTTTGTACTTACAA-A-AAG------------CTGGACAGTAA-T--T-TCA----------------------------AGGACAAC--CAA-ATGTTC---ATGATT---AGACG-----A----T-AT-----TGCTCA-----GGGAC----TGTCCT--T-TACTCA-TC-GAGAG-AAAATCAGTAAACATat
gi|14 : ctccgactcgtgtgtagatgtgcTGGCATGG--G-T-G-CATTGACTG-AGATCCAAT-GTAACATTAAATCATTAATCT-TAGA-AA---GTACCT--GTACTTACAA-A-AAG------------CTGGACAGTAA-T--T-TCA----------------------------AGGACAAC--CAA-ATGTTC---ATGATT---AGACG-----A----T-AT-----TGC-CA-----GGGAC----TGTCC---T-TACTCA-TC-GAGAGAAAAATCAGTAAACAT
gi|16 : ccgactcgtgtgtagatgtgcACAACA-AAT------------CTGGACAATAA-T--T-TCA-TG-G-AATTTTCCCCCAA---------AGAAC-AC--CAC-ATTTTC---ATGAAT---AGACG-----ATC--T-AG-----TACTCATGCAGAGGAC----TGGTAT--T-T-TTCA-TC-GAGCG-AAA
gi|18 : aAT------------CTGGACAGTCA-TACT-GTAACGAG-AGTTTT------G------TC-AGAG--ACT-CACAGGGTTT---ATCA-T---GGACG-----A----T-AA-----TGC---------------------CT--TGTATCCA-TCTGAGCG-AAAATTAGTGAATAT
gi|17 : tggatT------------CTGGATAAAAA-A--T-TTA-TG-G-AATTTT---CCAA---------AGAACAACTGTAC-ATTTTT---ATGAAT---GGACG-----A----T-AG-----TGATCA-----GGGAC----TGTCCT--T-TGCTCA-TC-GTGCG-AAAAACAGTAAACAT
gi|15 : TTC---ATGAATTACAGACG-----A----T-AG-----TGCTCA-----GGGAC----TGTCCT--T-TACTCA-TC-GAGAG-AAAATCAGTAAACAT
5 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|1 ): AATGTTTTACTAATACGAAATTTTATTAATAATCAACGGCTGCAGGTCTAAACAATCAATCTGACAAGTTTTTAAAATATCTTACATGTACACTGTATTTATTCTGCTCTTGTACGTGAAATTTGAACTGGTTTGTGTGTTGTAGATGGTGTATGATTTAGAATATAAAGGCCTTATTGTCTAAATAAAGATATGTTGTACATAAACAATAACCATTGCTGAATATTATTAATTTTAAATCAATTCTTTCAAAGAAAATATTACATGATGATATAATCAACCACTCTTTTTGTTCTGAATTATTAGCAAAAAATGTAAAAAAAAAAAAA
Unaligned ( gi|2 ): AAATGTTTTTCTATAATCAGACTTTATTTCAAATCTATAGCGGCTAGCAGGTCTAAAAATCAACTCTTGACAATTTTTTTAAAAATAACTTTAACATGTACACTGTTTTTATTTCGTGTCTTGTACGTGATTTGACTGGTTTGTGTTTGTAGATGTGTGTATTGTTTGAAATAAAGCCTTATTGTTAATAAAACATAACATGCTGGATGTTTTAAAATCAATCTATTAAAAATATTTACATGATGATATAAGCAACCACTCTTTTCCTGAATTATATAAGCAAAAGTGTAAAAAAAAAAAAG
Unaligned ( gi|3 ): TTTTCTAATCAAGACTTTATTTCAAATCAATTGGCTAGCAGGTCTAAACAATCAACTCTTGACAAGTTTTTATAAATATACTTTAACATGTACACTGTATTTATTCGTGCGTCTGTATGTGATTTGACTGGTTTGTGTTTGTAGGATGTGGTATTGTTTGAGAATAAAGCCTTATTTGTAATAAAACAAATAACCGCATGCATGGAATTTTTAAAATTAATTATTAACGAAGAATATTTACATGAATGAATAAAGCAACCACTCTGTCCTGAATTAATAAGCAAAAATTAAAAAAAAAAA
Unaligned ( gi|4 ): CTGATCAGACTTTATTTAATCTTACGGTAGCAGTCAAAACAATCAACTCTTGTTACAATTTTTAAATTACTTTAAACATGTTACACTGCTTATTTTAGTTCGTGCGGTCTGTAACGTGATTGACTGCGTTTGTGTTTGTAGATGTGTGTAATTGTTTGAATAATCCTTATTGTTAGAAAACAAATTAACCATTGCTGCGATTGGTTTTTGAAAATGTCAATCTAATTAACGAATAATATTTACATGAATGATATAAAGCAACACTCTTTTCCTGAATATATAAGCAA
Unaligned ( gi|20 ): TTGTAATTTATTAATTTTCCAGTGAAAAATAAGAGTTAAATATTTACACTTGGTAAATTTAGGGGGGGGGGGGCGCGAGTGCCCCTCCCTAAATCCGCCACTG
Alignments
lowQualScore : 1111 6666666666666666666666666 11111111 11111111 1111111111 111111111111 111 1111 1111111
lowQualScore : 55 55 555 3 2 5 0 0000 44 3 3 0000000000000000000000000 2 5 33 2 33 00000000 55555555 3 3 666 7777 4444444444 3 3 555555555555 3 00 7777 444 333 3 888 999 77777 0 44 111 2 2 555 77777 2222 0 77777 1111111 0 6666 444 3 55 3 3 3
lowQualScore : .. .. ... . . . . .... .. . . ......................... . . .. . .. ........ ........ . . ... .... .......... . . ............ . .. .... ... ... . ... ... ..... . .. ... . . ... ..... .... . ..... ....... . .... ... . .. . . .
lowQualScore : 00 00 555 1 9 7 1 4444 66 3 3 8888888888888888888888888 7 3 77 7 77 44444444 44444444 3 6 444 7777 8888888888 6 6 888888888888 1 88 8888 666 222 1 555 666 77777 2 22 555 9 9 000 11111 9999 4 11111 9999999 8 5555 777 1 55 1 1 1
consensus : CCGACTC--GTGT--GT--CGA-TG-T-GCTGT----GCTTTT--GT-T-TTG--TT----GTTTTTT-T--------CATGGCATGGG-T-G--CATTAACTGA-GATCCAA-NGTAA--------CATTAA--------TGC-TAGA-AA---G----T------GT--TTACAA-A-AAT------------C-TGGACAGTAA-T--TGC-A-T-G-GAATTTT---CCAA---AGA-----ACAACC--ACG---TTT-TCATGAA-T---GGACG-----A----TAGT-----GCTCA-----GGGAC----TGTCCT--T-TACTCA-TC-GAGCG-AAAATCAGTAAACATT
Reference ( family-263 ) : CCGACTC--GTGT--GT--CGA-TG-T-GCTGT----GCTTTT--GT-T-TTG--TT----GTTTTTTGT--------CATGGCATGGG-T-G--CATTAACTGA-GATCCAA-NGTAA--------CATTAA--------TGC-TAGA-AA---G----T------GT--TTACAA-A-AAT------------C-TGGACAGTAA-T--TGC-A-T-G-GAATTTT---CCAA---AGA-----ACAACC--ACG---TTT-TCATGAA-T---GGACG-----A----TAGT-----GCTCA-----GGGAC----TGTCCT--T-TACTCA-TC-GAGCG-AAAATCAGTAAACATT
gi|10 : C--GTGT--GT--CAA-TG-T-GATGT----GCTTCT--GT-T-TTG--TT---------TT-T--------CGTGGCATGGG-T-G--TATTTACTGA-GATCCAA-GGTAA--------CATCAA--------TGC-TAAA-AA---G----T------AT--TTACTA-A-TAC------------C-TAGACAGT-T-T--TGC-A-T-G-GAATTTT---CCAA---AGAAGTTTAGAACA--ACA---TTT-TCATGAA-T---GGACG-----ATAAGTAAT-----GCT-------GGTACTGCATGTCCT--G-T--TGA-TC-GAGCA-AAAATCAGTAAATAT
gi|11 : CCGACTC--GTGC--GT--TGT-TA-T-GATAT-------TTT--GA-T-TTG--TT--------TTT---------------CATGGG-T-G--CACTAACTAA-GATGCAA-GGTAA--------TATTAA--------TGC-TAAA-AATTTT----T------TT--TTACAA-A-AAT------------A-TAGGTAG-------TGT-A-T-T-GAATTTT---CCA------A-----ACAA------GT--TTT-TCATGAA-T---GGACA-----A----TAAT-----
gi|12 : ctc--GTGT--GT----G-TG-T-GTTGTTTTTGCTTTT--GTAT-TTG--TT----TTTTTTT-T--------CATGG---------------TAAAAGA-AATCAAA-C-TAC--------TGTTAA--------TGC-TCAA-AA---G----T------AT--TTACAA-ATAATTGATGACAATAAC-TGGATAGTAA-T--TGC-A-C-G-ACATTTT---CCAG---AAA-----GAAGTC--AGA---TTT-TC----A-T---GGACG-----A----TAAT-----GCTC----------C----TGT--------------TC-AAGCG-ATAATTACTAAATATTaaatataatgatcctgcatgacttggtgatgatcgaacaaaaatgactaaatattg
gi|13 : tCCGACTC--GTGT--GT--AGA-TG-T-GCTGa
gi|13 : ctTGGCATGGG-T-G--CATTGACTGA-GATCCAA-TGTAA--------CATTAAATCATTAATCT-TAGA-AA---G----TACCTTTGTACTTACAA-A-AAG------------C-TGGACAGTAA-T--T---------------T---C--A---AGG-----ACAACC--AAA---TGT-TCATGAT-T---AGACG-----A----TATT-----GCTCA-----GGGAC----TGTCCT--T-TACTCA-TC-GAGAG-AAAATCAGTAAACATTgcatgggtgcattgactgagatccaatgtaacattaaatcattaatcttagaaagtacctttgtacttacaaaaagctggacagtaatttcaaggacaaccaaatgttcatgattagacgatattgctcagggactgtcctttactcatcgagagaaaatcagtaaacatt
gi|14 : ctccgactcgtgtgtagatgtgcCCGACTC--GTGT--GT--AGA-TG-T-GCTG
gi|14 : TGGCATGGG-T-G--CATTGACTGA-GATCCAA-TGTAACATTAAATCATTAA--------TCT-TAGA-AA---GTACCT------GTACTTACAA-A-AAG------------C-TGGACAGTAA------------------TTT---C--A---AGG-----ACAACC--AAA---TGT-TCATGAT-T---AGACG-----A----TATT-----GC-CA-----GGGAC----TGTCC---T-TACTCA-TC-GAGAGAAAAATCAGTAAACATTgcatgggtgcattgactgagatccaatgtaacattaaatcattaatcttagaaagtacctgtacttacaaaaagctggacagtaatttcaaggacaaccaaatgttcatgattagacgatattgccagggactgtccttactcatcgagagaaaaatcagtaaacatt
gi|15 : ccgactcgtgtgtagatgtgcGA-TG-T-TCTGT----GCTTTT--GT-T-TTA--TT------TTGTT-T--------CATGGCATGGG-T-G--CAGTAACTGA-GATCCAA-TGTAC--------CATTAA--------TGC-TA
gi|15 : ggggggctgccccctctaaatccgccactgT-TCATGAA-TTACAGACG-----A----TAGT-----GCTCA-----GGGAC----TGTCCT--T-TACTCA-TC-GAGAG-AAAATCAGTAAACATTttgttcatgaattacagacgatagtgctcagggactgtcctttactcatcgagagaaaatcagtaaacatt
gi|16 : ggggggctgccccctctaaatccgccactggatgttctgtgcttttgttttattttgtttcatggcatgggtgcagtaactgagatccaatgtaccattaatgctattgACAACA-AAT------------C-TGGACAATAA-T--TTC-A-T-G-GAATTTTCCCCCAA---AGA-----AC-ACC--ACA---TTT-TCATGAA-T---AGACG-----ATC--TAGT-----ACTCATGCAGAGGAC----TGGTAT--T-T-TTCA-TC-GAGCG-AAA
gi|17 : aT------------C-TGGATAAAAA-A--TTT-A-T-G-GAATTTT---CCAA---AGA-----ACAACTGTACA---TTT-TTATGAA-T---GGACG-----A----TAGT-----GATCA-----GGGAC----TGTCCT--T-TGCTCA-TC-GTGCG-AAAAACAGTAAACATT
gi|18 : AT------------C-TGGACAGTCA-TACTGT-AAC-GAGAGTTTTG--TCAG---AGA-----CTCACA--GGG---TTTATCATG--------GACG-----A----TAAT-----GC---------------------CT--TGTATCCA-TCTGAGCG-AAAATTAGTGAATATT
gi|19 : tggatCGACTT--GTG---GTTCCGACTG-TCGATGT----GCTTTT--AT-T-TTGG-TT----TTTTTTCCC--------CATGGTATGGG-TTG--CATTACCTGA-GATCCAA-TGTAA--------CATTAA--------TGA-TAGA-AA---G----T------GT--
gi|21 : GA-TA-T-GCTGT----GCTGTG--GT-T-TTG--TT----------TAT--------TATGGCATGGG-T-G--CATTTACTGA-GATCCAA-AGT
gi|22 : ccctcccccgact-T-GATGT----GCTTTT--GT-T-TTGATTT----GTTTTT-----------CATGGCATGGG-T-G--CATTAACTGA-GATCCAA-GGTAA--------Ct
gi|23 : cccccgacACGGG-T-G--CATAAACTGA-GATCCAA-GGTAA--------CA
gi|5 : acccccgactcttgtgtgcctgttccgcgCCGACGT--GTGTTGGT--CGA-TGTT-GCGGTG---GCTTTTTGGT-TATTG--CTCTTGGTTTTTTGTTCTTTTC-CCTGGCATGGGATGG--CATTAACTGA-GATCCAATTGTAA--------CATTAAT-------TGC-TAGACAA---G----T------GT--TTAC-A-A-AAT------------C-TGGACAGTAATT--TGC-A-TGG-GAATTTT---CCAATTTAGA-----ACAACC--ACGTTTTTT-TTATCAATT---AGACG-----AT---TAGT-----GCTCA-----GGGAC----TGTCCT--T-TACTCATTT-GAGCG-AAAATCAGTAAACACTat
gi|6 : ccCCGACTT--GTGT--GT--CGA-TG-T-GCTGT----GCTTTT--GT-T-TTGC-TT----GTTTTTTGTTCTTTTCCCATGGCATGGG-T-G--CATTAACTGA-GATCCAA-TGTAA--------CATTAT--------TGC-TAGA-AA---G----T------GT--TTACAA-A-AAT------------C-TGGACAGTAA-T--TGC-A-T-G-GAATTTT---CCAATT-AGA-----ACAACC--ACG---TTT-TTATCAA-T---AGACG-----A----TAGT-----GCTCA-----GGGAC----TGTCCT--T-TACTCA-TC-GAGCG-AAAATCAGTAAACACT
gi|7 : CCGACTT--GTGT--GT--CGA-AG-TCGATGT----GCTTTT--GT-T-TT-------------TTT-T--------CATGGTATGGG-T-GTGCATTAACTGAAGATCTAA-TGTAA--------CATTAT--------TGC-TAGA-AA---G----T------TG--TTACAA-A-AAT------------CCTTGACCGTAA-T--TTCCA-T-G-GAATTAT---CCGA---G---------AACC--ACA---TTT-TCATGAA-T---ATGCG-----A----TAGTACTCTGCTCA-----AGAAC----TGTCCA--T-TACTCA-TC-GTTCG-AAAATCAGTAAACATT
gi|8 : ccctccCCGACTC--GTGT--GT--CGA-TG-T-GCTGT----GCTTTT--GT-T-TTG--AT----ATGTTTT-T--------CATGGCATGGG-T-G--CACTAACTGA-GATCCAA-GGTAA--------CATTAA--------TGCTTAAA-AA---G----T------TT--TTACAA-A-ACT------------C-TAGACAG-------TGT-A-T-G-GGATTTT---CCAA---AG--------------ACGT--TTT-TCATGAA-T---GGGCGATAATA----TAAT-----GTTCC-----TGCA-----TGTCCTGAT-TA-TGA-TC-GAGCA-AAAATCACTAAATATT
gi|9 : cccCCGACTAAAGTGT--GC--CGA-TG-T-GCTGT----GCTTTT--GT-T-T-G--TTTGG-GTTTTTTATGG------TATGG-ACGGG-T-A--CATTAACTGA-GATATAA-GGTAA--------CATTAA--------TGC-TAGA-AA---G----T------AT--CAACAA-A-AAT------------C-TGGACAGTAA-T--GAC-A-T-G-GAATTTT---CCAG---AGA-----ATAACC--ACA---TTT-TCATGAA-T---GGACG-----A----TAAT-----GCTT----------C----TG---------A--CA-TC-GAGCG-AAAATCAGTAAATATT
5 sequences could not be aligned to this reference sequence:
Unaligned ( gi|1 ): AATGTTTTACTAATACGAAATTTTATTAATAATCAACGGCTGCAGGTCTAAACAATCAATCTGACAAGTTTTTAAAATATCTTACATGTACACTGTATTTATTCTGCTCTTGTACGTGAAATTTGAACTGGTTTGTGTGTTGTAGATGGTGTATGATTTAGAATATAAAGGCCTTATTGTCTAAATAAAGATATGTTGTACATAAACAATAACCATTGCTGAATATTATTAATTTTAAATCAATTCTTTCAAAGAAAATATTACATGATGATATAATCAACCACTCTTTTTGTTCTGAATTATTAGCAAAAAATGTAAAAAAAAAAAAA
Unaligned ( gi|2 ): AAATGTTTTTCTATAATCAGACTTTATTTCAAATCTATAGCGGCTAGCAGGTCTAAAAATCAACTCTTGACAATTTTTTTAAAAATAACTTTAACATGTACACTGTTTTTATTTCGTGTCTTGTACGTGATTTGACTGGTTTGTGTTTGTAGATGTGTGTATTGTTTGAAATAAAGCCTTATTGTTAATAAAACATAACATGCTGGATGTTTTAAAATCAATCTATTAAAAATATTTACATGATGATATAAGCAACCACTCTTTTCCTGAATTATATAAGCAAAAGTGTAAAAAAAAAAAAG
Unaligned ( gi|3 ): TTTTCTAATCAAGACTTTATTTCAAATCAATTGGCTAGCAGGTCTAAACAATCAACTCTTGACAAGTTTTTATAAATATACTTTAACATGTACACTGTATTTATTCGTGCGTCTGTATGTGATTTGACTGGTTTGTGTTTGTAGGATGTGGTATTGTTTGAGAATAAAGCCTTATTTGTAATAAAACAAATAACCGCATGCATGGAATTTTTAAAATTAATTATTAACGAAGAATATTTACATGAATGAATAAAGCAACCACTCTGTCCTGAATTAATAAGCAAAAATTAAAAAAAAAAA
Unaligned ( gi|4 ): CTGATCAGACTTTATTTAATCTTACGGTAGCAGTCAAAACAATCAACTCTTGTTACAATTTTTAAATTACTTTAAACATGTTACACTGCTTATTTTAGTTCGTGCGGTCTGTAACGTGATTGACTGCGTTTGTGTTTGTAGATGTGTGTAATTGTTTGAATAATCCTTATTGTTAGAAAACAAATTAACCATTGCTGCGATTGGTTTTTGAAAATGTCAATCTAATTAACGAATAATATTTACATGAATGATATAAAGCAACACTCTTTTCCTGAATATATAAGCAA
Unaligned ( gi|20 ): TTGTAATTTATTAATTTTCCAGTGAAAAATAAGAGTTAAATATTTACACTTGGTAAATTTAGGGGGGGGGGGGCGCGAGTGCCCCTCCCTAAATCCGCCACTG
Alignments
lowQualScore : 1111111111111 444444444444444444 11111111 11111111 1111111111 111111111111 111 1111 1111111
lowQualScore : 55 55 555 3 9999999 5555555555555 6666 0 2 333333333333333333 5555 33 5555 2 5 33 2 33 00000000 55555555 3 3 666 7777 4444444444 3 3 555555555555 3 00 7777 444 333 3 888 999 77777 0 44 111 2 2 555 77777 2222 0 77777 1111111 0 6666 444 3 55 3 3 3
lowQualScore : .. .. ... . ....... ............. .... . . .................. .... .. .... . . .. . .. ........ ........ . . ... .... .......... . . ............ . .. .... ... ... . ... ... ..... . .. ... . . ... ..... .... . ..... ....... . .... ... . .. . . .
lowQualScore : 00 00 555 1 5555555 7777777777777 1111 8 7 777777777777777777 7777 77 7777 7 3 77 7 77 44444444 44444444 3 6 444 7777 8888888888 6 6 888888888888 1 88 8888 666 222 1 555 666 77777 2 22 555 9 9 000 11111 9999 4 11111 9999999 8 5555 777 1 55 1 1 1
consensus : CCGACTC--GTGT--GT--CGA-TG-T-GC--TG-------------T----GCTTTTGT-TTTG--------T-TGT--TTTTT----C--ATGGCATGG----G-T-G--CATTAACTGA-GATCCAA-NGTAA--------CATTAA--------TGC-TAGA-AA---G----T------GT--TTACAA-A-AAT------------C-TGGACAGTAA-T--TGC-A-T-G-GAATTTT---CCAA---AGA-----ACAACC--ACG---TTT-TCATGAA-T---GGACG-----A----TAGT-----GCTCA-----GGGAC----TGTCCT--T-TACTCA-TC-GAGCG-AAAATCAGTAAACATT
Reference ( family-263 ) : CCGACTC--GTGT--GT--CGA-TG-T-GC--TG-------------T----GCTTTTGT-TTTG--------T-TGTT-TTTTT----C--ATGGCATGG----G-T-G--CATTAACTGA-GATCCAA-NGTAA--------CATTAA--------TGC-TAGA-AA---G----T------GT--TTACAA-A-AAT------------C-TGGACAGTAA-T--TGC-A-T-G-GAATTTT---CCAA---AGA-----ACAACC--ACG---TTT-TCATGAA-T---GGACG-----A----TAGT-----GCTCA-----GGGAC----TGTCCT--T-TACTCA-TC-GAGCG-AAAATCAGTAAACATT
gi|10 : C--GTGT--GT--CAA-TG-T-GA--TG-------------T----GCTTCTGT-TTTG--------T-T------TTT----C--GTGGCATGG----G-T-G--TATTTACTGA-GATCCAA-GGTAA--------CATCAA--------TGC-TAAA-AA---G----T------AT--TTACTA-A-TAC------------C-TAGACAGT-T-T--TGC-A-T-G-GAATTTT---CCAA---AGAAGTTTAGAACA--ACA---TTT-TCATGAA-T---GGACG-----ATAAGTAAT-----GCT-------GGTACTGCATGTCCT--G-T--TGA-TC-GAGCA-AAAATCAGTAAATAT
gi|11 : CCGACTC--GTGC--GT--TGT-TA-T-GA--TA-------------T-------TTTGA-TTTG--------T-T------TTT----C--ATGG---------G-T-G--CACTAACTAA-GATGCAA-GGTAA--------TATTAA--------TGC-TAAA-AATTTT----T------TT--TTACAA-A-AAT------------A-TAGGTAG-------TGT-A-T-T-GAATTTT---CCA------A-----ACAA------GT--TTT-TCATGAA-T---GGACA-----A----TAAT-----
gi|12 : ctc--GTGT--GT----G-TG-T-GT--TG-------------TTTTTGCTTTTGTATTTG--------T-TTTT-TTTTT----C--ATGG-------------------TAAAAGA-AATCAAA-C-TAC--------TGTTAA--------TGC-TCAA-AA---G----T------AT--TTACAA-ATAATTGATGACAATAAC-TGGATAGTAA-T--TGC-A-C-G-ACATTTT---CCAG---AAA-----GAAGTC--AGA---TTT-TC----A-T---GGACG-----A----TAAT-----GCTC----------C----TGT--------------TC-AAGCG-ATAATTACTAAATATTaaatataatgatcctgcatgacttggtgatgatcgaacaaaaatgactaaatattg
gi|13 : tCCGACTC--GTGT--GT--AGA-TG----------------------T----GCT---------------------------------------GGCATGG----G-T-G--CATTGACTGA-GATCCAA-TGTAA--------CATTAAATCATTAATCT-TAGA-AA---G----TACCTTTGTACTTACAA-A-AAG------------C-TGGACAGTAA-T--T---------------T---C--A---AGG-----ACAACC--AAA---TGT-TCATGAT-T---AGACG-----A----TATT-----GCTCA-----GGGAC----TGTCCT--T-TACTCA-TC-GAGAG-AAAATCAGTAAACATTa
gi|14 : ctCCGACTC--GTGT--GT--AGA-TG----------------------T----GCT---------------------------------------GGCATGG----G-T-G--CATTGACTGA-GATCCAA-TGTAACATTAAATCATTAA--------TCT-TAGA-AA---GTACCT------GTACTTACAA-A-AAG------------C-TGGACAGTAA------------------TTT---C--A---AGG-----ACAACC--AAA---TGT-TCATGAT-T---AGACG-----A----TATT-----GC-CA-----GGGAC----TGTCC---T-TACTCA-TC-GAGAGAAAAATCAGTAAACATT
gi|15 : GA-TG-T-TC--TG-------------T----GCTTTTGT-TTTA--------T-T--T-TGTTT----C--ATGGCATGG----G-T-G--CAGTAACTGA-GATCCAA-TGTAC--------CATTAA--------TGC-TA
gi|15 : ggggggctgccccctctaaatccgccactgT-TCATGAA-TTACAGACG-----A----TAGT-----GCTCA-----GGGAC----TGTCCT--T-TACTCA-TC-GAGAG-AAAATCAGTAAACATTttgttcatgaattacagacgatagtgctcagggactgtcctttactcatcgagagaaaatcagtaaacatt
gi|16 : ggggggctgccccctctaaatccgccactggatgttctgtgcttttgttttattttgtttcatggcatgggtgcagtaactgagatccaatgtaccattaatgctattgACAACA-AAT------------C-TGGACAATAA-T--TTC-A-T-G-GAATTTTCCCCCAA---AGA-----AC-ACC--ACA---TTT-TCATGAA-T---AGACG-----ATC--TAGT-----ACTCATGCAGAGGAC----TGGTAT--T-T-TTCA-TC-GAGCG-AAA
gi|17 : aT------------C-TGGATAAAAA-A--TTT-A-T-G-GAATTTT---CCAA---AGA-----ACAACTGTACA---TTT-TTATGAA-T---GGACG-----A----TAGT-----GATCA-----GGGAC----TGTCCT--T-TGCTCA-TC-GTGCG-AAAAACAGTAAACATT
gi|18 : AT------------C-TGGACAGTCA-TACTGT-AAC-GAGAGTTTTG--TCAG---AGA-----CTCACA--GGG---TTTATCATG--------GACG-----A----TAAT-----GC---------------------CT--TGTATCCA-TCTGAGCG-AAAATTAGTGAATATT
gi|19 : tggatCGACTT--GTG---GTTCCGACTG-TCGA--TG-------------T----GCTTTTAT-TTTG-----------GTT-TTTTTTCCCC--ATGGTATGG----G-TTG--CATTACCTGA-GATCCAA-TGTAA--------CATTAA--------TGA-TAGA-AA---G----T------GT--
gi|21 : GA-TA-T-GC--TG-------------T----GCTGTGGT-TTTG--------T-T------TAT----T--ATGGCATGG----G-T-G--CATTTACTGA-GATCCAA-AGT
gi|22 : ccctcccccgact-T-GA--TG-------------T----GCTTTTGT-TTTG--------A-TTTG-TTTTT----C--ATGGCATGG----G-T-G--CATTAACTGA-GATCCAA-GGTAA--------Ct
gi|23 : cccccgacT-CTTG--------TGTGCC-TGTTC----C--GCGAC--GG----G-T-G--CATAAACTGA-GATCCAA-GGTAA--------CA
gi|5 : acccccgacCCGACGT--GTGTTGGT--CGA-TGTT-GCGGTGGCTTTTTGGTTATT----GCTCTTGG-TTTT--------T-TGTTCTTTTC----C--CTGGCATGG----GATGG--CATTAACTGA-GATCCAATTGTAA--------CATTAAT-------TGC-TAGACAA---G----T------GT--TTAC-A-A-AAT------------C-TGGACAGTAATT--TGC-A-TGG-GAATTTT---CCAATTTAGA-----ACAACC--ACGTTTTTT-TTATCAATT---AGACG-----AT---TAGT-----GCTCA-----GGGAC----TGTCCT--T-TACTCATTT-GAGCG-AAAATCAGTAAACACTat
gi|6 : ccCCGACTT--GTGT--GT--CGA-TG-T-GC--TG-------------T----GCTTTTGT-TTTGCTTGTTTTT-TGTT-CTTTT----CCCATGGCATGG----G-T-G--CATTAACTGA-GATCCAA-TGTAA--------CATTAT--------TGC-TAGA-AA---G----T------GT--TTACAA-A-AAT------------C-TGGACAGTAA-T--TGC-A-T-G-GAATTTT---CCAATT-AGA-----ACAACC--ACG---TTT-TTATCAA-T---AGACG-----A----TAGT-----GCTCA-----GGGAC----TGTCCT--T-TACTCA-TC-GAGCG-AAAATCAGTAAACACT
gi|7 : CCGACTT--GTGT--GT--CGA-AG-TCGA--TG-------------T----GCTTTTGT-TTT-----------------TTTT----C--ATGGTATGG----G-T-GTGCATTAACTGAAGATCTAA-TGTAA--------CATTAT--------TGC-TAGA-AA---G----T------TG--TTACAA-A-AAT------------CCTTGACCGTAA-T--TTCCA-T-G-GAATTAT---CCGA---G---------AACC--ACA---TTT-TCATGAA-T---ATGCG-----A----TAGTACTCTGCTCA-----AGAAC----TGTCCA--T-TACTCA-TC-GTTCG-AAAATCAGTAAACATT
gi|8 : ccctccCCGACTC--GTGT--GT--CGA-TG-T-GC--TG-------------T----GCTTTTGT-TTTG--------A-TATG-TTTTT----C--ATGGCATGG----G-T-G--CACTAACTGA-GATCCAA-GGTAA--------CATTAA--------TGCTTAAA-AA---G----T------TT--TTACAA-A-ACT------------C-TAGACAG-------TGT-A-T-G-GGATTTT---CCAA---AG--------------ACGT--TTT-TCATGAA-T---GGGCGATAATA----TAAT-----GTTCC-----TGCA-----TGTCCTGAT-TA-TGA-TC-GAGCA-AAAATCACTAAATATT
gi|9 : cccCCGACTAAAGTGT--GC--CGA-TG-T-GC--TG-------------T----GCTTTTGT-TTGT--------T-TGGG-TTTTT----T--ATGGTATGGACGGG-T-A--CATTAACTGA-GATATAA-GGTAA--------CATTAA--------TGC-TAGA-AA---G----T------AT--CAACAA-A-AAT------------C-TGGACAGTAA-T--GAC-A-T-G-GAATTTT---CCAG---AGA-----ATAACC--ACA---TTT-TCATGAA-T---GGACG-----A----TAAT-----GCTT----------C----TG---------A--CA-TC-GAGCG-AAAATCAGTAAATATT
5 sequences could not be aligned to this reference sequence:
Unaligned ( gi|1 ): AATGTTTTACTAATACGAAATTTTATTAATAATCAACGGCTGCAGGTCTAAACAATCAATCTGACAAGTTTTTAAAATATCTTACATGTACACTGTATTTATTCTGCTCTTGTACGTGAAATTTGAACTGGTTTGTGTGTTGTAGATGGTGTATGATTTAGAATATAAAGGCCTTATTGTCTAAATAAAGATATGTTGTACATAAACAATAACCATTGCTGAATATTATTAATTTTAAATCAATTCTTTCAAAGAAAATATTACATGATGATATAATCAACCACTCTTTTTGTTCTGAATTATTAGCAAAAAATGTAAAAAAAAAAAAA
Unaligned ( gi|2 ): AAATGTTTTTCTATAATCAGACTTTATTTCAAATCTATAGCGGCTAGCAGGTCTAAAAATCAACTCTTGACAATTTTTTTAAAAATAACTTTAACATGTACACTGTTTTTATTTCGTGTCTTGTACGTGATTTGACTGGTTTGTGTTTGTAGATGTGTGTATTGTTTGAAATAAAGCCTTATTGTTAATAAAACATAACATGCTGGATGTTTTAAAATCAATCTATTAAAAATATTTACATGATGATATAAGCAACCACTCTTTTCCTGAATTATATAAGCAAAAGTGTAAAAAAAAAAAAG
Unaligned ( gi|3 ): TTTTCTAATCAAGACTTTATTTCAAATCAATTGGCTAGCAGGTCTAAACAATCAACTCTTGACAAGTTTTTATAAATATACTTTAACATGTACACTGTATTTATTCGTGCGTCTGTATGTGATTTGACTGGTTTGTGTTTGTAGGATGTGGTATTGTTTGAGAATAAAGCCTTATTTGTAATAAAACAAATAACCGCATGCATGGAATTTTTAAAATTAATTATTAACGAAGAATATTTACATGAATGAATAAAGCAACCACTCTGTCCTGAATTAATAAGCAAAAATTAAAAAAAAAAA
Unaligned ( gi|4 ): CTGATCAGACTTTATTTAATCTTACGGTAGCAGTCAAAACAATCAACTCTTGTTACAATTTTTAAATTACTTTAAACATGTTACACTGCTTATTTTAGTTCGTGCGGTCTGTAACGTGATTGACTGCGTTTGTGTTTGTAGATGTGTGTAATTGTTTGAATAATCCTTATTGTTAGAAAACAAATTAACCATTGCTGCGATTGGTTTTTGAAAATGTCAATCTAATTAACGAATAATATTTACATGAATGATATAAAGCAACACTCTTTTCCTGAATATATAAGCAA
Unaligned ( gi|20 ): TTGTAATTTATTAATTTTCCAGTGAAAAATAAGAGTTAAATATTTACACTTGGTAAATTTAGGGGGGGGGGGGCGCGAGTGCCCCTCCCTAAATCCGCCACTG
Alignments
lowQualScore : 111111111111111111 44444444444444444444444444444444 11111111 11111111 1111111111 111111111111 111 1111 1111111
lowQualScore : 55 55 555 3 2 5 444 999999999999999999 2 00000000000000000000000000000000 5555 2 5 33 2 33 00000000 55555555 3 3 666 7777 4444444444 3 3 555555555555 3 00 7777 444 333 3 888 999 77777 0 44 111 2 2 555 77777 2222 0 77777 1111111 0 6666 444 3 55 3 3 3
lowQualScore : .. .. ... . . . ... .................. . ................................ .... . . .. . .. ........ ........ . . ... .... .......... . . ............ . .. .... ... ... . ... ... ..... . .. ... . . ... ..... .... . ..... ....... . .... ... . .. . . .
lowQualScore : 00 00 555 1 9 7 000 888888888888888888 9 11111111111111111111111111111111 7777 7 3 77 7 77 44444444 44444444 3 6 444 7777 8888888888 6 6 888888888888 1 88 8888 666 222 1 555 666 77777 2 22 555 9 9 000 11111 9999 4 11111 9999999 8 5555 777 1 55 1 1 1
consensus : CCGACTC--GTGT--GT--CGA-TG-T-GC--TG-------------T----GCTTTTGT-TTTG--TT----T--TTTTT----------C---ATGGCATGG----G-T-G--CATTAACTGA-GATCCAA-NGTAA--------CATTAA--------TGC-TAGA-AA---G----T------GT--TTACAA-A-AAT------------C-TGGACAGTAA-T--TGC-A-T-G-GAATTTT---CCAA---AGA-----ACAACC--ACG---TTT-TCATGAA-T---GGACG-----A----TAGT-----GCTCA-----GGGAC----TGTCCT--T-TACTCA-TC-GAGCG-AAAATCAGTAAACATT
Reference ( family-263 ) : CCGACTC--GTGT--GT--CGA-TG-T-GC--TG-------------T----GCTTTTGT-TTTG--TT---GT--TTTTT----------C---ATGGCATGG----G-T-G--CATTAACTGA-GATCCAA-NGTAA--------CATTAA--------TGC-TAGA-AA---G----T------GT--TTACAA-A-AAT------------C-TGGACAGTAA-T--TGC-A-T-G-GAATTTT---CCAA---AGA-----ACAACC--ACG---TTT-TCATGAA-T---GGACG-----A----TAGT-----GCTCA-----GGGAC----TGTCCT--T-TACTCA-TC-GAGCG-AAAATCAGTAAACATT
gi|10 : C--GTGT--GT--CAA-TG-T-GA--TG-------------T----GCTTCTGT-TTTG--TT---------TTT----------C---GTGGCATGG----G-T-G--TATTTACTGA-GATCCAA-GGTAA--------CATCAA--------TGC-TAAA-AA---G----T------AT--TTACTA-A-TAC------------C-TAGACAGT-T-T--TGC-A-T-G-GAATTTT---CCAA---AGAAGTTTAGAACA--ACA---TTT-TCATGAA-T---GGACG-----ATAAGTAAT-----GCT-------GGTACTGCATGTCCT--G-T--TGA-TC-GAGCA-AAAATCAGTAAATAT
gi|11 : CCGACTC--GTGC--GT--TGT-TA-T-GA--TA-------------T-------TTTGA-TTTG--TT---------TTT----------C---ATGG---------G-T-G--CACTAACTAA-GATGCAA-GGTAA--------TATTAA--------TGC-TAAA-AATTTT----T------TT--TTACAA-A-AAT------------A-TAGGTAG-------TGT-A-T-T-GAATTTT---CCA------A-----ACAA------GT--TTT-TCATGAA-T---GGACA-----A----TAAT-----
gi|12 : ctc--GTGT--GT----G-TG-T-GT--TG-------------TTTTTGCTTTTGTATTTG--TT---TT--TTTTT----------T-------CATGG--------------TAAAAGA-AATCAAA-C-TAC--------TGTTAA--------TGC-TCAA-AA---G----T------AT--TTACAA-ATAATTGATGACAATAAC-TGGATAGTAA-T--TGC-A-C-G-ACATTTT---CCAG---AAA-----GAAGTC--AGA---TTT-TC----A-T---GGACG-----A----TAAT-----GCTC----------C----TGT--------------TC-AAGCG-ATAATTACTAAATATTaaatataatgatcctgcatgacttggtgatgatcgaacaaaaatgactaaatattg
gi|13 : tCCGACTC--GTGT--GT--AGA-TG-T-GC--TG----------------------------------------------------------------GCATGG----G-T-G--CATTGACTGA-GATCCAA-TGTAA--------CATTAAATCATTAATCT-TAGA-AA---G----TACCTTTGTACTTACAA-A-AAG------------C-TGGACAGTAA-T--T---------------T---C--A---AGG-----ACAACC--AAA---TGT-TCATGAT-T---AGACG-----A----TATT-----GCTCA-----GGGAC----TGTCCT--T-TACTCA-TC-GAGAG-AAAATCAGTAAACATTa
gi|14 : ctCCGACTC--GTGT--GT--AGA-TG-T-GC--TG----------------------------------------------------------------GCATGG----G-T-G--CATTGACTGA-GATCCAA-TGTAACATTAAATCATTAA--------TCT-TAGA-AA---GTACCT------GTACTTACAA-A-AAG------------C-TGGACAGTAA------------------TTT---C--A---AGG-----ACAACC--AAA---TGT-TCATGAT-T---AGACG-----A----TATT-----GC-CA-----GGGAC----TGTCC---T-TACTCA-TC-GAGAGAAAAATCAGTAAACATT
gi|15 : GA-TG-T-TC--TG-------------T----GCTTTTGT-TTTA--TT----T--TGTTT----------C---ATGGCATGG----G-T-G--CAGTAACTGA-GATCCAA-TGTAC--------CATTAA--------TGC-TA
gi|15 : ggggggctgccccctctaaatccgccactgT-TCATGAA-TTACAGACG-----A----TAGT-----GCTCA-----GGGAC----TGTCCT--T-TACTCA-TC-GAGAG-AAAATCAGTAAACATTttgttcatgaattacagacgatagtgctcagggactgtcctttactcatcgagagaaaatcagtaaacatt
gi|16 : ggggggctgccccctctaaatccgccactggatgttctgtgcttttgttttattttgtttcatggcatgggtgcagtaactgagatccaatgtaccattaatgctattgACAACA-AAT------------C-TGGACAATAA-T--TTC-A-T-G-GAATTTTCCCCCAA---AGA-----AC-ACC--ACA---TTT-TCATGAA-T---AGACG-----ATC--TAGT-----ACTCATGCAGAGGAC----TGGTAT--T-T-TTCA-TC-GAGCG-AAA
gi|17 : aT------------C-TGGATAAAAA-A--TTT-A-T-G-GAATTTT---CCAA---AGA-----ACAACTGTACA---TTT-TTATGAA-T---GGACG-----A----TAGT-----GATCA-----GGGAC----TGTCCT--T-TGCTCA-TC-GTGCG-AAAAACAGTAAACATT
gi|18 : AT------------C-TGGACAGTCA-TACTGT-AAC-GAGAGTTTTG--TCAG---AGA-----CTCACA--GGG---TTTATCATG--------GACG-----A----TAAT-----GC---------------------CT--TGTATCCA-TCTGAGCG-AAAATTAGTGAATATT
gi|19 : tggatCGACTT--GTG---GTTCCGACTG-TCGA--TG-------------T----GCTTTTAT-TTTG--GT---TT--TTTTT----------CCCCATGGTATGG----G-TTG--CATTACCTGA-GATCCAA-TGTAA--------CATTAA--------TGA-TAGA-AA---G----T------GT--
gi|21 : GA-TA-T-GC--TG-------------T----GCTGTGGT-TTTG--TT---------TAT----------T---ATGGCATGG----G-T-G--CATTTACTGA-GATCCAA-AGT
gi|22 : ccctcccccgact-T-GA--TG-------------T----GCTTTTGT-TTTGATTT---GT--TTT-T----------C---ATGGCATGG----G-T-G--CATTAACTGA-GATCCAA-GGTAA--------Ct
gi|23 : cccccgacACGG----G-T-G--CATAAACTGA-GATCCAA-GGTAA--------CA
gi|5 : acccccgactcttgtgtgcctgttccgcgCCGACGT--GTGTTGGT--CGA-TGTT-GCGGTGGCTTTTTGGTTATT----GCTCTTGG-TTTT--TT---GTTCTTTTC----------C---CTGGCATGG----GATGG--CATTAACTGA-GATCCAATTGTAA--------CATTAAT-------TGC-TAGACAA---G----T------GT--TTAC-A-A-AAT------------C-TGGACAGTAATT--TGC-A-TGG-GAATTTT---CCAATTTAGA-----ACAACC--ACGTTTTTT-TTATCAATT---AGACG-----AT---TAGT-----GCTCA-----GGGAC----TGTCCT--T-TACTCATTT-GAGCG-AAAATCAGTAAACACTat
gi|6 : ccCCGACTT--GTGT--GT--CGA-TG-T-GC--TG-------------T----GCTTTTGT-TTTGC-TT---GT--TTTTTGTTCTTTTCCC---ATGGCATGG----G-T-G--CATTAACTGA-GATCCAA-TGTAA--------CATTAT--------TGC-TAGA-AA---G----T------GT--TTACAA-A-AAT------------C-TGGACAGTAA-T--TGC-A-T-G-GAATTTT---CCAATT-AGA-----ACAACC--ACG---TTT-TTATCAA-T---AGACG-----A----TAGT-----GCTCA-----GGGAC----TGTCCT--T-TACTCA-TC-GAGCG-AAAATCAGTAAACACT
gi|7 : CCGACTT--GTGT--GT--CGA-AG-TCGA--TG-------------T----GCTTTTGT-TTT-------------TTTT----------C---ATGGTATGG----G-T-GTGCATTAACTGAAGATCTAA-TGTAA--------CATTAT--------TGC-TAGA-AA---G----T------TG--TTACAA-A-AAT------------CCTTGACCGTAA-T--TTCCA-T-G-GAATTAT---CCGA---G---------AACC--ACA---TTT-TCATGAA-T---ATGCG-----A----TAGTACTCTGCTCA-----AGAAC----TGTCCA--T-TACTCA-TC-GTTCG-AAAATCAGTAAACATT
gi|8 : ccctccCCGACTC--GTGT--GT--CGA-TG-T-GC--TG-------------T----GCTTTTGT-TTTG--AT---ATG-TTTTT----------C---ATGGCATGG----G-T-G--CACTAACTGA-GATCCAA-GGTAA--------CATTAA--------TGCTTAAA-AA---G----T------TT--TTACAA-A-ACT------------C-TAGACAG-------TGT-A-T-G-GGATTTT---CCAA---AG--------------ACGT--TTT-TCATGAA-T---GGGCGATAATA----TAAT-----GTTCC-----TGCA-----TGTCCTGAT-TA-TGA-TC-GAGCA-AAAATCACTAAATATT
gi|9 : cccCCGACTAAAGTGT--GC--CGA-TG-T-GC--TG-------------T----GCTTTTGT-TT-G--TTTGGGT--TTTTT--------------ATGGTATGGACGGG-T-A--CATTAACTGA-GATATAA-GGTAA--------CATTAA--------TGC-TAGA-AA---G----T------AT--CAACAA-A-AAT------------C-TGGACAGTAA-T--GAC-A-T-G-GAATTTT---CCAG---AGA-----ATAACC--ACA---TTT-TCATGAA-T---GGACG-----A----TAAT-----GCTT----------C----TG---------A--CA-TC-GAGCG-AAAATCAGTAAATATT
5 sequences could not be aligned to this reference sequence:
Unaligned ( gi|1 ): AATGTTTTACTAATACGAAATTTTATTAATAATCAACGGCTGCAGGTCTAAACAATCAATCTGACAAGTTTTTAAAATATCTTACATGTACACTGTATTTATTCTGCTCTTGTACGTGAAATTTGAACTGGTTTGTGTGTTGTAGATGGTGTATGATTTAGAATATAAAGGCCTTATTGTCTAAATAAAGATATGTTGTACATAAACAATAACCATTGCTGAATATTATTAATTTTAAATCAATTCTTTCAAAGAAAATATTACATGATGATATAATCAACCACTCTTTTTGTTCTGAATTATTAGCAAAAAATGTAAAAAAAAAAAAA
Unaligned ( gi|2 ): AAATGTTTTTCTATAATCAGACTTTATTTCAAATCTATAGCGGCTAGCAGGTCTAAAAATCAACTCTTGACAATTTTTTTAAAAATAACTTTAACATGTACACTGTTTTTATTTCGTGTCTTGTACGTGATTTGACTGGTTTGTGTTTGTAGATGTGTGTATTGTTTGAAATAAAGCCTTATTGTTAATAAAACATAACATGCTGGATGTTTTAAAATCAATCTATTAAAAATATTTACATGATGATATAAGCAACCACTCTTTTCCTGAATTATATAAGCAAAAGTGTAAAAAAAAAAAAG
Unaligned ( gi|3 ): TTTTCTAATCAAGACTTTATTTCAAATCAATTGGCTAGCAGGTCTAAACAATCAACTCTTGACAAGTTTTTATAAATATACTTTAACATGTACACTGTATTTATTCGTGCGTCTGTATGTGATTTGACTGGTTTGTGTTTGTAGGATGTGGTATTGTTTGAGAATAAAGCCTTATTTGTAATAAAACAAATAACCGCATGCATGGAATTTTTAAAATTAATTATTAACGAAGAATATTTACATGAATGAATAAAGCAACCACTCTGTCCTGAATTAATAAGCAAAAATTAAAAAAAAAAA
Unaligned ( gi|4 ): CTGATCAGACTTTATTTAATCTTACGGTAGCAGTCAAAACAATCAACTCTTGTTACAATTTTTAAATTACTTTAAACATGTTACACTGCTTATTTTAGTTCGTGCGGTCTGTAACGTGATTGACTGCGTTTGTGTTTGTAGATGTGTGTAATTGTTTGAATAATCCTTATTGTTAGAAAACAAATTAACCATTGCTGCGATTGGTTTTTGAAAATGTCAATCTAATTAACGAATAATATTTACATGAATGATATAAAGCAACACTCTTTTCCTGAATATATAAGCAA
Unaligned ( gi|20 ): TTGTAATTTATTAATTTTCCAGTGAAAAATAAGAGTTAAATATTTACACTTGGTAAATTTAGGGGGGGGGGGGCGCGAGTGCCCCTCCCTAAATCCGCCACTG
Alignments
lowQualScore : 11111111 1111111 1111 333333333333333333333333333 11111111 11111111 1111111111 111111111111 1111 1111111
lowQualScore : 55 33333333 55 0 2222222 0 77777 2222 555 2 000000000000000000000000000 5555 5 66 2 33 00000000 22222222 3 3 3 666 7777 4444444444 3 3 555555555555 3 00 444 7777 3 3 3 888 999 77777 0 44 6 2 555 777 77777 0000 2 0 77777 1111111 0 6666 444 3 55 3 3 3
lowQualScore : .. ........ .. . ....... . ..... .... ... . ........................... .... . .. . .. ........ ........ . . . ... .... .......... . . ............ . .. ... .... . . . ... ... ..... . .. . . ... ... ..... .... . . ..... ....... . .... ... . .. . . .
lowQualScore : 00 22222222 00 5 1111111 1 11111 1111 000 9 777777777777777777777777777 7777 3 33 7 77 44444444 11111111 3 3 6 444 7777 8888888888 6 6 888888888888 1 88 777 7777 1 1 1 555 666 77777 2 22 2 9 000 999 11111 0000 9 4 11111 9999999 8 5555 777 1 55 1 1 1
consensus : CCGACTC--GTG--------T--GTCGATGT-------GCT-----GT----GCTTTTG---T-TTT-G-T-TT---TTTTT----------CATGGCATGG----G-TG--CATTAACTGA-GATCCAAN-GTAA--------CATTAA--------T-GC-TAGA-AA---G----T------GT--TTACAA-A-AAT------------C-TGGACAGTAAT--T-GC-A-TG-G-AATTTT---CCAA---AGA-----ACAACC--ACG-TTT-TC---ATGAAT---GGACG-----A----T-AGT-----GCTCA-----GGGAC----TGTCCT--T-TACTCA-TC-GAGCG-AAAATCAGTAAACATT
Reference ( family-263 ) : CCGACTC--GTG--------T--GTCGATGT-------GCT-----GT----GCTTTTG---T-TTT-G-T-TT---TTTTT----------CATGGCATGG----G-TG--CATTAACTGA-GATCCAAN-GTAA--------CATTAA--------T-GC-TAGA-AA---G----T------GT--TTACAA-A-AAT------------C-TGGACAGTAAT--T-GC-A-TG-G-AATTTT---CCAA---AGA-----ACAACC--ACG-TTT-TC---ATGAAT---GGACG-----A----T-AGT-----GCTCA-----GGGAC----TGTCCT--T-TACTCA-TC-GAGCG-AAAATCAGTAAACATT
gi|10 : C--GTG--------T--GTCAATGT-------GAT-----GT----GCTTCTG---T-TTT-G-T-TT---TT-------------CGTGGCATGG----G-TG--TATTTACTGA-GATCCAAG-GTAA--------CATCAA--------T-GC-TAAA-AA---G----T------AT--TTACTA-A-TAC------------C-TAGACAGT-TT--T-GC-A-TG-G-AATTTT---CCAA---AGAAGTTTAGAACA--ACA-TTT-TC---ATGAAT---GGACG-----ATAAGT-AAT-----GCT-------GGTACTGCATGTCCT--G-T--TGA-TC-GAGCA-AAAATCAGTAAATAT
gi|11 : CCGACTC--GTG--------C--GTTGTTAT-------GAT-----AT-------TTTG---A-TTT-G-T-TT---TT------------------CATGG----G-TG--CACTAACTAA-GATGCAAG-GTAA--------TATTAA--------T-GC-TAAA-AATTTT----T------TT--TTACAA-A-AAT------------A-TAGGTAG------T-GT-A-TT-G-AATTTT---CCA------A-----ACAA------GTTTT-TC---ATGAAT---GGACA-----A----T-AAT-----
gi|12 : ctc--GTG--------T--GT--GTGT-------GTT-----GTTTTTGCTTTTG---TATTT-G-T-TT---TTTTT----------T-T--CATGG-------------TAAAAGA-AATCAAAC--TAC--------TGTTAA--------T-GC-TCAA-AA---G----T------AT--TTACAA-ATAATTGATGACAATAAC-TGGATAGTAAT--T-GC-A-CG-A-CATTTT---CCAG---AAA-----GAAGTC--AGA-TTT-TC-------AT---GGACG-----A----T-AAT-----GCTC----------C----TGT--------------TC-AAGCG-ATAATTACTAAATATTaaatataatgatcctgcatgacttggtgatgatcgaacaaaaatgactaaatattg
gi|13 : tCCGACTC--GTG--------T--GTAGATGT-------GCT-----G-------------------------------------------------GCATGG----G-TG--CATTGACTGA-GATCCAAT-GTAA--------CATTAAATCATTAAT-CT-TAGA-AA---G----TACCTTTGTACTTACAA-A-AAG------------C-TGGACAGTAAT--T----------------T---C--A---AGG-----ACAACC--AAA-TGT-TC---ATGATT---AGACG-----A----T-ATT-----GCTCA-----GGGAC----TGTCCT--T-TACTCA-TC-GAGAG-AAAATCAGTAAACATTa
gi|14 : ctCCGACTC--GTG--------T--GTAGATGT-------GCT-----G-------------------------------------------------GCATGG----G-TG--CATTGACTGA-GATCCAAT-GTAACATTAAATCATTAA--------T-CT-TAGA-AA---GTACCT------GTACTTACAA-A-AAG------------C-TGGACAGTAA------------------TTT---C--A---AGG-----ACAACC--AAA-TGT-TC---ATGATT---AGACG-----A----T-ATT-----GC-CA-----GGGAC----TGTCC---T-TACTCA-TC-GAGAGAAAAATCAGTAAACATT
gi|15 : GATGT-------TCT-----GT----GCTTTTG---T-TTT-A-T-TT---TGTTT----------CATGGCATGG----G-TG--CAGTAACTGA-GATCCAAT-GTAC--------CATTAA--------T-GC-TA
gi|15 : ggggggctgccccctctaaatccgccactgT-TC---ATGAATTACAGACG-----A----T-AGT-----GCTCA-----GGGAC----TGTCCT--T-TACTCA-TC-GAGAG-AAAATCAGTAAACATTttgttcatgaattacagacgatagtgctcagggactgtcctttactcatcgagagaaaatcagtaaacatt
gi|16 : ggggggctgccccctctaaatccgccactggatgttctgtgcttttgttttattttgtttcatggcatgggtgcagtaactgagatccaatgtaccattaatgctattgACAACA-AAT------------C-TGGACAATAAT--T-TC-A-TG-G-AATTTTCCCCCAA---AGA-----AC-ACC--ACA-TTT-TC---ATGAAT---AGACG-----ATC--T-AGT-----ACTCATGCAGAGGAC----TGGTAT--T-T-TTCA-TC-GAGCG-AAA
gi|17 : aT------------C-TGGATAAAAAA--T-TT-A-TG-G-AATTTT---CCAA---AGA-----ACAACTGTACA-TTT-TT---ATGAAT---GGACG-----A----T-AGT-----GATCA-----GGGAC----TGTCCT--T-TGCTCA-TC-GTGCG-AAAAACAGTAAACATT
gi|18 : AT------------C-TGGACAGTCATACT-GT-AACGAG-AGTTTTG--TCAG---AGA-----CTCACA--GGG-TTTATC---ATG-------GACG-----A----T-AAT-----GC---------------------CT--TGTATCCA-TCTGAGCG-AAAATTAGTGAATATT
gi|19 : tggatCGACTT--GTGGTTCCGACT--GTCGA------------T-----GT----GCTTTTA---T-TTTGG-T-TT---TTTTTCCC-------CATGGTATGG----GTTG--CATTACCTGA-GATCCAAT-GTAA--------CATTAA--------T-GA-TAGA-AA---G----T------GT--
gi|21 : GATAT-------GCT-----GT----GCTGTGG---T-TTT-G-T-TT---ATT-------------ATGGCATGG----G-TG--CATTTACTGA-GATCCAAA-GT
gi|22 : ccctcccccgactT-------GAT-----GT----GCTTTTG---T-TTT-GAT-TTG--TTTTT----------CATGGCATGG----G-TG--CATTAACTGA-GATCCAAG-GTAA--------Ct
gi|23 : cccccgacACGG----G-TG--CATAAACTGA-GATCCAAG-GTAA--------CA
gi|5 : acccccgactcttgtgtgcctgttccgcgCCGACGT--GTG--------TTGGTCGATGTTGCGGTGGCTTTTTGGTTATTGCTCTTGGTTT-TTT-G-T-TC---TTTTC----------CCTGGCATGG----GATGG-CATTAACTGA-GATCCAATTGTAA--------CATTAA--------TTGC-TAGACAA---G----T------GT--TTACAA-A-A-T------------C-TGGACAGTAAT--TTGC-A-TG-GGAATTTT---CCAATTTAGA-----ACAACC--ACG-TTT-TTTTTATCAATT--AGACG-----A----TTAGT-----GCTCA-----GGGAC----TGTCCT--T-TACTCATTT-GAGCG-AAAATCAGTAAACACTat
gi|6 : ccCCGACTT--GTG--------T--GTCGATGT-------GCT-----GT----GCTTTTG---T-TTT-G-C-TTGT-TTTTTGTTCTTTTCCCATGGCATGG----G-TG--CATTAACTGA-GATCCAAT-GTAA--------CATTAT--------T-GC-TAGA-AA---G----T------GT--TTACAA-A-AAT------------C-TGGACAGTAAT--T-GC-A-TG-G-AATTTT---CCAATT-AGA-----ACAACC--ACG-TTT-TT---ATCAAT---AGACG-----A----T-AGT-----GCTCA-----GGGAC----TGTCCT--T-TACTCA-TC-GAGCG-AAAATCAGTAAACACT
gi|7 : CCGACTT--GTG--------T--GTCGAAGTC------GAT-----GT----GCTTTTG---T-TTT-----------TTTT----------CATGGTATGG----G-TGTGCATTAACTGAAGATCTAAT-GTAA--------CATTAT--------T-GC-TAGA-AA---G----T------TG--TTACAA-A-AAT------------CCTTGACCGTAAT--T-TCCA-TG-G-AATTAT---CCGA---G---------AACC--ACA-TTT-TC---ATGAAT---ATGCG-----A----T-AGTACTCTGCTCA-----AGAAC----TGTCCA--T-TACTCA-TC-GTTCG-AAAATCAGTAAACATT
gi|8 : ccctccCCGACTC--GTG--------T--GTCGATGT-------GCT-----GT----GCTTTTG---T-TTT-GATATG---TTTTT----------CATGGCATGG----G-TG--CACTAACTGA-GATCCAAG-GTAA--------CATTAA--------T-GCTTAAA-AA---G----T------TT--TTACAA-A-ACT------------C-TAGACAG------T-GT-A-TG-G-GATTTT---CCAA---AG--------------ACGTTTT-TC---ATGAAT---GGGCGATAATA----T-AAT-----GTTCC-----TGCA-----TGTCCTGAT-TA-TGA-TC-GAGCA-AAAATCACTAAATATT
gi|9 : cccCCGACTAAAGTG--------T--GCCGATGT-------GCT-----GT----GCTTTTG---T-TT--G-T-TTGGGTTTTT----------TATGGTATGGACGGG-TA--CATTAACTGA-GATATAAG-GTAA--------CATTAA--------T-GC-TAGA-AA---G----T------AT--CAACAA-A-AAT------------C-TGGACAGTAAT--G-AC-A-TG-G-AATTTT---CCAG---AGA-----ATAACC--ACA-TTT-TC---ATGAAT---GGACG-----A----T-AAT-----GCTT----------C----TG---------A--CA-TC-GAGCG-AAAATCAGTAAATATT
5 sequences could not be aligned to this reference sequence:
Unaligned ( gi|1 ): AATGTTTTACTAATACGAAATTTTATTAATAATCAACGGCTGCAGGTCTAAACAATCAATCTGACAAGTTTTTAAAATATCTTACATGTACACTGTATTTATTCTGCTCTTGTACGTGAAATTTGAACTGGTTTGTGTGTTGTAGATGGTGTATGATTTAGAATATAAAGGCCTTATTGTCTAAATAAAGATATGTTGTACATAAACAATAACCATTGCTGAATATTATTAATTTTAAATCAATTCTTTCAAAGAAAATATTACATGATGATATAATCAACCACTCTTTTTGTTCTGAATTATTAGCAAAAAATGTAAAAAAAAAAAAA
Unaligned ( gi|2 ): AAATGTTTTTCTATAATCAGACTTTATTTCAAATCTATAGCGGCTAGCAGGTCTAAAAATCAACTCTTGACAATTTTTTTAAAAATAACTTTAACATGTACACTGTTTTTATTTCGTGTCTTGTACGTGATTTGACTGGTTTGTGTTTGTAGATGTGTGTATTGTTTGAAATAAAGCCTTATTGTTAATAAAACATAACATGCTGGATGTTTTAAAATCAATCTATTAAAAATATTTACATGATGATATAAGCAACCACTCTTTTCCTGAATTATATAAGCAAAAGTGTAAAAAAAAAAAAG
Unaligned ( gi|3 ): TTTTCTAATCAAGACTTTATTTCAAATCAATTGGCTAGCAGGTCTAAACAATCAACTCTTGACAAGTTTTTATAAATATACTTTAACATGTACACTGTATTTATTCGTGCGTCTGTATGTGATTTGACTGGTTTGTGTTTGTAGGATGTGGTATTGTTTGAGAATAAAGCCTTATTTGTAATAAAACAAATAACCGCATGCATGGAATTTTTAAAATTAATTATTAACGAAGAATATTTACATGAATGAATAAAGCAACCACTCTGTCCTGAATTAATAAGCAAAAATTAAAAAAAAAAA
Unaligned ( gi|4 ): CTGATCAGACTTTATTTAATCTTACGGTAGCAGTCAAAACAATCAACTCTTGTTACAATTTTTAAATTACTTTAAACATGTTACACTGCTTATTTTAGTTCGTGCGGTCTGTAACGTGATTGACTGCGTTTGTGTTTGTAGATGTGTGTAATTGTTTGAATAATCCTTATTGTTAGAAAACAAATTAACCATTGCTGCGATTGGTTTTTGAAAATGTCAATCTAATTAACGAATAATATTTACATGAATGATATAAAGCAACACTCTTTTCCTGAATATATAAGCAA
Unaligned ( gi|20 ): TTGTAATTTATTAATTTTCCAGTGAAAAATAAGAGTTAAATATTTACACTTGGTAAATTTAGGGGGGGGGGGGCGCGAGTGCCCCTCCCTAAATCCGCCACTG
Alignments
lowQualScore : 11111111 1111111 1111 333333333333333333333333333 11111111 11111111 1111111111 111111111111 1111 1111111
lowQualScore : 55 33333333 55 0 2222222 0 77777 2222 555 2 000000000000000000000000000 5555 5 66 2 33 00000000 22222222 3 3 3 666 7777 4444444444 3 3 555555555555 3 00 444 7777 3 3 3 888 999 77777 0 44 6 2 555 777 77777 0000 2 0 77777 1111111 0 6666 444 3 55 3 3 3
lowQualScore : .. ........ .. . ....... . ..... .... ... . ........................... .... . .. . .. ........ ........ . . . ... .... .......... . . ............ . .. ... .... . . . ... ... ..... . .. . . ... ... ..... .... . . ..... ....... . .... ... . .. . . .
lowQualScore : 00 22222222 00 5 1111111 1 11111 1111 000 9 777777777777777777777777777 7777 3 33 7 77 44444444 11111111 3 3 6 444 7777 8888888888 6 6 888888888888 1 88 777 7777 1 1 1 555 666 77777 2 22 2 9 000 999 11111 0000 9 4 11111 9999999 8 5555 777 1 55 1 1 1
consensus : CCGACTC--GTG--------T--GTCGATGT-------GCT-----GT----GCTTTTG---T-TTT-G-T-TT---TTTTT----------CATGGCATGG----G-TG--CATTAACTGA-GATCCAAN-GTAA--------CATTAA--------T-GC-TAGA-AA---G----T------GT--TTACAA-A-AAT------------C-TGGACAGTAAT--T-GC-A-TG-G-AATTTT---CCAA---AGA-----ACAACC--ACG-TTT-TC---ATGAAT---GGACG-----A----T-AGT-----GCTCA-----GGGAC----TGTCCT--T-TACTCA-TC-GAGCG-AAAATCAGTAAACATT
Reference ( family-263 ) : CCGACTC--GTG--------T--GTCGATGT-------GCT-----GT----GCTTTTG---T-TTT-G-T-TT---TTTTT----------CATGGCATGG----G-TG--CATTAACTGA-GATCCAAN-GTAA--------CATTAA--------T-GC-TAGA-AA---G----T------GT--TTACAA-A-AAT------------C-TGGACAGTAAT--T-GC-A-TG-G-AATTTT---CCAA---AGA-----ACAACC--ACG-TTT-TC---ATGAAT---GGACG-----A----T-AGT-----GCTCA-----GGGAC----TGTCCT--T-TACTCA-TC-GAGCG-AAAATCAGTAAACATT
gi|10 : C--GTG--------T--GTCAATGT-------GAT-----GT----GCTTCTG---T-TTT-G-T-TT---TT-------------CGTGGCATGG----G-TG--TATTTACTGA-GATCCAAG-GTAA--------CATCAA--------T-GC-TAAA-AA---G----T------AT--TTACTA-A-TAC------------C-TAGACAGT-TT--T-GC-A-TG-G-AATTTT---CCAA---AGAAGTTTAGAACA--ACA-TTT-TC---ATGAAT---GGACG-----ATAAGT-AAT-----GCT-------GGTACTGCATGTCCT--G-T--TGA-TC-GAGCA-AAAATCAGTAAATAT
gi|11 : CCGACTC--GTG--------C--GTTGTTAT-------GAT-----AT-------TTTG---A-TTT-G-T-TT---TT------------------CATGG----G-TG--CACTAACTAA-GATGCAAG-GTAA--------TATTAA--------T-GC-TAAA-AATTTT----T------TT--TTACAA-A-AAT------------A-TAGGTAG------T-GT-A-TT-G-AATTTT---CCA------A-----ACAA------GTTTT-TC---ATGAAT---GGACA-----A----T-AAT-----
gi|12 : ctc--GTG--------T--GT--GTGT-------GTT-----GTTTTTGCTTTTG---TATTT-G-T-TT---TTTTT----------T-T--CATGG-------------TAAAAGA-AATCAAAC--TAC--------TGTTAA--------T-GC-TCAA-AA---G----T------AT--TTACAA-ATAATTGATGACAATAAC-TGGATAGTAAT--T-GC-A-CG-A-CATTTT---CCAG---AAA-----GAAGTC--AGA-TTT-TC-------AT---GGACG-----A----T-AAT-----GCTC----------C----TGT--------------TC-AAGCG-ATAATTACTAAATATTaaatataatgatcctgcatgacttggtgatgatcgaacaaaaatgactaaatattg
gi|13 : tCCGACTC--GTG--------T--GTAGATGT-------GCT-----G-------------------------------------------------GCATGG----G-TG--CATTGACTGA-GATCCAAT-GTAA--------CATTAAATCATTAAT-CT-TAGA-AA---G----TACCTTTGTACTTACAA-A-AAG------------C-TGGACAGTAAT--T----------------T---C--A---AGG-----ACAACC--AAA-TGT-TC---ATGATT---AGACG-----A----T-ATT-----GCTCA-----GGGAC----TGTCCT--T-TACTCA-TC-GAGAG-AAAATCAGTAAACATTa
gi|14 : ctCCGACTC--GTG--------T--GTAGATGT-------GCT-----G-------------------------------------------------GCATGG----G-TG--CATTGACTGA-GATCCAAT-GTAACATTAAATCATTAA--------T-CT-TAGA-AA---GTACCT------GTACTTACAA-A-AAG------------C-TGGACAGTAA------------------TTT---C--A---AGG-----ACAACC--AAA-TGT-TC---ATGATT---AGACG-----A----T-ATT-----GC-CA-----GGGAC----TGTCC---T-TACTCA-TC-GAGAGAAAAATCAGTAAACATT
gi|15 : GATGT-------TCT-----GT----GCTTTTG---T-TTT-A-T-TT---TGTTT----------CATGGCATGG----G-TG--CAGTAACTGA-GATCCAAT-GTAC--------CATTAA--------T-GC-TA
gi|15 : ggggggctgccccctctaaatccgccactgT-TC---ATGAATTACAGACG-----A----T-AGT-----GCTCA-----GGGAC----TGTCCT--T-TACTCA-TC-GAGAG-AAAATCAGTAAACATTttgttcatgaattacagacgatagtgctcagggactgtcctttactcatcgagagaaaatcagtaaacatt
gi|16 : ggggggctgccccctctaaatccgccactggatgttctgtgcttttgttttattttgtttcatggcatgggtgcagtaactgagatccaatgtaccattaatgctattgACAACA-AAT------------C-TGGACAATAAT--T-TC-A-TG-G-AATTTTCCCCCAA---AGA-----AC-ACC--ACA-TTT-TC---ATGAAT---AGACG-----ATC--T-AGT-----ACTCATGCAGAGGAC----TGGTAT--T-T-TTCA-TC-GAGCG-AAA
gi|17 : aT------------C-TGGATAAAAAA--T-TT-A-TG-G-AATTTT---CCAA---AGA-----ACAACTGTACA-TTT-TT---ATGAAT---GGACG-----A----T-AGT-----GATCA-----GGGAC----TGTCCT--T-TGCTCA-TC-GTGCG-AAAAACAGTAAACATT
gi|18 : AT------------C-TGGACAGTCATACT-GT-AACGAG-AGTTTTG--TCAG---AGA-----CTCACA--GGG-TTTATC---ATG-------GACG-----A----T-AAT-----GC---------------------CT--TGTATCCA-TCTGAGCG-AAAATTAGTGAATATT
gi|19 : tggatCGACTT--GTGGTTCCGACT--GTCGA------------T-----GT----GCTTTTA---T-TTTGG-T-TT---TTTTTCCC-------CATGGTATGG----GTTG--CATTACCTGA-GATCCAAT-GTAA--------CATTAA--------T-GA-TAGA-AA---G----T------GT--
gi|21 : GATAT-------GCT-----GT----GCTGTGG---T-TTT-G-T-TT---ATT-------------ATGGCATGG----G-TG--CATTTACTGA-GATCCAAA-GT
gi|22 : ccctcccccgactT-------GAT-----GT----GCTTTTG---T-TTT-GAT-TTG--TTTTT----------CATGGCATGG----G-TG--CATTAACTGA-GATCCAAG-GTAA--------Ct
gi|23 : cccccgacACGG----G-TG--CATAAACTGA-GATCCAAG-GTAA--------CA
gi|5 : acccccgactcttgtgtgcctgttccgcgCCGACGT--GTG--------TTGGTCGATGTTGCGGTGGCTTTTTGGTTATTGCTCTTGGTTT-TTT-G-T-TC---TTTTC----------CCTGGCATGG----GATGG-CATTAACTGA-GATCCAATTGTAA--------CATTAA--------TTGC-TAGACAA---G----T------GT--TTACAA-A-A-T------------C-TGGACAGTAAT--TTGC-A-TG-GGAATTTT---CCAATTTAGA-----ACAACC--ACG-TTT-TTTTTATCAATT--AGACG-----A----TTAGT-----GCTCA-----GGGAC----TGTCCT--T-TACTCATTT-GAGCG-AAAATCAGTAAACACTat
gi|6 : ccCCGACTT--GTG--------T--GTCGATGT-------GCT-----GT----GCTTTTG---T-TTT-G-C-TTGT-TTTTTGTTCTTTTCCCATGGCATGG----G-TG--CATTAACTGA-GATCCAAT-GTAA--------CATTAT--------T-GC-TAGA-AA---G----T------GT--TTACAA-A-AAT------------C-TGGACAGTAAT--T-GC-A-TG-G-AATTTT---CCAATT-AGA-----ACAACC--ACG-TTT-TT---ATCAAT---AGACG-----A----T-AGT-----GCTCA-----GGGAC----TGTCCT--T-TACTCA-TC-GAGCG-AAAATCAGTAAACACT
gi|7 : CCGACTT--GTG--------T--GTCGAAGTC------GAT-----GT----GCTTTTG---T-TTT-----------TTTT----------CATGGTATGG----G-TGTGCATTAACTGAAGATCTAAT-GTAA--------CATTAT--------T-GC-TAGA-AA---G----T------TG--TTACAA-A-AAT------------CCTTGACCGTAAT--T-TCCA-TG-G-AATTAT---CCGA---G---------AACC--ACA-TTT-TC---ATGAAT---ATGCG-----A----T-AGTACTCTGCTCA-----AGAAC----TGTCCA--T-TACTCA-TC-GTTCG-AAAATCAGTAAACATT
gi|8 : ccctccCCGACTC--GTG--------T--GTCGATGT-------GCT-----GT----GCTTTTG---T-TTT-GATATG---TTTTT----------CATGGCATGG----G-TG--CACTAACTGA-GATCCAAG-GTAA--------CATTAA--------T-GCTTAAA-AA---G----T------TT--TTACAA-A-ACT------------C-TAGACAG------T-GT-A-TG-G-GATTTT---CCAA---AG--------------ACGTTTT-TC---ATGAAT---GGGCGATAATA----T-AAT-----GTTCC-----TGCA-----TGTCCTGAT-TA-TGA-TC-GAGCA-AAAATCACTAAATATT
gi|9 : cccCCGACTAAAGTG--------T--GCCGATGT-------GCT-----GT----GCTTTTG---T-TT--G-T-TTGGGTTTTT----------TATGGTATGGACGGG-TA--CATTAACTGA-GATATAAG-GTAA--------CATTAA--------T-GC-TAGA-AA---G----T------AT--CAACAA-A-AAT------------C-TGGACAGTAAT--G-AC-A-TG-G-AATTTT---CCAG---AGA-----ATAACC--ACA-TTT-TC---ATGAAT---GGACG-----A----T-AAT-----GCTT----------C----TG---------A--CA-TC-GAGCG-AAAATCAGTAAATATT
blockSeqs : AA GTTCCGAC TG TGCGGTG TTTTG TTTT GTT A GCTTGTTTTTTGTTCTTTTCCCA ACGG T TG A TT CATTAAAT ATCATTAA T T C TTT TACC ACCTTTGTAC C T TGATGACAATAA C TAC TGC A A G CCC TTT . GT T A TTT TAC ATAAT TC T ACTCT ATGCAGA . TGA G AC T T A
blockSeqs : . . . C . TATT . . GGTTTTTTTTCCCCA . A G . G . . . . . . . GTAC . . . . T TCC . . . G TT . . T . . T . . . . AG . T . AC . . .
blockSeqs : . . . . . . . . GTTTGGGTTTTTTA . . . . C . . . . . . . TT . . . . T GT . . . . . . . . . . . . . . . AG . T . AC . . .
blockSeqs : . . . . . . . . GATTTGTTTTTCA . . . . T . . . . . . . AT . . . . T GC . . . . . . . . . . . . . . . AG . T . GC . . .
blockSeqs : . . . . . . . . GATATGTTTTTCA . . . . T . . . . . . . GT . . . . A TC . . . . . . . . . . . . . . . AG . T . AT . . .
blockSeqs : . . . . . . . . ATTTTGTTTCA . . . . T . . . . . . . GT . . . . T TT . . . . . . . . . . . . . . . AG . T . AC . . .
blockSeqs : . . . . . . . . GTTCTTTTCCC . . . . T . . . . . . . GT . . . . T GT . . . . . . . . . . . . . . . AG . T . AC . . .
blockSeqs : . . . . . . . . GTTTTTTTTT . . . . A . . . . . . . TG . . . . T GC . . . . . . . . . . . . . . . AA . T . AC . . .
blockSeqs : . . . . . . . . GTTTATTA . . . . G . . . . . . . TT . . . . T GT . . . . . . . . . . . . . . . CT . A . T . . .
blockSeqs : . . . . . . . . GTTTTT . . . . G . . . . . . . AT . . . . . AC . . . . . . . . . . . . . . . . . . . A . . .
blockSeqs : . . . . . TTTTCA . . . . T . . . . . . . . . . . . . . . . . . . . . . . . . . . A . . .
blockSeqs : . . . . . . . . . . T . . . . . . . . . . . . . . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . G . . . . . . . .
blockSeqs : . . . . G
blockSeqCons : GTTTGTTTTTCA*************** ***** **** AG***** **** AC
originalCons : CCGACTC--GTG--------T--GTCGATGT-------GCT-----GT----GCTTTTG---T-TTT-G-T-TT---TTTTT----------CATGGCATGG----G-TG--CATTAACTGA-GATCCAAN-GTAA--------CATTAA--------T-GC-TAGA-AA---G----T------GT--TTACAA-A-AAT------------C-TGGACAGTAAT--T-GC-A-TG-G-AATTTT---CCAA---AGA-----ACAACC--ACG-TTT-TC---ATGAAT---GGACG-----A----T-AGT-----GCTCA-----GGGAC----TGTCCT--T-TACTCA-TC-GAGCG-AAAATCAGTAAACATT
finalCons : CCGACTC--GTG--------T--GTCGATGT-------GCT-----GT----GCTTTTG---T-TTTGTTTGTTTTTCA---------------TGGCATGG----G-TG--CATTAACTGA-GATCCAAN-GTAA--------CATTAA--------T-GC-TAGA-AA---G----T------GT--TTACAA-A-AAT------------C-TGGACAGTAAT--T-GC-A-TG-G-AATTTT---CCAA---AGA-----ACAACC--ACG-TTT-TC---ATGAAT---GGACG-----A----T-AGT-----GCTCAG-----GGAC----TGTCCT--T-TACTCA-TC-GAGCG-AAAATCAGTAAACATT
5 sequences could not be aligned to this reference sequence:
Unaligned ( gi|1 ): AATGTTTTACTAATACGAAATTTTATTAATAATCAACGGCTGCAGGTCTAAACAATCAATCTGACAAGTTTTTAAAATATCTTACATGTACACTGTATTTATTCTGCTCTTGTACGTGAAATTTGAACTGGTTTGTGTGTTGTAGATGGTGTATGATTTAGAATATAAAGGCCTTATTGTCTAAATAAAGATATGTTGTACATAAACAATAACCATTGCTGAATATTATTAATTTTAAATCAATTCTTTCAAAGAAAATATTACATGATGATATAATCAACCACTCTTTTTGTTCTGAATTATTAGCAAAAAATGTAAAAAAAAAAAAA
Unaligned ( gi|2 ): AAATGTTTTTCTATAATCAGACTTTATTTCAAATCTATAGCGGCTAGCAGGTCTAAAAATCAACTCTTGACAATTTTTTTAAAAATAACTTTAACATGTACACTGTTTTTATTTCGTGTCTTGTACGTGATTTGACTGGTTTGTGTTTGTAGATGTGTGTATTGTTTGAAATAAAGCCTTATTGTTAATAAAACATAACATGCTGGATGTTTTAAAATCAATCTATTAAAAATATTTACATGATGATATAAGCAACCACTCTTTTCCTGAATTATATAAGCAAAAGTGTAAAAAAAAAAAAG
Unaligned ( gi|3 ): TTTTCTAATCAAGACTTTATTTCAAATCAATTGGCTAGCAGGTCTAAACAATCAACTCTTGACAAGTTTTTATAAATATACTTTAACATGTACACTGTATTTATTCGTGCGTCTGTATGTGATTTGACTGGTTTGTGTTTGTAGGATGTGGTATTGTTTGAGAATAAAGCCTTATTTGTAATAAAACAAATAACCGCATGCATGGAATTTTTAAAATTAATTATTAACGAAGAATATTTACATGAATGAATAAAGCAACCACTCTGTCCTGAATTAATAAGCAAAAATTAAAAAAAAAAA
Unaligned ( gi|4 ): CTGATCAGACTTTATTTAATCTTACGGTAGCAGTCAAAACAATCAACTCTTGTTACAATTTTTAAATTACTTTAAACATGTTACACTGCTTATTTTAGTTCGTGCGGTCTGTAACGTGATTGACTGCGTTTGTGTTTGTAGATGTGTGTAATTGTTTGAATAATCCTTATTGTTAGAAAACAAATTAACCATTGCTGCGATTGGTTTTTGAAAATGTCAATCTAATTAACGAATAATATTTACATGAATGATATAAAGCAACACTCTTTTCCTGAATATATAAGCAA
Unaligned ( gi|20 ): TTGTAATTTATTAATTTTCCAGTGAAAAATAAGAGTTAAATATTTACACTTGGTAAATTTAGGGGGGGGGGGGCGCGAGTGCCCCTCCCTAAATCCGCCACTG
Alignments
lowQualScore : 333333333333333333333333333333333333333 11111111 11111111 1111111111 111111111111 111 1111 1111111
lowQualScore : 55 55 888 3 2 5 8888 33 2 2 555555555555555555555555555555555555555 5555 2 5 33 2 33 00000000 55555555 3 3 666 7777 4444444444 3 3 555555555555 3 00 7777 444 333 3 888 999 77777 0 44 111 2 2 555 77777 2222 0 77777 1111111 0 6666 444 3 55 3 3 3
lowQualScore : .. .. ... . . . .... .. . . ....................................... .... . . .. . .. ........ ........ . . ... .... .......... . . ............ . .. .... ... ... . ... ... ..... . .. ... . . ... ..... .... . ..... ....... . .... ... . .. . . .
lowQualScore : 00 00 666 1 9 7 9999 99 9 9 999999999999999999999999999999999999999 7777 7 3 77 7 77 44444444 44444444 3 6 444 7777 8888888888 6 6 888888888888 1 88 8888 666 222 1 555 666 77777 2 22 555 9 9 000 11111 9999 4 11111 9999999 8 5555 777 1 55 1 1 1
consensus : CCGACTC--GTGT--GT--CGA-TG-T-GCTGT----GCTTTT--GT-T-TTG----------TT-TG---TTTTT-----------C---ATGGCATGG----G-T-G--CATTAACTGA-GATCCAA-NGTAA--------CATTAA--------TGC-TAGA-AA---G----T------GT--TTACAA-A-AAT------------C-TGGACAGTAA-T--TGC-A-T-G-GAATTTT---CCAA---AGA-----ACAACC--ACG---TTT-TCATGAA-T---GGACG-----A----TAGT-----GCTCA-----GGGAC----TGTCCT--T-TACTCA-TC-GAGCG-AAAATCAGTAAACATT
Reference ( family-263 ) : CCGACTC--GTGT--GT--CGA-TG-T-GCTGT----GCTTTT--GT-T-TTG----------TT-TG---TTTTT-----------C---ATGGCATGG----G-T-G--CATTAACTGA-GATCCAA-NGTAA--------CATTAA--------TGC-TAGA-AA---G----T------GT--TTACAA-A-AAT------------C-TGGACAGTAA-T--TGC-A-T-G-GAATTTT---CCAA---AGA-----ACAACC--ACG---TTT-TCATGAA-T---GGACG-----A----TAGT-----GCTCA-----GGGAC----TGTCCT--T-TACTCA-TC-GAGCG-AAAATCAGTAAACATT
gi|10 : C--GTGT--GT--CAA-TG-T-GATGT----GCTTCT--GT-T-TTG----------TT-T-------TT-----------C---GTGGCATGG----G-T-G--TATTTACTGA-GATCCAA-GGTAA--------CATCAA--------TGC-TAAA-AA---G----T------AT--TTACTA-A-TAC------------C-TAGACAGT-T-T--TGC-A-T-G-GAATTTT---CCAA---AGAAGTTTAGAACA--ACA---TTT-TCATGAA-T---GGACG-----ATAAGTAAT-----GCT-------GGTACTGCATGTCCT--G-T--TGA-TC-GAGCA-AAAATCAGTAAATAT
gi|11 : CCGACTC--GTGC--GT---------T-GTTAT----GAT-----AT-T-TTGA---------TT-TG---TTTTT-----------C---ATGG---------G-T-G--CACTAACTAA-GATGCAA-GGTAA--------TATTAA--------TGC-TAAA-AATTTT----T------TT--TTACAA-A-AAT------------A-TAGGTAG-------TGT-A-T-T-GAATTTT---CCA------A-----ACAA------GT--TTT-TCATGAA-T---GGACA-----A----TAAT-----
gi|12 : ctc--GTGT--GT----G-TG-T-GTTGTTTTTGCTTTT--GTAT-TTG----------TT-TT---TTTTT-----------T-------CATGG--------------TAAAAGA-AATCAAA-C-TAC--------TGTTAA--------TGC-TCAA-AA---G----T------AT--TTACAA-ATAATTGATGACAATAAC-TGGATAGTAA-T--TGC-A-C-G-ACATTTT---CCAG---AAA-----GAAGTC--AGA---TTT-TC----A-T---GGACG-----A----TAAT-----GCTC----------C----TGT--------------TC-AAGCG-ATAATTACTAAATATTaaatataatgatcctgcatgacttggtgatgatcgaacaaaaatgactaaatattg
gi|13 : tCCGACTC--GTGT--GT--AGA-TG-T-GCTG--------------------------------------------------------------GCATGG----G-T-G--CATTGACTGA-GATCCAA-TGTAA--------CATTAAATCATTAATCT-TAGA-AA---G----TACCTTTGTACTTACAA-A-AAG------------C-TGGACAGTAA-T--T---------------T---C--A---AGG-----ACAACC--AAA---TGT-TCATGAT-T---AGACG-----A----TATT-----GCTCA-----GGGAC----TGTCCT--T-TACTCA-TC-GAGAG-AAAATCAGTAAACATTa
gi|14 : ctCCGACTC--GTGT--GT--AGA-TG-T-GCTG--------------------------------------------------------------GCATGG----G-T-G--CATTGACTGA-GATCCAA-TGTAACATTAAATCATTAA--------TCT-TAGA-AA---GTACCT------GTACTTACAA-A-AAG------------C-TGGACAGTAA------------------TTT---C--A---AGG-----ACAACC--AAA---TGT-TCATGAT-T---AGACG-----A----TATT-----GC-CA-----GGGAC----TGTCC---T-TACTCA-TC-GAGAGAAAAATCAGTAAACATT
gi|15 : GA-TG-T-TCTGT----GCTTTT--GT-T-TTA----------TT-T----TGTTT-----------C---ATGGCATGG----G-T-G--CAGTAACTGA-GATCCAA-TGTAC--------CATTAA--------TGC-TA
gi|15 : ggggggctgccccctctaaatccgccactgT-TCATGAA-TTACAGACG-----A----TAGT-----GCTCA-----GGGAC----TGTCCT--T-TACTCA-TC-GAGAG-AAAATCAGTAAACATTttgttcatgaattacagacgatagtgctcagggactgtcctttactcatcgagagaaaatcagtaaacatt
gi|16 : ggggggctgccccctctaaatccgccactggatgttctgtgcttttgttttattttgtttcatggcatgggtgcagtaactgagatccaatgtaccattaatgctattgACAACA-AAT------------C-TGGACAATAA-T--TTC-A-T-G-GAATTTTCCCCCAA---AGA-----AC-ACC--ACA---TTT-TCATGAA-T---AGACG-----ATC--TAGT-----ACTCATGCAGAGGAC----TGGTAT--T-T-TTCA-TC-GAGCG-AAA
gi|17 : aT------------C-TGGATAAAAA-A--TTT-A-T-G-GAATTTT---CCAA---AGA-----ACAACTGTACA---TTT-TTATGAA-T---GGACG-----A----TAGT-----GATCA-----GGGAC----TGTCCT--T-TGCTCA-TC-GTGCG-AAAAACAGTAAACATT
gi|18 : AT------------C-TGGACAGTCA-TACTGT-AAC-GAGAGTTTTG--TCAG---AGA-----CTCACA--GGG---TTTATCATG--------GACG-----A----TAAT-----GC---------------------CT--TGTATCCA-TCTGAGCG-AAAATTAGTGAATATT
gi|19 : tggatCGACTT--GTG---GTTCCGACTG-TCGATGT----GCTTTT--AT-T-TTG----------GT-TT---TTTTT-----------CCCCATGGTATGG----G-TTG--CATTACCTGA-GATCCAA-TGTAA--------CATTAA--------TGA-TAGA-AA---G----T------GT--
gi|21 : GA-TA-T-GCTGT----GCTGTG--GT-T-TTG----------TT-TA---TT------------------ATGGCATGG----G-T-G--CATTTACTGA-GATCCAA-AGT
gi|22 : ccctcccccgact-T-GATGT----GCTTTT--GT-T-TTGA---------TT-TG---TTTTT-----------C---ATGGCATGG----G-T-G--CATTAACTGA-GATCCAA-GGTAA--------Ct
gi|23 : cccccgacACGG----G-T-G--CATAAACTGA-GATCCAA-GGTAA--------CA
gi|5 : acccccgactcttgtgtgcctgttccgcgCCGACGT--GTGTTGGT--CGA-TGTT-GCGGTG---GCTTTTTGGT-TATTGCTCTTGGTTTTT-TGTTCTTTTC-----------C---CTGGCATGG----GATGG--CATTAACTGA-GATCCAATTGTAA--------CATTAAT-------TGC-TAGACAA---G----T------GT--TTAC-A-A-AAT------------C-TGGACAGTAATT--TGC-A-TGG-GAATTTT---CCAATTTAGA-----ACAACC--ACGTTTTTT-TTATCAATT---AGACG-----AT---TAGT-----GCTCA-----GGGAC----TGTCCT--T-TACTCATTT-GAGCG-AAAATCAGTAAACACTat
gi|6 : ccCCGACTT--GTGT--GT--CGA-TG-T-GCTGT----GCTTTT--GT-T-TTG----------CT-TG---TTTTTTGTTCTTTTCCC---ATGGCATGG----G-T-G--CATTAACTGA-GATCCAA-TGTAA--------CATTAT--------TGC-TAGA-AA---G----T------GT--TTACAA-A-AAT------------C-TGGACAGTAA-T--TGC-A-T-G-GAATTTT---CCAATT-AGA-----ACAACC--ACG---TTT-TTATCAA-T---AGACG-----A----TAGT-----GCTCA-----GGGAC----TGTCCT--T-TACTCA-TC-GAGCG-AAAATCAGTAAACACT
gi|7 : CCGACTT--GTGT--GT--CGA-AG-TCGATGT----GCTTTT--GT-T-TT--------------------TTTT-----------C---ATGGTATGG----G-T-GTGCATTAACTGAAGATCTAA-TGTAA--------CATTAT--------TGC-TAGA-AA---G----T------TG--TTACAA-A-AAT------------CCTTGACCGTAA-T--TTCCA-T-G-GAATTAT---CCGA---G---------AACC--ACA---TTT-TCATGAA-T---ATGCG-----A----TAGTACTCTGCTCA-----AGAAC----TGTCCA--T-TACTCA-TC-GTTCG-AAAATCAGTAAACATT
gi|8 : ccctccCCGACTC--GTGT--GT--CGA-TG-T-GCTGT----GCTTTT--GT-T-TTG----------ATATG---TTTTT-----------C---ATGGCATGG----G-T-G--CACTAACTGA-GATCCAA-GGTAA--------CATTAA--------TGCTTAAA-AA---G----T------TT--TTACAA-A-ACT------------C-TAGACAG-------TGT-A-T-G-GGATTTT---CCAA---AG--------------ACGT--TTT-TCATGAA-T---GGGCGATAATA----TAAT-----GTTCC-----TGCA-----TGTCCTGAT-TA-TGA-TC-GAGCA-AAAATCACTAAATATT
gi|9 : cccCCGACTAAAGTGT--GC--CGA-TG-T-GCTGT----GCTTTT--GT-T-T-G----------TT-TGGG-TTTTT-----------T---ATGGTATGGACGGG-T-A--CATTAACTGA-GATATAA-GGTAA--------CATTAA--------TGC-TAGA-AA---G----T------AT--CAACAA-A-AAT------------C-TGGACAGTAA-T--GAC-A-T-G-GAATTTT---CCAG---AGA-----ATAACC--ACA---TTT-TCATGAA-T---GGACG-----A----TAAT-----GCTT----------C----TG---------A--CA-TC-GAGCG-AAAATCAGTAAATATT
5 sequences could not be aligned to this reference sequence:
Unaligned ( gi|1 ): AATGTTTTACTAATACGAAATTTTATTAATAATCAACGGCTGCAGGTCTAAACAATCAATCTGACAAGTTTTTAAAATATCTTACATGTACACTGTATTTATTCTGCTCTTGTACGTGAAATTTGAACTGGTTTGTGTGTTGTAGATGGTGTATGATTTAGAATATAAAGGCCTTATTGTCTAAATAAAGATATGTTGTACATAAACAATAACCATTGCTGAATATTATTAATTTTAAATCAATTCTTTCAAAGAAAATATTACATGATGATATAATCAACCACTCTTTTTGTTCTGAATTATTAGCAAAAAATGTAAAAAAAAAAAAA
Unaligned ( gi|2 ): AAATGTTTTTCTATAATCAGACTTTATTTCAAATCTATAGCGGCTAGCAGGTCTAAAAATCAACTCTTGACAATTTTTTTAAAAATAACTTTAACATGTACACTGTTTTTATTTCGTGTCTTGTACGTGATTTGACTGGTTTGTGTTTGTAGATGTGTGTATTGTTTGAAATAAAGCCTTATTGTTAATAAAACATAACATGCTGGATGTTTTAAAATCAATCTATTAAAAATATTTACATGATGATATAAGCAACCACTCTTTTCCTGAATTATATAAGCAAAAGTGTAAAAAAAAAAAAG
Unaligned ( gi|3 ): TTTTCTAATCAAGACTTTATTTCAAATCAATTGGCTAGCAGGTCTAAACAATCAACTCTTGACAAGTTTTTATAAATATACTTTAACATGTACACTGTATTTATTCGTGCGTCTGTATGTGATTTGACTGGTTTGTGTTTGTAGGATGTGGTATTGTTTGAGAATAAAGCCTTATTTGTAATAAAACAAATAACCGCATGCATGGAATTTTTAAAATTAATTATTAACGAAGAATATTTACATGAATGAATAAAGCAACCACTCTGTCCTGAATTAATAAGCAAAAATTAAAAAAAAAAA
Unaligned ( gi|4 ): CTGATCAGACTTTATTTAATCTTACGGTAGCAGTCAAAACAATCAACTCTTGTTACAATTTTTAAATTACTTTAAACATGTTACACTGCTTATTTTAGTTCGTGCGGTCTGTAACGTGATTGACTGCGTTTGTGTTTGTAGATGTGTGTAATTGTTTGAATAATCCTTATTGTTAGAAAACAAATTAACCATTGCTGCGATTGGTTTTTGAAAATGTCAATCTAATTAACGAATAATATTTACATGAATGATATAAAGCAACACTCTTTTCCTGAATATATAAGCAA
Unaligned ( gi|20 ): TTGTAATTTATTAATTTTCCAGTGAAAAATAAGAGTTAAATATTTACACTTGGTAAATTTAGGGGGGGGGGGGCGCGAGTGCCCCTCCCTAAATCCGCCACTG