lowQualScore : 1111111111111111111111111111111111111111111111111 77777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777 111111111111111
lowQualScore : 333 3333 2222222222222222222222222222222222222222222222222 1 1 1 1111111 4444444 1 1 1 444444 1 33333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333 33 222222 22 2 444444444444444444444444444444444444444444444444444444444444444444444444444444444444444 1 11 1111111 3333333333333333 2222 2222222 11 11 111 11 3333333 1111 1 22 22 111 1 444444444444444444444444444 111111 33333 88888888 1 11 22222 1 111111111111111 222222 22 11 11 11 11 4 1 1
lowQualScore : 888 1111 5555555555555555555555555555555555555555555555555 4 7 5 1 6 6 4 6666666 1 4444444 2 6 0 4 1 5 1 0 555555 1 5 1 33333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333 4 2 8 00 8 6 444444 5 22 0 8 666666666666666666666666666666666666666666666666666666666666666666666666666666666666666 0 0 8888 1 55 4444444 66 5 8888888888888888 5 4444 5 7777777 33 6 11 333 3 77 4 2222222 6 6 9 3333 8 88 4 0 66 111 5 8 88 444444444444444444444444444 000000 3 55 44444 1 1 11111111 1 1 0 3 4 00 22222 1 0 1 333333333333333 8 6 999 555555 8 11 777 3 33 66 6 999 8 2 3 99 66 6 0 7 7
lowQualScore : ... .... ................................................. . . . . . . . ....... . ....... . . . . . . . . ...... . . . .............................................................................................................................................................................................................................................................................................................................................................................................................. . . . .. . . ...... . .. . . ....................................................................................... . . .... . .. ....... .. . ................ . .... . ....... .. . .. ... . .. . ....... . . . .... . .. . . .. ... . . .. ........................... ...... . .. ..... . . ........ . . . . . .. ..... . . . ............... . . ... ...... . .. ... . .. .. . ... . . . .. .. . . . .
lowQualScore : 000 0000 8888888888888888888888888888888888888888888888888 8 7 0 3 0 7 8 7777777 7 5555555 2 7 8 4 4 7 4 6 000000 9 7 5 22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222 2 5 2 00 0 8 888888 2 00 4 2 999999999999999999999999999999999999999999999999999999999999999999999999999999999999999 8 0 1111 8 66 2222222 99 6 5555555555555555 7 9999 7 3333333 77 0 00 555 3 00 8 8888888 3 5 3 8888 2 00 0 7 77 777 0 3 88 333333333333333333333333333 888888 7 22 66666 8 4 66666666 8 8 0 0 6 66 66666 4 0 4 222222222222222 0 6 888 000000 0 88 000 6 88 44 8 666 2 5 0 00 55 0 0 0 0
consensus : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCAAGAATACTACTTGAAATATTTGAATATTGTGCAAATAACCAAAGAT----ATA-C-TTTTA-ATTNTT---CGATTTTGAAAAAGCTTTTGATTCTGTCGAATG-GAATTTCNT----GTTTAA--AG-CNTTAA-AAAAATTCAATTT-TGG-TGAAAATTTTAT-AAAATGGATTAAAAT-ACTATATA-TAA-C--AA-CT--TTC----TT----TAAA--CTAAA----A------AA-------TG------G------ATC-T-CTAA------AA--CACG----TAAAATGACCTCGCGT-----GG--AATT-A-GACAAGGCTGTCCTAT-CT-CCGCNACGATTTACNTNTATTTGTTTTCGTGTTAGAAGTACTGGCAGTTNNACTGCGTCGAAATAATGACGAAATACTCGGTCTNTCGCCATGGTGATGATACTA---ATGT--AAGAA-T-AAAANCGTN-CAACACGCT--GACGATT-T-AACATTA-CTGT--TAAAAGATA-TAATGTCTNTGAAAA--AGCGAT---TGNCNTNAATGAAANCAATAAATTTTGT-----GAACATGCAAGNTCTAAAACTT-AATCAT--AANAAAACCGGAAATGTATNCTTCTTGGAN-----GTTTAA---AAGATA-GTNTC-----GAAGA-A---ATTN-G--TGGTA-TA-AA----A---GT---AACTAAT--AAAG-CG-GTTAAATGCCTAGGNGTATATTTA--G--GNCATGA-T---AC-AGANGANTGT-TATAN-TAAAAATTGGATG-AAAAN----T-TATAACGAN-ATGGAAAAAA-TTTTTGA-GTCGTGGAAAAAGAGAAAA--TTNACTNTATTCGGAAAA---NCTTGTAT-ATAAAC-CNCTTGCTATTT---CAAAATTAAT-NT---ATGCATCCTCAATTTTA----C--TA--TT--CCNGATGAAAATTTNCATAAAAAGTATAAA-CGAACTTATTTTCAACTTTATTTGGAACAAAANTGATTA--GAATTAAAAGGAATACTTTGATTGGNNC-C--AATA--NCAG-AAGGTGGTAT-TGAGCGGTTT-GTCCGACGTGTNTTCAAAANTN-AAAGCTATTGAANCNTCATGGGTANAANGAATCNGTAGTNAAAGGGTTATTAATAGATTTTG
Reference ( gi|1 ) : CATATATAAAGGGTAGGATTATTGGTGAAAATGCAAGATGGCTACTTGATGTTTTTGA------TACAAATAAT-GAGGGT----ATA-C-TTTTA-AT-GTT---AGATTTTGAAAAGGCGTTTGATGCTGTAGAGTG-GAACTTTGT----GTTTAA--GG-TGTTGA-AAAATTTTAAATT-TGG-TGAAAATTTTAT-AACATGGATTAAAAT-ATTATACACTAA-C--A--CT--TTC----TT----TAAA--TTAAA----G------AA-------CG------G------ATT-T-C--A------GT--CATG----TAGAATG----TATGT-----GG--AA-T-A-GACAGGGATGTCCTCT-TT-CCGCTAT----T--TTATATTTATTT--GTGT--GAGATACTAGC--TTTGAGTATA---AAACAA-GAC-AAATA--CAAT-TA-----A-GGT-ATTATACCAAATATGTTCAAGAAATAAAAAACATT-CAGCACGCT--GATGATC-T-AACATTAACTGT--TAAAAGATA-TAAC-TTTATGAAGACAAGCGAT--TTGGCGTTACT---AGCAA-AAGTTTTGTTCAGCGAAT--GCAGGGTCCAAA--TT-AATTAT--ACTAAAACTG--AATGTATCCTTCTTCGAC-----GTCTAA---AGAATA-GTGTC-----AAAGA-A---ATTA-G--TGGCG-TA-AA----A---AC---GACTAAT--AAAG-CA-GTAAAATGTTTAGGAATATACTTC--G--GTCATGA-T---AC-AATTGATTGT-TACGA-TAAAAATTGGATG-AAAAC----T-TATCATGAC-ATGGAAAAAA-TGTTCGA-GTCATGGAAGAAGAGGCGA--CTGACTTTATTTGGCAAA---ACTTGTATTATAAATTCTCCTGCGATTT---CAAACTTTAT-TT---ATGTTGCCTCAATTTTA----CC-TA--TT--CCTGATGAAAATCTTT-TGAAAAATATAAAACGTACT-ATTTTTAATTTTCTTTGGAATAAGACTGA-CA--GGATTAAAAGGAATACTTTGATTGG----C--AATGTTTCAG-AGGGAGGTAT-TG-GTG--TT-GT-AGATATATATTTAAAAATT-AAAGCTATTAAAGCCTCCTGGATACAAAGAATCAGTAACAAAGGGGTTA-TAAAAGTTTTTGT
gi|3 : CAAGAATACTACTTGAAATATTTGAATATTGTGCAATTAAT-CAGGATTTTGATGGCATTTTA-CT-TTTCCTAGATTTTGAAAATGCTTTTGATTCTGTTGAATA-TGATTTCAT----GTACAA--AACTCTAGA-AAAAATTCGATTT-TGG-TGAAAATTTTATCAAAATGA--TAAAATCACTATATTCCAAGCCAA--TT--TTCAA--TT----CAAGTTTTAAA----AAATCACAA-------CG------GTTGGGTGTC-T-A--A------AT--CATGTGCATGAAATG----CAGATCAAGAGG--CATT-A-GACAAAGATGTCCTGTGTTATCACTAC----TACATGTATTTATTTTCATGTTAGAAATACTAGCAGTTCCACTGAA---AAATAATGACGAAATACTCGGTCTATCGCCA-GGTGATGATACTA---ATG---AAAAATTAAAAATCGTG-CAACATGCA--GATGATTGTAAATATT---TGT--TAAAAGATAGTAAT-TCGTTGAAAAAAAACAATAGGTGG-ATT--T---AGTAA-------TGT--------C--GCAGGCCCGAAA--TTGAATTTG--GATAAAACAG--AATG----CTTATT-GACAGGAAGTCTTATTGAG-AT--GTATCTAAATGAAGA-ATATATTT-G--TGGTGTTA-AA----A---TT---GA-TACA--AAAA-TACGTAAAATCAATAGGTGCATATTTA--G--GACATGA-T---A
gi|11 : tcatatgaataaaggttctacatAATAACCAAAGAT----A-A-C-TTTTA-ATTATC---CAATTTTGAGAAAGCTTTTGATTCTGTCGAAGG-AAATTTCCT----CTTTAAACAG-CTTTAA-GAAAATTCAATTT-TGGATAAGAATTTTA--A--ATGGATC-AAAT-ATTCTATAATAT-C--C--CTAATTT----TTCGCATAAA----AAAATATG------GA-------TG------G------ATC-T-CTAA------AA--CACT----TAAAATGACCTCGCGT-----GG--AATT-A-GACAAGGCTGTCCTAT-CT-Caggatattagctatgaaatgaactggacaa
gi|10 : attaaaggcgatacatcggagaaaaatgctcgtttgatacctagacatatttgaatattgtgagaaacAATAACCAAAGAT----A-A-C-TTTTA-ATTATC---CAATTTTGAGAAAGCTTTTGATTCTGTCGAAGG-AAATTTCCT----CTTTAAACAG-CTTTAA-GAAAATTCAATTT-TGGATAAGAATTTTA--A--ATGGATC-AAAT-ATTCTATAATAT-C--C--CTAATTT----TTCGCATAAA----AAAATATG------GA-------TG------G------ATC-T-CTAA------AA--CACT----TAAAATGACCTCGCGT-----GG--AATT-A-GACAAGGCTGTCCTAT-CT-Cgcg
gi|4 : attaaaggcgatacatcggagaaaaatgctcgtttgatacctagacatatttgaatattgtgagaaacTA-C-TTTTA-----CT---CGATTTTCAAAGAGCATTTGATTCCGTCGAATG-GTCTTTTAT----GAT-AA--AG-CACTCA-AGTTCTTTAGGTT-TGG-ACAAAAATTCAC-CA-ATGGATTCAAAT-TTTGTAT--TAA-A--AG-C-----CAGAATT----TAGA--CTAAA----A------AA-------TAATAATTG------ACTGT-C--A------AAAACATG----TAAAGTG-----AGGC-----GGGGAA-TTC-GTCAAGGATGTTCGAT-AT-CAGCGATGATTT--TTCTATTTGTT---GT-T--GAAGTATTGGCAATTAGATTACGTCGAAAT---GAC-A------CAAT-TC-----ATGGT-A-------------GT----------AAAAACATTACAACATGCT--GACGATT-C-TACATTACCT-T--TGAGGGACA-TTACGTCTGT-AAAATCAGCGAT--Tgcg
gi|2 : aatat-TTTTACAT-TTTTG-GGATTTTCAAAAAGCTTTTGATTCAGTCAAATG-GAACTTTAT----GTTTGA--AA-CCTTAA-AGCGATTTAACTT-TGG-AGAAAACTTTTT-GCAATGGATTCCAAT-ACTATATA--AA-C--AACCA--ATT----TT----TAAG--CTAAA----A------AATAATGGGTG------G------ATT-TCC--AAAACGTGT--CACA----TGGAAAG----AA---------G--CA-T-ACGGCAGGGCTGCCCaatgaaatcaatactttcagcaaatactctggtatgaaattaaacctttcaaaaacagagcgcattttattaggaccattaaaaggccaacagatacagacggcattactgtatatgacgcgtgcgtaaaggtaataggtattcggcatgataaagatttatgttttaaaaataattggaccaaaaagattgatgatatagaaaagctgttttaatcgtgtaaaaaataaagttaa
gi|13 : gaattacgacggaGACTTTGAAAAGTT-CTTGA--CTGTAGAATGAGAGGTTTTTTTAAATTTAA--AA-CACTGACAAAATTT--AATTATAG-TGAAAAATTT----AGATGGATTAAAAT-gatatcttcgatgatattcctcttcgttgcagaaatcctatcaatcaaaataatgtctaaccgtgagattctgtgatttaaaacgtcaaagatgtccacagacataaacttgatacagcacgccgatgttgctacgctcgcactacgcgacgaaaaagcattacaactagcaatcacctgcataaagaacttcggaaacatttctggattaattttaaatgtaaaccaaacagaatgcttgttattaggctctctgaaagattcagtccgtgttttacacggcataaaggttaaccgagactgcattaaagtcttgggaatttatatagatcatgatatagagaaatgtatagaaaaaaaatggggaaacaaaattaaagaactcgagagactctttgaatcatggaaaaaaagaaaattaagtattttcggaaaaacgtgtatcataaacaattttgctatattaaaattaatatacaatcttacactcctaccttaccctagtgctgatattatcaaaaacataaatagattgattttcaatttcatttggaacaaaagggatagaataaagtgaaaaactttaaaaggggccactaagcagggtggcatatgggttatagacgtagagtcaaaagcaaaagcaataaaatgttcctggata
gi|16 : gatattggatttagtgtaagaatcatccttgatttaattgtgaaattcaaatgaccctcatatcttgttattctgtTTTAATTT-TGG-TGATAATTTTAT-AAAGTGGATAAATAT-ACTATATA--AA-G--AATCT--ATC----TT----TAGA--TTAAA----A------AA-------
gi|8 : GAAATTAAAAGTGTA-CA--ACGCTCAGACGATT-T-A---TCAGCTGCGGTAAAAGATG-AAATATCTATGAAAA------AT----GCCCTAAATGAAATCAATAAATTTTGT-----GAATATGCTCGTTCTAAAA-TT-AAT-ATCGAC-AAAACCG--AATGTATTTTGCTTGGAA-----GGTTGC---AAAATAAGT-TT-----GAAGA-A---CTTT-T--TAGTA-TT-AC----A---GT---AACAAAT--AGAG-CG-ACTAAATGTCTAGG--TATCTTTCTAG--GTCATGA-T---AA-AGAAGAATGT-TATAT-CAAAAATTGGATG-AAAAT----A-TACAACGAA-ATGGAAAAAT-TGTTTGA-ATCCTGGAAAAGAAGAAAA--TTAACACTTTTTGGTAAA---GCATGCATAATAA---CACTTGCCATTT---CAAAATAAGT-AT---ATGTATCTTCAATATTG----TG-TT--TT--CCTGATAAAGAtaatgggtggatgtcaaaaacaagtaaacatagaa
gi|6 : AAGGTTTAAAACTT-AATCAT--AAGTAAACCGGAAATA-ATACTTCTGGGAT-----CTTTAA---AAGGAA-GTTTT-----TGATATA---ATTA-GAAGGGAA-TA-AA----A---GT---AA--AATGAAAAGACA-GTTAAATGCCTGGGTGTAT-TTTA--G--GACATGAATGAAAC-AA--GGT-GT-TATAACTCAGAATTGGATG-AAAGG----TATATAATAAT-ATGGGAAAAACTTTTTGATGTCGTGGAAAAAGAGAAAAGCTTTACTATATTTGAAAAA---TGTTGTAT-ATAAA--CACCTGCT-TTT---CAAAATTAAT-TTTACATGCATCCT--ACTTAA-------TA--TG--CCAAATGAAAAGTTACATAAAAAGTATTAA-CAAACTTATTTTTAACTTTATTTGGAACAAAACTGATTA--GAATTAAAA-GAATACATTGATTGGTTC-T--AATA--ACAA-AATGTGGTAT-TGAGTGGTTT-GTCCGATGTGTTTTCAAAACTG-AAAGCT-TTGAAACATCATGGGT
gi|5 : AAGGTTTAAAACTT-AATCAT--AAGTAAACCGGAAATA-ATACTTCTGGGAT-----CTTTAA---AAGGAA-GTTTT-----TGATATA---ATTA-GAAGGGAA-TA-AA----A---GT---AA--AATGAAAAGACA-GTTAAATGCCTGGGTGTAT-TTTA--G--GACATGAATGAAAC-AA--GGT-GT-TATAACTCAGAATTGGATG-AAAGG----TATATAATAAT-ATGGGAAAAACTTTTTGATGTCGTGGAAAAAGAGAAAAGCTTTACTATATTTGAAAAA---TGTTGTAT-ATAAA--CACCTGCT-TTT---CAAAATTAAT-TTTACATGCATCCT--ACTTAA-------TA--TG--CCAAATGAAAAGTTACATAAAAAGTATTAA-CAAACTTATTTTTAACTTTATTTGGAACAAAACTGATTA--GAATTAAAA-GAATACATTGATTGGTTC-T--AATA--ACAA-AATGTGGTAT-TGAGTGGTTT-GTCCGATGTGTTTTCAAAACTG-AAAGCT-TTGAAACATCATGGGT
gi|7 : AAA--TT-AATTAT--GCTAAAACTG--AATGTATCCTTCTTGGAA-----GTTTAA---AGAATA-GTGTC-----AAAGA-A---ATTC-G--TGGCA-TA-AA----A---AC---GACTGGT--AAAG-CA-ATAAAATGTTTAGGAATATACTTC--G--GTCATGA-T---AC-AATTGATTGT-TACCA-TAAAAATTGGATG-AAAAC----T-TATCATGAC-ATGGAAAAAA-TGTTTGA-GACATGAAAGAAAAGGCAA--CTAACTTTATTTGGCATA---ACTTGTATTATAAATTCTCTTGCGTTTT---CTAAATTTAT-TT---ATGTTGCCTCAATTTTA----CC-TA--TT--CCTGATGAAAATCTTT-TGAAAAATATAAAAC----------------------GGAATAAGAATGA-CA--GGATTAAAAGGAATACTTTGATTGG----CTAAATGTTT-AG-AGGGATGTA---G-GTG--TTGGT-AGATATATATTTAAAAATT-AAAGCTATT-AAGCCTCTTGGATACAAAGAATTA-TAGTCAAAGGGTTATTAATAGATTTTG
gi|14 : AAGA-A---CTTT-T--TGGTA-TT-GA----A---GT---AACAAAT--AGAG-CG-ACTAAATGTCTATG--TATCTTTC--TACGCCATGA-T---AA-AGAAGAATGT-TATAT-CAAAAATTGGATG-AAAAT----A-TACAACGAA-ATGGAAA
gi|9 : agtttg-A---ATTATA--TGGTA-TACAA----ATTTAT---AACTAAT--GCAC-CG-ATTAAATGTTTAGGAATATATATA--G--GGCATGC-T---ATTAACCAAT-GC-TACAT-TAAAGATTGGACGGAAAAA----T-GATAA--ACTAGAGAGAAAA-CTTACAA---TATGGAACACGAGAAAA--TTGACTTTATACGGAAAATGCACT-GTA--ATGAACACTTTGGC-ATTGACACAA---TTATACT---ATAGTGCATATATTTTG----TAATA--TC--CCGGA--AAAATTTC----------ATAAA-----CA-GTTTTCAATTTTCTTTGGGGCAACA--GA-AAACGGATAAAAAGAAATACTTTGATTGGAAAAC--AAGA----AG-AAGGAGGGAT-AG-GCA--TT-GT-TGACAT-TGTTTGTAAATTAAAAGCGCTTAAATCGGCATGGGTAAAACGAATCTGTAATGAAt
gi|2 : GGCA-TA-AAGGTTA---ACCGAGACT--------G-CA-TTAAAGT-CTTGGGAATTTATATA--G--ATCATGA-T---AT-AGAGAAATGTATA-GA-AAAAAAATGG--G-GAAACAAAAT-TA--AAGAA-CTCGAGAGAC-TCTTTGA-ATCATGGAAAAAAAGAAAA--TTAAGTATTTTCGGAAAA---ACGTGTATCATAAACAATTTTGCTATAT---TAAAATTAAT-AT---A--------CAATCTTACACTCC-TACCTTACCCTAGTGCTGATATTA-TCAAAAACATAAATAG-ATTGATTTTCAATTTCATTTGGAACAAAAGGGA-TA--GAATAAAGTGAAAAACTTTAAAAGGGGC-C--A----CTAAGCAGGGTGGCATATG-G-G--TT-AT-AGACGTAGAGTCAAAAGCA-AAAGCAATAAAATGTTCCTGGATA
2 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|12 ): AGAAAGCTTAATGCTAATAAAATAATGTGTAATCGTGAGATTCTGGGATTTAAAACGTCAAAGATGTTCGCAGACATAACATTGATACAACATGCTGACGATACTACGCTCGCATTACACGACCAAAAAGCATTACAATTAGCAATCACTTGTATAAAGATCTGAATTAATTCTAACTGTTAACAAATACATACTGTGTTA
Unaligned ( gi|15 ): CCCTATATTCCGCATAAAAAATAATGGATGGATATCCAAAACATGTTCAATGAAAAGAGGAATTAGATAAGGCTGTCCAATTTCAGCGATAATTTTTCTTTTCGTTGTAGAAATAATGTCA
Alignments
lowQualScore : 111111111111111111111111111111111111111111111111
lowQualScore : 11 1111 44444 1 22222222 111 11 1 22222 1 888888888888888888888888888888888888888888888888888888888888888888888888 11111 33333 222222222 555555555555 111 1 555555555555 1 444444444444444444444444444444444444444444444444 11111 111 1111 11 1 1 9999999999999999999999 222222 333333333333 11 33 1 11111 1111 1111111 11111 11111 1111111 11 11111 1 11 111 11 11 11 222 222 11 3333333333333333333333333333333333 111 22222222222 111 22 3333333333333 33333333333333333 1 1
lowQualScore : 66 1 9999 6 66 5 00000 5 8 1 77777777 5 77 44 888888 3 0 000 1 77 55 1 5 0 44444 0 77 000000000000000000000000000000000000000000000000000000000000000000000000 5 6 7 11111 2 44444 1 1 222222222 0 77 1 77 3 666666666666 3 444 0 0 55 55 888888888888 3 0 3 2 666666666666666666666666666666666666666666666666 33333 1 4 444 7777 33 0 9 1 4444444444444444444444 1 3 333333 4 333333333333 33 1 8 4 9999 1 33 4 3 33333 11 77 2222 0 5 1 8888888 00000 77777 0 4 4 777 4 5555555 1 8 00 1 11 1 00000 5 666 1 8 5 0 1 22 4 55 000 55 4 4 999 4 4 1 00 4 22 1 2 33 1 1 1 1 99999 000 999 1 00 5 5 5 1 5555555555555555555555555555555555 1 3 666 1 33333333333 2 2 3 111 44 22 6 0000000000000 4 22222222222222222 0 6 1 6 1 1 1 6 1 1 3 1 1 77 0 1 5 4 4
lowQualScore : .. . .... . .. . ..... . . . ........ . .. .. ...... . . ... . .. .. . . . ..... . .. ........................................................................ . . . ..... . ..... . . ......... . .. . .. . ............ . ... . . .. .. ............ . . . . ................................................ ..... . . ... .... .. . . . ...................... . . ...... . ............ .. . . . .... . .. . . ..... .. .. .... . . . ....... ..... ..... . . . ... . ....... . . .. . .. . ..... . ... . . . . . .. . .. ... .. . . ... . . . .. . .. . . .. . . . . ..... ... ... . .. . . . . .................................. . . ... . ........... . . . ... .. .. . ............. . ................. . . . . . . . . . . . . . .. . . . . .
lowQualScore : 00 4 8888 0 44 0 00000 8 6 8 55555555 7 11 44 444444 9 4 000 0 99 77 0 7 0 55555 0 11 222222222222222222222222222222222222222222222222222222222222222222222222 0 5 4 88888 2 77777 9 4 999999999 7 99 7 99 8 666666666666 2 888 4 8 44 00 222222222222 2 8 2 0 888888888888888888888888888888888888888888888888 00000 0 0 888 2222 88 0 0 0 8888888888888888888888 0 2 222222 0 555555555555 55 0 9 0 1111 7 99 1 0 77777 77 99 1111 6 0 0 1111111 33333 88888 7 0 0 000 0 5555555 2 0 44 2 99 0 00000 8 222 0 0 7 5 0 99 0 55 666 55 4 4 333 4 4 0 22 9 22 1 2 88 0 0 4 6 99999 999 666 0 99 7 7 7 0 0000000000000000000000000000000000 0 0 777 7 88888888888 2 2 0 777 22 22 7 7777777777777 0 55555555555555555 7 3 0 7 0 0 3 3 0 0 3 0 0 77 7 0 5 0 0
consensus : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCAAGAATACTACTTGA---NATATTTGAATATTGTGAGAAACAAATAACCGAGGAT----AT-AC-TTTTA-ATTNTCC--G-ATTTTGAAAAAGCTTTTGATTCTGTCGAATGGAA---TTTCNTG--TTTAAA--GCNCTA-AAAAAATTTAATTTTGG-TGAAAATTTTAT-AAAATGGATTAAA-AT-NCTATA-TA-TAA--CAA-CT--TTC----TT---TAAA--TTAAAA----AA----------T-------G------GA-TNTCNAAAACA----CGTAAAATG-A--TCGCGTGGAATTAGA---------CAAGGCTGTCC--TATCT--CCGCNATGATTTA-AT-TATTTNTTTTCGTGNTAGAAATACTAGCAATTCGACTGCGTCAAAATAATGACGAAATAC--GGTC-----CCA-GGT-AT-ATACCAA---TG---AAGAA-T--AAAAA-CG-TACAACACGCNGACGATT-T-AACATTA-CTGT--TAAAAGATA-TAACGTCTATGAAA-A--AGCGATT-G-C-T-AATGAAANCAATA----AATTTNGT-----GAATAT-GCANGGTCTAAAACTTAATCAT-GANAAAACCG--AATGTATNCTTCTT----GGANGTTTAA--AAG----ATAG-TNTC-----GAAGA-A---ATTN-G--TGGTA-TA-AAA---GT-AACTAAT--AAAG-CG-GTTAAATGCCTAGGNGTA-----TATTT--AGGNCATGA-TANAGACGAA-TGT-TA--TAA-NAAA--AATTGGAC-GA-AAANT-TAT-AACGANATGGAAAAAA-TNTTTGA-GTCGTGGAAAAAGAGAAAA--TTAACTNTATTCGGAAAA-NC-TTGTA-T-ATAAA-C-CNCCTGCNATTT-CAAAATTA-A-TNT---A------TGCA-TCCTCA-ATCT--TAC-N-TATTCCTGATGAAAATTT-CATAAAAAGTAT-AAACAAACTTATTTTTAATTTTATTTGG---AACAAAANTGATTAGGATTAAAAGGAATACTTTGATTGG-NTCCAAT-A--NCAGAAGGNGGTAT-TG-GCGGT-T-TGTCCGACGTATNTTCA-AAANTNAAAGCTATTAAANCNTCNTGGGTACAAAGAATCTGTAACGAAGGGGTTATTAANAGNTTTTG
Reference ( family-2599 ) : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCAAGAATACTACTTGA---AATATTTGAATATTGTG-----CAAATAACCAAAGAT----AT-AC-TTTTA-ATTNTTC--G-ATTTTGAAAAAGCTTTTGATTCTGTCGAATGGAA---TTTCNTG--TTTAAA--GCNTTA-AAAAAATTCAATTTTGG-TGAAAATTTTAT-AAAATGGATTAAA-AT-ACTATA-TA-TAA--CAA-CT--TTC----TT---TAAA--CTAAAA----AA----------T-------G------GA-TCTCTAAAACA----CGTAAAATG-ACCTCGCGTGGAATTAGA---------CAAGGCTGTCC--TATCT--CCGCNACGATTTACNTNTATTTGTTTTCGTGTTAGAAGTACTGGCAGTTNNACTGCGTCGAAATAATGACGAAATACTCGGTCTNTCGCCATGGTGATGATACTAA---TGT--AAGAA-T--AAAAN-CG-TNCAACACGCTGACGATT-T-AACATTA-CTGT--TAAAAGATA-TAATGTCTNTGAAA-A--AGCGATT-GNCNTNAATGAAANCAATA----AATTTTGT-----GAACAT-GCAAGNTCTAAAACTTAATCAT-AANAAAACCGGAAATGTATNCTTCTT----GGANGTTTAA--AAG----ATAG-TNTC-----GAAGA-A---ATTN-G--TGGTA-TA-AAA---GT-AACTAAT--AAAG-CG-GTTAAATGCCTAGGNGTA-----TATTT--AGGNCATGA-TACAGANGAN-TGT-TA--TAN-TAAA--AATTGGAT-GA-AAANT-TAT-AACGANATGGAAAAAA-TTTTTGA-GTCGTGGAAAAAGAGAAAA--TTNACTNTATTCGGAAAA-NC-TTGTA-T-ATAAA-C-CNCTTGCTATTT-CAAAATTA-A-TNT---A------TGCA-TCCTCA-ATTT--TA--C-TATTCCNGATGAAAATTTNCATAAAAAGTAT-AAACGAACTTATTTTCAACTTTATTTGG---AACAAAANTGATTAGAATTAAAAGGAATACTTTGATTGG-NNCCAAT-A--NCAGAAGGTGGTAT-TGAGCGGT-T-TGTCCGACGTGTNTTCA-AAANTNAAAGCTATTGAANCNTCATGGGTANAANGAATCNGTAGTNAAAGGGTTATTAATAGATTTTG
gi|1 : CAAGATGGCTACTTGA---TGTTTTTGA------TA-----CAAATAAT-GAGGGT----AT-AC-TTTTA-AT-GTTA--G-ATTTTGAAAAGGCGTTTGATGCTGTAGAGTGGAA---CTTTGTG--TTTAAG--GTGTTG-AAAAATTTTAAATTTGG-TGAAAATTTTAT-AACATGGATTAAA-AT-ATTATA-CACTAA--CA--CT--TTC----TT---TAAA--TTAAAG----AA----------C-------G------GA-TTTC--AGTCA----TGTAGAATG-----TATGTGGAAT-AGA---------CAGGGATGTCC--TCTTT--CCGCTAT--TTTATATTTATTTGT----GTG--AGA--TACTAGC--TTTGA--GTAT-AAAACAA-GAC-AAATAC--AATT-------AAGGT-ATTATACCAAATATGTTCAAGAAAT--AAAAAACA-TTCAGCACGCTGATGATC-T-AACATTAACTGT--TAAAAGATA-TAAC-TTTATGAAG-ACAAGCGATTTGGCGTTACT---AGCAA-A----AGTTTTGTTCAGCGAA--T-GCAGGGTCCAAA--TTAATTAT-ACTAAAACTG--AATGTATCCTTCTT----CGACGTCTAA--AGA----ATAG-TGTC-----AAAGA-A---ATTA-G--TGGCG-TA-AAA---AC-GACTAAT--AAAG-CA-GTAAAATGTTTAGGAATA-----TACTT--CGGTCATGA-TACAATTGAT-TGT-TA--CGA-TAAA--AATTGGAT-GA-AAACT-TAT-CATGACATGGAAAAAA-TGTTCGA-GTCATGGAAGAAGAGGCGA--CTGACTTTATTTGGCAAA-AC-TTGTATT-ATAAATT-CTCCTGCGATTT-CAAACTTT-A-TTT---A------TGTT-GCCTCA-ATTT--TAC-C-TATTCCTGATGAAAATCTTT-TGAAAAATATAAAACGTAC-TATTTTTAATTTTCTTTGG---AATAAGACTGA-CAGGATTAAAAGGAATACTTTGATTGG----CAAT-GTTTCAGAGGGAGGTAT-TG-GTG---T-TGT-AGATATATATTTA-AAAATTAAAGCTATTAAAGCCTCCTGGATACAAAGAATCAGTAACAAAGGGGTTA-TAAAAGTTTTTG
gi|10 : catatataaagggtaggattattggtgaaaatgATAC--CTAGA---CATATTTGAATATTGTGAGAAACAA-TAACCAAAGAT----A--AC-TTTTA-ATTATCC--A-ATTTTGAGAAAGCTTTTGATTCTGTCGAAGGAAA---TTTCCTC--TTTAAACAGCTTTA-AGAAAATTCAATTTTGGATAAGAATTTTA----AATGGATCAAATAT-TCTATAATA-TCC--CTA-AT--TTT----TCGCATAAA----AAAATATGGA----------T-------G------GA-TCTCTAAAACA----CTTAAAATG-ACCTCGCGTGGAATTAGA---------CAAGGCTGTCC--TATCT--Ct
gi|11 : attaaaggcgatacatcggagaaaaatgctcgtttgATAC--CTAGA---CATATTTGAATATTGTGAGAAACAA-TAACCAAAGAT----A--AC-TTTTA-ATTATCC--A-ATTTTGAGAAAGCTTTTGATTCTGTCGAAGGAAA---TTTCCTC--TTTAAACAGCTTTA-AGAAAATTCAATTTTGGATAAGAATTTTA----AATGGATCAAATAT-TCTATAATA-TCC--CTA-AT--TTT----TCGCATAAA----AAAATATGGA----------T-------G------GA-TCTCTAAAACA----CTTAAAATG-ACCTCGCGTGGAATTAGA---------CAAGGCTGTCC--TATCT--Cgcg
gi|13 : attaaaggcgatacatcggagaaaaatgctcgtttgAAGAATCATCCTTGATTTAAT-TGTGAA-ATT--------CAAATGACCCTC-AT----AT--C-TTGTT-ATTCTGT--G-ACTTTGAAAA-GTTCTTGA--CTGTAGAATGAGAGGTTTTTTTAAATTTAAA--ACACTG-ACAAAATTTAATTATAG-TGAAAAATTT----AGATGGATTAAA-AT-gcg
gi|14 : gatattggatttagtgtAG-TTT------GAAGA-A---CTTT-T--TGGTA-TT-GAA---GT-AACAAAT--AGAG-CG-ACTAAATGTCTA--TGTA-----TCTTTCTACGCCATGA-TAAAGAAGAA-TGT-TA--TAT-CAAA--AATTGGAT-GA-AAATA-TAC-AACGAAATGGAAA
gi|15 : AAA--ATAATG----GA----------T-------G------GA-TATCCAAAACA----TGTTCAATG-AA---AAGAGGAATTAGA---------TAAGGCTGTCC--AATTT--CAGCGATAATT--------TTTCTTTTCGTTGTAGAAATAATGTCAt
gi|16 : ccctatattccgcataaTTTAATTTTGG-TGATAATTTTAT-AAAGTGGATAAAT-AT-ACTATA-TA--AA--GAATCT--ATC----TT---TAGA--TTAAAA----AATAATGGG---T-------G------GA-TGTCAAAAACA----AGTAAA
gi|2 : -TTTTACATTTTTG--GGATTTTCAAAAAGCTTTTGATTCAGTCAAATGGAA---CTTTATG--TTTGAA--ACCTTA-AAGCGATTTAACTTTGG-AGAAAACTTTTT-GCAATGGATTCCA-AT-ACTATA-TA--AA--CAA-CCAATT-----TT---TAAG--CTAAAA----AA----------TAATGGGTG------GA-TTTCCAAAACG----TGT-----------CACATGGAA--AGAAGCATACGGCAGGGCTGCCCGATATCT--TCG--ATGAT--------ATTCCTCTTCGTTGCAGAAATCCTATCAAT----------CAAAATAATGcatagaa
gi|2 : gaattacgacggaGGCA-TA-AAG---GTTAACCGAG--ACTG-CA--TTAAAGTCTTGGGAATT-----TATAT--AGATCATGA-TATAGAGAAA-TGTATA--GAA-AAAA--AATGGGGA-AACAAAAT-TA--AA-GAACTCGAGAGAC-TCTTTGA-ATCATGGAAAAAAAGAAAA--TTAAGTATTTTCGGAAAA-AC-GTGTA-TCATAAA-CAATTTTGCTATAT-TAAAATTA-A-TAT---ACAATCTTACACTCCT---ACCT--TACCC-TAGTGCTGAT----ATT---ATCAAAAACAT-AAATAGATTGATTTTCAATTTCATTTGG---AACAAAAGGGA-TAGAATAAAGTGAAAAACTTTAAAAGG-GGCCACTAA--GCAG--GGTGGCATATG---GGT-TATA---GACGTAGAGTCA-AAAGCAAAAGCAATAAAATGTTCCTGGATAtctaaccgtgagattctgtgatttaaaacgtcaaagatgtccacagacataaacttgatacagcacgccgatgttgctacgctcgcactacgcgacgaaaaagcattacaactagcaatcacctgcataaagaacttcggaaacatttctggattaattttaaatgtaaaccaaacagaatgcttgttattaggctctctgaaagattcagtccgtgttttacacggcataaaggttaaccgagactgcattaaagtcttgggaatttatatagatcatgatatagagaaatgtatagaaaaaaaatggggaaacaaaattaaagaactcgagagactctttgaatcatggaaaaaaagaaaattaagtattttcggaaaaacgtgtatcataaacaattttgctatattaaaattaatatacaatcttacactcctaccttaccctagtgctgatattatcaaaaacataaatagattgattttcaatttcatttggaacaaaagggatagaataaagtgaaaaactttaaaaggggccactaagcagggtggcatatgggttatagacgtagagtcaaaagcaaaagcaataaaatgttcctggata
gi|3 : gaattacgacggattttacatttttgggattttcaaaaagcttttgattcagtcaaatggaactttatgtttgaaaccttaaagcgatttaactttggagaaaactttttgcaatggattccaatactatataaacaaccaatttttaagctaaaaaataatgggtggatttccaaaacgtgtcacatggaaagaagcatacggcagggctgcccgatatcttcgatgatattcctcttcgttgcagaaatcctatcaatcaaaataatgtctaaccgtgagattctgtgatttaaaacgtcaaagatgtccacagacataaacttgatacagcacgccgatgttgctacgctcgcactacgcgacgaaaaagcattacaactagcaatcacctgcataaagaacttcggaaacatttctggattaattttaaatgtaaaccaaacagaatgcttgttattaggctctctgaaagattcagtccgtgttttacacCAAGAATACTACTTGA---AATATTTGAATATTGTG-----CAATTAATC-AGGATTTTGATGGCATTTTA-CTTTTCCTAG-ATTTTGAAAATGCTTTTGATTCTGTTGAATATGA---TTTCATG--TACAAA--ACTCTAGAAAAAATTCGATTTTGG-TGAAAATTTTATCAAAATGA--TAAA-ATCACTATATTC-CAAGCCAA-TT--TTCAA--TT---CAAGTTTTAAAA----AATCACAACGGTT-------G------GG-TGTCTAAATCATGTGCATGAAATGCAGATCAAGAGGCATTAGA---------CAAAGATGTCC--TGTGTTATCACTAC----TACATGTATTTATTTTCATGTTAGAAATACTAGCAGTTCCACTG---AAAAATAATGACGAAATACTCGGTCTATCGCCA-GGTGATGATACTAA---TG---AAAAA-TTAAAAAT-CG-TGCAACATGCAGATGATTGTAAATATT---TGT--TAAAAGATAGTAAT-TCGTTGAAA-A--------------------AAAACAATAGGTGGATTTAGT------AATGTCGC-AGGCCCGAAATTGAATTTG-GATAAAACAG--AATG----CTTATTGACAGGAAGTCTTATTGAG----AT-G-TATCTAAATGAAGA-ATATATTT-G--TGGTGTTA-AAA---TT-GA-TACA--AAAA-TACGTAAAATCAATAGGTGCA-----TATTT--AGGACATGA-TA---AGGA--TAT-TAGCTAT-GAAATGAACTGGA
gi|4 : tcatatgaataaaggttctacatAT----ATTAC-TTTTA-----CTC--G-ATTTTCAAAGAGCATTTGATTCCGTCGAATGGTC---TTTTATG---ATAAA--GCACTC-AAGTTCTTTAGGTTTGG-ACAAAAATTCAC--CAATGGATTCAA-AT-TTTGTA-T--TAA--AAG-C-----CAGAATT---TAGA--CTAAAA----AA----------T-------AATAATTGACTGTCAAAAACA----TGTAAAGTG-A---GGCGGGGAATTCGT---------CAAGGATGTTC--GATAT--CAGCGATGATTT--TTCTATTTGT-----TGTT-GAAGTATTGGCAATTAGATTACGTCGA---AATGACACAAT-------------TCATGGT----------------------AG-T--AAAAA-CATTACAACATGCTGACGATT-C-TACATTA-CCTT--TGAGGGACA-TTACGTCTGTAAAATC--AGCGATT-------AATGAAATCAATA----CTTTCAGC-----AAATAC-TC-TGGTATGAAATTAAACCTT-TCAAAAACAG--AGCGCATTTTATTA----GGACCATTAA--AAGGCCAACAGATACA-----GACGG-C---ATTA-C--T-GTA-TA--------T-GAC---------G-CG-------TGCGTAAAGGTAATAGGTATTC----GGCATGA-TAAAGATTTA-TGT-TT--TAA-AAAT--AATTGGAC-CA-AAAAG-ATT-GATGATATAGAAAAGC-TGTTTTA-ATCGTGTAAAAA-ATAAAG--TTAAcaa
gi|5 : aAAGGTTTAAAACTTAATCAT-AAGTAAACCGGAAATA-ATACTTCTG----GGATCTTTAA--AAG----GAAG-TTTT-----TGATATA---ATTA-GAAGGGAA-TA-AAA---GT-AA--AATGAAAAGACA-GTTAAATGCCTGGGTGTA-----T-TTT--AGGACATGAATG-AAACAAGGTGT-TA--TAACTCAG--AATTGGAT-GA-AAGGTATAT-AATAATATGGGAAAAACTTTTTGATGTCGTGGAAAAAGAGAAAAGCTTTACTATATTTGAAAAA-TG-TTGTA-T-ATAAA---CACCTGCT-TTT-CAAAATTA-A-TTTTACA------TGCA-TCCT-A---CT--TA--A-TATGCCAAATGAAAAGTTACATAAAAAGTAT-TAACAAACTTATTTTTAACTTTATTTGG---AACAAAACTGATTAGAATTAAAA-GAATACATTGATTGG-TTCTAAT-A--ACAAAATGTGGTAT-TGAGTGGT-T-TGTCCGATGTGTTTTCA-AAACTGAAAGCT-TTGAAACATCATGGGT
gi|6 : AAGGTTTAAAACTTAATCAT-AAGTAAACCGGAAATA-ATACTTCTG----GGATCTTTAA--AAG----GAAG-TTTT-----TGATATA---ATTA-GAAGGGAA-TA-AAA---GT-AA--AATGAAAAGACA-GTTAAATGCCTGGGTGTA-----T-TTT--AGGACATGAATG-AAACAAGGTGT-TA--TAACTCAG--AATTGGAT-GA-AAGGTATAT-AATAATATGGGAAAAACTTTTTGATGTCGTGGAAAAAGAGAAAAGCTTTACTATATTTGAAAAA-TG-TTGTA-T-ATAAA---CACCTGCT-TTT-CAAAATTA-A-TTTTACA------TGCA-TCCT-A---CT--TA--A-TATGCCAAATGAAAAGTTACATAAAAAGTAT-TAACAAACTTATTTTTAACTTTATTTGG---AACAAAACTGATTAGAATTAAAA-GAATACATTGATTGG-TTCTAAT-A--ACAAAATGTGGTAT-TGAGTGGT-T-TGTCCGATGTGTTTTCA-AAACTGAAAGCT-TTGAAACATCATGGGT
gi|7 : AAATTAATTAT-GCTAAAACTG--AATGTATCCTTCTT----GGAAGTTTAA--AGA----ATAG-TGTC-----AAAGA-A---ATTC-G--TGGCA-TA-AAA---AC-GACTGGT--AAAG-CA-ATAAAATGTTTAGGAATA-----TACTT--CGGTCATGA-TACAATTGAT-TGT-TA--CCA-TAAA--AATTGGAT-GA-AAACT-TAT-CATGACATGGAAAAAA-TGTTTGA-GACATGAAAGAAAAGGCAA--CTAACTTTATTTGGCATA-AC-TTGTATT-ATAAATT-CTCTTGCGTTTT-CTAAATTT-A-TTT---A------TGTT-GCCTCA-ATTT--TAC-C-TATTCCTGATGAAAATCTTT-TGAAAAATAT-AA---AAC------------------GG---AATAAGAATGA-CAGGATTAAAAGGAATACTTTGATTGG-CT-AAAT-GT-TTAGAGGGATGTA-------GGTGT-TGGTAGATATATATTTA-AAAATTAAAGCTATT-AAGCCTCTTGGATACAAAGAAT-TATAGTCAAAGGGTTATTAATAGATTTTG
gi|8 : -T--AAAAG-TG-TACAACGCTCAGACGATT-T-ATCA--G-CTGCGGTAAAAGATG-AAATATCTATGAAA-A--A-----T-GCCCTAAATGAAATCAATA----AATTTTGT-----GAATAT-GCTCGTTCTAAAA-TTAAT-ATCGACAAAACCG--AATGTATTTTGCTT----GGAAGGTTGC--AAA----ATAA-GTTT-----GAAGA-A---CTTT-T--TAGTA-TT-ACA---GT-AACAAAT--AGAG-CG-ACTAAATGTCTAGGTATC-----TTTCT--AGGTCATGA-TAAAGAAGAA-TGT-TA--TAT-CAAA--AATTGGAT-GA-AAATA-TAC-AACGAAATGGAAAAAT-TGTTTGA-ATCCTGGAAAAGAAGAAAA--TTAACACTTTTTGGTAAA-GC-ATGCA-TAATAA----CACTTGCCATTT-CAAAATAA-G-TAT---A------TGTA-TCTTCA-ATAT--TG--TGTTTTCCTGATAAAGA
gi|9 : gaaat-A---ATTATA--TGGTA-TACAAATTTAT-AACTAAT--GCAC-CG-ATTAAATGTTTAGGAATA-----TATAT--AGGGCATGC-TATTAACCAA-TGC-TA--CAT-TAAA--GATTGGACGGA-AAAAT-GATAAACTAGA--GAGAAAA-CTTACAA---TATGGAACACGAGAAAA--TTGACTTTATACGGAAAATGCACTGTA---ATGAA-C-ACTTTGGCATTGACACAATTATACTAT---AG-----TGCA-T----ATATTTTGTA--A-TATCCCGGA--AAAATTT-CATAAACAG---------------TTTTCAATTTTCTTTGGGGCAACAGAAA--AC--GGATAAAAAGAAATACTTTGATTGGAAAACAAG-A----AGAAGGAGGGAT-AG-GCA---T-TGT-TGACAT-TGTTTGTAAATTAAAAGCGCTTAAATCGGCATGGGTAAAACGAATCTGTAATGAA
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|12 ): AGAAAGCTTAATGCTAATAAAATAATGTGTAATCGTGAGATTCTGGGATTTAAAACGTCAAAGATGTTCGCAGACATAACATTGATACAACATGCTGACGATACTACGCTCGCATTACACGACCAAAAAGCATTACAATTAGCAATCACTTGTATAAAGATCTGAATTAATTCTAACTGTTAACAAATACATACTGTGTTA
Alignments
lowQualScore : 1111111111111111111111111111111111111111111111 1111111111111111111111111
lowQualScore : 11 111 11111 1 111 222222222 111111111 111 11 1 2222 1 55555555555555555555555555 77777777777777777 111111 11111 222222222222 222222222 666666666666 111 55555555555555 1 5555555555555555555555555555555555555555555555 2222 111 1111 11 1 1111 0000000000000000000000000 222222 333333 111 11 11 1 11111 1111 1111111 11111 11111 1111111 11 11111 11111 11 1 11 222 22222 222 11111 111 1 11111111111 111 22 333333333333 3333333333333 1 1
lowQualScore : 66 1 8 1 111 66666 5 333 777777777 5 5 111111111 3 0 000 1 77 55 1 5 0 7777 0 66 22222222222222222222222222 0 66 44444444444444444 444444 5 1 5 11111 999999999999 1 1 222222222 0 77 5 5 77 666666666666 1 3 5 000 11111111111111 3 0 3 2 4444444444444444444444444444444444444444444444 2222 1 1 444 7777 33 0 4444 6 0 7777777777777777777777777 1 3 333333 1 111111 777 11 8 4 8888 1 55 4 3 33333 11 77 2222 0 5 1 8888888 00000 77777 0 4 4 777 4 5555555 1 8 00 1 11 1 00000 5 666 1 1 11111 55 4 99 66 4 999 4 4 1 00 1 0 1 2 33 1 1 1 1 99999 000 77777 99 5 5 5 1 000 5 4 88888 0 555 2 1 0 3 1 99999999999 3 111 44 22 6 000000000000 1 6 0000000000000 0 4 1 6 1 1 1 4 1 1 1 6 44 5 1 1
lowQualScore : .. . . . ... ..... . ... ......... . . ......... . . ... . .. .. . . . .... . .. .......................... . .. ................. ...... . . . ..... ............ . . ......... . .. . . .. ............ . . . ... .............. . . . . .............................................. .... . . ... .... .. . .... . . ......................... . . ...... . ...... ... .. . . .... . .. . . ..... .. .. .... . . . ....... ..... ..... . . . ... . ....... . . .. . .. . ..... . ... . . ..... .. . .. .. . ... . . . .. . . . . .. . . . . ..... ... ..... .. . . . . ... . . ..... . ... . . . . . ........... . ... .. .. . ............ . . ............. . . . . . . . . . . . . .. . . .
lowQualScore : 00 4 8 0 888 22222 8 666 555555555 7 7 777777777 9 4 000 0 99 77 0 7 0 5555 0 00 00000000000000000000000000 8 99 11111111111111111 444444 0 0 9 88888 999999999999 9 4 999999999 7 99 3 0 00 000000000000 0 8 6 444 22222222222222 2 8 2 0 0000000000000000000000000000000000000000000000 0000 2 0 888 2222 88 0 2222 5 8 2222222222222222222222222 0 2 222222 0 555555 888 00 9 0 4444 7 77 1 0 77777 77 99 1111 6 0 0 1111111 33333 88888 7 0 0 000 0 5555555 2 0 44 2 99 0 00000 8 222 0 0 99999 55 0 00 11 0 333 4 4 0 22 0 0 1 2 88 2 0 4 6 99999 999 77777 77 7 7 7 0 000 7 0 77777 4 666 1 9 3 3 7 00000000000 0 777 22 22 7 777777777777 0 7 3333333333333 7 2 0 7 0 0 3 2 0 0 0 7 33 5 0 0
consensus : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCAAGAATACTACTTGACGTATTTGAATATTGTGAGAAACAAATAACCGAGGAT----AT-A-C-TTTTA-ATTNTCC--G-ATTTTGAAAAAGCTTTTGATTCTGTCGAATGGAA---TTTCNTG--TTTAA--AGCNCTA-AAAAAATTTAATTTTGG-TGAAAATTTTAT-AAAATGGATTAAA-AT-NCTAT-A-TA-TAA--CAA-CT--TTC----TTCAAA--TTAAAAA------AT-A-------TG------GA-TNTCNAAAACA----CGTAAAAT---G-A--TCGCGTGGAATTAGA---------CAAGGCTGTCC--TATCTCNGCGATGATT--TA----TATTTNTTTTCGTGTTAGAAATACTAGCAATTCGACTGCGTCAAAATAATGACGAAAT--A--CGGTC-------AGGT-AT-ATACCAA---TG---AAGAA-TAAAAA-CG-TACAACACGCNGACGATT-T-AACATTA-CTGT--TAAAAGATA-TAA--CGTCTATGAAA-A--AGCGATT----GCT---AATGAAANCAATA----AATTTNGT-----GAATAC-GCANGGTCTAAAACTTAATCAT-GANAAAACCG--AATGTATNCTTCTT----GGANGTTTAA--AAG----ATAG-TNTC-----GAAGA-A---ATTN-G--TGGTA-TA-AAA---GT-AACTAAT--AAAG-CG-GTTAAATGCCTAGGNGTA-----TATTT--AGGNCATGATANAGACGAA-T--GT-TATAAC-AAAAATTGGAC-GA-AAANT-TAT-AACGANATGGAAAAAA-TNTTTGA-GTCGTGGAAAAAGAGAAAA--TTAACTNTATTCGGAAAA-NC-TTGTA-T-ATAAA-C-CNCCTGCNATTT-CAAAATTA-A-TNT---A-TGCATCCT-CA-ATCTTAC-NTATNCCTGATGAAAATTT-CATAAAAAGTAT-AAACAAACTTATTTTTAATTTTATTTGG---AACAAAANTGATTAGGATTAAAAGGAATACTTTGATTGGNTCNAAT-A--NCAGAAGGNGGTAT-TG-GTGGTT-TGTCCGACGTATNTTCA-AAANTNAAAGCTATTAAANCNTCNTGGGTACAAAGAATCTGTAACGAAGGGGTTATTAANAGNTTTTG
Reference ( family-2599 ) : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCAAGAATACTACTTGANATATTTGAATATTGTGAGAAACAAATAACCGAGGAT----AT-A-C-TTTTA-ATTNTCC--G-ATTTTGAAAAAGCTTTTGATTCTGTCGAATGGAA---TTTCNTG--TTTAA--AGCNCTA-AAAAAATTTAATTTTGG-TGAAAATTTTAT-AAAATGGATTAAA-AT-NCTAT-A-TA-TAA--CAA-CT--TTC----TTTAAA--TTAAAAA------A----------TG------GA-TNTCNAAAACA----CGTAAAAT---G-A--TCGCGTGGAATTAGA---------CAAGGCTGTCC--TATCTCCGCNATGATT--TA-AT-TATTTNTTTTCGTGNTAGAAATACTAGCAATTCGACTGCGTCAAAATAATGACGAAAT--A--CGGTC-----CCAGGT-AT-ATACCAA---TG---AAGAA-TAAAAA-CG-TACAACACGCNGACGATT-T-AACATTA-CTGT--TAAAAGATA-TAA--CGTCTATGAAA-A--AGCGATT----GCT---AATGAAANCAATA----AATTTNGT-----GAATAT-GCANGGTCTAAAACTTAATCAT-GANAAAACCG--AATGTATNCTTCTT----GGANGTTTAA--AAG----ATAG-TNTC-----GAAGA-A---ATTN-G--TGGTA-TA-AAA---GT-AACTAAT--AAAG-CG-GTTAAATGCCTAGGNGTA-----TATTT--AGGNCATGATANAGACGAA-T--GT-TATAAN-AAAAATTGGAC-GA-AAANT-TAT-AACGANATGGAAAAAA-TNTTTGA-GTCGTGGAAAAAGAGAAAA--TTAACTNTATTCGGAAAA-NC-TTGTA-T-ATAAA-C-CNCCTGCNATTT-CAAAATTA-A-TNT---A-TGCATCCT-CA-ATCTTAC-NTATTCCTGATGAAAATTT-CATAAAAAGTAT-AAACAAACTTATTTTTAATTTTATTTGG---AACAAAANTGATTAGGATTAAAAGGAATACTTTGATTGGNTCCAAT-A--NCAGAAGGNGGTAT-TG-GCGGTT-TGTCCGACGTATNTTCA-AAANTNAAAGCTATTAAANCNTCNTGGGTACAAAGAATCTGTAACGAAGGGGTTATTAANAGNTTTTG
gi|1 : CAAGATGGCTACTTGATGTTTTTGA------T-----ACAAATAAT-GAGGGT----AT-A-C-TTTTA-AT-GTTA--G-ATTTTGAAAAGGCGTTTGATGCTGTAGAGTGGAA---CTTTGTG--TTTAA--GGTGTTG-AAAAATTTTAAATTTGG-TGAAAATTTTAT-AACATGGATTAAA-AT-ATTAT-A-CACTAA--CA--CT--TTC----TTTAAA--TTAAAGA------A----------CG------GA-TTTC--AGTCA----TGTAGAAT---GTA--T---GTGGAAT-AGA---------CAGGGATGTCC--TCTTTCCGCTAT--TT--TA----TATTTATTT--GTGT--GAGATACTAGC--TTTGA--GTAT-AAAACAA-GAC-AAAT--A--CAATT-----A-AGGT-ATTATACCAAATATGTTCAAGAAATAAAAAACA-TTCAGCACGCTGATGATC-T-AACATTAACTGT--TAAAAGATA-TAA--C-TTTATGAAG-ACAAGCGATTTGGCGTT---ACT---AGCAA-A----AGTTTTGTTCAGCGAAT---GCAGGGTCCAAA--TTAATTAT-ACTAAAACTG--AATGTATCCTTCTT----CGACGTCTAA--AGA----ATAG-TGTC-----AAAGA-A---ATTA-G--TGGCG-TA-AAA---AC-GACTAAT--AAAG-CA-GTAAAATGTTTAGGAATA-----TACTT--CGGTCATGATACAATTGAT-T--GT-TACGAT-AAAAATTGGAT-GA-AAACT-TAT-CATGACATGGAAAAAA-TGTTCGA-GTCATGGAAGAAGAGGCGA--CTGACTTTATTTGGCAAA-AC-TTGTATT-ATAAATT-CTCCTGCGATTT-CAAACTTT-A-TTT---A-TGTTGCCT-CA-ATTTTAC-CTATTCCTGATGAAAATCT-TTTGAAAAATATAAAACGTAC-TATTTTTAATTTTCTTTGG---AATAAGACTGA-CAGGATTAAAAGGAATACTTTGATTGG---CAAT-GTTTCAGAGGGAGGTAT-TG-GTG--T-TGT-AGATATATATTTA-AAAATTAAAGCTATTAAAGCCTCCTGGATACAAAGAATCAGTAACAAAGGGGTTA-TAAAAGTTTTTG
gi|10 : catatataaagggtaggattattggtgaaaatgATAC--CTAGACATATTTGAATATTGTGAGAAACAA-TAACCAAAGAT----A--A-C-TTTTA-ATTATCC--A-ATTTTGAGAAAGCTTTTGATTCTGTCGAAGGAAA---TTTCCTC--TTTAAACAGCTTTA-AGAAAATTCAATTTTGGATAAGAATTTT----AAATGGATCAAATAT-TCTATAA-TA-TCC--CTA-AT--TT-----TTCGCA--TAAAAAAATATGGA----------TG------GA-TCTCTAAAACA----CTTAAAAT---G-ACCTCGCGTGGAATTAGA---------CAAGGCTGTCC--TATCTCt
gi|11 : attaaaggcgatacatcggagaaaaatgctcgtttgATAC--CTAGACATATTTGAATATTGTGAGAAACAA-TAACCAAAGAT----A--A-C-TTTTA-ATTATCC--A-ATTTTGAGAAAGCTTTTGATTCTGTCGAAGGAAA---TTTCCTC--TTTAAACAGCTTTA-AGAAAATTCAATTTTGGATAAGAATTTT----AAATGGATCAAATAT-TCTATAA-TA-TCC--CTA-AT--TT-----TTCGCA--TAAAAAAATATGGA----------TG------GA-TCTCTAAAACA----CTTAAAAT---G-ACCTCGCGTGGAATTAGA---------CAAGGCTGTCC--TATCTCgcg
gi|13 : attaaaggcgatacatcggagaaaaatgctcgtttgAAGAATCATCCTTGA----TTTAA---TTGTGAAATTCAAATGACCC-TCAT----AT---C-TTGTT-ATTCTGT--G-ACTTTGAAAA-GTTCTTGA--CTGTAGAATGAGAGGTTTTTTTAAATTTAA--AACACTG-ACAAAATTTAATTATAG-TGAAAAATTT----AGATGGATTAAA-AT-gcg
gi|14 : gatattggatttagtgtAG-TTT------GAAGA-A---CTTT-T--TGGTA-TT-GAA---GT-AACAAAT--AGAG-CG-ACTAAATGTCTA--TGTA-----TCTTTCTACGCCATGATAAAGAAGAA-T--GT-TATATC-AAAAATTGGAT-GA-AAATA-TAC-AACGAAATGGAAA
gi|15 : AAA--ATAATGG------A----------TG------GA-TATCCAAAACA----TGTTCAAT---G-A---AAAGAGGAATTAGA---------TAAGGCTGTCC--AATTTCAGCGATAATT----------TTTCTTTTCGTTGTAGAAATAt
gi|16 : ccctatattccgcataaTTTAATTTTGG-TGATAATTTTAT-AAAGTGGATAAAT-AT-ACTAT-A-TA--AA--GAATCT--ATC----TTTAGA--TTAAAAA------ATAATGGG---TG------GA-TGTCAAAAACA----AGTAAAatgtca
gi|2 : -TTTTACATTTTTG--GGATTTTCAAAAAGCTTTTGATTCAGTCAAATGGAA---CTTTATG--TTTGA--AACCTTA-AAGCGATTTAACTTTGG-AGAAAACTTTTT-GCAATGGATTCCA-AT-ACTAT-A-TA--AA--CAA-CCAATT-----TTTAAG--CTAAAAA------ATAATGGG---TG------GA-TTTCCAAAACG----TG--------------TCACATGGAA--AGAAGCATACGGCAGGGCTGCCCGATATCTTCG--ATGA----------TATTCCTCTTCGTTGCAGAAATCCTATCAA----------TCAAAATAATGcatagaa
gi|2 : gaattacgacggaGGCA-TA-AAG---GTTAACCGAG--ACTG-CA--TTAAAGTCTTGGGAATT-----TATAT--AGATCATGATATAGAGAAA-T--GTATAGAAA-AAAAATGGGGA-AACAAAAT-TA--AA-GAACTCGAGAGAC-TCTTTGA-ATCATGGAAAAAAAGAAAA--TTAAGTATTTTCGGAAAA-AC-GTGTA-TCATAAA-CAATTTTGCTATAT-TAAAATTA-A-TAT---A-CA-ATCTTACA-CTCCTAC-CTTACCCTAGTGCTGATAT-TATCAAAAACAT-AAATAGATTGATTTTCAATTTCATTTGG---AACAAAAGGGA-TAGAATAAAGTGAAAAACTTTAAAAGGGGCCACTAA--GCAG--GGTGGCATATG---GGTTATA---GACGTAGAGTCA-AAAGCAAAAGCAATAAAATGTTCCTGGATAtctaaccgtgagattctgtgatttaaaacgtcaaagatgtccacagacataaacttgatacagcacgccgatgttgctacgctcgcactacgcgacgaaaaagcattacaactagcaatcacctgcataaagaacttcggaaacatttctggattaattttaaatgtaaaccaaacagaatgcttgttattaggctctctgaaagattcagtccgtgttttacacggcataaaggttaaccgagactgcattaaagtcttgggaatttatatagatcatgatatagagaaatgtatagaaaaaaaatggggaaacaaaattaaagaactcgagagactctttgaatcatggaaaaaaagaaaattaagtattttcggaaaaacgtgtatcataaacaattttgctatattaaaattaatatacaatcttacactcctaccttaccctagtgctgatattatcaaaaacataaatagattgattttcaatttcatttggaacaaaagggatagaataaagtgaaaaactttaaaaggggccactaagcagggtggcatatgggttatagacgtagagtcaaaagcaaaagcaataaaatgttcctggata
gi|3 : gaattacgacggattttacatttttgggattttcaaaaagcttttgattcagtcaaatggaactttatgtttgaaaccttaaagcgatttaactttggagaaaactttttgcaatggattccaatactatataaacaaccaatttttaagctaaaaaataatgggtggatttccaaaacgtgtcacatggaaagaagcatacggcagggctgcccgatatcttcgatgatattcctcttcgttgcagaaatcctatcaatcaaaataatgtctaaccgtgagattctgtgatttaaaacgtcaaagatgtccacagacataaacttgatacagcacgccgatgttgctacgctcgcactacgcgacgaaaaagcattacaactagcaatcacctgcataaagaacttcggaaacatttctggattaattttaaatgtaaaccaaacagaatgcttgttattaggctctctgaaagattcagtccgtgttttacacCAAGAATACTACTTGAAATATTTGAATATTGTG-----CAATTAATC-AGGATTTTGAT-GGCATTTTA-CTTTTCCTAG-ATTTTGAAAATGCTTTTGATTCTGTTGAATATGA---TTTCATG--TACAA--AACTCTAGAAAAAATTCGATTTTGG-TGAAAATTTTATCAAAATGA--TAAA-ATCACTAT-ATTC-CAAGCCAA-TT--TTCAA--TTCAAGTTTTAAAAA------ATCACAACGGTTG------GG-TGTCTAAATCATGTGCATGAAATGCAG-A--TCAAGAGGCATTAGA---------CAAAGATGTCC--TGT----GTTATCACTACTACATGTATTTATTTTCATGTTAGAAATACTAGCAGTTCCACTG---AAAAATAATGACGAAAT--ACTCGGTCTATCGCCAGGTGATGATACTAA---TG---AAAAATTAAAAATCG-TGCAACATGCAGATGATTGTAAATATT---TGT--TAAAAGATAGTAATTCGT---TGAAA-A-----------------------AAAACAATAGGTGGATTTAGT------AATGTCGCA-GGCCCGAAATTGAATTTG-GATAAAACAG--AATG----CTTATTGACAGGAAGTCTTATTGAG----AT-G-TATCTAAATGAAGA-ATATATTT-G--TGGTGTTA-AAA---TT-GA-TACA--AAAA-TACGTAAAATCAATAGGTGCA-----TATTT--AGGACATGATAAGGAT--A-TTAGC-TATGAA-ATGAACTGGAC-AA-
gi|4 : tcatatgaataaaggttctacatAT----ATTA-C-TTTTA-CT----C--G-ATTTTCAAAGAGCATTTGATTCCGTCGAATGGTC---TTTTATG---ATAA--AGCACTC-AAGTTCTTTAGGTTTGG-ACAAAAATTCAC--CAATGGATTCAA-AT-TTTGT-A-T--TAA--AAG-C-----CAGAATTTAGA--CTAAAAA------A----------TAATAATTGACTGTCAAAAACA----TGTAAAGT---G-A---GGCGGGGAATTCGT---------CAAGGATGTTC--GATATCAGCGATGATT--TT-TC-TATTTGT-----TGTT-GAAGTATTGGCAATTAGATTACGTCGA---AATGACACAATTCA--TGGT----------------------------------AG-TAAAAA-CATTACAACATGCTGACGATT-C-TACATTA-CCTT--TGAGGGACA-TTA--CGTCTGTAAAATC--AGCGAT-------T---AATGAAATCAATA----CTTTCAGC-----AAATAC-TC-TGGTATGAAATTAAACCTT-TCAAAAACAG--AGCGCATTTTATTA----GGACCATTAA--AAGGCCAACAGATACA-----GACGG-C---ATTA-C--T-GTA-TA--------T-GAC---------G-CG-------TGCGTAAAGGTAATAGGTATTC----GGCATGATAAAGATTTA-T--GT-TTTAAA-AATAATTGGAC-CA-AAAAG-ATT-GATGATATAGAAAAGC-TGTTTTA-ATCGTGTAAAAA-ATAAAG--TTAA
gi|5 : aAAGGTTTAAAACTTAATCAT-AAGTAAACCGGAAATA-ATACTTCTG----GGATCTTTAA--AAG----GAAG-TTTT-----TGATATA---ATTA-GAAGGGAA-TA-AAA---GT-AA--AATGAAAAGACA-GTTAAATGCCTGGGTGTA-----T-TTT--AGGACATGAATGAAACAAGGT--GT-TATAACTCAGAATTGGAT-GA-AAGGTATAT-AATAATATGGGAAAAACTTTTTGATGTCGTGGAAAAAGAGAAAAGCTTTACTATATTTGAAAAA-TG-TTGTA-T-ATAAA-C--ACCTGCT-TTT-CAAAATTA-A-TTTTACA-TGCATCCT--A---CTTA--ATATGCCAAATGAAAAGTTACATAAAAAGTAT-TAACAAACTTATTTTTAACTTTATTTGG---AACAAAACTGATTAGAATTAAAA-GAATACATTGATTGGTTCTAAT-A--ACAAAATGTGGTAT-TGAGTGGTT-TGTCCGATGTGTTTTCA-AAACTGAAAGCT-TTGAAACATCATGGGT
gi|6 : AAGGTTTAAAACTTAATCAT-AAGTAAACCGGAAATA-ATACTTCTG----GGATCTTTAA--AAG----GAAG-TTTT-----TGATATA---ATTA-GAAGGGAA-TA-AAA---GT-AA--AATGAAAAGACA-GTTAAATGCCTGGGTGTA-----T-TTT--AGGACATGAATGAAACAAGGT--GT-TATAACTCAGAATTGGAT-GA-AAGGTATAT-AATAATATGGGAAAAACTTTTTGATGTCGTGGAAAAAGAGAAAAGCTTTACTATATTTGAAAAA-TG-TTGTA-T-ATAAA-C--ACCTGCT-TTT-CAAAATTA-A-TTTTACA-TGCATCCT--A---CTTA--ATATGCCAAATGAAAAGTTACATAAAAAGTAT-TAACAAACTTATTTTTAACTTTATTTGG---AACAAAACTGATTAGAATTAAAA-GAATACATTGATTGGTTCTAAT-A--ACAAAATGTGGTAT-TGAGTGGTT-TGTCCGATGTGTTTTCA-AAACTGAAAGCT-TTGAAACATCATGGGT
gi|7 : AAATTAATTAT-GCTAAAACTG--AATGTATCCTTCTT----GGAAGTTTAA--AGA----ATAG-TGTC-----AAAGA-A---ATTC-G--TGGCA-TA-AAA---AC-GACTGGT--AAAG-CA-ATAAAATGTTTAGGAATA-----TACTT--CGGTCATGATACAATTGAT-T--GT-TACCAT-AAAAATTGGAT-GA-AAACT-TAT-CATGACATGGAAAAAA-TGTTTGA-GACATGAAAGAAAAGGCAA--CTAACTTTATTTGGCATA-AC-TTGTATT-ATAAATT-CTCTTGCGTTTT-CTAAATTT-A-TTT---A-TGTTGCCT-CA-ATTTTAC-CTATTCCTGATGAAAATCT-TTTGAAAAATAT-A---AAAC------------------GG---AATAAGAATGA-CAGGATTAAAAGGAATACTTTGATTGGCT-AAAT-GT-TTAGAGGGATGTA---G-GTG--T-TGGTAGATATATATTTA-AAAATTAAAGCTATT-AAGCCTCTTGGATACAAAGAAT-TATAGTCAAAGGGTTATTAATAGATTTTG
gi|8 : -TAAAAG-TG-TACAACGCTCAGACGATT-T-ATCA--G-CTGCGGTAAAAGATG-AAA--TATCTATGAAA-A--A-----T----GCCCTAAATGAAATCAATA----AATTTTGT-----GAATAT-GCTCGTTCTAAAA-TTAAT-ATCGACAAAACCG--AATGTATTTTGCTT----GGAAGGTTGC--AAA----ATAA-GTTT-----GAAGA-A---CTTT-T--TAGTA-TT-ACA---GT-AACAAAT--AGAG-CG-ACTAAATGTCTAGGTATC-----TTTCT--AGGTCATGATAAAGAAGAA-T--GT-TATATC-AAAAATTGGAT-GA-AAATA-TAC-AACGAAATGGAAAAAT-TGTTTGA-ATCCTGGAAAAGAAGAAAA--TTAACACTTTTTGGTAAA-GC-ATGCA-TAATAA----CACTTGCCATTT-CAAAATAA-G-TAT---A-TGTATCTT-CA-ATATTGT-GTTTTCCTGATAAAGA
gi|9 : gaaat-A---ATTATA--TGGTA-TACAAATTTAT-AACTAAT--GCAC-CG-ATTAAATGTTTAGGAATA-----TATAT--AGGGCATGCTATTAACCAA-T--GC-TACATT-AAAGATTGGACGGA-AAAAT-GATAAACTAGA--GAGAAAA--CTTACA-AT-ATGGAACACGAGAAAA--TTGACTTTATACGGAAAATGCACTGTA---ATGAA-C-ACTTTGGCATTGACACAATTATACTAT---AGTGCAT-----ATATTTTGTAATATCCCGGA--AAAATTT-CATAAACAG---------------TTTTCAATTTTCTTTGGGGCAACAGAAA--AC--GGATAAAAAGAAATACTTTGATTGGA--AAACAA--GAAGAAGGAGGGAT-AG-GCA--T-TGT-TGACAT-TGTTTGTAAATTAAAAGCGCTTAAATCGGCATGGGTAAAACGAATCTGTAATGAA
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|12 ): AGAAAGCTTAATGCTAATAAAATAATGTGTAATCGTGAGATTCTGGGATTTAAAACGTCAAAGATGTTCGCAGACATAACATTGATACAACATGCTGACGATACTACGCTCGCATTACACGACCAAAAAGCATTACAATTAGCAATCACTTGTATAAAGATCTGAATTAATTCTAACTGTTAACAAATACATACTGTGTTA
Alignments
lowQualScore : 111111111111111111111111111111111111111111111 1111111111111111111111111
lowQualScore : 11 11 111 11111 1 111 222222222 111111111 111 11 1 2222 1 55555555555555555555555555 888888888888 11111 222222222222 222222222 111111 1 44444444 111 55555555555555 1 444444444444444444444444444444444444444444444 2222 111 1111 11 1 1111 0000000000000000000000000 222222 333333 111 11 11 1 11111 1111 1111111 11111 11111 1111111 11 11111 11111 11 11 1 11 222 222 222 1111 111 1 11111111111 111 22 2222 11111 111 22 22 1 1
lowQualScore : 66 1 22 1 111 66666 5 333 777777777 5 5 111111111 3 0 000 1 77 55 1 5 0 7777 0 66 22222222222222222222222222 2 77 999999999999 1 5 11111 999999999999 1 1 222222222 0 555555 1 2 33333333 1 0 8 000 11111111111111 3 0 3 2 555555555555555555555555555555555555555555555 2222 1 1 444 7777 33 0 4444 6 0 7777777777777777777777777 1 3 333333 1 111111 777 11 8 4 8888 1 55 4 3 33333 11 77 2222 0 5 1 8888888 00000 77777 0 4 4 777 4 5555555 1 8 00 1 11 1 00000 5 666 1 1 11111 55 4 00 2 4 4 999 88 1 00 1 0 1 2 33 1 1 1 1 99999 000 999 1 99 5 5 5 1 000 5 4 6666 0 555 1 1 0 3 99999999999 3 111 44 22 6 2222 99999 6 1 555 22 22 0 4 1 6 1 1 1 4 1 1 1 6 44 5 1 1
lowQualScore : .. . .. . ... ..... . ... ......... . . ......... . . ... . .. .. . . . .... . .. .......................... . .. ............ . . ..... ............ . . ......... . ...... . . ........ . . . ... .............. . . . . ............................................. .... . . ... .... .. . .... . . ......................... . . ...... . ...... ... .. . . .... . .. . . ..... .. .. .... . . . ....... ..... ..... . . . ... . ....... . . .. . .. . ..... . ... . . ..... .. . .. . . . ... .. . .. . . . . .. . . . . ..... ... ... . .. . . . . ... . . .... . ... . . . . ........... . ... .. .. . .... ..... . . ... .. .. . . . . . . . . . . . . .. . . .
lowQualScore : 00 4 88 0 888 22222 8 666 555555555 7 7 777777777 9 4 000 0 99 77 0 7 0 5555 0 00 00000000000000000000000000 1 99 666666666666 0 9 88888 999999999999 9 4 999999999 7 999999 7 1 22222222 0 8 0 000 22222222222222 2 8 2 0 777777777777777777777777777777777777777777777 0000 2 0 888 2222 88 0 2222 5 8 2222222222222222222222222 0 2 222222 0 555555 222 00 9 0 4444 7 77 1 0 77777 77 99 1111 6 0 0 1111111 33333 88888 7 0 0 000 0 5555555 2 0 44 2 99 0 00000 8 222 0 0 99999 55 0 33 1 0 0 333 99 0 22 0 0 1 2 88 2 0 4 6 99999 999 666 0 77 7 7 7 0 000 7 0 4444 4 666 0 9 3 3 00000000000 0 777 22 22 7 3333 55555 7 0 000 00 88 7 2 0 7 0 0 3 2 0 0 0 7 33 5 0 0
consensus : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCAAGAATACTACTTGACGTATTTGAATATTGTGAGAAACAAATAACCGAGGAT----AT-A-C-TTTTA-ATTNTCC--G-ATTTTGAAAAAGCTTTTGATTCTGTCGAATGGAA---TTTCNTG--TTTAA--AGCNCTA-AAAAAATTTAATTTTGG-TGAAAATTTTAT-AAAATGGATTAAA-AT-NCTAT-A-TA-TAA--CAA-CT--TTC----TTCANA--TTAAAAAAT----AATGGG--TGGATNTCNAAAACA----CGTAAAAT---G-A--TCGCGTGGAATTAGA---------CAAGGCTGTCC-----TATCTCNGCGATGATTTATATTTCTTTTCG-TGTTAGAAATACTAGCAATTCGACTGCGTCAAAATAATGACGAAATA--CGGT-------CA-GGT-AT-ATACCAA---TG---AAGAA-TAAAAA-CG-TACAACACGCNGACGATT-T-AACATTA-CTGT--TAAAAGATA-TAA--CGTCTATGAAA-A--AGCGATT----GCT---AATGAAANCAATA----AATTTNGT-----GAATA-CGCANGGTCTAAAACTTAATCAT-GANAAAACCG--AATGTATNCTTCTT----GGANGTTTAA--AAG----ATAG-TNTC-----GAAGA-A---ATTN-G--TGGTA-TA-AAA---GT-AACTAAT--AAAG-CG-GTTAAATGCCTAGGNGTA-----TATTT--AGGNCATGATANAGACGAA-T--GT-TATAAC-AAAAATTGGACG-A-AAANT-TATAA-CGANATGGAAAAAA-TNTTTGA-GTCGTGGAAAAAGAGAAAA--TTAACTNTATTCGGAAAAN-C-TTGTA-T-ATAAA-C-CNCCTGCNATTT-CAAAATTA-A-TNT---A-TGCATCCT-CAATCTTACN-TATNCCTGATGAAAATTT-CATAAAAAGTAT-AAACAAACTTATTTTTAATTTTATTTGG---AACAAAANTGATTAGGATTAAAAGGAATACTTTGATTGGNTCNAAT-A--NCA-GAAGGNGGTATTG-GTGG-TTGTCAGACGTATNTTCA-AAANTNAAAGCTATTAAANCNTCNTGGGTACAAAGAATCTGTAACGAAGGGGTTATTAANAGNTTTTG
Reference ( family-2599 ) : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCAAGAATACTACTTGACGTATTTGAATATTGTGAGAAACAAATAACCGAGGAT----AT-A-C-TTTTA-ATTNTCC--G-ATTTTGAAAAAGCTTTTGATTCTGTCGAATGGAA---TTTCNTG--TTTAA--AGCNCTA-AAAAAATTTAATTTTGG-TGAAAATTTTAT-AAAATGGATTAAA-AT-NCTAT-A-TA-TAA--CAA-CT--TTC----TTCAAA--TTAAAAAAT----A-------TGGATNTCNAAAACA----CGTAAAAT---G-A--TCGCGTGGAATTAGA---------CAAGGCTGTCC-----TATCTCNGCGATGATTTATATTTNTTTTCG-TGTTAGAAATACTAGCAATTCGACTGCGTCAAAATAATGACGAAATA--CGGT-------CA-GGT-AT-ATACCAA---TG---AAGAA-TAAAAA-CG-TACAACACGCNGACGATT-T-AACATTA-CTGT--TAAAAGATA-TAA--CGTCTATGAAA-A--AGCGATT----GCT---AATGAAANCAATA----AATTTNGT-----GAATA-CGCANGGTCTAAAACTTAATCAT-GANAAAACCG--AATGTATNCTTCTT----GGANGTTTAA--AAG----ATAG-TNTC-----GAAGA-A---ATTN-G--TGGTA-TA-AAA---GT-AACTAAT--AAAG-CG-GTTAAATGCCTAGGNGTA-----TATTT--AGGNCATGATANAGACGAA-T--GT-TATAAC-AAAAATTGGACG-A-AAANT-TATAA-CGANATGGAAAAAA-TNTTTGA-GTCGTGGAAAAAGAGAAAA--TTAACTNTATTCGGAAAAN-C-TTGTA-T-ATAAA-C-CNCCTGCNATTT-CAAAATTA-A-TNT---A-TGCATCCT-CAATCTTACN-TATNCCTGATGAAAATTT-CATAAAAAGTAT-AAACAAACTTATTTTTAATTTTATTTGG---AACAAAANTGATTAGGATTAAAAGGAATACTTTGATTGGNTCNAAT-A--NCA-GAAGGNGGTATTG-GTGGTTTGTCCGACGTATNTTCA-AAANTNAAAGCTATTAAANCNTCNTGGGTACAAAGAATCTGTAACGAAGGGGTTATTAANAGNTTTTG
gi|1 : CAAGATGGCTACTTGATGTTTTTGA------T-----ACAAATAAT-GAGGGT----AT-A-C-TTTTA-AT-GTTA--G-ATTTTGAAAAGGCGTTTGATGCTGTAGAGTGGAA---CTTTGTG--TTTAA--GGTGTTG-AAAAATTTTAAATTTGG-TGAAAATTTTAT-AACATGGATTAAA-AT-ATTAT-A-CACTAA--CA--CT--TTC----TTTAAA--TTAAAGAAC-------------GGATTTC--AGTCA----TGTAGAAT---GTA--T---GTGGAAT-AGA---------CAGGGATGTCC-----TCTTTCCGCTAT--TTTATATTTATTT--G-TGT--GAGATACTAGC--TTTGA--GTAT-AAAACAA-GAC-AAATA--CAAT-------TAAGGT-ATTATACCAAATATGTTCAAGAAATAAAAAACA-TTCAGCACGCTGATGATC-T-AACATTAACTGT--TAAAAGATA-TAA--C-TTTATGAAG-ACAAGCGATTTGGCGTT---ACT---AGCAA-A----AGTTTTGTTCAGCGAAT---GCAGGGTCCAAA--TTAATTAT-ACTAAAACTG--AATGTATCCTTCTT----CGACGTCTAA--AGA----ATAG-TGTC-----AAAGA-A---ATTA-G--TGGCG-TA-AAA---AC-GACTAAT--AAAG-CA-GTAAAATGTTTAGGAATA-----TACTT--CGGTCATGATACAATTGAT-T--GT-TACGAT-AAAAATTGGATG-A-AAACT-TATCA-TGACATGGAAAAAA-TGTTCGA-GTCATGGAAGAAGAGGCGA--CTGACTTTATTTGGCAAAA-C-TTGTATT-ATAAATT-CTCCTGCGATTT-CAAACTTT-A-TTT---A-TGTTGCCT-CAATTTTACC-TATTCCTGATGAAAATCT-TTTGAAAAATATAAAACGTAC-TATTTTTAATTTTCTTTGG---AATAAGACTGA-CAGGATTAAAAGGAATACTTTGATTGG---CAAT-GTTTCA-GAGGGAGGTATTG-GTG--TTGT-AGATATATATTTA-AAAATTAAAGCTATTAAAGCCTCCTGGATACAAAGAATCAGTAACAAAGGGGTTA-TAAAAGTTTTTG
gi|10 : catatataaagggtaggattattggtgaaaatgATAC--CTAGACATATTTGAATATTGTGAGAAACAA-TAACCAAAGAT----A--A-C-TTTTA-ATTATCC--A-ATTTTGAGAAAGCTTTTGATTCTGTCGAAGGAAA---TTTCCTC--TTTAAACAGCTTTA-AGAAAATTCAATTTTGGATAAGAATTTT----AAATGGATCAAATAT-TCTATAA-TA-TCC--CTA-AT--TT-----TTCGCA--TAAAAAAATATGGA-------TGGATCTCTAAAACA----CTTAAAAT---G-ACCTCGCGTGGAATTAGA---------CAAGGCTGTCC-----TATCTC-GCGt
gi|11 : attaaaggcgatacatcggagaaaaatgctcgtttgATAC--CTAGACATATTTGAATATTGTGAGAAACAA-TAACCAAAGAT----A--A-C-TTTTA-ATTATCC--A-ATTTTGAGAAAGCTTTTGATTCTGTCGAAGGAAA---TTTCCTC--TTTAAACAGCTTTA-AGAAAATTCAATTTTGGATAAGAATTTT----AAATGGATCAAATAT-TCTATAA-TA-TCC--CTA-AT--TT-----TTCGCA--TAAAAAAATATGGA-------TGGATCTCTAAAACA----CTTAAAAT---G-ACCTCGCGTGGAATTAGA---------CAAGGCTGTCC-----TATCTC-GCG
gi|13 : attaaaggcgatacatcggagaaaaatgctcgtttgAAGAATCATCCTTGA----TTTAA---TTGTGAAATTCAAATGACCC-TCAT----AT---C-TTGTT-ATTCTGT--G-ACTTTGAAAA-GTTCTTGA--CTGTAGAATGAGAGGTTTTTTTAAATTTAA--AACACTG-ACAAAATTTAATTATAG-TGAAAAATTT----AGATGGATTAAA-AT-
gi|14 : gatattggatttagtgtAG-TTT------GAAGA-A---CTTT-T--TGGTA-TT-GAA---GT-AACAAAT--AGAG-CG-ACTAAATGTCTA--TGTA-----TCTTTCTACGCCATGATAAAGAAGAA-T--GT-TATATC-AAAAATTGGATG-A-AAATA-TACAA-CGAAATGGAAA
gi|15 : TAAAAAAT----AATGGA--TGGATATCCAAAACA----TGTTCAAT---G-A---AAAGAGGAATTAGA---------TAAGGCTGTCC-----AATTTCAGCGATAATT----TTTCTTTTCG-TTGTAGAAATAt
gi|16 : ccctatattccgcaTTTAATTTTGG-TGATAATTTTAT-AAAGTGGATAAAT-AT-ACTAT-A-TA--AA--GAATCT--ATC----TTTAGA--TTAAAAAAT----AATGGG--TGGATGTCAAAAACA----AGTAAAatgtca
gi|2 : -TTTTACATTTTTG--GGATTTTCAAAAAGCTTTTGATTCAGTCAAATGGAA---CTTTATG--TTTGA--AACCTTA-AAGCGATTTAACTTTGG-AGAAAACTTTTT-GCAATGGATTCCA-AT-ACTAT-A-TA--AA--CAA-CCAATT-----TTTAAG--CTAAAAAAT----AATGGG--TGGATTTCCAAAACG----TG--------------TCACATGGAA--AGAAGCATACGGCAGGGCTGCCC-----GATATCTTCGATG----ATATTCCTCTTCG-TTGCAGAAATCCTATCAA----------TCAAAATAATGcatagaa
gi|2 : gaattacgacggaGGCA-TA-AAG---GTTAACCGAG--ACTG-CA--TTAAAGTCTTGGGAATT-----TATAT--AGATCATGATATAGAGAAA-T--GTATAGAAA-AAAAATGGGGAA-ACAAAAT-TA-AA--GAACTCGAGAGAC-TCTTTGA-ATCATGGAAAAAAAGAAAA--TTAAGTATTTTCGGAAAAA-C-GTGTA-TCATAAA-CAATTTTGCTATAT-TAAAATTA-A-TAT---A-CA-ATCTTACACTCCTACC-TTACCCTAGTGCTGATAT-TATCAAAAACAT-AAATAGATTGATTTTCAATTTCATTTGG---AACAAAAGGGA-TAGAATAAAGTGAAAAACTTTAAAAGGGGCCACTAA--GCA-G--GGTGGCAT---ATGGGTTAT-AGACGTAGAGTCA-AAAGCAAAAGCAATAAAATGTTCCTGGATAtctaaccgtgagattctgtgatttaaaacgtcaaagatgtccacagacataaacttgatacagcacgccgatgttgctacgctcgcactacgcgacgaaaaagcattacaactagcaatcacctgcataaagaacttcggaaacatttctggattaattttaaatgtaaaccaaacagaatgcttgttattaggctctctgaaagattcagtccgtgttttacacggcataaaggttaaccgagactgcattaaagtcttgggaatttatatagatcatgatatagagaaatgtatagaaaaaaaatggggaaacaaaattaaagaactcgagagactctttgaatcatggaaaaaaagaaaattaagtattttcggaaaaacgtgtatcataaacaattttgctatattaaaattaatatacaatcttacactcctaccttaccctagtgctgatattatcaaaaacataaatagattgattttcaatttcatttggaacaaaagggatagaataaagtgaaaaactttaaaaggggccactaagcagggtggcatatgggttatagacgtagagtcaaaagcaaaagcaataaaatgttcctggata
gi|3 : gaattacgacggattttacatttttgggattttcaaaaagcttttgattcagtcaaatggaactttatgtttgaaaccttaaagcgatttaactttggagaaaactttttgcaatggattccaatactatataaacaaccaatttttaagctaaaaaataatgggtggatttccaaaacgtgtcacatggaaagaagcatacggcagggctgcccgatatcttcgatgatattcctcttcgttgcagaaatcctatcaatcaaaataatgtctaaccgtgagattctgtgatttaaaacgtcaaagatgtccacagacataaacttgatacagcacgccgatgttgctacgctcgcactacgcgacgaaaaagcattacaactagcaatcacctgcataaagaacttcggaaacatttctggattaattttaaatgtaaaccaaacagaatgcttgttattaggctctctgaaagattcagtccgtgttttacacCAAGAATACTACTTGAAATATTTGAATATTGTG-----CAATTAATC-AGGATTTTGAT-GGCATTTTA-CTTTTCCTAG-ATTTTGAAAATGCTTTTGATTCTGTTGAATATGA---TTTCATG--TACAA--AACTCTAGAAAAAATTCGATTTTGG-TGAAAATTTTATCAAAATGA--TAAA-ATCACTAT-ATTC-CAAGCCAA-TT--TTCAA--TTCAAGTTTTAAAAAATC---ACAACGGTTGGGTGTCTAAATCATGTGCATGAAATGCAG-A--TCAAGAGGCATTAGA---------CAAAGATGTCCTGTGTTATCACTACTACA---TGTATTTATTTTCA-TGTTAGAAATACTAGCAGTTCCACTG---AAAAATAATGACGAAATACTCGGTCTATCGCCA-GGTGATGATACTAA---TG---AAAAATTAAAAATCG-TGCAACATGCAGATGATTGTAAATATT---TGT--TAAAAGATAGTAATTCGT---TGAAA-A-----------------------AAAACAATAGGTGGATTTAGT------AATGTCGCA-GGCCCGAAATTGAATTTG-GATAAAACAG--AATG----CTTATTGACAGGAAGTCTTATTGAG----AT-G-TATCTAAATGAAGA-ATATATTT-G--TGGTGTTA-AAA---TT-GA-TACA--AAAA-TACGTAAAATCAATAGGTGCA-----TATTT--AGGACATGATAAGGAT--A-TTAGC-TATGAA-ATGAACTGGACA-A-
gi|4 : tcatatgaataaaggttctacatAT----ATTA-C-TTTTA-CT----C--G-ATTTTCAAAGAGCATTTGATTCCGTCGAATGGTC---TTTTATG---ATAA--AGCACTC-AAGTTCTTTAGGTTTGG-ACAAAAATTCAC--CAATGGATTCAA-AT-TTTGT-A-T--TAA--AAG-C-----CAGAATTTAGA--CTAAAAAAT----AATAAT--TGACTGTCAAAAACA----TGTAAAGT---G-A---GGCGGGGAATTCGT---------CAAGGATGTTC-----GATATCAGCGATGATT----TTTCTATTTGTTGTT-GAAGTATTGGCAATTAGATTACGTCGA---AATGACACAAT------T-------CATGGT----------------------AG-TAAAAA-CATTACAACATGCTGACGATT-C-TACATTA-CCTT--TGAGGGACA-TTA--CGTCTGTAAAATC--AGCGAT-------T---AATGAAATCAATA----CTTTCAGC-----AAATA-CTC-TGGTATGAAATTAAACCTT-TCAAAAACAG--AGCGCATTTTATTA----GGACCATTAA--AAGGCCAACAGATACA-----GACGG-C---ATTA-C--T-GTA-TA--------T-GAC---------G-CG-------TGCGTAAAGGTAATAGGTATTC----GGCATGATAAAGATTTA-T--GT-TTTAAA-AATAATTGGACC-A-AAAAG-ATTGA-TGATATAGAAAAGC-TGTTTTA-ATCGTGTAAAAA-ATAAAG--TTAA
gi|5 : aAAGGTTTAAAACTTAATCAT-AAGTAAACCGGAAATA-ATACTTCTG----GGATCTTTAA--AAG----GAAG-TTTT-----TGATATA---ATTA-GAAGGGAA-TA-AAA---GT-AA--AATGAAAAGACA-GTTAAATGCCTGGGTGTA-----T-TTT--AGGACATGAATGAAACAAGGT--GT-TATAACTCAGAATTGGATG-A-AAGGTATATAA-TAATATGGGAAAAACTTTTTGATGTCGTGGAAAAAGAGAAAAGCTTTACTATATTTGAAAAAT-G-TTGTA-T-ATAAA---CACCTGCT-TTT-CAAAATTA-A-TTTTACA-TGCATCCT--A--CTTA-A-TATGCCAAATGAAAAGTTACATAAAAAGTAT-TAACAAACTTATTTTTAACTTTATTTGG---AACAAAACTGATTAGAATTAAAA-GAATACATTGATTGGTTCTAAT-A--ACA-AAATGTGGTATTGAGTGGTTTGTCCGATGTGTTTTCA-AAACTGAAAGCT-TTGAAACATCATGGGT
gi|6 : AAGGTTTAAAACTTAATCAT-AAGTAAACCGGAAATA-ATACTTCTG----GGATCTTTAA--AAG----GAAG-TTTT-----TGATATA---ATTA-GAAGGGAA-TA-AAA---GT-AA--AATGAAAAGACA-GTTAAATGCCTGGGTGTA-----T-TTT--AGGACATGAATGAAACAAGGT--GT-TATAACTCAGAATTGGATG-A-AAGGTATATAA-TAATATGGGAAAAACTTTTTGATGTCGTGGAAAAAGAGAAAAGCTTTACTATATTTGAAAAAT-G-TTGTA-T-ATAAA---CACCTGCT-TTT-CAAAATTA-A-TTTTACA-TGCATCCT--A--CTTA-A-TATGCCAAATGAAAAGTTACATAAAAAGTAT-TAACAAACTTATTTTTAACTTTATTTGG---AACAAAACTGATTAGAATTAAAA-GAATACATTGATTGGTTCTAAT-A--ACA-AAATGTGGTATTGAGTGGTTTGTCCGATGTGTTTTCA-AAACTGAAAGCT-TTGAAACATCATGGGT
gi|7 : AAATTAATTAT-GCTAAAACTG--AATGTATCCTTCTT----GGAAGTTTAA--AGA----ATAG-TGTC-----AAAGA-A---ATTC-G--TGGCA-TA-AAA---AC-GACTGGT--AAAG-CA-ATAAAATGTTTAGGAATA-----TACTT--CGGTCATGATACAATTGAT-T--GT-TACCAT-AAAAATTGGATG-A-AAACT-TATCA-TGACATGGAAAAAA-TGTTTGA-GACATGAAAGAAAAGGCAA--CTAACTTTATTTGGCATAA-C-TTGTATT-ATAAATT-CTCTTGCGTTTT-CTAAATTT-A-TTT---A-TGTTGCCT-CAATTTTACC-TATTCCTGATGAAAATCT-TTTGAAAAATAT-A---AAAC------------------GG---AATAAGAATGA-CAGGATTAAAAGGAATACTTTGATTGGCT-AAAT-GT-TTA-GAGGGATGTA--G-GTG--TTGGTAGATATATATTTA-AAAATTAAAGCTATT-AAGCCTCTTGGATACAAAGAAT-TATAGTCAAAGGGTTATTAATAGATTTTG
gi|8 : -TAAAAG-TG-TACAACGCTCAGACGATT-T-ATCA--G-CTGCGGTAAAAGATG-AAA--TATCTATGAAA-A--A-----T----GCCCTAAATGAAATCAATA----AATTTTGT-----GAATA-TGCTCGTTCTAAAA-TTAAT-ATCGACAAAACCG--AATGTATTTTGCTT----GGAAGGTTGC--AAA----ATAA-GTTT-----GAAGA-A---CTTT-T--TAGTA-TT-ACA---GT-AACAAAT--AGAG-CG-ACTAAATGTCTAGGTATC-----TTTCT--AGGTCATGATAAAGAAGAA-T--GT-TATATC-AAAAATTGGATG-A-AAATA-TACAA-CGAAATGGAAAAAT-TGTTTGA-ATCCTGGAAAAGAAGAAAA--TTAACACTTTTTGGTAAAG-C-ATGCA-TAATAA----CACTTGCCATTT-CAAAATAA-G-TAT---A-TGTATCTT-CAATATTGTG-TTTTCCTGATAAAGA
gi|9 : gaaat-A---ATTATA--TGGTA-TACAAATTTAT-AACTAAT--GCAC-CG-ATTAAATGTTTAGGAATA-----TATAT--AGGGCATGCTATTAACCAA-T--GC-TACATT-AAAGATTGGACGGA-AAAAT-GATAAACTAGA--GAGAAAA--CTTACA-AT-ATGGAACACGAGAAAA--TTGACTTTATACGGAAAATGCACTGTA---ATGAA-C-ACTTTGGCATTGACACAATTATACTAT---AGTGCATAT----ATTTTGTAATATCCCGGA--AAAATTT-CATAAACAGT---------------TTTCAATTTTCTTTGGGGCAACAGAAA--AC--GGATAAAAAGAAATACTTTGATTGGA--AAAC-A--AGAAGAAGGAGGGATAG-GCA--TTGTT-GACAT-TGTTTGTAAATTAAAAGCGCTTAAATCGGCATGGGTAAAACGAATCTGTAATGAA
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|12 ): AGAAAGCTTAATGCTAATAAAATAATGTGTAATCGTGAGATTCTGGGATTTAAAACGTCAAAGATGTTCGCAGACATAACATTGATACAACATGCTGACGATACTACGCTCGCATTACACGACCAAAAAGCATTACAATTAGCAATCACTTGTATAAAGATCTGAATTAATTCTAACTGTTAACAAATACATACTGTGTTA
Alignments
lowQualScore : 111111111111111111111111111111111111111111111 1111111111111111111111111
lowQualScore : 11 11 111 11111 1 111 222222222 111111111 111 11 1 2222 1 55555555555555555555555555 1111 11111 222222222222 222222222 111111 1 44444444 111 55555555555555 1 444444444444444444444444444444444444444444444 2222 111 1111 11 1 1111 0000000000000000000000000 222222 333333 111 11 11 1 11111 1111 1111111 11111 11111 1111111 11 11111 11111 11 11 1 11 222 22222 222 1111 111 1 11111111111 111 22 2222 11111 333333 11 1 1
lowQualScore : 66 1 22 1 111 66666 5 333 777777777 5 5 111111111 3 0 000 1 77 55 1 5 0 7777 0 66 22222222222222222222222222 1 77 8888 5 1 5 11111 999999999999 1 1 222222222 0 555555 1 2 33333333 0 8 000 11111111111111 3 0 3 2 555555555555555555555555555555555555555555555 2222 1 1 444 7777 33 0 4444 6 0 7777777777777777777777777 1 3 333333 1 111111 777 11 8 4 8888 1 55 4 3 33333 11 77 2222 0 5 1 8888888 00000 77777 0 4 4 777 4 5555555 1 8 00 1 11 1 00000 5 666 1 1 11111 55 4 00 2 4 4 999 88 1 00 1 0 1 2 33 1 1 1 1 99999 000 77777 99 5 5 5 1 000 5 4 6666 0 555 1 1 0 3 99999999999 3 111 44 22 6 2222 99999 6 1 6 000000 99 0 4 1 6 1 1 1 4 1 1 1 6 44 5 1 1
lowQualScore : .. . .. . ... ..... . ... ......... . . ......... . . ... . .. .. . . . .... . .. .......................... . .. .... . . . ..... ............ . . ......... . ...... . . ........ . . ... .............. . . . . ............................................. .... . . ... .... .. . .... . . ......................... . . ...... . ...... ... .. . . .... . .. . . ..... .. .. .... . . . ....... ..... ..... . . . ... . ....... . . .. . .. . ..... . ... . . ..... .. . .. . . . ... .. . .. . . . . .. . . . . ..... ... ..... .. . . . . ... . . .... . ... . . . . ........... . ... .. .. . .... ..... . . . ...... .. . . . . . . . . . . . . .. . . .
lowQualScore : 00 4 88 0 888 22222 8 666 555555555 7 7 777777777 9 4 000 0 99 77 0 7 0 5555 0 00 00000000000000000000000000 0 99 1111 4 0 9 88888 999999999999 9 4 999999999 7 999999 7 1 22222222 8 0 000 22222222222222 2 8 2 0 777777777777777777777777777777777777777777777 0000 2 0 888 2222 88 0 2222 5 8 2222222222222222222222222 0 2 222222 0 555555 222 00 9 0 4444 7 77 1 0 77777 77 99 1111 6 0 0 1111111 33333 88888 7 0 0 000 0 5555555 2 0 44 2 99 0 00000 8 222 0 0 99999 55 0 33 1 0 0 333 99 0 22 0 0 1 2 88 2 0 4 6 99999 999 77777 77 7 7 7 0 000 7 0 4444 4 666 0 9 3 3 00000000000 0 777 22 22 7 3333 55555 7 0 7 222222 22 7 2 0 7 0 0 3 2 0 0 0 7 33 5 0 0
consensus : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCAAGAATACTACTTGACGTATTTGAATATTGTGAGAAACAAATAACCGAGGAT----AT-A-C-TTTTA-ATTNTCC--G-ATTTTGAAAAAGCTTTTGATTCTGTCGAATGGAA---TTTCNTG--TTTAA--AGCNCTA-AAAAAATTTAATTTTGG-TGAAAATTTTAT-AAAATGGATTAAA-AT-NCTAT-A-TA-TAA--CAA-CT--TTC----TTCANA--TTAAAAAAT---AATGGNTGGATNTCNAAAACA----CGTAAAAT---G-A--TCGCGTGGAATTAGA---------CAAGGCTGTCC-----TATCTCNGCGATGATTTATATTTCTTTTCG-TGTTAGAAATACTAGCAATTCGACTGCGTCAAAATAATGACGAAATA--CGGT-------CA-GGT-AT-ATACCAA---TG---AAGAA-TAAAAA-CG-TACAACACGCNGACGATT-T-AACATTA-CTGT--TAAAAGATA-TAA--CGTCTATGAAA-A--AGCGATT----GCT---AATGAAANCAATA----AATTTNGT-----GAATA-CGCANGGTCTAAAACTTAATCAT-GANAAAACCG--AATGTATNCTTCTT----GGANGTTTAA--AAG----ATAG-TNTC-----GAAGA-A---ATTN-G--TGGTA-TA-AAA---GT-AACTAAT--AAAG-CG-GTTAAATGCCTAGGNGTA-----TATTT--AGGNCATGATANAGACGAA-T--GT-TATAAC-AAAAATTGGACG-A-AAANT-TATAA-CGANATGGAAAAAA-TNTTTGA-GTCGTGGAAAAAGAGAAAA--TTAACTNTATTCGGAAAAN-C-TTGTA-T-ATAAA-C-CNCCTGCNATTT-CAAAATTA-A-TNT---A-TGCATCCT-CAATCTTACN-TATNCCTGATGAAAATTT-CATAAAAAGTAT-AAACAAACTTATTTTTAATTTTATTTGG---AACAAAANTGATTAGGATTAAAAGGAATACTTTGATTGGNTCNAAT-A--NCA-GAAGGNGGTAT-TG-GTGG-TTGTCAGACGTATNTTCA-AAANTNAAAGCTATTAAANCNTCNTGGGTACAAAGAATCTGTAACGAAGGGGTTATTAANAGNTTTTG
Reference ( family-2599 ) : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCAAGAATACTACTTGACGTATTTGAATATTGTGAGAAACAAATAACCGAGGAT----AT-A-C-TTTTA-ATTNTCC--G-ATTTTGAAAAAGCTTTTGATTCTGTCGAATGGAA---TTTCNTG--TTTAA--AGCNCTA-AAAAAATTTAATTTTGG-TGAAAATTTTAT-AAAATGGATTAAA-AT-NCTAT-A-TA-TAA--CAA-CT--TTC----TTCANA--TTAAAAAAT---AATGGGTGGATNTCNAAAACA----CGTAAAAT---G-A--TCGCGTGGAATTAGA---------CAAGGCTGTCC-----TATCTCNGCGATGATTTATATTTCTTTTCG-TGTTAGAAATACTAGCAATTCGACTGCGTCAAAATAATGACGAAATA--CGGT-------CA-GGT-AT-ATACCAA---TG---AAGAA-TAAAAA-CG-TACAACACGCNGACGATT-T-AACATTA-CTGT--TAAAAGATA-TAA--CGTCTATGAAA-A--AGCGATT----GCT---AATGAAANCAATA----AATTTNGT-----GAATA-CGCANGGTCTAAAACTTAATCAT-GANAAAACCG--AATGTATNCTTCTT----GGANGTTTAA--AAG----ATAG-TNTC-----GAAGA-A---ATTN-G--TGGTA-TA-AAA---GT-AACTAAT--AAAG-CG-GTTAAATGCCTAGGNGTA-----TATTT--AGGNCATGATANAGACGAA-T--GT-TATAAC-AAAAATTGGACG-A-AAANT-TATAA-CGANATGGAAAAAA-TNTTTGA-GTCGTGGAAAAAGAGAAAA--TTAACTNTATTCGGAAAAN-C-TTGTA-T-ATAAA-C-CNCCTGCNATTT-CAAAATTA-A-TNT---A-TGCATCCT-CAATCTTACN-TATNCCTGATGAAAATTT-CATAAAAAGTAT-AAACAAACTTATTTTTAATTTTATTTGG---AACAAAANTGATTAGGATTAAAAGGAATACTTTGATTGGNTCNAAT-A--NCA-GAAGGNGGTAT-TG-GTGG-TTGTCAGACGTATNTTCA-AAANTNAAAGCTATTAAANCNTCNTGGGTACAAAGAATCTGTAACGAAGGGGTTATTAANAGNTTTTG
gi|1 : CAAGATGGCTACTTGATGTTTTTGA------T-----ACAAATAAT-GAGGGT----AT-A-C-TTTTA-AT-GTTA--G-ATTTTGAAAAGGCGTTTGATGCTGTAGAGTGGAA---CTTTGTG--TTTAA--GGTGTTG-AAAAATTTTAAATTTGG-TGAAAATTTTAT-AACATGGATTAAA-AT-ATTAT-A-CACTAA--CA--CT--TTC----TTTAAA--TTAAAGAAC----------GGATTTC--AGTCA----TGTAGAAT---GTA--T---GTGGAAT-AGA---------CAGGGATGTCC-----TCTTTCCGCTAT--TTTATATTTATTT--G-TGT--GAGATACTAGC--TTTGA--GTAT-AAAACAA-GAC-AAATA--CAAT-------TAAGGT-ATTATACCAAATATGTTCAAGAAATAAAAAACA-TTCAGCACGCTGATGATC-T-AACATTAACTGT--TAAAAGATA-TAA--C-TTTATGAAG-ACAAGCGATTTGGCGTT---ACT---AGCAA-A----AGTTTTGTTCAGCGAAT---GCAGGGTCCAAA--TTAATTAT-ACTAAAACTG--AATGTATCCTTCTT----CGACGTCTAA--AGA----ATAG-TGTC-----AAAGA-A---ATTA-G--TGGCG-TA-AAA---AC-GACTAAT--AAAG-CA-GTAAAATGTTTAGGAATA-----TACTT--CGGTCATGATACAATTGAT-T--GT-TACGAT-AAAAATTGGATG-A-AAACT-TATCA-TGACATGGAAAAAA-TGTTCGA-GTCATGGAAGAAGAGGCGA--CTGACTTTATTTGGCAAAA-C-TTGTATT-ATAAATT-CTCCTGCGATTT-CAAACTTT-A-TTT---A-TGTTGCCT-CAATTTTACC-TATTCCTGATGAAAATCT-TTTGAAAAATATAAAACGTAC-TATTTTTAATTTTCTTTGG---AATAAGACTGA-CAGGATTAAAAGGAATACTTTGATTGG---CAAT-GTTTCA-GAGGGAGGTAT-TG-GT-G-TTGT-AGATATATATTTA-AAAATTAAAGCTATTAAAGCCTCCTGGATACAAAGAATCAGTAACAAAGGGGTTA-TAAAAGTTTTTG
gi|10 : catatataaagggtaggattattggtgaaaatgATAC--CTAGACATATTTGAATATTGTGAGAAACAA-TAACCAAAGAT----A--A-C-TTTTA-ATTATCC--A-ATTTTGAGAAAGCTTTTGATTCTGTCGAAGGAAA---TTTCCTC--TTTAAACAGCTTTA-AGAAAATTCAATTTTGGATAAGAATTTT----AAATGGATCAAATAT-TCTATAA-TA-TCC--CTA-AT--TT-----TTCGCA--TAAAAAAAT----ATGGATGGATCTCTAAAACA----CTTAAAAT---G-ACCTCGCGTGGAATTAGA---------CAAGGCTGTCC-----TATCTC-GCGt
gi|11 : attaaaggcgatacatcggagaaaaatgctcgtttgATAC--CTAGACATATTTGAATATTGTGAGAAACAA-TAACCAAAGAT----A--A-C-TTTTA-ATTATCC--A-ATTTTGAGAAAGCTTTTGATTCTGTCGAAGGAAA---TTTCCTC--TTTAAACAGCTTTA-AGAAAATTCAATTTTGGATAAGAATTTT----AAATGGATCAAATAT-TCTATAA-TA-TCC--CTA-AT--TT-----TTCGCA--TAAAAAAAT----ATGGATGGATCTCTAAAACA----CTTAAAAT---G-ACCTCGCGTGGAATTAGA---------CAAGGCTGTCC-----TATCTC-GCG
gi|13 : attaaaggcgatacatcggagaaaaatgctcgtttgAAGAATCATCCTTGA----TTTAA---TTGTGAAATTCAAATGACCC-TCAT----AT---C-TTGTT-ATTCTGT--G-ACTTTGAAAA-GTTCTTGA--CTGTAGAATGAGAGGTTTTTTTAAATTTAA--AACACTG-ACAAAATTTAATTATAG-TGAAAAATTT----AGATGGATTAAA-AT-
gi|14 : gatattggatttagtgtAG-TTT------GAAGA-A---CTTT-T--TGGTA-TT-GAA---GT-AACAAAT--AGAG-CG-ACTAAATGTCTA--TGTA-----TCTTTCTACGCCATGATAAAGAAGAA-T--GT-TATATC-AAAAATTGGATG-A-AAATA-TACAA-CGAAATGGAAA
gi|15 : TAAAAAAT---AATGGATGGATATCCAAAACA----TGTTCAAT---G-A---AAAGAGGAATTAGA---------TAAGGCTGTCC-----AATTTCAGCGATAATT----TTTCTTTTCG-TTGTAGAAATAt
gi|16 : ccctatattccgcaTTTAATTTTGG-TGATAATTTTAT-AAAGTGGATAAAT-AT-ACTAT-A-TA--AA--GAATCT--ATC----TTTAGA--TTAAAAAAT---AATGGGTGGATGTCAAAAACA----AGTAAAatgtca
gi|2 : -TTTTACATTTTTG--GGATTTTCAAAAAGCTTTTGATTCAGTCAAATGGAA---CTTTATG--TTTGA--AACCTTA-AAGCGATTTAACTTTGG-AGAAAACTTTTT-GCAATGGATTCCA-AT-ACTAT-A-TA--AA--CAA-CCAATT-----TTTAAG--CTAAAAAAT---AATGGGTGGATTTCCAAAACG----TG--------------TCACATGGAA--AGAAGCATACGGCAGGGCTGCCC-----GATATCTTCGATG----ATATTCCTCTTCG-TTGCAGAAATCCTATCAA----------TCAAAATAATGcatagaa
gi|2 : gaattacgacggaGGCA-TA-AAG---GTTAACCGAG--ACTG-CA--TTAAAGTCTTGGGAATT-----TATAT--AGATCATGATATAGAGAAA-T--GTATAGAAA-AAAAATGGGGAA-ACAAAAT-TA-AA--GAACTCGAGAGAC-TCTTTGA-ATCATGGAAAAAAAGAAAA--TTAAGTATTTTCGGAAAAA-C-GTGTA-TCATAAA-CAATTTTGCTATAT-TAAAATTA-A-TAT---A-CA-ATCTTACACTCCTACC-TTACCCTAGTGCTGATAT-TATCAAAAACAT-AAATAGATTGATTTTCAATTTCATTTGG---AACAAAAGGGA-TAGAATAAAGTGAAAAACTTTAAAAGGGGCCACTAA--GCA-G--GGTGGCATATG---GG-TTAT-AGACGTAGAGTCA-AAAGCAAAAGCAATAAAATGTTCCTGGATAtctaaccgtgagattctgtgatttaaaacgtcaaagatgtccacagacataaacttgatacagcacgccgatgttgctacgctcgcactacgcgacgaaaaagcattacaactagcaatcacctgcataaagaacttcggaaacatttctggattaattttaaatgtaaaccaaacagaatgcttgttattaggctctctgaaagattcagtccgtgttttacacggcataaaggttaaccgagactgcattaaagtcttgggaatttatatagatcatgatatagagaaatgtatagaaaaaaaatggggaaacaaaattaaagaactcgagagactctttgaatcatggaaaaaaagaaaattaagtattttcggaaaaacgtgtatcataaacaattttgctatattaaaattaatatacaatcttacactcctaccttaccctagtgctgatattatcaaaaacataaatagattgattttcaatttcatttggaacaaaagggatagaataaagtgaaaaactttaaaaggggccactaagcagggtggcatatgggttatagacgtagagtcaaaagcaaaagcaataaaatgttcctggata
gi|3 : gaattacgacggattttacatttttgggattttcaaaaagcttttgattcagtcaaatggaactttatgtttgaaaccttaaagcgatttaactttggagaaaactttttgcaatggattccaatactatataaacaaccaatttttaagctaaaaaataatgggtggatttccaaaacgtgtcacatggaaagaagcatacggcagggctgcccgatatcttcgatgatattcctcttcgttgcagaaatcctatcaatcaaaataatgtctaaccgtgagattctgtgatttaaaacgtcaaagatgtccacagacataaacttgatacagcacgccgatgttgctacgctcgcactacgcgacgaaaaagcattacaactagcaatcacctgcataaagaacttcggaaacatttctggattaattttaaatgtaaaccaaacagaatgcttgttattaggctctctgaaagattcagtccgtgttttacacCAAGAATACTACTTGAAATATTTGAATATTGTG-----CAATTAATC-AGGATTTTGAT-GGCATTTTA-CTTTTCCTAG-ATTTTGAAAATGCTTTTGATTCTGTTGAATATGA---TTTCATG--TACAA--AACTCTAGAAAAAATTCGATTTTGG-TGAAAATTTTATCAAAATGA--TAAA-ATCACTAT-ATTC-CAAGCCAA-TT--TTCAA--TTCAAGTTTTAAAAAATCACAACGGTTGGGTGTCTAAATCATGTGCATGAAATGCAG-A--TCAAGAGGCATTAGA---------CAAAGATGTCCTGTGTTATCACTACTACA---TGTATTTATTTTCA-TGTTAGAAATACTAGCAGTTCCACTG---AAAAATAATGACGAAATACTCGGTCTATCGCCA-GGTGATGATACTAA---TG---AAAAATTAAAAATCG-TGCAACATGCAGATGATTGTAAATATT---TGT--TAAAAGATAGTAATTCGT---TGAAA-A-----------------------AAAACAATAGGTGGATTTAGT------AATGTCGCA-GGCCCGAAATTGAATTTG-GATAAAACAG--AATG----CTTATTGACAGGAAGTCTTATTGAG----AT-G-TATCTAAATGAAGA-ATATATTT-G--TGGTGTTA-AAA---TT-GA-TACA--AAAA-TACGTAAAATCAATAGGTGCA-----TATTT--AGGACATGATAAGGAT--A-TTAGC-TATGAA-ATGAACTGGACA-A-
gi|4 : tcatatgaataaaggttctacatAT----ATTA-C-TTTTA-CT----C--G-ATTTTCAAAGAGCATTTGATTCCGTCGAATGGTC---TTTTATG---ATAA--AGCACTC-AAGTTCTTTAGGTTTGG-ACAAAAATTCAC--CAATGGATTCAA-AT-TTTGT-A-T--TAA--AAG-C-----CAGAATTTAGA--CTAAAAAAT---AATAATTGACTGTCAAAAACA----TGTAAAGT---G-A---GGCGGGGAATTCGT---------CAAGGATGTTC-----GATATCAGCGATGATT----TTTCTATTTGTTGTT-GAAGTATTGGCAATTAGATTACGTCGA---AATGACACAAT------T-------CATGGT----------------------AG-TAAAAA-CATTACAACATGCTGACGATT-C-TACATTA-CCTT--TGAGGGACA-TTA--CGTCTGTAAAATC--AGCGAT-------T---AATGAAATCAATA----CTTTCAGC-----AAATA-CTC-TGGTATGAAATTAAACCTT-TCAAAAACAG--AGCGCATTTTATTA----GGACCATTAA--AAGGCCAACAGATACA-----GACGG-C---ATTA-C--T-GTA-TA--------T-GAC---------G-CG-------TGCGTAAAGGTAATAGGTATTC----GGCATGATAAAGATTTA-T--GT-TTTAAA-AATAATTGGACC-A-AAAAG-ATTGA-TGATATAGAAAAGC-TGTTTTA-ATCGTGTAAAAA-ATAAAG--TTAA
gi|5 : aAAGGTTTAAAACTTAATCAT-AAGTAAACCGGAAATA-ATACTTCTG----GGATCTTTAA--AAG----GAAG-TTTT-----TGATATA---ATTA-GAAGGGAA-TA-AAA---GT-AA--AATGAAAAGACA-GTTAAATGCCTGGGTGTA-----T-TTT--AGGACATGAATGAAACAAGGT--GT-TATAACTCAGAATTGGATG-A-AAGGTATATAA-TAATATGGGAAAAACTTTTTGATGTCGTGGAAAAAGAGAAAAGCTTTACTATATTTGAAAAAT-G-TTGTA-T-ATAAA-C--ACCTGCT-TTT-CAAAATTA-A-TTTTACA-TGCATCCT--A--CTTA-A-TATGCCAAATGAAAAGTTACATAAAAAGTAT-TAACAAACTTATTTTTAACTTTATTTGG---AACAAAACTGATTAGAATTAAAA-GAATACATTGATTGGTTCTAAT-A--ACA-AAATGTGGTAT-TGAGTGGTTTGTCCGATGTGTTTTCA-AAACTGAAAGCT-TTGAAACATCATGGGT
gi|6 : AAGGTTTAAAACTTAATCAT-AAGTAAACCGGAAATA-ATACTTCTG----GGATCTTTAA--AAG----GAAG-TTTT-----TGATATA---ATTA-GAAGGGAA-TA-AAA---GT-AA--AATGAAAAGACA-GTTAAATGCCTGGGTGTA-----T-TTT--AGGACATGAATGAAACAAGGT--GT-TATAACTCAGAATTGGATG-A-AAGGTATATAA-TAATATGGGAAAAACTTTTTGATGTCGTGGAAAAAGAGAAAAGCTTTACTATATTTGAAAAAT-G-TTGTA-T-ATAAA-C--ACCTGCT-TTT-CAAAATTA-A-TTTTACA-TGCATCCT--A--CTTA-A-TATGCCAAATGAAAAGTTACATAAAAAGTAT-TAACAAACTTATTTTTAACTTTATTTGG---AACAAAACTGATTAGAATTAAAA-GAATACATTGATTGGTTCTAAT-A--ACA-AAATGTGGTAT-TGAGTGGTTTGTCCGATGTGTTTTCA-AAACTGAAAGCT-TTGAAACATCATGGGT
gi|7 : AAATTAATTAT-GCTAAAACTG--AATGTATCCTTCTT----GGAAGTTTAA--AGA----ATAG-TGTC-----AAAGA-A---ATTC-G--TGGCA-TA-AAA---AC-GACTGGT--AAAG-CA-ATAAAATGTTTAGGAATA-----TACTT--CGGTCATGATACAATTGAT-T--GT-TACCAT-AAAAATTGGATG-A-AAACT-TATCA-TGACATGGAAAAAA-TGTTTGA-GACATGAAAGAAAAGGCAA--CTAACTTTATTTGGCATAA-C-TTGTATT-ATAAATT-CTCTTGCGTTTT-CTAAATTT-A-TTT---A-TGTTGCCT-CAATTTTACC-TATTCCTGATGAAAATCT-TTTGAAAAATAT-A---AAAC------------------GG---AATAAGAATGA-CAGGATTAAAAGGAATACTTTGATTGGCT-AAAT-GT-TTA-GAGGGATGTA---G-GT-G-TTGGTAGATATATATTTA-AAAATTAAAGCTATT-AAGCCTCTTGGATACAAAGAAT-TATAGTCAAAGGGTTATTAATAGATTTTG
gi|8 : -TAAAAG-TG-TACAACGCTCAGACGATT-T-ATCA--G-CTGCGGTAAAAGATG-AAA--TATCTATGAAA-A--A-----T----GCCCTAAATGAAATCAATA----AATTTTGT-----GAATA-TGCTCGTTCTAAAA-TTAAT-ATCGACAAAACCG--AATGTATTTTGCTT----GGAAGGTTGC--AAA----ATAA-GTTT-----GAAGA-A---CTTT-T--TAGTA-TT-ACA---GT-AACAAAT--AGAG-CG-ACTAAATGTCTAGGTATC-----TTTCT--AGGTCATGATAAAGAAGAA-T--GT-TATATC-AAAAATTGGATG-A-AAATA-TACAA-CGAAATGGAAAAAT-TGTTTGA-ATCCTGGAAAAGAAGAAAA--TTAACACTTTTTGGTAAAG-C-ATGCA-TAATAA----CACTTGCCATTT-CAAAATAA-G-TAT---A-TGTATCTT-CAATATTGTG-TTTTCCTGATAAAGA
gi|9 : gaaat-A---ATTATA--TGGTA-TACAAATTTAT-AACTAAT--GCAC-CG-ATTAAATGTTTAGGAATA-----TATAT--AGGGCATGCTATTAACCAA-T--GC-TACATT-AAAGATTGGACGGA-AAAAT-GATAAACTAGA--GAGAAAA--CTTACA-AT-ATGGAACACGAGAAAA--TTGACTTTATACGGAAAATGCACTGTA---ATGAA-C-ACTTTGGCATTGACACAATTATACTAT---AGTGCATAT----ATTTTGTAATATCCCGGA--AAAATTT-CATAAACAGT---------------TTTCAATTTTCTTTGGGGCAACAGAAA--AC--GGATAAAAAGAAATACTTTGATTGGA--AAAC-A--AGAAGAAGGAGGGAT-AG-GCA--TTGTT-GACAT-TGTTTGTAAATTAAAAGCGCTTAAATCGGCATGGGTAAAACGAATCTGTAATGAA
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|12 ): AGAAAGCTTAATGCTAATAAAATAATGTGTAATCGTGAGATTCTGGGATTTAAAACGTCAAAGATGTTCGCAGACATAACATTGATACAACATGCTGACGATACTACGCTCGCATTACACGACCAAAAAGCATTACAATTAGCAATCACTTGTATAAAGATCTGAATTAATTCTAACTGTTAACAAATACATACTGTGTTA
Alignments
lowQualScore : 111111111111111111111111111111111111111111111 1111111111111111111111111
lowQualScore : 11 11 111 11111 1 111 222222222 111111111 111 11 1 2222 1 55555555555555555555555555 1111 11111 222222222222 222222222 111111 1 44444444 111 55555555555555 1 444444444444444444444444444444444444444444444 2222 111 1111 11 1 1111 0000000000000000000000000 222222 333333 111 11 11 1 11111 1111 1111111 11111 11111 1111111 11 11111 11111 11 11 1 11 222 22222 222 11111 111 1 11111111111 111 22 222222222222 333333 11 1 1
lowQualScore : 66 1 22 1 111 66666 5 333 777777777 5 5 111111111 3 0 000 1 77 55 1 5 0 7777 0 66 22222222222222222222222222 1 77 8888 2 1 5 11111 999999999999 1 1 222222222 0 555555 1 2 33333333 0 8 000 11111111111111 3 0 3 2 555555555555555555555555555555555555555555555 2222 1 1 444 7777 33 0 4444 6 0 7777777777777777777777777 1 3 333333 1 111111 777 11 8 4 8888 1 55 4 3 33333 11 77 2222 0 5 1 8888888 00000 77777 0 4 4 777 4 5555555 1 8 00 1 11 1 00000 5 666 1 1 11111 55 4 00 66 4 999 4 4 1 00 1 0 1 2 33 1 1 1 1 99999 000 77777 99 5 5 5 1 000 5 4 88888 0 555 1 1 0 3 1 99999999999 3 111 44 22 6 888888888888 1 6 000000 99 0 4 1 6 1 1 1 4 1 1 1 6 44 5 1 1
lowQualScore : .. . .. . ... ..... . ... ......... . . ......... . . ... . .. .. . . . .... . .. .......................... . .. .... . . . ..... ............ . . ......... . ...... . . ........ . . ... .............. . . . . ............................................. .... . . ... .... .. . .... . . ......................... . . ...... . ...... ... .. . . .... . .. . . ..... .. .. .... . . . ....... ..... ..... . . . ... . ....... . . .. . .. . ..... . ... . . ..... .. . .. .. . ... . . . .. . . . . .. . . . . ..... ... ..... .. . . . . ... . . ..... . ... . . . . . ........... . ... .. .. . ............ . . ...... .. . . . . . . . . . . . . .. . . .
lowQualScore : 00 4 88 0 888 22222 8 666 555555555 7 7 777777777 9 4 000 0 99 77 0 7 0 5555 0 00 00000000000000000000000000 0 99 1111 8 0 9 88888 999999999999 9 4 999999999 7 999999 7 1 22222222 8 0 000 22222222222222 2 8 2 0 777777777777777777777777777777777777777777777 0000 2 0 888 2222 88 0 2222 5 8 2222222222222222222222222 0 2 222222 0 555555 222 00 9 0 4444 7 77 1 0 77777 77 99 1111 6 0 0 1111111 33333 88888 7 0 0 000 0 5555555 2 0 44 2 99 0 00000 8 222 0 0 99999 55 0 33 11 0 333 4 4 0 22 0 0 1 2 88 2 0 4 6 99999 999 77777 77 7 7 7 0 000 7 0 77777 4 666 0 9 3 3 7 00000000000 0 777 22 22 7 000000000000 0 7 222222 22 7 2 0 7 0 0 3 2 0 0 0 7 33 5 0 0
consensus : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCAAGAATACTACTTGACGTATTTGAATATTGTGAGAAACAAATAACCGAGGAT----AT-A-C-TTTTA-ATTNTCC--G-ATTTTGAAAAAGCTTTTGATTCTGTCGAATGGAA---TTTCNTG--TTTAA--AGCNCTA-AAAAAATTTAATTTTGG-TGAAAATTTTAT-AAAATGGATTAAA-AT-NCTAT-A-TA-TAA--CAA-CT--TTC----TTCANA--TTAAAAAAT---AATGGNTGGATNTCNAAAACA----CGTAAAAT---G-A--TCGCGTGGAATTAGA---------CAAGGCTGTCC-----TATCTCNGCGATGATTTATATTTCTTTTCG-TGTTAGAAATACTAGCAATTCGACTGCGTCAAAATAATGACGAAATA--CGGT-------CA-GGT-AT-ATACCAA---TG---AAGAA-TAAAAA-CG-TACAACACGCNGACGATT-T-AACATTA-CTGT--TAAAAGATA-TAA--CGTCTATGAAA-A--AGCGATT----GCT---AATGAAANCAATA----AATTTNGT-----GAATA-CGCANGGTCTAAAACTTAATCAT-GANAAAACCG--AATGTATNCTTCTT----GGANGTTTAA--AAG----ATAG-TNTC-----GAAGA-A---ATTN-G--TGGTA-TA-AAA---GT-AACTAAT--AAAG-CG-GTTAAATGCCTAGGNGTA-----TATTT--AGGNCATGATANAGACGAA-T--GT-TATAAC-AAAAATTGGAC-GA-AAANT-TAT-AACGANATGGAAAAAA-TNTTTGA-GTCGTGGAAAAAGAGAAAA--TTAACTNTATTCGGAAAA-NC-TTGTA-T-ATAAA-C-CNCCTGCNATTT-CAAAATTA-A-TNT---A-TGCATCCT-CA-ATCTTAC-NTATNCCTGATGAAAATTT-CATAAAAAGTAT-AAACAAACTTATTTTTAATTTTATTTGG---AACAAAANTGATTAGGATTAAAAGGAATACTTTGATTGGNTCNAAT-A--NCAGAAGGNGGTAT-TG-GTGG-TTGTCAGACGTATNTTCA-AAANTNAAAGCTATTAAANCNTCNTGGGTACAAAGAATCTGTAACGAAGGGGTTATTAANAGNTTTTG
Reference ( family-2599 ) : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCAAGAATACTACTTGACGTATTTGAATATTGTGAGAAACAAATAACCGAGGAT----AT-A-C-TTTTA-ATTNTCC--G-ATTTTGAAAAAGCTTTTGATTCTGTCGAATGGAA---TTTCNTG--TTTAA--AGCNCTA-AAAAAATTTAATTTTGG-TGAAAATTTTAT-AAAATGGATTAAA-AT-NCTAT-A-TA-TAA--CAA-CT--TTC----TTCANA--TTAAAAAAT---AATGGNTGGATNTCNAAAACA----CGTAAAAT---G-A--TCGCGTGGAATTAGA---------CAAGGCTGTCC-----TATCTCNGCGATGATTTATATTTCTTTTCG-TGTTAGAAATACTAGCAATTCGACTGCGTCAAAATAATGACGAAATA--CGGT-------CA-GGT-AT-ATACCAA---TG---AAGAA-TAAAAA-CG-TACAACACGCNGACGATT-T-AACATTA-CTGT--TAAAAGATA-TAA--CGTCTATGAAA-A--AGCGATT----GCT---AATGAAANCAATA----AATTTNGT-----GAATA-CGCANGGTCTAAAACTTAATCAT-GANAAAACCG--AATGTATNCTTCTT----GGANGTTTAA--AAG----ATAG-TNTC-----GAAGA-A---ATTN-G--TGGTA-TA-AAA---GT-AACTAAT--AAAG-CG-GTTAAATGCCTAGGNGTA-----TATTT--AGGNCATGATANAGACGAA-T--GT-TATAAC-AAAAATTGGAC-GA-AAANT-TAT-AACGANATGGAAAAAA-TNTTTGA-GTCGTGGAAAAAGAGAAAA--TTAACTNTATTCGGAAAA-NC-TTGTA-T-ATAAA-C-CNCCTGCNATTT-CAAAATTA-A-TNT---A-TGCATCCT-CA-ATCTTAC-NTATNCCTGATGAAAATTT-CATAAAAAGTAT-AAACAAACTTATTTTTAATTTTATTTGG---AACAAAANTGATTAGGATTAAAAGGAATACTTTGATTGGNTCNAAT-A--NCAGAAGGNGGTAT-TG-GTGG-TTGTCAGACGTATNTTCA-AAANTNAAAGCTATTAAANCNTCNTGGGTACAAAGAATCTGTAACGAAGGGGTTATTAANAGNTTTTG
gi|1 : CAAGATGGCTACTTGATGTTTTTGA------T-----ACAAATAAT-GAGGGT----AT-A-C-TTTTA-AT-GTTA--G-ATTTTGAAAAGGCGTTTGATGCTGTAGAGTGGAA---CTTTGTG--TTTAA--GGTGTTG-AAAAATTTTAAATTTGG-TGAAAATTTTAT-AACATGGATTAAA-AT-ATTAT-A-CACTAA--CA--CT--TTC----TTTAAA--TTAAAGAAC----------GGATTTC--AGTCA----TGTAGAAT---GTA--T---GTGGAAT-AGA---------CAGGGATGTCC-----TCTTTCCGCTAT--TTTATATTTATTT--G-TGT--GAGATACTAGC--TTTGA--GTAT-AAAACAA-GAC-AAATA--CAAT-------TAAGGT-ATTATACCAAATATGTTCAAGAAATAAAAAACA-TTCAGCACGCTGATGATC-T-AACATTAACTGT--TAAAAGATA-TAA--C-TTTATGAAG-ACAAGCGATTTGGCGTT---ACT---AGCAA-A----AGTTTTGTTCAGCGAAT---GCAGGGTCCAAA--TTAATTAT-ACTAAAACTG--AATGTATCCTTCTT----CGACGTCTAA--AGA----ATAG-TGTC-----AAAGA-A---ATTA-G--TGGCG-TA-AAA---AC-GACTAAT--AAAG-CA-GTAAAATGTTTAGGAATA-----TACTT--CGGTCATGATACAATTGAT-T--GT-TACGAT-AAAAATTGGAT-GA-AAACT-TAT-CATGACATGGAAAAAA-TGTTCGA-GTCATGGAAGAAGAGGCGA--CTGACTTTATTTGGCAAA-AC-TTGTATT-ATAAATT-CTCCTGCGATTT-CAAACTTT-A-TTT---A-TGTTGCCT-CA-ATTTTAC-CTATTCCTGATGAAAATCT-TTTGAAAAATATAAAACGTAC-TATTTTTAATTTTCTTTGG---AATAAGACTGA-CAGGATTAAAAGGAATACTTTGATTGG---CAAT-GTTTCAGAGGGAGGTAT-TG-GT-G-TTGT-AGATATATATTTA-AAAATTAAAGCTATTAAAGCCTCCTGGATACAAAGAATCAGTAACAAAGGGGTTA-TAAAAGTTTTTG
gi|10 : catatataaagggtaggattattggtgaaaatgATAC--CTAGACATATTTGAATATTGTGAGAAACAA-TAACCAAAGAT----A--A-C-TTTTA-ATTATCC--A-ATTTTGAGAAAGCTTTTGATTCTGTCGAAGGAAA---TTTCCTC--TTTAAACAGCTTTA-AGAAAATTCAATTTTGGATAAGAATTTT----AAATGGATCAAATAT-TCTATAA-TA-TCC--CTA-AT--TT-----TTCGCA--TAAAAAAAT----ATGGATGGATCTCTAAAACA----CTTAAAAT---G-ACCTCGCGTGGAATTAGA---------CAAGGCTGTCC-----TATCTC-GCGt
gi|11 : attaaaggcgatacatcggagaaaaatgctcgtttgATAC--CTAGACATATTTGAATATTGTGAGAAACAA-TAACCAAAGAT----A--A-C-TTTTA-ATTATCC--A-ATTTTGAGAAAGCTTTTGATTCTGTCGAAGGAAA---TTTCCTC--TTTAAACAGCTTTA-AGAAAATTCAATTTTGGATAAGAATTTT----AAATGGATCAAATAT-TCTATAA-TA-TCC--CTA-AT--TT-----TTCGCA--TAAAAAAAT----ATGGATGGATCTCTAAAACA----CTTAAAAT---G-ACCTCGCGTGGAATTAGA---------CAAGGCTGTCC-----TATCTC-GCG
gi|13 : attaaaggcgatacatcggagaaaaatgctcgtttgAAGAATCATCCTTGA----TTTAA---TTGTGAAATTCAAATGACCC-TCAT----AT---C-TTGTT-ATTCTGT--G-ACTTTGAAAA-GTTCTTGA--CTGTAGAATGAGAGGTTTTTTTAAATTTAA--AACACTG-ACAAAATTTAATTATAG-TGAAAAATTT----AGATGGATTAAA-AT-
gi|14 : gatattggatttagtgtAG-TTT------GAAGA-A---CTTT-T--TGGTA-TT-GAA---GT-AACAAAT--AGAG-CG-ACTAAATGTCTA--TGTA-----TCTTTCTACGCCATGATAAAGAAGAA-T--GT-TATATC-AAAAATTGGAT-GA-AAATA-TAC-AACGAAATGGAAA
gi|15 : TAAAAAAT---AATGGATGGATATCCAAAACA----TGTTCAAT---G-A---AAAGAGGAATTAGA---------TAAGGCTGTCC-----AATTTCAGCGATAATT----TTTCTTTTCG-TTGTAGAAATAt
gi|16 : ccctatattccgcaTTTAATTTTGG-TGATAATTTTAT-AAAGTGGATAAAT-AT-ACTAT-A-TA--AA--GAATCT--ATC----TTTAGA--TTAAAAAAT---AATGGGTGGATGTCAAAAACA----AGTAAAatgtca
gi|2 : -TTTTACATTTTTG--GGATTTTCAAAAAGCTTTTGATTCAGTCAAATGGAA---CTTTATG--TTTGA--AACCTTA-AAGCGATTTAACTTTGG-AGAAAACTTTTT-GCAATGGATTCCA-AT-ACTAT-A-TA--AA--CAA-CCAATT-----TTTAAG--CTAAAAAAT---AATGGGTGGATTTCCAAAACG----TG--------------TCACATGGAA--AGAAGCATACGGCAGGGCTGCCC-----GATATCTTCGATG----ATATTCCTCTTCG-TTGCAGAAATCCTATCAA----------TCAAAATAATGcatagaa
gi|2 : gaattacgacggaGGCA-TA-AAG---GTTAACCGAG--ACTG-CA--TTAAAGTCTTGGGAATT-----TATAT--AGATCATGATATAGAGAAA-T--GTATAGAAA-AAAAATGGGGA-AACAAAAT-TA--AA-GAACTCGAGAGAC-TCTTTGA-ATCATGGAAAAAAAGAAAA--TTAAGTATTTTCGGAAAA-AC-GTGTA-TCATAAA-CAATTTTGCTATAT-TAAAATTA-A-TAT---A-CA-ATCTTACA-CTCCTAC-CTTACCCTAGTGCTGATAT-TATCAAAAACAT-AAATAGATTGATTTTCAATTTCATTTGG---AACAAAAGGGA-TAGAATAAAGTGAAAAACTTTAAAAGGGGCCACTAA--GCAG--GGTGGCATATG---GG-TTAT-AGACGTAGAGTCA-AAAGCAAAAGCAATAAAATGTTCCTGGATAtctaaccgtgagattctgtgatttaaaacgtcaaagatgtccacagacataaacttgatacagcacgccgatgttgctacgctcgcactacgcgacgaaaaagcattacaactagcaatcacctgcataaagaacttcggaaacatttctggattaattttaaatgtaaaccaaacagaatgcttgttattaggctctctgaaagattcagtccgtgttttacacggcataaaggttaaccgagactgcattaaagtcttgggaatttatatagatcatgatatagagaaatgtatagaaaaaaaatggggaaacaaaattaaagaactcgagagactctttgaatcatggaaaaaaagaaaattaagtattttcggaaaaacgtgtatcataaacaattttgctatattaaaattaatatacaatcttacactcctaccttaccctagtgctgatattatcaaaaacataaatagattgattttcaatttcatttggaacaaaagggatagaataaagtgaaaaactttaaaaggggccactaagcagggtggcatatgggttatagacgtagagtcaaaagcaaaagcaataaaatgttcctggata
gi|3 : gaattacgacggattttacatttttgggattttcaaaaagcttttgattcagtcaaatggaactttatgtttgaaaccttaaagcgatttaactttggagaaaactttttgcaatggattccaatactatataaacaaccaatttttaagctaaaaaataatgggtggatttccaaaacgtgtcacatggaaagaagcatacggcagggctgcccgatatcttcgatgatattcctcttcgttgcagaaatcctatcaatcaaaataatgtctaaccgtgagattctgtgatttaaaacgtcaaagatgtccacagacataaacttgatacagcacgccgatgttgctacgctcgcactacgcgacgaaaaagcattacaactagcaatcacctgcataaagaacttcggaaacatttctggattaattttaaatgtaaaccaaacagaatgcttgttattaggctctctgaaagattcagtccgtgttttacacCAAGAATACTACTTGAAATATTTGAATATTGTG-----CAATTAATC-AGGATTTTGAT-GGCATTTTA-CTTTTCCTAG-ATTTTGAAAATGCTTTTGATTCTGTTGAATATGA---TTTCATG--TACAA--AACTCTAGAAAAAATTCGATTTTGG-TGAAAATTTTATCAAAATGA--TAAA-ATCACTAT-ATTC-CAAGCCAA-TT--TTCAA--TTCAAGTTTTAAAAAATCACAACGGTTGGGTGTCTAAATCATGTGCATGAAATGCAG-A--TCAAGAGGCATTAGA---------CAAAGATGTCCTGTGTTATCACTACTACA---TGTATTTATTTTCA-TGTTAGAAATACTAGCAGTTCCACTG---AAAAATAATGACGAAATACTCGGTCTATCGCCA-GGTGATGATACTAA---TG---AAAAATTAAAAATCG-TGCAACATGCAGATGATTGTAAATATT---TGT--TAAAAGATAGTAATTCGT---TGAAA-A-----------------------AAAACAATAGGTGGATTTAGT------AATGTCGCA-GGCCCGAAATTGAATTTG-GATAAAACAG--AATG----CTTATTGACAGGAAGTCTTATTGAG----AT-G-TATCTAAATGAAGA-ATATATTT-G--TGGTGTTA-AAA---TT-GA-TACA--AAAA-TACGTAAAATCAATAGGTGCA-----TATTT--AGGACATGATAAGGAT--A-TTAGC-TATGAA-ATGAACTGGAC-AA-
gi|4 : tcatatgaataaaggttctacatAT----ATTA-C-TTTTA-CT----C--G-ATTTTCAAAGAGCATTTGATTCCGTCGAATGGTC---TTTTATG---ATAA--AGCACTC-AAGTTCTTTAGGTTTGG-ACAAAAATTCAC--CAATGGATTCAA-AT-TTTGT-A-T--TAA--AAG-C-----CAGAATTTAGA--CTAAAAAAT---AATAATTGACTGTCAAAAACA----TGTAAAGT---G-A---GGCGGGGAATTCGT---------CAAGGATGTTC-----GATATCAGCGATGATT----TTTCTATTTGTTGTT-GAAGTATTGGCAATTAGATTACGTCGA---AATGACACAAT------T-------CATGGT----------------------AG-TAAAAA-CATTACAACATGCTGACGATT-C-TACATTA-CCTT--TGAGGGACA-TTA--CGTCTGTAAAATC--AGCGAT-------T---AATGAAATCAATA----CTTTCAGC-----AAATA-CTC-TGGTATGAAATTAAACCTT-TCAAAAACAG--AGCGCATTTTATTA----GGACCATTAA--AAGGCCAACAGATACA-----GACGG-C---ATTA-C--T-GTA-TA--------T-GAC---------G-CG-------TGCGTAAAGGTAATAGGTATTC----GGCATGATAAAGATTTA-T--GT-TTTAAA-AATAATTGGAC-CA-AAAAG-ATT-GATGATATAGAAAAGC-TGTTTTA-ATCGTGTAAAAA-ATAAAG--TTAA
gi|5 : aAAGGTTTAAAACTTAATCAT-AAGTAAACCGGAAATA-ATACTTCTG----GGATCTTTAA--AAG----GAAG-TTTT-----TGATATA---ATTA-GAAGGGAA-TA-AAA---GT-AA--AATGAAAAGACA-GTTAAATGCCTGGGTGTA-----T-TTT--AGGACATGAATGAAACAAGGT--GT-TATAACTCAGAATTGGAT-GA-AAGGTATAT-AATAATATGGGAAAAACTTTTTGATGTCGTGGAAAAAGAGAAAAGCTTTACTATATTTGAAAAA-TG-TTGTA-T-ATAAA-C--ACCTGCT-TTT-CAAAATTA-A-TTTTACA-TGCATCCT--A---CTTA--ATATGCCAAATGAAAAGTTACATAAAAAGTAT-TAACAAACTTATTTTTAACTTTATTTGG---AACAAAACTGATTAGAATTAAAA-GAATACATTGATTGGTTCTAAT-A--ACAAAATGTGGTAT-TGAGTGGTTTGTCCGATGTGTTTTCA-AAACTGAAAGCT-TTGAAACATCATGGGT
gi|6 : AAGGTTTAAAACTTAATCAT-AAGTAAACCGGAAATA-ATACTTCTG----GGATCTTTAA--AAG----GAAG-TTTT-----TGATATA---ATTA-GAAGGGAA-TA-AAA---GT-AA--AATGAAAAGACA-GTTAAATGCCTGGGTGTA-----T-TTT--AGGACATGAATGAAACAAGGT--GT-TATAACTCAGAATTGGAT-GA-AAGGTATAT-AATAATATGGGAAAAACTTTTTGATGTCGTGGAAAAAGAGAAAAGCTTTACTATATTTGAAAAA-TG-TTGTA-T-ATAAA-C--ACCTGCT-TTT-CAAAATTA-A-TTTTACA-TGCATCCT--A---CTTA--ATATGCCAAATGAAAAGTTACATAAAAAGTAT-TAACAAACTTATTTTTAACTTTATTTGG---AACAAAACTGATTAGAATTAAAA-GAATACATTGATTGGTTCTAAT-A--ACAAAATGTGGTAT-TGAGTGGTTTGTCCGATGTGTTTTCA-AAACTGAAAGCT-TTGAAACATCATGGGT
gi|7 : AAATTAATTAT-GCTAAAACTG--AATGTATCCTTCTT----GGAAGTTTAA--AGA----ATAG-TGTC-----AAAGA-A---ATTC-G--TGGCA-TA-AAA---AC-GACTGGT--AAAG-CA-ATAAAATGTTTAGGAATA-----TACTT--CGGTCATGATACAATTGAT-T--GT-TACCAT-AAAAATTGGAT-GA-AAACT-TAT-CATGACATGGAAAAAA-TGTTTGA-GACATGAAAGAAAAGGCAA--CTAACTTTATTTGGCATA-AC-TTGTATT-ATAAATT-CTCTTGCGTTTT-CTAAATTT-A-TTT---A-TGTTGCCT-CA-ATTTTAC-CTATTCCTGATGAAAATCT-TTTGAAAAATAT-A---AAAC------------------GG---AATAAGAATGA-CAGGATTAAAAGGAATACTTTGATTGGCT-AAAT-GT-TTAGAGGGATGTA---G-GT-G-TTGGTAGATATATATTTA-AAAATTAAAGCTATT-AAGCCTCTTGGATACAAAGAAT-TATAGTCAAAGGGTTATTAATAGATTTTG
gi|8 : -TAAAAG-TG-TACAACGCTCAGACGATT-T-ATCA--G-CTGCGGTAAAAGATG-AAA--TATCTATGAAA-A--A-----T----GCCCTAAATGAAATCAATA----AATTTTGT-----GAATA-TGCTCGTTCTAAAA-TTAAT-ATCGACAAAACCG--AATGTATTTTGCTT----GGAAGGTTGC--AAA----ATAA-GTTT-----GAAGA-A---CTTT-T--TAGTA-TT-ACA---GT-AACAAAT--AGAG-CG-ACTAAATGTCTAGGTATC-----TTTCT--AGGTCATGATAAAGAAGAA-T--GT-TATATC-AAAAATTGGAT-GA-AAATA-TAC-AACGAAATGGAAAAAT-TGTTTGA-ATCCTGGAAAAGAAGAAAA--TTAACACTTTTTGGTAAA-GC-ATGCA-TAATAA----CACTTGCCATTT-CAAAATAA-G-TAT---A-TGTATCTT-CA-ATATTGT-GTTTTCCTGATAAAGA
gi|9 : gaaat-A---ATTATA--TGGTA-TACAAATTTAT-AACTAAT--GCAC-CG-ATTAAATGTTTAGGAATA-----TATAT--AGGGCATGCTATTAACCAA-T--GC-TACATT-AAAGATTGGACGGA-AAAAT-GATAAACTAGA--GAGAAAA--CTTACA-AT-ATGGAACACGAGAAAA--TTGACTTTATACGGAAAATGCACTGTA---ATGAA-C-ACTTTGGCATTGACACAATTATACTAT---AGTGCAT-----ATATTTTGTAATATCCCGGA--AAAATTT-CATAAACAG---------------TTTTCAATTTTCTTTGGGGCAACAGAAA--AC--GGATAAAAAGAAATACTTTGATTGGA--AAACAA--GAAGAAGGAGGGAT-AG-GC-A-TTGTT-GACAT-TGTTTGTAAATTAAAAGCGCTTAAATCGGCATGGGTAAAACGAATCTGTAATGAA
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|12 ): AGAAAGCTTAATGCTAATAAAATAATGTGTAATCGTGAGATTCTGGGATTTAAAACGTCAAAGATGTTCGCAGACATAACATTGATACAACATGCTGACGATACTACGCTCGCATTACACGACCAAAAAGCATTACAATTAGCAATCACTTGTATAAAGATCTGAATTAATTCTAACTGTTAACAAATACATACTGTGTTA
Alignments
lowQualScore : 111111111111111111111111111111111111111111111 1111111111111111111111111
lowQualScore : 11 11 111 11111 1 111 222222222 111111111 111 11 1 2222 1 55555555555555555555555555 1111 11111 222222222222 222222222 111111 1 44444444 111 55555555555555 1 444444444444444444444444444444444444444444444 2222 111 1111 11 1 1111 0000000000000000000000000 222222 333333 111 11 11 1 11111 1111 1111111 11111 11111 1111111 11 11111 11111 11 11 1 11 222 22222 222 11111 111 1 11111111111 111 22 222222222222 333333 11 1 1
lowQualScore : 66 1 22 1 111 66666 5 333 777777777 5 5 111111111 3 0 000 1 77 55 1 5 0 7777 0 66 22222222222222222222222222 1 77 8888 2 1 5 11111 999999999999 1 1 222222222 0 555555 1 2 33333333 0 8 000 11111111111111 3 0 3 2 555555555555555555555555555555555555555555555 2222 1 1 444 7777 33 0 4444 6 0 7777777777777777777777777 1 3 333333 1 111111 777 11 8 4 8888 1 55 4 3 33333 11 77 2222 0 5 1 8888888 00000 77777 0 4 4 777 4 5555555 1 8 00 1 11 1 00000 5 666 1 1 11111 55 4 00 66 4 999 4 4 1 00 1 0 1 2 33 1 1 1 1 99999 000 77777 99 5 5 5 1 000 5 4 88888 0 555 1 1 0 3 1 99999999999 3 111 44 22 6 888888888888 1 6 000000 99 0 4 1 6 1 1 1 4 1 1 1 6 44 5 1 1
lowQualScore : .. . .. . ... ..... . ... ......... . . ......... . . ... . .. .. . . . .... . .. .......................... . .. .... . . . ..... ............ . . ......... . ...... . . ........ . . ... .............. . . . . ............................................. .... . . ... .... .. . .... . . ......................... . . ...... . ...... ... .. . . .... . .. . . ..... .. .. .... . . . ....... ..... ..... . . . ... . ....... . . .. . .. . ..... . ... . . ..... .. . .. .. . ... . . . .. . . . . .. . . . . ..... ... ..... .. . . . . ... . . ..... . ... . . . . . ........... . ... .. .. . ............ . . ...... .. . . . . . . . . . . . . .. . . .
lowQualScore : 00 4 88 0 888 22222 8 666 555555555 7 7 777777777 9 4 000 0 99 77 0 7 0 5555 0 00 00000000000000000000000000 0 99 1111 8 0 9 88888 999999999999 9 4 999999999 7 999999 7 1 22222222 8 0 000 22222222222222 2 8 2 0 777777777777777777777777777777777777777777777 0000 2 0 888 2222 88 0 2222 5 8 2222222222222222222222222 0 2 222222 0 555555 222 00 9 0 4444 7 77 1 0 77777 77 99 1111 6 0 0 1111111 33333 88888 7 0 0 000 0 5555555 2 0 44 2 99 0 00000 8 222 0 0 99999 55 0 33 11 0 333 4 4 0 22 0 0 1 2 88 2 0 4 6 99999 999 77777 77 7 7 7 0 000 7 0 77777 4 666 0 9 3 3 7 00000000000 0 777 22 22 7 000000000000 0 7 222222 22 7 2 0 7 0 0 3 2 0 0 0 7 33 5 0 0
consensus : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCAAGAATACTACTTGACGTATTTGAATATTGTGAGAAACAAATAACCGAGGAT----AT-A-C-TTTTA-ATTNTCC--G-ATTTTGAAAAAGCTTTTGATTCTGTCGAATGGAA---TTTCNTG--TTTAA--AGCNCTA-AAAAAATTTAATTTTGG-TGAAAATTTTAT-AAAATGGATTAAA-AT-NCTAT-A-TA-TAA--CAA-CT--TTC----TTCANA--TTAAAAAAT---AATGGNTGGATNTCNAAAACA----CGTAAAAT---G-A--TCGCGTGGAATTAGA---------CAAGGCTGTCC-----TATCTCNGCGATGATTTATATTTCTTTTCG-TGTTAGAAATACTAGCAATTCGACTGCGTCAAAATAATGACGAAATA--CGGT-------CA-GGT-AT-ATACCAA---TG---AAGAA-TAAAAA-CG-TACAACACGCNGACGATT-T-AACATTA-CTGT--TAAAAGATA-TAA--CGTCTATGAAA-A--AGCGATT----GCT---AATGAAANCAATA----AATTTNGT-----GAATA-CGCANGGTCTAAAACTTAATCAT-GANAAAACCG--AATGTATNCTTCTT----GGANGTTTAA--AAG----ATAG-TNTC-----GAAGA-A---ATTN-G--TGGTA-TA-AAA---GT-AACTAAT--AAAG-CG-GTTAAATGCCTAGGNGTA-----TATTT--AGGNCATGATANAGACGAA-T--GT-TATAAC-AAAAATTGGAC-GA-AAANT-TAT-AACGANATGGAAAAAA-TNTTTGA-GTCGTGGAAAAAGAGAAAA--TTAACTNTATTCGGAAAA-NC-TTGTA-T-ATAAA-C-CNCCTGCNATTT-CAAAATTA-A-TNT---A-TGCATCCT-CA-ATCTTAC-NTATNCCTGATGAAAATTT-CATAAAAAGTAT-AAACAAACTTATTTTTAATTTTATTTGG---AACAAAANTGATTAGGATTAAAAGGAATACTTTGATTGGNTCNAAT-A--NCAGAAGGNGGTAT-TG-GTGG-TTGTCAGACGTATNTTCA-AAANTNAAAGCTATTAAANCNTCNTGGGTACAAAGAATCTGTAACGAAGGGGTTATTAANAGNTTTTG
Reference ( family-2599 ) : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCAAGAATACTACTTGACGTATTTGAATATTGTGAGAAACAAATAACCGAGGAT----AT-A-C-TTTTA-ATTNTCC--G-ATTTTGAAAAAGCTTTTGATTCTGTCGAATGGAA---TTTCNTG--TTTAA--AGCNCTA-AAAAAATTTAATTTTGG-TGAAAATTTTAT-AAAATGGATTAAA-AT-NCTAT-A-TA-TAA--CAA-CT--TTC----TTCANA--TTAAAAAAT---AATGGNTGGATNTCNAAAACA----CGTAAAAT---G-A--TCGCGTGGAATTAGA---------CAAGGCTGTCC-----TATCTCNGCGATGATTTATATTTCTTTTCG-TGTTAGAAATACTAGCAATTCGACTGCGTCAAAATAATGACGAAATA--CGGT-------CA-GGT-AT-ATACCAA---TG---AAGAA-TAAAAA-CG-TACAACACGCNGACGATT-T-AACATTA-CTGT--TAAAAGATA-TAA--CGTCTATGAAA-A--AGCGATT----GCT---AATGAAANCAATA----AATTTNGT-----GAATA-CGCANGGTCTAAAACTTAATCAT-GANAAAACCG--AATGTATNCTTCTT----GGANGTTTAA--AAG----ATAG-TNTC-----GAAGA-A---ATTN-G--TGGTA-TA-AAA---GT-AACTAAT--AAAG-CG-GTTAAATGCCTAGGNGTA-----TATTT--AGGNCATGATANAGACGAA-T--GT-TATAAC-AAAAATTGGAC-GA-AAANT-TAT-AACGANATGGAAAAAA-TNTTTGA-GTCGTGGAAAAAGAGAAAA--TTAACTNTATTCGGAAAA-NC-TTGTA-T-ATAAA-C-CNCCTGCNATTT-CAAAATTA-A-TNT---A-TGCATCCT-CA-ATCTTAC-NTATNCCTGATGAAAATTT-CATAAAAAGTAT-AAACAAACTTATTTTTAATTTTATTTGG---AACAAAANTGATTAGGATTAAAAGGAATACTTTGATTGGNTCNAAT-A--NCAGAAGGNGGTAT-TG-GTGG-TTGTCAGACGTATNTTCA-AAANTNAAAGCTATTAAANCNTCNTGGGTACAAAGAATCTGTAACGAAGGGGTTATTAANAGNTTTTG
gi|1 : CAAGATGGCTACTTGATGTTTTTGA------T-----ACAAATAAT-GAGGGT----AT-A-C-TTTTA-AT-GTTA--G-ATTTTGAAAAGGCGTTTGATGCTGTAGAGTGGAA---CTTTGTG--TTTAA--GGTGTTG-AAAAATTTTAAATTTGG-TGAAAATTTTAT-AACATGGATTAAA-AT-ATTAT-A-CACTAA--CA--CT--TTC----TTTAAA--TTAAAGAAC----------GGATTTC--AGTCA----TGTAGAAT---GTA--T---GTGGAAT-AGA---------CAGGGATGTCC-----TCTTTCCGCTAT--TTTATATTTATTT--G-TGT--GAGATACTAGC--TTTGA--GTAT-AAAACAA-GAC-AAATA--CAAT-------TAAGGT-ATTATACCAAATATGTTCAAGAAATAAAAAACA-TTCAGCACGCTGATGATC-T-AACATTAACTGT--TAAAAGATA-TAA--C-TTTATGAAG-ACAAGCGATTTGGCGTT---ACT---AGCAA-A----AGTTTTGTTCAGCGAAT---GCAGGGTCCAAA--TTAATTAT-ACTAAAACTG--AATGTATCCTTCTT----CGACGTCTAA--AGA----ATAG-TGTC-----AAAGA-A---ATTA-G--TGGCG-TA-AAA---AC-GACTAAT--AAAG-CA-GTAAAATGTTTAGGAATA-----TACTT--CGGTCATGATACAATTGAT-T--GT-TACGAT-AAAAATTGGAT-GA-AAACT-TAT-CATGACATGGAAAAAA-TGTTCGA-GTCATGGAAGAAGAGGCGA--CTGACTTTATTTGGCAAA-AC-TTGTATT-ATAAATT-CTCCTGCGATTT-CAAACTTT-A-TTT---A-TGTTGCCT-CA-ATTTTAC-CTATTCCTGATGAAAATCT-TTTGAAAAATATAAAACGTAC-TATTTTTAATTTTCTTTGG---AATAAGACTGA-CAGGATTAAAAGGAATACTTTGATTGG---CAAT-GTTTCAGAGGGAGGTAT-TG-GT-G-TTGT-AGATATATATTTA-AAAATTAAAGCTATTAAAGCCTCCTGGATACAAAGAATCAGTAACAAAGGGGTTA-TAAAAGTTTTTG
gi|10 : catatataaagggtaggattattggtgaaaatgATAC--CTAGACATATTTGAATATTGTGAGAAACAA-TAACCAAAGAT----A--A-C-TTTTA-ATTATCC--A-ATTTTGAGAAAGCTTTTGATTCTGTCGAAGGAAA---TTTCCTC--TTTAAACAGCTTTA-AGAAAATTCAATTTTGGATAAGAATTTT----AAATGGATCAAATAT-TCTATAA-TA-TCC--CTA-AT--TT-----TTCGCA--TAAAAAAAT----ATGGATGGATCTCTAAAACA----CTTAAAAT---G-ACCTCGCGTGGAATTAGA---------CAAGGCTGTCC-----TATCTC-GCGt
gi|11 : attaaaggcgatacatcggagaaaaatgctcgtttgATAC--CTAGACATATTTGAATATTGTGAGAAACAA-TAACCAAAGAT----A--A-C-TTTTA-ATTATCC--A-ATTTTGAGAAAGCTTTTGATTCTGTCGAAGGAAA---TTTCCTC--TTTAAACAGCTTTA-AGAAAATTCAATTTTGGATAAGAATTTT----AAATGGATCAAATAT-TCTATAA-TA-TCC--CTA-AT--TT-----TTCGCA--TAAAAAAAT----ATGGATGGATCTCTAAAACA----CTTAAAAT---G-ACCTCGCGTGGAATTAGA---------CAAGGCTGTCC-----TATCTC-GCG
gi|13 : attaaaggcgatacatcggagaaaaatgctcgtttgAAGAATCATCCTTGA----TTTAA---TTGTGAAATTCAAATGACCC-TCAT----AT---C-TTGTT-ATTCTGT--G-ACTTTGAAAA-GTTCTTGA--CTGTAGAATGAGAGGTTTTTTTAAATTTAA--AACACTG-ACAAAATTTAATTATAG-TGAAAAATTT----AGATGGATTAAA-AT-
gi|14 : gatattggatttagtgtAG-TTT------GAAGA-A---CTTT-T--TGGTA-TT-GAA---GT-AACAAAT--AGAG-CG-ACTAAATGTCTA--TGTA-----TCTTTCTACGCCATGATAAAGAAGAA-T--GT-TATATC-AAAAATTGGAT-GA-AAATA-TAC-AACGAAATGGAAA
gi|15 : TAAAAAAT---AATGGATGGATATCCAAAACA----TGTTCAAT---G-A---AAAGAGGAATTAGA---------TAAGGCTGTCC-----AATTTCAGCGATAATT----TTTCTTTTCG-TTGTAGAAATAt
gi|16 : ccctatattccgcaTTTAATTTTGG-TGATAATTTTAT-AAAGTGGATAAAT-AT-ACTAT-A-TA--AA--GAATCT--ATC----TTTAGA--TTAAAAAAT---AATGGGTGGATGTCAAAAACA----AGTAAAatgtca
gi|2 : -TTTTACATTTTTG--GGATTTTCAAAAAGCTTTTGATTCAGTCAAATGGAA---CTTTATG--TTTGA--AACCTTA-AAGCGATTTAACTTTGG-AGAAAACTTTTT-GCAATGGATTCCA-AT-ACTAT-A-TA--AA--CAA-CCAATT-----TTTAAG--CTAAAAAAT---AATGGGTGGATTTCCAAAACG----TG--------------TCACATGGAA--AGAAGCATACGGCAGGGCTGCCC-----GATATCTTCGATG----ATATTCCTCTTCG-TTGCAGAAATCCTATCAA----------TCAAAATAATGcatagaa
gi|2 : gaattacgacggaGGCA-TA-AAG---GTTAACCGAG--ACTG-CA--TTAAAGTCTTGGGAATT-----TATAT--AGATCATGATATAGAGAAA-T--GTATAGAAA-AAAAATGGGGA-AACAAAAT-TA--AA-GAACTCGAGAGAC-TCTTTGA-ATCATGGAAAAAAAGAAAA--TTAAGTATTTTCGGAAAA-AC-GTGTA-TCATAAA-CAATTTTGCTATAT-TAAAATTA-A-TAT---A-CA-ATCTTACA-CTCCTAC-CTTACCCTAGTGCTGATAT-TATCAAAAACAT-AAATAGATTGATTTTCAATTTCATTTGG---AACAAAAGGGA-TAGAATAAAGTGAAAAACTTTAAAAGGGGCCACTAA--GCAG--GGTGGCATATG---GG-TTAT-AGACGTAGAGTCA-AAAGCAAAAGCAATAAAATGTTCCTGGATAtctaaccgtgagattctgtgatttaaaacgtcaaagatgtccacagacataaacttgatacagcacgccgatgttgctacgctcgcactacgcgacgaaaaagcattacaactagcaatcacctgcataaagaacttcggaaacatttctggattaattttaaatgtaaaccaaacagaatgcttgttattaggctctctgaaagattcagtccgtgttttacacggcataaaggttaaccgagactgcattaaagtcttgggaatttatatagatcatgatatagagaaatgtatagaaaaaaaatggggaaacaaaattaaagaactcgagagactctttgaatcatggaaaaaaagaaaattaagtattttcggaaaaacgtgtatcataaacaattttgctatattaaaattaatatacaatcttacactcctaccttaccctagtgctgatattatcaaaaacataaatagattgattttcaatttcatttggaacaaaagggatagaataaagtgaaaaactttaaaaggggccactaagcagggtggcatatgggttatagacgtagagtcaaaagcaaaagcaataaaatgttcctggata
gi|3 : gaattacgacggattttacatttttgggattttcaaaaagcttttgattcagtcaaatggaactttatgtttgaaaccttaaagcgatttaactttggagaaaactttttgcaatggattccaatactatataaacaaccaatttttaagctaaaaaataatgggtggatttccaaaacgtgtcacatggaaagaagcatacggcagggctgcccgatatcttcgatgatattcctcttcgttgcagaaatcctatcaatcaaaataatgtctaaccgtgagattctgtgatttaaaacgtcaaagatgtccacagacataaacttgatacagcacgccgatgttgctacgctcgcactacgcgacgaaaaagcattacaactagcaatcacctgcataaagaacttcggaaacatttctggattaattttaaatgtaaaccaaacagaatgcttgttattaggctctctgaaagattcagtccgtgttttacacCAAGAATACTACTTGAAATATTTGAATATTGTG-----CAATTAATC-AGGATTTTGAT-GGCATTTTA-CTTTTCCTAG-ATTTTGAAAATGCTTTTGATTCTGTTGAATATGA---TTTCATG--TACAA--AACTCTAGAAAAAATTCGATTTTGG-TGAAAATTTTATCAAAATGA--TAAA-ATCACTAT-ATTC-CAAGCCAA-TT--TTCAA--TTCAAGTTTTAAAAAATCACAACGGTTGGGTGTCTAAATCATGTGCATGAAATGCAG-A--TCAAGAGGCATTAGA---------CAAAGATGTCCTGTGTTATCACTACTACA---TGTATTTATTTTCA-TGTTAGAAATACTAGCAGTTCCACTG---AAAAATAATGACGAAATACTCGGTCTATCGCCA-GGTGATGATACTAA---TG---AAAAATTAAAAATCG-TGCAACATGCAGATGATTGTAAATATT---TGT--TAAAAGATAGTAATTCGT---TGAAA-A-----------------------AAAACAATAGGTGGATTTAGT------AATGTCGCA-GGCCCGAAATTGAATTTG-GATAAAACAG--AATG----CTTATTGACAGGAAGTCTTATTGAG----AT-G-TATCTAAATGAAGA-ATATATTT-G--TGGTGTTA-AAA---TT-GA-TACA--AAAA-TACGTAAAATCAATAGGTGCA-----TATTT--AGGACATGATAAGGAT--A-TTAGC-TATGAA-ATGAACTGGAC-AA-
gi|4 : tcatatgaataaaggttctacatAT----ATTA-C-TTTTA-CT----C--G-ATTTTCAAAGAGCATTTGATTCCGTCGAATGGTC---TTTTATG---ATAA--AGCACTC-AAGTTCTTTAGGTTTGG-ACAAAAATTCAC--CAATGGATTCAA-AT-TTTGT-A-T--TAA--AAG-C-----CAGAATTTAGA--CTAAAAAAT---AATAATTGACTGTCAAAAACA----TGTAAAGT---G-A---GGCGGGGAATTCGT---------CAAGGATGTTC-----GATATCAGCGATGATT----TTTCTATTTGTTGTT-GAAGTATTGGCAATTAGATTACGTCGA---AATGACACAAT------T-------CATGGT----------------------AG-TAAAAA-CATTACAACATGCTGACGATT-C-TACATTA-CCTT--TGAGGGACA-TTA--CGTCTGTAAAATC--AGCGAT-------T---AATGAAATCAATA----CTTTCAGC-----AAATA-CTC-TGGTATGAAATTAAACCTT-TCAAAAACAG--AGCGCATTTTATTA----GGACCATTAA--AAGGCCAACAGATACA-----GACGG-C---ATTA-C--T-GTA-TA--------T-GAC---------G-CG-------TGCGTAAAGGTAATAGGTATTC----GGCATGATAAAGATTTA-T--GT-TTTAAA-AATAATTGGAC-CA-AAAAG-ATT-GATGATATAGAAAAGC-TGTTTTA-ATCGTGTAAAAA-ATAAAG--TTAA
gi|5 : aAAGGTTTAAAACTTAATCAT-AAGTAAACCGGAAATA-ATACTTCTG----GGATCTTTAA--AAG----GAAG-TTTT-----TGATATA---ATTA-GAAGGGAA-TA-AAA---GT-AA--AATGAAAAGACA-GTTAAATGCCTGGGTGTA-----T-TTT--AGGACATGAATGAAACAAGGT--GT-TATAACTCAGAATTGGAT-GA-AAGGTATAT-AATAATATGGGAAAAACTTTTTGATGTCGTGGAAAAAGAGAAAAGCTTTACTATATTTGAAAAA-TG-TTGTA-T-ATAAA-C--ACCTGCT-TTT-CAAAATTA-A-TTTTACA-TGCATCCT--A---CTTA--ATATGCCAAATGAAAAGTTACATAAAAAGTAT-TAACAAACTTATTTTTAACTTTATTTGG---AACAAAACTGATTAGAATTAAAA-GAATACATTGATTGGTTCTAAT-A--ACAAAATGTGGTAT-TGAGTGGTTTGTCCGATGTGTTTTCA-AAACTGAAAGCT-TTGAAACATCATGGGT
gi|6 : AAGGTTTAAAACTTAATCAT-AAGTAAACCGGAAATA-ATACTTCTG----GGATCTTTAA--AAG----GAAG-TTTT-----TGATATA---ATTA-GAAGGGAA-TA-AAA---GT-AA--AATGAAAAGACA-GTTAAATGCCTGGGTGTA-----T-TTT--AGGACATGAATGAAACAAGGT--GT-TATAACTCAGAATTGGAT-GA-AAGGTATAT-AATAATATGGGAAAAACTTTTTGATGTCGTGGAAAAAGAGAAAAGCTTTACTATATTTGAAAAA-TG-TTGTA-T-ATAAA-C--ACCTGCT-TTT-CAAAATTA-A-TTTTACA-TGCATCCT--A---CTTA--ATATGCCAAATGAAAAGTTACATAAAAAGTAT-TAACAAACTTATTTTTAACTTTATTTGG---AACAAAACTGATTAGAATTAAAA-GAATACATTGATTGGTTCTAAT-A--ACAAAATGTGGTAT-TGAGTGGTTTGTCCGATGTGTTTTCA-AAACTGAAAGCT-TTGAAACATCATGGGT
gi|7 : AAATTAATTAT-GCTAAAACTG--AATGTATCCTTCTT----GGAAGTTTAA--AGA----ATAG-TGTC-----AAAGA-A---ATTC-G--TGGCA-TA-AAA---AC-GACTGGT--AAAG-CA-ATAAAATGTTTAGGAATA-----TACTT--CGGTCATGATACAATTGAT-T--GT-TACCAT-AAAAATTGGAT-GA-AAACT-TAT-CATGACATGGAAAAAA-TGTTTGA-GACATGAAAGAAAAGGCAA--CTAACTTTATTTGGCATA-AC-TTGTATT-ATAAATT-CTCTTGCGTTTT-CTAAATTT-A-TTT---A-TGTTGCCT-CA-ATTTTAC-CTATTCCTGATGAAAATCT-TTTGAAAAATAT-A---AAAC------------------GG---AATAAGAATGA-CAGGATTAAAAGGAATACTTTGATTGGCT-AAAT-GT-TTAGAGGGATGTA---G-GT-G-TTGGTAGATATATATTTA-AAAATTAAAGCTATT-AAGCCTCTTGGATACAAAGAAT-TATAGTCAAAGGGTTATTAATAGATTTTG
gi|8 : -TAAAAG-TG-TACAACGCTCAGACGATT-T-ATCA--G-CTGCGGTAAAAGATG-AAA--TATCTATGAAA-A--A-----T----GCCCTAAATGAAATCAATA----AATTTTGT-----GAATA-TGCTCGTTCTAAAA-TTAAT-ATCGACAAAACCG--AATGTATTTTGCTT----GGAAGGTTGC--AAA----ATAA-GTTT-----GAAGA-A---CTTT-T--TAGTA-TT-ACA---GT-AACAAAT--AGAG-CG-ACTAAATGTCTAGGTATC-----TTTCT--AGGTCATGATAAAGAAGAA-T--GT-TATATC-AAAAATTGGAT-GA-AAATA-TAC-AACGAAATGGAAAAAT-TGTTTGA-ATCCTGGAAAAGAAGAAAA--TTAACACTTTTTGGTAAA-GC-ATGCA-TAATAA----CACTTGCCATTT-CAAAATAA-G-TAT---A-TGTATCTT-CA-ATATTGT-GTTTTCCTGATAAAGA
gi|9 : gaaat-A---ATTATA--TGGTA-TACAAATTTAT-AACTAAT--GCAC-CG-ATTAAATGTTTAGGAATA-----TATAT--AGGGCATGCTATTAACCAA-T--GC-TACATT-AAAGATTGGACGGA-AAAAT-GATAAACTAGA--GAGAAAA--CTTACA-AT-ATGGAACACGAGAAAA--TTGACTTTATACGGAAAATGCACTGTA---ATGAA-C-ACTTTGGCATTGACACAATTATACTAT---AGTGCAT-----ATATTTTGTAATATCCCGGA--AAAATTT-CATAAACAG---------------TTTTCAATTTTCTTTGGGGCAACAGAAA--AC--GGATAAAAAGAAATACTTTGATTGGA--AAACAA--GAAGAAGGAGGGAT-AG-GC-A-TTGTT-GACAT-TGTTTGTAAATTAAAAGCGCTTAAATCGGCATGGGTAAAACGAATCTGTAATGAA
blockSeqs : TC A CA A ATA AGAAA A AAA TTTGATGG A C TTTCCTAG A GGT C AA AC T G A ATCA T CA ATTCCAAGCCAATTTTCAA C TT CACA A C T TGTGC GCAGATCAA T T AGCATACGG TGTGTT C A ATGTA T GTA AATTAGATTACGTC A T G ACTCGGTCTATCGCCAGGTGATGATACTAATGAAAAAT TCG G A GTA TTA GG G TTCG C TCAGCGATTAATG A T GGTGGA A A GTC AA T T CGAC A GA C T TGACA AG TT GCCA A T CTAAATG ATAT AGAA T C TTT T CAAAT G A CG T TC T ATAGG C CTA C A CAAGG TA A CT CG C GTA A C A AC C T A A GC A A C A TGCAC TC CAAT TA A T C A TAC G C ACAC TAA C T A C AAATAGATTG A GGC GG TT G GGCCACTAAG T A AGTGGT CC A A T G A A A T T C C TC T T A
blockSeqs : TA A CA A ATA AGAAA T AAA ATTA . . TTTTGGG A . C . AC T . A ATA T T AATATCCCTAATTT C . A A C T C GACCTCGC T T . T C T AATT . GCA AGTTCCACTGA A T A TCATGGTAG CAT A T C TT . . CG C AATGCCCTAAATG T T CT A G AC AA T C GAT A GA T A A CC . . . A AG TA AGAA . . . . CCGAG C A A T CT A . A A T T CAAGG . . CT T . GTA . T A AC G T G G GC A A T A ACG TT TTCT GT . . . T TAC . C CAA CC G A A T TAACAAACTT A . CT TT G TTCTAATAA T . AGTGGT CC G T . C G A G A A A . TG
blockSeqs : . T AA A ATA AAATT . CT AA . . TATCCA A . T . . A . . TTG . T AATATCCCTAATTT G . A A A C C GACCTCGC A T . T T T GATA . TTA AATC . T TG A A T G . . TA . A T T AA T . AT TC C C TCA C . T A G TC . . . A TT TA ATA . . . . AATGA A . G A AA T . A A A A AGAA . . C A . TA . T T C T . G G . T A T A TGT TA CAC CA . . . T . . T CAA CC G A . T TAACAAACTT A . CT T G TTCTAATAA T . GTG TA G T . C G C G A A A
blockSeqs : . T . . . . . AG AA . . TATCCA T . A . . C . . AC . A ATAAAGAATCTATC A . A G G A T GAAAA T T . A A A GATT . TT A C C AAG C . . C G TC . . . T TT A TT . . . . AATGA A . G T CG G . A A G A GAAA . . A C . AT . T T C T . G A . T T T C TGT T CA CA . . . T . . T ATA TG T T . T AAAAC C . AT C . CTAAATGTT A . GCA A A A . A T . A G C T
blockSeqs : AT . . TCTGTG A . A . . T . . . . A ATAAACAACCAATT A . A G T C A GAGGC A T . G C . T A T AAG T . . T T AG . . . T CA C TG . . . . CTGGT A . A T CC T . A A A G TTTA . . A C . AG . T T A G . A A . A C T T ACT T CA T . . . A . . C A A T T . . . . . A C . AAAACAAG A . GG T . G . T A . . T G A
blockSeqs : . . CG . . A . . A . . . . T ATTAAAAGCCAGAA G . . T G T T TCAC G . . G A . . . GCT C . . . T AG . . . G TG A AC . . . . CAAAT A . A A CC T . T C A G TGAT . . A T . CT . C C T G . C G . A T C A GCA . CA T . . . A . . . A A C G
blockSeqs : . . . . T G A T . T G A CG . . . . CTAAT G . A T TT A . A A T C AGAA . . T T . TA . C A A C . A . . G
blockSeqs : A TT . . . . TACA C . . T TC T . . A T A CCAA . . C T . AT . . G
blockSeqs : . . . . C . . . . TT A . . . G T TA . . T T .
blockSeqCons : T* ATA AGAAA AA******* TTTCCG*** T*** A*** GAGTCGC***** GATT**** GTA CA*** TTCTAATAA*** GGTG** CC
originalCons : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCAAGAATACTACTTGACGTATTTGAATATTGTGAGAAACAAATAACCGAGGAT----AT-A-C-TTTTA-ATTNTCC--G-ATTTTGAAAAAGCTTTTGATTCTGTCGAATGGAA---TTTCNTG--TTTAA--AGCNCTA-AAAAAATTTAATTTTGG-TGAAAATTTTAT-AAAATGGATTAAA-AT-NCTAT-A-TA-TAA--CAA-CT--TTC----TTCANA--TTAAAAAAT---AATGGNTGGATNTCNAAAACA----CGTAAAAT---G-A--TCGCGTGGAATTAGA---------CAAGGCTGTCC-----TATCTCNGCGATGATTTATATTTCTTTTCG-TGTTAGAAATACTAGCAATTCGACTGCGTCAAAATAATGACGAAATA--CGGT-------CA-GGT-AT-ATACCAA---TG---AAGAA-TAAAAA-CG-TACAACACGCNGACGATT-T-AACATTA-CTGT--TAAAAGATA-TAA--CGTCTATGAAA-A--AGCGATT----GCT---AATGAAANCAATA----AATTTNGT-----GAATA-CGCANGGTCTAAAACTTAATCAT-GANAAAACCG--AATGTATNCTTCTT----GGANGTTTAA--AAG----ATAG-TNTC-----GAAGA-A---ATTN-G--TGGTA-TA-AAA---GT-AACTAAT--AAAG-CG-GTTAAATGCCTAGGNGTA-----TATTT--AGGNCATGATANAGACGAA-T--GT-TATAAC-AAAAATTGGAC-GA-AAANT-TAT-AACGANATGGAAAAAA-TNTTTGA-GTCGTGGAAAAAGAGAAAA--TTAACTNTATTCGGAAAA-NC-TTGTA-T-ATAAA-C-CNCCTGCNATTT-CAAAATTA-A-TNT---A-TGCATCCT-CA-ATCTTAC-NTATNCCTGATGAAAATTT-CATAAAAAGTAT-AAACAAACTTATTTTTAATTTTATTTGG---AACAAAANTGATTAGGATTAAAAGGAATACTTTGATTGGNTCNAAT-A--NCAGAAGGNGGTAT-TG-GTGG-TTGTCAGACGTATNTTCA-AAANTNAAAGCTATTAAANCNTCNTGGGTACAAAGAATCTGTAACGAAGGGGTTATTAANAGNTTTTG
finalCons : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCAAGAATACT-CTTGACGTATTTGAATATTGTGAGAAACAAATAACCGAGGATAA-------C-TTTTA-ATTTTCCG---ATTTTGAAAAAGCTTTTGATTCTGTCGAATGGAA---TTTCNTG--TTTAA--AGCNCTA-AAAAAATTTAATTTTGG-TGAAAATTTTT---AAATGGATTAAA-AT-NCTAT-A-TA-TAA--CAA-CT--TTC----TTCANA--TTAAAAAATA---ATGGNTGGATNTCNAAAACA----CGTAAAATGAGTCGC-----GTGGAATTAGA---------CAAGGCTGTCC-----TATCTCNGCGATGATT----TTTCTTTTCG-TGGTAGAAATACTAGCAATTCGACTGCGTCAAAATAATGACGAAATA--CGGT-------CA-GGT-AT-ATACCAA---TG---AAGAA-TAAAAA-CG-TACAACACGCNGACGATT-T-AACATTA-CTGT--TAAAAGATA-TAA--CGTCTATGAAA-A--AGCGATT----GCT---AATGAAANCAATA----AATTTNGT-----GAATA-CGCANGGTCTAAAACTTAATCAT-GANAAAACCG--AATGTATNCTTCTT----GGANGTTTAA--AAG----ATAG-TNTC-----GAAGA-A---ATTN-G--TGGTA-TA-AAA---GT-AACTAAT--AAAG-CG-GTTAAATGCCTAGGNGTA-----TATTT--AGGNCATGATANAGACGAA-T--GT-TATAAC-AAAAATTGGAC-GA-AAANT-TAT-AACGANATGGAAAAAA-TNTTTGA-GTCGTGGAAAAAGAGAAAA--TTAACTNTATTCGGAAAA-NC-TTGTA-T-ATAAACA---CCTGCNATTT-CAAAATTA-A-TNT---A-TGCATCCT-CA-ATCTTAC-NTATNCCTGATGAAAATTT-CATAAAAAGTAT-AAACAAACTTATTTTTAATTTTATTTGG---AACAAAANTGATTAGGATTAAAAGGAATACTTTGATTGGTTCTAATAA---CAGAAGGNGGTAT-TGGGTG--TTGTCCGACGTATNTTCA-AAANTNAAAGCTATTAAANCNTCNTGGGTACAAAGAATCTGTAACGAAGGGGTTATTAANAGNTTTTG
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|12 ): AGAAAGCTTAATGCTAATAAAATAATGTGTAATCGTGAGATTCTGGGATTTAAAACGTCAAAGATGTTCGCAGACATAACATTGATACAACATGCTGACGATACTACGCTCGCATTACACGACCAAAAAGCATTACAATTAGCAATCACTTGTATAAAGATCTGAATTAATTCTAACTGTTAACAAATACATACTGTGTTA
Alignments
lowQualScore : 111111111111111111111111111111111111111111111 1111111111111111111111111
lowQualScore : 22 11 111 11111 1 22222222 111111 111 11 1 11 111111 1 55555555555555555555555555 1111 1111 333333333 222222222 111111 1 11 11 55555555555555 1 444444444444444444444444444444444444444444444 2222 111 1111 11 1 1111 0000000000000000000000000 222222 333333 111 11 11 1 11111 1111 1111111 11111 11111 1111111 11 11111 11111 11 11 1 11 111 11 222 11111 111 1 11111111111 111 22 44444444444444444444 1111 11 22 1 1
lowQualScore : 8 99 1 22 1 111 66666 5 99999999 6 5 5 55 444444 3 0 000 1 77 0 55 1 5 5 44 555555 5 5 0 66 22222222222222222222222222 1 77 8888 2 1 5 3 0000 2 333333333 1 1 222222222 0 555555 1 2 77 88 1 11 00 6 11111111111111 3 0 3 2 555555555555555555555555555555555555555555555 2222 1 1 444 7777 33 0 4444 6 0 7777777777777777777777777 1 3 333333 1 111111 777 11 8 4 8888 1 55 4 3 33333 11 77 2222 0 5 1 8888888 00000 77777 0 4 4 777 4 5555555 1 8 00 1 11 1 00000 5 666 1 1 11111 55 4 00 66 4 999 4 4 1 00 1 0 1 2 33 1 1 1 1 99999 555 55 77 5 99 5 5 5 1 000 5 4 88888 0 555 1 1 0 3 1 99999999999 3 111 44 22 6 77777777777777777777 1 4444 88 22 0 4 1 6 1 1 1 4 1 1 1 6 44 5 1 1
lowQualScore : . .. . .. . ... ..... . ........ . . . .. ...... . . ... . .. . .. . . . .. ...... . . . .. .......................... . .. .... . . . . .... . ......... . . ......... . ...... . . .. .. . .. .. . .............. . . . . ............................................. .... . . ... .... .. . .... . . ......................... . . ...... . ...... ... .. . . .... . .. . . ..... .. .. .... . . . ....... ..... ..... . . . ... . ....... . . .. . .. . ..... . ... . . ..... .. . .. .. . ... . . . .. . . . . .. . . . . ..... ... .. .. . .. . . . . ... . . ..... . ... . . . . . ........... . ... .. .. . .................... . .... .. .. . . . . . . . . . . . . .. . . .
lowQualScore : 0 66 4 88 0 888 22222 8 88888888 7 7 7 44 111111 9 4 000 0 99 1 77 0 7 0 44 666666 0 0 0 00 00000000000000000000000000 0 99 1111 8 0 9 6 6666 2 111111111 9 4 999999999 7 999999 7 1 99 88 4 00 00 0 22222222222222 2 8 2 0 777777777777777777777777777777777777777777777 0000 2 0 888 2222 88 0 2222 5 8 2222222222222222222222222 0 2 222222 0 555555 222 00 9 0 4444 7 77 1 0 77777 77 99 1111 6 0 0 1111111 33333 88888 7 0 0 000 0 5555555 2 0 44 2 99 0 00000 8 222 0 0 99999 55 0 33 11 0 333 4 4 0 22 0 0 1 2 88 2 0 4 6 99999 111 77 99 7 77 7 7 7 0 000 7 0 77777 4 666 0 9 3 3 7 00000000000 0 777 22 22 7 88888888888888888888 0 2222 33 88 7 2 0 7 0 0 3 2 0 0 0 7 33 5 0 0
consensus : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCAAGAAT-ACTACTTGACGTATTTGAATATTGTGAGAAACAAATAACCAAG-----GATA-AC-TTTTA-ATTNTCC--G-ATTTTGAAAAAGCTTTTGATTCTGTCGAATGGAA---TTTCNTG--TTTAA--AGCNCTA-AAAAAATTTAATTTTGGATGAAAA-TTTTAT--A-A-A-TGGATTAAA-AT-NCTAT-A-TA-TAA--CAA-CT--TTC----TTCANA--TTAAAAAAT---AATGGNTGGATNTCNAAAACA----CGTAAAATG-A-G-TCGCGTGGAATTAGA---------CAAGGCTGTCC-----TATCTCNGC--GATGATTTTTCTTT--TCGTTGTAGAAATACTAGCAATTCGACTGCGTCAAAATAATGACGAAATA--CGGT-------CA-GGT-AT-ATACCAA---TG---AAGAA-TAAAAA-CG-TACAACACGCNGACGATT-T-AACATTA-CTGT--TAAAAGATA-TAA--CGTCTATGAAA-A--AGCGATT----GCT---AATGAAANCAATA----AATTTNGT-----GAATA-CGCANGGTCTAAAACTTAATCAT-GANAAAACCG--AATGTATNCTTCTT----GGANGTTTAA--AAG----ATAG-TNTC-----GAAGA-A---ATTN-G--TGGTA-TA-AAA---GT-AACTAAT--AAAG-CG-GTTAAATGCCTAGGNGTA-----TATTT--AGGNCATGATANAGACGAA-T--GT-TATAAC-AAAAATTGGAC-GA-AAANT-TAT-AACGANATGGAAAAAA-TNTTTGA-GTCGTGGAAAAAGAGAAAA--TTAACTNTATTCGGAAAA-NC-TTGTA-T-ATAAA--CA--C-CTGCNATTT-CAAAATTA-A-TNT---A-TGCATCCT-CA-ATCTTAC-NTATNCCTGATGAAAATTT-CATAAAAAGTAT-AAACAAACTTATTTTTAATTTTATTTGG---AACAAAANTGATTAGGATTAAAAGGAATACTTTGATTGG--CTAATA--A----C----AGAAGGNGGTAT-TGGGTG--TTGTCNGACGTATNTTCA-AAANTNAAAGCTATTAAANCNTCNTGGGTACAAAGAATCTGTAACGAAGGGGTTATTAANAGNTTTTG
Reference ( family-2599 ) : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCAAGAAT-ACT-CTTGACGTATTTGAATATTGTGAGAAACAAATAACCGAG-----GATA-AC-TTTTA-ATTTTCC--G-ATTTTGAAAAAGCTTTTGATTCTGTCGAATGGAA---TTTCNTG--TTTAA--AGCNCTA-AAAAAATTTAATTTTGG-TGAAAA-TTTT-T--A-A-A-TGGATTAAA-AT-NCTAT-A-TA-TAA--CAA-CT--TTC----TTCANA--TTAAAAAAT---AATGGNTGGATNTCNAAAACA----CGTAAAATG-A-G-TCGCGTGGAATTAGA---------CAAGGCTGTCC-----TATCTCNGC--GATGATTTTTCTTT--TCGTGGTAGAAATACTAGCAATTCGACTGCGTCAAAATAATGACGAAATA--CGGT-------CA-GGT-AT-ATACCAA---TG---AAGAA-TAAAAA-CG-TACAACACGCNGACGATT-T-AACATTA-CTGT--TAAAAGATA-TAA--CGTCTATGAAA-A--AGCGATT----GCT---AATGAAANCAATA----AATTTNGT-----GAATA-CGCANGGTCTAAAACTTAATCAT-GANAAAACCG--AATGTATNCTTCTT----GGANGTTTAA--AAG----ATAG-TNTC-----GAAGA-A---ATTN-G--TGGTA-TA-AAA---GT-AACTAAT--AAAG-CG-GTTAAATGCCTAGGNGTA-----TATTT--AGGNCATGATANAGACGAA-T--GT-TATAAC-AAAAATTGGAC-GA-AAANT-TAT-AACGANATGGAAAAAA-TNTTTGA-GTCGTGGAAAAAGAGAAAA--TTAACTNTATTCGGAAAA-NC-TTGTA-T-ATAAA--CA--C-CTGCNATTT-CAAAATTA-A-TNT---A-TGCATCCT-CA-ATCTTAC-NTATNCCTGATGAAAATTT-CATAAAAAGTAT-AAACAAACTTATTTTTAATTTTATTTGG---AACAAAANTGATTAGGATTAAAAGGAATACTTTGATTGGTTCTAATA--A----C----AGAAGGNGGTAT-TGGGTG--TTGTCCGACGTATNTTCA-AAANTNAAAGCTATTAAANCNTCNTGGGTACAAAGAATCTGTAACGAAGGGGTTATTAANAGNTTTTG
gi|1 : CAAGATG-GCTACTTGATGTTTTTGA------T-----ACAAATAAT-GAG-----GGTATAC-TTTTA-ATGTTA---G-ATTTTGAAAAGGCGTTTGATGCTGTAGAGTGGAA---CTTTGTG--TTTAA--GGTGTTG-AAAAATTTTAAATTTGG-TGAAAA-TTTTAT--A-ACA-TGGATTAAA-AT-ATTAT-A-CACTAA--CA--CT--TTC----TTTAAA--TTAAAGAAC----------GGATTTC--AGTCA----TGTAGAATG-T-A-T---GTGGAAT-AGA---------CAGGGATGTCC-----TCTTTCCGC--TAT--TTTATATTTATTTGTG-T-GAGATACTAGC--TTTGA--GTAT-AAAACAA-GAC-AAATA--CAAT-------TAAGGT-ATTATACCAAATATGTTCAAGAAATAAAAAACA-TTCAGCACGCTGATGATC-T-AACATTAACTGT--TAAAAGATA-TAA--C-TTTATGAAG-ACAAGCGATTTGGCGTT---ACT---AGCAA-A----AGTTTTGTTCAGCGAAT---GCAGGGTCCAAA--TTAATTAT-ACTAAAACTG--AATGTATCCTTCTT----CGACGTCTAA--AGA----ATAG-TGTC-----AAAGA-A---ATTA-G--TGGCG-TA-AAA---AC-GACTAAT--AAAG-CA-GTAAAATGTTTAGGAATA-----TACTT--CGGTCATGATACAATTGAT-T--GT-TACGAT-AAAAATTGGAT-GA-AAACT-TAT-CATGACATGGAAAAAA-TGTTCGA-GTCATGGAAGAAGAGGCGA--CTGACTTTATTTGGCAAA-AC-TTGTATT-ATAAATTCT--C-CTGCGATTT-CAAACTTT-A-TTT---A-TGTTGCCT-CA-ATTTTAC-CTATTCCTGATGAAAATCT-TTTGAAAAATATAAAACGTAC-TATTTTTAATTTTCTTTGG---AATAAGACTGA-CAGGATTAAAAGGAATACTTTGATTGG---CAATGTTT----C----AGAGGGAGGTAT-T-GGTG--TTGT-AGATATATATTTA-AAAATTAAAGCTATTAAAGCCTCCTGGATACAAAGAATCAGTAACAAAGGGGTTA-TAAAAGTTTTTG
gi|10 : catatataaagggtaggattattggtgaaaatgAT-AC--CTAGACATATTTGAATATTGTGAGAAACAA-TAACCAAA-----GATA-AC-TTTTA-ATTATCC--A-ATTTTGAGAAAGCTTTTGATTCTGTCGAAGGAAA---TTTCCTC--TTTAAACAGCTTTA-AGAAAATTCAATTTTGGATAAGAA--TTT-T--A-A-A-TGGATCAAATAT-TCTATAA-TA-TCC--CTA-AT--TT-----TTCGCA--TAAAAAAAT----ATGGATGGATCTCTAAAACA----CTTAAAATG-ACC-TCGCGTGGAATTAGA---------CAAGGCTGTCC-----TATCTC-GC--Gt
gi|11 : attaaaggcgatacatcggagaaaaatgctcgtttgAT-AC--CTAGACATATTTGAATATTGTGAGAAACAA-TAACCAAA-----GATA-AC-TTTTA-ATTATCC--A-ATTTTGAGAAAGCTTTTGATTCTGTCGAAGGAAA---TTTCCTC--TTTAAACAGCTTTA-AGAAAATTCAATTTTGGATAAGAA--TTT-T--A-A-A-TGGATCAAATAT-TCTATAA-TA-TCC--CTA-AT--TT-----TTCGCA--TAAAAAAAT----ATGGATGGATCTCTAAAACA----CTTAAAATG-ACC-TCGCGTGGAATTAGA---------CAAGGCTGTCC-----TATCTC-GC--G
gi|13 : attaaaggcgatacatcggagaaaaatgctcgtttgAAGAATCATC-CTTGA----TTTAA---TTGTGAAATTCAAATGACCC-T-----CATA-TC-TTGTT-ATTCTGT--G-ACTTTGAAAA-GTTCTTGA--CTGTAGAATGAGAGGTTTTTTTAAATTTAA--AACACTG-ACAAAATTTAATTATAG-TGAAAA--ATT-T--A-G-A-TGGATTAAA-AT-
gi|14 : gatattggatttagtgtAG-TTT------GAAGA-A---CTTT-T--TGGTA-TT-GAA---GT-AACAAAT--AGAG-CG-ACTAAATGTCTA--TGTA-----TCTTTCTACGCCATGATAAAGAAGAA-T--GT-TATATC-AAAAATTGGAT-GA-AAATA-TAC-AACGAAATGGAAA
gi|15 : TAAAAAAT---AATGGATGGATATCCAAAACA----TGTTCAATG-A-A---AAGAGGAATTAGA---------TAAGGCTGTCC-----AATTTCAGC--GATAATTTTTCTTT--TCGTTGTAGAAATAt
gi|16 : ccctatattccgcaTTTAATTTTGG-TGATAA-TTTTAT--A-A-AGTGGATAAAT-AT-ACTAT-A-TA--AA--GAATCT--ATC----TTTAGA--TTAAAAAAT---AATGGGTGGATGTCAAAAACA----AGTAAAatgtca
gi|2 : -TTTTACATTTTTG--GGATTTTCAAAAAGCTTTTGATTCAGTCAAATGGAA---CTTTATG--TTTGA--AACCTTA-AAGCGATTTAACTTTGG-AGAAAACTTTT-T--GCA-A-TGGATTCCA-AT-ACTAT-A-TA--AA--CAA-CCAATT-----TTTAAG--CTAAAAAAT---AATGGGTGGATTTCCAAA--A----CGT---------G-TCACATGGAA--AGAAGCATACGGCAGGGCTGCCC-----GATATCTTC--GATGATATTCCTCT--TCGTTGCAGAAATCCTATCAA----------TCAAAATAATGcatagaa
gi|2 : gaattacgacggaGGCA-TA-AAG---GTTAACCGAG--ACTG-CA--TTAAAGTCTTGGGAATT-----TATAT--AGATCATGATATAGAGAAA-T--GTATAGAAA-AAAAATGGGGA-AACAAAAT-TA--AA-GAACTCGAGAGAC-TCTTTGA-ATCATGGAAAAAAAGAAAA--TTAAGTATTTTCGGAAAA-AC-GTGTA-TCATAAA--CAATT-TTGCTATAT-TAAAATTA-A-TAT---A-CA-ATCTTACA-CTCCTAC-CTTACCCTAGTGCTGATAT-TATCAAAAACAT-AAATAGATTGATTTTCAATTTCATTTGG---AACAAAAGGGA-TAGAATAAAGTGAAAAACTTTAAAAGGGGCCACTA--AG---C----AG--GGTGGCATATGG--G--TTAT-AGACGTAGAGTCA-AAAGCAAAAGCAATAAAATGTTCCTGGATAtctaaccgtgagattctgtgatttaaaacgtcaaagatgtccacagacataaacttgatacagcacgccgatgttgctacgctcgcactacgcgacgaaaaagcattacaactagcaatcacctgcataaagaacttcggaaacatttctggattaattttaaatgtaaaccaaacagaatgcttgttattaggctctctgaaagattcagtccgtgttttacacggcataaaggttaaccgagactgcattaaagtcttgggaatttatatagatcatgatatagagaaatgtatagaaaaaaaatggggaaacaaaattaaagaactcgagagactctttgaatcatggaaaaaaagaaaattaagtattttcggaaaaacgtgtatcataaacaattttgctatattaaaattaatatacaatcttacactcctaccttaccctagtgctgatattatcaaaaacataaatagattgattttcaatttcatttggaacaaaagggatagaataaagtgaaaaactttaaaaggggccactaagcagggtggcatatgggttatagacgtagagtcaaaagcaaaagcaataaaatgttcctggata
gi|3 : gaattacgacggattttacatttttgggattttcaaaaagcttttgattcagtcaaatggaactttatgtttgaaaccttaaagcgatttaactttggagaaaactttttgcaatggattccaatactatataaacaaccaatttttaagctaaaaaataatgggtggatttccaaaacgtgtcacatggaaagaagcatacggcagggctgcccgatatcttcgatgatattcctcttcgttgcagaaatcctatcaatcaaaataatgtctaaccgtgagattctgtgatttaaaacgtcaaagatgtccacagacataaacttgatacagcacgccgatgttgctacgctcgcactacgcgacgaaaaagcattacaactagcaatcacctgcataaagaacttcggaaacatttctggattaattttaaatgtaaaccaaacagaatgcttgttattaggctctctgaaagattcagtccgtgttttacacCAAGAAT-ACTACTTGAAATATTTGAATATTGTG-----CAATTAATCAGGATTTTGATG-GCATTTTA-CTTTTCCTAG-ATTTTGAAAATGCTTTTGATTCTGTTGAATATGA---TTTCATG--TACAA--AACTCTAGAAAAAATTCGATTTTGG-TGAAAA-TTTTATCAA-A-A-TGA--TAAA-ATCACTAT-ATTC-CAAGCCAA-TT--TTCAA--TTCAAGTTTTAAAAAATCACAACGGTTGGGTGTCTAAATCATGTGCATGAAATGCA-GATCAAGAGGCATTAGA---------CAAAGATGTCCTGTGTTATCACTACTACATG-TATTTATTT--TCATGTTAGAAATACTAGCAGTTCCACTG---AAAAATAATGACGAAATACTCGGTCTATCGCCA-GGTGATGATACTAA---TG---AAAAATTAAAAATCG-TGCAACATGCAGATGATTGTAAATATT---TGT--TAAAAGATAGTAATTCGT---TGAAA-A-----------------------AAAACAATAGGTGGATTTAGT------AATGTCGCA-GGCCCGAAATTGAATTTG-GATAAAACAG--AATG----CTTATTGACAGGAAGTCTTATTGAG----AT-G-TATCTAAATGAAGA-ATATATTT-G--TGGTGTTA-AAA---TT-GA-TACA--AAAA-TACGTAAAATCAATAGGTGCA-----TATTT--AGGACATGATAAGGAT--A-TTAGC-TATGAA-ATGAACTGGAC-AA-
gi|4 : tcatatgaataaaggttctacatATT-AC-TTTTA-CT----C--G-ATTTTCAAAGAGCATTTGATTCCGTCGAATGGTC---TTTTATG--AT-AA--AGCACTC-AAGTTCTTTAGGTTTGGACAAAAA-TTCA-C--C-A-A-TGGATTCAA-AT-TTTGT-A-T--TAA--AAG-C-----CAGAATTTAGA--CTAAAAAAT---AATAATTGACTGTCAAAAACA----TGTAAAGTG-A-G---GCGGGGAATTCGT---------CAAGGATGTTC-----GATATCAGC--GATGATTTTTCTAT--TTGTTGTTGAAGTATTGGCAATTAGATTACGTCGA---AATGACACAAT------T-------CATGGT----------------------AG-TAAAAA-CATTACAACATGCTGACGATT-C-TACATTA-CCTT--TGAGGGACA-TTA--CGTCTGTAAAATC--AGCGAT-------T---AATGAAATCAATA----CTTTCAGC-----AAATA-CTC-TGGTATGAAATTAAACCTT-TCAAAAACAG--AGCGCATTTTATTA----GGACCATTAA--AAGGCCAACAGATACA-----GACGG-C---ATTA-C--T-GTA-TA--------T-GAC---------G-CG-------TGCGTAAAGGTAATAGGTATTC----GGCATGATAAAGATTTA-T--GT-TTTAAA-AATAATTGGAC-CA-AAAAG-ATT-GATGATATAGAAAAGC-TGTTTTA-ATCGTGTAAAAA-ATAAAG--TTAA
gi|5 : aatAAGGTTTAAAACTTAATCAT-AAGTAAACCGGAAATA-ATACTTCTG----GGATCTTTAA--AAG----GAAG-TTTT-----TGATATA---ATTA-GAAGGGAA-TA-AAA---GT-AA--AATGAAAAGACA-GTTAAATGCCTGGGTGTA-----T-TTT--AGGACATGAATGAAACAAGGT--GT-TATAACTCAGAATTGGAT-GA-AAGGTATAT-AATAATATGGGAAAAACTTTTTGATGTCGTGGAAAAAGAGAAAAGCTTTACTATATTTGAAAAA-TG-TTGTA-T-ATAAA--CA--C-CTGCT-TTT-CAAAATTA-A-TTTTACA-TGCATCCT--A---CTTA--ATATGCCAAATGAAAAGTTACATAAAAAGTAT-TAACAAACTTATTTTTAACTTTATTTGG---AACAAAACTGATTAGAATTAAAA-GAATACATTGATTGGTTCTAATA--A----C----AAAATGTGGTAT-TGAGTGGTTTGTCCGATGTGTTTTCA-AAACTGAAAGCT-TTGAAACATCATGGGT
gi|6 : AAGGTTTAAAACTTAATCAT-AAGTAAACCGGAAATA-ATACTTCTG----GGATCTTTAA--AAG----GAAG-TTTT-----TGATATA---ATTA-GAAGGGAA-TA-AAA---GT-AA--AATGAAAAGACA-GTTAAATGCCTGGGTGTA-----T-TTT--AGGACATGAATGAAACAAGGT--GT-TATAACTCAGAATTGGAT-GA-AAGGTATAT-AATAATATGGGAAAAACTTTTTGATGTCGTGGAAAAAGAGAAAAGCTTTACTATATTTGAAAAA-TG-TTGTA-T-ATAAA--CA--C-CTGCT-TTT-CAAAATTA-A-TTTTACA-TGCATCCT--A---CTTA--ATATGCCAAATGAAAAGTTACATAAAAAGTAT-TAACAAACTTATTTTTAACTTTATTTGG---AACAAAACTGATTAGAATTAAAA-GAATACATTGATTGGTTCTAATA--A----C----AAAATGTGGTAT-TGAGTGGTTTGTCCGATGTGTTTTCA-AAACTGAAAGCT-TTGAAACATCATGGGT
gi|7 : AAATTAATTAT-GCTAAAACTG--AATGTATCCTTCTT----GGAAGTTTAA--AGA----ATAG-TGTC-----AAAGA-A---ATTC-G--TGGCA-TA-AAA---AC-GACTGGT--AAAG-CA-ATAAAATGTTTAGGAATA-----TACTT--CGGTCATGATACAATTGAT-T--GT-TACCAT-AAAAATTGGAT-GA-AAACT-TAT-CATGACATGGAAAAAA-TGTTTGA-GACATGAAAGAAAAGGCAA--CTAACTTTATTTGGCATA-AC-TTGTATT-ATAAATTCT--C-TTGCGTTTT-CTAAATTT-A-TTT---A-TGTTGCCT-CA-ATTTTAC-CTATTCCTGATGAAAATCT-TTTGAAAAATAT-A---AAAC------------------GG---AATAAGAATGA-CAGGATTAAAAGGAATACTTTGATTGG--CTA--A--ATGTTT----AGAGGGATGTA----GGTG--TTGGTAGATATATATTTA-AAAATTAAAGCTATT-AAGCCTCTTGGATACAAAGAAT-TATAGTCAAAGGGTTATTAATAGATTTTG
gi|8 : -TAAAAG-TG-TACAACGCTCAGACGATT-T-ATCA--G-CTGCGGTAAAAGATG-AAA--TATCTATGAAA-A--A-----T----GCCCTAAATGAAATCAATA----AATTTTGT-----GAATA-TGCTCGTTCTAAAA-TTAAT-ATCGACAAAACCG--AATGTATTTTGCTT----GGAAGGTTGC--AAA----ATAA-GTTT-----GAAGA-A---CTTT-T--TAGTA-TT-ACA---GT-AACAAAT--AGAG-CG-ACTAAATGTCTAGGTATC-----TTTCT--AGGTCATGATAAAGAAGAA-T--GT-TATATC-AAAAATTGGAT-GA-AAATA-TAC-AACGAAATGGAAAAAT-TGTTTGA-ATCCTGGAAAAGAAGAAAA--TTAACACTTTTTGGTAAA-GC-ATGCA-T-AATAA--CA--C-TTGCCATTT-CAAAATAA-G-TAT---A-TGTATCTT-CA-ATATTGT-GTTTTCCTGATAAAGA
gi|9 : gaaat-A---ATTATA--TGGTA-TACAAATTTAT-AACTAAT--GCAC-CG-ATTAAATGTTTAGGAATA-----TATAT--AGGGCATGCTATTAACCAA-T--GC-TACATT-AAAGATTGGACGGA-AAAAT-GATAAACTAGA--GAGAAAA--CTTACA-AT-ATGGAACACGAGAAAA--TTGACTTTATACGGAAAATGCACTGTA---ATGAA--CA--CTTTGGCATTGACACAATTATACTAT---AGTGCAT-----ATATTTTGTAATATCCCGGA--AAAATTT-CATAAACAG---------------TTTTCAATTTTCTTTGGGGCAACAGAAA--AC--GGATAAAAAGAAATACTTTGATTGG----AA-A--A----CAAGAAGAAGGAGGGA--TAGGCA--TTGT-TGACAT-TGTTTGTAAATTAAAAGCGCTTAAATCGGCATGGGTAAAACGAATCTGTAATGAA
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|12 ): AGAAAGCTTAATGCTAATAAAATAATGTGTAATCGTGAGATTCTGGGATTTAAAACGTCAAAGATGTTCGCAGACATAACATTGATACAACATGCTGACGATACTACGCTCGCATTACACGACCAAAAAGCATTACAATTAGCAATCACTTGTATAAAGATCTGAATTAATTCTAACTGTTAACAAATACATACTGTGTTA