lowQualScore : 6 2 5 7 66666 2 4 888888
lowQualScore : . . . . ..... . . ......
lowQualScore : 4 1 6 5 33333 0 6 999999
consensus : AAGAGCAATCAG-AGATTTCT----GACCT-CCGCCANGGT------TACATTAAAGTC
Reference ( gi|20 ) : AAGAGTAATCAG-AGGTTGCT----GACCT-CCGCCAAGGT------TACATTAAAGTC
gi|17 : AAGAACAATCAG-AGATTGCT----AATCT-CTACCAAGGT------TGCATTTAAGTC
gi|18 : AAGAGCAATCAG-ATATTTCT----GACCT-TCGCCATGGTTA----TACATTAAAGTCtcgta
gi|9 : AAGAACAATCAG-AGATCGCA----GACCT-CCACCAATGT------TACATTATAGTCt
gi|5 : AAGAGCAATCAG-GGATTTCT----GACTT-CCGCCAATGTTACATCTACATTAAAGTCttctggatg
gi|4 : AAGAGCAATCAG-AGACTGCA----CACCT-CCAACAAGGT------TACAATAAAGTttttgg
gi|1 : cAAGAGCAATCGG-ATATTGCA----GACCTCCCGCCAAGGG------TACATTAAtttcaggatcca
gi|12 : AGGAGCATTCGG-AAATT-CT----GACCG-CCGCCATGGT------TACATTAAAGTCttactgaatatcttctggatcca
gi|3 : aaacAAGAGCAATCAG-AGGTTTTTTTCAGACCT-CTGCCATGTT------CACATTAAAGTtttagg
gi|16 : acAAGAACAATCAG-A--TTTCT----AACCT-CCGCTACGGT------CACATTAATGTCattctggatc
gi|7 : agcAAGTGAAATTAG-AGATTTCT----GATC----ACCATGGT------TACATTAAAGTttttg
gi|23 : aacAAGAGCAATCGG-AGATTTCT----GACCT-CTGCTAttctggatcca
gi|13 : aaacAGGGGCATTCAG-AGATTTTG----GACCA-CTGCTTTGGT------TTCATTAAAGTCtg
gi|15 : tacAGAGCAATCAG-AGATTTTT----GACCT-CCGCCGAAGT------TTCATTAAAGTCcttt
gi|10 : cgAGAGCAATCAA-AGATTACA----GACCT-CCGCCAAGGT------TATGTCAAAGttctg
gi|11 : GAGAAATCAG-AGATTACA----TACCT-CCACCATTGT------TAAATTAAAGTCgcttcaggatcc
gi|14 : acGTGATCAG-AGATTGCA----TACCT-CCGCCATGGT------TACATTAAAATttctggatc
gi|6 : GCAATCAG-ACATTGCA----GACCT-CTGCTAAGGT------TACATTATAGTCgttctggatcc
gi|2 : AATCGGGAGATTTCT----GACCC-CTGTCATGGT------TACATTAAAttctggatccagacc
gi|19 : acgaagccAG-AGATTTCT----GACTT-CCGCCATGGT------TACATTAtaacagtcttctggatccc
gi|22 : aACCC-CCGCCAAGGT------TACACTAAAGTCgtcttctgcatccga
2 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|8 ): AGCAGTCAGAGATTACAAGCTGAATGTTACATTAAGCTTCTGATCCCAGGATCCAGA
Unaligned ( gi|21 ): ACGATTGAAGAAAACAGAGAACCCTTCACCCAACCGAAGTTATATCT
Alignments
lowQualScore : 2 4 55555 1 1 888888
lowQualScore : . . ..... . . ......
lowQualScore : 0 5 66666 9 0 555555
consensus : AAGAGCAATCAG-AGATTNCT----GACCT-CCGCCANGGT------TACATTAAAGTC
Reference ( family-2465 ) : AAGAGCAATCAG-AGATTTCT----GACCT-CCGCCANGGT------TACATTAAAGTC
gi|1 : AAGAGCAATCGG-ATATTGCA----GACCTCCCGCCAAGGG------TACATTAA
gi|10 : AGAGCAATCAA-AGATTACA----GACCT-CCGCCAAGGT------TATGTCAAAGttactgaatatcttctggatcca
gi|11 : GAGAAATCAG-AGATTACA----TACCT-CCACCATTGT------TAAATTAAAGTCgcttcaggatcc
gi|12 : acAGGAGCATTCGG-AAATT-CT----GACCG-CCGCCATGGT------TACATTAAAGTCttctggatc
gi|13 : aaacAGGGGCATTCAG-AGATTTTG----GACCA-CTGCTTTGGT------TTCATTAAAGTCtttagg
gi|14 : tacATCAG-AGATTGCA----TACCT-CCGCCATGGT------TACATTAAAATcttt
gi|15 : gtgAGAGCAATCAG-AGATTTTT----GACCT-CCGCCGAAGT------TTCATTAAAGTCgttctggatcc
gi|16 : cgAAGAACAATCAG-A--TTTCT----AACCT-CCGCTACGGT------CACATTAATGTCttctg
gi|17 : agcAAGAACAATCAG-AGATTGCT----AATCT-CTACCAAGGT------TGCATTTAAGTCttttg
gi|18 : AAGAGCAATCAG-ATATTTCT----GACCT-TCGCCATGGTTA----TACATTAAAGTCtcgta
gi|19 : AG-AGATTTCT----GACTT-CCGCCATGGT------TACATTAt
gi|2 : aCAATCGGGAGATTTCT----GACCC-CTGTCATGGT------TACATTAAAgtcttctgcatccga
gi|20 : acgaagcAAGAGTAATCAG-AGGTTGCT----GACCT-CCGCCAAGGT------TACATTAAAGTCtaacagtcttctggatccc
gi|22 : ACCC-CCGCCAAGGT------TACACTAAAGTC
gi|23 : catAAGAGCAATCGG-AGATTTCT----GACCT-CTGCTATGttctggattcagga
gi|3 : aaacAAGAGCAATCAG-AGGTTTTTTTCAGACCT-CTGCCATGTT------CACATTAAAGT
gi|4 : acAAGAGCAATCAG-AGACTGCA----CACCT-CCAACAAGGT------TACAATAAAGTattctggatc
gi|5 : cAAGAGCAATCAG-GGATTTCT----GACTT-CCGCCAATGTTACATCTACATTAAAGTCtttcaggatcca
gi|6 : GCAATCAG-ACATTGCA----GACCT-CTGCTAAGGT------TACATTATAGTCttttgg
gi|7 : AAGTGAAATTAG-AGATTTCT----GATC----ACCATGGT------TACATTAAAGTttctggatccagacc
gi|9 : aacAAGAACAATCAG-AGATCGCA----GACCT-CCACCAATGT------TACATTATAGTCttctggatcca
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|8 ): AGCAGTCAGAGATTACAAGCTGAATGTTACATTAAGCTTCTGATCCCAGGATCCAGA
Unaligned ( gi|21 ): ACGATTGAAGAAAACAGAGAACCCTTCACCCAACCGAAGTTATATCT
Alignments
lowQualScore : 2 3 55555 1 1 888888
lowQualScore : . . ..... . . ......
lowQualScore : 0 0 66666 9 0 555555
consensus : AAGAGCAATCAG-AGATTNCT----GACCT-CCGCCANGGT------TACATTAAAGTC
Reference ( family-2465 ) : AAGAGCAATCAG-AGATTNCT----GACCT-CCGCCANGGT------TACATTAAAGTC
gi|1 : AAGAGCAATCGG-ATATTGCA----GACCTCCCGCCAAGGG------TACATTAA
gi|10 : AGAGCAATCAA-AGATTACA----GACCT-CCGCCAAGGT------TATGTCAAAGttactgaatatcttctggatcca
gi|11 : GAGAAATCAG-AGATTACA----TACCT-CCACCATTGT------TAAATTAAAGTCgcttcaggatcc
gi|12 : acAGGAGCATTCGG-AAATT-CT----GACCG-CCGCCATGGT------TACATTAAAGTCttctggatc
gi|13 : aaacAGGGGCATTCAG-AGATTTTG----GACCA-CTGCTTTGGT------TTCATTAAAGTCtttagg
gi|14 : tacATCAG-AGATTGCA----TACCT-CCGCCATGGT------TACATTAAAATcttt
gi|15 : gtgAGAGCAATCAG-AGATTTTT----GACCT-CCGCCGAAGT------TTCATTAAAGTCgttctggatcc
gi|16 : cgAAGAACAATCAG-A--TTTCT----AACCT-CCGCTACGGT------CACATTAATGTCttctg
gi|17 : agcAAGAACAATCAG-AGATTGCT----AATCT-CTACCAAGGT------TGCATTTAAGTCttttg
gi|18 : AAGAGCAATCAG-ATATTTCT----GACCT-TCGCCATGGTTA----TACATTAAAGTCtcgta
gi|19 : AG-AGATTTCT----GACTT-CCGCCATGGT------TACATTAt
gi|2 : aCAATCGGGAGATTTCT----GACCC-CTGTCATGGT------TACATTAAAgtcttctgcatccga
gi|20 : acgaagcAAGAGTAATCAG-AGGTTGCT----GACCT-CCGCCAAGGT------TACATTAAAGTCtaacagtcttctggatccc
gi|22 : ACCC-CCGCCAAGGT------TACACTAAAGTC
gi|23 : catAAGAGCAATCGG-AGATTTCT----GACCT-CTGCTATGttctggattcagga
gi|3 : aaacAAGAGCAATCAG-AGGTTTTTTTCAGACCT-CTGCCATGTT------CACATTAAAGT
gi|4 : acAAGAGCAATCAG-AGACTGCA----CACCT-CCAACAAGGT------TACAATAAAGTattctggatc
gi|5 : cAAGAGCAATCAG-GGATTTCT----GACTT-CCGCCAATGTTACATCTACATTAAAGTCtttcaggatcca
gi|6 : GCAATCAG-ACATTGCA----GACCT-CTGCTAAGGT------TACATTATAGTCttttgg
gi|7 : AAGTGAAATTAG-AGATTTCT----GA----TCACCATGGT------TACATTAAAGTttctggatccagacc
gi|9 : aacAAGAACAATCAG-AGATCGCA----GACCT-CCACCAATGT------TACATTATAGTCttctggatcca
blockSeqs : G A TTTCA . A TACATC
blockSeqs : . A A . T TA
blockSeqs : . T A . T .
blockSeqs : . G T . T .
blockSeqs : . T G . T .
blockSeqs : . T A . A .
blockSeqs : . G T . C .
blockSeqs : . T T . A .
blockSeqs : . T T . T .
blockSeqs : . T T . T .
blockSeqs : . G T . T .
blockSeqs : . T T . A .
blockSeqs : . T T . A .
blockSeqs : . G T . T .
blockSeqs : . T A . T .
blockSeqs : . G T . A .
blockSeqs : . T A . A .
blockSeqs : . G T . A .
blockSeqs : . . A . T .
blockSeqs : . A
blockSeqCons :
originalCons : AAGAGCAATCAG-AGATTNCT----GACCT-CCGCCANGGT------TACATTAAAGTC
finalCons : AAGAGCAATCAG-AGATTNCT----GACCT-CCGCCANGGT------TACATTAAAGTC
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|8 ): AGCAGTCAGAGATTACAAGCTGAATGTTACATTAAGCTTCTGATCCCAGGATCCAGA
Unaligned ( gi|21 ): ACGATTGAAGAAAACAGAGAACCCTTCACCCAACCGAAGTTATATCT
Alignments
lowQualScore : 2 3 55555 1 1 888888
lowQualScore : . . ..... . . ......
lowQualScore : 0 0 66666 9 0 555555
consensus : AAGAGCAATCAG-AGATTNCT----GACCT-CCGCCANGGT------TACATTAAAGTC
Reference ( family-2465 ) : AAGAGCAATCAG-AGATTNCT----GACCT-CCGCCANGGT------TACATTAAAGTC
gi|1 : AAGAGCAATCGG-ATATTGCA----GACCTCCCGCCAAGGG------TACATTAA
gi|10 : AGAGCAATCAA-AGATTACA----GACCT-CCGCCAAGGT------TATGTCAAAGttactgaatatcttctggatcca
gi|11 : GAGAAATCAG-AGATTACA----TACCT-CCACCATTGT------TAAATTAAAGTCgcttcaggatcc
gi|12 : acAGGAGCATTCGG-AAATT-CT----GACCG-CCGCCATGGT------TACATTAAAGTCttctggatc
gi|13 : aaacAGGGGCATTCAG-AGATTTTG----GACCA-CTGCTTTGGT------TTCATTAAAGTCtttagg
gi|14 : tacATCAG-AGATTGCA----TACCT-CCGCCATGGT------TACATTAAAATcttt
gi|15 : gtgAGAGCAATCAG-AGATTTTT----GACCT-CCGCCGAAGT------TTCATTAAAGTCgttctggatcc
gi|16 : cgAAGAACAATCAG-A--TTTCT----AACCT-CCGCTACGGT------CACATTAATGTCttctg
gi|17 : agcAAGAACAATCAG-AGATTGCT----AATCT-CTACCAAGGT------TGCATTTAAGTCttttg
gi|18 : AAGAGCAATCAG-ATATTTCT----GACCT-TCGCCATGGTTA----TACATTAAAGTCtcgta
gi|19 : AG-AGATTTCT----GACTT-CCGCCATGGT------TACATTAt
gi|2 : aCAATCGGGAGATTTCT----GACCC-CTGTCATGGT------TACATTAAAgtcttctgcatccga
gi|20 : acgaagcAAGAGTAATCAG-AGGTTGCT----GACCT-CCGCCAAGGT------TACATTAAAGTCtaacagtcttctggatccc
gi|22 : ACCC-CCGCCAAGGT------TACACTAAAGTC
gi|23 : catAAGAGCAATCGG-AGATTTCT----GACCT-CTGCTATGttctggattcagga
gi|3 : aaacAAGAGCAATCAG-AGGTTTTTTTCAGACCT-CTGCCATGTT------CACATTAAAGT
gi|4 : acAAGAGCAATCAG-AGACTGCA----CACCT-CCAACAAGGT------TACAATAAAGTattctggatc
gi|5 : cAAGAGCAATCAG-GGATTTCT----GACTT-CCGCCAATGTTACATCTACATTAAAGTCtttcaggatcca
gi|6 : GCAATCAG-ACATTGCA----GACCT-CTGCTAAGGT------TACATTATAGTCttttgg
gi|7 : AAGTGAAATTAG-AGATTTCT----GA----TCACCATGGT------TACATTAAAGTttctggatccagacc
gi|9 : aacAAGAACAATCAG-AGATCGCA----GACCT-CCACCAATGT------TACATTATAGTCttctggatcca
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|8 ): AGCAGTCAGAGATTACAAGCTGAATGTTACATTAAGCTTCTGATCCCAGGATCCAGA
Unaligned ( gi|21 ): ACGATTGAAGAAAACAGAGAACCCTTCACCCAACCGAAGTTATATCT