lowQualScore : 1111111111111111111111111111111111111111111111111111111111111111111111111111111 11111111111111111111111111111111111111111111111 222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
lowQualScore : 11 1111 1111 1111111 11 111 111 3333333333 3 11111 1111111 22222222222222222 444444 333333 11111 11 111 1 11 11 6666666666666 1 2222222 3333333333 111 11 11 7777777777777777777777 1 1 555555 1 11 11 222 11 22 1 11 1 11 11 111 2222 1 1 6666666666666666666666666666666666666666666666666666666666666666666666666666666 11 1 1 1 11 1 111 11 222222 33333333 444444 1 66666666666666666666 55555555555555555555555555555555555555555555555 1 444444 77777 55 44 4 4 66666666666 444444 777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777 1 44444 333 7777 444444 1
lowQualScore : 3 00 4 5 3 3 2222 3 33 6 555 555 1111 3 55 55 3 3 1111111 7 88 3 3 00 000 8 4 111 4 55 4 4 5 8888 88 2 4 4 8 4 4 6666 3 3 3 3 3 3 3 7777 6 7 3 3 55 5555555555 3 3 55 55 7 2 55 44444 4 4 4 6666666 4 777 3 4 4 5 66 55555555555555555 5 88888 5 5 888 444444 0 999999 77777 33 1 777 0 00 33 7 2222222222222 0 3 9999999 3 44 3333333333 777 33 33 55 8888888888888888888888 3 6 7 6 7 2 777777 5 77 88 333 88 11 0 00 0 0 6 44 2 22 6 777 0000 1 3 3 9999999999999999999999999999999999999999999999999999999999999999999999999999999 33 0 9 7 0 8 3 88 2 1 1 0 777 0 11 333333 0 00000000 888888 3 5 99999999999999999999 3 00000000000000000000000000000000000000000000000 7 6 333333 6 88888 55 66 0 0 11111111111 333333 111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111 3 5 00000 555 6666 6 6 333333 5
lowQualScore : . .. . . . . .... . .. . ... ... .... . .. .. . . ....... . .. . . .. ... . . ... . .. . . . .... .. . . . . . . .... . . . . . . . .... . . . . .. .......... . . .. .. . . .. ..... . . . ....... . ... . . . . .. ................. . ..... . . ... ...... . ...... ..... .. . ... . .. .. . ............. . . ....... . .. .......... ... .. .. .. ...................... . . . . . . ...... . .. .. ... .. .. . .. . . . .. . .. . ... .... . . . ............................................................................... .. . . . . . . .. . . . . ... . .. ...... . ........ ...... . . .................... . ............................................... . . ...... . ..... .. .. . . ........... ...... ......................................................................................................................................................... . . ..... ... .... . . ...... .
lowQualScore : 7 77 0 9 3 3 7777 3 77 2 444 444 9999 6 00 00 6 6 9999999 3 66 6 6 00 000 0 0 000 0 55 0 0 4 5555 22 3 5 0 0 0 0 2222 6 6 6 6 6 6 6 7777 0 3 6 6 00 2222222222 6 6 00 00 3 7 00 77777 0 0 0 2222222 4 888 4 4 4 4 99 77777777777777777 7 33333 7 7 333 888888 8 888888 88888 88 2 555 0 22 88 0 5555555555555 0 0 5555555 2 88 8888888888 555 88 88 88 3333333333333333333333 3 0 3 0 7 5 555555 0 55 33 333 33 55 0 22 0 7 0 77 5 55 0 555 5555 0 3 3 3333333333333333333333333333333333333333333333333333333333333333333333333333333 88 0 2 3 2 3 3 33 0 2 2 0 555 6 00 000000 8 22222222 555555 0 5 55555555555555555555 0 00000000000000000000000000000000000000000000000 0 0 000000 0 00000 00 00 0 0 00000000000 000000 555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555 0 5 00000 000 0000 0 0 000000 0
consensus : ATANAAAN-GG-CGAAGTNA-A-CAAT--GTG-TT-AAA-CGTAATCA---TAGTC---C-A--A-A--AA--A-CATA-T--A----CAAAA-TCGA--GT-G-T--AG---G-GCA-A---CACGGACC-T--CC-GA-CGA----AAGCGAAAGGCAGG-A-TC-AG-GTGCC--ATG-GAGG-AGT-A-A-G-CA-T----CCTC-TG-CTG-A--C-C----G---TC-AC-AC--C--C-GCCGTGA--GCCC----TTAGT-CG-AA-A---T---AA-AGTAAAC---GGGGT-TACC-CGTNG--TCAAA-----TCT---------A-GTA--GGAA-A-A-T-GACA-----CTAACAANA----GGGTATGGAACA-AA--TC--AGTC---AAC-ATAT-GACTTA--GTGATAATT-TG------NNA-TCG-CAAACNAGGTC-----GTTATAGCGACCGT--AG------AATTTG---CGAAAT--GAT--GACTTTAAA-CGAGAT-CGT-TG-A--ACC-CTGC-AACATCAAC-TTTTNGTTAGTAGTTGNCCCTCTCTTCGCTTTAAAAAGTCNTCAT--ACGCGTG-CATG--CTCTTGC-GT-ATCG-AA-TCAACTGAGAGACATTACACACCATAAG-CAGGTG---ATAGTGGG-TACATTTCTA-CAT--AGAAG-----AGGAAA--GTTG-ACGTACTGCATTGGTCCGAGNGTCAGAGTTCAATATTCANGTTT-----ATNA-TAT--AA-ATGTAGTTGTCAGACTGCC-GTTAG--AGTCAATATTAAG-TAAAAT---ATCCAAATATGAAGCAGATAT--GTCAG------ATTCTGTGGTGTCCTTTA----TA--TCGAGTAAAATCNTCGGGATATATNAANATGGACATGCTTATGAAAATTNTGATTGTNNNNNNNNNNNNNNNNNTCTAATATAGCCCTATAAAGAAAGT-GAAGGTACATCTGGCAAAGTTTCATTTTGATTTCATCC-GTAAGCAGTTCCTCGAAGCAAATTTTCTGCTTC-GTATGATATATAAAAATAAGGTCTGC-AGTTATGGG-CACAATTAGTGCC-ATAGTGAATAACCAACAAGATT-TTGGGAAAGACAATTGTCTGTCACAAAGACTACAGGATATTAGAGATATTTATCTAT---AAGAACCCGANCATGCTCTTAACATGTTTCATCTTGAATCCCTATCACGAGTATTTGTTGCGCTGGTTGCNATAACAGTAAGTGNTTCTCTGACAAAATATGTTGTTCTTGCAATTTCCCGCAGATGACCAGAATATTGTTATTTTCGGTTG
Reference ( gi|2 ) : ATACAAAA-AG-CGAAGTTA-A-CATT--GTG-TC-AAA-CGTAATCA---TAATC---C-A--A-A--AA--A-CATA-T--A----CAAAA-TCGA--GT-G-T--AG---G-GCA-A---CACGGACC-T--CC-GA-CAA----AAGCGAAAGGTAGG-A-TC-AG-GTGCC--ATG-GAGG-AGT-A-A-G-CA-T----CTTC-TG-CTG-A--C-C----G---TC-AC-AC--C--C-GCC-TGA--GCCC----TTAGT-CG-AA-A---T---AA-AGTAAAC---GGAAT-TACC-CGTAG--TCAAA-----TCT---------A-GTA--GGAA-A-A-T-GACA-----CTAACAAAA----GGGTATGAAACA-AA--TC--AGTC---AAC-ATAT-GACTTA--GTGATAATT-TG------ATA-TCG-CAAACAAGGTC-----ATTATAGCGACCAT--AG------AATTTG---CGAAAT--GAT--GACTTTAAA-CGATATTCGT-TATA--ACC-CTGC-AGCATCAACTTTTTTGTTAGTAGTTGGCC------TCGCTTTAAAAAGTCCGCAT--ACGCATAGCATG--CTCTTGCGGT-ATCG-AA-TCAACTGGGAGATATTACACACCATAAG-CAGGCG---ATAGTGGG-TATATTACTA-CAT--AGAAA-----AGGAAA--GTTG-ATG-ATTGC---------AAAGTTAAAG-TC---A-TCACGCTT-----ATCA-TAT--AA-ATATAGTTGTCAGTCTGCC-ATTAG--AGTCAATGTTAAG-TAAAAT---ATCCAAATATGAAGCAGATAT--GTCAG------ATTCTATGGTGTCCTTTA----TA--TCGAGT----TCTTCGGGATATATCAAAATGGA-ATAATTATGAAAATTATGATTGTTAATTGATAACACATCATCTA-TATA--CCAATATGTAAGGTTGAAGG-ACAC--GGCA--GTTT---TTTGTTTTTATCCCGTAA-CAGTTTCT-GTA-CAAATT--CTGCTTCTATATGA-ATATAAAAATAAG-TCTGCCAATAAGGGGGCACAATTAGTGCCCATAG-GAATA-CCTACG-GATTGTTGG--AAGACC-TGGTCT--C-CAAAGACCACA------TAAATATATT---CTATGTGAGAAACTCAAGCATGCTTTTAATAT-------CT--A----CT-TCAGAAGTACTTGT-GTG--GA---CAAT--CAG--AGTGTTTTTCTAACAAAATATG-TAGTCTTG---TTTCCC---AACGACTAGAA-ATTCGTATTTTCGGGTG
gi|4 : ATACAAAA-AGGCGAAGTTA-A-CATT--GTG-TC-AAA-CGTAATCA---TAATC---C-A--A-A--AA--A-CATA-T--A----CAAAA-TCGA--GT-G-T--AG---G-GCA-A---CACGGACC-T--CC-GA-CGA----AAGTGAA-GGCAGG-A-AC-AG-GTGCC--ATG-GAGG-AAT-A-A-G-CA-T----CCTC-TG-CTG-A--C-C----GG--TC-AC-AC--C--C-GCCGTGA--ACCT----GTAGT-CG-AA-A---T---AA-AGTAAAC---GAGAT-TACC-CGTAG--TTAAA-----TCT---------A-GTA--G--A-A-A-T-AACACGT--CTAAC-AAA----GGGTATAGAACA-AA--TC--AGTC---AAC-ATAT-GACTTA--GTGATAATT-TG------TAA-TCG-CAAACAAGGTC-----A-TATAGCGACCGT--AG------AATTTG---TGAAAT--GAT--GACTTTAAA-CGAGATTCGT-
gi|6 : tgtttccattttttgtttacctgaggttttgttagatcgagtaaactatttttgaagtttctgttcaagaaatgcttattaagtgtgttaactaatatggATAGAAAATGG-CGAAGTTA-A-CAAAA-GTAATC-AAAACGTAATCA---TAGTC---C-A--A-A--AA--AACACA-T--T----CAATA-T-GA--GT-G-TTTAG---G-GCA-A---CACGGACC-T--TC-GA-CGA----AAGCG-AAGGCAGG-ATTC-AG-GTG-C--ATG-GAGGAAGT-A-A-G-GC-T----CCTC-TG-CTG-A--C-CG---G---TC-AC-A---C--C-GCCGTGA--GCCC----TTAGT-CGAAA-A---TAA-AA-AG-AAAC---GGGAT-TACC-CGTGG--TCAAA-----TCT---------A-GTA--GGTA-A-A-T-GA
gi|8 : tttgaatcgaggcaagctacttacagacaagttgttgttggcagggggtttcttaaATATAAAT-GG-CGAAGTAA-A-CAAT--GTG-AC-AAT-TGTAATCA---TAGTC---C-CC-A-A--AA--A-CATA-A--A----CAAAA-TCGA--GT-G-T--AG---G-GCA-A---CACGGACC-T--CC-GA-CAA----AAGCG-AAGGCAGG-A-TC-AG-GTCCC--ATG-AAGG-AGT-A-A-A-CA-T----TCTC-TG-CTG-A--T-CG---G---CC-AC-AC--C--C-GCCGTAA--GCCC----GTAGT-CG-AA-T---T---AA-AGTAAAC---GGgcaattttcgcatatttcgagcaaaggtaaacacaagta
gi|1 : gtaaattgccactgaatttctcaaacattaaagatctttgaataataagtatactttataagAAAT-GG-CGAAGT-A-A-CAAGAGGTA-TC-AAA-CGTACTCA---TAG-C---C-A--A-A--AA--A-CAT----------CACAA-TCGA--GT-GGT--AG---G-GCA-A---CACGGACCGT--CT-GA-CGA----AA-CGAAGCACAGGAA-TC-AG-GTG-C--A-G-GA-G-AGT-A-A-GCCA-T----C--CATG-CTG-A--CGC----GGGTTC-AC-AC--C--CAGCCGTGA--GCTCTG--TTCGT-CG-GA-A---TTACAA-AGTAAAC---G--AG-TACC-CGTCGCTTCGAAGATCCTCT---------A-GTATCGCAA-A-ACT-GACAGTGCTCCGACAACATATCGGGTAGGGAACACAAACTCCAAGCTACAAACGATATCCATTTAACGTG-TAATTCTGCCTAAAACAGCCGCCAAACCCGGTCCATTGATTA-GGCGACCGTTCAACGCTTTAATTTGTATCGTACTCGGATTCGA-TTTAAA-CGAGATGTGTGTATACCACC-CGGCAAACATC-ACTTTTGGATTTATAGTTGCCCCTCTCTTTGCTTTAAAAA-TCATCATGAACGCG----ATGATCCCTTGGCGT-ATCGCAATTCAACTGAGAGACATTACACAC--TAAGCCAGTTGGATATGGTGAGTTACACTTCTAGCATGCAGAAGCTAACAGGAAA--G-TG-ACATATTGCATTGGTCCGAGAGTCAAAGTTC---ATTCACGTTTTTACCATCATTAT--GATGT-TAGTTCTCAttgttaaatcaactgagagacatatacaccataagcaggtgatagtagtctg
gi|9 : ttttattgtgaagtttttaaaaatttttctctaaattgt-AG-CGAAGTTA-A-CATT--GTA-TT-AAA-CGTAATCA---TAATC---C-T--A-AGCAA--A-CATA-T--ATACACAAAG-TCAA--AT-G-T--AG---GCGAA-A---CACGGACC-T--CC-GA-CAA----AAGC-AAAGGCAGG-T-TTTAG-GTGC---ATG-GAGG-AGT-C-A-G-CA-T----CT-C-TG-CTG-A--C-C--------TC-AC-AT--C--C-GCCGTGA--GCCG----TTAGT-CG-AA-A---T---AA-AGTAAAC---GGGAT-TACC-TGTAG--TCAAttgtttttttcctgactgtggcttatttagaggactcaagtcgattttaagtaaaattgcttcgatagatattgatagcactatcttggggtgcggtgtcctttgtggtgttgcccttttaagagagagagatccaacacatggtactgtatagactgctacgtaataatattgaaacttgaattatgtacagcttgaatactacgcaccagcgtatgggagtctaatatagccctataaagaaagtgaaggtacatctggcaaagtttcattttgatttcatccgtaagcagttcctcgaagcaaattttctgcttcgtatgatatataaaaataaggtctgcagttatgggcacaattagtgccatagtgaataaccaacaagattttgggaaagacaattgtctgtcacaaagactacaggatattagagatatttatctataagaacccaagcatgctcttaatatgtttcatttaatcccttcagagtattgtgtgggttgcaataacaagtggttctctgacaaaatatgttattcttgttttccgcagatgaccagaatattgttattttcggttgccttttggttcaactaaaggcaattatcaattatctgaataagtcctagattttgtaatttatttatcgaggaggaattttgtatatattgacagttgttcggatgaaatcaagtatggttttgatggcaatcaacattttagaaaaaatgtcgagacttgaagttatgtctaaagtctttagagttttgtgaagaatccaacaatctgattgtacaacccaacttctggaaattaattgtagttggaatgagtgcat
gi|20 : tatcaggtattccaaccaatgtaatt-AG-CGAAGCTA-AACAAT--GTG-TTTAAA-CGTAATCAAGTTAACC---A-A--A-A--AA--A-TATA-T--A----C
gi|3 : atagtgaatttcaattaaatgG-CGAAGTAA-A-CAAT--GTG-TT-AAT-CGTAATGA---TAGTC---C-C--A-G--AA--A-CATA-T--A----CAAAG-TCGA--GT-G-T--AA---A-GCA-A---CACGGACC-T--CC-GA-TAA----AAGCGAA-GGCAGG-A-TC-AG-ATGCC--ATG-GAGA-AGT-A-A-G-CT-T----CCTC-TG-CTG-A--C-A----GG--TC-AC-AC--C--C-ATCGTGA--CGGC----TTAGT-CG-AA-A---C---AA-AGTAAAC---GGGGT-TACC-CGTTG--TCAAT-----TCT---------A-GTA--CGAG-A-A-A-AACAAT---CTAACAAA-----GGGTATAAAACA-AC--TC--AGTC---AAC-ATAT-GACTTA--GTGATAATT-TG------TAA-TCG-CAAACCAGATT-----TTTATAGCGACCGT--AG------AATTTG---CGAAAT--GAT--GAC-----------------------------TGC-AACATCAACATTTTAGTTAGTAGTTGGCT------TCGCTTTAAAAAGTCCTCAT--ACGCATGACATG--CTCTTGC-GT-ATCT-AA-TCAACTGGGAGACA-TACACACCATAAG-CAGGTG---ATAGT-GG-TACATTTCTG-CAT---------------AAATTGTTGTAAG-ACTGC-----------CGTTAGAG-TCAATA-TCAGG--T-----AAAA-TATCCAA-ATAT
gi|10 : atctcctcaataaattcgaagaaaatgtttaaggattaaggatatttagatacatataacttgG-CGAAGTAA-A-CAAT--GTA-TT-AAA-CGTAATCA---TAGTC---CCA--A-A--AA--A-CATA-TATA----CAAAA-TCGA--GT-G-T--AG---G-GCA-A---CACGGACC-T--TC-GA-C-A----AAGCGAAA-GCAGG-A-TC-GG-GTGCA--ATG-GAGG-AGT-A-A-G-CA-T----CCTC-TG-CTG-A--C-TG---G---TC-AC-AC--C--C-GCCGTGA--GCCC----GTAGT-CA-AA-A---T---AA-AGTAAAC---AGGGT-TACC-CGTgaagcagatatttcagaatctgtggtgtcctctatttcgagttcgtcgggatatatcatatggacatgcttataaaattctgattgtcgtaaaattatttgacaaga
gi|18 : gattattttcattgatataaattgG-CGAAGAAA-A-CAAT--GAA-TT-AAA-TGCAATCA---TAGTC---C-C--A-A--AACCA-TATA-T--A----CAAAT-TCGA--GC-A-T--AG---
gi|22 : aatggctatatgaaattccattgtatataaattgG-CGAAGTTA-C-CATT--GCA-TT-AAA-CGCAACCA---TTATC---C-
gi|7 : tcggtcttccaaatataaattgAAGTTCCA-CATC--GTG-TT-AAAACATAAT-A---TAATTACTC-A--A-A--AA--A--ATA-T--AA---CAAAACTCGAAAGA-G-TTGAG---G-GCA-A---CACGGATC-CAACCAGACCAA----AAGCGAA
gi|24 : agagtaagatctacagcatcaagtcttgaacgttgtagggttaccattgagtttataatggtctttcatacgataaaccgatgtcccgtgtcaacagcagagtcgcatcgaataaagattcctccctgccaattagtgccctgagtggccgagttaatttgcagcacaatcactcttcgcaatgtacgtcttcctatacaaatacttagaggcccgaAGTAA-A-CAAT--GTG-TT-AAA-CATAATCA---TAGTC---
gi|11 : actttcaatatacattggttg-AAA-CGTAATCA---TCAGC---C-ATTATA--AA--A-CACATT--A----CAAAATTCGGC-GTCG-T--AGT--GTGCATAGACCACGGACC-T---C-GA-TCACACTAAGC-CAAGGCGAG-A-TC-AGTCCGCCATATG-GAGA-TGT-ACA-G-CA-TTCTCCTTCTTG-CTGTA--CGCTGGGG---TC-ACAACGAC--C-GCCGTAA--TCCCCCTTTTAGTCCG-AA-A---
gi|5 : taacaatcaagtaccaAAAA-TGGA--AT-G-C--AGTTAG-ACA-AA--CACAGACC-C--CT-GG-ATA----TATC-AGAGGTGGG-A-TC-AG-GTGTC---T---AGG-AGTTA-A-G-CG-T----CTCC-TG-TCA-A--T-C----G---G--AC-AC--TATT-GTC-T-------T----TT--T-C--------------A-GGTAAAC---GGAGT-TAAC-CGTTG--TCAAAA----TCA---------ACGTA--TAAAGA-A-C-GGC------CTAACAAC-----TGCTATGAAACA-CA--TC--GGAC---AGC-ATTT-AACCCA--ATGGCAGGC-C-------ATGCTGG-CAAACAAAATC-----GTTATAACGAC-AT--AT------AATTTG---CGAAAT--GTT--GACTTTAAAGTGACA---GT-TGAA--ACCTCTGC-AACATCAAC---TTTGTCAGTata
gi|12 : aaacataaaattatcatatctcttttcgagttcaagagagattgaatgAAGGCAGG-AATC-AG--TGTC--ATGCGTAG-AGT-A-ATA-CAGT----CCTC-TGTCTG-AATC-G----G---TCCAC-AT--C--CAGCG-TGAAAGCC-----TTAGT-TG-AACACATT---AATAGTAAACGGTGGAGTATACCGCGTCG--TCACA-----TGTATATTTAAGA-GTA--GGAA-ATA-TCGAC------CTAAAAA
gi|23 : G-GAGG-AGT-A-A-T-CA-T----TATC-TG-CCG-A--T-T----GC--TC-AC-AC--T--T-GTCGTGG--GTC
gi|27 : T-CACC-CGTAG--TCAAA-----TGT---------A-GTA--GGGA-A-A-T-GACA-----TTAtacgtcaa
gi|15 : CAT--ACGCATATCATG--CTCTTGT-GT-ATCG-AA-
gi|8 : CGGTTGTTA-AA-TCAACTGAGAGACAT-ATACACCATAAG-CAGGTG---ATAGTAGgtnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncacacatcataacaggtgatagtggcatattgctacttagaaaaggattgat
gi|15 : gtaaattgccactgaatttctcaaacattaaagatctttgaataataagtatactttataagatataaatggcgaagtaaacaatgtgacaattgtaatcatagtccccaaaaacataaacaaaatcgagtgtagggcaacacggacctccgacaaaagcgaaggcaggatcaggtcccatgaaggagtaaacattctctgctgatcggccacacccgccgtaagcccgtagtcgaattaaagtaaaACACATCATAA--CAGGTG---ATAGTGG--CATATTGCTA-CTT--AGAAA-----AGGA-----TTG-ATtctg
gi|16 : catacgcatatcatgctcttgtgtatcgaagtnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncT-----GTTA-TAT--AA-ATGTAGTTATCAGAATACCAAATAGAAAGTCAACATTAAGTTAAAATAACACCAAAATAAGAAGCAAATATCGGTAAGTATATAGTTGTA-GGTGTTCTTAG----TAATTCGA
gi|3 : AT--AA-AT-T-GTTGTAAGACTGCC-GTTAG--AGTCAATATCAGG-TAAAAT---ATCCAAATATGAAGCAGATAT--TTCAG------AATCTGTGGTGTCCTCTA----TT--TCGAGT----TCGTCGGGATATATC-ATATGGACATGCTTAT-AAAATTCTGATTGTa
gi|14 : atctcctcaataaattcgaagaaaatgtttaaggattaaggatatttagatacatataacttggcgaagtaaacaatgtgttaatcgtaatgatagtcccagaaacatatacaaagtcgagtgtaaagcaacacggacctccgataaaagcgaaggcaggatcagatgccatggagaagtaagcttcctctgctgacaggtcacacccatcgtgacggcttagtcgaaacaaagtaaacggggttacccgttgtcaattctagtacgagaaaaacaatctaacaaagggtataaaacaactcagtcaacatatgacttagtgataatttgtaatcgcaaaccagatttttatagcgaccgtagaatttgcgaaatgatgactgcaacatcaacattttagttagtagttggcttcgctttaaaaagtcctcatacgcatgacatgctcttgcgtatctaatcaactgggagacatacacaccataagcaggtgatagtggtacatttctgcGTTGTCAGTCTGCC-ATTAG--AGTCAATAAAATG-TAAAGT---ATCCAAATATGAAGCAGATCT--GTCAG------ATTCTGTGGTGTCCTTTATTATTA--TTGA-TAAAATCTTCAAAA-ATATGAAA----A-ATG--TATG-AAATTAcgtaaaattatttgacaaga
gi|28 : TCAATGTTGAG-TAAAAT---ATCCACATATGAAGTAGActagaa
gi|29 : AAGCAGATCT--GTCAG------ATTCTATGGTGTCCT
gi|21 : TAT--GTCAG------ATTCTGTGGTGTCCTTTA----T
gi|1 : TCTAATATAGCCCTATAAAGAAAGT-GAAGGTACATCTGGCAAAGTTTCATTTTGATTTCATCC-GTAAGCAGTTCCTCGAAGCAAATTTTCTGCTTC-GTATGATATATAAAAATAAGGTCTGC-AGTTATGGG-CACAATTAGTGCC-ATAGTGAATAACCAACAAGATT-TTGGGAAAGACAATTGTCTGTCACAAAGACTACAGGATATTAGAGATATTTATCTAT---AAGAACCCAAGCATGCTCTTAATATGTTTCATTT--AATCCCT-TCAGA-GTA-TTGT-GTG--GGTTGCAATAACA---AGTGGTTCTCTGACAAAATATGTTATTCTTG---TTTTCCGCAGATGACCAGAATATTGTTATTTTCGGTTGtacataatagccttctatattacgagtatgaaat
gi|19 : ttttattgtgaagtttttaaaaatttttctctaaattgtaaatggcgaagtaacaagaggtatcaaacgtactcatagccaaaaaacatcacaatcgagtggtagggcaacacggaccgtctgacgaaacgaagcacaggaatcaggtgcaggagagtaagccatccatgctgacgcgggttcacacccagccgtgagctctgttcgtcggaattacaaagtaaacgagtacccgtcgcttcgaagatcctctagtatcgcaaaactgacagtgctccgacaacatatcgggtagggaacacaaactccaagctacaaacgatatccatttaacgtgtaattctgcctaaaacagccgccaaacccggtccattgattaggcgaccgttcaacgctttaatttgtatcgtactcggattcgatttaaacgagatgtgtgtataccacccggcaaacatcacttttggatttatagttgcccctctctttgctttaaaaatcatcatgaacgcgatgatcccttggcgtatcgcaattcaactgagagacattacacactaagccagttggatatggtgagttacacttctagcatgcagaagctaacaggaaagtgacatattgcattggtccgagagtcaaagttcattcacgtttttaccatcattatgatgttagttctcattgtttttttcctgactgtggcttatttagaggactcaagtcgattttaagtaaaattgcttcgatagatattgatagcactatcttggggtgcggtgtcctttgtggtgttgcccttttaagagagagagatccaacacatggtactgtatagactgctacgtaataatattgaaacttgaattatgtacagcttgaatactacgcaccagcgtatgggagCTCGATTATATTTT--ACAT-------CTTGA----CTATCACGAGTATTTGTTGCGCTGG---CCAT--CAGTAAGTGTTTTTCTAAC-AAATATG-TG--CTTGCAATTTCCccttttggttcaactaaaggcaattatcaattatctgaataagtcctagattttgtaatttatttatcgaggaggaattttgtatatattgacagttgttcggatgaaatcaagtatggttttgatggcaatcaacattttagaaaaaatgtcgagacttgaagttatgtctaaagtctttagagttttgtgaagaatccaacaatctgattgtacaacccaacttctggaaattaattgtagttggaatgagtgcat
4 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|13 ): TACATATAAATTGGTGAAGTAAACAATATGTTAAACTAAATGCATGGATATGAAGTCCACGGAATCCCAAAATACGCAACACAGTTAAGGTGATCAACAACACATTTCCAATAAAATAAAGCAAGAAAAACATGCCAT
Unaligned ( gi|17 ): AAGATGTATCGTATTTTCAAACTAGTAAGAAAGTGTATAGCTTCTGGGCTTTAGAACGTTCGAGACAAGCAGTCCACCAACAGAGGTGTTGAACCGTGATCTAATGCA
Unaligned ( gi|25 ): TGTAGGTATGCTTCATGCATCTTTCAACAAAAGAACAGAAAA
Unaligned ( gi|26 ): TACAATACAAATTGGCGAAGTAAACAATGTATTAAACGT
Alignments
lowQualScore : 22 1111 111 11 3333333333 1111 1111111 11111 222222222 333333 333333 11 11 111 11 222222222 11 2222222 2222222222 111 11 11 1 666666666666666666 1 1 222222 4444444 11 33333 11 1 1 111 1 1 1 333333333333 3333 888888888888888888888888888 22222222 11 11 4444444444444 2222222 44444444 222 111 11111111 4444 11111 1 11111111111111111 1 11 2 1 11 11 222 2 1 1 1 11 2 1 1 2 2 2 1 1 1 2 11 11 2222 222222 222 333 88888888888888888888888 1 1 333333 444444 2222 333 222 1
lowQualScore : 1 55 3 2 3 66 2 33 2 555 2 888 444 44 44 3 555 3 3333 6 77 3 3 99 999 7 3 000 3 55 3 3 6 7777 00 7 3 3 3 2 55 3 3 3 3 3 3 3 88888 3 3 44 0000000000 3 3 44 3 44 2222 3 3 3 3333333 4 777 3 3 3 1 55 55555 000000000 5 66 1 5 5 666 777777 444444 8 11 11 444 8 8 11 3 0 8 888888888 8 11 8 1 5555555 0 3333333333 444 11 11 0 5 1 999999999999999999 0 0 3 0 111111 2 1111111 6 1 33 55555 33 0 0 8 8 66 8 444 3 0 3 0 666666666666 3333 0 0000 0 444444444444444444444444444 1 77777777 1 0 11 8 44 3 4444444444444 1 7777777 00000000 0 6 000 111 6 5 77 5 99999 5 66666666 6 4444 1 7 88 1 88888 5 6 1 77777777777777777 5 77 4 555 0 5 88 88 111 4 0 5 5 4 5 88 0 5 5 0 4 3 0 0 5 5 4 5 0 88 88 3 3333 999999 2 111 555 6 1 6 99999999999999999999999 5 2 999 000000 1 111111 1 0 0 7 6666 777 000 5 55 3
lowQualScore : . .. . . . .. . .. . ... . ... ... .. .. . ... . .... . .. . . .. ... . . ... . .. . . . .... .. . . . . . .. . . . . . . . ..... . . .. .......... . . .. . .. .... . . . ....... . ... . . . . .. ..... ......... . .. . . . ... ...... ...... . .. .. ... . . .. . . . ......... . .. . . ....... . .......... ... .. .. . . . .................. . . . . ...... . ....... . . .. ..... .. . . . . .. . ... . . . . ............ .... . .... . ........................... . ........ . . .. . .. . ............. . ....... ........ . . ... ... . . .. . ..... . ........ . .... . . .. . ..... . . . ................. . .. . ... . . .. .. ... . . . . . . .. . . . . . . . . . . . . . .. .. . .... ...... . ... ... . . . ....................... . . ... ...... . ...... . . . . .... ... ... . .. .
lowQualScore : 0 66 1 9 8 33 7 44 5 000 7 333 555 22 22 1 444 1 8888 7 99 3 3 22 222 3 6 000 6 00 6 6 4 7777 22 3 6 6 6 0 00 3 3 3 3 3 3 3 33333 3 3 66 6666666666 3 3 66 3 66 7777 6 6 6 8888888 0 000 9 6 6 0 55 66666 000000000 0 99 4 0 0 111 111111 444444 0 00 00 000 0 0 00 8 8 0 000000000 0 00 0 0 4444444 8 2222222222 000 00 00 0 0 0 888888888888888888 2 0 2 0 555555 5 7777777 7 0 88 55555 88 0 0 0 0 55 0 000 2 0 5 0 555555555555 8888 7 7777 7 777777777777777777777777777 0 33333333 0 8 00 0 44 2 0000000000000 4 6666666 00000000 3 7 888 777 7 7 99 7 77777 7 44444444 7 7777 0 3 33 0 00000 0 7 0 00000000000000000 5 55 0 000 0 5 00 55 000 0 0 0 0 0 0 55 0 5 0 0 0 0 0 0 5 5 0 5 0 00 55 0 5555 555555 5 555 000 0 0 0 77777777777777777777777 0 3 333 000000 0 777777 0 7 7 3 0000 333 555 5 55 0
consensus : ATATAAATTG-GCGAAG-TAAACAAT--GTG-TT--AAA-CGTAATCA---T-AGTC---C-A-AA--AA--A-CAT---A-TA----CAAAA-TCGA--GT-G-T--AG---G-GCA-A---CACGGACC-T--CC-GA-CGA----AAGCGAAAGGCAGG-A-TC-AG-GTGCC--ATG-GAGG-AGT-A-A-G-CA-TCCTC-----TG-CTG-A--C-C----G---T-CAC-AC--CC-GCCGTG--AGCCC----TTAGT-CG-AA-A---T---AA-AGTAAAC---GGGGT-TACC-CGTNG--TCAAA-----TCT---------A-GTA--GGAA-A-A-T-GACA-----CTAACAACA----GGGTATGAAACA-AA--TC--AGTC---AAC-ATAT-GACTTA--GTGATAATT-TG-------CAAT-C--G-CAAACAAGGTC-----GTTATAGCGACCGT--AG------AATTTG---CGAAAT--GAT--GACTTTAAACGAGA-T-CGT-TGTA----A--CCCTGC-AACATCAAC-TTTTN-G--TTAGTAGTTGGCC----CTTCGCTTTAAAAAGTCCTCAT--ACGCAT-G-CATG--CTCTT-GCG-TATCG-AA-TCAACTGGGAGACATTACACACCATAAG-CAGGTG---ATAGTGGG-TACATTNCTA-CAT--AGAAA-----AGGAAAGTTGACGT---ATTGCA---------GAGTTAAAGTTCA--A-TCACGCTT-----ATCATAT--A-AATG-TAGTTGTCA-------------GACTGCC-G-----TTAGA-------AGTCAATATTAAG-TAAAAT---ATCC---AAATA-TGA-AGCAGATAT--GTCAG-AT-T--CTGT-GGTGTCCTTTA----TA--TCGAGT----TCTTCGGGATATATCAAAATGGA-ATG-TTATGAAAATTNTGATTGTTAATTGATAACACATCATCTAATATAGCCCNATANGNAAGGTTGAAGGTACACCTGGCAAAGTTTCATTTTGNTTTCATCCCGTAAGCAGTTCCTCGNAGCAAATTTTCTGCTTCTGTATGATATATAAAAATAAGGTCTGCCAGTNANGGGGCACAATTAGTGCCCATAGTGAATAACCNACGAGATTGTTGGGAAAGACNATNGTCTGTCACAAAGACCACAGGATATTAGANATATTTATCTATGTGAGGAACCCAAGCATGCTCTTAATATGTTT--CATCT--A----CTA--TCA-GAGTACTTGTTGCGCTGG--GCAAT--CAG-AAGTGTTTTTCTAACAAAATATGTTG-TCTTG---TTTCCCGCAGACGACCAGAATATTNNTATTTTCGGNTG
Reference ( family-235 ) : ATANAAAN-G-GCGAAG-TNAACAAT--GTG-TT--AAA-CGTAATCA---T-AGTC---C-A-AA--AA--A-CAT---A-TA----CAAAA-TCGA--GT-G-T--AG---G-GCA-A---CACGGACC-T--CC-GA-CGA----AAGCGAAAGGCAGG-A-TC-AG-GTGCC--ATG-GAGG-AGT-A-A-G-CA-TCCTC-----TG-CTG-A--C-C----G---T-CAC-AC--CC-GCCGTG--AGCCC----TTAGT-CG-AA-A---T---AA-AGTAAAC---GGGGT-TACC-CGTNG--TCAAA-----TCT---------A-GTA--GGAA-A-A-T-GACA-----CTAACAANA----GGGTATGGAACA-AA--TC--AGTC---AAC-ATAT-GACTTA--GTGATAATT-TG-------NNAT-C--G-CAAACNAGGTC-----GTTATAGCGACCGT--AG------AATTTG---CGAAAT--GAT--GACTTTAAACGAGA-T-CGT-TG-A----A--CCCTGC-AACATCAAC-TTTTN-G--TTAGTAGTTGNCCCTCTCTTCGCTTTAAAAAGTCNTCAT--ACGCGT-G-CATG--CTCTT-GCG-TATCG-AA-TCAACTGAGAGACATTACACACCATAAG-CAGGTG---ATAGTGGG-TACATTTCTA-CAT--AGAAG-----AGGAAAGTTGACGT---ACTGCATTGGTCCGAGNGTCAGAGTTCAATATTCANGTTT-----ATNATAT--A-AATG-TAGTTGTCA-------------GACTGCC-G-----TTAG--------AGTCAATATTAAG-TAAAAT---ATCC---AAATA-TGA-AGCAGATAT--GTCAG-AT-T--CTGT-GGTGTCCTTTA----TA--TCGAGTAAAATCNTCGGGATATATNAANATGGACATGCTTATGAAAATTNTGATTGTNNNNNNNNNNNNNNNNNTCTAATATAGCCCTATAAAGAAAGT-GAAGGTACATCTGGCAAAGTTTCATTTTGATTTCATCC-GTAAGCAGTTCCTCGAAGCAAATTTTCTGCTTC-GTATGATATATAAAAATAAGGTCTGC-AGTTATGGG-CACAATTAGTGCC-ATAGTGAATAACCAACAAGATT-TTGGGAAAGACAATTGTCTGTCACAAAGACTACAGGATATTAGAGATATTTATCTAT---AAGAACCCGANCATGCTCTTAACATGTTT--CATCTTGAATCCCTA--TCACGAGTATTTGTTGCGCTGGTTGCNATAACAGTAAGTGNTTCTCTGACAAAATATGTTGTTCTTGCAATTTCCCGCAGATGACCAGAATATTGTTATTTTCGGTTG
gi|1 : TGTAAAT-G-GCGAAG-T-AACAAGAGGTA-TC--AAA-CGTACTCA---T-AG-C---C-A-AA--AA--A-CAT-----------CACAA-TCGA--GT-GGT--AG---G-GCA-A---CACGGACCGT--CT-GA-CGA----AA-CGAAGCACAGGAA-TC-AG-GTG-C--A-G-GA-G-AGT-A-A-GCCA-TCC-A-----TG-CTG-A--CGC----GGGTT-CAC-AC--CCAGCCGTG--AGCTCTG--TTCGT-CG-GA-A---TTACAA-AGTAAAC---GAG---TACC-CGTCGCTTCGAAGATCCTCT---------A-GTATCGCAA-A-ACT-GACAGTGCTCCGACAACATATCGGGTAGGGAACACAAACTCCAAGCTACAAACGATATCCATTTAACGTG-TAATTCTGCCTAAAACAGC-C--GCCAAACCCGGTCCATTGATTA-GGCGACCGTTCAACGCTTTAATTTGTATCGTACTCGGATTCGA-TTTAAACGAGA-T--GTGTGTATACCA--CCCGGCAAACATC-AC-TTTTG-GATTTA-TAGTTGCCCCTCTCTTTGCTTTAAAAA-TCATCATGAACGCG-----ATGATCCCTTGGCG-TATCGCAATTCAACTGAGAGACATTACACAC--TAAGCCAGTTGGATATGGTGAGTTACACTTCTAGCATGCAGAAGCTAACAGGAAAG-TGACAT---ATTGCATTGGTCCGAGAGTCAAAGTTC---ATTCACGTTTTTACCATCAT-T--ATGATGTTAGTTCTCATTGTTTTTTTCCTGACTGTG-GCTTATTTAGAGGACTCAAGTCGATTTTAAG-TAAAATTG-CTTCGATAGATATTGATAGCA-CTAT--CTTGG-G-----GTGC-GGTGTCCTTTG----T
gi|1 : ttttattgtgaagtttttaaaaatttttctctaaatTCTAATATAGCCCTATAAAGAAAGT-GAAGGTACATCTGGCAAAGTTTCATTTTGATTTCATCC-GTAAGCAGTTCCTCGAAGCAAATTTTCTGCTTC-GTATGATATATAAAAATAAGGTCTGC-AGTTATGGG-CACAATTAGTGCC-ATAGTGAATAACCAACAAGATT-TTGGGAAAGACAATTGTCTGTCACAAAGACTACAGGATATTAGAGATATTTATCTAT---AAGAACCCAAGCATGCTCTTAATATGTTT--CATTT--AATCCCT---TCA-GAGTA----TTGTGTGGGTTGCAATAAC---AAGTGGTTCTCTGACAAAATATGTTATTCTTG---TTTTCCGCAGATGACCAGAATATTGTTATTTTCGGTTGggtgttgcccttttaagagagagagatccaacacatggtactgtatagactgctacgtaataatattgaaacttgaattatgtacagcttgaatactacgcaccagcgtatgggagtctaatatagccctataaagaaagtgaaggtacatctggcaaagtttcattttgatttcatccgtaagcagttcctcgaagcaaattttctgcttcgtatgatatataaaaataaggtctgcagttatgggcacaattagtgccatagtgaataaccaacaagattttgggaaagacaattgtctgtcacaaagactacaggatattagagatatttatctataagaacccaagcatgctcttaatatgtttcatttaatcccttcagagtattgtgtgggttgcaataacaagtggttctctgacaaaatatgttattcttgttttccgcagatgaccagaatattgttattttcggttgccttttggttcaactaaaggcaattatcaattatctgaataagtcctagattttgtaatttatttatcgaggaggaattttgtatatattgacagttgttcggatgaaatcaagtatggttttgatggcaatcaacattttagaaaaaatgtcgagacttgaagttatgtctaaagtctttagagttttgtgaagaatccaacaatctgattgtacaacccaacttctggaaattaattgtagttggaatgagtgcat
gi|10 : ttttattgtgaagtttttaaaaatttttctctaaattgtaaatggcgaagtaacaagaggtatcaaacgtactcatagccaaaaaacatcacaatcgagtggtagggcaacacggaccgtctgacgaaacgaagcacaggaatcaggtgcaggagagtaagccatccatgctgacgcgggttcacacccagccgtgagctctgttcgtcggaattacaaagtaaacgagtacccgtcgcttcgaagatcctctagtatcgcaaaactgacagtgctccgacaacatatcgggtagggaacacaaactccaagctacaaacgatatccatttaacgtgtaattctgcctaaaacagccgccaaacccggtccattgattaggcgaccgttcaacgctttaatttgtatcgtactcggattcgatttaaacgagatgtgtgtataccacccggcaaacatcacttttggatttatagttgcccctctctttgctttaaaaatcatcatgaacgcgatgatcccttggcgtatcgcaattcaactgagagacattacacactaagccagttggatatggtgagttacacttctagcatgcagaagctaacaggaaagtgacatattgcattggtccgagagtcaaagttcattcacgtttttaccatcattatgatgttagttctcattgtttttttcctgactgtggcttatttagaggactcaagtcgattttaagtaaaattgcttcgatagatattgatagcactatcttggggtgcggtgtcctttgtggtgttgcccttttaagagagagagatccaacacatggtactgtatagactgctacgtaataatattgaaacttgaattatgtacagcttgaatactacgcaccagcgtatgggagATATAAATTG-GCGAAG-TAAACAAT--GTA-TT--AAA-CGTAATCA---T-AGTC---CCA-AA--AA--A-CAT---A-TATA--CAAAA-TCGA--GT-G-T--AG---G-GCA-A---CACGGACC-T--TC-GA-C-A----AAGCGAAAG-CAGG-A-TC-GG-GTGCA--ATG-GAGG-AGT-A-A-G-CA-TCCTC-----TG-CTG-A--C-T----GG--T-CAC-AC--CC-GCCGTG--AGCCC----GTAGT-CA-AA-A---T---AA-AGTAAAC---AGGGT-TACC-CGTccttttggttcaactaaaggcaattatcaattatctgaataagtcctagattttgtaatttatttatcgaggaggaattttgtatatattgacagttgttcggatgaaatcaagtatggttttgatggcaatcaacattttagaaaaaatgtcgagacttgaagttatgtctaaagtctttagagttttgtgaagaatccaacaatctgattgtacaacccaacttctggaaattaattgtagttggaatgagtgcat
gi|11 : gattattttcattg--AAA-CGTAATCA---TCAGCCAT-T-A-TA--AA--A-CAC---ATTA----CAAAATTCGGC-GTCG-T--AGT--GTGCATAGACCACGGACC-T---C-GA-TCACACTAAGC-CAAGGCGAG-A-TC-AGTCCGCCATATG-GAGA-TGT-ACA-G-CA-TTCTCCTTCTTG-CTGTA--CGCTGGGG---T-CACAACGACC-GCCGTA--ATCCCCCTTTTAGTCCG-AA-A---
gi|12 : taacaatcaagtaccaAAGGCAGGAA-TC-A--GTGTC--ATGCGTAG-AGT-A-ATA-CAGTCCTC-----TGTCTG-AATC-G----G---TCCAC-AT--CC-AGCGTGAAAG-CC----TTAGT-TG-AACACATT---AATAGTAAACGGTGGAGTATACCGCGTCG--TCACA-----TGTATATTTAAGA-GTA--GGAA-ATA-TCGAC------CTAAAAAata
gi|13 : ATATAAATTG-GTGAAG-TAAACAAT--ATG-TT--AAA-C-TAA
gi|14 : tacGTTGTCA-------------GTCTGCC-A-----TTAG--------AGTCAATAAAATG-TAAAGT---ATCC---AAATA-TGA-AGCAGATCT--GTCAG-AT-T--CTGT-GGTGTCCTTTATTATTA--TTGA-TAAAATCTTCAAAA-ATATGAAAA-----ATG--TATGAAAatgcatggatatgaagtccacggaatcccaaaatacgcaacacagttaaggtgatcaacaacacatttccaataaaataaagcaagaaaaacatgccat
gi|15 : CAT--ACGCAT-ATCATG--CTCTT-GTG-TATCG-AA-ttactagaa
gi|15 : ACACATCATAA--CAGGTG---ATAGT-GG-CATATTGCTA-CTT--AGAAA-----AGGA---TTGAgtnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncacacatcataacaggtgatagtggcatattgctacttagaaaaggattgat
gi|16 : catacgcatatcatgctcttgtgtatcgaagtnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncT-----GTTATAT--A-AATG-TAGTTATCA-------------GAATACCAA-----ATAGAA------AGTCAACATTAAGTTAAAATAACACCA---AAATA-AGA-AGCAAATATCGGTAAGTATATAGTTGTAGGTGTTCTTAG----TAATTCGAt
gi|18 : ATATAAATTG-GCGAAG-AAAACAAT--GAA-TT--AAA-TGCAATCA---T-AGTC---C-C-AA--AACCA-TAT---A-TA----CAAAT-TCGA--GC-A-T--AG---a
gi|19 : aatggctatatgaaattccattgtATATTTTACATCTTGA----CTA--TCACGAGTATTTGTTGCGCTG---GCCAT--CAGTAAGTGTTTTTCTAAC-AAATATG-TG--CTTGCAATTTCC
gi|2 : ctcgattATACAAAA-A-GCGAAG-TTAACATT--GTG-TC--AAA-CGTAATCA---T-AATC---C-A-AA--AA--A-CAT---A-TA----CAAAA-TCGA--GT-G-T--AG---G-GCA-A---CACGGACC-T--CC-GA-CAA----AAGCGAAAGGTAGG-A-TC-AG-GTGCC--ATG-GAGG-AGT-A-A-G-CA-TCTTC-----TG-CTG-A--C-C----G---T-CAC-AC--CC-GCC-TG--AGCCC----TTAGT-CG-AA-A---T---AA-AGTAAAC---GGAAT-TACC-CGTAG--TCAAA-----TCT---------A-GTA--GGAA-A-A-T-GACA-----CTAACAAAA----GGGTATGAAACA-AA--TC--AGTC---AAC-ATAT-GACTTA--GTGATAATT-TG-------ATAT-C--G-CAAACAAGGTC-----ATTATAGCGACCAT--AG------AATTTG---CGAAAT--GAT--GACTTTAAACGATA-TTCGT-TATA----A--CCCTGC-AGCATCAAC-TTTTTTG--TTAGTAGTTGGCC------TCGCTTTAAAAAGTCCGCAT--ACGCATAG-CATG--CTCTT-GCGGTATCG-AA-TCAACTGGGAGATATTACACACCATAAG-CAGGCG---ATAGTGGG-TATATTACTA-CAT--AGAAA-----AGGAAAGTTGATG----ATTGCA---------AAGTTAAAGT-CA----TCACGCTT-----ATCATAT--A-AATA-TAGTTGTCA-------------GTCTGCC-A-----TTAG--------AGTCAATGTTAAG-TAAAAT---ATCC---AAATA-TGA-AGCAGATAT--GTCAG-AT-T--CTAT-GGTGTCCTTTA----TA--TCGAGT----TCTTCGGGATATATCAAAATGGA-ATAATTATGAAAATTATGATTGTTAATTGATAACACATCATCTA-TATA--CCAATATGTAAGGTTGAAGG-ACAC--GGCA--GTTT---TTTGTTTTTATCCCGTAA-CAGTTTCT-GTA-CAAATT--CTGCTTCTATATGA-ATATAAAAATAAG-TCTGCCAATAAGGGGGCACAATTAGTGCCCATAG-GAATA-CCTACG-GATTGTTGG--AAGACC-TGGTCT--C-CAAAGACCACA------TAAATATATT---CTATGTGAGAAACTCAAGCATGCTTTTAATAT------------------CTACTTCAGAAGTACTTGT---G-TGG--ACAAT--CAG--AGTGTTTTTCTAACAAAATATGTAG-TCTTG---TTTCCC---AACGACTAGAA-ATTCGTATTTTCGGGTG
gi|20 : AAAT-GAGCGAAGCTAAACAAT--GTGTTT--AAA-CGTAATCAAGTT-AACC---A-A-AA--AA--A-TAT---A-TA----C
gi|21 : atagtgaatttcaattTAT--GTCAG-AT-T--CTGT-GGTGTCCTTTA----T
gi|22 : ATATAAATTG-GCGAAG-TTACCATT--GCA-TT--AAA-CGCAACCA---T-TATC---C-tacataatagccttctatattacgagtatgaaat
gi|23 : tcggtcttccaaG-GAGG-AGT-A-A-T-CA-TTATC-----TG-CCG-A--T-T----GC--T-CAC-AC--TT-GTCGTG--GGTC
gi|24 : AG-TAAACAAT--GTG-TT--AAA-CATAATCA---T-AGTC---tacgtcaa
gi|26 : actttcaatatacattggttgATACAAATTG-GCGAAG-TAAACAAT--GTA-TT--AAA-CGT
gi|27 : tacaT-CACC-CGTAG--TCAAA-----TGT---------A-GTA--GGGA-A-A-T-GACA-----TTA
gi|28 : TCAATGTTGAG-TAAAAT---ATCC---ACATA-TGA-AGTAGA
gi|29 : A-AGCAGATCT--GTCAG-AT-T--CTAT-GGTGTCCT
gi|3 : ATATAACTTG-GCGAAG-TAAACAAT--GTG-TT--AAT-CGTAATGA---T-AGTC---C-C-AG--AA--A-CAT---A-TA----CAAAG-TCGA--GT-G-T--AA---A-GCA-A---CACGGACC-T--CC-GA-TAA----AAGCGAA-GGCAGG-A-TC-AG-ATGCC--ATG-GAGA-AGT-A-A-G-CT-TCCTC-----TG-CTG-A--C-A----GG--T-CAC-AC--CC-ATCGTG--ACGGC----TTAGT-CG-AA-A---C---AA-AGTAAAC---GGGGT-TACC-CGTTG--TCAAT-----TCT---------A-GTA--CGAG-A-A-A-AACAAT---CTAACAA-A----GGGTATAAAACA-AC--TC--AGTC---AAC-ATAT-GACTTA--GTGATAATT-TG-------TAAT-C--G-CAAACCAGATT-----TTTATAGCGACCGT--AG------AATTTG---CGAAAT--GAT--GA--------------------------------CTGC-AACATCAACATTTTA-G--TTAGTAGTTGG------CTTCGCTTTAAAAAGTCCTCAT--ACGCAT-GACATG--CTCTT-GCG-TATCT-AA-TCAACTGGGAGACA-TACACACCATAAG-CAGGTG---ATAGT-GG-TACATTTCTG-CAT----------------AAATTGTTGTAAGACTGC-----------CGTTAGAG-TCAATA-TCAGG--T-----AAAATATCCA-AATA-T
gi|3 : atctcctcaataaattcgaagaaaatgtttaaggattaaggatatttagatacAT--A-AAT--T-GTTGTAA-------------GACTGCC-G-----TTAG--------AGTCAATATCAGG-TAAAAT---ATCC---AAATA-TGA-AGCAGATAT--TTCAG-AA-T--CTGT-GGTGTCCTCTA----TT--TCGAGT----TCGTCGGGATATATC-ATATGGACATGCTTAT-AAAATTCTGATTGTgaagcagatatttcagaatctgtggtgtcctctatttcgagttcgtcgggatatatcatatggacatgcttataaaattctgattgtcgtaaaattatttgacaaga
gi|4 : atctcctcaataaattcgaagaaaatgtttaaggattaaggatatttagatacatataacttggcgaagtaaacaatgtgttaatcgtaatgatagtcccagaaacatatacaaagtcgagtgtaaagcaacacggacctccgataaaagcgaaggcaggatcagatgccatggagaagtaagcttcctctgctgacaggtcacacccatcgtgacggcttagtcgaaacaaagtaaacggggttacccgttgtcaattctagtacgagaaaaacaatctaacaaagggtataaaacaactcagtcaacatatgacttagtgataatttgtaatcgcaaaccagatttttatagcgaccgtagaatttgcgaaatgatgactgcaacatcaacattttagttagtagttggcttcgctttaaaaagtcctcatacgcatgacatgctcttgcgtatctaatcaactgggagacatacacaccataagcaggtgatagtggtacatttctgcATACAAAAAG-GCGAAG-TTAACATT--GTG-TC--AAA-CGTAATCA---T-AATC---C-A-AA--AA--A-CAT---A-TA----CAAAA-TCGA--GT-G-T--AG---G-GCA-A---CACGGACC-T--CC-GA-CGA----AAGTG-AAGGCAGG-A-AC-AG-GTGCC--ATG-GAGG-AAT-A-A-G-CA-TCCTC-----TG-CTG-A--C-CG---G---T-CAC-AC--CC-GCCGTG--AACCT----GTAGT-CG-AA-A---T---AA-AGTAAAC---GAGAT-TACC-CGTAG--TTAAA-----TCT---------A-GTA--G--A-A-A-T-AACACGT--CTAACAA-A----GGGTATAGAACA-AA--TC--AGTC---AAC-ATAT-GACTTA--GTGATAATT-TG-------TAAT-C--G-CAAACAAGGTC-----A-TATAGCGACCGT--AG------AATTTG---TGAAAT--GAT--GACTTTAAACGAGATT-CGT-cgtaaaattatttgacaaga
gi|5 : tgtttccattttttgtttacctgaggttttgttagatcgagtaaactatttttgaagtttctgttcaagaaatgcttattaagtgtgttaactaatatgg-AGTT---C-A-AG--AG--A-GATTGAA-TG-----AAAA-TGGA--AT-G-C--AGTTAG-ACA-AA--CACAGACC-C--CT-GG-ATA----TATC-AGAGGTGGG-A-TC-AG-GTGTC---T---AGG-AGTTA-A-G-CG-TCTCC-----TG-TCA-A--T-C----G---G--AC-AC--T--ATTGT-------C----TTTTT-C--------------A-GGTAAAC---GGAGT-TAAC-CGTTG--TCAAAA----TCA---------ACGTA--TAAAGA-A-C-GGC------CTAACAAC-----TGCTATGAAACA-CA--TC--GGAC---AGC-ATTT-AACCCA--ATGGCAG----G-------CCATGCTGG-CAAACAAAATC-----GTTATAACGAC-AT--AT------AATTTG---CGAAAT--GTT--GACTTTAAA-GTGA-C-AGT-TG-A----AACCTCTGC-AACATCAAC-TTT---G--TCAGT
gi|6 : aaacataaaattatcatatctcttttcgATAGAAAATG-GCGAAG-TTAACAAAA-GTA-ATCAAAA-CGTAATCA---T-AGTC---C-A-AA--AA--AACAC---A-TT----CAATA-T-GA--GT-G-TTTAG---G-GCA-A---CACGGACC-T--TC-GA-CGA----AAGCG-AAGGCAGG-ATTC-AG-GTG-C--ATG-GAGGAAGT-A-A-G-GC-TCCTC-----TG-CTG-A--C-CG---G---T-CAC-A---CC-GCCGTG--AGCCC----TTAGT-CGAAA-A---TAA-AA-AG-AAAC---GGGAT-TACC-CGTGG--TCAAA-----TCT---------A-GTA--GGTA-A-A-T-GA
gi|7 : tttgaatcgaggcaagctacttacagacaagttgttgttggcagggggtttcttaaACATC--GTG-TT--AAAACATAAT-A---T-AATTACTC-A-AA--AA--A--AT---A-TAA---CAAAACTCGAAAGA-G-TTGAG---G-GCA-A---CACGGATC-CAACCAGACCAA----AAGCGAAgcaattttcgcatatttcgagcaaaggtaaacacaagta
gi|8 : agagtaagatctacagcatcaagtcttgaacgttgtagggttaccattgagtttataatggtctttcatacgataaaccgatgtcccgtgtcaacagcagagtcgcatcgaataaagattcctccctgccaattagtgccctgagtggccgagttaatttgcagcacaatcactcttcgcaatgtacgtcttcctatacaaatacttagaggcccgaaagttccATATAAAT-G-GCGAAG-TAAACAAT--GTG-AC--AAT-TGTAATCA---T-AGTC---C-CCAA--AA--A-CAT---A-AA----CAAAA-TCGA--GT-G-T--AG---G-GCA-A---CACGGACC-T--CC-GA-CAA----AAGCG-AAGGCAGG-A-TC-AG-GTCCC--ATG-AAGG-AGT-A-A-A-CA-TTCTC-----TG-CTG-A--T-CG---G---C-CAC-AC--CC-GCCGTA--AGCCC----GTAGT-CG-AA-T---T---AA-AGTAAAC---G-----------GTTG--TTAAA-----TC
gi|8 : gtaaattgccactgaatttctcaaacattaaagatctttgaataataagtatactttataag-AA-TCAACTGAGAGACAT-ATACACCATAAG-CAGGTG---ATAGTAGaactgagagacatatacaccataagcaggtgatagtagtctg
gi|9 : gtaaattgccactgaatttctcaaacattaaagatctttgaataataagtatactttataagatataaatggcgaagtaaacaatgtgacaattgtaatcatagtccccaaaaacataaacaaaatcgagtgtagggcaacacggacctccgacaaaagcgaaggcaggatcaggtcccatgaaggagtaaacattctctgctgatcggccacacccgccgtaagcccgtagtcgaattaaagtaaacggttgttaATGTAATT-A-GCGAAG-TTAACATT--GTA-TT--AAA-CGTAATCA---T-AATC---C-T-AAGCAA--A-CAT---A-TATACACAAAG-TCAA--AT-G-T--AG---GCGAA-A---CACGGACC-T--CC-GA-CAA----AAGC-AAAGGCAGG-T-TTTAG-GTGC---ATG-GAGG-AGT-C-A-G-CA-TC-TC-----TG-CTG-A--C-C--------T-CAC-AT--CC-GCCGTG--AGCCG----TTAGT-CG-AA-A---T---AA-AGTAAAC---GGGAT-TACC-TGTAG--TCAAtctg
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|17 ): AAGATGTATCGTATTTTCAAACTAGTAAGAAAGTGTATAGCTTCTGGGCTTTAGAACGTTCGAGACAAGCAGTCCACCAACAGAGGTGTTGAACCGTGATCTAATGCA
Unaligned ( gi|25 ): TGTAGGTATGCTTCATGCATCTTTCAACAAAAGAACAGAAAA
Alignments
lowQualScore : 111 11 3333333333 1111 1111111 11111 111111111 333333 222222 11 11 111 11 222222222 11 2222222 2222222222 111 11 11 1 44444444444444 1 1 2 11 4444444 11 1 2222 1 1 111 11 1 11 33333 1111 1 888888888 222 33333 1 11 4444444444444 2222222 444444444 222 111 11111111 2222 1 2222 1 11 1 1 11 11 222 1 1 1 1 11 1 1 1 1 1 1 1 1 1 1 11 11 11 1 222222 222 222 111111 4444444444 111 1 333333333 22 22222 222 222 1
lowQualScore : 2 2 0 66 2 33 2 555 2 2 888 3 44 44 5555 555 3 9999 6 77 3 3 99 999 7 3 000 3 55 3 3 6 7777 00 7 3 3 3 2 55 3 3 3 3 3 3 3 88888 3 3 44 0000000000 3 3 44 3 44 2222 3 3 3 3333333 4 777 3 3 3 1 55 55555 777777777 4 66 0 4 8 4 4 4 111111 444444 8 11 11 444 8 8 11 3 0 8 888888888 8 11 8 0 5555555 0 3333333333 444 11 11 0 5 1 22222222222222 0 0 3 0 77 33 2 0000000 6 33 0 6666 2 0 0 8 8 66 8 444 3 22 1 0 33 33333 2222 5 000000000 222 33333 3 0 66 3 4444444444444 1 7777777 555555555 0 6 000 111 6 5 77 5 99999 5 66666666 6 8888 7 7 7 3 9999 6 1 5 77 1 1 1 5 5 88 88 111 1 5 5 5 1 5 88 5 5 5 5 1 1 5 5 5 5 1 5 5 88 66 1 88 5 999999 1 111 000 888888 2222222222 666 2 333333333 00 7 33333 333 000 5 22 1
lowQualScore : . . . .. . .. . ... . . ... . .. .. .... ... . .... . .. . . .. ... . . ... . .. . . . .... .. . . . . . .. . . . . . . . ..... . . .. .......... . . .. . .. .... . . . ....... . ... . . . . .. ..... ......... . .. . . . . . . ...... ...... . .. .. ... . . .. . . . ......... . .. . . ....... . .......... ... .. .. . . . .............. . . . . .. .. . ....... . .. . .... . . . . . .. . ... . .. . . .. ..... .... . ......... ... ..... . . .. . ............. . ....... ......... . . ... ... . . .. . ..... . ........ . .... . . . . .... . . . .. . . . . . .. .. ... . . . . . . .. . . . . . . . . . . . . . .. .. . .. . ...... . ... ... ...... .......... ... . ......... .. . ..... ... ... . .. .
lowQualScore : 4 9 3 33 7 44 5 000 7 7 333 1 22 22 5555 444 1 6666 7 99 3 3 22 222 3 6 000 6 00 6 6 4 7777 22 3 6 6 6 0 00 3 3 3 3 3 3 3 33333 3 3 66 6666666666 3 3 66 3 66 7777 6 6 6 8888888 0 000 9 6 6 0 55 66666 888888888 4 11 1 4 9 4 4 4 444444 222222 0 00 00 000 0 0 00 8 8 0 444444444 0 00 0 6 4444444 8 2222222222 000 00 00 0 0 0 66666666666666 0 0 2 0 88 88 5 0000000 7 88 0 5555 5 0 0 0 0 55 0 000 2 55 0 0 88 33333 0000 5 000000000 000 33333 2 0 55 2 0000000000000 4 6666666 444444444 3 7 888 777 7 7 99 7 77777 7 44444444 7 3333 3 3 3 3 3333 7 0 5 55 0 0 0 5 5 00 55 000 0 0 0 0 0 0 55 5 5 0 0 0 0 0 0 5 5 0 5 0 00 55 0 00 5 555555 0 555 555 777777 3333333333 777 0 000000000 77 3 00000 333 555 5 00 0
consensus : ATATAAATTGGCGAAG-TAAACAAT--GTG-TT--AAA-CGTAATCA---T-AGT-C---CA-AA--AA--A-C--AT---A-TA----CAAAA-TCGA--GT-G-T--AG---G-GCA-A---CACGGACC-T--CC-GA-CGA----AAGCGAAAGGCAGG-A-TC-AG-GTGCC--ATG-GAGG-AGT-A-A-G-CA-TCCTC-----TG-CTG-A--C-C----G---T-CAC-AC--CC-GCCGTG--AGCCC----TTAGT-CG-AA-A---T---AA-AGTAAAC---GGGGT-TACC-CGTNG--TCAAA-----TCT---------A-GTA--GGAA-A-A-T-G-ACA-----CTAACAACA----GGGTATGAAACA-AA--TC--AGTC---AAC-ATAT-GACTTA--GTGATAATT-TG-------CAAT-C--G-CAAACAAGGTC-----GTTATAGCGACCGT--AG------AATTTG---CGAAAT--GAT--GACTTTAAACGAGATTCGT-TGTA----ACC-CTGC-AACATCAAC-TTTTNG--TTAGTAGTTGGCC----CTTCGCTTTAAAAAGTCCTCAT--ACGC-AT-G-CATGCTCTT-GC-GTATCG-AA-TCAACTGGGAGACATTACACACCATAAG-CAGGTG---ATAGTGGG-TACATTNCTA-CAT--AGAAA-----AGGAAAGTTGACGTATTGCATTGGTCCGAGAGTCAAAGTCCANTCACGCTT-----ATCATATA-AATG-TAGTTGTCA-------------GACTGCC-G-----TTAGA------AAGTCAATATTAAG-TAAAAT---ATCC---AAATA-TGA-AGCAGATAT--GTCAG-AT-T--CTGT-GGTGTCCTTTA----TA--TCGAGT----TCTTCGGGATATATCAAAATGGA-AT-G-TTATGAAAATTNTGATTGTTAATTGATAACACATCATCTAATATAGCCCNATANGNAAGGTTGAAGGTACACCTGGCAAAGTTTCATTTTGNTTTCATCCCGTAAGCAGTTCCTCGNAGCAAATTTTCTGCTTCTGTATGATATATAAAAATAAGGTCTGCCAGTNANGGGGCACAATTAGTGCCCATAGTGAATAACCNACGAGATTGTTGGGAAAGACNATNGTCTGTCACAAAGACCACAGGATATTAGANATATTTATCTATGTGAGGAACCCAAGCATGCTCTTAATAT-TT-CATCT--A----CT-TCA-G-AGTACTTGT-TG-GCT-GGCAATCAG-AAGTGTTTTTCTAACAAAATATGTTG-TCTTG---TTTCCCGCAGACGACCAGAATATTNNTATTTTCGGNTG
Reference ( family-235 ) : ATATAAATTGGCGAAG-TAAACAAT--GTG-TT--AAA-CGTAATCA---T-AGT-C---CA-AA--AA--A-C--AT---A-TA----CAAAA-TCGA--GT-G-T--AG---G-GCA-A---CACGGACC-T--CC-GA-CGA----AAGCGAAAGGCAGG-A-TC-AG-GTGCC--ATG-GAGG-AGT-A-A-G-CA-TCCTC-----TG-CTG-A--C-C----G---T-CAC-AC--CC-GCCGTG--AGCCC----TTAGT-CG-AA-A---T---AA-AGTAAAC---GGGGT-TACC-CGTNG--TCAAA-----TCT---------A-GTA--GGAA-A-A-T-G-ACA-----CTAACAACA----GGGTATGAAACA-AA--TC--AGTC---AAC-ATAT-GACTTA--GTGATAATT-TG-------CAAT-C--G-CAAACAAGGTC-----GTTATAGCGACCGT--AG------AATTTG---CGAAAT--GAT--GACTTTAAACGAGA-TCGT-TGTA----ACC-CTGC-AACATCAAC-TTTTNG--TTAGTAGTTGGCC----CTTCGCTTTAAAAAGTCCTCAT--ACGC-AT-G-CATGCTCTT-GC-GTATCG-AA-TCAACTGGGAGACATTACACACCATAAG-CAGGTG---ATAGTGGG-TACATTNCTA-CAT--AGAAA-----AGGAAAGTTGACGTATTGC---------AGAGTTAAAGTTCAATCACGCTT-----ATCATATA-AATG-TAGTTGTCA-------------GACTGCC-G-----TTAG-------AAGTCAATATTAAG-TAAAAT---ATCC---AAATA-TGA-AGCAGATAT--GTCAG-AT-T--CTGT-GGTGTCCTTTA----TA--TCGAGT----TCTTCGGGATATATCAAAATGGA-AT-G-TTATGAAAATTNTGATTGTTAATTGATAACACATCATCTAATATAGCCCNATANGNAAGGTTGAAGGTACACCTGGCAAAGTTTCATTTTGNTTTCATCCCGTAAGCAGTTCCTCGNAGCAAATTTTCTGCTTCTGTATGATATATAAAAATAAGGTCTGCCAGTNANGGGGCACAATTAGTGCCCATAGTGAATAACCNACGAGATTGTTGGGAAAGACNATNGTCTGTCACAAAGACCACAGGATATTAGANATATTTATCTATGTGAGGAACCCAAGCATGCTCTTAATATGTTTCATCT--A----CTATCA-G-AGTACTTGT-TGCGCTGGGCAATCAG-AAGTGTTTTTCTAACAAAATATGTTG-TCTTG---TTTCCCGCAGACGACCAGAATATTNNTATTTTCGGNTG
gi|1 : TGTAAAT-GGCGAAG-TAA-CAAGAGGTA-TC--AAA-CGTACTCA---T-AG--C---CA-AA--AA--A-C--AT-----------CACAA-TCGA--GT-GGT--AG---G-GCA-A---CACGGACCGT--CT-GA-CGA----AA-CGAAGCACAGGAA-TC-AG-GTG-C--A-G-GA-G-AGT-A-A-GCCA-TCC-A-----TG-CTG-A--CGC----GGGTT-CAC-AC--CCAGCCGTG--AGCTCTG--TTCGT-CG-GA-A---TTACAA-AGTAAAC---GAG---TACC-CGTCGCTTCGAAGATCCTCT---------A-GTATCGCAA-A-ACT-G-ACAGTGCTCCGACAACATATCGGGTAGGGAACACAAACTCCAAGCTACAAACGATATCCATTTAACGTG-TAATTCTGCCTAAAACAGC-C--GCCAAACCCGGTCCATTGATTA-GGCGACCGTTCAACGCTTTAATTTGTATCGTACTCGGATTCGA-TTTAAACGAGA-T-GTGTGTATACCACC-CGGCAAACATC-AC-TTTTGGATTTA-TAGTTGCCCCTCTCTTTGCTTTAAAAA-TCATCATGAACGCGAT-G--AT-CCCTTGGC-GTATCGCAATTCAACTGAGAGACATTACACAC--TAAGCCAGTTGGATATGGTGAGTTACACTTCTAGCATGCAGAAGCTAACAGGAAAG-TGACATATTGCATTGGTCCGAGAGTCAAAGTTCATTCACGTTTTTACCATCAT-TATGATGTTAGTTCTCATTGTTTTTTTCCTGACTGTG-GCTTATTTAGAGGACTCAAGTCGATTTTAAG-TAAAATTG-CTTCGATAGATATTGATAGCA-CTAT--CTTGG-G-----GTGC-GGTGTCCTTTG----T
gi|1 : ttttattgtgaagtttttaaaaatttttctctaaatTCTAATATAGCCCTATAAAGAAAGT-GAAGGTACATCTGGCAAAGTTTCATTTTGATTTCATCC-GTAAGCAGTTCCTCGAAGCAAATTTTCTGCTTC-GTATGATATATAAAAATAAGGTCTGC-AGTTATGGG-CACAATTAGTGCC-ATAGTGAATAACCAACAAGATT-TTGGGAAAGACAATTGTCTGTCACAAAGACTACAGGATATTAGAGATATTTATCTAT---AAGAACCCAAGCATGCTCTTAATATGTTTCATTT--AATCCCT-TCA-G-AGTA-TTGTGTGGGTT--GCAATAAC-AAGTGGTTCTCTGACAAAATATGTTATTCTTG---TTTTCCGCAGATGACCAGAATATTGTTATTTTCGGTTGggtgttgcccttttaagagagagagatccaacacatggtactgtatagactgctacgtaataatattgaaacttgaattatgtacagcttgaatactacgcaccagcgtatgggagtctaatatagccctataaagaaagtgaaggtacatctggcaaagtttcattttgatttcatccgtaagcagttcctcgaagcaaattttctgcttcgtatgatatataaaaataaggtctgcagttatgggcacaattagtgccatagtgaataaccaacaagattttgggaaagacaattgtctgtcacaaagactacaggatattagagatatttatctataagaacccaagcatgctcttaatatgtttcatttaatcccttcagagtattgtgtgggttgcaataacaagtggttctctgacaaaatatgttattcttgttttccgcagatgaccagaatattgttattttcggttgccttttggttcaactaaaggcaattatcaattatctgaataagtcctagattttgtaatttatttatcgaggaggaattttgtatatattgacagttgttcggatgaaatcaagtatggttttgatggcaatcaacattttagaaaaaatgtcgagacttgaagttatgtctaaagtctttagagttttgtgaagaatccaacaatctgattgtacaacccaacttctggaaattaattgtagttggaatgagtgcat
gi|10 : ttttattgtgaagtttttaaaaatttttctctaaattgtaaatggcgaagtaacaagaggtatcaaacgtactcatagccaaaaaacatcacaatcgagtggtagggcaacacggaccgtctgacgaaacgaagcacaggaatcaggtgcaggagagtaagccatccatgctgacgcgggttcacacccagccgtgagctctgttcgtcggaattacaaagtaaacgagtacccgtcgcttcgaagatcctctagtatcgcaaaactgacagtgctccgacaacatatcgggtagggaacacaaactccaagctacaaacgatatccatttaacgtgtaattctgcctaaaacagccgccaaacccggtccattgattaggcgaccgttcaacgctttaatttgtatcgtactcggattcgatttaaacgagatgtgtgtataccacccggcaaacatcacttttggatttatagttgcccctctctttgctttaaaaatcatcatgaacgcgatgatcccttggcgtatcgcaattcaactgagagacattacacactaagccagttggatatggtgagttacacttctagcatgcagaagctaacaggaaagtgacatattgcattggtccgagagtcaaagttcattcacgtttttaccatcattatgatgttagttctcattgtttttttcctgactgtggcttatttagaggactcaagtcgattttaagtaaaattgcttcgatagatattgatagcactatcttggggtgcggtgtcctttgtggtgttgcccttttaagagagagagatccaacacatggtactgtatagactgctacgtaataatattgaaacttgaattatgtacagcttgaatactacgcaccagcgtatgggagATATAAATTGGCGAAG-TAAACAAT--GTA-TT--AAA-CGTAATCA---T-AGTCC---CA-AA--AA--A-CATAT---A-TA----CAAAA-TCGA--GT-G-T--AG---G-GCA-A---CACGGACC-T--TC-GA-C-A----AAGCGAAA-GCAGG-A-TC-GG-GTGCA--ATG-GAGG-AGT-A-A-G-CA-TCCTC-----TG-CTG-A--C-TG---G---T-CAC-AC--CC-GCCGTG--AGCCC----GTAGT-CA-AA-A---T---AA-AGTAAAC---AGGGT-TACC-CGTccttttggttcaactaaaggcaattatcaattatctgaataagtcctagattttgtaatttatttatcgaggaggaattttgtatatattgacagttgttcggatgaaatcaagtatggttttgatggcaatcaacattttagaaaaaatgtcgagacttgaagttatgtctaaagtctttagagttttgtgaagaatccaacaatctgattgtacaacccaacttctggaaattaattgtagttggaatgagtgcat
gi|11 : gattattttcattg--AAA-CGTAATCA---TCAGC-CAT-TA-TA--AA--A-C--AC---ATTA----CAAAATTCGGC-GTCG-T--AGT--GTGCATAGACCACGGACC-T---C-GA-TCACACTAAGC-CAAGGCGAG-A-TC-AGTCCGCCATATG-GAGA-TGT-ACA-G-CA-TTCTCCTTCTTG-CTGTA--CGCTGGGG---T-CACAACGACC-GCCGTA--ATCCCCCTTTTAGTCCG-AA-A---
gi|12 : taacaatcaagtaccaAAGGCAGGAA-TC-A--GTGTC--ATGCGTAG-AGT-A-ATA-CAGTCCTC-----TGTCTG-AATC-G----G---TCCAC-AT--CC-AGCGTGAAAG-CC----TTAGT-TG-AACACATT---AATAGTAAACGGTGGAGTATACCGCGTCG--TCACA-----TGTATATTTAAGA-GTA--GGAA-ATA-TCG-AC------CTAAAAAata
gi|13 : ATATAAATTGGTGAAG-TAAACAAT--ATG-TT--AAA-C-TAA
gi|14 : tacGTTGTCA-------------GTCTGCC-A-----TTAG-------A-GTCAATAAAATG-TAAAGT---ATCC---AAATA-TGA-AGCAGATCT--GTCAG-AT-T--CTGT-GGTGTCCTTTATTATTA--TTGA-TAAAATCTTCAAAA-ATATGAAA----A-AT-G--TATGAAAatgcatggatatgaagtccacggaatcccaaaatacgcaacacagttaaggtgatcaacaacacatttccaataaaataaagcaagaaaaacatgccat
gi|15 : CAT--ACGC-AT-ATCATGCTCTT-GT-GTATCG-AA-ttactagaa
gi|15 : ACACATCATAA--CAGGTG---ATAGTGG--CATATTGCTA-CTT--AGAAA-----AGGA---TTGAgtnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncacacatcataacaggtgatagtggcatattgctacttagaaaaggattgat
gi|16 : catacgcatatcatgctcttgtgtatcgaagtnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncT-----GTTATATA-AATG-TAGTTATCA-------------GAATACCAA-----ATAGA------AAGTCAACATTAAGTTAAAATAACACCA---AAATA-AGA-AGCAAATATCGGTAAGTATATAGTTGTAGGTGTTCTTAG----TAATTCGAt
gi|18 : ATATAAATTGGCGAAG-AAAACAAT--GAA-TT--AAA-TGCAATCA---T-AGT-C---CC-AA--AACCA-T--AT---A-TA----CAAAT-TCGA--GC-A-T--AG---a
gi|19 : aatggctatatgaaattccattgtATATTTTACATCTTGA----CTATCACG-AGTATTTGT-TGCGCT-GGCCATCAGTAAGTGTTTTTCTAAC-AAATATG-TG--CTTGCAATTTCC
gi|2 : ctcgattGCGAAG-TTAACATT--GTG-TC--AAA-CGTAATCA---T-AAT-C---CA-AA--AA--A-C--AT---A-TA----CAAAA-TCGA--GT-G-T--AG---G-GCA-A---CACGGACC-T--CC-GA-CAA----AAGCGAAAGGTAGG-A-TC-AG-GTGCC--ATG-GAGG-AGT-A-A-G-CA-TCTTC-----TG-CTG-A--C-C----G---T-CAC-AC--CC-GCC-TG--AGCCC----TTAGT-CG-AA-A---T---AA-AGTAAAC---GGAAT-TACC-CGTAG--TCAAA-----TCT---------A-GTA--GGAA-A-A-T-G-ACA-----CTAACAAAA----GGGTATGAAACA-AA--TC--AGTC---AAC-ATAT-GACTTA--GTGATAATT-TG-------ATAT-C--G-CAAACAAGGTC-----ATTATAGCGACCAT--AG------AATTTG---CGAAAT--GAT--GACTTTAAACGATATTCGT-TATA----ACC-CTGC-AGCATCAACTTTTTTG--TTAGTAGTTGGCC------TCGCTTTAAAAAGTCCGCAT--ACGC-ATAG-CATGCTCTT-GCGGTATCG-AA-TCAACTGGGAGATATTACACACCATAAG-CAGGCG---ATAGTGGG-TATATTACTA-CAT--AGAAA-----AGGAAAGTTGATG-ATTGC---------AAAGTTAAAGTC--ATCACGCTT-----ATCATATA-AATA-TAGTTGTCA-------------GTCTGCC-A-----TTAG--------AGTCAATGTTAAG-TAAAAT---ATCC---AAATA-TGA-AGCAGATAT--GTCAG-AT-T--CTAT-GGTGTCCTTTA----TA--TCGAGT----TCTTCGGGATATATCAAAATGGA-ATAA-TTATGAAAATTATGATTGTTAATTGATAACACATCATCT-ATATA--CCAATATGTAAGGTTGAAGG-ACAC--GGC--AGTT---TTTTGTTTTTATCCCGTAA-CAGTTTCT-GTA-CAAA--TTCTGCTTCTATATGA-ATATAAAAATAA-GTCTGCCAATAAGGGGGCACAATTAGTGCCCATAG-GAAT-ACCTACG-GATTGTTGG--AAGACC-TGGTC--TC-CAAAGACCACA------TAAATATAT---TCTATGTGAGAAACTCAAGCATGCTTTTAAT-------ATCT--A----CT-TCA-GAAGTACTTG--TG---TGGACAATCAG--AGTGTTTTTCTAACAAAATATGTAG-TCTTG---TTTCCC---AACGACTAGAA-ATTCGTATTTTCGGGTG
gi|20 : atacaaaaaTAAATGAGCGAAGCTAAACAAT--GTGTTT--AAA-CGTAATCAAGTT-AAC-C---AA-AA--AA--A-T--AT---A-TA----C
gi|21 : atagtgaatttcaatTAT--GTCAG-AT-T--CTGT-GGTGTCCTTTA----T
gi|22 : ATATAAATTGGCGAAG-TTACCATT--GCA-TT--AAA-CGCAACCA---T-TAT-C---Ctacataatagccttctatattacgagtatgaaat
gi|23 : tcggtcttccaaG-GAGG-AGT-A-A-T-CA-TTATC-----TG-CCG-A--T-T----GC--T-CAC-AC--TT-GTCGTG--GGTC
gi|24 : ATATACATTGGTTGAG-TAAACAAT--GTG-TT--AAA-CATAATCA---T-AGT-C---tacgtcaa
gi|26 : actttcaATACAAATTGGCGAAG-TAAACAAT--GTA-TT--AAA-CGT
gi|27 : tacaT-CACC-CGTAG--TCAAA-----TGT---------A-GTA--GGGA-A-A-T-G-ACA-----TTA
gi|28 : TCAATGTTGAG-TAAAAT---ATCC---ACATA-TGA-AGTAGA
gi|29 : A-AGCAGATCT--GTCAG-AT-T--CTAT-GGTGTCCT
gi|3 : ATATAACTTGGCGAAG-TAAACAAT--GTG-TT--AAT-CGTAATGA---T-AGT-C---CC-AG--AA--A-C--AT---A-TA----CAAAG-TCGA--GT-G-T--AA---A-GCA-A---CACGGACC-T--CC-GA-TAA----AAGCGAA-GGCAGG-A-TC-AG-ATGCC--ATG-GAGA-AGT-A-A-G-CT-TCCTC-----TG-CTG-A--C-A----GG--T-CAC-AC--CC-ATCGTG--ACGGC----TTAGT-CG-AA-A---C---AA-AGTAAAC---GGGGT-TACC-CGTTG--TCAAT-----TCT---------A-GTA--CGAG-A-A-A-A-ACAAT---CTAACAA-A----GGGTATAAAACA-AC--TC--AGTC---AAC-ATAT-GACTTA--GTGATAATT-TG-------TAAT-C--G-CAAACCAGATT-----TTTATAGCGACCGT--AG------AATTTG---CGAAAT--GAT--GA------------------------------CTGC-AACATCAACATTTTAG--TTAGTAGTTGG------CTTCGCTTTAAAAAGTCCTCAT--ACGC-AT-GACATGCTCTT-GC-GTATCT-AA-TCAACTGGGAGACA-TACACACCATAAG-CAGGTG---ATAGT-GG-TACATTTCTG-CAT--AAA
gi|3 : atctcctcaataaattcgaagaaaatgtttaaggattaaggatatttagatacATA-AAT--T-GTTGTAA-------------GACTGCC-G-----TTAG-------A-GTCAATATCAGG-TAAAAT---ATCC---AAATA-TGA-AGCAGATAT--TTCAG-AA-T--CTGT-GGTGTCCTCTA----TT--TCGAGT----TCGTCGGGATATATC-ATATGGACAT-GCTTAT-AAAATTCTGATTGTttgttgtaagactgccgttagagtcaatatcaggtaaaatatccaaatatgaagcagatatttcagaatctgtggtgtcctctatttcgagttcgtcgggatatatcatatggacatgcttataaaattctgattgtcgtaaaattatttgacaaga
gi|4 : atctcctcaataaattcgaagaaaatgtttaaggattaaggatatttagatacatataacttggcgaagtaaacaatgtgttaatcgtaatgatagtcccagaaacatatacaaagtcgagtgtaaagcaacacggacctccgataaaagcgaaggcaggatcagatgccatggagaagtaagcttcctctgctgacaggtcacacccatcgtgacggcttagtcgaaacaaagtaaacggggttacccgttgtcaattctagtacgagaaaaacaatctaacaaagggtataaaacaactcagtcaacatatgacttagtgataatttgtaatcgcaaaccagatttttatagcgaccgtagaatttgcgaaatgatgactgcaacatcaacattttagttagtagttggcttcgctttaaaaagtcctcatacgcatgacatgctcttgcgtatctaatcaactgggagacatacacaccataagcaggtgatagtggtacatttctgcATACAAAAAGGCGAAG-TTAACATT--GTG-TC--AAA-CGTAATCA---T-AAT-C---CA-AA--AA--A-C--AT---A-TA----CAAAA-TCGA--GT-G-T--AG---G-GCA-A---CACGGACC-T--CC-GA-CGA----AAGTG-AAGGCAGG-A-AC-AG-GTGCC--ATG-GAGG-AAT-A-A-G-CA-TCCTC-----TG-CTG-A--C-CG---G---T-CAC-AC--CC-GCCGTG--AACCT----GTAGT-CG-AA-A---T---AA-AGTAAAC---GAGAT-TACC-CGTAG--TTAAA-----TCT---------A-GTA--G--A-A-A-T-A-ACACGT--CTAACAA-A----GGGTATAGAACA-AA--TC--AGTC---AAC-ATAT-GACTTA--GTGATAATT-TG-------TAAT-C--G-CAAACAAGGTC-----A-TATAGCGACCGT--AG------AATTTG---TGAAAT--GAT--GACTTTAAACGAGATTCGT-cgtaaaattatttgacaaga
gi|5 : tgtttccattttttgtttacctgaggttttgttagatcgagtaaactatttttgaagtttctgttcaagaaatgcttattaagtgtgttaactaatatgg-AGT-T---CA-AG--AG--A-G--ATTGAA-TG-----AAAA-TGGA--AT-G-C--AGTTAG-ACA-AA--CACAGACC-C--CT-GG-ATA----TATC-AGAGGTGGG-A-TC-AG-GTGTC---T---AGG-AGTTA-A-G-CG-TCTCC-----TG-TCA-A--T-C----G---G--AC-AC--T--ATTGT-------C----TTTTT-C--------------A-GGTAAAC---GGAGT-TAAC-CGTTG--TCAAAA----TCA---------ACGTA--TAAAGA-A-C-G-GC------CTAACAAC-----TGCTATGAAACA-CA--TC--GGAC---AGC-ATTT-AACCCA--ATGGCAG----G-------CCATGCTGG-CAAACAAAATC-----GTTATAACGA-CAT--AT------AATTTG---CGAAAT--GTT--GACTTTAAA-GTGA-CAGT-TGAA----ACCTCTGC-AACATCAAC-TTT--G--TCAGT
gi|6 : aaacataaaattatcatatctcttttcgATAGAAAATGGCGAAG-TTAACAAAA-GTA-ATCAAAA-CGTAATCA---T-AGT-C---CA-AA--AA--AAC--AC---A-TT----CAATA-T-GA--GT-G-TTTAG---G-GCA-A---CACGGACC-T--TC-GA-CGA----AAGCG-AAGGCAGG-ATTC-AG-GTG-C--ATG-GAGGAAGT-A-A-G-GC-TCCTC-----TG-CTG-A--C-CG---G---T-CAC-A---CC-GCCGTG--AGCCC----TTAGT-CGAAA-A---TAA-AA-AG-AAAC---GGGAT-TACC-CGTGG--TCAAA-----TCT---------A-GTA--GGTA-A-A-T-G-A
gi|7 : tttgaatcgaggcaagctacttacagacaagttgttgttggcagggggtttcttaaACATC--GTG-TT--AAAACATAAT-A---T-AAT-TACTCA-AA--AA--A----AT---A-TAA---CAAAACTCGAAAGA-G-TTGAG---G-GCA-A---CACGGATC-CAACCAGACCAA----AAGCGAAgcaattttcgcatatttcgagcaaaggtaaacacaagta
gi|8 : agagtaagatctacagcatcaagtcttgaacgttgtagggttaccattgagtttataatggtctttcatacgataaaccgatgtcccgtgtcaacagcagagtcgcatcgaataaagattcctccctgccaattagtgccctgagtggccgagttaatttgcagcacaatcactcttcgcaatgtacgtcttcctatacaaatacttagaggcccgaaagttccATATAAAT-GGCGAAG-TAAACAAT--GTG-AC--AAT-TGTAATCA---T-AGT-C---CCCAA--AA--A-C--AT---A-AA----CAAAA-TCGA--GT-G-T--AG---G-GCA-A---CACGGACC-T--CC-GA-CAA----AAGCG-AAGGCAGG-A-TC-AG-GTCCC--ATG-AAGG-AGT-A-A-A-CA-TTCTC-----TG-CTG-A--T-CG---G---C-CAC-AC--CC-GCCGTA--AGCCC----GTAGT-CG-AA-T---T---AA-AGTAAAC---G-----------GTTG--TTAAA-----TCA---------A-CTG--AGAG-ACA-T-ATACA-----CCATAAGCA----GG
gi|8 : gtaaattgccactgaatttctcaaacattaaagatctttgaataataagtatactttataag-AA-TCAACTGAGAGACAT-ATACACCATAAG-CAGGTG---ATAGTAGtgatagtagtctg
gi|9 : gtaaattgccactgaatttctcaaacattaaagatctttgaataataagtatactttataagatataaatggcgaagtaaacaatgtgacaattgtaatcatagtccccaaaaacataaacaaaatcgagtgtagggcaacacggacctccgacaaaagcgaaggcaggatcaggtcccatgaaggagtaaacattctctgctgatcggccacacccgccgtaagcccgtagtcgaattaaagtaaacggttgttaAATTAGCGAAG-TTAACATT--GTA-TT--AAA-CGTAATCA---T-AAT-C---CT-AAGCAA--A-C--AT---A-TATACACAAAG-TCAA--AT-G-T--AG---GCGAA-A---CACGGACC-T--CC-GA-CAA----AAGC-AAAGGCAGG-T-TTTAG-GTGC---ATG-GAGG-AGT-C-A-G-CA-TC-TC-----TG-CTG-A--C-C--------T-CAC-AT--CC-GCCGTG--AGCCG----TTAGT-CG-AA-A---T---AA-AGTAAAC---GGGAT-TACC-TGTAG--TCAAtctg
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|17 ): AAGATGTATCGTATTTTCAAACTAGTAAGAAAGTGTATAGCTTCTGGGCTTTAGAACGTTCGAGACAAGCAGTCCACCAACAGAGGTGTTGAACCGTGATCTAATGCA
Unaligned ( gi|25 ): TGTAGGTATGCTTCATGCATCTTTCAACAAAAGAACAGAAAA
Alignments
lowQualScore : 111 11 3333333333 1111 1111111 11111 111111111 333333 222222 11 11 111 11 222222222 11 2222222 2222222222 111 11 11 1 22222222222222 1 1 2 11 4444444 11 1 2222 1 1 111 11 1 11 33333 1111 1 333333333 111 33333 1 11 4444444444444 2222222 333333333 222 111 11111111 2222 1 2222 1 11 1 1 11 11 222 1 1 1 1 11 1 1 1 1 1 1 1 1 1 1 11 11 11 1 222222 222 222 44444444444444444444 1 111 1 3333 22 22222 222 222 1
lowQualScore : 2 2 0 66 2 33 2 555 2 2 888 3 44 44 5555 555 3 9999 6 77 3 3 99 999 7 3 000 3 55 3 3 6 7777 00 7 3 3 3 2 55 3 3 3 3 3 3 3 88888 3 3 44 0000000000 3 3 44 3 44 2222 3 3 3 3333333 4 777 3 3 3 1 55 55555 777777777 4 66 0 4 8 4 4 4 111111 444444 8 11 11 444 8 8 11 3 0 8 888888888 8 11 8 0 5555555 0 3333333333 444 11 11 0 8 99999999999999 0 0 3 0 77 33 2 0000000 6 33 0 6666 2 0 0 8 8 66 8 444 3 22 1 0 33 33333 2222 5 777777777 999 33333 3 0 66 3 4444444444444 1 7777777 999999999 0 6 000 111 6 5 77 5 99999 5 66666666 6 8888 7 7 7 3 9999 6 1 5 77 1 1 1 5 5 88 88 111 1 5 5 5 1 5 88 5 5 5 5 1 1 5 5 5 5 1 5 5 88 66 1 88 5 999999 1 111 000 55555555555555555555 3 666 2 2222 3 00 7 33333 333 000 5 22 1
lowQualScore : . . . .. . .. . ... . . ... . .. .. .... ... . .... . .. . . .. ... . . ... . .. . . . .... .. . . . . . .. . . . . . . . ..... . . .. .......... . . .. . .. .... . . . ....... . ... . . . . .. ..... ......... . .. . . . . . . ...... ...... . .. .. ... . . .. . . . ......... . .. . . ....... . .......... ... .. .. . . .............. . . . . .. .. . ....... . .. . .... . . . . . .. . ... . .. . . .. ..... .... . ......... ... ..... . . .. . ............. . ....... ......... . . ... ... . . .. . ..... . ........ . .... . . . . .... . . . .. . . . . . .. .. ... . . . . . . .. . . . . . . . . . . . . . .. .. . .. . ...... . ... ... .................... . ... . .... . .. . ..... ... ... . .. .
lowQualScore : 4 9 3 33 7 44 5 000 7 7 333 1 22 22 5555 444 1 6666 7 99 3 3 22 222 3 6 000 6 00 6 6 4 7777 22 3 6 6 6 0 00 3 3 3 3 3 3 3 33333 3 3 66 6666666666 3 3 66 3 66 7777 6 6 6 8888888 0 000 9 6 6 0 55 66666 888888888 4 11 1 4 9 4 4 4 444444 222222 0 00 00 000 0 0 00 8 8 0 444444444 0 00 0 6 4444444 8 2222222222 000 00 00 0 0 33333333333333 0 0 2 0 88 88 5 0000000 7 88 0 5555 5 0 0 0 0 55 0 000 2 55 0 0 88 33333 0000 5 000000000 000 33333 2 0 55 2 0000000000000 4 6666666 888888888 3 7 888 777 7 7 99 7 77777 7 44444444 7 3333 3 3 3 3 3333 7 0 5 55 0 0 0 5 5 00 55 000 0 0 0 0 0 0 55 5 5 0 0 0 0 0 0 5 5 0 5 0 00 55 0 00 5 555555 0 555 555 33333333333333333333 3 777 0 3333 7 77 3 00000 333 555 5 00 0
consensus : ATATAAATTGGCGAAG-TAAACAAT--GTG-TT--AAA-CGTAATCA---T-AGT-C---CA-AA--AA--A-C--AT---A-TA----CAAAA-TCGA--GT-G-T--AG---G-GCA-A---CACGGACC-T--CC-GA-CGA----AAGCGAAAGGCAGG-A-TC-AG-GTGCC--ATG-GAGG-AGT-A-A-G-CA-TCCTC-----TG-CTG-A--C-C----G---T-CAC-AC--CC-GCCGTG--AGCCC----TTAGT-CG-AA-A---T---AA-AGTAAAC---GGGGT-TACC-CGTNG--TCAAA-----TCT---------A-GTA--GGAA-A-A-T-G-ACA-----CTAACAACA----GGGTATGAAACA-AA--TC--AGTC---AAC-ATAT-GACTTA--GTGATAATT-TG-------CAAT-C--G-CAAACAAGGTC-----GTTATAGCGACCGT--AG------AATTTG---CGAAAT--GAT--GACTTTAAA-CGANATTCGT-TATA--ACC-CTGC-AACATCAAC-TTTTNG--TTAGTAGTTGGCC----CTTCGCTTTAAAAAGTCCTCAT--ACGC-AT-G-CATGCTCTT-GC-GTATCG-AA-TCAACTGGGAGACATTACACACCATAAG-CAGGTG---ATAGTGGG-TACATTNCTA-CAT--AGAAA-----AGGAAAGTTGACGTATTGCATTGGTCCGAGAGTCAAAGTCCANTCACGCTT-----ATCATATA-AATG-TAGTTGTCA-------------GACTGCC-G-----TTAGA------AAGTCAATATTAAG-TAAAAT---ATCC---AAATA-TGA-AGCAGATAT--GTCAG-AT-T--CTGT-GGTGTCCTTTA----TA--TCGAGT----TCTTCGGGATATATCAAAATGGA-AT-G-TTATGAAAATTNTGATTGTTAATTGATAACACATCATCTAATATAGCCCNATANGNAAGGTTGAAGGTACACCTGGCAAAGTTTCATTTTGNTTTCATCCCGTAAGCAGTTCCTCGNAGCAAATTTTCTGCTTCTGTATGATATATAAAAATAAGGTCTGCCAGTNANGGGGCACAATTAGTGCCCATAGTGAATAACCNACGAGATTGTTGGGAAAGACNATNGTCTGTCACAAAGACCACAGGATATTAGANATATTTATCTATGTGAGGAACCCAAGCATGCTCTTAATA--TTT--CATCT--A----CT-TCA-G-AGTACTTGT-TG-GNTGGCAATCAG-AAGTGTTTTTCTAACAAAATATGTTG-TCTTG---TTTCCCGCAGACGACCAGAATATTNNTATTTTCGGNTG
Reference ( family-235 ) : ATATAAATTGGCGAAG-TAAACAAT--GTG-TT--AAA-CGTAATCA---T-AGT-C---CA-AA--AA--A-C--AT---A-TA----CAAAA-TCGA--GT-G-T--AG---G-GCA-A---CACGGACC-T--CC-GA-CGA----AAGCGAAAGGCAGG-A-TC-AG-GTGCC--ATG-GAGG-AGT-A-A-G-CA-TCCTC-----TG-CTG-A--C-C----G---T-CAC-AC--CC-GCCGTG--AGCCC----TTAGT-CG-AA-A---T---AA-AGTAAAC---GGGGT-TACC-CGTNG--TCAAA-----TCT---------A-GTA--GGAA-A-A-T-G-ACA-----CTAACAACA----GGGTATGAAACA-AA--TC--AGTC---AAC-ATAT-GACTTA--GTGATAATT-TG-------CAAT-C--G-CAAACAAGGTC-----GTTATAGCGACCGT--AG------AATTTG---CGAAAT--GAT--GACTTTAAA-CGAGATTCGT-TGTA--ACC-CTGC-AACATCAAC-TTTTNG--TTAGTAGTTGGCC----CTTCGCTTTAAAAAGTCCTCAT--ACGC-AT-G-CATGCTCTT-GC-GTATCG-AA-TCAACTGGGAGACATTACACACCATAAG-CAGGTG---ATAGTGGG-TACATTNCTA-CAT--AGAAA-----AGGAAAGTTGACGTATTGCATTGGTCCGAGAGTCAAAGTCCANTCACGCTT-----ATCATATA-AATG-TAGTTGTCA-------------GACTGCC-G-----TTAGA------AAGTCAATATTAAG-TAAAAT---ATCC---AAATA-TGA-AGCAGATAT--GTCAG-AT-T--CTGT-GGTGTCCTTTA----TA--TCGAGT----TCTTCGGGATATATCAAAATGGA-AT-G-TTATGAAAATTNTGATTGTTAATTGATAACACATCATCTAATATAGCCCNATANGNAAGGTTGAAGGTACACCTGGCAAAGTTTCATTTTGNTTTCATCCCGTAAGCAGTTCCTCGNAGCAAATTTTCTGCTTCTGTATGATATATAAAAATAAGGTCTGCCAGTNANGGGGCACAATTAGTGCCCATAGTGAATAACCNACGAGATTGTTGGGAAAGACNATNGTCTGTCACAAAGACCACAGGATATTAGANATATTTATCTATGTGAGGAACCCAAGCATGCTCTTAATA--TTT--CATCT--A----CT-TCA-G-AGTACTTGT-TG-GCTGGCAATCAG-AAGTGTTTTTCTAACAAAATATGTTG-TCTTG---TTTCCCGCAGACGACCAGAATATTNNTATTTTCGGNTG
gi|1 : TGTAAAT-GGCGAAG-TAA-CAAGAGGTA-TC--AAA-CGTACTCA---T-AG--C---CA-AA--AA--A-C--AT-----------CACAA-TCGA--GT-GGT--AG---G-GCA-A---CACGGACCGT--CT-GA-CGA----AA-CGAAGCACAGGAA-TC-AG-GTG-C--A-G-GA-G-AGT-A-A-GCCA-TCC-A-----TG-CTG-A--CGC----GGGTT-CAC-AC--CCAGCCGTG--AGCTCTG--TTCGT-CG-GA-A---TTACAA-AGTAAAC---GAG---TACC-CGTCGCTTCGAAGATCCTCT---------A-GTATCGCAA-A-ACT-G-ACAGTGCTCCGACAACATATCGGGTAGGGAACACAAACTCCAAGCTACAAACGATATCCATTTAACGTG-TAATTCTGCCTAAAACAGC-C--GCCAAACCCGGTCCATTGATTA-GGCGACCGTTCAACGCTTTAATTTGTATCGTACTCGGATTCGA-TTTAAA-CGAGATGTGTGTATACCACC-CGGCAAACATC-AC-TTTTGGATTTA-TAGTTGCCCCTCTCTTTGCTTTAAAAA-TCATCATGAACGCGAT-G--AT-CCCTTGGC-GTATCGCAATTCAACTGAGAGACATTACACAC--TAAGCCAGTTGGATATGGTGAGTTACACTTCTAGCATGCAGAAGCTAACAGGAAAG-TGACATATTGCATTGGTCCGAGAGTCAAAGTTCATTCACGTTTTTACCATCAT-TATGATGTTAGTTCTCATTGTTTTTTTCCTGACTGTG-GCTTATTTAGAGGACTCAAGTCGATTTTAAG-TAAAATTG-CTTCGATAGATATTGATAGCA-CTAT--CTTGG-G-----GTGC-GGTGTCCTTTG----T
gi|1 : ttttattgtgaagtttttaaaaatttttctctaaatTCTAATATAGCCCTATAAAGAAAGT-GAAGGTACATCTGGCAAAGTTTCATTTTGATTTCATCC-GTAAGCAGTTCCTCGAAGCAAATTTTCTGCTTC-GTATGATATATAAAAATAAGGTCTGC-AGTTATGGG-CACAATTAGTGCC-ATAGTGAATAACCAACAAGATT-TTGGGAAAGACAATTGTCTGTCACAAAGACTACAGGATATTAGAGATATTTATCTAT---AAGAACCCAAGCATGCTCTTAATATGTTT--CATTT--AATCCCT-TCA-G-AGTA-TTGTGTG-GGTTGCAATAAC-AAGTGGTTCTCTGACAAAATATGTTATTCTTG---TTTTCCGCAGATGACCAGAATATTGTTATTTTCGGTTGggtgttgcccttttaagagagagagatccaacacatggtactgtatagactgctacgtaataatattgaaacttgaattatgtacagcttgaatactacgcaccagcgtatgggagtctaatatagccctataaagaaagtgaaggtacatctggcaaagtttcattttgatttcatccgtaagcagttcctcgaagcaaattttctgcttcgtatgatatataaaaataaggtctgcagttatgggcacaattagtgccatagtgaataaccaacaagattttgggaaagacaattgtctgtcacaaagactacaggatattagagatatttatctataagaacccaagcatgctcttaatatgtttcatttaatcccttcagagtattgtgtgggttgcaataacaagtggttctctgacaaaatatgttattcttgttttccgcagatgaccagaatattgttattttcggttgccttttggttcaactaaaggcaattatcaattatctgaataagtcctagattttgtaatttatttatcgaggaggaattttgtatatattgacagttgttcggatgaaatcaagtatggttttgatggcaatcaacattttagaaaaaatgtcgagacttgaagttatgtctaaagtctttagagttttgtgaagaatccaacaatctgattgtacaacccaacttctggaaattaattgtagttggaatgagtgcat
gi|10 : ttttattgtgaagtttttaaaaatttttctctaaattgtaaatggcgaagtaacaagaggtatcaaacgtactcatagccaaaaaacatcacaatcgagtggtagggcaacacggaccgtctgacgaaacgaagcacaggaatcaggtgcaggagagtaagccatccatgctgacgcgggttcacacccagccgtgagctctgttcgtcggaattacaaagtaaacgagtacccgtcgcttcgaagatcctctagtatcgcaaaactgacagtgctccgacaacatatcgggtagggaacacaaactccaagctacaaacgatatccatttaacgtgtaattctgcctaaaacagccgccaaacccggtccattgattaggcgaccgttcaacgctttaatttgtatcgtactcggattcgatttaaacgagatgtgtgtataccacccggcaaacatcacttttggatttatagttgcccctctctttgctttaaaaatcatcatgaacgcgatgatcccttggcgtatcgcaattcaactgagagacattacacactaagccagttggatatggtgagttacacttctagcatgcagaagctaacaggaaagtgacatattgcattggtccgagagtcaaagttcattcacgtttttaccatcattatgatgttagttctcattgtttttttcctgactgtggcttatttagaggactcaagtcgattttaagtaaaattgcttcgatagatattgatagcactatcttggggtgcggtgtcctttgtggtgttgcccttttaagagagagagatccaacacatggtactgtatagactgctacgtaataatattgaaacttgaattatgtacagcttgaatactacgcaccagcgtatgggagATATAAATTGGCGAAG-TAAACAAT--GTA-TT--AAA-CGTAATCA---T-AGTCC---CA-AA--AA--A-CATAT---A-TA----CAAAA-TCGA--GT-G-T--AG---G-GCA-A---CACGGACC-T--TC-GA-C-A----AAGCGAAA-GCAGG-A-TC-GG-GTGCA--ATG-GAGG-AGT-A-A-G-CA-TCCTC-----TG-CTG-A--C-TG---G---T-CAC-AC--CC-GCCGTG--AGCCC----GTAGT-CA-AA-A---T---AA-AGTAAAC---AGGGT-TACC-CGTccttttggttcaactaaaggcaattatcaattatctgaataagtcctagattttgtaatttatttatcgaggaggaattttgtatatattgacagttgttcggatgaaatcaagtatggttttgatggcaatcaacattttagaaaaaatgtcgagacttgaagttatgtctaaagtctttagagttttgtgaagaatccaacaatctgattgtacaacccaacttctggaaattaattgtagttggaatgagtgcat
gi|11 : gattattttcattg--AAA-CGTAATCA---TCAGC-CAT-TA-TA--AA--A-C--AC---ATTA----CAAAATTCGGC-GTCG-T--AGT--GTGCATAGACCACGGACC-T---C-GA-TCACACTAAGC-CAAGGCGAG-A-TC-AGTCCGCCATATG-GAGA-TGT-ACA-G-CA-TTCTCCTTCTTG-CTGTA--CGCTGGGG---T-CACAACGACC-GCCGTA--ATCCCCCTTTTAGTCCG-AA-A---
gi|12 : taacaatcaagtaccaAAGGCAGGAA-TC-A--GTGTC--ATGCGTAG-AGT-A-ATA-CAGTCCTC-----TGTCTG-AATC-G----G---TCCAC-AT--CC-AGCGTGAAAG-CC----TTAGT-TG-AACACATT---AATAGTAAACGGTGGAGTATACCGCGTCG--TCACA-----TGTATATTTAAGA-GTA--GGAA-ATA-TCG-AC------CTAAAAAata
gi|13 : ATATAAATTGGTGAAG-TAAACAAT--ATG-TT--AAA-C-TAA
gi|14 : tacGTTGTCA-------------GTCTGCC-A-----TTAGA--------GTCAATAAAATG-TAAAGT---ATCC---AAATA-TGA-AGCAGATCT--GTCAG-AT-T--CTGT-GGTGTCCTTTATTATTA--TTGA-TAAAATCTTCAAAA-ATATGAAA----A-AT-G--TATGAAAatgcatggatatgaagtccacggaatcccaaaatacgcaacacagttaaggtgatcaacaacacatttccaataaaataaagcaagaaaaacatgccat
gi|15 : CAT--ACGC-AT-ATCATGCTCTT-GT-GTATCG-AA-ttactagaa
gi|15 : ACACATCATAA--CAGGTG---ATAGTGG--CATATTGCTA-CTT--AGAAA-----AGGA---TTGAgtnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncacacatcataacaggtgatagtggcatattgctacttagaaaaggattgat
gi|16 : catacgcatatcatgctcttgtgtatcgaagtnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncT-----GTTATATA-AATG-TAGTTATCA-------------GAATACCAA-----ATAGA------AAGTCAACATTAAGTTAAAATAACACCA---AAATA-AGA-AGCAAATATCGGTAAGTATATAGTTGTAGGTGTTCTTAG----TAATTCGAt
gi|18 : ATATAAATTGGCGAAG-AAAACAAT--GAA-TT--AAA-TGCAATCA---T-AGT-C---CC-AA--AACCA-T--AT---A-TA----CAAAT-TCGA--GC-A-T--AG---a
gi|19 : aatggctatatgaaattccattgtATA--TTTTACATCTTGA----CTATCACG-AGTATTTGT-TGCGCTGGCCATCAGTAAGTGTTTTTCTAAC-AAATATG-TG--CTTGCAATTTCC
gi|2 : ctcgattGCGAAG-TTAACATT--GTG-TC--AAA-CGTAATCA---T-AAT-C---CA-AA--AA--A-C--AT---A-TA----CAAAA-TCGA--GT-G-T--AG---G-GCA-A---CACGGACC-T--CC-GA-CAA----AAGCGAAAGGTAGG-A-TC-AG-GTGCC--ATG-GAGG-AGT-A-A-G-CA-TCTTC-----TG-CTG-A--C-C----G---T-CAC-AC--CC-GCC-TG--AGCCC----TTAGT-CG-AA-A---T---AA-AGTAAAC---GGAAT-TACC-CGTAG--TCAAA-----TCT---------A-GTA--GGAA-A-A-T-G-ACA-----CTAACAAAA----GGGTATGAAACA-AA--TC--AGTC---AAC-ATAT-GACTTA--GTGATAATT-TG-------ATAT-C--G-CAAACAAGGTC-----ATTATAGCGACCAT--AG------AATTTG---CGAAAT--GAT--GACTTTAAA-CGATATTCGT-TATA--ACC-CTGC-AGCATCAACTTTTTTG--TTAGTAGTTGGCC------TCGCTTTAAAAAGTCCGCAT--ACGC-ATAG-CATGCTCTT-GCGGTATCG-AA-TCAACTGGGAGATATTACACACCATAAG-CAGGCG---ATAGTGGG-TATATTACTA-CAT--AGAAA-----AGGAAAGTTGATG-ATTGC---------AAAGTTAAAGTC--ATCACGCTT-----ATCATATA-AATA-TAGTTGTCA-------------GTCTGCC-A-----TTAG--------AGTCAATGTTAAG-TAAAAT---ATCC---AAATA-TGA-AGCAGATAT--GTCAG-AT-T--CTAT-GGTGTCCTTTA----TA--TCGAGT----TCTTCGGGATATATCAAAATGGA-ATAA-TTATGAAAATTATGATTGTTAATTGATAACACATCATCT-ATATA--CCAATATGTAAGGTTGAAGG-ACAC--GGC--AGTT---TTTTGTTTTTATCCCGTAA-CAGTTTCT-GTA-CAAA--TTCTGCTTCTATATGA-ATATAAAAATAA-GTCTGCCAATAAGGGGGCACAATTAGTGCCCATAG-GAAT-ACCTACG-GATTGTTGG--AAGACC-TGGTC--TC-CAAAGACCACA------TAAATATAT---TCTATGTGAGAAACTCAAGCATGCTTTTAAT---------ATCT--A----CT-TCA-GAAGTACTTGT----GTGGACAATCAG--AGTGTTTTTCTAACAAAATATGTAG-TCTTG---TTTCCC---AACGACTAGAA-ATTCGTATTTTCGGGTG
gi|20 : atacaaaaaTAAATGAGCGAAGCTAAACAAT--GTGTTT--AAA-CGTAATCAAGTT-AAC-C---AA-AA--AA--A-T--AT---A-TA----C
gi|21 : atagtgaatttcaatTAT--GTCAG-AT-T--CTGT-GGTGTCCTTTA----T
gi|22 : ATATAAATTGGCGAAG-TTACCATT--GCA-TT--AAA-CGCAACCA---T-TAT-C---Ctacataatagccttctatattacgagtatgaaat
gi|23 : tcggtcttccaaG-GAGG-AGT-A-A-T-CA-TTATC-----TG-CCG-A--T-T----GC--T-CAC-AC--TT-GTCGTG--GGTC
gi|24 : ATATACATTGGTTGAG-TAAACAAT--GTG-TT--AAA-CATAATCA---T-AGT-C---tacgtcaa
gi|26 : actttcaATACAAATTGGCGAAG-TAAACAAT--GTA-TT--AAA-CGT
gi|27 : tacaT-CACC-CGTAG--TCAAA-----TGT---------A-GTA--GGGA-A-A-T-G-ACA-----TTA
gi|28 : TCAATGTTGAG-TAAAAT---ATCC---ACATA-TGA-AGTAGA
gi|29 : A-AGCAGATCT--GTCAG-AT-T--CTAT-GGTGTCCT
gi|3 : ATATAACTTGGCGAAG-TAAACAAT--GTG-TT--AAT-CGTAATGA---T-AGT-C---CC-AG--AA--A-C--AT---A-TA----CAAAG-TCGA--GT-G-T--AA---A-GCA-A---CACGGACC-T--CC-GA-TAA----AAGCGAA-GGCAGG-A-TC-AG-ATGCC--ATG-GAGA-AGT-A-A-G-CT-TCCTC-----TG-CTG-A--C-A----GG--T-CAC-AC--CC-ATCGTG--ACGGC----TTAGT-CG-AA-A---C---AA-AGTAAAC---GGGGT-TACC-CGTTG--TCAAT-----TCT---------A-GTA--CGAG-A-A-A-A-ACAAT---CTAACAA-A----GGGTATAAAACA-AC--TC--AGTC---AAC-ATAT-GACTTA--GTGATAATT-TG-------TAAT-C--G-CAAACCAGATT-----TTTATAGCGACCGT--AG------AATTTG---CGAAAT--GAT--GA-----------------------------CTGC-AACATCAACATTTTAG--TTAGTAGTTGG------CTTCGCTTTAAAAAGTCCTCAT--ACGC-AT-GACATGCTCTT-GC-GTATCT-AA-TCAACTGGGAGACA-TACACACCATAAG-CAGGTG---ATAGT-GG-TACATTTCTG-CAT--AAA
gi|3 : atctcctcaataaattcgaagaaaatgtttaaggattaaggatatttagatacATA-AAT--T-GTTGTAA-------------GACTGCC-G-----TTAGA--------GTCAATATCAGG-TAAAAT---ATCC---AAATA-TGA-AGCAGATAT--TTCAG-AA-T--CTGT-GGTGTCCTCTA----TT--TCGAGT----TCGTCGGGATATATC-ATATGGACAT-GCTTAT-AAAATTCTGATTGTttgttgtaagactgccgttagagtcaatatcaggtaaaatatccaaatatgaagcagatatttcagaatctgtggtgtcctctatttcgagttcgtcgggatatatcatatggacatgcttataaaattctgattgtcgtaaaattatttgacaaga
gi|4 : atctcctcaataaattcgaagaaaatgtttaaggattaaggatatttagatacatataacttggcgaagtaaacaatgtgttaatcgtaatgatagtcccagaaacatatacaaagtcgagtgtaaagcaacacggacctccgataaaagcgaaggcaggatcagatgccatggagaagtaagcttcctctgctgacaggtcacacccatcgtgacggcttagtcgaaacaaagtaaacggggttacccgttgtcaattctagtacgagaaaaacaatctaacaaagggtataaaacaactcagtcaacatatgacttagtgataatttgtaatcgcaaaccagatttttatagcgaccgtagaatttgcgaaatgatgactgcaacatcaacattttagttagtagttggcttcgctttaaaaagtcctcatacgcatgacatgctcttgcgtatctaatcaactgggagacatacacaccataagcaggtgatagtggtacatttctgcATACAAAAAGGCGAAG-TTAACATT--GTG-TC--AAA-CGTAATCA---T-AAT-C---CA-AA--AA--A-C--AT---A-TA----CAAAA-TCGA--GT-G-T--AG---G-GCA-A---CACGGACC-T--CC-GA-CGA----AAGTG-AAGGCAGG-A-AC-AG-GTGCC--ATG-GAGG-AAT-A-A-G-CA-TCCTC-----TG-CTG-A--C-CG---G---T-CAC-AC--CC-GCCGTG--AACCT----GTAGT-CG-AA-A---T---AA-AGTAAAC---GAGAT-TACC-CGTAG--TTAAA-----TCT---------A-GTA--G--A-A-A-T-A-ACACGT--CTAACAA-A----GGGTATAGAACA-AA--TC--AGTC---AAC-ATAT-GACTTA--GTGATAATT-TG-------TAAT-C--G-CAAACAAGGTC-----A-TATAGCGACCGT--AG------AATTTG---TGAAAT--GAT--GACTTTAAA-CGAGATTCGT-cgtaaaattatttgacaaga
gi|5 : tgtttccattttttgtttacctgaggttttgttagatcgagtaaactatttttgaagtttctgttcaagaaatgcttattaagtgtgttaactaatatgg-AGT-T---CA-AG--AG--A-G--ATTGAA-TG-----AAAA-TGGA--AT-G-C--AGTTAG-ACA-AA--CACAGACC-C--CT-GG-ATA----TATC-AGAGGTGGG-A-TC-AG-GTGTC---T---AGG-AGTTA-A-G-CG-TCTCC-----TG-TCA-A--T-C----G---G--AC-AC--T--ATTGT-------C----TTTTT-C--------------A-GGTAAAC---GGAGT-TAAC-CGTTG--TCAAAA----TCA---------ACGTA--TAAAGA-A-C-G-GC------CTAACAAC-----TGCTATGAAACA-CA--TC--GGAC---AGC-ATTT-AACCCA--ATGGCAG----G-------CCATGCTGG-CAAACAAAATC-----GTTATAACGA-CAT--AT------AATTTG---CGAAAT--GTT--GACTTTAAAGTGACA---GT-TGAA--ACCTCTGC-AACATCAAC-TTT--G--TCAGT
gi|6 : aaacataaaattatcatatctcttttcgATAGAAAATGGCGAAG-TTAACAAAA-GTA-ATCAAAA-CGTAATCA---T-AGT-C---CA-AA--AA--AAC--AC---A-TT----CAATA-T-GA--GT-G-TTTAG---G-GCA-A---CACGGACC-T--TC-GA-CGA----AAGCG-AAGGCAGG-ATTC-AG-GTG-C--ATG-GAGGAAGT-A-A-G-GC-TCCTC-----TG-CTG-A--C-CG---G---T-CAC-A---CC-GCCGTG--AGCCC----TTAGT-CGAAA-A---TAA-AA-AG-AAAC---GGGAT-TACC-CGTGG--TCAAA-----TCT---------A-GTA--GGTA-A-A-T-G-A
gi|7 : tttgaatcgaggcaagctacttacagacaagttgttgttggcagggggtttcttaaACATC--GTG-TT--AAAACATAAT-A---T-AAT-TACTCA-AA--AA--A----AT---A-TAA---CAAAACTCGAAAGA-G-TTGAG---G-GCA-A---CACGGATC-CAACCAGACCAA----AAGCGAAgcaattttcgcatatttcgagcaaaggtaaacacaagta
gi|8 : agagtaagatctacagcatcaagtcttgaacgttgtagggttaccattgagtttataatggtctttcatacgataaaccgatgtcccgtgtcaacagcagagtcgcatcgaataaagattcctccctgccaattagtgccctgagtggccgagttaatttgcagcacaatcactcttcgcaatgtacgtcttcctatacaaatacttagaggcccgaaagttccATATAAAT-GGCGAAG-TAAACAAT--GTG-AC--AAT-TGTAATCA---T-AGT-C---CCCAA--AA--A-C--AT---A-AA----CAAAA-TCGA--GT-G-T--AG---G-GCA-A---CACGGACC-T--CC-GA-CAA----AAGCG-AAGGCAGG-A-TC-AG-GTCCC--ATG-AAGG-AGT-A-A-A-CA-TTCTC-----TG-CTG-A--T-CG---G---C-CAC-AC--CC-GCCGTA--AGCCC----GTAGT-CG-AA-T---T---AA-AGTAAAC---G-----------GTTG--TTAAA-----TCA---------A-CTG--AGAG-ACA-T-ATACA-----CCATAAGCA----GG
gi|8 : gtaaattgccactgaatttctcaaacattaaagatctttgaataataagtatactttataag-AA-TCAACTGAGAGACAT-ATACACCATAAG-CAGGTG---ATAGTAGtgatagtagtctg
gi|9 : gtaaattgccactgaatttctcaaacattaaagatctttgaataataagtatactttataagatataaatggcgaagtaaacaatgtgacaattgtaatcatagtccccaaaaacataaacaaaatcgagtgtagggcaacacggacctccgacaaaagcgaaggcaggatcaggtcccatgaaggagtaaacattctctgctgatcggccacacccgccgtaagcccgtagtcgaattaaagtaaacggttgttaAATTAGCGAAG-TTAACATT--GTA-TT--AAA-CGTAATCA---T-AAT-C---CT-AAGCAA--A-C--AT---A-TATACACAAAG-TCAA--AT-G-T--AG---GCGAA-A---CACGGACC-T--CC-GA-CAA----AAGC-AAAGGCAGG-T-TTTAG-GTGC---ATG-GAGG-AGT-C-A-G-CA-TC-TC-----TG-CTG-A--C-C--------T-CAC-AT--CC-GCCGTG--AGCCG----TTAGT-CG-AA-A---T---AA-AGTAAAC---GGGAT-TACC-TGTAG--TCAAtctg
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|17 ): AAGATGTATCGTATTTTCAAACTAGTAAGAAAGTGTATAGCTTCTGGGCTTTAGAACGTTCGAGACAAGCAGTCCACCAACAGAGGTGTTGAACCGTGATCTAATGCA
Unaligned ( gi|25 ): TGTAGGTATGCTTCATGCATCTTTCAACAAAAGAACAGAAAA
Alignments
lowQualScore : 111 11 3333333333 1111 1111111 11111 111111111 333333 222222 11 11 111 11 222222222 11 2222222 2222222222 111 11 11 1 222222222222 1 1 2 11 4444444 11 1 2222 1 1 111 11 1 11 33333 1111 1 333333333 111 33333 1 11 4444444444444 2222222 333333333 222 111 11111111 2222 1 2222 1 11 1 1 11 11 222 1 1 1 1 11 1 1 1 1 1 1 1 1 1 1 11 11 11 1 222222 222 222 44444444444444444444 1 111 1 3333 22 22222 222 222 1
lowQualScore : 2 2 0 66 2 33 2 555 2 2 888 3 44 44 5555 555 3 9999 6 77 3 3 99 999 7 3 000 3 55 3 3 6 7777 00 7 3 3 3 2 55 3 3 3 3 3 3 3 88888 3 3 44 0000000000 3 3 44 3 44 2222 3 3 3 3333333 4 777 3 3 3 1 55 55555 777777777 4 66 0 4 8 4 4 4 111111 444444 8 11 11 444 8 8 11 3 0 8 888888888 8 11 8 0 5555555 0 3333333333 444 11 11 0 8 3 555555555555 0 0 3 0 77 33 2 0000000 6 33 0 6666 2 0 0 8 8 66 8 444 3 22 1 0 33 33333 2222 5 777777777 999 33333 3 0 66 3 4444444444444 1 7777777 999999999 0 6 000 111 6 5 77 5 99999 5 66666666 6 8888 7 7 7 3 9999 6 1 5 77 1 1 1 5 5 88 88 111 1 5 5 5 1 5 88 5 5 5 5 1 1 5 5 5 5 1 5 5 88 66 1 88 5 999999 1 111 000 55555555555555555555 3 666 2 2222 1 00 7 33333 333 000 5 22 1
lowQualScore : . . . .. . .. . ... . . ... . .. .. .... ... . .... . .. . . .. ... . . ... . .. . . . .... .. . . . . . .. . . . . . . . ..... . . .. .......... . . .. . .. .... . . . ....... . ... . . . . .. ..... ......... . .. . . . . . . ...... ...... . .. .. ... . . .. . . . ......... . .. . . ....... . .......... ... .. .. . . . ............ . . . . .. .. . ....... . .. . .... . . . . . .. . ... . .. . . .. ..... .... . ......... ... ..... . . .. . ............. . ....... ......... . . ... ... . . .. . ..... . ........ . .... . . . . .... . . . .. . . . . . .. .. ... . . . . . . .. . . . . . . . . . . . . . .. .. . .. . ...... . ... ... .................... . ... . .... . .. . ..... ... ... . .. .
lowQualScore : 4 9 3 33 7 44 5 000 7 7 333 1 22 22 5555 444 1 6666 7 99 3 3 22 222 3 6 000 6 00 6 6 4 7777 22 3 6 6 6 0 00 3 3 3 3 3 3 3 33333 3 3 66 6666666666 3 3 66 3 66 7777 6 6 6 8888888 0 000 9 6 6 0 55 66666 888888888 4 11 1 4 9 4 4 4 444444 222222 0 00 00 000 0 0 00 8 8 0 444444444 0 00 0 6 4444444 8 2222222222 000 00 00 0 0 8 000000000000 0 0 2 0 88 88 5 0000000 7 88 0 5555 5 0 0 0 0 55 0 000 2 55 0 0 88 33333 0000 5 000000000 000 33333 2 0 55 2 0000000000000 4 6666666 888888888 3 7 888 777 7 7 99 7 77777 7 44444444 7 3333 3 3 3 3 3333 7 0 5 55 0 0 0 5 5 00 55 000 0 0 0 0 0 0 55 5 5 0 0 0 0 0 0 5 5 0 5 0 00 55 0 00 5 555555 0 555 555 33333333333333333333 3 777 0 3333 0 77 3 00000 333 555 5 00 0
consensus : ATATAAATTGGCGAAG-TAAACAAT--GTG-TT--AAA-CGTAATCA---T-AGT-C---CA-AA--AA--A-C--AT---A-TA----CAAAA-TCGA--GT-G-T--AG---G-GCA-A---CACGGACC-T--CC-GA-CGA----AAGCGAAAGGCAGG-A-TC-AG-GTGCC--ATG-GAGG-AGT-A-A-G-CA-TCCTC-----TG-CTG-A--C-C----G---T-CAC-AC--CC-GCCGTG--AGCCC----TTAGT-CG-AA-A---T---AA-AGTAAAC---GGGGT-TACC-CGTNG--TCAAA-----TCT---------A-GTA--GGAA-A-A-T-G-ACA-----CTAACAACA----GGGTATGAAACA-AA--TC--AGTC---AAC-ATAT-GACTTA--GTGATAATT-TG-------CAAT-C--G-CAAACAAGGTC-----GTTATAGCGACCGT--AG------AATTTG---CGAAAT--GAT--GACTTTAAA-CGANATTCGT-TATA--ACC-CTGC-AACATCAAC-TTTTNG--TTAGTAGTTGGCC----CTTCGCTTTAAAAAGTCCTCAT--ACGC-AT-G-CATGCTCTT-GC-GTATCG-AA-TCAACTGGGAGACATTACACACCATAAG-CAGGTG---ATAGTGGG-TACATTNCTA-CAT--AGAAA-----AGGAAAGTTGACGTATTGCATTGGTCCGAGAGTCAAAGTCCANTCACGCTT-----ATCATATA-AATG-TAGTTGTCA-------------GACTGCC-G-----TTAGA------AAGTCAATATTAAG-TAAAAT---ATCC---AAATA-TGA-AGCAGATAT--GTCAG-AT-T--CTGT-GGTGTCCTTTA----TA--TCGAGT----TCTTCGGGATATATCAAAATGGA-AT-G-TTATGAAAATTNTGATTGTTAATTGATAACACATCATCTAATATAGCCCNATANGNAAGGTTGAAGGTACACCTGGCAAAGTTTCATTTTGNTTTCATCCCGTAAGCAGTTCCTCGNAGCAAATTTTCTGCTTCTGTATGATATATAAAAATAAGGTCTGCCAGTNANGGGGCACAATTAGTGCCCATAGTGAATAACCNACGAGATTGTTGGGAAAGACNATNGTCTGTCACAAAGACCACAGGATATTAGANATATTTATCTATGTGAGGAACCCAAGCATGCTCTTAATA--TTT--CATCT--A----CT-TCA-G-AGTACTTGT-TG-GNTGGCAATCAG-AAGTGTTTTTCTAACAAAATATGTTG-TCTTG---TTTCCCGCAGACGACCAGAATATTNNTATTTTCGGNTG
Reference ( family-235 ) : ATATAAATTGGCGAAG-TAAACAAT--GTG-TT--AAA-CGTAATCA---T-AGT-C---CA-AA--AA--A-C--AT---A-TA----CAAAA-TCGA--GT-G-T--AG---G-GCA-A---CACGGACC-T--CC-GA-CGA----AAGCGAAAGGCAGG-A-TC-AG-GTGCC--ATG-GAGG-AGT-A-A-G-CA-TCCTC-----TG-CTG-A--C-C----G---T-CAC-AC--CC-GCCGTG--AGCCC----TTAGT-CG-AA-A---T---AA-AGTAAAC---GGGGT-TACC-CGTNG--TCAAA-----TCT---------A-GTA--GGAA-A-A-T-G-ACA-----CTAACAACA----GGGTATGAAACA-AA--TC--AGTC---AAC-ATAT-GACTTA--GTGATAATT-TG-------CAAT-C--G-CAAACAAGGTC-----GTTATAGCGACCGT--AG------AATTTG---CGAAAT--GAT--GACTTTAAA-CGANATTCGT-TATA--ACC-CTGC-AACATCAAC-TTTTNG--TTAGTAGTTGGCC----CTTCGCTTTAAAAAGTCCTCAT--ACGC-AT-G-CATGCTCTT-GC-GTATCG-AA-TCAACTGGGAGACATTACACACCATAAG-CAGGTG---ATAGTGGG-TACATTNCTA-CAT--AGAAA-----AGGAAAGTTGACGTATTGCATTGGTCCGAGAGTCAAAGTCCANTCACGCTT-----ATCATATA-AATG-TAGTTGTCA-------------GACTGCC-G-----TTAGA------AAGTCAATATTAAG-TAAAAT---ATCC---AAATA-TGA-AGCAGATAT--GTCAG-AT-T--CTGT-GGTGTCCTTTA----TA--TCGAGT----TCTTCGGGATATATCAAAATGGA-AT-G-TTATGAAAATTNTGATTGTTAATTGATAACACATCATCTAATATAGCCCNATANGNAAGGTTGAAGGTACACCTGGCAAAGTTTCATTTTGNTTTCATCCCGTAAGCAGTTCCTCGNAGCAAATTTTCTGCTTCTGTATGATATATAAAAATAAGGTCTGCCAGTNANGGGGCACAATTAGTGCCCATAGTGAATAACCNACGAGATTGTTGGGAAAGACNATNGTCTGTCACAAAGACCACAGGATATTAGANATATTTATCTATGTGAGGAACCCAAGCATGCTCTTAATA--TTT--CATCT--A----CT-TCA-G-AGTACTTGT-TG-GNTGGCAATCAG-AAGTGTTTTTCTAACAAAATATGTTG-TCTTG---TTTCCCGCAGACGACCAGAATATTNNTATTTTCGGNTG
gi|1 : TGTAAAT-GGCGAAG-TAA-CAAGAGGTA-TC--AAA-CGTACTCA---T-AG--C---CA-AA--AA--A-C--AT-----------CACAA-TCGA--GT-GGT--AG---G-GCA-A---CACGGACCGT--CT-GA-CGA----AA-CGAAGCACAGGAA-TC-AG-GTG-C--A-G-GA-G-AGT-A-A-GCCA-TCC-A-----TG-CTG-A--CGC----GGGTT-CAC-AC--CCAGCCGTG--AGCTCTG--TTCGT-CG-GA-A---TTACAA-AGTAAAC---GAG---TACC-CGTCGCTTCGAAGATCCTCT---------A-GTATCGCAA-A-ACT-G-ACAGTGCTCCGACAACATATCGGGTAGGGAACACAAACTCCAAGCTACAAACGATATCCATTTAACGTG-TAATTCTGCCTAAAACAGC-C--GCCAAACCCGGTCCATTGATTA-GGCGACCGTTCAACGCTTTAATTTGTATCGTACTCGGATTCGA-TTTAAA-CGAGATGTGTGTATACCACC-CGGCAAACATC-AC-TTTTGGATTTA-TAGTTGCCCCTCTCTTTGCTTTAAAAA-TCATCATGAACGCGAT-G--AT-CCCTTGGC-GTATCGCAATTCAACTGAGAGACATTACACAC--TAAGCCAGTTGGATATGGTGAGTTACACTTCTAGCATGCAGAAGCTAACAGGAAAG-TGACATATTGCATTGGTCCGAGAGTCAAAGTTCATTCACGTTTTTACCATCAT-TATGATGTTAGTTCTCATTGTTTTTTTCCTGACTGTG-GCTTATTTAGAGGACTCAAGTCGATTTTAAG-TAAAATTG-CTTCGATAGATATTGATAGCA-CTAT--CTTGG-G-----GTGC-GGTGTCCTTTG----T
gi|1 : ttttattgtgaagtttttaaaaatttttctctaaatTCTAATATAGCCCTATAAAGAAAGT-GAAGGTACATCTGGCAAAGTTTCATTTTGATTTCATCC-GTAAGCAGTTCCTCGAAGCAAATTTTCTGCTTC-GTATGATATATAAAAATAAGGTCTGC-AGTTATGGG-CACAATTAGTGCC-ATAGTGAATAACCAACAAGATT-TTGGGAAAGACAATTGTCTGTCACAAAGACTACAGGATATTAGAGATATTTATCTAT---AAGAACCCAAGCATGCTCTTAATATGTTT--CATTT--AATCCCT-TCA-G-AGTA-TTGTGTG-GGTTGCAATAAC-AAGTGGTTCTCTGACAAAATATGTTATTCTTG---TTTTCCGCAGATGACCAGAATATTGTTATTTTCGGTTGggtgttgcccttttaagagagagagatccaacacatggtactgtatagactgctacgtaataatattgaaacttgaattatgtacagcttgaatactacgcaccagcgtatgggagtctaatatagccctataaagaaagtgaaggtacatctggcaaagtttcattttgatttcatccgtaagcagttcctcgaagcaaattttctgcttcgtatgatatataaaaataaggtctgcagttatgggcacaattagtgccatagtgaataaccaacaagattttgggaaagacaattgtctgtcacaaagactacaggatattagagatatttatctataagaacccaagcatgctcttaatatgtttcatttaatcccttcagagtattgtgtgggttgcaataacaagtggttctctgacaaaatatgttattcttgttttccgcagatgaccagaatattgttattttcggttgccttttggttcaactaaaggcaattatcaattatctgaataagtcctagattttgtaatttatttatcgaggaggaattttgtatatattgacagttgttcggatgaaatcaagtatggttttgatggcaatcaacattttagaaaaaatgtcgagacttgaagttatgtctaaagtctttagagttttgtgaagaatccaacaatctgattgtacaacccaacttctggaaattaattgtagttggaatgagtgcat
gi|10 : ttttattgtgaagtttttaaaaatttttctctaaattgtaaatggcgaagtaacaagaggtatcaaacgtactcatagccaaaaaacatcacaatcgagtggtagggcaacacggaccgtctgacgaaacgaagcacaggaatcaggtgcaggagagtaagccatccatgctgacgcgggttcacacccagccgtgagctctgttcgtcggaattacaaagtaaacgagtacccgtcgcttcgaagatcctctagtatcgcaaaactgacagtgctccgacaacatatcgggtagggaacacaaactccaagctacaaacgatatccatttaacgtgtaattctgcctaaaacagccgccaaacccggtccattgattaggcgaccgttcaacgctttaatttgtatcgtactcggattcgatttaaacgagatgtgtgtataccacccggcaaacatcacttttggatttatagttgcccctctctttgctttaaaaatcatcatgaacgcgatgatcccttggcgtatcgcaattcaactgagagacattacacactaagccagttggatatggtgagttacacttctagcatgcagaagctaacaggaaagtgacatattgcattggtccgagagtcaaagttcattcacgtttttaccatcattatgatgttagttctcattgtttttttcctgactgtggcttatttagaggactcaagtcgattttaagtaaaattgcttcgatagatattgatagcactatcttggggtgcggtgtcctttgtggtgttgcccttttaagagagagagatccaacacatggtactgtatagactgctacgtaataatattgaaacttgaattatgtacagcttgaatactacgcaccagcgtatgggagATATAAATTGGCGAAG-TAAACAAT--GTA-TT--AAA-CGTAATCA---T-AGTCC---CA-AA--AA--A-CATAT---A-TA----CAAAA-TCGA--GT-G-T--AG---G-GCA-A---CACGGACC-T--TC-GA-C-A----AAGCGAAA-GCAGG-A-TC-GG-GTGCA--ATG-GAGG-AGT-A-A-G-CA-TCCTC-----TG-CTG-A--C-TG---G---T-CAC-AC--CC-GCCGTG--AGCCC----GTAGT-CA-AA-A---T---AA-AGTAAAC---AGGGT-TACC-CGTccttttggttcaactaaaggcaattatcaattatctgaataagtcctagattttgtaatttatttatcgaggaggaattttgtatatattgacagttgttcggatgaaatcaagtatggttttgatggcaatcaacattttagaaaaaatgtcgagacttgaagttatgtctaaagtctttagagttttgtgaagaatccaacaatctgattgtacaacccaacttctggaaattaattgtagttggaatgagtgcat
gi|11 : gattattttcattg--AAA-CGTAATCA---TCAGC-CAT-TA-TA--AA--A-C--AC---ATTA----CAAAATTCGGC-GTCG-T--AGT--GTGCATAGACCACGGACC-T---C-GA-TCACACTAAGC-CAAGGCGAG-A-TC-AGTCCGCCATATG-GAGA-TGT-ACA-G-CA-TTCTCCTTCTTG-CTGTA--CGCTGGGG---T-CACAACGACC-GCCGTA--ATCCCCCTTTTAGTCCG-AA-A---
gi|12 : taacaatcaagtaccaAAGGCAGGAA-TC-A--GTGTC--ATGCGTAG-AGT-A-ATA-CAGTCCTC-----TGTCTG-AATC-G----G---TCCAC-AT--CC-AGCGTGAAAG-CC----TTAGT-TG-AACACATT---AATAGTAAACGGTGGAGTATACCGCGTCG--TCACA-----TGTATATTTAAGA-GTA--GGAA-ATA-TCG-AC------CTAAAAAata
gi|13 : ATATAAATTGGTGAAG-TAAACAAT--ATG-TT--AAA-C-TAA
gi|14 : tacGTTGTCA-------------GTCTGCC-A-----TTAGA--------GTCAATAAAATG-TAAAGT---ATCC---AAATA-TGA-AGCAGATCT--GTCAG-AT-T--CTGT-GGTGTCCTTTATTATTA--TTGA-TAAAATCTTCAAAA-ATATGAAA----A-AT-G--TATGAAAatgcatggatatgaagtccacggaatcccaaaatacgcaacacagttaaggtgatcaacaacacatttccaataaaataaagcaagaaaaacatgccat
gi|15 : CAT--ACGC-AT-ATCATGCTCTT-GT-GTATCG-AA-ttactagaa
gi|15 : ACACATCATAA--CAGGTG---ATAGTGG--CATATTGCTA-CTT--AGAAA-----AGGA---TTGAgtnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncacacatcataacaggtgatagtggcatattgctacttagaaaaggattgat
gi|16 : catacgcatatcatgctcttgtgtatcgaagtnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncT-----GTTATATA-AATG-TAGTTATCA-------------GAATACCAA-----ATAGA------AAGTCAACATTAAGTTAAAATAACACCA---AAATA-AGA-AGCAAATATCGGTAAGTATATAGTTGTAGGTGTTCTTAG----TAATTCGAt
gi|18 : ATATAAATTGGCGAAG-AAAACAAT--GAA-TT--AAA-TGCAATCA---T-AGT-C---CC-AA--AACCA-T--AT---A-TA----CAAAT-TCGA--GC-A-T--AG---a
gi|19 : aatggctatatgaaattccattgtATA--TTTTACATCTTGA----CTATCACG-AGTATTTGT-TGCGCTGGCCATCAGTAAGTGTTTTTCTAAC-AAATATG-TG--CTTGCAATTTCC
gi|2 : ctcgattGCGAAG-TTAACATT--GTG-TC--AAA-CGTAATCA---T-AAT-C---CA-AA--AA--A-C--AT---A-TA----CAAAA-TCGA--GT-G-T--AG---G-GCA-A---CACGGACC-T--CC-GA-CAA----AAGCGAAAGGTAGG-A-TC-AG-GTGCC--ATG-GAGG-AGT-A-A-G-CA-TCTTC-----TG-CTG-A--C-C----G---T-CAC-AC--CC-GCC-TG--AGCCC----TTAGT-CG-AA-A---T---AA-AGTAAAC---GGAAT-TACC-CGTAG--TCAAA-----TCT---------A-GTA--GGAA-A-A-T-G-ACA-----CTAACAAAA----GGGTATGAAACA-AA--TC--AGTC---AAC-ATAT-GACTTA--GTGATAATT-TG-------ATAT-C--G-CAAACAAGGTC-----ATTATAGCGACCAT--AG------AATTTG---CGAAAT--GAT--GACTTTAAA-CGATATTCGT-TATA--ACC-CTGC-AGCATCAACTTTTTTG--TTAGTAGTTGGCC------TCGCTTTAAAAAGTCCGCAT--ACGC-ATAG-CATGCTCTT-GCGGTATCG-AA-TCAACTGGGAGATATTACACACCATAAG-CAGGCG---ATAGTGGG-TATATTACTA-CAT--AGAAA-----AGGAAAGTTGATG-ATTGC---------AAAGTTAAAGTC--ATCACGCTT-----ATCATATA-AATA-TAGTTGTCA-------------GTCTGCC-A-----TTAG--------AGTCAATGTTAAG-TAAAAT---ATCC---AAATA-TGA-AGCAGATAT--GTCAG-AT-T--CTAT-GGTGTCCTTTA----TA--TCGAGT----TCTTCGGGATATATCAAAATGGA-ATAA-TTATGAAAATTATGATTGTTAATTGATAACACATCATCT-ATATA--CCAATATGTAAGGTTGAAGG-ACAC--GGC--AGTT---TTTTGTTTTTATCCCGTAA-CAGTTTCT-GTA-CAAA--TTCTGCTTCTATATGA-ATATAAAAATAA-GTCTGCCAATAAGGGGGCACAATTAGTGCCCATAG-GAAT-ACCTACG-GATTGTTGG--AAGACC-TGGTC--TC-CAAAGACCACA------TAAATATAT---TCTATGTGAGAAACTCAAGCATGCTTTTAAT---------ATCT--A----CT-TCA-GAAGTACTTGT----GTGGACAATCAG--AGTGTTTTTCTAACAAAATATGTAG-TCTTG---TTTCCC---AACGACTAGAA-ATTCGTATTTTCGGGTG
gi|20 : atacaaaaaTAAATGAGCGAAGCTAAACAAT--GTGTTT--AAA-CGTAATCAAGTT-AAC-C---AA-AA--AA--A-T--AT---A-TA----C
gi|21 : atagtgaatttcaatTAT--GTCAG-AT-T--CTGT-GGTGTCCTTTA----T
gi|22 : ATATAAATTGGCGAAG-TTACCATT--GCA-TT--AAA-CGCAACCA---T-TAT-C---Ctacataatagccttctatattacgagtatgaaat
gi|23 : tcggtcttccaaG-GAGG-AGT-A-A-T-CA-TTATC-----TG-CCG-A--T-T----GC--T-CAC-AC--TT-GTCGTG--GGTC
gi|24 : ATATACATTGGTTGAG-TAAACAAT--GTG-TT--AAA-CATAATCA---T-AGT-C---tacgtcaa
gi|26 : actttcaATACAAATTGGCGAAG-TAAACAAT--GTA-TT--AAA-CGT
gi|27 : tacaT-CACC-CGTAG--TCAAA-----TGT---------A-GTA--GGGA-A-A-T-G-ACA-----TTA
gi|28 : TCAATGTTGAG-TAAAAT---ATCC---ACATA-TGA-AGTAGA
gi|29 : A-AGCAGATCT--GTCAG-AT-T--CTAT-GGTGTCCT
gi|3 : ATATAACTTGGCGAAG-TAAACAAT--GTG-TT--AAT-CGTAATGA---T-AGT-C---CC-AG--AA--A-C--AT---A-TA----CAAAG-TCGA--GT-G-T--AA---A-GCA-A---CACGGACC-T--CC-GA-TAA----AAGCGAA-GGCAGG-A-TC-AG-ATGCC--ATG-GAGA-AGT-A-A-G-CT-TCCTC-----TG-CTG-A--C-A----GG--T-CAC-AC--CC-ATCGTG--ACGGC----TTAGT-CG-AA-A---C---AA-AGTAAAC---GGGGT-TACC-CGTTG--TCAAT-----TCT---------A-GTA--CGAG-A-A-A-A-ACAAT---CTAACAA-A----GGGTATAAAACA-AC--TC--AGTC---AAC-ATAT-GACTTA--GTGATAATT-TG-------TAAT-C--G-CAAACCAGATT-----TTTATAGCGACCGT--AG------AATTTG---CGAAAT--GAT--GA-----------------------------CTGC-AACATCAACATTTTAG--TTAGTAGTTGG------CTTCGCTTTAAAAAGTCCTCAT--ACGC-AT-GACATGCTCTT-GC-GTATCT-AA-TCAACTGGGAGACA-TACACACCATAAG-CAGGTG---ATAGT-GG-TACATTTCTG-CAT--AAA
gi|3 : atctcctcaataaattcgaagaaaatgtttaaggattaaggatatttagatacATA-AAT--T-GTTGTAA-------------GACTGCC-G-----TTAGA--------GTCAATATCAGG-TAAAAT---ATCC---AAATA-TGA-AGCAGATAT--TTCAG-AA-T--CTGT-GGTGTCCTCTA----TT--TCGAGT----TCGTCGGGATATATC-ATATGGACAT-GCTTAT-AAAATTCTGATTGTttgttgtaagactgccgttagagtcaatatcaggtaaaatatccaaatatgaagcagatatttcagaatctgtggtgtcctctatttcgagttcgtcgggatatatcatatggacatgcttataaaattctgattgtcgtaaaattatttgacaaga
gi|4 : atctcctcaataaattcgaagaaaatgtttaaggattaaggatatttagatacatataacttggcgaagtaaacaatgtgttaatcgtaatgatagtcccagaaacatatacaaagtcgagtgtaaagcaacacggacctccgataaaagcgaaggcaggatcagatgccatggagaagtaagcttcctctgctgacaggtcacacccatcgtgacggcttagtcgaaacaaagtaaacggggttacccgttgtcaattctagtacgagaaaaacaatctaacaaagggtataaaacaactcagtcaacatatgacttagtgataatttgtaatcgcaaaccagatttttatagcgaccgtagaatttgcgaaatgatgactgcaacatcaacattttagttagtagttggcttcgctttaaaaagtcctcatacgcatgacatgctcttgcgtatctaatcaactgggagacatacacaccataagcaggtgatagtggtacatttctgcATACAAAAAGGCGAAG-TTAACATT--GTG-TC--AAA-CGTAATCA---T-AAT-C---CA-AA--AA--A-C--AT---A-TA----CAAAA-TCGA--GT-G-T--AG---G-GCA-A---CACGGACC-T--CC-GA-CGA----AAGTG-AAGGCAGG-A-AC-AG-GTGCC--ATG-GAGG-AAT-A-A-G-CA-TCCTC-----TG-CTG-A--C-CG---G---T-CAC-AC--CC-GCCGTG--AACCT----GTAGT-CG-AA-A---T---AA-AGTAAAC---GAGAT-TACC-CGTAG--TTAAA-----TCT---------A-GTA--G--A-A-A-T-A-ACACGT--CTAACAA-A----GGGTATAGAACA-AA--TC--AGTC---AAC-ATAT-GACTTA--GTGATAATT-TG-------TAAT-C--G-CAAACAAGGTC-----A-TATAGCGACCGT--AG------AATTTG---TGAAAT--GAT--GACTTTAAA-CGAGATTCGT-cgtaaaattatttgacaaga
gi|5 : tgtttccattttttgtttacctgaggttttgttagatcgagtaaactatttttgaagtttctgttcaagaaatgcttattaagtgtgttaactaatatgg-AGT-T---CA-AG--AG--A-G--ATTGAA-TG-----AAAA-TGGA--AT-G-C--AGTTAG-ACA-AA--CACAGACC-C--CT-GG-ATA----TATC-AGAGGTGGG-A-TC-AG-GTGTC---T---AGG-AGTTA-A-G-CG-TCTCC-----TG-TCA-A--T-C----G---G--AC-AC--T--ATTGT-------C----TTTTT-C--------------A-GGTAAAC---GGAGT-TAAC-CGTTG--TCAAAA----TCA---------ACGTA--TAAAGA-A-C-G-GC------CTAACAAC-----TGCTATGAAACA-CA--TC--GGAC---AGC-ATTT-AACCCA--ATGGCAG----G-------CCATGCTGG-CAAACAAAATC-----GTTATAACGA-CAT--AT------AATTTG---CGAAAT--GTT--GACTTTAAAGTGACA---GT-TGAA--ACCTCTGC-AACATCAAC-TTT--G--TCAGT
gi|6 : aaacataaaattatcatatctcttttcgATAGAAAATGGCGAAG-TTAACAAAA-GTA-ATCAAAA-CGTAATCA---T-AGT-C---CA-AA--AA--AAC--AC---A-TT----CAATA-T-GA--GT-G-TTTAG---G-GCA-A---CACGGACC-T--TC-GA-CGA----AAGCG-AAGGCAGG-ATTC-AG-GTG-C--ATG-GAGGAAGT-A-A-G-GC-TCCTC-----TG-CTG-A--C-CG---G---T-CAC-A---CC-GCCGTG--AGCCC----TTAGT-CGAAA-A---TAA-AA-AG-AAAC---GGGAT-TACC-CGTGG--TCAAA-----TCT---------A-GTA--GGTA-A-A-T-G-A
gi|7 : tttgaatcgaggcaagctacttacagacaagttgttgttggcagggggtttcttaaACATC--GTG-TT--AAAACATAAT-A---T-AAT-TACTCA-AA--AA--A----AT---A-TAA---CAAAACTCGAAAGA-G-TTGAG---G-GCA-A---CACGGATC-CAACCAGACCAA----AAGCGAAgcaattttcgcatatttcgagcaaaggtaaacacaagta
gi|8 : agagtaagatctacagcatcaagtcttgaacgttgtagggttaccattgagtttataatggtctttcatacgataaaccgatgtcccgtgtcaacagcagagtcgcatcgaataaagattcctccctgccaattagtgccctgagtggccgagttaatttgcagcacaatcactcttcgcaatgtacgtcttcctatacaaatacttagaggcccgaaagttccATATAAAT-GGCGAAG-TAAACAAT--GTG-AC--AAT-TGTAATCA---T-AGT-C---CCCAA--AA--A-C--AT---A-AA----CAAAA-TCGA--GT-G-T--AG---G-GCA-A---CACGGACC-T--CC-GA-CAA----AAGCG-AAGGCAGG-A-TC-AG-GTCCC--ATG-AAGG-AGT-A-A-A-CA-TTCTC-----TG-CTG-A--T-CG---G---C-CAC-AC--CC-GCCGTA--AGCCC----GTAGT-CG-AA-T---T---AA-AGTAAAC---G-----------GTTG--TTAAA-----TCA---------A-CTG--AGAG-ACA-T-ATACA-----CCATAAGCA----GG
gi|8 : gtaaattgccactgaatttctcaaacattaaagatctttgaataataagtatactttataag-AA-TCAACTGAGAGACAT-ATACACCATAAG-CAGGTG---ATAGTAGtgatagtagtctg
gi|9 : gtaaattgccactgaatttctcaaacattaaagatctttgaataataagtatactttataagatataaatggcgaagtaaacaatgtgacaattgtaatcatagtccccaaaaacataaacaaaatcgagtgtagggcaacacggacctccgacaaaagcgaaggcaggatcaggtcccatgaaggagtaaacattctctgctgatcggccacacccgccgtaagcccgtagtcgaattaaagtaaacggttgttaAATTAGCGAAG-TTAACATT--GTA-TT--AAA-CGTAATCA---T-AAT-C---CT-AAGCAA--A-C--AT---A-TATACACAAAG-TCAA--AT-G-T--AG---GCGAA-A---CACGGACC-T--CC-GA-CAA----AAGC-AAAGGCAGG-T-TTTAG-GTGC---ATG-GAGG-AGT-C-A-G-CA-TC-TC-----TG-CTG-A--C-C--------T-CAC-AT--CC-GCCGTG--AGCCG----TTAGT-CG-AA-A---T---AA-AGTAAAC---GGGAT-TACC-TGTAG--TCAAtctg
blockSeqs : T C A T CA A AGT C C ACT C GC CC CAT TGA T TACA T AA C . TT TTA T T GAC . AA A C C CACT GA A T T T C AT C A T C T . G CTTCT T T AT GCTGGGG C A GA . AA CCTT C A C CATT T GGT G A G C . A ATATTTAAG C . G T . C T ACGT AA . . . . . . . A . AT G TG . AT AG . . . C G T TTCGTTATA T . A T TT . G CC G . . ATC G . G . . TT . . G G G . . . AAGT . . A . A . G A . T AA AAA T AAC . . . CG T TATAG A TAAT G . T A A C AAT G C . . A T T T . . . . T C . . T . . T . . C A G G C . . T . G . C G . . . T . GTG ATTTTACATCTTGA A CG T TGC C TA A TAGT CAA . . CG G
blockSeqs : T . . . . . . . . AT . . . AC . . A C C . . TG T C . A . . . . A . GA . . . . C . . . . . . . . . . . . TGG . . . . . . . . . TAA . . G . . A . . . . . . C . . . AAT CA . . . . . . . A . TA . . . TT AG . . . C . G GTTGAA . . A A TA . G C G . . AGC G . . . . T . . G G A . . . T . A . A A . A A A . . . . . . . TT . TA G . T . A . GCT . ATCTA . GA C . T . . TG .
blockSeqs : T . . . . . . . . . . . . C . . . . . . . . . . . . . . . . A . GA . . . . T . . . . . . . . . . . . TGC . . . . . . . . . T . . A . . A . . . . . . . . . . A A . . . . . . . A . TA . . . GT AG . . . C . C . . . A . . . G . . GAC G . . . . T . . A . T . . A . . . . T A A . . . . . . . TT . TT
blockSeqs : G . . . . . . . . . . . . T . . . . . . . . . . . . . . . . G . GA . . . . C . . . . . . . . . . . . AGG . . . . . . . . . T . . G . . T . . . . . . . . . . A A . . . . . . . G . CC . . . A AT . . . . . . . . . . . . A G A . . . . . . . TT .
blockSeqs : T . . . . . . . . . . . . C . . . . . . . . . . . . . . . . T . C . . . . C . . . . . . . . . . . . CGG . . . . . . . . . C . . A . . A . . . . . . . . . . A C . . . . . . . TT .
blockSeqs : T . . . . . . . . . . . . T . . . . . . . . . . . . . . . . G . G . . . . C . . . . . . . . . . . . CGG . . . . . . . . . T . . G . . T . . . . . . . . . . . . . . AT .
blockSeqs : T . . . . . . . . . . . . C . . . . . . . . . . . . . . . . A . A . . . . T . . . . . . . . . . . . CGG . . . . . . . . . T . . A . . G . . . . . . . . . . .
blockSeqs : T . . . . . . . . . . . . C . . . . . . . . . . . . . . . . A . G . . . . C . . . . . . . . . . . . GG . . . . . . . . . T . . A . . T . . . . . . . . . .
blockSeqs : A . . . . . . . . . . . . G . . . . . . . . . . . . . . . . A . G . . . . C . . . . . . . . . . . . CG . . . . . . . . . . . . . . . A .
blockSeqs : T . . . . . . . . . . . . C . . . . . . . . . . . . . . . . . . A . . . . . . . . . . . . . . . . . CG . . . . . . . . . . .
blockSeqs : T . . . . . . . . . . . . C . . . . . . . . . . . . . . . . . . . . C . . . . .
blockSeqs : . . . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . .
blockSeqs : . . . . . . .
blockSeqs : . .
blockSeqCons : ** G* CGG******* **** T****** ** ***** ** A***** A***** ** ** *** ** TN******* NT***** AG******** *** ** ** *** ************* A****** A******** *** *** TT***
originalCons : ATATAAATTGGCGAAG-TAAACAAT--GTG-TT--AAA-CGTAATCA---T-AGT-C---CA-AA--AA--A-C--AT---A-TA----CAAAA-TCGA--GT-G-T--AG---G-GCA-A---CACGGACC-T--CC-GA-CGA----AAGCGAAAGGCAGG-A-TC-AG-GTGCC--ATG-GAGG-AGT-A-A-G-CA-TCCTC-----TG-CTG-A--C-C----G---T-CAC-AC--CC-GCCGTG--AGCCC----TTAGT-CG-AA-A---T---AA-AGTAAAC---GGGGT-TACC-CGTNG--TCAAA-----TCT---------A-GTA--GGAA-A-A-T-G-ACA-----CTAACAACA----GGGTATGAAACA-AA--TC--AGTC---AAC-ATAT-GACTTA--GTGATAATT-TG-------CAAT-C--G-CAAACAAGGTC-----GTTATAGCGACCGT--AG------AATTTG---CGAAAT--GAT--GACTTTAAA-CGANATTCGT-TATA--ACC-CTGC-AACATCAAC-TTTTNG--TTAGTAGTTGGCC----CTTCGCTTTAAAAAGTCCTCAT--ACGC-AT-G-CATGCTCTT-GC-GTATCG-AA-TCAACTGGGAGACATTACACACCATAAG-CAGGTG---ATAGTGGG-TACATTNCTA-CAT--AGAAA-----AGGAAAGTTGACGTATTGCATTGGTCCGAGAGTCAAAGTCCANTCACGCTT-----ATCATATA-AATG-TAGTTGTCA-------------GACTGCC-G-----TTAGA------AAGTCAATATTAAG-TAAAAT---ATCC---AAATA-TGA-AGCAGATAT--GTCAG-AT-T--CTGT-GGTGTCCTTTA----TA--TCGAGT----TCTTCGGGATATATCAAAATGGA-AT-G-TTATGAAAATTNTGATTGTTAATTGATAACACATCATCTAATATAGCCCNATANGNAAGGTTGAAGGTACACCTGGCAAAGTTTCATTTTGNTTTCATCCCGTAAGCAGTTCCTCGNAGCAAATTTTCTGCTTCTGTATGATATATAAAAATAAGGTCTGCCAGTNANGGGGCACAATTAGTGCCCATAGTGAATAACCNACGAGATTGTTGGGAAAGACNATNGTCTGTCACAAAGACCACAGGATATTAGANATATTTATCTATGTGAGGAACCCAAGCATGCTCTTAATA--TTT--CATCT--A----CT-TCA-G-AGTACTTGT-TG-GNTGGCAATCAG-AAGTGTTTTTCTAACAAAATATGTTG-TCTTG---TTTCCCGCAGACGACCAGAATATTNNTATTTTCGGNTG
finalCons : ATATAAATTGGCGAAG-TAAACAAT--GTG-TT--AAA-CGTAATCA---T-AGT-C---CA-AA--AA--A-C--AT---A-TA----CAAAA-TCGA--GT-G-T--AG---G-GCA-A---CACGGACC-T--CC-GA-CGA----AAGCG-AAGGCAGG-A-TC-AG-GTGCC--ATG-GAGG-AGT-A-A-G-CA-TCCTC-----TG-CTG-A--CCGG-------T-CAC-AC--CC-GCCGTG--AGCCC----TTAGT-CG-AA-AT------AA-AGTAAAC---GGGGT-TACC-CGTNG--TCAAA-----TCT---------A-GTA--GGAA-A-A-T-G-ACA-----CTAACAAA-----GGGTATGAAACA-AA--TC--AGTC---AAC-ATAT-GACTTA--GTGATAATT-TGTN-------AT-C--G-CAAACAAGGTCNT-----TATAGCGACCGTAG--------AATTTG---CGAAAT--GAT--GACTTTAAA-CGANATTCGT-TATA--ACC-CTGC-AACATCAAC-TTTTNG--TTAGTAGTTGGCC----CTTCGCTTTAAAAAGTCCTCAT--ACGC-AT-G-CATGCTCTT-GC-GTATCG-AA-TCAACTGGGAGACATTACACACCATAAG-CAGGTG---ATAGTGGG-TACATTNCTA-CAT--AGAAA-----AGGAAAGTTGACGTATTGCATTGGTCCGAGAGTCAAAGTCCANTCACGCTT-----ATCATATA-AATG-TAGTTGTCA-------------GACTGCCA------TTAGA--------GTCAATATTAAG-TAAAAT---ATCC---AAATA-TGA-AGCAGATAT--GTCAG-ATT---CTGT-GGTGTCCTTTA----TA--TCGAGT----TCTTCGGGATATATCAAAATGGA-AT-G-TTATGAAAATTNTGATTGTTAATTGATAACACATCATCTAATATAGCCCNATANGNAAGGTTGAAGGTACACCTGGCAAAGTTTCATTTTGNTTTCATCCCGTAAGCAGTTCCTCGNAGCAAATTTTCTGCTTCTGTATGATATATAAAAATAAGGTCTGCCAGTNANGGGGCACAATTAGTGCCCATAGTGAATAACCNACGAGATTGTTGGGAAAGACNATNGTCTGTCACAAAGACCACAGGATATTAGANATATTTATCTATGTGAGGAACCCAAGCATGCTCTTAATA--TTT--CATCT--A----CT-TCA-G-AGTACTTGT-TG-GNTGGCAATCAG-AAGTGTTTTTCTAACAAAATATGTTG-TCTTG---TTTCCCGCAGACGACCAGAATATTNNTATTTTCGGNTG
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|17 ): AAGATGTATCGTATTTTCAAACTAGTAAGAAAGTGTATAGCTTCTGGGCTTTAGAACGTTCGAGACAAGCAGTCCACCAACAGAGGTGTTGAACCGTGATCTAATGCA
Unaligned ( gi|25 ): TGTAGGTATGCTTCATGCATCTTTCAACAAAAGAACAGAAAA
Alignments
lowQualScore : 1111 111 1111 1111111 11111 222222222 3333 11111 11 11 11 111 11 2222222222 2222222 2222222222 111 11 11 1 222222222222 1 1 1 222222 4444444 11 1 2222 1 1 111 11 1 11 33333 1111 1 333333333 111 33333 1 11 4444444444444 1111 111 44444444 222 111 11111111 2222 1 2222 1 11 1 1 11 11 222 1 1 1 1 11 1 1 1 1 1 1 1 1 1 1 11 11 11 1 222222 222 222 44444444444444444444 1 111 1 3333 22 22222 222 222 1
lowQualScore : 2 2 0 66 2 33 2 555 2 888 444 44 44 3 555 3 3333 6 77 3 3 99 999 7 3 000 3 55 3 3 6 7777 3 3 7 3 3 3 2 55 3 3 3 3 3 3 3 88888 3 6 77777 44 3 3 44 3 44 2222 3 3 3 3333333 4 777 3 3 3 1 55 55555 000000000 5 66 1 5 5 666 2222 44444 99 8 11 11 444 8 8 11 3 8 4444444444 8 0 1111111 0 3333333333 444 11 11 0 8 3 555555555555 0 0 3 0 111111 2 0000000 6 33 0 6666 2 0 0 8 8 66 8 444 3 22 1 0 33 33333 2222 5 777777777 999 33333 3 0 66 3 4444444444444 1 7777 000 00000000 0 6 000 111 6 5 77 5 99999 5 66666666 6 8888 7 7 7 3 9999 6 1 5 77 1 1 1 5 5 88 88 111 1 5 5 5 1 5 88 5 5 5 5 1 1 5 5 5 5 1 5 5 88 66 1 88 5 999999 1 111 000 55555555555555555555 3 666 2 2222 1 00 7 33333 333 000 5 22 1
lowQualScore : . . . .. . .. . ... . ... ... .. .. . ... . .... . .. . . .. ... . . ... . .. . . . .... . . . . . . . .. . . . . . . . ..... . . ..... .. . . .. . .. .... . . . ....... . ... . . . . .. ..... ......... . .. . . . ... .... ..... .. . .. .. ... . . .. . . .......... . . ....... . .......... ... .. .. . . . ............ . . . . ...... . ....... . .. . .... . . . . . .. . ... . .. . . .. ..... .... . ......... ... ..... . . .. . ............. . .... ... ........ . . ... ... . . .. . ..... . ........ . .... . . . . .... . . . .. . . . . . .. .. ... . . . . . . .. . . . . . . . . . . . . . .. .. . .. . ...... . ... ... .................... . ... . .... . .. . ..... ... ... . .. .
lowQualScore : 4 9 3 33 7 44 5 000 7 333 555 22 22 1 444 1 8888 7 99 3 3 22 222 3 6 000 6 00 6 6 4 7777 3 6 3 6 6 6 0 00 3 3 3 3 3 3 3 33333 3 7 22222 66 3 3 66 3 66 7777 6 6 6 8888888 0 000 9 6 6 0 55 66666 000000000 0 99 4 0 0 111 9999 33333 00 0 00 00 000 0 0 00 8 0 0000000000 0 6 8888888 8 2222222222 000 00 00 0 0 8 000000000000 0 0 2 0 555555 5 0000000 7 88 0 5555 5 0 0 0 0 55 0 000 2 55 0 0 88 33333 0000 5 000000000 000 33333 2 0 55 2 0000000000000 4 0000 000 00000000 3 7 888 777 7 7 99 7 77777 7 44444444 7 3333 3 3 3 3 3333 7 0 5 55 0 0 0 5 5 00 55 000 0 0 0 0 0 0 55 5 5 0 0 0 0 0 0 5 5 0 5 0 00 55 0 00 5 555555 0 555 555 33333333333333333333 3 777 0 3333 0 77 3 00000 333 555 5 00 0
consensus : ATATAAATTGGCGAAG-TAAACAAT--GTG-TT--AAA-CGTAATCA---T-AGTC---C-A-AA--AA--A-CAT---A-TA----CAAAA-TCGA--GT-G-T--AG---G-GCA-A---CACGGACC-T--CC-GA-CGA----AAGCGAA-G-GCAGG-A-TC-AG-GTGCC--ATG-GAGG-AGT-A-A-G-CA-TCCTC-----TG-CTG-AC-C---GG--T-CAC-AC--CC-GCCGTG--AGCCC----TTAGT-CG-AA-A---T---AA-AGTAAAC---GGGGT-TACC-CGTNG--TCAAA-----TCT---------A-GTA--GGAA-A-A-T-GACA---CT-----AACAAA--GGGTATGAAACA-AA--TC--AGTC---AAC-ATAT-GACTTA--GTGATAATT-TG--TAA-----TCG-CAAACAAGGTC-----GTTATAGCGACCGT--AG------AATTTG---CGAAAT--GAT--GACTTTAAA-CGANATTCGT-TATA--ACC-CTGC-AACATCAAC-TTTTN-G--TTAGTAGTTGGCC----CTTCGCTTTAAAAAGTCCTCAT--ACGC-AT-G-CATGCTCTT-GCG-TATCG-AA-TCAACTGGGAGACATTACACACCATAAG-CAGGTG---ATAGTGGG-TACATTNCTA-CAT--AGAAA-----AGGAAAGTTGACGTATTGCATTGGTCCGAGAGTCAAAGTCCANTCACGCTT-----ATCATATA-AATG-TAGTTGTCA-------------GACTG----CC-A-TTAGA-------AGTCAATATTAAG-TAAAAT---ATCC---AAATA-TGA-AGCAGATAT--GTCAG-AT-T--CTGT-GGTGTCCTTTA----TA--TCGAGT----TCTTCGGGATATATCAAAATGGA-AT-G-TTATGAAAATTNTGATTGTTAATTGATAACACATCATCTAATATAGCCCNATANGNAAGGTTGAAGGTACACCTGGCAAAGTTTCATTTTGNTTTCATCCCGTAAGCAGTTCCTCGNAGCAAATTTTCTGCTTCTGTATGATATATAAAAATAAGGTCTGCCAGTNANGGGGCACAATTAGTGCCCATAGTGAATAACCNACGAGATTGTTGGGAAAGACNATNGTCTGTCACAAAGACCACAGGATATTAGANATATTTATCTATGTGAGGAACCCAAGCATGCTCTTAATA--TTT--CATCT--A----CT-TCA-G-AGTACTTGT-TG-GNTGGCAATCAG-AAGTGTTTTTCTAACAAAATATGTTG-TCTTG---TTTCCCGCAGACGACCAGAATATTNNTATTTTCGGNTG
Reference ( family-235 ) : ATATAAATTGGCGAAG-TAAACAAT--GTG-TT--AAA-CGTAATCA---T-AGTC---C-A-AA--AA--A-CAT---A-TA----CAAAA-TCGA--GT-G-T--AG---G-GCA-A---CACGGACC-T--CC-GA-CGA----AAGCGAA-G-GCAGG-A-TC-AG-GTGCC--ATG-GAGG-AGT-A-A-G-CA-TCCTC-----TG-CTG-AC-C---GG--T-CAC-AC--CC-GCCGTG--AGCCC----TTAGT-CG-AA-A---T---AA-AGTAAAC---GGGGT-TACC-CGTNG--TCAAA-----TCT---------A-GTA--GGAA-A-A-T-GACA---CT-----AACAAA--GGGTATGAAACA-AA--TC--AGTC---AAC-ATAT-GACTTA--GTGATAATT-TG--TNA-----TCG-CAAACAAGGTC-----NTTATAGCGACCGT--AG------AATTTG---CGAAAT--GAT--GACTTTAAA-CGANATTCGT-TATA--ACC-CTGC-AACATCAAC-TTTTN-G--TTAGTAGTTGGCC----CTTCGCTTTAAAAAGTCCTCAT--ACGC-AT-G-CATGCTCTT-GCG-TATCG-AA-TCAACTGGGAGACATTACACACCATAAG-CAGGTG---ATAGTGGG-TACATTNCTA-CAT--AGAAA-----AGGAAAGTTGACGTATTGCATTGGTCCGAGAGTCAAAGTCCANTCACGCTT-----ATCATATA-AATG-TAGTTGTCA-------------GACTG----CC-A-TTAG--------AGTCAATATTAAG-TAAAAT---ATCC---AAATA-TGA-AGCAGATAT--GTCAG-AT-T--CTGT-GGTGTCCTTTA----TA--TCGAGT----TCTTCGGGATATATCAAAATGGA-AT-G-TTATGAAAATTNTGATTGTTAATTGATAACACATCATCTAATATAGCCCNATANGNAAGGTTGAAGGTACACCTGGCAAAGTTTCATTTTGNTTTCATCCCGTAAGCAGTTCCTCGNAGCAAATTTTCTGCTTCTGTATGATATATAAAAATAAGGTCTGCCAGTNANGGGGCACAATTAGTGCCCATAGTGAATAACCNACGAGATTGTTGGGAAAGACNATNGTCTGTCACAAAGACCACAGGATATTAGANATATTTATCTATGTGAGGAACCCAAGCATGCTCTTAATA--TTT--CATCT--A----CT-TCA-G-AGTACTTGT-TG-GNTGGCAATCAG-AAGTGTTTTTCTAACAAAATATGTTG-TCTTG---TTTCCCGCAGACGACCAGAATATTNNTATTTTCGGNTG
gi|1 : TGTAAAT-GGCGAAG-TAA-CAAGAGGTA-TC--AAA-CGTACTCA---T-AG-C---C-A-AA--AA--A-CAT-----------CACAA-TCGA--GT-GGT--AG---G-GCA-A---CACGGACCGT--CT-GA-CGA----AA-CGAA-GCACAGGAA-TC-AG-GTG-C--A-G-GA-G-AGT-A-A-GCCA-TCC-A-----TG-CTG-ACGC---GGGTT-CAC-AC--CCAGCCGTG--AGCTCTG--TTCGT-CG-GA-A---TTACAA-AGTAAAC---GAG---TACC-CGTCGCTTCGAAGATCCTCT---------A-GTATCGCAA-A-ACT-GACAGTGCTCCGACAACATATCGGGTAGGGAACACAAACTCCAAGCTACAAACGATATCCATTTAACGTG-TAATTCTGCCTAAAACAGCCGCCAAACCCGGTCCATTGATTA-GGCGACCGTTCAACGCTTTAATTTGTATCGTACTCGGATTCGA-TTTAAA-CGAGATGTGTGTATACCACC-CGGCAAACATC-AC-TTTTG-GATTTA-TAGTTGCCCCTCTCTTTGCTTTAAAAA-TCATCATGAACGCGAT-G--AT-CCCTTGGCG-TATCGCAATTCAACTGAGAGACATTACACAC--TAAGCCAGTTGGATATGGTGAGTTACACTTCTAGCATGCAGAAGCTAACAGGAAAG-TGACATATTGCATTGGTCCGAGAGTCAAAGTTCATTCACGTTTTTACCATCAT-TATGATGTTAGTTCTCATTGTTTTTTTCCTGACTGTGGCTT-ATTTAGAGGACTCAAGTCGATTTTAAG-TAAAATTG-CTTCGATAGATATTGATAGCA-CTAT--CTTGG-G-----GTGC-GGTGTCCTTTG----T
gi|1 : ttttattgtgaagtttttaaaaatttttctctaaatTCTAATATAGCCCTATAAAGAAAGT-GAAGGTACATCTGGCAAAGTTTCATTTTGATTTCATCC-GTAAGCAGTTCCTCGAAGCAAATTTTCTGCTTC-GTATGATATATAAAAATAAGGTCTGC-AGTTATGGG-CACAATTAGTGCC-ATAGTGAATAACCAACAAGATT-TTGGGAAAGACAATTGTCTGTCACAAAGACTACAGGATATTAGAGATATTTATCTAT---AAGAACCCAAGCATGCTCTTAATATGTTT--CATTT--AATCCCT-TCA-G-AGTA-TTGTGTG-GGTTGCAATAAC-AAGTGGTTCTCTGACAAAATATGTTATTCTTG---TTTTCCGCAGATGACCAGAATATTGTTATTTTCGGTTGggtgttgcccttttaagagagagagatccaacacatggtactgtatagactgctacgtaataatattgaaacttgaattatgtacagcttgaatactacgcaccagcgtatgggagtctaatatagccctataaagaaagtgaaggtacatctggcaaagtttcattttgatttcatccgtaagcagttcctcgaagcaaattttctgcttcgtatgatatataaaaataaggtctgcagttatgggcacaattagtgccatagtgaataaccaacaagattttgggaaagacaattgtctgtcacaaagactacaggatattagagatatttatctataagaacccaagcatgctcttaatatgtttcatttaatcccttcagagtattgtgtgggttgcaataacaagtggttctctgacaaaatatgttattcttgttttccgcagatgaccagaatattgttattttcggttgccttttggttcaactaaaggcaattatcaattatctgaataagtcctagattttgtaatttatttatcgaggaggaattttgtatatattgacagttgttcggatgaaatcaagtatggttttgatggcaatcaacattttagaaaaaatgtcgagacttgaagttatgtctaaagtctttagagttttgtgaagaatccaacaatctgattgtacaacccaacttctggaaattaattgtagttggaatgagtgcat
gi|10 : ttttattgtgaagtttttaaaaatttttctctaaattgtaaatggcgaagtaacaagaggtatcaaacgtactcatagccaaaaaacatcacaatcgagtggtagggcaacacggaccgtctgacgaaacgaagcacaggaatcaggtgcaggagagtaagccatccatgctgacgcgggttcacacccagccgtgagctctgttcgtcggaattacaaagtaaacgagtacccgtcgcttcgaagatcctctagtatcgcaaaactgacagtgctccgacaacatatcgggtagggaacacaaactccaagctacaaacgatatccatttaacgtgtaattctgcctaaaacagccgccaaacccggtccattgattaggcgaccgttcaacgctttaatttgtatcgtactcggattcgatttaaacgagatgtgtgtataccacccggcaaacatcacttttggatttatagttgcccctctctttgctttaaaaatcatcatgaacgcgatgatcccttggcgtatcgcaattcaactgagagacattacacactaagccagttggatatggtgagttacacttctagcatgcagaagctaacaggaaagtgacatattgcattggtccgagagtcaaagttcattcacgtttttaccatcattatgatgttagttctcattgtttttttcctgactgtggcttatttagaggactcaagtcgattttaagtaaaattgcttcgatagatattgatagcactatcttggggtgcggtgtcctttgtggtgttgcccttttaagagagagagatccaacacatggtactgtatagactgctacgtaataatattgaaacttgaattatgtacagcttgaatactacgcaccagcgtatgggagATATAAATTGGCGAAG-TAAACAAT--GTA-TT--AAA-CGTAATCA---T-AGTC---CCA-AA--AA--A-CAT---A-TATA--CAAAA-TCGA--GT-G-T--AG---G-GCA-A---CACGGACC-T--TC-GA-C-A----AAGCGAA-A-GCAGG-A-TC-GG-GTGCA--ATG-GAGG-AGT-A-A-G-CA-TCCTC-----TG-CTG-AC-T---GG--T-CAC-AC--CC-GCCGTG--AGCCC----GTAGT-CA-AA-A---T---AA-AGTAAAC---AGGGT-TACC-CGTccttttggttcaactaaaggcaattatcaattatctgaataagtcctagattttgtaatttatttatcgaggaggaattttgtatatattgacagttgttcggatgaaatcaagtatggttttgatggcaatcaacattttagaaaaaatgtcgagacttgaagttatgtctaaagtctttagagttttgtgaagaatccaacaatctgattgtacaacccaacttctggaaattaattgtagttggaatgagtgcat
gi|11 : gattattttcattg--AAA-CGTAATCA---TCAGCCAT-T-A-TA--AA--A-CAC---ATTA----CAAAATTCGGC-GTCG-T--AGT--GTGCATAGACCACGGACC-T---C-GA-TCACACTAAGCCAA-G-GCGAG-A-TC-AGTCCGCCATATG-GAGA-TGT-ACA-G-CA-TTCTCCTTCTTG-CTGTACGCTGGGG--T-CACAACGACC-GCCGTA--ATCCCCCTTTTAGTCCG-AA-A---
gi|12 : taacaatcaagtaccaAA-G-GCAGGAA-TC-A--GTGTC--ATGCGTAG-AGT-A-ATA-CAGTCCTC-----TGTCTGAAT-C---GG--TCCAC-AT--CC-AGCGTGAAAG-CC----TTAGT-TG-AACACATT---AATAGTAAACGGTGGAGTATACCGCGTCG--TCACA-----TGTATATTTAAGA-GTA--GGAA-ATA-TCGAC----CT-----AAAAAata
gi|13 : ATATAAATTGGTGAAG-TAAACAAT--ATG-TT--AAA-C-TAA
gi|14 : tacGTTGTCA-------------GTCTG----CC-A-TTAG--------AGTCAATAAAATG-TAAAGT---ATCC---AAATA-TGA-AGCAGATCT--GTCAG-AT-T--CTGT-GGTGTCCTTTATTATTA--TTGA-TAAAATCTTCAAAA-ATATGAAA----A-AT-G--TATGAAAatgcatggatatgaagtccacggaatcccaaaatacgcaacacagttaaggtgatcaacaacacatttccaataaaataaagcaagaaaaacatgccat
gi|15 : CAT--ACGC-AT-ATCATGCTCTT-GTG-TATCG-AA-ttactagaa
gi|15 : ACACATCATAA--CAGGTG---ATAGTGG--CATATTGCTA-CTT--AGAAA-----AGGA---TTGAgtnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncacacatcataacaggtgatagtggcatattgctacttagaaaaggattgat
gi|16 : catacgcatatcatgctcttgtgtatcgaagtnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncT-----GTTATATA-AATG-TAGTTATCA-------------GAATA----CCAA-ATAGAA------AGTCAACATTAAGTTAAAATAACACCA---AAATA-AGA-AGCAAATATCGGTAAGTATATAGTTGTAGGTGTTCTTAG----TAATTCGAt
gi|18 : ATATAAATTGGCGAAG-AAAACAAT--GAA-TT--AAA-TGCAATCA---T-AGTC---C-C-AA--AACCA-TAT---A-TA----CAAAT-TCGA--GC-A-T--AG---a
gi|19 : aatggctatatgaaattccattgtATA--TTTTACATCTTGA----CTATCACG-AGTATTTGT-TGCGCTGGCCATCAGTAAGTGTTTTTCTAAC-AAATATG-TG--CTTGCAATTTCC
gi|2 : ctcgattGCGAAG-TTAACATT--GTG-TC--AAA-CGTAATCA---T-AATC---C-A-AA--AA--A-CAT---A-TA----CAAAA-TCGA--GT-G-T--AG---G-GCA-A---CACGGACC-T--CC-GA-CAA----AAGCGAAAG-GTAGG-A-TC-AG-GTGCC--ATG-GAGG-AGT-A-A-G-CA-TCTTC-----TG-CTG-AC-C---G---T-CAC-AC--CC-GCC-TG--AGCCC----TTAGT-CG-AA-A---T---AA-AGTAAAC---GGAAT-TACC-CGTAG--TCAAA-----TCT---------A-GTA--GGAA-A-A-T-GACA---CT-----AACAAAA-GGGTATGAAACA-AA--TC--AGTC---AAC-ATAT-GACTTA--GTGATAATT-TG--ATA-----TCG-CAAACAAGGTC-----ATTATAGCGACCAT--AG------AATTTG---CGAAAT--GAT--GACTTTAAA-CGATATTCGT-TATA--ACC-CTGC-AGCATCAAC-TTTTTTG--TTAGTAGTTGGCC------TCGCTTTAAAAAGTCCGCAT--ACGC-ATAG-CATGCTCTT-GCGGTATCG-AA-TCAACTGGGAGATATTACACACCATAAG-CAGGCG---ATAGTGGG-TATATTACTA-CAT--AGAAA-----AGGAAAGTTGATG-ATTGCA---------AAGTTAAAGTC--ATCACGCTT-----ATCATATA-AATA-TAGTTGTCA-------------GTCTG----CC-A-TTAG--------AGTCAATGTTAAG-TAAAAT---ATCC---AAATA-TGA-AGCAGATAT--GTCAG-AT-T--CTAT-GGTGTCCTTTA----TA--TCGAGT----TCTTCGGGATATATCAAAATGGA-ATAA-TTATGAAAATTATGATTGTTAATTGATAACACATCATCT-ATATA--CCAATATGTAAGGTTGAAGG-ACAC--GGC--AGTT---TTTTGTTTTTATCCCGTAA-CAGTTTCT-GTA-CAAA--TTCTGCTTCTATATGA-ATATAAAAATAA-GTCTGCCAATAAGGGGGCACAATTAGTGCCCATAG-GAAT-ACCTACG-GATTGTTGG--AAGACC-TGGTC--TC-CAAAGACCACA------TAAATATAT---TCTATGTGAGAAACTCAAGCATGCTTTTAAT---------ATCT--A----CT-TCA-GAAGTACTTGT----GTGGACAATCAG--AGTGTTTTTCTAACAAAATATGTAG-TCTTG---TTTCCC---AACGACTAGAA-ATTCGTATTTTCGGGTG
gi|20 : atacaaaaaTAAATGAGCGAAGCTAAACAAT--GTGTTT--AAA-CGTAATCAAGTT-AACC---A-A-AA--AA--A-TAT---A-TA----C
gi|21 : atagtgaatttcaatTAT--GTCAG-AT-T--CTGT-GGTGTCCTTTA----T
gi|22 : ATATAAATTGGCGAAG-TTACCATT--GCA-TT--AAA-CGCAACCA---T-TATC---C-tacataatagccttctatattacgagtatgaaat
gi|23 : tcggtcttccaaG-GAGG-AGT-A-A-T-CA-TTATC-----TG-CCG-AT-T---GC--T-CAC-AC--TT-GTCGTG--GGTC
gi|24 : ATATACATTGGTTGAG-TAAACAAT--GTG-TT--AAA-CATAATCA---T-AGTC---tacgtcaa
gi|26 : actttcaATACAAATTGGCGAAG-TAAACAAT--GTA-TT--AAA-CGT
gi|27 : tacaT-CACC-CGTAG--TCAAA-----TGT---------A-GTA--GGGA-A-A-T-GACA---TT-----A
gi|28 : TCAATGTTGAG-TAAAAT---ATCC---ACATA-TGA-AGTAGA
gi|29 : A-AGCAGATCT--GTCAG-AT-T--CTAT-GGTGTCCT
gi|3 : ATATAACTTGGCGAAG-TAAACAAT--GTG-TT--AAT-CGTAATGA---T-AGTC---C-C-AG--AA--A-CAT---A-TA----CAAAG-TCGA--GT-G-T--AA---A-GCA-A---CACGGACC-T--CC-GA-TAA----AAGCGAA-G-GCAGG-A-TC-AG-ATGCC--ATG-GAGA-AGT-A-A-G-CT-TCCTC-----TG-CTG-AC-A---GG--T-CAC-AC--CC-ATCGTG--ACGGC----TTAGT-CG-AA-A---C---AA-AGTAAAC---GGGGT-TACC-CGTTG--TCAAT-----TCT---------A-GTA--CGAG-A-A-A-AACAAT-CT-----AACAAA--GGGTATAAAACA-AC--TC--AGTC---AAC-ATAT-GACTTA--GTGATAATT-TG--TAA-----TCG-CAAACCAGATT-----TTTATAGCGACCGT--AG------AATTTG---CGAAAT--GAT--GA-----------------------------CTGC-AACATCAACATTTTA-G--TTAGTAGTTGG------CTTCGCTTTAAAAAGTCCTCAT--ACGC-AT-GACATGCTCTT-GCG-TATCT-AA-TCAACTGGGAGACA-TACACACCATAAG-CAGGTG---ATAGT-GG-TACATTTCTG-CAT--AAA
gi|3 : atctcctcaataaattcgaagaaaatgtttaaggattaaggatatttagatacATA-AAT--T-GTTGTAA-------------GACTG----CC-G-TTAG--------AGTCAATATCAGG-TAAAAT---ATCC---AAATA-TGA-AGCAGATAT--TTCAG-AA-T--CTGT-GGTGTCCTCTA----TT--TCGAGT----TCGTCGGGATATATC-ATATGGACAT-GCTTAT-AAAATTCTGATTGTttgttgtaagactgccgttagagtcaatatcaggtaaaatatccaaatatgaagcagatatttcagaatctgtggtgtcctctatttcgagttcgtcgggatatatcatatggacatgcttataaaattctgattgtcgtaaaattatttgacaaga
gi|4 : atctcctcaataaattcgaagaaaatgtttaaggattaaggatatttagatacatataacttggcgaagtaaacaatgtgttaatcgtaatgatagtcccagaaacatatacaaagtcgagtgtaaagcaacacggacctccgataaaagcgaaggcaggatcagatgccatggagaagtaagcttcctctgctgacaggtcacacccatcgtgacggcttagtcgaaacaaagtaaacggggttacccgttgtcaattctagtacgagaaaaacaatctaacaaagggtataaaacaactcagtcaacatatgacttagtgataatttgtaatcgcaaaccagatttttatagcgaccgtagaatttgcgaaatgatgactgcaacatcaacattttagttagtagttggcttcgctttaaaaagtcctcatacgcatgacatgctcttgcgtatctaatcaactgggagacatacacaccataagcaggtgatagtggtacatttctgcATACAAAAAGGCGAAG-TTAACATT--GTG-TC--AAA-CGTAATCA---T-AATC---C-A-AA--AA--A-CAT---A-TA----CAAAA-TCGA--GT-G-T--AG---G-GCA-A---CACGGACC-T--CC-GA-CGA----AAGTGAA-G-GCAGG-A-AC-AG-GTGCC--ATG-GAGG-AAT-A-A-G-CA-TCCTC-----TG-CTG-AC-C---GG--T-CAC-AC--CC-GCCGTG--AACCT----GTAGT-CG-AA-A---T---AA-AGTAAAC---GAGAT-TACC-CGTAG--TTAAA-----TCT---------A-GTA--G--A-A-A-T-AACACGTCT-----AACAAA--GGGTATAGAACA-AA--TC--AGTC---AAC-ATAT-GACTTA--GTGATAATT-TG--TAA-----TCG-CAAACAAGGTC-----A-TATAGCGACCGT--AG------AATTTG---TGAAAT--GAT--GACTTTAAA-CGAGATTCGT-cgtaaaattatttgacaaga
gi|5 : tgtttccattttttgtttacctgaggttttgttagatcgagtaaactatttttgaagtttctgttcaagaaatgcttattaagtgtgttaactaatatgg-AGTT---C-A-AG--AG--A-GATTGAA-TG-----AAAA-TGGA--AT-G-C--AGTTAG-ACA-AA--CACAGACC-C--CT-GG-ATA----TATCAGA-G-GTGGG-A-TC-AG-GTGTC---T---AGG-AGTTA-A-G-CG-TCTCC-----TG-TCA-AT-C---GG-----AC-AC--T--ATTGT-------C----TTTTT-C--------------A-GGTAAAC---GGAGT-TAAC-CGTTG--TCAAAA----TCA---------ACGTA--TAAAGA-A-C-GGC----CT-----AACAAC--TGCTATGAAACA-CA--TC--GGAC---AGC-ATTT-AACCCA--ATGGCAGGC-CA--TGC-----TGG-CAAACAAAATC-----GTTATAACGA-CAT--AT------AATTTG---CGAAAT--GTT--GACTTTAAAGTGACA---GT-TGAA--ACCTCTGC-AACATCAAC-TTT---G--TCAGT
gi|6 : aaacataaaattatcatatctcttttcgATAGAAAATGGCGAAG-TTAACAAAA-GTA-ATCAAAA-CGTAATCA---T-AGTC---C-A-AA--AA--AACAC---A-TT----CAATA-T-GA--GT-G-TTTAG---G-GCA-A---CACGGACC-T--TC-GA-CGA----AAGCGAA-G-GCAGG-ATTC-AG-GTG-C--ATG-GAGGAAGT-A-A-G-GC-TCCTC-----TG-CTG-AC-C---GG--T-CAC-A---CC-GCCGTG--AGCCC----TTAGT-CGAAA-A---TAA-AA-AG-AAAC---GGGAT-TACC-CGTGG--TCAAA-----TCT---------A-GTA--GGTA-A-A-T-GA
gi|7 : tttgaatcgaggcaagctacttacagacaagttgttgttggcagggggtttcttaaACATC--GTG-TT--AAAACATAAT-A---T-AATTACTC-A-AA--AA--A--AT---A-TAA---CAAAACTCGAAAGA-G-TTGAG---G-GCA-A---CACGGATC-CAACCAGACCAA----AAGCGAA-gcaattttcgcatatttcgagcaaaggtaaacacaagta
gi|8 : agagtaagatctacagcatcaagtcttgaacgttgtagggttaccattgagtttataatggtctttcatacgataaaccgatgtcccgtgtcaacagcagagtcgcatcgaataaagattcctccctgccaattagtgccctgagtggccgagttaatttgcagcacaatcactcttcgcaatgtacgtcttcctatacaaatacttagaggcccgaaagttccATATAAAT-GGCGAAG-TAAACAAT--GTG-AC--AAT-TGTAATCA---T-AGTC---C-CCAA--AA--A-CAT---A-AA----CAAAA-TCGA--GT-G-T--AG---G-GCA-A---CACGGACC-T--CC-GA-CAA----AAGCGAA-G-GCAGG-A-TC-AG-GTCCC--ATG-AAGG-AGT-A-A-A-CA-TTCTC-----TG-CTG-AT-C---GG--C-CAC-AC--CC-GCCGTA--AGCCC----GTAGT-CG-AA-T---T---AA-AGTAAAC---G-----------GTTG--TTAAA-----TC
gi|8 : gtaaattgccactgaatttctcaaacattaaagatctttgaataataagtatactttataag-AA-TCAACTGAGAGACAT-ATACACCATAAG-CAGGTG---ATAGTAGaactgagagacatatacaccataagcaggtgatagtagtctg
gi|9 : gtaaattgccactgaatttctcaaacattaaagatctttgaataataagtatactttataagatataaatggcgaagtaaacaatgtgacaattgtaatcatagtccccaaaaacataaacaaaatcgagtgtagggcaacacggacctccgacaaaagcgaaggcaggatcaggtcccatgaaggagtaaacattctctgctgatcggccacacccgccgtaagcccgtagtcgaattaaagtaaacggttgttaAATTAGCGAAG-TTAACATT--GTA-TT--AAA-CGTAATCA---T-AATC---C-T-AAGCAA--A-CAT---A-TATACACAAAG-TCAA--AT-G-T--AG---GCGAA-A---CACGGACC-T--CC-GA-CAA----AAGCAAA-G-GCAGG-T-TTTAG-GTGC---ATG-GAGG-AGT-C-A-G-CA-TC-TC-----TG-CTG-AC-C-------T-CAC-AT--CC-GCCGTG--AGCCG----TTAGT-CG-AA-A---T---AA-AGTAAAC---GGGAT-TACC-TGTAG--TCAAtctg
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|17 ): AAGATGTATCGTATTTTCAAACTAGTAAGAAAGTGTATAGCTTCTGGGCTTTAGAACGTTCGAGACAAGCAGTCCACCAACAGAGGTGTTGAACCGTGATCTAATGCA
Unaligned ( gi|25 ): TGTAGGTATGCTTCATGCATCTTTCAACAAAAGAACAGAAAA