lowQualScore : 2222 11 1111111 2222222 11111111 1 666666666666666666666666 11 11 111111 1 222 1111 11 11 1 111 111111 111 1 11 1 11 111111 2222222222 1111111 1 222222222 111111111 111111 111111 333 11111 2222222222 11 2222222 1111111 22222 5555555555555555555555555 3333333333333333333 111 11111 444444444444444444444444444444 33333 3333 22222222222 1111111 11111111 111 11111 33333333333 111111
lowQualScore : 6 3333 1 44 8888888 6 1111111 6 6 2 6 6 33333333 6 1 6 333333333333333333333333 999 777 77 6 6 6 6 11 8 8 8 8 11 77 2 999999 3 111 1 2222 33 6 1 5 888 8 11 3 111 111111 3 6 6 111 3 55 5 1 33 5 666666 77 0 77 0000000000 1 1 5 5 3 8888888 555 4 4 0 5 66 888 66 4 777 2 33 666666666 3 5 888 777 777777777 333333 66 888888 888 4 000 4 3 22222 66 0 666666 2 777 4 4 5555555555 4 00 777 4 1111111 4 9999999 4 4 77777 888 4 4 1111111111111111111111111 4 777 8888888888888888888 222 77777 6 888 2 66 999999999999999999999999999999 1 11111 22 0 1 4 2222 4 777 4 4 777 4 55 4 4 22222222222 4 8888888 11111111 66 1 0 444 4 88888 4 4 77777777777 4 000000 2 888 7777 9 3 3 3 3 3 3 3
lowQualScore : . .... . .. ....... . ....... . . . . . ........ . . . ........................ ... ... .. . . . . .. . . . . .. .. . ...... . ... . .... .. . . . ... . .. . ... ...... . . . ... . .. . . .. . ...... .. . .. .......... . . . . . ....... ... . . . . .. ... .. . ... . .. ......... . . ... ... ......... ...... .. ...... ... . ... . . ..... .. . ...... . ... . . .......... . .. ... . ....... . ....... . . ..... ... . . ......................... . ... ................... ... ..... . ... . .. .............................. . ..... .. . . . .... . ... . . ... . .. . . ........... . ....... ........ .. . . ... . ..... . . ........... . ...... . ... .... . . . . . . . .
lowQualScore : 7 3333 0 00 8888888 7 7777777 7 7 5 7 7 55555555 7 5 7 888888888888888888888888 222 555 77 7 7 7 7 00 0 0 0 0 00 00 5 222222 3 000 0 7777 33 7 0 0 888 0 22 3 777 888888 5 7 7 777 3 88 7 4 66 7 444444 99 7 99 9999999999 7 4 7 7 0 6666666 999 4 4 9 0 99 888 99 4 888 2 22 666666666 9 0 888 666 888888888 777777 11 999999 222 4 000 4 9 44444 11 8 222222 2 888 4 0 6666666666 4 66 888 4 8888888 4 2222222 4 4 99999 000 4 4 6666666666666666666666666 4 888 8888888888888888888 222 22222 2 888 2 99 555555555555555555555555555555 7 99999 99 3 1 4 7777 6 888 4 4 000 0 55 0 0 11111111111 4 7777777 00000000 77 1 8 444 0 99999 0 0 66666666666 0 555555 1 666 1111 0 3 3 3 3 3 3 3
consensus : ATATGAATTATTGT-TATC----TCAAAC-TGTTGAA-T---GTTAA-AATG-------GACACAAA-CTGA-TNTATT-CTATTT-TTT---AAC-TCGAA-TTNACTTATAAAGAAA-TAGTGTGTTGTGTACGGTAACTTTGC-CGGAGCAACGCATTCGT-C-TTCA-GCCCT-ATATA-TA-ATTT-GTAA--GA-GCTGATTTCAG-T-TGTGAT-T--TCGTATCTGACTTCATTGTT------ACAT-TTGCACG--ACCTG---GTATAGGACTT-GTCGA-ACGTGTACTTCTT-TGGTA-T-NTCCCTCT-AT---TTTTG--T---TTTGTTTT-TA-TT---TTGC-TTTGGT--A-ACAAT-TCAA--CATT-ATG------GAGG--CCTA--GGGCA-ACATTT---ACAACTTG-CTCGT-CTGTGCCC-------TTTTGT-T-AGCGGC-TGCCT-ACCATTTCA-A--T---AT--CGGTAGAC-GACA---TAGAGGTTGTTAAATTCAA------T--TTCT-C---TTA-TGTCTTT---------CCTG-C-C--A--TCTT------GAAC--NC-AA--TAC-ACGTAAATGAAAATATCC-T--CA--AAT-TGT--ATAT---AA-CAA-C----------TTA-ATT--CCC---AT-A----C--A-ATAT------NAAA-TCA-ATCTC-AGT-TAT-C-AATCAA-AA-TTA----------------C-T------GC-AA---AA--------GAA---C-TA-AC---GT-----GTTATATTTG---TGCCCTTTTTAG--ACTA----CCA-----T-GA--------------AAATGGTTGTTCACAAACTATTTGACTTGCCA-AACGGAC-CTATAAG---AG-CATGT-CTC---TAT-TC--GGTCT-G-ACTCCAT-----CTG---AC-TTC----GC-AT----CT-NTC-ATAAGATATTTTC-CGA----NT-AC-A-TN--A-CAT-G-ATT------TGTNAG-A-T----GTGGCGA-G-T-CAG-AT-C-TG-ATAAATCA
Reference ( gi|4 ) : ATATGAATTATTGT-TATC----TCAAAC-TGTTGGA-T---GTTAA-AATG-------GACACAAA-CTGA-TGTATT-CTATTT-TTT---AAC-TCGAA-TTTACTTATAAAGAAA-TAGTGTGTTGTGTACAGTAACTTTGCCCGGAGCAACACATTCGT-C-TTCA-GCCCT-ATATA-TA-ATTT-GTAA--GA-GCTGATTTCAG-T-TGTGAT-T--TCGTATCTGACTTCATTGTT------ACAT-TTGCACG--ACCTG---GTATAGGACTT-GTCGA-ACGTGTACTTCTT-TAGTA-T-GTCCCTCT-AT---TTTTG--T---TTTGTTTT-TA-TT---TTGC-TTTGGT--A-ACAAT-TCAA--CATT-ATG------GAGG--CCTA--GGGCA-ACATTT---ACAATTCG-CTTGT-CTGTGCCC-------TTTTGT-T-AGCGGC-TGCCT-ACCATTTCA-A--T---AT--CGGTAGAC-GACA---TAGAGCTTGTTAAATTCAA------T--TTCT-C---TTA-TGTCTTT---------CCTG-T-T--A--TCTT------GAAC--AC-AAGTTAC-ACGTAAATGAAAATATCC-T--CA--AAT-TGT--ATAT---AA-CAA-C----------TTA-ATT--CCC---AT-A----C--A-ATAT------TAAA-TCA-ATCTC-AGT-TAT-C-AATCAA-AA-TTA----------------C-T------GC-AA---AA--------GAA---C-TA-AC---GT-----GTTATATTTG---TGCCCTTTTTAG--ACTA----CTA-----T-GA--------------AAATGGTTGTTCACAAACTATTTAACTTGCCA-AACGGACGCTATAAG---AG-CATGT-CTT---TAT-TC--GGTCT-G-ACTCCAT-----TTG---AC-TTC----GC-AT----CT-TTC-ATAAGATATTTTC-CGA----AT-AC-A-TA--A-CA--G-ATT------TGTAAG-G-T----GTGGAGA-G-T-CAG-AT-C-TG-ATAAATCA
gi|5 : ATATGAATTATTGT-TATC----TCAAAC-TGTTGGA-T---GTTAA-AATG-------G-CACAAAACTGA-TGTATT-CTATTT-TTT---AAC-TCGAA-TTTACTTATAAAGAAA-TAGTGTGTTGTGTACAGTAACTTTGCCCGGAGCAA-ACATTCGT-C-TTCA-GCCCT-ATATA-TA-ATTT-GTAA--GA-G-TGATTTCAG-T-TGTGAT-T--TCGTATCTGACTTCATTGTT------ACAT-TTGCACG--ACCTG---GTATAGGACTT-GTCGA-ACGTGTACTTCTT-T-GTA-T-GTCCCTCT-AT---TTTGT--T---TTTGTTTT--A-TT---TTGC-TTTGGT--A-ACAAT-TCAA--CATT-ATG------GAGG--CCTA--GGGCA-ACATTT---ACAATTCG-CTTGT-CTGTGCCC-------TTTTGT-T-AGCG-C-TGCCT-ACCATTTCA-A--T---AT--CGGTAGAC-GACA---TAGAGCTTGTTAAATTCAA------T--TTCT-C---TTA-TGTCTTT---------CCTG-T-T--A--TCTT------GAAC--AC-AAGTTAC-ACGTAAATGAAAATATCC-T--CA--AAT-TGT--ATAT---AA-CAA-C----------TTA-ATT--CCC---AT-A----C--A-ATAT------TAAA-TCA-ATCTC-AGT-TAT-C-AATCAA-AA-TTA----------------C-T------GC-AA---AA--------GAA---C-TA-AC---GT-----GTTATATTTG---TGCCCTTTTTAG--ACTA----CTA-----T-GA--------------AAATGGTTGTTCACAAACTATTTAACTTGCCA-AACGGACGCTATAAG---AG-CATGT-CTT---TAT-TC--GGTCT-G-ACTCCAT-----TTG---AC-TTC----GC-AT----CT-TTC-ATAAGATA--TTC-CGA----AT-AC-A-TA--A-CAT-G-ATT------TGTAAG-G-T----GTGGAGA-G-T-CAG-AT-C-TG-ATAAATCA
gi|1 : ATATGAATTAT-GTGTATC----TCAAAC-TGTTG-A-T---GTTAA-AATG--------ACACAAA-CTGA-TGTATT-CTATTT-TT----AACATGAAA-TTTACTTATAAAGAAAATAGTGTGT-GTGTACAGTAACTTTGCCCGGAGCAACACATCCGTTC-TTCAAGCCCTTATATA-TA-ATTTTGTAA--GA-GCT-ATTTCAG-T-TGTGATCT--TCGTATCTGACTT-ATTGTT------ACATCTTGCACG--ACCGG---ATATAGGACTT--TCGA-ACGTTGACTTCTTGTAGTA-TTGTCCCTCTTAT---TTTTG--T---TT-GTTTT-TA-TT---ATGC-TTTGGT--A-ACAAT-TCAAA-CATT-ATG-------AGG--CCTA--GG-CA-ACATTT---ACAATTCG-CTTGT-CTGT-CCC-------TTTTGT-T-AGCGGC-TGCCT-ACCATTTCA-A--T---AT--CGGTAGAC-GACA---TAGAGCTT--TAAATTCAA------T--T-CT-C---TTA-TGTCTTT---------CCTGGT-T--A--TCTTTT----GAAC--ACCAAGTTAC-ACGTAAATGAAAATATCCCT--CA--AAT-TGT--ATAT---AA-CAAAC----------TTA-ATT--CC----AT-A----C--A-ATAT------TAAA-TCA-ATCTC-AGT-TAT-C-AATCAA-AA-TTA----------------C-T------GCCAA---AA--------GAA---C-TA-AC---GT-----GTTATATTTG---TGCCCTTTT-AGGGACTA----CTA-----T-GA--------------AAAAGGTTGTTCACAAACTATTTAACTTGCCA-AACGGACGCTATAAG---AG-CATG--CTT---TAT-TC--GGTCT-G-ACTCCAT-----TTGCTTCC-TCC----GC-AT----CT-TTCAATAAGATA--TTC-CGA----AT-AC-A-TA--A-CAT-GCATT------TGTAAG-G-T----GTGGAGA-G-T-CAG-AT-C-TG-ATAAA
gi|6 : taacgcaatgacattttggcgtttaattcgcaataatatttgcggttaatcgcaatacctttatATATACATTATTCT-TGTG----TCCAA--TACTGGA-T---GTTGATAATGTGGACCTGAC-CACA-CTGA-TCTATT-CTATTA-TTT---CAC-TCGAA-TTAACTTAAGATGAAA-TAGTGTGTTGT------TAGCTTGGCAC----CAAAGGATTCGT-CATTTA--CACT-GTATG-TA-ATTT-GTatc
gi|7 : TATAAATTATTGT-TA-C----T--GAC--GTTGA-------TTAA-A-TG-------GACACAAA-CTGACTGTATTGCTATTTGTTT---AACGTCGAA-TG-ACTTATAAGAAAT-TAGTTGGTTG---------------------GCAACGAATTCGT-C-TTCA-AGCCT-ATG-A-TAGATTT---AA--GAAGCTGATTTCAG-TGTGTGAT-T--TCG-----GCC------GTT------ACGTATTGCATC--AGCTG----TATAG-ACTTCGTCGC-ACG-GTACTT-TA-CGGTAGT-TTCCCTCTGAT---TT--G--T---TTTTTTTT-TA-TT---TTGCATTTGGT--ATACAATGTCAA--CATT-ATG------GAGG--CCTA--GGGCA-ACA--T---ACAACTTGTCTTGTGCTGTGCCC-------TTTTGT-TAAGCGGCTTGTCT-A-CATTTCAGA--TGCGAT--CGGTAGAC-GACAAGCTAGAGGTTGTT--ATTCAAAAGC--TCGTGCTGC---TTATTGTCGTT---------CCTG-TCT--AACTCTT------GAAC--AC-AA--TACGACGTAATCGAAAA-AT-C-T--CA--AA--TGT--ATAT---AACCAA-TCG--------TTG-ATT--CCT---AT-AAGATCAGA-ATAT------TCA----A-ATATC-AGT-TATCC-AATCAATAA-TTA------------------T------GC-AA---AA--------GAA---C--A-ACG--GTGG---GTTA---TTG---TGCCCTTTTTAG--ACgtccgaatctgcctgctactagcacatagaggtatttttctccctttatgtgttttgtatgtttcttttataattaaattacatttgtttaacagtatcaaaacattacgagagatgaaacagagcaaacttacatttgctcgtctctctccgacgctattttgagcgtatatctatatattccgttagatagacataagtgttattctatttttcatattatctctttttttcttcccttgctccctctctggcgaaccaacaacctacccccacaaaaaaatcgtttattaatacgacttttattccccatatataatatatcatgcaaactcacatctctatatctaatcaaattgctatggaagcaaaatttctgaaaaatccacgtgttattttgtgtcctattcagattatcaccttctgacctggtttttcaaatggttgacgggaaagagaagcatgtctcatatatataattctaactccatatcgtcatatgattttccgattatatcgtcatggtttgtcagatgtggcgagttcagatctgac
gi|3 : tttagGAATTATTGT--ATCAC--TCAAAC--GTTGAAGT---GTTAA-AATG-------GACA-AAA-CTGA-TTTATT-TTATTT-TTTTGTAAC-TCGAAATTGACTTAAAAAGAAA-TAGTGTG-----TATGG----------CGAA----------CGT-A-TTCA-GCC-T-ATATAATA-ATTT-GTAATGAA-GCTGATTTCAGAT-TGTGTT-TATTCGT-------TACATTGCTCGTATCATAT-CTA-ACGG-ACCTGTATGTAAAGGACTT--TCGACAC-TATTGTTATT-TGATT-T-ATC------AT---TTTTGACT---TTAGTTTT-TA-TT---GTG---TTGGTGAA-ACAAT-TCAA--CATTTATG------GAGGTTCCTATGGGGCATACATTTTTTACAACTTG-CTTGT-CTGTA-CC-------TTTTGTAT-AGC-GC-TGTCT-ATTAATTTA-AAGT---AC--AGGTAAAC-----------------TTCAATGCAATCATACT--TTCT-A---TTA---TCT------------CTG-C-CAAA--CCTT------GAAC--AC-G---TAC-ACGTAAATGAAAAAATCTAT--CA--AGT-TG---ATTT---AA-CAA-C----------TTATATTG-TGC---ATAA----C--A-ATAT------AAAA-TC-------------------ATCAA-AACTTA----------------C-TTC----GC-AA---AA--------GAA---CGTAGACTTAGTCCCACGTCGTATTTAGATTGAGCCTTATAG--ACTA-----TA-----TAGT--------------CAATAAGTG-TGACATACT-TTTAACTTGCAA-AAC-GACGCTATAAGTAAAGACATGTACTT---TAT-TCGTGGTCT-GAACTTCATCGTAATTGAACAC-TCTGTGAGC-ATAAAAGT-CTC-ATAGAAGATTATT-CGA----ATAACAA-TC--A-CATGA-ATT------TGTAAGTG-T----GTGGAGAGG-T-TAG-AT-A-TG-ATAac
gi|2 : ATTTTTTT-TATTGCGTTTAAACATGTTAAA-TTATGTTAA-AATG-------GACACAAA-CTGG-TTTATT-ACATTT-TTC---A-T-TCGGA-TTGACTTATAAAGAAA-TAGTGTATATTGT---TTAACTTTACAC----CAACACATTCGC-C-TTCA-GCCCT-ATATA-TA-ATTT-GTAA--GA-GCTGATTTTAG-T-TGTGAT-T--TCGCATCTTACTTCATTGTT------ACAT-TTGCACATAATTTG---GTTTATGACTT-GTCGG-ACATGTACTTCTT-TAGTA-T-TTCCCTCC-AG---TTTTG--T---TTTGTTAT-TA-TT---TTGC-TTTGGT--A-ACAAT-TCAA--CATT-ATG------GAGG--CCTA--GGGCA----------ACAACTTG-CTAGT-CTGTGCCC-------TTTTGT-T-AGCGGC-TGCCT-ACCATTTCA-A--T---AT--CGGTAGAC-AACA---TAGAGGCTGTTCAATTCAA------C--TCAT-C---TTA-TTTCTTC---------CGTG-C-C--A--TCTT------GAAC--CC-AA---AC-ACGTAAATGAAAATATGC-T--CA--AAT---T--ATAT---AA-CAA-CTTAATTGAAGTTA-ATT--CCC---AT-A----A--A-ATAT------GAAA-TCA-ATCTC-GGG-TAT-T-AATCAA-AA-TTA----------------C-T------GC-AAAACAA--------AAA---C--A-AC---GT-----GTTATATTTG---TGTCCTTTTAAG--GCTA----CCATTTT-T-TA--------------AAATGGTTG-----AAACTATCTAACTTGCCA-AACGGACCCTATAAG---AG-TATGT-CTT---TAT-TC--AGTCT-G-ACTCCAT-----TTG---AC-TTC----GC-AT----CT-GTC-ATAAGATA--TTC-CGA----TT-AC-A-TC--A-CAT-A-ATTTGTAAATGTAAG-A-T----GTGGCGA-G-T-CAG-AT-T-TG-ATAAATCAtaacata
gi|17 : tacggaagcccattgaggccagtttaaagaaagatATCTGACTTCATTTTC------CTAT-TTACAC-------G---GTAT--GATTT-GTCAG-ATGTGta
gi|6 : tctattcgatcggactccTCCCTTT-ATGTGTTTTG--TATGTTTCTTTTATAATTAAATTACATTTGTTT-A-ACAGTATCAAAACATT-ACGAGAGATGAAA--C--A--GAGCA-A-ACTT---ACA-TTTG-CTCGT-CTCTCTCCGACGCTATTTTG----AGCGTA-TATCT-AT--------A--T---ATTCCGTTAGATAGACA---TA-AG--TGTTA--TTCTA------T--TTTT-CATATTA-TCTCTTTTTTTCTTCCCTTG-C-T--C--CCTCTCTGGCGAACCAAC-AACCTAC-CCCCACA--AAAAAATCG-T--------T-TATTAATAC---GA-C---T----------TTT-ATT--CCCCATAT-A----T--A-ATATATCATGCAAACTCACATCTC---TATAT-CTAATCAA-A--TTG----------------C-TATGGAAGC-AA---AATTTCTGAAAAA---T-CC-AC---GT-----GTTAT-TTTG---TGTCCTATTCAG--ATTA----TCACCTTCT-GA--------------CC-TGGTTTTTCA--AA-TGGTTGACGGG--A-AAGAGA------------AG-CATGT-CTCATATATATA--ATTCT-A-ACTCCAT-----------A---TC----G------------TC-ATATGAT--TTTC-CGA----TT-AT-A-TC--GTCAT-G-GTT------TGTCAG-A-T----GTGGCGA-GTT-CAG-AT-C-TG-gcgagtcagatgtgaaaaatcatatcg
gi|16 : atatacattattcttgtgtccaatactggatgttgataatgtggacctgaccacactgatctattctattatttcactcgaattaacttaagatgaaatagtgtgttgttagcttggcaccaaaggattcgtcatttacactgtatgtaatttgtgtccgaatctgcctgctactagcacatagaggtatttttc-ACAAT-TCAA--CATT-TTG------AAGG-----A--AGACA-A---TC---ATATTTTA-CTCAT-TTGTGCCC-------CAATGT-T-AGCGGT-TGCCTCATCATc
gi|27 : tcctattttGGT-TGCCT-ACCATTTCA-A--T---AT--CCGTAGCA-GACA---CAGAGGTTGcatcattcattgg
gi|26 : C-TGCCT-ACCATTTGA-A--T---AT--TCGTAGAA-GACA---TAGAAGTTGTTAAc
gi|15 : TAGAC-GATA---TCGAGGTTGTTAAATTCAA------C--TCCT-C---TTA-TGTTTTT---------CCTG-C-C--A--TCTT------GAAC--CC-AA---AT-ACGTAAATGAATATATCT-A--CA--AAT-TGT--ATAT---AA-CAA-
gi|9 : ------T--TTCT-C----------CTTT---------CCTG-C-C--A--TTTT------TAAC--TC-AA---AC-ACATGAATGGAAATGTC--T--CACCAATATTT--AT-C---AA-CAT-C----------TTA-ATT--CTC---AT-AT---C--A-AT-------------TTA-ATCTCTA---TAT-T-AATCTA-AA-TTA----------------CGTTGGA--GC-AA---AAATTAGGG-GAAAATC-T--AC---GT-----GTTAT
gi|8 : tcaacaaccttttT---------CCTG-T-C--A--TCTT------GAAC--TC-AAAT------GTAAATCAGAACGTCC-CGCCA--A-----T--ATTTCCCAA-CAT-C----------T---ATTAACCT---AT-AA---C--ATATAT------AAAA-TTA-ATCT----T-TG----AAGCAA-AA-GT-------------------T------GG-AG---AA--------AAA---T-CC-AC---GT-----GTTATAT--G---TGCTGTATTTAG--ATTAACCTTTA-----T-GACCTTTTTTTTTTTTAATTAGTTA-----AAACCATCAGACTTGACA-GACAGA----ATA-G---AG-AATTT-CTC---TAT-TC--GATCT-G-ACTCCAT-----CTG---AC-TTC----ATGAT----CT-GTC-TTATG--ATTTTC-CTAT---TT-AC-A-CG--G-TAT-G-ATT------TGTCAG-A-TGCACGTTGCGA-G-T-CAG-AT-CGTG--TAAAttaaaccatctgacttgccagacggaatagattatatctctattcgatcttactttatttctgtcgtgtaaaatgtggcgagtcagatctcataa
gi|14 : A-C----------TTA-ATT--CCC---AT-A----A--A-ATAT------GAAA-TTA-ATCTC---TATAT-C-AATCAA-AA-TTATTTTGGACCAGAAGTTC-T------GC-AA---AA----------A---G-TC-AC---GT-----CTTAT--TTG---TGCCCTCTTTAG--ACTA----CCA-----
gi|10 : --------------AAATGGTTG------AAC-------CTTGCCC-AACGGA----A-AAG---AT-CTTTC-CTC---TAT-TC--GGTCCAG-ACTCCAT-----CTG---ACTTTC----AC-AT----CTGTCC-ATAAGATA--TTCACGA----TT-AC-ATTATCA-CAT-C-ATT------TGTTAG-A-T----GTGGCGA-A-TCCAGAAT-C-TG-
gi|9 : GTTATTTA--AACCATCTGACTTGCCA-GACGGA----AT-AG---AT-TATAT-CTC---TAT-TC--GATCT-T-ACTTTAT-----TTacaaacatat
gi|13 : tcaacaacctttttttctcctttcctgccatttttaactcaaacacatgaatggaaatgtctcaccaatatttatcaacatcttaattctcatatcaatttaatctctatattaatctaaattacgttggagcaaaaattaggggaaaatctacgtTTGACTCGACATGACGGA----ATA-G---AG-CATGT-CTC---TAT-TC--GATCT-G-AC-CCATG----CTGA--AC-TT--------AT----AT-GTC-TTAATGT-TTTCC-CTA----TT-TC-A-CG--G-TAT-G-ATT------TGTCAG-A-T----GTG--GA-G-T-CAC-AT-C-TG-ACActgtcgtgtaaaatgtggcgagtcagatctcataa
gi|17 : aTC---TAT-TC--GATCG-G-ACTCCAT-----CTG---AC-TTC-------AT----TT-TCC-------TATTT-------------AC-A-CG--G-TAT-G-ATT------TGTCAG-A-T----GTGGCGA-G-T-CAG-AT-G-TG-AAAAATCAccataatc
gi|18 : ATTTTC-CTATTTTAC-AC-AGTA--A-TA--G-ATT------TGTAAG-ATT----ATGGCGA-G-T-CAG-ATCC-TGAACAAATCAtatcg
gi|9 : ttcttg------TGTAAA-A-T----GTGGCGA-G-T-CAG-AT-C-TC-ATAAtatcgtgtaa
gi|32 : tcaacaacctttttttctcctttcctgccatttttaactcaaacacatgaatggaaatgtctcaccaatatttatcaacatcttaattctcatatcaatttaatctctatattaatctaaattacgttggagcaaaaattaggggaaaatctacgtgttatttaaaccatctgacttgccagacggaatagattatatctctattcgatcttactttatttctgtcg-T----GTGGCGA-G-T-CAG-AT-C-TG-ACAAATCA
14 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|11 ): CNGAAATTGATTCCCATAATATATGAAATTAAGGCCTAAATTAAAATTTTGTTTGTTNNNNNNNNNNNNNGTGTTATTTGTGCTTTGCGCTACCTTTCGGCTAGTTTTTCTGACTTGCCAGACAGAATAGAGCACGTCTCTTAT
Unaligned ( gi|12 ): CCCTGCTATTTTGAGCTCAGATATGAATCAAAATTTTCTCAACATCCTCATAACCATAATAGGTGTACATCAAATTACACTCTGCATTCTTTGAAGGAAACGTTTGGGGGAAAATCCACGTGTTTTTGTGCTGT
Unaligned ( gi|19 ): CTACGGAAGCACCATTGAGCCAGTTTATAGAAAGATATTTTTTTTATTGGTTTAAACGCATTAA
Unaligned ( gi|20 ): TCCTGCCATTTTGAATTCAAACGTAAATCAGAGTGTCCCACCCATATTTCCCAACATC
Unaligned ( gi|21 ): TTAACGCAATAATGTGCGTTTAATCCAATGAATTTGGCGTTTAAAATGCAAATA
Unaligned ( gi|22 ): TCTCTATTAATCTAAATTATAACTTTGGGGCAAAAGTTCAGGAAAAATCCAC
Unaligned ( gi|23 ): TACGGAAGGCCATTGAGGCCAGCACATGGAGAGATATTTTTTATTGCGT
Unaligned ( gi|24 ): ATGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNC
Unaligned ( gi|25 ): ACGGAAGCCCGTTGAGGCCAGGTTATAGAAAGATATTTTTATTGCGTT
Unaligned ( gi|28 ): ACGGAAGCCCATTGAGGCCAGTTTATAGAAGATATTTTTTTT
Unaligned ( gi|29 ): AATTTGCGAATTTTTATAATTATGTTTAAACGTTCAATATT
Unaligned ( gi|30 ): TACGGAAGCCCATTAAGGCCAGTACAAAGAGAGATATTTT
Unaligned ( gi|31 ): ACGGAAGCCCATTAAGGCCAGTACAAAGAGAGATATTTTT
Unaligned ( gi|33 ): CGGAAGCCCATTGAGGCCAGTTTATA
Alignments
lowQualScore : 2222 11 111111 1111111 1111 1 5555555555555555555555 111111 1 11 1111 11 1 111 111 111 1 11 1 11 111111 1111111 222222222 222 111111 111 2222222222 1111111 1111 22222 444444444444444444444444444444444 2222222222222222222 111 11111 444444444444444444444444444 11111 44444 1111111 111 111111111 1111
lowQualScore : 5 5 0000 00 555555 5 8888888 5 5 1 5 5 0000 1 5 1 5 2222222222222222222222 0 0 5 5 5 5 5 5 5 99 6 6 6 6 99 44 2 999999 3 55 2222 33 6 1 2 6 1 5 66 1 000 77 000 1 5 5 000 1 33 5 0 11 5 444444 66 66 5 2 999999 0 5 3 5 1 6666666 5 5 4 4 4 66 777 66 4 777 5 1 222222222 2 4 777 444 666 7 55555 55 1 3 888 3 3 55 1 9999 777777 4 1 222 4 4 3 0000000000 55 7 3 666 3 55 3 1111111 1111 3 3 66666 9999 3 3 555555555555555555555555555555555 666 7777777777777777777 000 44444 8 777 0 4 4 111111111111111111111111111 3 55555 0 55 3 33333 44 666 3 3 3 55 3 3 0000000 888 333333333 8888 2 8 0 55 4 3 44 3333 3 3 1 999 6 888888 1 3 8888 3 3 3 3 3 3 3
lowQualScore : . . .... .. ...... . ....... . . . . . .... . . . . ...................... . . . . . . . . . .. . . . . .. .. . ...... . .. .... .. . . . . . . .. . ... .. ... . . . ... . .. . . .. . ...... .. .. . . ...... . . . . . ....... . . . . . .. ... .. . ... . . ......... . . ... ... ... . ..... .. . . ... . . .. . .... ...... . . ... . . . .......... .. . . ... . .. . ....... .... . . ..... .... . . ................................. ... ................... ... ..... . ... . . . ........................... . ..... . .. . ..... .. ... . . . .. . . ....... ... ......... .... . . . .. . . .. .... . . . ... . ...... . . .... . . . . . . .
lowQualScore : 7 0 0000 77 111111 7 6666666 7 7 0 7 7 1111 4 7 0 7 6666666666666666666666 7 7 7 7 7 7 7 7 7 22 7 7 7 7 22 88 5 222222 3 88 7777 33 7 0 5 7 0 7 77 4 000 99 000 7 7 7 000 4 66 0 0 99 0 444444 99 99 0 5 888888 4 0 1 0 4 2222222 0 0 0 0 4 11 888 11 0 000 0 8 777777777 4 4 888 777 444 3 55555 00 0 6 333 6 6 00 4 4444 000000 0 1 555 0 0 6 9999999999 00 3 6 444 6 66 6 5555555 4444 6 6 66666 1111 6 6 555555555555555555555555555555555 444 2222222222222222222 000 11111 1 000 1 0 4 111111111111111111111111111 4 00000 8 00 6 22222 22 444 6 6 3 00 6 6 0000000 000 666666666 5555 4 0 1 33 4 6 66 8888 3 3 0 222 7 888888 0 1 9999 1 1 1 1 1 1 1
consensus : ATATGAATTAT-TGTTATC----TCAAAC-TGTTGGA-T---GTTAA-AATG-------GACACAAA-CTGA-TGTATT-CTATTT-TTT---AAC-TCGAA-TTNACTTATAAAGAAA-TAGTGTGTTGTGTACGGTAACTTTGCCCGGAGCAACGCATTCGT-C-TTCA-GCCCT-ATATA-TA-ATTT-GTAA--GA-GCTGATTTCAG-T-TGTGAT-T--TCGTATCTGACTTCATTGTT------ACAT-TTGCACG--ACCTG---GTATAGGACTT-GTCGA-ACGTGTACTTCTT-TGGTA-TN-TCCCTCT-AT---TTTTG--T---TTTGTTTT-TA-TT---TTGC-TTTGGT--A-ACAAT-TCAA--CATT-ATG------GAGG--CCTA--GGGCA-ACATTT---ACAATTCG-CTCGT-CTGTGCCC-------TTTTGT-T-AGCGGC-TGCCT-ACCATTTCA-A--T---AT--CGGTAGAC-GACA---TAGAGGTTGTTAAATTCAA------T--TTCT-C---TTA-TGTCTTTC---CTG-CC--A--TCTT--GAACNC-AA--TAC-ACGTAAATGAA-AA--TATCC-T--CA------AAT-TGTATAT---A-A-C-AAC----------T--TA-ATT-CCC---AT-A-CA-ATATN------AAA----TC-A-ATCTC-AGT-TAT-C-AATCAA-AA-TTA----------------C-T------G------CAA---AA--------GAA---C-TA-AC---GT-----GTTATATTTG---TGCCCTTTT-TAGACTA-CC---A-----T-GA--------------AAATGGTTGTTCACAAACTATTTGA--CTTGCCA-AACGGA-CGCTATAAG---AG-CATGT-CTC-TATTC--GGTCT-G-ACTCCAT-C-----TG---ACTT-C----GC-AT----CTGTC-ATAAGATATTTTC-CGA-TT----AC-A-TNA---CATG-ATT------TGTNAG-AT----GTGGCGA-G-T-CAG-AT-C-TG-ATAAATCA
Reference ( family-2261 ) : ATATGAATTAT-TGTTATC----TCAAAC-TGTTGAA-T---GTTAA-AATG-------GACACAAA-CTGA-TNTATT-CTATTT-TTT---AAC-TCGAA-TTNACTTATAAAGAAA-TAGTGTGTTGTGTACGGTAACTTTGCC-GGAGCAACGCATTCGT-C-TTCA-GCCCT-ATATA-TA-ATTT-GTAA--GA-GCTGATTTCAG-T-TGTGAT-T--TCGTATCTGACTTCATTGTT------ACAT-TTGCACG--ACCTG---GTATAGGACTT-GTCGA-ACGTGTACTTCTT-TGGTA-TN-TCCCTCT-AT---TTTTG--T---TTTGTTTT-TA-TT---TTGC-TTTGGT--A-ACAAT-TCAA--CATT-ATG------GAGG--CCTA--GGGCA-ACATTT---ACAACTTG-CTCGT-CTGTGCCC-------TTTTGT-T-AGCGGC-TGCCT-ACCATTTCA-A--T---AT--CGGTAGAC-GACA---TAGAGGTTGTTAAATTCAA------T--TTCT-C---TTA-TGTCTTTC---CTG-CC--A--TCTT--GAACNC-AA--TAC-ACGTAAATGAA-AA--TATCC-T--CA------AAT-TGTATAT---A-A-C-AAC----------T--TA-ATT-CCC---AT-A-CA-ATATN------AAA----TC-A-ATCTC-AGT-TAT-C-AATCAA-AA-TTA----------------C-T------G------CAA---AA--------GAA---C-TA-AC---GT-----GTTATATTTG---TGCCCTTTT-TAGACTA-CC---A-----T-GA--------------AAATGGTTGTTCACAAACTATTTGA--CTTGCCA-AACGGA-C-CTATAAG---AG-CATGT-CTC-TATTC--GGTCT-G-ACTCCAT-C-----TG---ACTT-C----GC-AT----CTNTC-ATAAGATATTTTC-CGA-NT----AC-A-TNA---CATG-ATT------TGTNAG-AT----GTGGCGA-G-T-CAG-AT-C-TG-ATAAATCA
gi|1 : ATATGAATTATGTGT-ATC----TCAAAC-TGTTGA--T---GTTAA-AATG--------ACACAAA-CTGA-TGTATT-CTATTT-TT----AACATGAAA-TTTACTTATAAAGAAAATAGTGTGT-GTGTACAGTAACTTTGCCCGGAGCAACACATCCGTTC-TTCAAGCCCTTATATA-TA-ATTTTGTAA--GA-GCT-ATTTCAG-T-TGTGATCT--TCGTATCTGACTT-ATTGTT------ACATCTTGCACG--ACCGG---ATATAGGACTT--TCGA-ACGTTGACTTCTTGTAGTA-TTGTCCCTCTTAT---TTTTG--T---TT-GTTTT-TA-TT---ATGC-TTTGGT--A-ACAAT-TCAAA-CATT-ATG-------AGG--CCTA--GG-CA-ACATTT---ACAATTCG-CTTGT-CTGT-CCC-------TTTTGT-T-AGCGGC-TGCCT-ACCATTTCA-A--T---AT--CGGTAGAC-GACA---TAGAGCTT--TAAATTCAA------T--T-CT-C---TTA-TGTCTTTC---CTGGTT--A--TCTTTTGAACACCAAGTTAC-ACGTAAATGAA-AA--TATCCCT--CA------AAT-TGTATAT---A-A-CAAAC----------T--TA-ATT--CC---AT-A-CA-ATATT------AAA----TC-A-ATCTC-AGT-TAT-C-AATCAA-AA-TTA----------------C-T------GC-----CAA---AA--------GAA---C-TA-AC---GT-----GTTATATTTG---TGCCCTTTTAGGGACTA-CT---A-----T-GA--------------AAAAGGTTGTTCACAAACTATTTAA--CTTGCCA-AACGGA-CGCTATAAG---AG-CATG--CTT-TATTC--GGTCT-G-ACTCCAT-T-----TGCTTCCTC-C----GC-AT----CTTTCAATAAGATA--TTC-CGA-AT----AC-A-TAA---CATGCATT------TGTAAG-GT----GTGGAGA-G-T-CAG-AT-C-TG-ATAAA
gi|10 : taacgcaatgacattttggcgtttaattcgcaataatatttgcggttaatcgcaatacctttatTTGAACCTTGCCC-AACGGA-----A-AAG---AT-CTTTC-CTC-TATTC--GGTCCAG-ACTCCAT-C-----TG---ACTTTC----AC-AT----CTGTCCATAAGATATT--CACGA-TT----AC-A-TTATCACATC-ATT------TGTTAG-AT----GTGGCGA-A-TCCAGAAT-C-TG-atc
gi|11 : aaatgg-AAA----------T--TG-ATT-CCC---AT-A-AT-ATATG------AAA----TT-A-AGGCC-----TA----AATTAA-AA-TT-----------------T-T------GTTTGTTNNN---NN--------NNN---N-NN-NN---GT-----GTTAT--TTG---TGC----TT-TGCGCTA-CC---T-----T-TC--------------GGCTAGTTTTTC----------TGA--CTTGCCA-GACAGA-----AT-AG---AG-CACGT-CTC-Tacaaacatat
gi|13 : cngTTGA--CTCGACATGACGGA-----ATA-G---AG-CATGT-CTC-TATTC--GATCT-G-AC-CCATGC-----TGA--ACTT---------AT----ATGTC-TTAATGT-TTTCC-CTA-TT----TC-A-CGG---TATG-ATT------TGTCAG-AT----GTG--GA-G-T-CAC-AT-C-TG-ACAtat
gi|14 : aAC----------T--TA-ATT-CCC---AT-A-AA-ATATG------AAA----TT-A-ATCTCTA---TAT-C-AATCAA-AA-TTATTTTGGACCAGAAGTTC-T------G------CAA---AA----------A---G-TC-AC---GT-----CTTAT--TTG---TGCCCTCTT-TAGACTA-CC---A-----ccataatc
gi|15 : TAGAC-GATA---TCGAGGTTGTTAAATTCAA------C--TCCT-C---TTA-TGTTTTTC---CTG-CC--A--TCTT--GAACCC-AA---AT-ACGTAAATGAA-TA--TATCT-A--CA------AAT-TGTATAT---A-A-C-AA
gi|16 : -ACAAT-TCAA--CATT-TTG------AAGG-----A--AGACA-A---TC---ATATTTTA-CTCAT-TTGTGCCC-------CAATGT-T-AGCGGT-TGCCTCATCAT
gi|17 : tcctattttTC-TATTC--GATCG-G-ACTCCAT-C-----TG---ACTT-C--------------------------ATTTTC-CTA-TTT---AC-A-CGG---TATG-ATT------TGTCAG-AT----GTGGCGA-G-T-CAG-AT-G-TG-AAAAATCAcatcattcattgg
gi|18 : ATTTTC-CTA-TTTTACAC-AGTAA---TA-G-ATT------TGTAAG-ATT---ATGGCGA-G-T-CAG-ATCC-TGAACAAATCAtatcg
gi|2 : ttcttgATTTT-TTTTATTGCGTTTAAACATGTTAAA-TTATGTTAA-AATG-------GACACAAA-CTGG-TTTATT-ACATTT-TTC---A-T-TCGGA-TTGACTTATAAAGAAA-TAGTGTATATTGT---TTAACTTTAC----ACCAACACATTCGC-C-TTCA-GCCCT-ATATA-TA-ATTT-GTAA--GA-GCTGATTTTAG-T-TGTGAT-T--TCGCATCTTACTTCATTGTT------ACAT-TTGCACATAATTTG---GTTTATGACTT-GTCGG-ACATGTACTTCTT-TAGTA-TT-TCCCTCC-AG---TTTTG--T---TTTGTTAT-TA-TT---TTGC-TTTGGT--A-ACAAT-TCAA--CATT-ATG------GAGG--CCTA--GGGCA-ACA---------ACTTG-CTAGT-CTGTGCCC-------TTTTGT-T-AGCGGC-TGCCT-ACCATTTCA-A--T---AT--CGGTAGAC-AACA---TAGAGGCTGTTCAATTCAA------C--TCAT-C---TTA-TTTCTTCC---GTG-CC--A--TCTT--GAACCC-AA---AC-ACGTAAATGAA-AA--TATGC-T--CA------AAT---TATAT---A-A-C-AACTTAATTGAAGT--TA-ATT-CCC---AT-A-AA-ATATG------AAA----TC-A-ATCTC-GGG-TAT-T-AATCAA-AA-TTA----------------C-T------G------CAAAACAA--------AAA---C--A-AC---GT-----GTTATATTTG---TGTCCTTTT-AAGGCTA-CC---ATTTT-T-TA--------------AAATGGTTG-----AAACTATCTAA--CTTGCCA-AACGGACC-CTATAAG---AG-TATGT-CTT-TATTC--AGTCT-G-ACTCCAT-T-----TG---ACTT-C----GC-AT----CTGTC-ATAAGATA--TTC-CGA-TT----AC-A-TCA---CATA-ATTTGTAAATGTAAG-AT----GTGGCGA-G-T-CAG-AT-T-TG-ATAAATCAtatcgtgtaa
gi|20 : tacggaagcccattgaggccagtttaaagaaagatTC---CTG-CC--A--TTTT--GAATTC-AA------ACGTAAATCAG-AG--TGTCC-ta
gi|26 : C-TGCCT-ACCATTTGA-A--T---AT--TCGTAGAA-GACA---TAGAAGTTGTTAAcacccatatttcccaacatc
gi|27 : GGT-TGCCT-ACCATTTCA-A--T---AT--CCGTAGCA-GACA---CAGAGGTTG
gi|3 : GAATTAT-TGT-ATCAC--TCAAAC--GTTGAAGT---GTTAA-AATG-------GACA-AAA-CTGA-TTTATT-TTATTT-TTTTGTAAC-TCGAAATTGACTTAAAAAGAAA-TAGTGTGT-----ATGG---------C-G----AACGTATTC--------A-GCC-T-ATATAATA-ATTT-GTAATGAA-GCTGATTTCAGAT-TGTGTT-TATTCGT-------TACATTGCTCGTATCATAT-CTA-ACGG-ACCTGTATGTAAAGGACTT--TCGACAC-TATTGTTATT-TGATT-TA-TC------AT---TTTTGACT---TTAGTTTT-TA-TT---GTG---TTGGTGAA-ACAAT-TCAA--CATTTATG------GAGGTTCCTATGGGGCATACATTTTTTACAACTTG-CTTGT-CTGTA-CC-------TTTTGTAT-AGC-GC-TGTCT-ATTAATTTA-AAGT---AC--AGGTAAAC-----------------TTCAATGCAATCATACT--TTCT-A---TTA---TCT------CTG-CCAAA--CCTT--GAACAC--G--TAC-ACGTAAATGAA-AA--AATCTAT--CA------AGT-TG-ATTT---A-A-C-AAC----------T--TATATTGTGC---ATAA-CA-ATATA------AAA----TC--------------------ATCAA-AACTTA----------------C-TTC----G------CAA---AA--------GAA---CGTAGACTTAGTCCCACGTCGTATTTAGATTGAGCCTTA-TAGACTA--T---A-----TAGT--------------CAATAAGTG-TGACATACT-TTTAA--CTTGCAA-AAC-GA-CGCTATAAGTAAAGACATGTACTT-TATTCGTGGTCT-GAACTTCAT-CGTAATTGAACACTC-TGTGAGC-ATAAAAGTCTC-ATAGAAGATTATT-CGA-ATA---ACAA-TCA---CATGAATT------TGTAAGTGT----GTGGAGAGG-T-TAG-AT-A-TG-ATAc
gi|32 : T----GTGGCGA-G-T-CAG-AT-C-TG-ACAAATCAtaacata
gi|32 : T----GC-A-TGA---TATG-ATT------TGTCAG-AT----CTGACtatcatgcaaat
gi|4 : tgtggcgaATATGAATTAT-TGTTATC----TCAAAC-TGTTGGA-T---GTTAA-AATG-------GACACAAA-CTGA-TGTATT-CTATTT-TTT---AAC-TCGAA-TTTACTTATAAAGAAA-TAGTGTGTTGTGTACAGTAACTTTGCCCGGAGCAACACATTCGT-C-TTCA-GCCCT-ATATA-TA-ATTT-GTAA--GA-GCTGATTTCAG-T-TGTGAT-T--TCGTATCTGACTTCATTGTT------ACAT-TTGCACG--ACCTG---GTATAGGACTT-GTCGA-ACGTGTACTTCTT-TAGTA-TG-TCCCTCT-AT---TTTTG--T---TTTGTTTT-TA-TT---TTGC-TTTGGT--A-ACAAT-TCAA--CATT-ATG------GAGG--CCTA--GGGCA-ACATTT---ACAATTCG-CTTGT-CTGTGCCC-------TTTTGT-T-AGCGGC-TGCCT-ACCATTTCA-A--T---AT--CGGTAGAC-GACA---TAGAGCTTGTTAAATTCAA------T--TTCT-C---TTA-TGTCTTTC---CTG-TT--A--TCTT--GAACAC-AAGTTAC-ACGTAAATGAA-AA--TATCC-T--CA------AAT-TGTATAT---A-A-C-AAC----------T--TA-ATT-CCC---AT-A-CA-ATATT------AAA----TC-A-ATCTC-AGT-TAT-C-AATCAA-AA-TTA----------------C-T------G------CAA---AA--------GAA---C-TA-AC---GT-----GTTATATTTG---TGCCCTTTT-TAGACTA-CT---A-----T-GA--------------AAATGGTTGTTCACAAACTATTTAA--CTTGCCA-AACGGA-CGCTATAAG---AG-CATGT-CTT-TATTC--GGTCT-G-ACTCCAT-T-----TG---ACTT-C----GC-AT----CTTTC-ATAAGATATTTTC-CGA-AT----AC-A-TAA---CA-G-ATT------TGTAAG-GT----GTGGAGA-G-T-CAG-AT-C-TG-ATAAATCAaat
gi|5 : ATATGAATTAT-TGTTATC----TCAAAC-TGTTGGA-T---GTTAA-AATG-------G-CACAAAACTGA-TGTATT-CTATTT-TTT---AAC-TCGAA-TTTACTTATAAAGAAA-TAGTGTGTTGTGTACAGTAACTTTGCCCGGAGCAA-ACATTCGT-C-TTCA-GCCCT-ATATA-TA-ATTT-GTAA--GA-G-TGATTTCAG-T-TGTGAT-T--TCGTATCTGACTTCATTGTT------ACAT-TTGCACG--ACCTG---GTATAGGACTT-GTCGA-ACGTGTACTTCTT-TG-TA-TG-TCCCTCT-AT---TTTGT--T---TTTGTTTT--A-TT---TTGC-TTTGGT--A-ACAAT-TCAA--CATT-ATG------GAGG--CCTA--GGGCA-ACATTT---ACAATTCG-CTTGT-CTGTGCCC-------TTTTGT-T-AGCG-C-TGCCT-ACCATTTCA-A--T---AT--CGGTAGAC-GACA---TAGAGCTTGTTAAATTCAA------T--TTCT-C---TTA-TGTCTTTC---CTG-TT--A--TCTT--GAACAC-AAGTTAC-ACGTAAATGAA-AA--TATCC-T--CA------AAT-TGTATAT---A-A-C-AAC----------T--TA-ATT-CCC---AT-A-CA-ATATT------AAA----TC-A-ATCTC-AGT-TAT-C-AATCAA-AA-TTA----------------C-T------G------CAA---AA--------GAA---C-TA-AC---GT-----GTTATATTTG---TGCCCTTTT-TAGACTA-CT---A-----T-GA--------------AAATGGTTGTTCACAAACTATTTAA--CTTGCCA-AACGGA-CGCTATAAG---AG-CATGT-CTT-TATTC--GGTCT-G-ACTCCAT-T-----TG---ACTT-C----GC-AT----CTTTC-ATAAGATA--TTC-CGA-AT----AC-A-TAA---CATG-ATT------TGTAAG-GT----GTGGAGA-G-T-CAG-AT-C-TG-ATAAATCA
gi|6 : ATATACATTAT-TCTTGTG----TCCAA--TACTGGA-T---GTTGATAATGTGGACCTGAC-CACA-CTGA-TCTATT-CTATTA-TTT---CAC-TCGAA-TTAACTTAAGATGAAA-TAGTGTGTTGT------TAGCTTGGC----ACCAAAGGATTCGT-CATTTA--CACT-GTATG-TA-ATTT-GT
gi|6 : -TC-TCCCTTT-ATGTGTTTTG--TATGTTTCTTTTATAATTAAATTACATTTGTTT-A-ACAGTATCAAAACATT-ACGAGAGATGAAA--C--A--GAGCA-A-ACTT---ACA-TTTG-CTCGT-CTCTCTCCGACGCTATTTTG----AGCGTA-TATCT-AT--------A--T---ATTCCGTTAGATAGACA---TA-AG--TGTTA--TTCTA------T--TTTT-CATATTA-TCTCTTTTTTTCTT-CC------CTT--GCTCCC-TC--T-C-TGGCGAACCAACAACCTACCC-C--CACAAAAAAAT-CGTTTATTA-ATA-C-GAC----------T--TTTATT-CCCCATAT-A-TA-ATATATCATGCAAAC---TC-ACATCTCTA---TAT-CTAATCAA-A--TTG----------------C-TATGGAAG------CAA---AATTTCTGAAAAA---T-CC-AC---GT-----GTTAT-TTTG---TGTCCTATT-CAGATTA-TC---ACCTTCT-GA--------------CC-TGGTTTTTCA--AA-TGGTTGA--CGGG--A-AAGAGA-------------AG-CATGT-CTCATAT-----ATAT-A-AT----T-C-----TA---ACTC-C----AT-AT----C-GTC-ATATG--ATTTTC-CGA-TT----AT-A-TCGT--CATG-GTT------TGTCAG-AT----GTGGCGA-GTT-CAG-AT-C-TG-gtccgaatctgcctgctactagcacatagaggtatttttctccctttatgtgttttgtatgtttcttttataattaaattacatttgtttaacagtatcaaaacattacgagagatgaaacagagcaaacttacatttgctcgtctctctccgacgctattttgagcgtatatctatatattccgttagatagacataagtgttattctatttttcatattatctctttttttcttcccttgctccctctctggcgaaccaacaacctacccccacaaaaaaatcgtttattaatacgacttttattccccatatataatatatcatgcaaactcacatctctatatctaatcaaattgctatggaagcaaaatttctgaaaaatccacgtgttattttgtgtcctattcagattatcaccttctgacctggtttttcaaatggttgacgggaaagagaagcatgtctcatatatataattctaactccatatcgtcatatgattttccgattatatcgtcatggtttgtcagatgtggcgagttcagatctgac
gi|7 : atatacattattcttgtgtccaatactggatgttgataatgtggacctgaccacactgatctattctattatttcactcgaattaacttaagatgaaatagtgtgttgttagcttggcaccaaaggattcgtcatttacactgtatgtaatttgtgtccgaatctgcctgctactagcacatagaggtattttTATAAATTAT-TGTTA-C----T--GAC--GTTGA-------TTAA-A-TG-------GACACAAA-CTGACTGTATTGCTATTTGTTT---AACGTCGAA-T-GACTTATAAGAAAT-TAGTTGGTTG---------------------GCAACGAATTCGT-C-TTCA-AGCCT-ATG-A-TAGATTT---AA--GAAGCTGATTTCAG-TGTGTGAT-T--TCG-----GCC------GTT------ACGTATTGCATC--AGCTG----TATAG-ACTTCGTCGC-ACG-GTACTT-TA-CGGTAGTT-TCCCTCTGAT---TT--G--T---TTTTTTTT-TA-TT---TTGCATTTGGT--ATACAATGTCAA--CATT-ATG------GAGG--CCTA--GGGCA-ACA--T---ACAACTTGTCTTGTGCTGTGCCC-------TTTTGT-TAAGCGGCTTGTCT-A-CATTTCAGA--TGCGAT--CGGTAGAC-GACAAGCTAGAGGTTGTT--ATTCAAAAGC--TCGTGCTGC---TTATTGTCGTTC---CTGTCT--AACTCTT--GAACAC-AA--TACGACGTAATCGAA-AA---AT-C-T--CA------AA--TGTATAT---A-ACC-AATCG--------T--TG-ATT-CC-----T-A-TA-AGATC------AGAATATTCAA-ATATC-AGT-TATCC-AATCAATAA-TTA------------------T------G------CAA---AA--------GAA---C--A-ACG--GTGG---GTTA---TTG---TGCCCTTTT-TAGACc
gi|8 : tttagTC---CTG-TC--A--TCTT--GAACTC-AA------ATGTAAATCAG-AA--CGTCC-CGCCA------A-----TATTTCCCA-A-C-ATC----------TATTA-A---CCT---AT-AACATATATA------AAA----TT-A-ATCT----T-TG----AAGCAA-AA-GT-------------------T------G------GAG---AA--------AAA---T-CC-AC---GT-----GTTATAT--G---TGCTGTATT-TAGATTAACCTTTA-----T-GACCTTTTTTTTTTTTAATTAGTTA-----AAACCATCAGA--CTTGACA-GACAGA-----ATA-G---AG-AATTT-CTC-TATTC--GATCT-G-ACTCCAT-C-----TG---ACTT-C----ATGAT----CTGTC-TTATG--ATTTTC-CTATTT----AC-A-CGG---TATG-ATT------TGTCAG-ATGCACGTTGCGA-G-T-CAG-AT-CGTG--TAAAac
gi|9 : ------T--TTCT-C----------CTTTC---CTG-CC--A--TTTT--TAACTC-AA---AC-ACATGAATGGA-AA--TGT-C-T--CACC----AATATTTAT-C---A-A-C-ATC----------T--TA-ATT-CTC-----------ATATC------AAT----TT-A-ATCTC---TATAT-T-AATCTA-AA-TTA----------------CGTTGGA--G------CAA---AAATTAGGG-GAAAATC-T--AC---GT-----GTTAT
gi|9 : tcaacaaccttttGTTATTTA--AACCATCTGA--CTTGCCA-GACGGA-----AT-AG---AT-TATAT-CTC-TATTC--GATCT-T-ACTTTAT-T-----Tttaaaccatctgacttgccagacggaatagattatatctctattcgatcttactttatttctgtcgtgtaaaatgtggcgagtcagatctcataa
gi|9 : tcaacaacctttttttctcctttcctgccatttttaactcaaacacatgaatggaaatgtctcaccaatatttatcaacatcttaattctcatatcaatttaatctctatattaatctaaattacgttggagcaaaaattaggggaaaatctacgt------TGTAAA-AT----GTGGCGA-G-T-CAG-AT-C-TC-ATAActgtcgtgtaaaatgtggcgagtcagatctcataa
12 sequences could not be aligned to this reference sequence:
Unaligned ( gi|12 ): CCCTGCTATTTTGAGCTCAGATATGAATCAAAATTTTCTCAACATCCTCATAACCATAATAGGTGTACATCAAATTACACTCTGCATTCTTTGAAGGAAACGTTTGGGGGAAAATCCACGTGTTTTTGTGCTGT
Unaligned ( gi|19 ): CTACGGAAGCACCATTGAGCCAGTTTATAGAAAGATATTTTTTTTATTGGTTTAAACGCATTAA
Unaligned ( gi|21 ): TTAACGCAATAATGTGCGTTTAATCCAATGAATTTGGCGTTTAAAATGCAAATA
Unaligned ( gi|22 ): TCTCTATTAATCTAAATTATAACTTTGGGGCAAAAGTTCAGGAAAAATCCAC
Unaligned ( gi|23 ): TACGGAAGGCCATTGAGGCCAGCACATGGAGAGATATTTTTTATTGCGT
Unaligned ( gi|24 ): ATGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNC
Unaligned ( gi|25 ): ACGGAAGCCCGTTGAGGCCAGGTTATAGAAAGATATTTTTATTGCGTT
Unaligned ( gi|28 ): ACGGAAGCCCATTGAGGCCAGTTTATAGAAGATATTTTTTTT
Unaligned ( gi|29 ): AATTTGCGAATTTTTATAATTATGTTTAAACGTTCAATATT
Unaligned ( gi|30 ): TACGGAAGCCCATTAAGGCCAGTACAAAGAGAGATATTTT
Unaligned ( gi|31 ): ACGGAAGCCCATTAAGGCCAGTACAAAGAGAGATATTTTT
Unaligned ( gi|33 ): CGGAAGCCCATTGAGGCCAGTTTATA
Alignments
lowQualScore : 2222 11 1111111 1111111 1111 1 333333333333333333333333 111111 1 11 1111 11 1 111 111 111 1 11 1 11 111111 1111111 222222222 222 111111 111 2222222222 1111111 1111 22222 444444444444444444444444444444444 2222222222222222222 111 11111 444444444444444444444444444 11111 3333 111 22222222222222 1111111
lowQualScore : 5 5 0000 00 2222222 5 8888888 5 5 0 5 5 0000 1 5 1 5 888888888888888888888888 0 5 5 5 5 5 5 5 99 6 6 6 6 99 44 2 999999 3 55 2222 33 6 1 2 6 1 5 66 1 000 77 000 1 5 5 000 1 33 5 0 11 5 444444 66 66 5 2 999999 0 5 3 5 1 6666666 5 5 4 4 4 66 777 66 4 777 5 1 222222222 2 4 777 444 666 7 55555 55 1 3 888 3 3 55 1 9999 777777 4 1 222 4 4 3 0000000000 55 7 3 666 3 55 3 1111111 1111 3 3 66666 9999 3 3 555555555555555555555555555555555 666 7777777777777777777 000 44444 8 777 0 4 4 111111111111111111111111111 3 55555 0 55 3 0000 44 666 3 3 3 55 3 3 3 3 000 88888 3 11111111111111 7 0 999999999999 3 3 9999 3 3 1 888 6 888888 0000000 1 3 8888 3 3 3 3 3 3 3
lowQualScore : . . .... .. ....... . ....... . . . . . .... . . . . ........................ . . . . . . . . .. . . . . .. .. . ...... . .. .... .. . . . . . . .. . ... .. ... . . . ... . .. . . .. . ...... .. .. . . ...... . . . . . ....... . . . . . .. ... .. . ... . . ......... . . ... ... ... . ..... .. . . ... . . .. . .... ...... . . ... . . . .......... .. . . ... . .. . ....... .... . . ..... .... . . ................................. ... ................... ... ..... . ... . . . ........................... . ..... . .. . .... .. ... . . . .. . . . . ... ..... . .............. . . ............ . . .... . . . ... . ...... ....... . . .... . . . . . . .
lowQualScore : 7 0 0000 77 1111111 7 6666666 7 7 7 7 7 1111 4 7 0 7 000000000000000000000000 7 7 7 7 7 7 7 7 22 7 7 7 7 22 88 5 222222 3 88 7777 33 7 0 5 7 0 7 77 4 000 99 000 7 7 7 000 4 66 0 0 99 0 444444 99 99 0 5 888888 4 0 1 0 4 2222222 0 0 0 0 4 11 888 11 0 000 0 8 777777777 4 4 888 777 444 3 55555 00 0 6 333 6 6 00 4 4444 000000 0 1 555 0 0 6 9999999999 00 3 6 444 6 66 6 5555555 4444 6 6 66666 1111 6 6 555555555555555555555555555555555 444 2222222222222222222 000 11111 1 000 1 0 4 111111111111111111111111111 4 00000 8 00 6 9999 22 444 6 6 3 00 6 6 3 3 000 77777 6 44444444444444 3 6 000000000000 3 1 6666 1 1 0 555 2 888888 0000000 0 1 9999 1 1 1 1 1 1 1
consensus : ATATGAATTAT-TGTTATC----TCAAAC-TGTTGGA-T---GTTAA-AATG-------GACACAAA-CTGA-TGTATT-CTATTT-TTT---AAC-TCGAA-TTNACTTATAAAGAAA-TAGTGTGTTGTGTACGGTAACTTTGCCCGGAGCAACGCATTCGT-C-TTCA-GCCCT-ATATA-TA-ATTT-GTAA--GA-GCTGATTTCAG-T-TGTGAT-T--TCGTATCTGACTTCATTGTT------ACAT-TTGCACG--ACCTG---GTATAGGACTT-GTCGA-ACGTGTACTTCTT-TGGTA-TN-TCCCTCT-AT---TTTTG--T---TTTGTTTT-TA-TT---TTGC-TTTGGT--A-ACAAT-TCAA--CATT-ATG------GAGG--CCTA--GGGCA-ACATTT---ACAATTCG-CTCGT-CTGTGCCC-------TTTTGT-T-AGCGGC-TGCCT-ACCATTTCA-A--T---AT--CGGTAGAC-GACA---TAGAGGTTGTTAAATTCAA------T--TTCT-C---TTA-TGTCTTTC---CTG-CC--A--TCTT--GAACNC-AA--TAC-ACGTAAATGAA-AA--TATCC-T--CA------AAT-TGTATAT---A-A-C-AAC----------T--TA-ATT-CCC---AT-A-CA-ATATN------AAA----TC-A-ATCTC-AGT-TAT-C-AATCAA-AA-TTA----------------C-T------G------CAA---AA--------GAA---C-TA-AC---GT-----GTTATATTTG---TGCCCTTTT-TAGACTA-CC---A-----T-GA--------------AAATGGTTGTTCACAAACTATTTGA--CTTGCCA-AACGGACGCTATAAG---AG-CATGT-CTC-TATTC--GGTCT-G-ACTCCAT-C-TG---ACTT-CGC-A-TCTG--------------TC-ATAAG--ATATT-T---TC-CGA-TT----AC-A-TNA---CATG-ATT------T-------GTNAG-AT----GTGGCGA-G-T-CAG-AT-C-TG-ATAAATCA
Reference ( family-2261 ) : ATATGAATTAT-TGTTATC----TCAAAC-TGTTGGA-T---GTTAA-AATG-------GACACAAA-CTGA-TGTATT-CTATTT-TTT---AAC-TCGAA-TTNACTTATAAAGAAA-TAGTGTGTTGTGTACGGTAACTTTGCCCGGAGCAACGCATTCGT-C-TTCA-GCCCT-ATATA-TA-ATTT-GTAA--GA-GCTGATTTCAG-T-TGTGAT-T--TCGTATCTGACTTCATTGTT------ACAT-TTGCACG--ACCTG---GTATAGGACTT-GTCGA-ACGTGTACTTCTT-TGGTA-TN-TCCCTCT-AT---TTTTG--T---TTTGTTTT-TA-TT---TTGC-TTTGGT--A-ACAAT-TCAA--CATT-ATG------GAGG--CCTA--GGGCA-ACATTT---ACAATTCG-CTCGT-CTGTGCCC-------TTTTGT-T-AGCGGC-TGCCT-ACCATTTCA-A--T---AT--CGGTAGAC-GACA---TAGAGGTTGTTAAATTCAA------T--TTCT-C---TTA-TGTCTTTC---CTG-CC--A--TCTT--GAACNC-AA--TAC-ACGTAAATGAA-AA--TATCC-T--CA------AAT-TGTATAT---A-A-C-AAC----------T--TA-ATT-CCC---AT-A-CA-ATATN------AAA----TC-A-ATCTC-AGT-TAT-C-AATCAA-AA-TTA----------------C-T------G------CAA---AA--------GAA---C-TA-AC---GT-----GTTATATTTG---TGCCCTTTT-TAGACTA-CC---A-----T-GA--------------AAATGGTTGTTCACAAACTATTTGA--CTTGCCA-AACGGACGCTATAAG---AG-CATGT-CTC-TATTC--GGTCT-G-ACTCCAT-C-TG---ACTT-CGC-A-TCTG--------------TC-ATAAG--ATATT-T---TC-CGA-TT----AC-A-TNA---CATG-ATT------T-------GTNAG-AT----GTGGCGA-G-T-CAG-AT-C-TG-ATAAATCA
gi|1 : ATATGAATTATGTGT-ATC----TCAAAC-TGTTG-A-T---GTTAA-AATG--------ACACAAA-CTGA-TGTATT-CTATTT-TT----AACATGAAA-TTTACTTATAAAGAAAATAGTGTGT-GTGTACAGTAACTTTGCCCGGAGCAACACATCCGTTC-TTCAAGCCCTTATATA-TA-ATTTTGTAA--GA-GCT-ATTTCAG-T-TGTGATCT--TCGTATCTGACTT-ATTGTT------ACATCTTGCACG--ACCGG---ATATAGGACTT--TCGA-ACGTTGACTTCTTGTAGTA-TTGTCCCTCTTAT---TTTTG--T---TT-GTTTT-TA-TT---ATGC-TTTGGT--A-ACAAT-TCAAA-CATT-ATG-------AGG--CCTA--GG-CA-ACATTT---ACAATTCG-CTTGT-CTGT-CCC-------TTTTGT-T-AGCGGC-TGCCT-ACCATTTCA-A--T---AT--CGGTAGAC-GACA---TAGAGCTT--TAAATTCAA------T--T-CT-C---TTA-TGTCTTTC---CTGGTT--A--TCTTTTGAACACCAAGTTAC-ACGTAAATGAA-AA--TATCCCT--CA------AAT-TGTATAT---A-A-CAAAC----------T--TA-ATT--CC---AT-A-CA-ATATT------AAA----TC-A-ATCTC-AGT-TAT-C-AATCAA-AA-TTA----------------C-T------GC-----CAA---AA--------GAA---C-TA-AC---GT-----GTTATATTTG---TGCCCTTTTAGGGACTA-CT---A-----T-GA--------------AAAAGGTTGTTCACAAACTATTTAA--CTTGCCA-AACGGACGCTATAAG---AG-CATG--CTT-TATTC--GGTCT-G-ACTCCAT-T-TGCTTCCTC-CGC-A-TCTT--------------TCAATAAG--ATA---T---TC-CGA-AT----AC-A-TAA---CATGCATT------T-------GTAAG-GT----GTGGAGA-G-T-CAG-AT-C-TG-ATAAA
gi|10 : taacgcaatgacattttggcgtttaattcgcaataatatttgcggttaatcgcaatacctttatTTGAACCTTGCCC-AACGGA----A-AAG---AT-CTTTC-CTC-TATTC--GGTCCAG-ACTCCAT-C-TG---ACTTTCAC-A-TCTG--------------TCCATAAG--ATATT------CACGA-TT----AC-A-TTATCACATC-ATT------T-------GTTAG-AT----GTGGCGA-A-TCCAGAAT-C-TG-atc
gi|11 : aaatgg-AAA----------T--TG-ATT-CCC---AT-A-AT-ATATG------AAA----TT-A-AGGCC-----TA----AATTAA-AA-TT-----------------T-T------GTTTGTTNNN---NN--------NNN---N-NN-NN---GT-----GTTAT--TTG---TGC----TT-TGCGCTA-CC---T-----T-TC--------------GGCTAGTTTTTC----------TGA--CTTGCCA-GACAGA----AT-AG---AG-CACGT-CTC-Tacaaacatat
gi|13 : cngTTGA--CTCGACATGACGGA----ATA-G---AG-CATGT-CTC-TATTC--GATCT-G-AC-CCATGC-TGA--ACTT-----A-TATG--------------TC-TTAAT--GT-TT-T---CC-CTA-TT----TC-A-CGG---TATG-ATT------T-------GTCAG-AT----GTG--GA-G-T-CAC-AT-C-TG-ACAtat
gi|14 : aAC----------T--TA-ATT-CCC---AT-A-AA-ATATG------AAA----TT-A-ATCTCTA---TAT-C-AATCAA-AA-TTATTTTGGACCAGAAGTTC-T------G------CAA---AA----------A---G-TC-AC---GT-----CTTAT--TTG---TGCCCTCTT-TAGACTA-CC---A-----ccataatc
gi|15 : TAGAC-GATA---TCGAGGTTGTTAAATTCAA------C--TCCT-C---TTA-TGTTTTTC---CTG-CC--A--TCTT--GAACCC-AA---AT-ACGTAAATGAA-TA--TATCT-A--CA------AAT-TGTATAT---A-A-C-AA
gi|16 : -ACAAT-TCAA--CATT-TTG------AAGG-----A--AGACA-A---TC---ATATTTTA-CTCAT-TTGTGCCC-------CAATGT-T-AGCGGT-TGCCTCATCAT
gi|17 : tcctattttTC-TATTC--GATCG-G-ACTCCAT-C-TG---ACTT-C-----------------------------------ATT-T---TC-CTA-TTT---AC-A-CGG---TATG-ATT------T-------GTCAG-AT----GTGGCGA-G-T-CAG-AT-G-TG-AAAAATCAcatcattcattgg
gi|18 : ATT-T---TC-CTA-TTTTACAC-AGTAA---TA-G-ATT------T-------GTAAG-ATT---ATGGCGA-G-T-CAG-ATCC-TGAACAAATCAtatcg
gi|2 : ttcttgATTTT-TTTTATTGCGTTTAAACATGTTAAA-TTATGTTAA-AATG-------GACACAAA-CTGG-TTTATT-ACATTT-TTC---A-T-TCGGA-TTGACTTATAAAGAAA-TAGTGTATATTGT---TTAACTTTACAC----CAACACATTCGC-C-TTCA-GCCCT-ATATA-TA-ATTT-GTAA--GA-GCTGATTTTAG-T-TGTGAT-T--TCGCATCTTACTTCATTGTT------ACAT-TTGCACATAATTTG---GTTTATGACTT-GTCGG-ACATGTACTTCTT-TAGTA-TT-TCCCTCC-AG---TTTTG--T---TTTGTTAT-TA-TT---TTGC-TTTGGT--A-ACAAT-TCAA--CATT-ATG------GAGG--CCTA--GGGCA-ACA---------ACTTG-CTAGT-CTGTGCCC-------TTTTGT-T-AGCGGC-TGCCT-ACCATTTCA-A--T---AT--CGGTAGAC-AACA---TAGAGGCTGTTCAATTCAA------C--TCAT-C---TTA-TTTCTTCC---GTG-CC--A--TCTT--GAACCC-AA---AC-ACGTAAATGAA-AA--TATGC-T--CA------AAT---TATAT---A-A-C-AACTTAATTGAAGT--TA-ATT-CCC---AT-A-AA-ATATG------AAA----TC-A-ATCTC-GGG-TAT-T-AATCAA-AA-TTA----------------C-T------G------CAAAACAA--------AAA---C--A-AC---GT-----GTTATATTTG---TGTCCTTTT-AAGGCTA-CC---ATTTT-T-TA--------------AAATGGTTG-----AAACTATCTAA--CTTGCCA-AACGGACCCTATAAG---AG-TATGT-CTT-TATTC--AGTCT-G-ACTCCAT-T-TG---ACTT-CGC-A-TCTG--------------TC-ATAAG--ATA---T---TC-CGA-TT----AC-A-TCA---CATA-ATTTGTAAAT-------GTAAG-AT----GTGGCGA-G-T-CAG-AT-T-TG-ATAAATCAtatcgtgtaa
gi|20 : tacggaagcccattgaggccagtttaaagaaagatTC---CTG-CC--A--TTTT--GAATTC-AA------ACGTAAATCAG-AG--TGTCC-ta
gi|26 : C-TGCCT-ACCATTTGA-A--T---AT--TCGTAGAA-GACA---TAGAAGTTGTTAAcacccatatttcccaacatc
gi|27 : GGT-TGCCT-ACCATTTCA-A--T---AT--CCGTAGCA-GACA---CAGAGGTTG
gi|3 : GAATTAT-TGT-ATCAC--TCAAAC--GTTGAAGT---GTTAA-AATG-------GACA-AAA-CTGA-TTTATT-TTATTT-TTTTGTAAC-TCGAAATTGACTTAAAAAGAAA-TAGTGTGT-----ATGG----------CG----AACGTATTC--------A-GCC-T-ATATAATA-ATTT-GTAATGAA-GCTGATTTCAGAT-TGTGTT-TATTCGT-------TACATTGCTCGTATCATAT-CTA-ACGG-ACCTGTATGTAAAGGACTT--TCGACAC-TATTGTTATT-TGATT-TA-TC------AT---TTTTGACT---TTAGTTTT-TA-TT---GTG---TTGGTGAA-ACAAT-TCAA--CATTTATG------GAGGTTCCTATGGGGCATACATTTTTTACAACTTG-CTTGT-CTGTA-CC-------TTTTGTAT-AGC-GC-TGTCT-ATTAATTTA-AAGT---AC--AGGTAAAC-----------------TTCAATGCAATCATACT--TTCT-A---TTA---TCT------CTG-CCAAA--CCTT--GAACAC--G--TAC-ACGTAAATGAA-AA--AATCTAT--CA------AGT-TG-ATTT---A-A-C-AAC----------T--TATATTGTGC---ATAA-CA-ATATA------AAA----TC--------------------ATCAA-AACTTA----------------C-TTC----G------CAA---AA--------GAA---CGTAGACTTAGTCCCACGTCGTATTTAGATTGAGCCTTA-TAGACTA--T---A-----TAGT--------------CAATAAGTG-TGACATACT-TTTAA--CTTGCAA-AAC-GACGCTATAAGTAAAGACATGTACTT-TATTCGTGGTCT-GAACTTCAT-CGTA---ATTG-AAC-ACTCTGTGAGCATAAAAGTCTC-ATAGA--AGATTAT---TC-GAA-TA----ACAA-TCA---CATGAATT------T-------GTAAGTGT----GTGGAGAGG-T-TAG-AT-A-TG-ATAc
gi|32 : T----GTGGCGA-G-T-CAG-AT-C-TG-ACAAATCAtaacata
gi|32 : -TT----GC-A-TGA---TATG-ATT------T-------GTCAG-AT----CTGACtatcatgcaaat
gi|4 : tgtggcgaATATGAATTAT-TGTTATC----TCAAAC-TGTTGGA-T---GTTAA-AATG-------GACACAAA-CTGA-TGTATT-CTATTT-TTT---AAC-TCGAA-TTTACTTATAAAGAAA-TAGTGTGTTGTGTACAGTAACTTTGCCCGGAGCAACACATTCGT-C-TTCA-GCCCT-ATATA-TA-ATTT-GTAA--GA-GCTGATTTCAG-T-TGTGAT-T--TCGTATCTGACTTCATTGTT------ACAT-TTGCACG--ACCTG---GTATAGGACTT-GTCGA-ACGTGTACTTCTT-TAGTA-TG-TCCCTCT-AT---TTTTG--T---TTTGTTTT-TA-TT---TTGC-TTTGGT--A-ACAAT-TCAA--CATT-ATG------GAGG--CCTA--GGGCA-ACATTT---ACAATTCG-CTTGT-CTGTGCCC-------TTTTGT-T-AGCGGC-TGCCT-ACCATTTCA-A--T---AT--CGGTAGAC-GACA---TAGAGCTTGTTAAATTCAA------T--TTCT-C---TTA-TGTCTTTC---CTG-TT--A--TCTT--GAACAC-AAGTTAC-ACGTAAATGAA-AA--TATCC-T--CA------AAT-TGTATAT---A-A-C-AAC----------T--TA-ATT-CCC---AT-A-CA-ATATT------AAA----TC-A-ATCTC-AGT-TAT-C-AATCAA-AA-TTA----------------C-T------G------CAA---AA--------GAA---C-TA-AC---GT-----GTTATATTTG---TGCCCTTTT-TAGACTA-CT---A-----T-GA--------------AAATGGTTGTTCACAAACTATTTAA--CTTGCCA-AACGGACGCTATAAG---AG-CATGT-CTT-TATTC--GGTCT-G-ACTCCAT-T-TG---ACTT-CGC-A-TCTT--------------TC-ATAAG--ATATT-T---TC-CGA-AT----AC-A-TAA---CA-G-ATT------T-------GTAAG-GT----GTGGAGA-G-T-CAG-AT-C-TG-ATAAATCAat
gi|5 : ATATGAATTAT-TGTTATC----TCAAAC-TGTTGGA-T---GTTAA-AATG-------G-CACAAAACTGA-TGTATT-CTATTT-TTT---AAC-TCGAA-TTTACTTATAAAGAAA-TAGTGTGTTGTGTACAGTAACTTTGCCCGGAGCAA-ACATTCGT-C-TTCA-GCCCT-ATATA-TA-ATTT-GTAA--GA-G-TGATTTCAG-T-TGTGAT-T--TCGTATCTGACTTCATTGTT------ACAT-TTGCACG--ACCTG---GTATAGGACTT-GTCGA-ACGTGTACTTCTT-TG-TA-TG-TCCCTCT-AT---TTTGT--T---TTTGTTTT--A-TT---TTGC-TTTGGT--A-ACAAT-TCAA--CATT-ATG------GAGG--CCTA--GGGCA-ACATTT---ACAATTCG-CTTGT-CTGTGCCC-------TTTTGT-T-AGCG-C-TGCCT-ACCATTTCA-A--T---AT--CGGTAGAC-GACA---TAGAGCTTGTTAAATTCAA------T--TTCT-C---TTA-TGTCTTTC---CTG-TT--A--TCTT--GAACAC-AAGTTAC-ACGTAAATGAA-AA--TATCC-T--CA------AAT-TGTATAT---A-A-C-AAC----------T--TA-ATT-CCC---AT-A-CA-ATATT------AAA----TC-A-ATCTC-AGT-TAT-C-AATCAA-AA-TTA----------------C-T------G------CAA---AA--------GAA---C-TA-AC---GT-----GTTATATTTG---TGCCCTTTT-TAGACTA-CT---A-----T-GA--------------AAATGGTTGTTCACAAACTATTTAA--CTTGCCA-AACGGACGCTATAAG---AG-CATGT-CTT-TATTC--GGTCT-G-ACTCCAT-T-TG---ACTT-CGC-A-TCTT--------------TC-ATAAG--ATA---T---TC-CGA-AT----AC-A-TAA---CATG-ATT------T-------GTAAG-GT----GTGGAGA-G-T-CAG-AT-C-TG-ATAAATCA
gi|6 : ATATACATTAT-TCTTGTG----TCCAA--TACTGGA-T---GTTGATAATGTGGACCTGAC-CACA-CTGA-TCTATT-CTATTA-TTT---CAC-TCGAA-TTAACTTAAGATGAAA-TAGTGTGTTGT------TAGCTTGGCAC----CAAAGGATTCGT-CATTTA--CACT-GTATG-TA-ATTT-GT
gi|6 : -TC-TCCCTTT-ATGTGTTTTG--TATGTTTCTTTTATAATTAAATTACATTTGTTT-A-ACAGTATCAAAACATT-ACGAGAGATGAAA--C--A--GAGCA-A-ACTT---ACA-TTTG-CTCGT-CTCTCTCCGACGCTATTTTG----AGCGTA-TATCT-AT--------A--T---ATTCCGTTAGATAGACA---TA-AG--TGTTA--TTCTA------T--TTTT-CATATTA-TCTCTTTTTTTCTT-CC------CTT--GCTCCC-TC--T-C-TGGCGAACCAACAACCTACCC-C--CACAAAAAAAT-CGTTTATTA-ATA-C-GAC----------T--TTTATT-CCCCATAT-A-TA-ATATATCATGCAAAC---TC-ACATCTCTA---TAT-CTAATCAA-A--TTG----------------C-TATGGAAG------CAA---AATTTCTGAAAAA---T-CC-AC---GT-----GTTAT-TTTG---TGTCCTATT-CAGATTA-TC---ACCTTCT-GA--------------CC-TGGTTTTTCA--AA-TGGTTGA--CGGG--A-AAGAGA------------AG-CATGT-CTCATAT-----ATAT-A-AT----T-C-TA---ACTC-CAT-A-TC-G--------------TC-ATATG----ATT-T---TC-CGA-TT----AT-A-TCGT--CATG-GTT------T-------GTCAG-AT----GTGGCGA-GTT-CAG-AT-C-TG-gtccgaatctgcctgctactagcacatagaggtatttttctccctttatgtgttttgtatgtttcttttataattaaattacatttgtttaacagtatcaaaacattacgagagatgaaacagagcaaacttacatttgctcgtctctctccgacgctattttgagcgtatatctatatattccgttagatagacataagtgttattctatttttcatattatctctttttttcttcccttgctccctctctggcgaaccaacaacctacccccacaaaaaaatcgtttattaatacgacttttattccccatatataatatatcatgcaaactcacatctctatatctaatcaaattgctatggaagcaaaatttctgaaaaatccacgtgttattttgtgtcctattcagattatcaccttctgacctggtttttcaaatggttgacgggaaagagaagcatgtctcatatatataattctaactccatatcgtcatatgattttccgattatatcgtcatggtttgtcagatgtggcgagttcagatctgac
gi|7 : atatacattattcttgtgtccaatactggatgttgataatgtggacctgaccacactgatctattctattatttcactcgaattaacttaagatgaaatagtgtgttgttagcttggcaccaaaggattcgtcatttacactgtatgtaatttgtgtccgaatctgcctgctactagcacatagaggtattttTATAAATTAT-TGTTA-C----T--GAC--GTTGA-------TTAA-A-TG-------GACACAAA-CTGACTGTATTGCTATTTGTTT---AACGTCGAA-T-GACTTATAAGAAAT-TAGTTGGTTG---------------------GCAACGAATTCGT-C-TTCA-AGCCT-ATG-A-TAGATTT---AA--GAAGCTGATTTCAG-TGTGTGAT-T--TCG-----GCC------GTT------ACGTATTGCATC--AGCTG----TATAG-ACTTCGTCGC-ACG-GTACTT-TA-CGGTAGTT-TCCCTCTGAT---TT--G--T---TTTTTTTT-TA-TT---TTGCATTTGGT--ATACAATGTCAA--CATT-ATG------GAGG--CCTA--GGGCA-ACA--T---ACAACTTGTCTTGTGCTGTGCCC-------TTTTGT-TAAGCGGCTTGTCT-A-CATTTCAGA--TGCGAT--CGGTAGAC-GACAAGCTAGAGGTTGTT--ATTCAAAAGC--TCGTGCTGC---TTATTGTCGTTC---CTGTCT--AACTCTT--GAACAC-AA--TACGACGTAATCGAA-AA---AT-C-T--CA------AA--TGTATAT---A-ACC-AATCG--------T--TG-ATT-CC-----T-A-TA-AGATC------AGAATATTCAA-ATATC-AGT-TATCC-AATCAATAA-TTA------------------T------G------CAA---AA--------GAA---C--A-ACG--GTGG---GTTA---TTG---TGCCCTTTT-TAGACc
gi|8 : tttagTC---CTG-TC--A--TCTT--GAACTC-AA------ATGTAAATCAG-AA--CGTCC-CGCCA------A-----TATTTCCCA-A-C-ATC----------TATTA-A---CCT---AT-AACATATATA------AAA----TT-A-ATCT----T-TG----AAGCAA-AA-GT-------------------T------G------GAG---AA--------AAA---T-CC-AC---GT-----GTTATAT--G---TGCTGTATT-TAGATTAACCTTTA-----T-GACCTTTTTTTTTTTTAATTAGTTA-----AAACCATCAGA--CTTGACA-GACAGA----ATA-G---AG-AATTT-CTC-TATTC--GATCT-G-ACTCCAT-C-TG---ACTT-CATGA-TCTG--------------TC-TTATG----ATT-T---TC-CTATTT----AC-A-CGG---TATG-ATT------T-------GTCAG-ATGCACGTTGCGA-G-T-CAG-AT-CGTG--TAAAac
gi|9 : ------T--TTCT-C----------CTTTC---CTG-CC--A--TTTT--TAACTC-AA---AC-ACATGAATGGA-AA--TGT-C-T--CACC----AATATTTAT-C---A-A-C-ATC----------T--TA-ATT-CTC-----------ATATC------AAT----TT-A-ATCTC---TATAT-T-AATCTA-AA-TTA----------------CGTTGGA--G------CAA---AAATTAGGG-GAAAATC-T--AC---GT-----GTTAT
gi|9 : tcaacaaccttttGTTATTTA--AACCATCTGA--CTTGCCA-GACGGA----AT-AG---AT-TATAT-CTC-TATTC--GATCT-T-ACTTTAT-T-Tttaaaccatctgacttgccagacggaatagattatatctctattcgatcttactttatttctgtcgtgtaaaatgtggcgagtcagatctcataa
gi|9 : tcaacaacctttttttctcctttcctgccatttttaactcaaacacatgaatggaaatgtctcaccaatatttatcaacatcttaattctcatatcaatttaatctctatattaatctaaattacgttggagcaaaaattaggggaaaatctacgtCCAT-C-TG---ACTT-GCC-A-GACG--------------GA-ATAGATTATATC-TCTATT-CGA-TC---------TTA---CTTT-ATT------TCTGTCGTGTAAA-AT----GTGGCGA-G-T-CAG-AT-C-TC-ATAActgtcgtgtaaaatgtggcgagtcagatctcataa
12 sequences could not be aligned to this reference sequence:
Unaligned ( gi|12 ): CCCTGCTATTTTGAGCTCAGATATGAATCAAAATTTTCTCAACATCCTCATAACCATAATAGGTGTACATCAAATTACACTCTGCATTCTTTGAAGGAAACGTTTGGGGGAAAATCCACGTGTTTTTGTGCTGT
Unaligned ( gi|19 ): CTACGGAAGCACCATTGAGCCAGTTTATAGAAAGATATTTTTTTTATTGGTTTAAACGCATTAA
Unaligned ( gi|21 ): TTAACGCAATAATGTGCGTTTAATCCAATGAATTTGGCGTTTAAAATGCAAATA
Unaligned ( gi|22 ): TCTCTATTAATCTAAATTATAACTTTGGGGCAAAAGTTCAGGAAAAATCCAC
Unaligned ( gi|23 ): TACGGAAGGCCATTGAGGCCAGCACATGGAGAGATATTTTTTATTGCGT
Unaligned ( gi|24 ): ATGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNC
Unaligned ( gi|25 ): ACGGAAGCCCGTTGAGGCCAGGTTATAGAAAGATATTTTTATTGCGTT
Unaligned ( gi|28 ): ACGGAAGCCCATTGAGGCCAGTTTATAGAAGATATTTTTTTT
Unaligned ( gi|29 ): AATTTGCGAATTTTTATAATTATGTTTAAACGTTCAATATT
Unaligned ( gi|30 ): TACGGAAGCCCATTAAGGCCAGTACAAAGAGAGATATTTT
Unaligned ( gi|31 ): ACGGAAGCCCATTAAGGCCAGTACAAAGAGAGATATTTTT
Unaligned ( gi|33 ): CGGAAGCCCATTGAGGCCAGTTTATA
Alignments
lowQualScore : 2222 11 1111111 1111111 1111 1 333333333333333333333333 111111 1 11 1111 11 1 111 111 111 1 11 1 11 111111 1111111 222222222 222 111111 111 2222222222 1111111 1111 22222 444444444444444444444444444444444 2222222222222222222 111 11111 444444444444444444444444444 11111 3333 111 22222222222222 1111111
lowQualScore : 5 5 0000 00 2222222 5 8888888 5 5 0 5 5 0000 1 5 1 5 888888888888888888888888 0 5 5 5 5 5 5 5 99 6 6 6 6 99 44 2 999999 3 55 2222 33 6 1 2 6 1 5 66 1 000 77 000 1 5 5 000 1 33 5 0 11 5 444444 66 66 5 2 999999 0 5 3 5 1 6666666 5 5 4 4 4 66 777 66 4 777 5 1 222222222 2 4 777 444 666 7 55555 55 1 3 888 3 3 55 1 9999 777777 4 1 222 4 4 3 0000000000 55 7 3 666 3 55 3 1111111 1111 3 3 66666 9999 3 3 555555555555555555555555555555555 666 7777777777777777777 000 44444 8 777 0 4 4 111111111111111111111111111 3 55555 0 55 3 0000 44 666 3 3 3 55 3 3 3 3 000 88888 3 11111111111111 7 0 999999999999 3 3 9999 3 3 1 888 6 888888 0000000 1 3 8888 3 3 3 3 3 3 3
lowQualScore : . . .... .. ....... . ....... . . . . . .... . . . . ........................ . . . . . . . . .. . . . . .. .. . ...... . .. .... .. . . . . . . .. . ... .. ... . . . ... . .. . . .. . ...... .. .. . . ...... . . . . . ....... . . . . . .. ... .. . ... . . ......... . . ... ... ... . ..... .. . . ... . . .. . .... ...... . . ... . . . .......... .. . . ... . .. . ....... .... . . ..... .... . . ................................. ... ................... ... ..... . ... . . . ........................... . ..... . .. . .... .. ... . . . .. . . . . ... ..... . .............. . . ............ . . .... . . . ... . ...... ....... . . .... . . . . . . .
lowQualScore : 7 0 0000 77 1111111 7 6666666 7 7 7 7 7 1111 4 7 0 7 000000000000000000000000 7 7 7 7 7 7 7 7 22 7 7 7 7 22 88 5 222222 3 88 7777 33 7 0 5 7 0 7 77 4 000 99 000 7 7 7 000 4 66 0 0 99 0 444444 99 99 0 5 888888 4 0 1 0 4 2222222 0 0 0 0 4 11 888 11 0 000 0 8 777777777 4 4 888 777 444 3 55555 00 0 6 333 6 6 00 4 4444 000000 0 1 555 0 0 6 9999999999 00 3 6 444 6 66 6 5555555 4444 6 6 66666 1111 6 6 555555555555555555555555555555555 444 2222222222222222222 000 11111 1 000 1 0 4 111111111111111111111111111 4 00000 8 00 6 9999 22 444 6 6 3 00 6 6 3 3 000 77777 6 44444444444444 3 6 000000000000 3 1 6666 1 1 0 555 2 888888 0000000 0 1 9999 1 1 1 1 1 1 1
consensus : ATATGAATTAT-TGTTATC----TCAAAC-TGTTGGA-T---GTTAA-AATG-------GACACAAA-CTGA-TGTATT-CTATTT-TTT---AAC-TCGAA-TTNACTTATAAAGAAA-TAGTGTGTTGTGTACGGTAACTTTGCCCGGAGCAACGCATTCGT-C-TTCA-GCCCT-ATATA-TA-ATTT-GTAA--GA-GCTGATTTCAG-T-TGTGAT-T--TCGTATCTGACTTCATTGTT------ACAT-TTGCACG--ACCTG---GTATAGGACTT-GTCGA-ACGTGTACTTCTT-TGGTA-TN-TCCCTCT-AT---TTTTG--T---TTTGTTTT-TA-TT---TTGC-TTTGGT--A-ACAAT-TCAA--CATT-ATG------GAGG--CCTA--GGGCA-ACATTT---ACAATTCG-CTCGT-CTGTGCCC-------TTTTGT-T-AGCGGC-TGCCT-ACCATTTCA-A--T---AT--CGGTAGAC-GACA---TAGAGGTTGTTAAATTCAA------T--TTCT-C---TTA-TGTCTTTC---CTG-CC--A--TCTT--GAACNC-AA--TAC-ACGTAAATGAA-AA--TATCC-T--CA------AAT-TGTATAT---A-A-C-AAC----------T--TA-ATT-CCC---AT-A-CA-ATATN------AAA----TC-A-ATCTC-AGT-TAT-C-AATCAA-AA-TTA----------------C-T------G------CAA---AA--------GAA---C-TA-AC---GT-----GTTATATTTG---TGCCCTTTT-TAGACTA-CC---A-----T-GA--------------AAATGGTTGTTCACAAACTATTTGA--CTTGCCA-AACGGACGCTATAAG---AG-CATGT-CTC-TATTC--GGTCT-G-ACTCCAT-C-TG---ACTT-CGC-A-TCTG--------------TC-ATAAG--ATATT-T---TC-CGA-TT----AC-A-TNA---CATG-ATT------T-------GTNAG-AT----GTGGCGA-G-T-CAG-AT-C-TG-ATAAATCA
Reference ( family-2261 ) : ATATGAATTAT-TGTTATC----TCAAAC-TGTTGGA-T---GTTAA-AATG-------GACACAAA-CTGA-TGTATT-CTATTT-TTT---AAC-TCGAA-TTNACTTATAAAGAAA-TAGTGTGTTGTGTACGGTAACTTTGCCCGGAGCAACGCATTCGT-C-TTCA-GCCCT-ATATA-TA-ATTT-GTAA--GA-GCTGATTTCAG-T-TGTGAT-T--TCGTATCTGACTTCATTGTT------ACAT-TTGCACG--ACCTG---GTATAGGACTT-GTCGA-ACGTGTACTTCTT-TGGTA-TN-TCCCTCT-AT---TTTTG--T---TTTGTTTT-TA-TT---TTGC-TTTGGT--A-ACAAT-TCAA--CATT-ATG------GAGG--CCTA--GGGCA-ACATTT---ACAATTCG-CTCGT-CTGTGCCC-------TTTTGT-T-AGCGGC-TGCCT-ACCATTTCA-A--T---AT--CGGTAGAC-GACA---TAGAGGTTGTTAAATTCAA------T--TTCT-C---TTA-TGTCTTTC---CTG-CC--A--TCTT--GAACNC-AA--TAC-ACGTAAATGAA-AA--TATCC-T--CA------AAT-TGTATAT---A-A-C-AAC----------T--TA-ATT-CCC---AT-A-CA-ATATN------AAA----TC-A-ATCTC-AGT-TAT-C-AATCAA-AA-TTA----------------C-T------G------CAA---AA--------GAA---C-TA-AC---GT-----GTTATATTTG---TGCCCTTTT-TAGACTA-CC---A-----T-GA--------------AAATGGTTGTTCACAAACTATTTGA--CTTGCCA-AACGGACGCTATAAG---AG-CATGT-CTC-TATTC--GGTCT-G-ACTCCAT-C-TG---ACTT-CGC-A-TCTG--------------TC-ATAAG--ATATT-T---TC-CGA-TT----AC-A-TNA---CATG-ATT------T-------GTNAG-AT----GTGGCGA-G-T-CAG-AT-C-TG-ATAAATCA
gi|1 : ATATGAATTATGTGT-ATC----TCAAAC-TGTTG-A-T---GTTAA-AATG--------ACACAAA-CTGA-TGTATT-CTATTT-TT----AACATGAAA-TTTACTTATAAAGAAAATAGTGTGT-GTGTACAGTAACTTTGCCCGGAGCAACACATCCGTTC-TTCAAGCCCTTATATA-TA-ATTTTGTAA--GA-GCT-ATTTCAG-T-TGTGATCT--TCGTATCTGACTT-ATTGTT------ACATCTTGCACG--ACCGG---ATATAGGACTT--TCGA-ACGTTGACTTCTTGTAGTA-TTGTCCCTCTTAT---TTTTG--T---TT-GTTTT-TA-TT---ATGC-TTTGGT--A-ACAAT-TCAAA-CATT-ATG-------AGG--CCTA--GG-CA-ACATTT---ACAATTCG-CTTGT-CTGT-CCC-------TTTTGT-T-AGCGGC-TGCCT-ACCATTTCA-A--T---AT--CGGTAGAC-GACA---TAGAGCTT--TAAATTCAA------T--T-CT-C---TTA-TGTCTTTC---CTGGTT--A--TCTTTTGAACACCAAGTTAC-ACGTAAATGAA-AA--TATCCCT--CA------AAT-TGTATAT---A-A-CAAAC----------T--TA-ATT--CC---AT-A-CA-ATATT------AAA----TC-A-ATCTC-AGT-TAT-C-AATCAA-AA-TTA----------------C-T------GC-----CAA---AA--------GAA---C-TA-AC---GT-----GTTATATTTG---TGCCCTTTTAGGGACTA-CT---A-----T-GA--------------AAAAGGTTGTTCACAAACTATTTAA--CTTGCCA-AACGGACGCTATAAG---AG-CATG--CTT-TATTC--GGTCT-G-ACTCCAT-T-TGCTTCCTC-CGC-A-TCTT--------------TCAATAAG--ATA---T---TC-CGA-AT----AC-A-TAA---CATGCATT------T-------GTAAG-GT----GTGGAGA-G-T-CAG-AT-C-TG-ATAAA
gi|10 : taacgcaatgacattttggcgtttaattcgcaataatatttgcggttaatcgcaatacctttatTTGAACCTTGCCC-AACGGA----A-AAG---AT-CTTTC-CTC-TATTC--GGTCCAG-ACTCCAT-C-TG---ACTTTCAC-A-TCTG--------------TCCATAAG--ATATT------CACGA-TT----AC-A-TTATCACATC-ATT------T-------GTTAG-AT----GTGGCGA-A-TCCAGAAT-C-TG-atc
gi|11 : aaatgg-AAA----------T--TG-ATT-CCC---AT-A-AT-ATATG------AAA----TT-A-AGGCC-----TA----AATTAA-AA-TT-----------------T-T------GTTTGTTNNN---NN--------NNN---N-NN-NN---GT-----GTTAT--TTG---TGC----TT-TGCGCTA-CC---T-----T-TC--------------GGCTAGTTTTTC----------TGA--CTTGCCA-GACAGA----AT-AG---AG-CACGT-CTC-Tacaaacatat
gi|13 : cngTTGA--CTCGACATGACGGA----ATA-G---AG-CATGT-CTC-TATTC--GATCT-G-AC-CCATGC-TGA--ACTT-----A-TATG--------------TC-TTAAT--GT-TT-T---CC-CTA-TT----TC-A-CGG---TATG-ATT------T-------GTCAG-AT----GTG--GA-G-T-CAC-AT-C-TG-ACAtat
gi|14 : aAC----------T--TA-ATT-CCC---AT-A-AA-ATATG------AAA----TT-A-ATCTCTA---TAT-C-AATCAA-AA-TTATTTTGGACCAGAAGTTC-T------G------CAA---AA----------A---G-TC-AC---GT-----CTTAT--TTG---TGCCCTCTT-TAGACTA-CC---A-----ccataatc
gi|15 : TAGAC-GATA---TCGAGGTTGTTAAATTCAA------C--TCCT-C---TTA-TGTTTTTC---CTG-CC--A--TCTT--GAACCC-AA---AT-ACGTAAATGAA-TA--TATCT-A--CA------AAT-TGTATAT---A-A-C-AA
gi|16 : -ACAAT-TCAA--CATT-TTG------AAGG-----A--AGACA-A---TC---ATATTTTA-CTCAT-TTGTGCCC-------CAATGT-T-AGCGGT-TGCCTCATCAT
gi|17 : tcctattttTC-TATTC--GATCG-G-ACTCCAT-C-TG---ACTT-C-----------------------------------ATT-T---TC-CTA-TTT---AC-A-CGG---TATG-ATT------T-------GTCAG-AT----GTGGCGA-G-T-CAG-AT-G-TG-AAAAATCAcatcattcattgg
gi|18 : ATT-T---TC-CTA-TTTTACAC-AGTAA---TA-G-ATT------T-------GTAAG-ATT---ATGGCGA-G-T-CAG-ATCC-TGAACAAATCAtatcg
gi|2 : ttcttgATTTT-TTTTATTGCGTTTAAACATGTTAAA-TTATGTTAA-AATG-------GACACAAA-CTGG-TTTATT-ACATTT-TTC---A-T-TCGGA-TTGACTTATAAAGAAA-TAGTGTATATTGT---TTAACTTTACAC----CAACACATTCGC-C-TTCA-GCCCT-ATATA-TA-ATTT-GTAA--GA-GCTGATTTTAG-T-TGTGAT-T--TCGCATCTTACTTCATTGTT------ACAT-TTGCACATAATTTG---GTTTATGACTT-GTCGG-ACATGTACTTCTT-TAGTA-TT-TCCCTCC-AG---TTTTG--T---TTTGTTAT-TA-TT---TTGC-TTTGGT--A-ACAAT-TCAA--CATT-ATG------GAGG--CCTA--GGGCA-ACA---------ACTTG-CTAGT-CTGTGCCC-------TTTTGT-T-AGCGGC-TGCCT-ACCATTTCA-A--T---AT--CGGTAGAC-AACA---TAGAGGCTGTTCAATTCAA------C--TCAT-C---TTA-TTTCTTCC---GTG-CC--A--TCTT--GAACCC-AA---AC-ACGTAAATGAA-AA--TATGC-T--CA------AAT---TATAT---A-A-C-AACTTAATTGAAGT--TA-ATT-CCC---AT-A-AA-ATATG------AAA----TC-A-ATCTC-GGG-TAT-T-AATCAA-AA-TTA----------------C-T------G------CAAAACAA--------AAA---C--A-AC---GT-----GTTATATTTG---TGTCCTTTT-AAGGCTA-CC---ATTTT-T-TA--------------AAATGGTTG-----AAACTATCTAA--CTTGCCA-AACGGACCCTATAAG---AG-TATGT-CTT-TATTC--AGTCT-G-ACTCCAT-T-TG---ACTT-CGC-A-TCTG--------------TC-ATAAG--ATA---T---TC-CGA-TT----AC-A-TCA---CATA-ATTTGTAAAT-------GTAAG-AT----GTGGCGA-G-T-CAG-AT-T-TG-ATAAATCAtatcgtgtaa
gi|20 : tacggaagcccattgaggccagtttaaagaaagatTC---CTG-CC--A--TTTT--GAATTC-AA------ACGTAAATCAG-AG--TGTCC-ta
gi|26 : C-TGCCT-ACCATTTGA-A--T---AT--TCGTAGAA-GACA---TAGAAGTTGTTAAcacccatatttcccaacatc
gi|27 : GGT-TGCCT-ACCATTTCA-A--T---AT--CCGTAGCA-GACA---CAGAGGTTG
gi|3 : GAATTAT-TGT-ATCAC--TCAAAC--GTTGAAGT---GTTAA-AATG-------GACA-AAA-CTGA-TTTATT-TTATTT-TTTTGTAAC-TCGAAATTGACTTAAAAAGAAA-TAGTGTGT-----ATGG----------CG----AACGTATTC--------A-GCC-T-ATATAATA-ATTT-GTAATGAA-GCTGATTTCAGAT-TGTGTT-TATTCGT-------TACATTGCTCGTATCATAT-CTA-ACGG-ACCTGTATGTAAAGGACTT--TCGACAC-TATTGTTATT-TGATT-TA-TC------AT---TTTTGACT---TTAGTTTT-TA-TT---GTG---TTGGTGAA-ACAAT-TCAA--CATTTATG------GAGGTTCCTATGGGGCATACATTTTTTACAACTTG-CTTGT-CTGTA-CC-------TTTTGTAT-AGC-GC-TGTCT-ATTAATTTA-AAGT---AC--AGGTAAAC-----------------TTCAATGCAATCATACT--TTCT-A---TTA---TCT------CTG-CCAAA--CCTT--GAACAC--G--TAC-ACGTAAATGAA-AA--AATCTAT--CA------AGT-TG-ATTT---A-A-C-AAC----------T--TATATTGTGC---ATAA-CA-ATATA------AAA----TC--------------------ATCAA-AACTTA----------------C-TTC----G------CAA---AA--------GAA---CGTAGACTTAGTCCCACGTCGTATTTAGATTGAGCCTTA-TAGACTA--T---A-----TAGT--------------CAATAAGTG-TGACATACT-TTTAA--CTTGCAA-AAC-GACGCTATAAGTAAAGACATGTACTT-TATTCGTGGTCT-GAACTTCAT-CGTA---ATTG-AAC-ACTCTGTGAGCATAAAAGTCTC-ATAGA--AGATTAT---TC-GAA-TA----ACAA-TCA---CATGAATT------T-------GTAAGTGT----GTGGAGAGG-T-TAG-AT-A-TG-ATAc
gi|32 : T----GTGGCGA-G-T-CAG-AT-C-TG-ACAAATCAtaacata
gi|32 : -TT----GC-A-TGA---TATG-ATT------T-------GTCAG-AT----CTGACtatcatgcaaat
gi|4 : tgtggcgaATATGAATTAT-TGTTATC----TCAAAC-TGTTGGA-T---GTTAA-AATG-------GACACAAA-CTGA-TGTATT-CTATTT-TTT---AAC-TCGAA-TTTACTTATAAAGAAA-TAGTGTGTTGTGTACAGTAACTTTGCCCGGAGCAACACATTCGT-C-TTCA-GCCCT-ATATA-TA-ATTT-GTAA--GA-GCTGATTTCAG-T-TGTGAT-T--TCGTATCTGACTTCATTGTT------ACAT-TTGCACG--ACCTG---GTATAGGACTT-GTCGA-ACGTGTACTTCTT-TAGTA-TG-TCCCTCT-AT---TTTTG--T---TTTGTTTT-TA-TT---TTGC-TTTGGT--A-ACAAT-TCAA--CATT-ATG------GAGG--CCTA--GGGCA-ACATTT---ACAATTCG-CTTGT-CTGTGCCC-------TTTTGT-T-AGCGGC-TGCCT-ACCATTTCA-A--T---AT--CGGTAGAC-GACA---TAGAGCTTGTTAAATTCAA------T--TTCT-C---TTA-TGTCTTTC---CTG-TT--A--TCTT--GAACAC-AAGTTAC-ACGTAAATGAA-AA--TATCC-T--CA------AAT-TGTATAT---A-A-C-AAC----------T--TA-ATT-CCC---AT-A-CA-ATATT------AAA----TC-A-ATCTC-AGT-TAT-C-AATCAA-AA-TTA----------------C-T------G------CAA---AA--------GAA---C-TA-AC---GT-----GTTATATTTG---TGCCCTTTT-TAGACTA-CT---A-----T-GA--------------AAATGGTTGTTCACAAACTATTTAA--CTTGCCA-AACGGACGCTATAAG---AG-CATGT-CTT-TATTC--GGTCT-G-ACTCCAT-T-TG---ACTT-CGC-A-TCTT--------------TC-ATAAG--ATATT-T---TC-CGA-AT----AC-A-TAA---CA-G-ATT------T-------GTAAG-GT----GTGGAGA-G-T-CAG-AT-C-TG-ATAAATCAat
gi|5 : ATATGAATTAT-TGTTATC----TCAAAC-TGTTGGA-T---GTTAA-AATG-------G-CACAAAACTGA-TGTATT-CTATTT-TTT---AAC-TCGAA-TTTACTTATAAAGAAA-TAGTGTGTTGTGTACAGTAACTTTGCCCGGAGCAA-ACATTCGT-C-TTCA-GCCCT-ATATA-TA-ATTT-GTAA--GA-G-TGATTTCAG-T-TGTGAT-T--TCGTATCTGACTTCATTGTT------ACAT-TTGCACG--ACCTG---GTATAGGACTT-GTCGA-ACGTGTACTTCTT-TG-TA-TG-TCCCTCT-AT---TTTGT--T---TTTGTTTT--A-TT---TTGC-TTTGGT--A-ACAAT-TCAA--CATT-ATG------GAGG--CCTA--GGGCA-ACATTT---ACAATTCG-CTTGT-CTGTGCCC-------TTTTGT-T-AGCG-C-TGCCT-ACCATTTCA-A--T---AT--CGGTAGAC-GACA---TAGAGCTTGTTAAATTCAA------T--TTCT-C---TTA-TGTCTTTC---CTG-TT--A--TCTT--GAACAC-AAGTTAC-ACGTAAATGAA-AA--TATCC-T--CA------AAT-TGTATAT---A-A-C-AAC----------T--TA-ATT-CCC---AT-A-CA-ATATT------AAA----TC-A-ATCTC-AGT-TAT-C-AATCAA-AA-TTA----------------C-T------G------CAA---AA--------GAA---C-TA-AC---GT-----GTTATATTTG---TGCCCTTTT-TAGACTA-CT---A-----T-GA--------------AAATGGTTGTTCACAAACTATTTAA--CTTGCCA-AACGGACGCTATAAG---AG-CATGT-CTT-TATTC--GGTCT-G-ACTCCAT-T-TG---ACTT-CGC-A-TCTT--------------TC-ATAAG--ATA---T---TC-CGA-AT----AC-A-TAA---CATG-ATT------T-------GTAAG-GT----GTGGAGA-G-T-CAG-AT-C-TG-ATAAATCA
gi|6 : ATATACATTAT-TCTTGTG----TCCAA--TACTGGA-T---GTTGATAATGTGGACCTGAC-CACA-CTGA-TCTATT-CTATTA-TTT---CAC-TCGAA-TTAACTTAAGATGAAA-TAGTGTGTTGT------TAGCTTGGCAC----CAAAGGATTCGT-CATTTA--CACT-GTATG-TA-ATTT-GT
gi|6 : -TC-TCCCTTT-ATGTGTTTTG--TATGTTTCTTTTATAATTAAATTACATTTGTTT-A-ACAGTATCAAAACATT-ACGAGAGATGAAA--C--A--GAGCA-A-ACTT---ACA-TTTG-CTCGT-CTCTCTCCGACGCTATTTTG----AGCGTA-TATCT-AT--------A--T---ATTCCGTTAGATAGACA---TA-AG--TGTTA--TTCTA------T--TTTT-CATATTA-TCTCTTTTTTTCTT-CC------CTT--GCTCCC-TC--T-C-TGGCGAACCAACAACCTACCC-C--CACAAAAAAAT-CGTTTATTA-ATA-C-GAC----------T--TTTATT-CCCCATAT-A-TA-ATATATCATGCAAAC---TC-ACATCTCTA---TAT-CTAATCAA-A--TTG----------------C-TATGGAAG------CAA---AATTTCTGAAAAA---T-CC-AC---GT-----GTTAT-TTTG---TGTCCTATT-CAGATTA-TC---ACCTTCT-GA--------------CC-TGGTTTTTCA--AA-TGGTTGA--CGGG--A-AAGAGA------------AG-CATGT-CTCATAT-----ATAT-A-AT----T-C-TA---ACTC-CAT-A-TC-G--------------TC-ATATG----ATT-T---TC-CGA-TT----AT-A-TCGT--CATG-GTT------T-------GTCAG-AT----GTGGCGA-GTT-CAG-AT-C-TG-gtccgaatctgcctgctactagcacatagaggtatttttctccctttatgtgttttgtatgtttcttttataattaaattacatttgtttaacagtatcaaaacattacgagagatgaaacagagcaaacttacatttgctcgtctctctccgacgctattttgagcgtatatctatatattccgttagatagacataagtgttattctatttttcatattatctctttttttcttcccttgctccctctctggcgaaccaacaacctacccccacaaaaaaatcgtttattaatacgacttttattccccatatataatatatcatgcaaactcacatctctatatctaatcaaattgctatggaagcaaaatttctgaaaaatccacgtgttattttgtgtcctattcagattatcaccttctgacctggtttttcaaatggttgacgggaaagagaagcatgtctcatatatataattctaactccatatcgtcatatgattttccgattatatcgtcatggtttgtcagatgtggcgagttcagatctgac
gi|7 : atatacattattcttgtgtccaatactggatgttgataatgtggacctgaccacactgatctattctattatttcactcgaattaacttaagatgaaatagtgtgttgttagcttggcaccaaaggattcgtcatttacactgtatgtaatttgtgtccgaatctgcctgctactagcacatagaggtattttTATAAATTAT-TGTTA-C----T--GAC--GTTGA-------TTAA-A-TG-------GACACAAA-CTGACTGTATTGCTATTTGTTT---AACGTCGAA-T-GACTTATAAGAAAT-TAGTTGGTTG---------------------GCAACGAATTCGT-C-TTCA-AGCCT-ATG-A-TAGATTT---AA--GAAGCTGATTTCAG-TGTGTGAT-T--TCG-----GCC------GTT------ACGTATTGCATC--AGCTG----TATAG-ACTTCGTCGC-ACG-GTACTT-TA-CGGTAGTT-TCCCTCTGAT---TT--G--T---TTTTTTTT-TA-TT---TTGCATTTGGT--ATACAATGTCAA--CATT-ATG------GAGG--CCTA--GGGCA-ACA--T---ACAACTTGTCTTGTGCTGTGCCC-------TTTTGT-TAAGCGGCTTGTCT-A-CATTTCAGA--TGCGAT--CGGTAGAC-GACAAGCTAGAGGTTGTT--ATTCAAAAGC--TCGTGCTGC---TTATTGTCGTTC---CTGTCT--AACTCTT--GAACAC-AA--TACGACGTAATCGAA-AA---AT-C-T--CA------AA--TGTATAT---A-ACC-AATCG--------T--TG-ATT-CC-----T-A-TA-AGATC------AGAATATTCAA-ATATC-AGT-TATCC-AATCAATAA-TTA------------------T------G------CAA---AA--------GAA---C--A-ACG--GTGG---GTTA---TTG---TGCCCTTTT-TAGACc
gi|8 : tttagTC---CTG-TC--A--TCTT--GAACTC-AA------ATGTAAATCAG-AA--CGTCC-CGCCA------A-----TATTTCCCA-A-C-ATC----------TATTA-A---CCT---AT-AACATATATA------AAA----TT-A-ATCT----T-TG----AAGCAA-AA-GT-------------------T------G------GAG---AA--------AAA---T-CC-AC---GT-----GTTATAT--G---TGCTGTATT-TAGATTAACCTTTA-----T-GACCTTTTTTTTTTTTAATTAGTTA-----AAACCATCAGA--CTTGACA-GACAGA----ATA-G---AG-AATTT-CTC-TATTC--GATCT-G-ACTCCAT-C-TG---ACTT-CATGA-TCTG--------------TC-TTATG----ATT-T---TC-CTATTT----AC-A-CGG---TATG-ATT------T-------GTCAG-ATGCACGTTGCGA-G-T-CAG-AT-CGTG--TAAAac
gi|9 : ------T--TTCT-C----------CTTTC---CTG-CC--A--TTTT--TAACTC-AA---AC-ACATGAATGGA-AA--TGT-C-T--CACC----AATATTTAT-C---A-A-C-ATC----------T--TA-ATT-CTC-----------ATATC------AAT----TT-A-ATCTC---TATAT-T-AATCTA-AA-TTA----------------CGTTGGA--G------CAA---AAATTAGGG-GAAAATC-T--AC---GT-----GTTAT
gi|9 : tcaacaaccttttGTTATTTA--AACCATCTGA--CTTGCCA-GACGGA----AT-AG---AT-TATAT-CTC-TATTC--GATCT-T-ACTTTAT-T-Tttaaaccatctgacttgccagacggaatagattatatctctattcgatcttactttatttctgtcgtgtaaaatgtggcgagtcagatctcataa
gi|9 : tcaacaacctttttttctcctttcctgccatttttaactcaaacacatgaatggaaatgtctcaccaatatttatcaacatcttaattctcatatcaatttaatctctatattaatctaaattacgttggagcaaaaattaggggaaaatctacgtCCAT-C-TG---ACTT-GCC-A-GACG--------------GA-ATAGATTATATC-TCTATT-CGA-TC---------TTA---CTTT-ATT------TCTGTCGTGTAAA-AT----GTGGCGA-G-T-CAG-AT-C-TC-ATAActgtcgtgtaaaatgtggcgagtcagatctcataa
blockSeqs : . T GCGT AT AATTAT T TGGACCT A C G G TTGT G A G . TGTGTACAGTAACTTTGCCCGGAG . A . . A G . TG A A G . AT CA C CGTATC A TA TATG CG C A C . G G T G GTG AC ATG T A A AAA A GA T A AA T AGAGAT TT TG T C TTTTTT T C G G GACGCTA A A T C G AG GCG TC A AGC G A TCATACT C G ATA TTG TTT T AAA . C . GTT G C CC C CGC CAAAAA A A CCC T C . TTAATTGAAG AT T G CAT A AC T ATCATGC ATAT A C GGG TCT T C ATTTTGGACCAGAAGTTCTG AAC ATTAGGGGAAAATCT TTA CCCAC A GAT . A TTTATGACCTTTTTTTTTTTT C TTCAC AC T CCCT AA TAA A A A GT A A G G A TCAC C TGAGCATAAAAGTC C TTATATCTCTA A T TTAC A G T TCA A TGTAAA CTGTCGT T T GCAC G T C A C G A
blockSeqs : . T AC T AAGT . . . . . . C . . G . TGTGTACAGTAACTTTGCCCGGAG . . . . . . . . . . . . . TA C . . G G G . G A . A . A . . . . A . . . A T . G . . . . . . C TTT . A . G . . . . . . . . . . . G C AAGCTCG C . . TG . . AAC . C . GTT . . . G AT CC . A TA . . . CG . T . . . A . G C . . AGT TCC . . GCTATGGAAG . TTTCTGAAAAATCC G GG A . . . ACCTTCTGA A TTCAC . . CGCT AA . . . . . . . . . . CATG . . . AGATTAT . . T . . G T . . . C . T . . . . . . .
blockSeqs : . T . T GAT . . . . . . T . . T . ATTGTTTAACTTTACAC . . . . . . . . . . . . . TA C . . . G G . G C . G . G . . . . T . . . . . . . . . . . . . C TTT . T . A . . . . . . . . . . . G A C T . . TT . . A . T . T . . . C A . . T . . . . . . . . . . A . G . . . AGT TC . . TTGTTTGTT . GAACGTAG . . A . . . ATTTTTTA A TGAC . . CGCT AA . . . . . . . . . . CGC . . . ATATTT . . . . . G . . . . C . . . . . . . . .
blockSeqs : . T . T GAT . . . . . . T . . T . TGTTAGCTTGGCAC . . . . . . . . . . . . . T C . . . G G . G C . G . G . . . . T . . . . . . . . . . . . . C CTT . T . G . . . . . . . . . . . G C C T . . TG . . A . A . T . . . C T . . A . . . . . . . . . . A . G . . . AGT TT . . ACGTTGGAG . NNNNNN . . A . . . ATAGT A TTCA . . CGCT AA . . . . . . . . . . AAC . . . ATATT . . . . . A . . . . A . . . . . . . . .
blockSeqs : . T . . GAT . . . . . . T . . A . ATGGCG . . . . . . . . . . . . . . . . . . . . . . . . . . C . . . . T . . . . . . . . . . . . . C TC . T . G . . . . . . . . . . . C A T T . . TG . . A . A . T . . . C T . . A . . . . . . . . . . C . A . . . TA TC . . ACTTCG . GAACTA . . A . . . TTTC A TTTA . . . AA . . . . . . . . . . CGC . . . GTTTT . . . . . C . . . . A . . . . . . . . .
blockSeqs : . . . . A . . . . . . T . . G . TGG . . . . . . . . T . . . . T . . . . . . . . . . . . . . T . C . C . . . . . . . . . . . C A T T . . TC . . A . A . . . . . C T . . A . . . . . . . . . . C . T . . . TA TC . . ACTG . GAACTA . . . . . . ATGA T TTC . . . A . . . . . . . . . . CGC . . . ATTT . . . . . C . . . . A . . . . . . . . .
blockSeqs : . . . . . . . . . . . T . G . . . . . . . . . . . G A T G . . . . . A . C . . . . . C C . . A . . . . . . . . . . C . T . . . TA TT . . ACTG . AAATCC . . . . . . ATGA . . . . . A . . . . . . . . . . CAT . . . ATAT . . . . . G . . . . C . . . . . . . . .
blockSeqs : . . . . . . . . . . T T . . . . . A . A . . . . . C T . . T . . . . . . . . . . T . C . . . T . . . ACTG . AAACA . . . . . . . . . . A . . . . . . . . . . GCC . . . ATAT . . . . . A . . . . A . . . . . . . . .
blockSeqs : . . . . . . . A . T . . . . . . T . . . . . . . . . . . . . T . A . . . . . . . ATG . GAACA . . . . . . . . A . . . . . . . . . . C . . . ATTT . . . . . A . . . . A . . . . . . . . .
blockSeqs : . . . . T . . . . . . . . . . . . . . . C . . . . . . . TG . AGTC . . . . . . . . . . . . . . . . . . . . ATTT . . . . . C . . . . C . . . . . . . . .
blockSeqs : . . . . . . . . G . . . . C . . . . . . . . .
blockSeqs : . . . . T . . . . A . . . . . . . . .
blockSeqs : .
blockSeqCons : AAT**** T*** TGTGTTAACTTTGCAG******** G* N* ** ** *** T*** ACTG***************************** TTAC* **** ***
originalCons : ATATGAATTAT-TGTTATC----TCAAAC-TGTTGGA-T---GTTAA-AATG-------GACACAAA-CTGA-TGTATT-CTATTT-TTT---AAC-TCGAA-TTNACTTATAAAGAAA-TAGTGTGTTGTGTACGGTAACTTTGCCCGGAGCAACGCATTCGT-C-TTCA-GCCCT-ATATA-TA-ATTT-GTAA--GA-GCTGATTTCAG-T-TGTGAT-T--TCGTATCTGACTTCATTGTT------ACAT-TTGCACG--ACCTG---GTATAGGACTT-GTCGA-ACGTGTACTTCTT-TGGTA-TN-TCCCTCT-AT---TTTTG--T---TTTGTTTT-TA-TT---TTGC-TTTGGT--A-ACAAT-TCAA--CATT-ATG------GAGG--CCTA--GGGCA-ACATTT---ACAATTCG-CTCGT-CTGTGCCC-------TTTTGT-T-AGCGGC-TGCCT-ACCATTTCA-A--T---AT--CGGTAGAC-GACA---TAGAGGTTGTTAAATTCAA------T--TTCT-C---TTA-TGTCTTTC---CTG-CC--A--TCTT--GAACNC-AA--TAC-ACGTAAATGAA-AA--TATCC-T--CA------AAT-TGTATAT---A-A-C-AAC----------T--TA-ATT-CCC---AT-A-CA-ATATN------AAA----TC-A-ATCTC-AGT-TAT-C-AATCAA-AA-TTA----------------C-T------G------CAA---AA--------GAA---C-TA-AC---GT-----GTTATATTTG---TGCCCTTTT-TAGACTA-CC---A-----T-GA--------------AAATGGTTGTTCACAAACTATTTGA--CTTGCCA-AACGGACGCTATAAG---AG-CATGT-CTC-TATTC--GGTCT-G-ACTCCAT-C-TG---ACTT-CGC-A-TCTG--------------TC-ATAAG--ATATT-T---TC-CGA-TT----AC-A-TNA---CATG-ATT------T-------GTNAG-AT----GTGGCGA-G-T-CAG-AT-C-TG-ATAAATCA
finalCons : ATATGAATTAT-TGTTATC----TCAAAC-TGTTGAAT----GTTAA-AATG-------GACACAAA-CTGA-TGTATT-CTATTT-TTT---AAC-TCGAA-TTNACTTATAAAGAAA-TAGTGTGTTGTGTTAACTTTGCAG--------CAACGCATTCGT-C-TTCA-GCCCT-ATATA-TA-ATTT-GTAA--GA-GCTGATTTCAG-T-TGTGAT-T--TCGTATCTGACTTCATTGTT------ACAT-TTGCACG--ACCTG---GTATAGGACTTG-TCGA-ACGTGTACTTCTT-TGGTA-TN-TCCCTCT-AT---TTTTG--T---TTTGTTTT-TA-TT---TTGC-TTTGGT--A-ACAAT-TCAA--CATT-ATG------GAGG--CCTA--GGGCA-ACATTT---ACAATTCG-CTCGT-CTGTGCCC-------TTTTGT-T-AGCGGC-TGCCT-ACCATTTCA-A--T---AT--CGGTAGAC-GACA---TAGAGGTTGTTAAATTCAA------T--TTCT-C---TTA-TGTCTTTC---CTG-CC--A--TCTT--GAACNC-AA---AC-ACGTAAATGAA-AA--TATCCT---CA------AAT-TGTATAT---A-A-C-AAC----------T--TA-ATT-CCC---AT-A-CA-ATATN------AAA----TC-A-ATCTC-AGT-TAT-C-AATCAA-AA-TTACTG-----------------------------CAA---AA--------GAA---C-TA-AC---GT-----GTTATATTTG---TGCCCTTTT-TAGACTA-CC---A-----T-GA--------------AAATGGTTGTTAC-AAACTATTTGA--CTTGCCA-AACGGA----ATAAG---AG-CATGT-CTC-TATTC--GGTCT-G-ACTCCAT-C-TG---ACTT-CGC-A-TCTG--------------TC-ATAAG--ATATT-T---TC-CGA-TT----AC-A-TNA---CATG-ATT------T-------GTNAG-AT----GTGGCGA-G-T-CAG-AT-C-TG-ATAAATCA
12 sequences could not be aligned to this reference sequence:
Unaligned ( gi|12 ): CCCTGCTATTTTGAGCTCAGATATGAATCAAAATTTTCTCAACATCCTCATAACCATAATAGGTGTACATCAAATTACACTCTGCATTCTTTGAAGGAAACGTTTGGGGGAAAATCCACGTGTTTTTGTGCTGT
Unaligned ( gi|19 ): CTACGGAAGCACCATTGAGCCAGTTTATAGAAAGATATTTTTTTTATTGGTTTAAACGCATTAA
Unaligned ( gi|21 ): TTAACGCAATAATGTGCGTTTAATCCAATGAATTTGGCGTTTAAAATGCAAATA
Unaligned ( gi|22 ): TCTCTATTAATCTAAATTATAACTTTGGGGCAAAAGTTCAGGAAAAATCCAC
Unaligned ( gi|23 ): TACGGAAGGCCATTGAGGCCAGCACATGGAGAGATATTTTTTATTGCGT
Unaligned ( gi|24 ): ATGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNC
Unaligned ( gi|25 ): ACGGAAGCCCGTTGAGGCCAGGTTATAGAAAGATATTTTTATTGCGTT
Unaligned ( gi|28 ): ACGGAAGCCCATTGAGGCCAGTTTATAGAAGATATTTTTTTT
Unaligned ( gi|29 ): AATTTGCGAATTTTTATAATTATGTTTAAACGTTCAATATT
Unaligned ( gi|30 ): TACGGAAGCCCATTAAGGCCAGTACAAAGAGAGATATTTT
Unaligned ( gi|31 ): ACGGAAGCCCATTAAGGCCAGTACAAAGAGAGATATTTTT
Unaligned ( gi|33 ): CGGAAGCCCATTGAGGCCAGTTTATA
Alignments
lowQualScore : 2222 11 111111 1111111 1111 1 66666666666666666666666666 111111 1 11 1111 11 1 111 111 111 1 11 1 11 111111 1111111 222222222 222 111111 111 2222222222 1111111 1111 3333333333333333 11111111111 3333333333333333333333333333333 1111111 11111111 111 11111 444444444444444444444444444 22222 1111111 3333 111 22222222222222 11111111 1111 11111111111111
lowQualScore : 5 5 0000 00 555555 5 8888888 5 5 0 5 5 0000 1 5 1 5 88888888888888888888888888 0 5 5 5 5 5 5 5 99 6 6 6 6 99 44 2 999999 3 55 2222 33 6 1 2 6 1 5 66 1 000 77 000 1 5 5 000 1 33 5 0 11 5 444444 66 66 5 2 999999 0 5 3 5 1 6666666 5 5 4 4 4 66 777 66 4 777 5 1 222222222 2 4 777 444 666 7 55555 55 1 3 222 3 3 55 1 9999 777777 4 1 222 4 4 3 0000000000 55 7 3 666 3 55 3 1111111 1111 3 3 0000000000000000 77777777777 3 3 6666666666666666666666666666666 666 1111111 66666666 000 44444 3 777 0 4 4 000000000000000000000000000 0 77777 33 3 1111111 0000 1 3 3 3 55 3 3 3 3 000 3 666 3 11111111111111 3 3 0 44444444 555 3 3 0000 999 3 1 3 6 11111111111111 1 3 9999 3 3 3 3 3 3 3
lowQualScore : . . .... .. ...... . ....... . . . . . .... . . . . .......................... . . . . . . . . .. . . . . .. .. . ...... . .. .... .. . . . . . . .. . ... .. ... . . . ... . .. . . .. . ...... .. .. . . ...... . . . . . ....... . . . . . .. ... .. . ... . . ......... . . ... ... ... . ..... .. . . ... . . .. . .... ...... . . ... . . . .......... .. . . ... . .. . ....... .... . . ................ ........... . . ............................... ... ....... ........ ... ..... . ... . . . ........................... . ..... .. . ....... .... . . . . .. . . . . ... . ... . .............. . . . ........ ... . . .... ... . . . . .............. . . .... . . . . . . .
lowQualScore : 7 0 0000 77 111111 7 6666666 7 7 7 7 7 1111 4 7 0 7 99999999999999999999999999 7 7 7 7 7 7 7 7 22 7 7 7 7 22 88 5 222222 3 88 7777 33 7 0 5 7 0 7 77 4 000 99 000 7 7 7 000 4 66 0 0 99 0 444444 99 99 0 5 888888 4 0 1 0 4 2222222 0 0 0 0 4 11 888 11 0 000 0 8 777777777 4 4 888 777 444 3 55555 00 0 6 777 6 6 00 4 4444 000000 0 1 555 0 0 6 9999999999 00 3 6 444 6 66 6 5555555 4444 6 6 3333333333333333 33333333333 6 6 1111111111111111111111111111111 444 8888888 33333333 000 11111 2 000 1 0 4 333333333333333333333333333 8 22222 55 6 8888888 9999 3 6 6 3 00 6 6 3 3 000 6 000 6 44444444444444 6 6 6 22222222 888 3 3 4444 222 3 0 3 7 44444444444444 0 3 6666 1 1 1 1 1 1 1
consensus : ATATGAATTAT-TGTTATC----TCAAAC-TGTTGGA-T---GTTAA-AATG-------GACACAAA-CTGA-TGTATT-CTATTT-TTT---AAC-TCGAA-TTNACTTATAAAGAAA-TAGTGTGT--TGTGTACAGTAACTTTGCCCGGAGCAACGCATTCGT-C-TTCA-GCCCT-ATATA-TA-ATTT-GTAA--GA-GCTGATTTCAG-T-TGTGAT-T--TCGTATCTGACTTCATTGTT------ACAT-TTGCACG--ACCTG---GTATAGGACTT-GTCGA-ACGTGTACTTCTT-TGGTA-TN-TCCCTCT-AT---TTTTG--T---TTTGTTTT-TA-TT---TTGC-TTTGGT--A-ACAAT-TCAA--CATT-ATG------GAGG--CCTA--GGGCA-ACATTT---ACAATTCG-CTCGT-CTGTGCCC-------TTTTGT-T-AGCGGC-TGCCT-ACCATTTCA-A--T---AT--CGGTAGAC-GACA---TAGAGGTTGTTAAATTCAA------T--TTCT-C---TTA-TGTCTT---TCCTG-CC--A--TCTT--GAACNC-AA---AC-ACGTAAATGAA-AA--TATCC-T--CA------AAT-TGTATAT---A-A-C-AAC----------T--TA-ATT-CCC---AT-A-CA-ATATN------AAA----TC-A-ATCTC-AGT-TAT-C------AAT-----------CAA-AA-TTA----------------C-T----G------CAA---AA-------GAA---C-TA-AC---GT-----GTTATATTTG---TGCCCTTTT-TAGACTA-CC---A-----T-GAA-------------AATGGTTGTT-AC--AAACTATTTGACTTGCCA-AACG-------GAC-C-ATAAG-AGCATGT-CTC-TATTC--GGTCT-G-ACTCCAT-C-TG---AC-TTCGC-A-TCTG--------------T-C-ATAAG--ATATT-T---TC-CGA-TT----AC---A-TNA-CATG-ATT------T-------GTAAG-AT----GTGGCGA-G-T-CAG-AT-C-TG-ATAAATCA
Reference ( family-2261 ) : ATATGAATTAT-TGTTATC----TCAAAC-TGTTGAA-T---GTTAA-AATG-------GACACAAA-CTGA-TGTATT-CTATTT-TTT---AAC-TCGAA-TTNACTTATAAAGAAA-TAGTGTGT--TGTGT----TAACTTTGC----AGCAACGCATTCGT-C-TTCA-GCCCT-ATATA-TA-ATTT-GTAA--GA-GCTGATTTCAG-T-TGTGAT-T--TCGTATCTGACTTCATTGTT------ACAT-TTGCACG--ACCTG---GTATAGGACTT-GTCGA-ACGTGTACTTCTT-TGGTA-TN-TCCCTCT-AT---TTTTG--T---TTTGTTTT-TA-TT---TTGC-TTTGGT--A-ACAAT-TCAA--CATT-ATG------GAGG--CCTA--GGGCA-ACATTT---ACAATTCG-CTCGT-CTGTGCCC-------TTTTGT-T-AGCGGC-TGCCT-ACCATTTCA-A--T---AT--CGGTAGAC-GACA---TAGAGGTTGTTAAATTCAA------T--TTCT-C---TTA-TGTCTT---TCCTG-CC--A--TCTT--GAACNC-AA---AC-ACGTAAATGAA-AA--TATCC-T--CA------AAT-TGTATAT---A-A-C-AAC----------T--TA-ATT-CCC---AT-A-CA-ATATN------AAA----TC-A-ATCTC-AGT-TAT-C------AAT-----------CAA-AA-TTA----------------C-T----G------CAA---AA-------GAA---C-TA-AC---GT-----GTTATATTTG---TGCCCTTTT-TAGACTA-CC---A-----T-GAA-------------AATGGTTGTT-AC--AAACTATTTGACTTGCCA-AACG-------GA----ATAAG-AGCATGT-CTC-TATTC--GGTCT-G-ACTCCAT-C-TG---AC-TTCGC-A-TCTG--------------T-C-ATAAG--ATATT-T---TC-CGA-TT----AC---A-TNA-CATG-ATT------T-------GTNAG-AT----GTGGCGA-G-T-CAG-AT-C-TG-ATAAATCA
gi|1 : ATATGAATTATGTGT-ATC----TCAAAC-TGTTGA--T---GTTAA-AATG--------ACACAAA-CTGA-TGTATT-CTATTT-TT----AACATGAAA-TTTACTTATAAAGAAAATAGTGTGT---GTGTACAGTAACTTTGCCCGGAGCAACACATCCGTTC-TTCAAGCCCTTATATA-TA-ATTTTGTAA--GA-GCT-ATTTCAG-T-TGTGATCT--TCGTATCTGACTT-ATTGTT------ACATCTTGCACG--ACCGG---ATATAGGACTT--TCGA-ACGTTGACTTCTTGTAGTA-TTGTCCCTCTTAT---TTTTG--T---TT-GTTTT-TA-TT---ATGC-TTTGGT--A-ACAAT-TCAAA-CATT-ATG-------AGG--CCTA--GG-CA-ACATTT---ACAATTCG-CTTGT-CTGT-CCC-------TTTTGT-T-AGCGGC-TGCCT-ACCATTTCA-A--T---AT--CGGTAGAC-GACA---TAGAGCTT--TAAATTCAA------T--T-CT-C---TTA-TGTCTT---TCCTGGTT--A--TCTTTTGAACACCAAGTTAC-ACGTAAATGAA-AA--TATCCCT--CA------AAT-TGTATAT---A-A-CAAAC----------T--TA-ATT--CC---AT-A-CA-ATATT------AAA----TC-A-ATCTC-AGT-TAT-C------AAT-----------CAA-AA-TTA----------------C-T----GC-----CAA---AA-------GAA---C-TA-AC---GT-----GTTATATTTG---TGCCCTTTTAGGGACTA-CT---A-----T-GAA-------------AAAGGTTGTTCAC--AAACTATTTAACTTGCCA-AACG-------GACGCTATAAG-AGCATG--CTT-TATTC--GGTCT-G-ACTCCAT-T-TGCTTCC-TCCGC-A-TCTT--------------T-CAATAAG--ATA---T---TC-CGA-AT----AC---A-TAA-CATGCATT------T-------GTAAG-GT----GTGGAGA-G-T-CAG-AT-C-TG-ATAAA
gi|10 : taacgcaatgacattttggcgtttaattcgcaataatatttgcggttaatcgcaatacctttatA-------------AATGGTTG--------AAC-------CTTGCCC-AACG-------GA----A-AAG-ATCTTTC-CTC-TATTC--GGTCCAG-ACTCCAT-C-TG---ACTTTCAC-A-TCTG--------------TCC-ATAAG--ATA---T---TCACGA-TT----ACATTA-TCA-CATC-ATT------T-------GTTAG-AT----GTGGCGA-A-TCCAGAAT-C-TG-atc
gi|11 : -AAA----------T--TG-ATT-CCC---AT-A-AT-ATATG------AAA----TT-A-AGGCC-----TA---------AAT-----------TAA-AA-TT-----------------T-T----GTTTGTTNNN---NN-------NNN---N-NN-NN---GT-----GTTAT--TTG---TGC----TT-TGCGCTA-CC---T-----T-TCG-------------GCTAGTT-TT-----------TCTGACTTGCCA-GACA-------GA----AT-AG-AGCACGT-CTC-Tacaaacatat
gi|13 : cngTTGACTCGACATGACG-------GA----ATA-G-AGCATGT-CTC-TATTC--GATCT-G-AC-CCATGC-TGA--AC-TT----A-TATG--------------T-C-TTAAT--GT-TT-T---CC-CTA-TT----TC---A-CGG-TATG-ATT------T-------GTCAG-AT----GTG--GA-G-T-CAC-AT-C-TG-ACAtat
gi|14 : aAC----------T--TA-ATT-CCC---AT-A-AA-ATATG------AAA----TT-A-ATCTC---TATAT-C------AAT-----------CAA-AA-TTATTTTGGACCAGAAGTTC-T----G------CAA---A---------AA---G-TC-AC---GT-----CT--TATTTG---TGCCCTCTT-TAGACTA-CC---A-----ccataatc
gi|15 : TAGAC-GATA---TCGAGGTTGTTAAATTCAA------C--TCCT-C---TTA-TGTTTT---TCCTG-CC--A--TCTT--GAACCC-AA---AT-ACGTAAATGAA-TA--TATCT-A--CA------AAT-TGTATAT---A-A-C-AA
gi|16 : -ACAAT-TCAA--CATT-TTG------AAGG-----A--AGACA-A---TC---ATATTTTA-CTCAT-TTGTGCCC-------CAATGT-T-AGCGGT-TGCCTCATCAT
gi|17 : tcctattttTC-TATTC--GATCG-G-ACTCCAT-C-TG---AC-TTC------------------------------------ATT-T---TC-CTA-TTT---AC---A-CGG-TATG-ATT------T-------GTCAG-AT----GTGGCGA-G-T-CAG-AT-G-TG-AAAAATCAcatcattcattgg
gi|18 : ATT-T---TC-CTA-TTTTACAC---AGTAA-TA-G-ATT------T-------GTAAG-ATT---ATGGCGA-G-T-CAG-ATCC-TGAACAAATCAtatcg
gi|2 : ttcttgATTTT-TTTTATTGCGTTTAAACATGTTAAA-TTATGTTAA-AATG-------GACACAAA-CTGG-TTTATT-ACATTT-TTC---A-T-TCGGA-TTGACTTATAAAGAAA-TAGTGTATATTGT-T----TAACTTTAC----ACCAACACATTCGC-C-TTCA-GCCCT-ATATA-TA-ATTT-GTAA--GA-GCTGATTTTAG-T-TGTGAT-T--TCGCATCTTACTTCATTGTT------ACAT-TTGCACATAATTTG---GTTTATGACTT-GTCGG-ACATGTACTTCTT-TAGTA-TT-TCCCTCC-AG---TTTTG--T---TTTGTTAT-TA-TT---TTGC-TTTGGT--A-ACAAT-TCAA--CATT-ATG------GAGG--CCTA--GGGCA-ACA---------ACTTG-CTAGT-CTGTGCCC-------TTTTGT-T-AGCGGC-TGCCT-ACCATTTCA-A--T---AT--CGGTAGAC-AACA---TAGAGGCTGTTCAATTCAA------C--TCAT-C---TTA-TTTCTT---CCGTG-CC--A--TCTT--GAACCC-AA---AC-ACGTAAATGAA-AA--TATGC-T--CA------AAT---TATAT---A-A-C-AACTTAATTGAAGT--TA-ATT-CCC---AT-A-AA-ATATG------AAA----TC-A-ATCTC-GGG-TAT-T------AAT-----------CAA-AA-TTA----------------C-T----G------CAAAACAA-------AAA---C--A-AC---GT-----GTTATATTTG---TGTCCTTTT-AAGGCTA-CC---ATTTT-T-TAA-------------AATGGTTG-------AAACTATCTAACTTGCCA-AACG-------GACCCTATAAG-AGTATGT-CTT-TATTC--AGTCT-G-ACTCCAT-T-TG---AC-TTCGC-A-TCTG--------------T-C-ATAAG--ATA---T---TC-CGA-TT----AC---A-TCA-CATA-ATTTGTAAAT-------GTAAG-AT----GTGGCGA-G-T-CAG-AT-T-TG-ATAAATCAtatcgtgtaa
gi|20 : tacggaagcccattgaggccagtttaaagaaagat---TCCTG-CC--A--TTTT--GAATTC-AA------ACGTAAATCAG-AG--TGTCC-ta
gi|26 : C-TGCCT-ACCATTTGA-A--T---AT--TCGTAGAA-GACA---TAGAAGTTGTTAAcacccatatttcccaacatc
gi|27 : GGT-TGCCT-ACCATTTCA-A--T---AT--CCGTAGCA-GACA---CAGAGGTTG
gi|3 : GAATTAT-TGT-ATCAC--TCAAAC--GTTGAAGT---GTTAA-AATG-------GACA-AAA-CTGA-TTTATT-TTATTT-TTTTGTAAC-TCGAAATTGACTTAAAAAGAAA-TAGTGTGT---ATG------------GC----G--AACGTATTC--------A-GCC-T-ATATAATA-ATTT-GTAATGAA-GCTGATTTCAGAT-TGTGTT-TATTCGT-------TACATTGCTCGTATCATAT-CTA-ACGG-ACCTGTATGTAAAGGACTT--TCGACAC-TATTGTTATT-TGATT-TA-TC------AT---TTTTGACT---TTAGTTTT-TA-TT---GTG---TTGGTGAA-ACAAT-TCAA--CATTTATG------GAGGTTCCTATGGGGCATACATTTTTTACAACTTG-CTTGT-CTGTA-CC-------TTTTGTAT-AGC-GC-TGTCT-ATTAATTTA-AAGT---AC--AGGTAAAC-----------------TTCAATGCAATCATACT--TTCT-A---TTA---TCT------CTG-CCAAA--CCTT--GAACAC-GT---AC-ACGTAAATGAA-AA--AATCTAT--CA------AGT-TG-ATTT---A-A-C-AAC----------T--TATATTGTGC---ATAA-CA-ATATA------AAA----TC-------------------------AT-----------CAA-AACTTA----------------C-TTC--G------CAA---AA-------GAA---CGTAGACTTAGTCCCACGTCGTATTTAGATTGAGCCTTA-TAGACTA--T---A-----TAGTC-------------AATAAGTGTG-AC--ATACT-TTTAACTTGCAA-AACGACGCTATAA----GTAAA-GACATGTACTT-TATTCGTGGTCT-GAACTTCAT-CGTA---AT-TGAAC-ACTCTGTGAGCATAAAAGTCT-C-ATAGA--AGATTAT---TC-GAA-TA----ACA--A-TCA-CATGAATT------T-------GTAAGTGT----GTGGAGAGG-T-TAG-AT-A-TG-ATAc
gi|32 : T----GTGGCGA-G-T-CAG-AT-C-TG-ACAAATCAtaacata
gi|4 : ATATGAATTAT-TGTTATC----TCAAAC-TGTTGGA-T---GTTAA-AATG-------GACACAAA-CTGA-TGTATT-CTATTT-TTT---AAC-TCGAA-TTTACTTATAAAGAAA-TAGTGTGT--TGTGTACAGTAACTTTGCCCGGAGCAACACATTCGT-C-TTCA-GCCCT-ATATA-TA-ATTT-GTAA--GA-GCTGATTTCAG-T-TGTGAT-T--TCGTATCTGACTTCATTGTT------ACAT-TTGCACG--ACCTG---GTATAGGACTT-GTCGA-ACGTGTACTTCTT-TAGTA-TG-TCCCTCT-AT---TTTTG--T---TTTGTTTT-TA-TT---TTGC-TTTGGT--A-ACAAT-TCAA--CATT-ATG------GAGG--CCTA--GGGCA-ACATTT---ACAATTCG-CTTGT-CTGTGCCC-------TTTTGT-T-AGCGGC-TGCCT-ACCATTTCA-A--T---AT--CGGTAGAC-GACA---TAGAGCTTGTTAAATTCAA------T--TTCT-C---TTA-TGTCTT---TCCTG-TT--A--TCTT--GAACAC-AAGTTAC-ACGTAAATGAA-AA--TATCC-T--CA------AAT-TGTATAT---A-A-C-AAC----------T--TA-ATT-CCC---AT-A-CA-ATATT------AAA----TC-A-ATCTC-AGT-TAT-C------AAT-----------CAA-AA-TTA----------------C-T----G------CAA---AA-------GAA---C-TA-AC---GT-----GTTATATTTG---TGCCCTTTT-TAGACTA-CT---A-----T-GAA-------------AATGGTTGTTCAC--AAACTATTTAACTTGCCA-AACG-------GACGCTATAAG-AGCATGT-CTT-TATTC--GGTCT-G-ACTCCAT-T-TG---AC-TTCGC-A-TCTT--------------T-C-ATAAG--ATATT-T---TC-CGA-AT----AC---A-TAA-CA-G-ATT------T-------GTAAG-GT----GTGGAGA-G-T-CAG-AT-C-TG-ATAAATCAtatcatgcaaat
gi|5 : ATATGAATTAT-TGTTATC----TCAAAC-TGTTGGA-T---GTTAA-AATG-------G-CACAAAACTGA-TGTATT-CTATTT-TTT---AAC-TCGAA-TTTACTTATAAAGAAA-TAGTGTGT--TGTGTACAGTAACTTTGCCCGGAGCAA-ACATTCGT-C-TTCA-GCCCT-ATATA-TA-ATTT-GTAA--GA-G-TGATTTCAG-T-TGTGAT-T--TCGTATCTGACTTCATTGTT------ACAT-TTGCACG--ACCTG---GTATAGGACTT-GTCGA-ACGTGTACTTCTT-TG-TA-TG-TCCCTCT-AT---TTTGT--T---TTTGTTTT--A-TT---TTGC-TTTGGT--A-ACAAT-TCAA--CATT-ATG------GAGG--CCTA--GGGCA-ACATTT---ACAATTCG-CTTGT-CTGTGCCC-------TTTTGT-T-AGCG-C-TGCCT-ACCATTTCA-A--T---AT--CGGTAGAC-GACA---TAGAGCTTGTTAAATTCAA------T--TTCT-C---TTA-TGTCTT---TCCTG-TT--A--TCTT--GAACAC-AAGTTAC-ACGTAAATGAA-AA--TATCC-T--CA------AAT-TGTATAT---A-A-C-AAC----------T--TA-ATT-CCC---AT-A-CA-ATATT------AAA----TC-A-ATCTC-AGT-TAT-C------AAT-----------CAA-AA-TTA----------------C-T----G------CAA---AA-------GAA---C-TA-AC---GT-----GTTATATTTG---TGCCCTTTT-TAGACTA-CT---A-----T-GAA-------------AATGGTTGTTCAC--AAACTATTTAACTTGCCA-AACG-------GACGCTATAAG-AGCATGT-CTT-TATTC--GGTCT-G-ACTCCAT-T-TG---AC-TTCGC-A-TCTT--------------T-C-ATAAG--ATA---T---TC-CGA-AT----AC---A-TAA-CATG-ATT------T-------GTAAG-GT----GTGGAGA-G-T-CAG-AT-C-TG-ATAAATCA
gi|6 : ATATACATTAT-TCTTGTG----TCCAA--TACTGGA-T---GTTGATAATGTGGACCTGAC-CACA-CTGA-TCTATT-CTATTA-TTT---CAC-TCGAA-TTAACTTAAGATGAAA-TAGTGTGT----TGT----TAGCTTGGC----ACCAAAGGATTCGT-CATTTA--CACT-GTATG-TA-ATTT-GT
gi|6 : -TC-TCCCTTT-ATGTGTTTTG--TATGTTTCTTTTATAATTAAATTACATTTGTTT-A-ACAGTATCAAAACATT-ACGAGAGATGAAA--C--A--GAGCA-A-ACTT---ACA-TTTG-CTCGT-CTCTCTCCGACGCTATTTTG----AGCGTA-TATCT-AT--------A--T---ATTCCGTTAGATAGACA---TA-AG--TGTTA--TTCTA------T--TTTT-CATATTA-TCTCTTTTTTTCTT-CC------CTT--GCTCCC-TC---TC-TGGCGAACCAACAACCTACCC-C--CACAAAAAAAT-CGTTTATTA-ATA-C-GAC----------T--TTTATT-CCCCATAT-A-TA-ATATATCATGCAAAC---TC-ACATCTCTA---TAT-CTAATCAAATTGCTATGGAAGCAA-AA-TTT----------------C-T----G------------AA-------AAA---T-CC-AC---GT-----GTTAT-TTTG---TGTCCTATT-CAGATTA-TC---ACCTTCT-G-A-------------CCTGGTTTTT--C--AAA-TGGTTGAC--G-------G-------GA----AAGAGAAGCATGT-CTCATAT-----ATAT-A-AT----T-C-TA---AC-TCCAT-A-TC-G--------------T-C-ATATG----ATT-T---TC-CGA-TT----AT---A-TCGTCATG-GTT------T-------GTCAG-AT----GTGGCGA-GTT-CAG-AT-C-TG-gtccgaatctgcctgctactagcacatagaggtatttttctccctttatgtgttttgtatgtttcttttataattaaattacatttgtttaacagtatcaaaacattacgagagatgaaacagagcaaacttacatttgctcgtctctctccgacgctattttgagcgtatatctatatattccgttagatagacataagtgttattctatttttcatattatctctttttttcttcccttgctccctctctggcgaaccaacaacctacccccacaaaaaaatcgtttattaatacgacttttattccccatatataatatatcatgcaaactcacatctctatatctaatcaaattgctatggaagcaaaatttctgaaaaatccacgtgttattttgtgtcctattcagattatcaccttctgacctggtttttcaaatggttgacgggaaagagaagcatgtctcatatatataattctaactccatatcgtcatatgattttccgattatatcgtcatggtttgtcagatgtggcgagttcagatctgac
gi|7 : atatacattattcttgtgtccaatactggatgttgataatgtggacctgaccacactgatctattctattatttcactcgaattaacttaagatgaaatagtgtgttgttagcttggcaccaaaggattcgtcatttacactgtatgtaatttgtgtccgaatctgcctgctactagcacatagaggtattttTATAAATTAT-TGTTA-C----T--GAC--GTTGA-------TTAA-A-TG-------GACACAAA-CTGACTGTATTGCTATTTGTTT---AACGTCGAA-T-GACTTATAAGAAAT-TAGTTGGT--TG---------------------GCAACGAATTCGT-C-TTCA-AGCCT-ATG-A-TAGATTT---AA--GAAGCTGATTTCAG-TGTGTGAT-T--TCG-----GCC------GTT------ACGTATTGCATC--AGCTG----TATAG-ACTTCGTCGC-ACG-GTACTT-TA-CGGTAGTT-TCCCTCTGAT---TT--G--T---TTTTTTTT-TA-TT---TTGCATTTGGT--ATACAATGTCAA--CATT-ATG------GAGG--CCTA--GGGCA-ACA--T---ACAACTTGTCTTGTGCTGTGCCC-------TTTTGT-TAAGCGGCTTGTCT-A-CATTTCAGA--TGCGAT--CGGTAGAC-GACAAGCTAGAGGTTGTT--ATTCAAAAGC--TCGTGCTGC---TTATTGTCGT---TCCTGTCT--AACTCTT--GAACAC-AAT--ACGACGTAATCGAA-AA---AT-C-T--CA------AA--TGTATAT---A-ACC-AATCG--------T--TG-ATT-CC-----T-A-TA-AGATC------AGAATATTCAA-ATATC-AGT-TATCC------AAT-----------CAATAA-TTA------------------T----G------CAA---AA-------GAA---C--A-ACG--GTGG---GTTA---TTG---TGCCCTTTT-TAGACc
gi|8 : tttag---TCCTG-TC--A--TCTT--GAACTC-AA---AT---GTAAATCAG-AA--CGTCC-CGCCA------A-----TATTTCCCA-A-C-ATC----------TATTA-A---CCT---AT-AACATATATA------AAA----TT-A-ATCT----T-TG---------AAG-----------CAA-AA-GT-------------------T----G------GAG---AA-------AAA---T-CC-AC---GT-----GTTATAT--G---TGCTGTATT-TAGATTAACCTTTA-----T-GACCTTTTTTTTTTTTAAT--TAGTT-A---AAACCATCAGACTTGACA-GACA-------GA----ATA-G-AGAATTT-CTC-TATTC--GATCT-G-ACTCCAT-C-TG---AC-TTCATGA-TCTG--------------T-C-TTATG----ATT-T---TC-CTATTT----AC---A-CGG-TATG-ATT------T-------GTCAG-ATGCACGTTGCGA-G-T-CAG-AT-CGTG--TAAAac
gi|9 : ------T--TTCT-C----------CTT---TCCTG-CC--A--TTTT--TAACTC-AA---AC-ACATGAATGGA-AA--TGT-C-T--CACC----AATATTTAT-C---A-A-C-ATC----------T--TA-ATT-CTC-----------ATATC------AAT----TT-A-ATCTC---TATAT-T------AAT-----------CTA-AA-TTA----------------CGTTGGAG------CAA---AAATTAGGGGAAAATC-T--AC---GT-----GTTAT
gi|9 : tcaacaaccttttTGTT-ATTTAAACCATCTGACTTGCCA-GACG-------GA----AT-AG-ATTATAT-CTC-TATTC--GATCT-T-ACTTTAT-T-Tttaaaccatctgacttgccagacggaatagattatatctctattcgatcttactttatttctgtcgtgtaaaatgtggcgagtcagatctcataa
gi|9 : tcaacaacctttttttctcctttcctgccatttttaactcaaacacatgaatggaaatgtctcaccaatatttatcaacatcttaattctcatatcaatttaatctctatattaatctaaattacgttggagcaaaaattaggggaaaatctacgCCAT-C-TG---AC-TTGCC-A-GACG--------------G-A-ATAGATTATATC-TCTATT-CGA-TC-----------TTA-CTTT-ATT------TCTGTCGTGTAAA-AT----GTGGCGA-G-T-CAG-AT-C-TC-ATAActgtcgtgtaaaatgtggcgagtcagatctcataa
12 sequences could not be aligned to this reference sequence:
Unaligned ( gi|12 ): CCCTGCTATTTTGAGCTCAGATATGAATCAAAATTTTCTCAACATCCTCATAACCATAATAGGTGTACATCAAATTACACTCTGCATTCTTTGAAGGAAACGTTTGGGGGAAAATCCACGTGTTTTTGTGCTGT
Unaligned ( gi|19 ): CTACGGAAGCACCATTGAGCCAGTTTATAGAAAGATATTTTTTTTATTGGTTTAAACGCATTAA
Unaligned ( gi|21 ): TTAACGCAATAATGTGCGTTTAATCCAATGAATTTGGCGTTTAAAATGCAAATA
Unaligned ( gi|22 ): TCTCTATTAATCTAAATTATAACTTTGGGGCAAAAGTTCAGGAAAAATCCAC
Unaligned ( gi|23 ): TACGGAAGGCCATTGAGGCCAGCACATGGAGAGATATTTTTTATTGCGT
Unaligned ( gi|24 ): ATGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNC
Unaligned ( gi|25 ): ACGGAAGCCCGTTGAGGCCAGGTTATAGAAAGATATTTTTATTGCGTT
Unaligned ( gi|28 ): ACGGAAGCCCATTGAGGCCAGTTTATAGAAGATATTTTTTTT
Unaligned ( gi|29 ): AATTTGCGAATTTTTATAATTATGTTTAAACGTTCAATATT
Unaligned ( gi|30 ): TACGGAAGCCCATTAAGGCCAGTACAAAGAGAGATATTTT
Unaligned ( gi|31 ): ACGGAAGCCCATTAAGGCCAGTACAAAGAGAGATATTTTT
Unaligned ( gi|33 ): CGGAAGCCCATTGAGGCCAGTTTATA