lowQualScore : 11111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111 11111111111111111111111111111111111111111111
lowQualScore : 4444444444444444444444444444 111 22222222222 55555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555 22222222222222 1111111 1111111111 1111111 11111111111 1111 1 22222222222222222222222222222222222222222222
lowQualScore : 8 3 4 1 4 1 2222222222222222222222222222 3 3 3 666 33333333333 6 99999 3 99999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999 3 3 77777777777777 3 3333333 3 444 2 6 7 6666 4444444444 555 5555555 99999999999 4 4 1111 7 5 3 5 7 00000000000000000000000000000000000000000000
lowQualScore : . . . . . . ............................ . . . ... ........... . ..... . ................................................................................................................................ . . .............. . ....... . ... . . . .... .......... ... ....... ........... . . .... . . . . . ............................................
lowQualScore : 8 1 0 4 0 6 4444444444444444444444444444 6 6 3 777 55555555555 7 11111 3 99999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999 6 6 77777777777777 3 1111111 3 777 9 3 3 1111 6666666666 888 2222222 00000000000 0 0 6666 0 0 7 7 3 00000000000000000000000000000000000000000000
consensus : TACAGTCTACTCCGGA-TATACTGAAA-TTCAGGGGACC--G-----ACC---TGAN-----TTGTT-C-ATTAT-AT-CCAAAG--TT-------CAATATAACT-----AATGTTG-A-N---C-CA-T---TAA--A------N--AATG--T--T---ACT--GAGGA-TTTAT----------TT----------TT-----------A-------C-------------A-G------ATAGTT-CAA-TATA---A--GC--G-A-CT-TCAATATA-------AGT-G---AC-TTCANT----ATA----------A---CAGATAGTT------CAAT-----------ATA-AG-TGACTT-CA-ATATAAG-TGGAG-TAGACTGTACTGTATAATTNNNNAANTAATGAATATCT--GTTTGATTGACAGTCATTTC
Reference ( gi|2 ) : TACAGTGTACTCTGGA-TATACTGAAA-TTCAGGGGATG--G-----ACC---CGAC-----TTGTT-C-ATTAT-AT-GTAAAG--CT-------CAATATAACT-----AATGTTG-A-C---C-TA-T---TAA--A------A--AATA--T--T---ACT--GGAGA-TCTAT----------TT----------TT-----------A-------C-------------A-G------GTAGTT-CAA-TATA---A--GC--A-T-CT-TCAATATA-------AGT-G---AC-TCCACT----ATA----------A---CAGATAGTC------CAAT-----------ATA-AG-TGACTT-CA-ATAAAAG-TGGGG-TAAACTGTAATTT----TTTGAAAAAT--TGAATATCTAAGATTTATTTCCGCTCATTTCAGCTTCAGT
gi|7 : TACAGTCCACTCCAGA-TATATTGAAAATTCAGGGGACT--G-----ACC---TGAA-----GTGTT-C-AATGT-AT-CCAAAG--ATAGGAAAACTATGTAAAT-----AATGTT-----------------TAA---------------------T---ACT--GAGGA-TTTAC----------TT----------TT-----------T-------C-------------A-C----------CT-CAA-TATG---ACAGA--A-G-GT-TCAATATA-------AGT-G---AC-CTCTGT----ATA----------A---
gi|1 : TACAGTCAACCCCAGA-TATACTGAAA-TTAATGAGATC--A-----ACC---TCAA-----GTGTT-CAAATAT-AT-CCAAAG--TT-------TAATTTAACC-----AATGTTG-A-A---C-TA-TA--TAA--A------------G--T--C---A------GGG-TTTAA----------TT----------TTGCTTTGACATAA-------C-------------A-G------ATAGTT-CGA-CATG---A--AT--G-A-CC-TCAATATA-------AG--G---------AGN----ATA----------AAGTCAG--GGTT------TAATTTTGCTTTGACATG-AA-TGACCT-CA-ATATAAG-GGAAG-AAGACTGTA---T----TTACCAAAGT--TAA--ATCT--GTTTGATTGACAGTCATTTCgtggagtggactgta
gi|11 : cTACAGTCTACCC-AGA-TATATTGAAA-TTCA----ACA--------ACC---TGAT-----TTCTT-C-ATTAT-AT-CCAAAG--TC-------CAAAATGACC-----AATATTG-AGC---C-AA-A---TGA--A------T--AATG-----T---ACA--AGGGA-TTTAT----------TT----------Tcagtc
gi|15 : TACAGTTTACTCCAGA-AATATTGAAA-TTCAGATGACC--A-----TCC---TGAA-----TTGTT-T-ATTAT-GTCAT-AGG--TT-------CAATTAAAGT-----GATGTTG-A-c
gi|16 : TACAGTCTAC-CTGGA-TATATTGAAA-TTCAAGGGACC--G-----AAC---TATC-----TTG---A-ATTAG-AT-ATAA
gi|5 : CAGTGTACTCTGGAATTTACTGAAA-TTCTGGG--TG--ACTCCAACT---TGAC-----TTGTT-C-ATTAT-AT-CCAAAGTTCT-------CACTA-AACT-----AG-GT-----------------------A------A--ATTC--TGAT---ACT--GAGAA-TTTAC----------TT----------TT-----------A-------CTCACCTGGACAATA-G------ATACTG-CAA-TATA---A--GTTGA-C-TT-CCAATATG-------AGg
gi|4 : AGTTTACTCCAGA-TAATCTGAAA-TTCAGG---TC--G-------C---CGGCATTAATTCTT-C-ATCAT-AT-CCAAAG--TA-------CAATATAACT-----GATGTTG-A-A---C-CA-TTTATAA--A------T--AATG--G--T---ACTGGGGAGA-TATAT----------TCACTTCCAGTATC-----------A-------C-------------A-G------ACAGTT-CAG-TTTA---A--GC--A-A-CT-TCCAGGGA-------AGT-G---atgcagtagactgtattct
gi|8 : GTGTACTCTGGA--ATACTGAAA-TTCTGGG--T---G-----ACCAATTGAC-----TTGTT-C-ATTAT-AT-CCAAAGTTCT-------CACTA-AACTAGGTAAATTCTG-A-------TACT---TGA--G------A--ATTACTT--T---ACT--CATGA--CAAT---------------------------------------------------------A-G------ATA-CT-CAATTATA---A--GT--G-A-CT-TCCATATATGAGATGAGT-G---AC-Tgaatagaatactgtata
gi|9 : acTACTCTGGA-TACACTGA---------GGAAGCCG-----ATC---TGAA-----TTGTT-C-ATTAT-AT-TTAAAG--TT-------CAATATAACC-----GATGTCA-A-A---C-CA-TA--TAT--A------ATTAAAG--C--T---ACT--GAGGA-TTTAT--------------------------------------------------------------------AA---CAA-TATT---A--GC--A-A-CT-TCAATAGA-------AGT-g
gi|3 : cgtatggtaagaataatc-TATA-TCAAA-TCCAGAGGGTC--A-----AGT---CAA------TTGTTTC-ATT-------CAAAT--AT-------TGATATAACC-----AATGTTGGA-C---CATA-TA--CAAGTA------AT-AATA--T--T---ACT--GGAAAATTTAC----------TT----------TT-----------A-------CTTTCAAAATATA-ACG------GTAATTTCAC-TATA---A--GT--AAT-TT-TCATTAAA-------AGT-GGGGAT-AACAGT----ATA----------A---GAGATAGTT------CGCT-----------ATA-AG-TGACTT-TA-GTATAAG-TGGAGTTAGGCTGTA
gi|10 : catGTT-C-ACTAT-AT-CAAAAG--TT-------TAATATAGCT-----AATGTTA-A-T---C-CA-T---TAA--A------CT-AATA--C--T---ACT--CAGGA-TTTAT----------TT----------TT-----------A-------T--------------------------TT-CAA-TAGAATTA--AC--A-G-ATATAGATATG-------AGT-G---AC-TCCAAT----ATtt
gi|6 : aTATGAT-GTGAAGG-CT-------AAGCA-AATT-----AACTTTG-A-TGTAC-TG-T---GAA--ATAAGATA--AATA--A--TGCAACT--GGGGA-TTTATATATATAGTTTC----------TT-----------AAATATAAC-------------A-G------ACAGTT-CAA-TATG---A--AT--G-A-CT-T--ATATA-------AGT-G---AC-TTCAAT----AAA----------A---CAGACAGTT------CAGT-----------GTA-AG-TGACTcagtggaaaa
gi|13 : atttgctttaagcATGTTG-A-A---C-CA-CG--TAA--A------T--AATG--T--T---ACT--GAGGA-TTTAT----------TT----------TTACTTCAATATAA-------C-------------A-GATAGTCGTAGTT-CAA-TATAT--A--GC--A-A-CT-TCAATATA-------AGTGG---AG-TACACT----GT
gi|14 : --T---ACT--GAGAA-TTTAC----------TT----------TT-----------A-------C--------------------------TT-CAC-TACA---ATAG---A-TACT-TCAATATA-------AGT-G---ACTTCCAAT----ATG----------A---
gi|12 : aaactaggtaaattctga-TCAATATA-------AGT-G---GT-TACACT----GTATTTCAGTACAA---CAGATAGTT------AAAT-----------GTT-AG-TGACTT-CGTATATTAG-TGGGG-TAGGCTGTACTGTATAATTTGATAACTAATGAATgtgcagtagactgtattct
gi|6 : ATATAT------AGT-T---TC-TTAAAT----ATA----------A---CAGACAGTT------CAAT-----------ATG-AA-TGACTT----ATATAAG-TGttg
gi|7 : atttgctttaagctatgatgtgaaggctaagcaaattaactttgatgtactgtgaaataagataaataatgcaactggggatttat---AC-CTCAAT----ATG----------A---CAGAAGGTT------CAAT-----------ATA-AG-TGACCT-CT-GTATAAG-TGGAG-TGGACTGTAacttcaataaaacagacagttcagtgtaagtgact
gi|8 : tacagtccactccagatatattgaaaattcaggggactgacctgaagtgttcaatgtatccaaagataggaaaactatgtaaataatgtttaatactgaggatttactttttc---AC-TTTACTCATGACA----------A---TAGATACTC------AATT-----------ATA-AG-TGACTT-CC-ATA
gi|14 : acgtgtactctggaatactgaaattctgggtgaccaattgacttgttcattatatccaaagttctcactaaactaggtaaattctgatacttgagaatt---AC-TTCACT----ACA----------A---TAGATACTT------CAAT-----------ATA-AG-TGACTTCCA-ATATGAG-TGCAG-TAGACTGTAtatgagatgagtgactg
gi|13 : aaactaggtaaattctgatactgagaatttactttt---AC-TTCAAT----ATA----------A---CAGATAGTCGTAGTTCAAT-----------ATATAG-CAACTT-CA-ATATAAG-TGGAG-TACACTGTttct
gi|5 : atgttgaaccacgtaaataatgttactgaggatttattttt----ACA----------A---TAGATACTG------CAAT-----------ATA-AGTTGACTTCCA-ATATGAGATGCAG-TAGACTGTA
1 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|17 ): GTAAAACATTAATTCTCTGTGTATTATTATAGTAGTGG
Alignments
lowQualScore : 22222 11111 9999999999999999999999999999999999999999999999999999999999999 11111 11111111 3333333333333333333333 22222222222 1 44444444 2222 22
lowQualScore : 0 2 3 0 3 7 55 0 1 3 3 1 0 2 3 55555 77777 44 22222 3 3 888888 0000000000000000000000000000000000000000000000000000000000000 77 6666 11111 6 00000000 1 5555555555555555555555 44 3 777 3 11111111111 4 4 0 5 5 5 77777777 4444 4444 7 77 4 2 55 2
lowQualScore : . . . . . . .. . . . . . . . . ..... ..... .. ..... . . ...... ............................................................. .. .... ..... . ........ . ...................... .. . ... . ........... . . . . . . ........ .... .... . .. . . .. .
lowQualScore : 7 3 6 4 6 3 00 5 0 6 6 3 1 3 6 55555 77777 11 66666 1 1 888888 5555555555555555555555555555555555555555555555555555555555555 33 5555 88888 2 11111111 1 5555555555555555555555 33 0 888 7 11111111111 4 4 0 0 0 0 55555555 0000 3333 3 55 0 5 55 5
consensus : TACAGTCTACTCCGGA-TATACTGAAA-TTCAGGG-GAC--CGACCTGANTTGTT-CAT-TATATCCAAAGTTCAATATAACTAATGTTGAACC-A-T---TA-----AA-TAATGN----TAC-TG-AGG------ATTTAC----------TT------T--T-----------A-------C-------------AGATAGTTCAA--TA----TAA--G-CGACTT-CAATATA-------AGTGACTT-------------------CAGTATAA---CAGATAGTTCAAT-----------ATA-AG-TGACTT-CA-ATATAAG-TGGAG-TAGACTGTATT-T----TTTGANAA-TAGTGAATATCTAAGNTTNATTNNCGNTCATTTC
Reference ( family-226 ) : TACAGTCTACTCCGGA-TATACTGAAA-TTCAGGG-GAC--CGACCTGANTTGTT-CAT-TATATCCAAAGTTCAATATAACTAATGTTGANCC-A-T---TA-----AA-NAATGT----TAC-TG-AGG------ATTTAT----------TT------T--T-----------A-------C-------------AGATAGTTCAA--TA----TAA--G-CGACTT-CAATATA-------AGTGACTT-------------------CANTATAA---CAGATAGTTCAAT-----------ATA-AG-TGACTT-CA-ATATAAG-TGGAG-TAGACTGTACTGTATAATTNNNNAANTAATGAATATCT--GTTTGATTGACAGTCATTTC
gi|1 : TACAGTCAACCCCAGA-TATACTGAAA-TTAATGA-GAT--CAACCTCAAGTGTT-CAAATATATCCAAAGTTTAATTTAACCAATGTTGAACT-A-T-----------A-TAAAGT----CA------GG------GTTTAA----------TT------T--TGCTTTGACATAA-------C-------------AGATAGTTCGA--CA----TGA--A-TGACCT-CAATATA-------AG-GA------------------------GNATAAAGTCAGG--GTTTAATTTTGCTTTGACATG-AA-TGACCT-CA-ATATAAG-GGAAG-AAGACTGTA--------TTTACCAA--AGTTAA-ATCT--GTTTGATTGACAGTCATTTC
gi|10 : cGTT-CAC-TATATCAAAAGTTTAATATAGCTAATGTTAATCC-A-T---TA-----AACTAATAC----TAC-TC-AGG------ATTTAT----------TT------T--T-----------A-------T-------------------TTCAA--TAGAATTAA--C-AGATAT-AGATATG-------AGTGACTC-------------------CAATATcagtc
gi|11 : aTACAGTCTAC-CCAGA-TATATTGAAA-TTCAA--------CAACCTGATTTCTT-CAT-TATATCCAAAGTCCAAAATGACCAATATTGAGCCAA-A---TG-----AA-TAATG-----TAC-AA-GGG------ATTTAT----------TT------T--cagtggaaaa
gi|12 : TCAA--TA----TAA--G-TGGTTA-CACTGT------------ATTT-------------------CAGTACAA---CAGATAGTTAAAT-----------GTT-AG-TGACTT-CGTATATTAG-TGGGG-TAGGCTGTACTGTATAATTTGATAACTAATGAATc
gi|13 : ATGTTGAACC-A-CG--TA-----AA-TAATGT----TAC-TG-AGG------ATTTAT----------TT------T--T-----------A-------C-------------------TTCAA--TA----TAA-----------CAG-ATA-------G------T-------------------C-GTA------------GTTCAAT-----------ATATAG-CAACTT-CA-ATATAAG-TGGAG-TACACTGTttg
gi|14 : ---TA-----AA-TTCTGA----TAC-TG-AGA------ATTTAC----------TT------T--T-----------A-------CTTCACTACAAT--AGATACTTCAA--TA----TAA--G-TGACTTCCAATATG-------AGTG
gi|14 : aaactaggACTT-------------------CACTACAA---TAGATACTTCAAT-----------ATA-AG-TGACTTCCA-ATATGAG-TGCAG-TAGACTGTATTcagtagactgtattct
gi|15 : aaactaggtaaattctgatactgagaatttacttttTACAGTTTACTCCAGA-AATATTGAAA-TTCAGAT-GAC--CATCCTGAATTGTT-TAT-TATGTCATAGGTTCAATTAAAGTGATGTTGAct
gi|16 : TACAGTCTAC-CTGGA-TATATTGAAA-TTCAAGG-GAC--CGAACTATCTTG
gi|2 : TACAGTGTACTCTGGA-TATACTGAAA-TTCAGGG-GAT--GGACCCGACTTGTT-CAT-TATATGTAAAGCTCAATATAACTAATGTTGACCT-A-T---TA-----AA-AAATAT----TAC-TG-GAG------ATCTAT----------TT------T--T-----------A-------C-------------AGGTAGTTCAA--TA----TAA--G-CATCTT-CAATATA-------AGTGACTC-------------------CACTATAA---CAGATAGTCCAAT-----------ATA-AG-TGACTT-CA-ATAAAAG-TGGGG-TAAACTGTAATTT----TTTGAAAAAT--TGAATATCTAAGATTTATTTCCGCTCATTTCaattagatataag
gi|3 : -TATA-TCAAA-TCCAGAG-GGT--CAAG-TCAATTGTTTCAT-T-----CAAATATTGATATAACCAATGTTGGACC-A-TA--TACAAGTAA-TAATAT----TAC-TGGAAA------ATTTAC----------TT------T--T-----------A-------C----------------T--TTCAAAATA----TAACGG-TAATTT-CACTATA-------AGTAATTTTCATTAAAAGTGGGGATAACAGTATAA---GAGATAGTTCGCT-----------ATA-AG-TGACTT-TA-GTATAAG-TGGAGTTAGGCTGTATTagcttcagt
gi|4 : catAGTTTACTCCAGA-TAATCTGAAA-TTCAGGT-CGC--CGGCATTAATTCTT-CAT-CATATCCAAAGTACAATATAACTGATGTTGAACC-A-TTTATA-----AA-TAATGG----TAC-TG-GGGAGATATATTCAC----------TTCCAGTAT--C-----------A-------C-------------AGACAGTTCAG--TT----TAA--G-CAACTT-CCAGGGA-------AGTG
gi|5 : CAGTGTACTCTGGAATTTACTGAAA-TTCTGGGTGACTCCAACTTGACTTGTT-CAT-TATATCCAAAGTTC----TCACTA------AACT-AGG---TA-----AA-TTCTGA----TAC-TG-AGA------ATTTAC----------TT------T--T-----------A-------CTCACCTGGACAATAGATACTGCAA--TA----TAA--GTTGACTTCCAATATG-------AGgaatagaatactgtata
gi|5 : ACAA---TAGATACTGCAAT-----------ATA-AGTTGACTTCCA-ATATGAGATGCAG-TAGACTGTATTatgcagtagactgtattct
gi|6 : cagtgtactctggaatttactgaaattctgggtgactccaacttgacttgttcattatatccaaagttctcactaaactaggtaaattctgatactgagaatttacttttactcacctgg---TA-----AA-TAATGC----AAC-TG-GGG------ATTTATATATATAGTTTC------T--T-----------AAATATAAC-------------AGACAGTTCAA--TA----TGA--A-TGACTT---ATATA-------AGTGACTT-------------------CAATAAAA---CAGACAGTTCAGT-----------GTA-AG-TGACTct
gi|7 : atttgctttaagctatgatgtgaaggctaagcaaattaactttgatgtactgtgaaataagaTACAGTCCACTCCAGA-TATATTGAAAATTCAGGG-GAC--TGACCTGAAGTGTT-CAA-TGTATCCAAAGAT-AGGAAAACT-ATG--------------TA-----AA-TAATGTTTAATAC-TG-AGG------ATTTAC----------TT------T------------------------------------------TTC-------------------ACCT-CAATA-----------------------------------------TGA---CAGAAGGTTCAAT-----------ATA-AG-TGACCT-CT-GTATAAG-TGGAG-TGGACTGTA
gi|8 : GTGTACTCTGGA--ATACTGAAA-TTCTGGGTGAC--CAA-TTGACTTGTT-CAT-TATATCCAAAGTTC----TCACTA------AACT-AGG---TA-----AA-TTCTGA----TACTTG-AGA------A-TTAC----------TT------TACTCATGACA----A-------T-------------AGATA-CTCAAT-TA----TAA--G-TGACTT-CCATATATGAGATGAGTGACT
gi|9 : acATAATCTACTCTGGA-TACACTGA-------GGA-AGC--CGATCTGAATTGTT-CAT-TATATTTAAAGTTCAATATAACCGATGTCAAACC-A-TATATA-----AT-TAAAGC----TAC-TG-AGG------ATTTAT-----------------------------------------------------------AA--CAA--TA----TTA--G-CAACTT-CAATAGA-------AGTg
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|17 ): GTAAAACATTAATTCTCTGTGTATTATTATAGTAGTGG
Alignments
lowQualScore : 22222 11111 99999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999 22222222222 3333333333333333 11
lowQualScore : 0 2 3 0 3 7 55 0 1 3 3 3 0 1 3 66666 77777 3 11111 3 3 888888 77777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777 11 777 1 11111111111 4 5 5 5 5 4444444444444444 3 7 88 1 1 22 1
lowQualScore : . . . . . . .. . . . . . . . . ..... ..... . ..... . . ...... .......................................................................................................................... .. ... . ........... . . . . . ................ . . .. . . .. .
lowQualScore : 7 3 6 4 6 3 00 5 0 6 6 5 1 2 6 44444 77777 1 66666 1 1 888888 11111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111 33 888 9 11111111111 4 0 0 7 7 9999999999999999 7 3 55 0 0 00 0
consensus : TACAGTCTACTCCGGA-TATACTGAAA-TTCAGGG-GAC--CGACCTGANTTGTT-C-ATTATATCCAAAGTTCAATATAACTAATGTTGAACC-A-T---TA-----AA-TAATG----NTAC-TG-AGG------ATTTA------------CTT------T--T-----------AC-------------AGATAGTTCAA--TATAA--G-CGACTT-CAATATA-------AG-TGACTT-------------------CAGTATAA---CAGATAGTTCAAT-----------ATA-AGTGACTT-CA-ATATAAGTGGAG-TAGACTGT-ATT-T----TTTGANAA--ANTGAATATCTAAGNTTNATTNNCGNTCATTTC
Reference ( family-226 ) : TACAGTCTACTCCGGA-TATACTGAAA-TTCAGGG-GAC--CGACCTGANTTGTT-C-ATTATATCCAAAGTTCAATATAACTAATGTTGAACC-A-T---TA-----AA-TAATG----NTAC-TG-AGG------ATTTA------------CTT------T--T-----------AC-------------AGATAGTTCAA--TATAA--G-CGACTT-CAATATA-------AG-TGACTT-------------------CAGTATAA---CAGATAGTTCAAT-----------ATA-AGTGACTT-CA-ATATAAGTGGAG-TAGACTGT-ATT-T----TTTGANAA-TAGTGAATATCTAAGNTTNATTNNCGNTCATTTC
gi|1 : TACAGTCAACCCCAGA-TATACTGAAA-TTAATGA-GAT--CAACCTCAAGTGTT-CAAATATATCCAAAGTTTAATTTAACCAATGTTGAACT-A-T-----------A-TAA--------AG-TC-AGG------GTTTA------------ATT------T--TGCTTTGACATAAC-------------AGATAGTTCGA--CATGA--A-TGACCT-CAATATA-------AG--G------------------------AGNATAAAGTCAG--GGTTTAATTTTGCTTTGACATG-AATGACCT-CA-ATATAAGGGAAG-AAGACTGT-ATT-T--------ACCA-AAGTTAA-ATCT--GTTTGATTGACAGTCATTTC
gi|10 : cGTT-C-ACTATATCAAAAGTTTAATATAGCTAATGTTAATCC-A-T---TA-----AACTAATA----CTAC-TC-AGG------ATTTA------------TTT------T------------------------------------------TAT----------TT-CAATA-------------GAATT-------------------------AA---CAGATA--TAGAT-----------ATG-AGTGACTC-CA-ATATCAGTGGAcagtc
gi|11 : aTACAGTCTAC-CCAGA-TATATTGAAA-TTCAA--------CAACCTGATTTCTT-C-ATTATATCCAAAGTCCAAAATGACCAATATTGAGCCAA-A---TG-----AA-TAATG-----TAC-AA-GGG------ATTTA------------TTT------T--aaa
gi|12 : TCAA--TATAA--G-TGGTTA-CACTGT-------------ATTT-------------------CAGTACAA---CAGATAGTTAAAT-----------GTT-AGTGACTT-CGTATATTAGTGGGG-TAGGCTGT-ACTGTATAATTTGATAACTAATGAATc
gi|13 : ATGTTGAACC-A-CG--TA-----AA-TAATG----TTAC-TG-AGG------ATTTA------------TTT------T--T-----------AC-------------------TTCAA--TATAA-----------------------------------------------------CAG-ATAG---TCG-TAGTTCAAT-----------ATATAGCAACTT-CA-ATATAAGTGGAG-TACACTGT-ttg
gi|14 : ---TA-----AA-TTCTG----ATAC-TG-AGA------ATTTA------------CTT------T--T-----------ACTTCACTACAAT--AGATACTTCAA--TATAA--G-TGACTTCCAATATG-------AG-TG-----------------------CAGTA
gi|14 : aaactaggACTT-------------------CACTACAA---TAGATACTTCAAT-----------ATA-AGTGACTTCCA-ATATGAGTGCAG-TAGACTGT-ATT-C----Tgactgtattct
gi|15 : aaactaggtaaattctgatactgagaatttacttttTACAGTTTACTCCAGA-AATATTGAAA-TTCAGAT-GAC--CATCCTGAATTGTT-T-ATTATGTCATAGGTTCAATTAAAGTGATGTTGA
gi|16 : TACAGTCTAC-CTGGA-TATATTGAAA-TTCAAGG-GAC--CGAACTATCTTG
gi|2 : TACAGTGTACTCTGGA-TATACTGAAA-TTCAGGG-GAT--GGACCCGACTTGTT-C-ATTATATGTAAAGCTCAATATAACTAATGTTGACCT-A-T---TA-----AA-AAATA----TTAC-TG-GAG------ATCTA------------TTT------T--T-----------AC-------------AGGTAGTTCAA--TATAA--G-CATCTT-CAATATA-------AG-TGACTC-------------------CACTATAA---CAGATAGTCCAAT-----------ATA-AGTGACTT-CA-ATAAAAGTGGGG-TAAACTGTAATT-T----TTTGAAAA--ATTGAATATCTAAGATTTATTTCCGCTCATTTCaattagatataag
gi|3 : -TATA-TCAAA-TCCAGAG-GGT--CAAG-TCAATTGTTTC-ATT-----CAAATATTGATATAACCAATGTTGGACC-A-TA--TACAAGTAA-TAATA----TTAC-TGGAAA------ATTTA------------CTT------T--T-----------AC----------------T--TTCAAAATATAACGG-TAATTT-CACTATA-------AG-TAATTTTCATTAAAAGTGGGGATAACAGTATAA---GAGATAGTTCGCT-----------ATA-AGTGACTT-TA-GTATAAGTGGAGTTAGGCTGT-ATT-agcttcagt
gi|4 : catAGTTTACTCCAGA-TAATCTGAAA-TTCAGGT-CGC--CGGCATTAATTCTT-C-ATCATATCCAAAGTACAATATAACTGATGTTGAACC-A-TTTATA-----AA-TAATG----GTAC-TG-GGGAGATATATTCA------------CTTCCAGTAT--C-----------AC-------------AGACAGTTCAG--TTTAA--G-CAACTT-CCAGGGA-------AG-TG
gi|5 : CAGTGTACTCTGGAATTTACTGAAA-TTCTGGGTGACTCCAACTTGACTTGTT-C-ATTATATCCAAAGTTC----TCACTA------AACT-AGG---TA-----AA-TTCTG----ATAC-TG-AGA------ATTTA------------CTT------T--T-----------ACTCACCTGGACAATAGATACTGCAA--TATAA--GTTGACTTCCAATATG-------AGATG-----------------------CAGTAgaatagaatactgtata
gi|6 : ---TA-----AA-TAATG----CAAC-TG-GGG------ATTTATATATATAGTTTCTTAAATA-T--A-----------AC-------------AGACAGTTCAA--TATGA--A-TGACTT---ATATA-------AG-TGACTT-------------------CAATAAAA---CAGACAGTTCAGT-----------GTA-AGTGACTgactgtattct
gi|7 : atttgctttaagctatgatgtgaaggctaagcaaattaactttgatgtactgtgaaataagaTACAGTCCACTCCAGA-TATATTGAAAATTCAGGG-GAC--TGACCTGAAGTGTT-C-AATGTATCCAAAG----ATAGGA--------AAACT-A-TG--TA-----AA-TAATGTTTAATAC-TG-AGG------ATTTA------------CTT------T-----------------------------------TTC---------------ACCT-CAATA------------------------------------------TGA---CAGAAGGTTCAAT-----------ATA-AGTGACCT-CT-GTATAAGTGGAG-TGGACTGT-A
gi|8 : GTGTACTCTGGA--ATACTGAAA-TTCTGGGTGAC--CAA-TTGACTTGTT-C-ATTATATCCAAAGTTC----TCACTA------AACT-AGG---TA-----AA-TTCTG----ATACTTG-AGA------A-TTA------------CTT------TACTCATGACA----AT-------------AGATA-CTCAAT-TATAA--G-TGACTT-CCATATATGAGATGAG-TGACT
gi|9 : acATAATCTACTCTGGA-TACACTGA-------GGA-AGC--CGATCTGAATTGTT-C-ATTATATTTAAAGTTCAATATAACCGATGTCAAACC-A-TATATA-----AT-TAAAG----CTAC-TG-AGG------ATTT------------------------------------------------------ATAA--CAA--TATTA--G-CAACTT-CAATAGA-------AG-Tg
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|17 ): GTAAAACATTAATTCTCTGTGTATTATTATAGTAGTGG
Alignments
lowQualScore : 22222 11111 99999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999 22222222222 333333 11 11
lowQualScore : 0 2 3 0 3 7 55 0 1 3 3 3 0 1 3 66666 77777 3 11111 3 3 888888 77777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777 11 777 1 11111111111 4 5 5 5 5 3 000000 1 88 1 7 88 1 1 22 1
lowQualScore : . . . . . . .. . . . . . . . . ..... ..... . ..... . . ...... .......................................................................................................................... .. ... . ........... . . . . . . ...... . .. . . .. . . .. .
lowQualScore : 7 3 6 4 6 3 00 5 0 6 6 5 1 2 6 44444 77777 1 66666 1 1 888888 11111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111 33 888 9 11111111111 4 0 0 7 7 8 000000 0 33 0 3 55 0 0 00 0
consensus : TACAGTCTACTCCGGA-TATACTGAAA-TTCAGGG-GAC--CGACCTGANTTGTT-C-ATTATATCCAAAGTTCAATATAACTAATGTTGAACC-A-T---TA-----AA-TAATG----NTAC-TG-AGG------ATTTA------------CTT------T--T-----------AC-------------AGATAGTTCAA--TATAA--G-CGACTT-CAATATA-------AG-TGACTT-------------------CAGTATAA---CAGATAGTTCAAT-----------ATA-AGTGACTT-CA-ATATAAGTGGAG-TAGACTGT-ATT-T----TTTGANAA--ANTGAATATCTAAGNTTNATTNNCGNTCATTTC
Reference ( family-226 ) : TACAGTCTACTCCGGA-TATACTGAAA-TTCAGGG-GAC--CGACCTGANTTGTT-C-ATTATATCCAAAGTTCAATATAACTAATGTTGAACC-A-T---TA-----AA-TAATG----NTAC-TG-AGG------ATTTA------------CTT------T--T-----------AC-------------AGATAGTTCAA--TATAA--G-CGACTT-CAATATA-------AG-TGACTT-------------------CAGTATAA---CAGATAGTTCAAT-----------ATA-AGTGACTT-CA-ATATAAGTGGAG-TAGACTGT-ATT-T----TTTGANAA--ANTGAATATCTAAGNTTNATTNNCGNTCATTTC
gi|1 : TACAGTCAACCCCAGA-TATACTGAAA-TTAATGA-GAT--CAACCTCAAGTGTT-CAAATATATCCAAAGTTTAATTTAACCAATGTTGAACT-A-T-----------A-TAA--------AG-TC-AGG------GTTTA------------ATT------T--TGCTTTGACATAAC-------------AGATAGTTCGA--CATGA--A-TGACCT-CAATATA-------AG--G------------------------AGNATAAAGTCAG--GGTTTAATTTTGCTTTGACATG-AATGACCT-CA-ATATAAGGGAAG-AAGACTGT-A--------TTTACCAA--AGTTAA-ATCT--GTTTGATTGACAGTCATTTC
gi|10 : cGTT-C-ACTATATCAAAAGTTTAATATAGCTAATGTTAATCC-A-T---TA-----AACTAATA----CTAC-TC-AGG------ATTTA------------TTT------T------------------------------------------TAT----------TT-CAATA-------------GAATT-------------------------AA---CAGATA--TAGAT-----------ATG-AGTGACTC-CA-ATATCAGTGGAcagtc
gi|11 : aTACAGTCTAC-CCAGA-TATATTGAAA-TTCAA--------CAACCTGATTTCTT-C-ATTATATCCAAAGTCCAAAATGACCAATATTGAGCCAA-A---TG-----AA-TAATG-----TAC-AA-GGG------ATTTA------------TTT------T--aaa
gi|12 : TCAA--TATAA--G-TGGTTA-CACTGT-------------ATTT-------------------CAGTACAA---CAGATAGTTAAAT-----------GTT-AGTGACTT-CGTATATTAGTGGGG-TAGGCTGT-ACTGTATAATTTGATAACTAATGAATc
gi|13 : ATGTTGAACC-A-CG--TA-----AA-TAATG----TTAC-TG-AGG------ATTTA------------TTT------T--T-----------AC-------------------TTCAA--TATAA-----------------------------------------------------CAG-ATAG---TCG-TAGTTCAAT-----------ATATAGCAACTT-CA-ATATAAGTGGAG-TACACTGT-ttg
gi|14 : ---TA-----AA-TTCTG----ATAC-TG-AGA------ATTTA------------CTT------T--T-----------ACTTCACTACAAT--AGATACTTCAA--TATAA--G-TGACTTCCAATATG-------AG-TG-----------------------CAGTA
gi|14 : aaactaggACTT-------------------CACTACAA---TAGATACTTCAAT-----------ATA-AGTGACTTCCA-ATATGAGTGCAG-TAGACTGT-ATT-C----Tgactgtattct
gi|15 : aaactaggtaaattctgatactgagaatttacttttTACAGTTTACTCCAGA-AATATTGAAA-TTCAGAT-GAC--CATCCTGAATTGTT-T-ATTATGTCATAGGTTCAATTAAAGTGATGTTGA
gi|16 : TACAGTCTAC-CTGGA-TATATTGAAA-TTCAAGG-GAC--CGAACTATCTTG
gi|2 : TACAGTGTACTCTGGA-TATACTGAAA-TTCAGGG-GAT--GGACCCGACTTGTT-C-ATTATATGTAAAGCTCAATATAACTAATGTTGACCT-A-T---TA-----AA-AAATA----TTAC-TG-GAG------ATCTA------------TTT------T--T-----------AC-------------AGGTAGTTCAA--TATAA--G-CATCTT-CAATATA-------AG-TGACTC-------------------CACTATAA---CAGATAGTCCAAT-----------ATA-AGTGACTT-CA-ATAAAAGTGGGG-TAAACTGTAATT-T----TTTGAAAA--ATTGAATATCTAAGATTTATTTCCGCTCATTTCaattagatataag
gi|3 : -TATA-TCAAA-TCCAGAG-GGT--CAAG-TCAATTGTTTC-ATT-----CAAATATTGATATAACCAATGTTGGACC-A-TA--TACAAGTAA-TAATA----TTAC-TGGAAA------ATTTA------------CTT------T--T-----------AC----------------T--TTCAAAATATAACGG-TAATTT-CACTATA-------AG-TAATTTTCATTAAAAGTGGGGATAACAGTATAA---GAGATAGTTCGCT-----------ATA-AGTGACTT-TA-GTATAAGTGGAGTTAGGCTGT-ATT-agcttcagt
gi|4 : catAGTTTACTCCAGA-TAATCTGAAA-TTCAGGT-CGC--CGGCATTAATTCTT-C-ATCATATCCAAAGTACAATATAACTGATGTTGAACC-A-TTTATA-----AA-TAATG----GTAC-TG-GGGAGATATATTCA------------CTTCCAGTAT--C-----------AC-------------AGACAGTTCAG--TTTAA--G-CAACTT-CCAGGGA-------AG-TG
gi|5 : CAGTGTACTCTGGAATTTACTGAAA-TTCTGGGTGACTCCAACTTGACTTGTT-C-ATTATATCCAAAGTTC----TCACTA------AACT-AGG---TA-----AA-TTCTG----ATAC-TG-AGA------ATTTA------------CTT------T--T-----------ACTCACCTGGACAATAGATACTGCAA--TATAA--GTTGACTTCCAATATG-------AGATG-----------------------CAGTAgaatagaatactgtata
gi|6 : ---TA-----AA-TAATG----CAAC-TG-GGG------ATTTATATATATAGTTTCTTAAATA-T--A-----------AC-------------AGACAGTTCAA--TATGA--A-TGACTT---ATATA-------AG-TGACTT-------------------CAATAAAA---CAGACAGTTCAGT-----------GTA-AGTGACTgactgtattct
gi|7 : atttgctttaagctatgatgtgaaggctaagcaaattaactttgatgtactgtgaaataagaTACAGTCCACTCCAGA-TATATTGAAAATTCAGGG-GAC--TGACCTGAAGTGTT-C-AATGTATCCAAAG----ATAGGA--------AAACT-A-TG--TA-----AA-TAATGTTTAATAC-TG-AGG------ATTTA------------CTT------T-----------------------------------TTC---------------ACCT-CAATA------------------------------------------TGA---CAGAAGGTTCAAT-----------ATA-AGTGACCT-CT-GTATAAGTGGAG-TGGACTGT-A
gi|8 : GTGTACTCTGGA--ATACTGAAA-TTCTGGGTGAC--CAA-TTGACTTGTT-C-ATTATATCCAAAGTTC----TCACTA------AACT-AGG---TA-----AA-TTCTG----ATACTTG-AGA------A-TTA------------CTT------TACTCATGACA----AT-------------AGATA-CTCAAT-TATAA--G-TGACTT-CCATATATGAGATGAG-TGACT
gi|9 : acATAATCTACTCTGGA-TACACTGA-------GGA-AGC--CGATCTGAATTGTT-C-ATTATATTTAAAGTTCAATATAACCGATGTCAAACC-A-TATATA-----AT-TAAAG----CTAC-TG-AGG------ATTT------------------------------------------------------ATAA--CAA--TATTA--G-CAACTT-CAATAGA-------AG-Tg
blockSeqs : T A A T TC T T . A A A TTTA CAAGT C TTTAA T G AGATAT CTTTTACTTTCAAAATATAACGGTAATTTCACTATAAGTAATTTTCATTAAAAGTGGGGATAA GT . A . T C T T A C GTATAA T CT A T AA A T TC C
blockSeqs : T . . T . A . . A A . TATA . . C . . . TATATATAGTTTCTTAAATATAACAGACAGTTCAATATGAATGACTTATATAAGTGACTT GT . A . . . . . . T C A . T T
blockSeqs : T . . . . C . . A A . CG . . T . . . CTTTTACTCACCTGGACAATAGATACTGCAATATAAGTTGACTTCCAATATGAGATG CT . A . . . . . . T T
blockSeqs : T . . . . C . . A A . TA . . A . . . CTTTTACTTCACTACAATAGATACTTCAATATAAGTGACTTCCAATATGAGTG CT . A . . . . . . T
blockSeqs : T . . . . A . . G A . GG . . T . . . TTTTTACAGGTAGTTCAATATAAGCATCTTCAATATAAGTGACTC GT . A . . . . . .
blockSeqs : T . . . . A . . A A . TG . . T . . . TTTTTATTTCAATAGAATT GT . A . . . . . .
blockSeqs : T . . . . C . . A A . GG . . G . . . TTTTTACTTCAATATAA AT . A . . . .
blockSeqs : . . . . . A . . . A . T . . A . . . CTTTTTCACCTCAATA G . . . .
blockSeqs : . . . . . C . . . . . A . . C . . . .
blockSeqs : . . . . A . . . . . T . . A . . . .
blockSeqs : . . . C . . .
blockSeqs : . . . . . .
blockSeqCons : TG*** N**** *** ***********
originalCons : TACAGTCTACTCCGGA-TATACTGAAA-TTCAGGG-GAC--CGACCTGANTTGTT-C-ATTATATCCAAAGTTCAATATAACTAATGTTGAACC-A-T---TA-----AA-TAATG----NTAC-TG-AGG------ATTTA------------CTT------T--T-----------AC-------------AGATAGTTCAA--TATAA--G-CGACTT-CAATATA-------AG-TGACTT-------------------CAGTATAA---CAGATAGTTCAAT-----------ATA-AGTGACTT-CA-ATATAAGTGGAG-TAGACTGT-ATT-T----TTTGANAA--ANTGAATATCTAAGNTTNATTNNCGNTCATTTC
finalCons : TACAGTCTACTCCGGA-TATACTGAAA-TTCAGGG-GAC--CGACCTGANTTGTT-C-ATTATATCCAAAGTTCAATATAACTAATGTTGAACC-ATG---TA-----AA-TAATGN----TAC-TG-AGG------ATTTA------------CTT------T--T-----------AC-------------AGATAGTTCAA--TATAA--G-CGACTT-CAATATA-------AG-TGACTT-------------------CAGTATAA---CAGATAGTTCAAT-----------ATA-AGTGACTT-CA-ATATAAGTGGAG-TAGACTGT-ATT-T----TTTGANAA--ANTGAATATCTAAGNTTNATTNNCGNTCATTTC
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|17 ): GTAAAACATTAATTCTCTGTGTATTATTATAGTAGTGG
Alignments
lowQualScore : 11111 11111 11111 99999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999 22222222222 333333 11 11
lowQualScore : 0 2 3 0 3 7 55 0 1 3 3 2 3 44 0 6666 22222 00000 6 33333 3 3 888888 77777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777 11 777 1 11111111111 4 5 5 5 5 3 000000 1 88 1 7 88 1 1 22 1
lowQualScore : . . . . . . .. . . . . . . .. . .... ..... ..... . ..... . . ...... .......................................................................................................................... .. ... . ........... . . . . . . ...... . .. . . .. . . .. .
lowQualScore : 7 3 6 4 6 3 00 5 0 6 6 4 4 66 4 5555 88888 88888 2 55555 1 1 888888 11111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111 33 888 9 11111111111 4 0 0 7 7 8 000000 0 33 0 3 55 0 0 00 0
consensus : TACAGTCTACTCCGGA-TATACTGAAA-TTCAGGG-GAC--CGACCTGANTTGTT-CAT-TATATCCAAAGTTCAATATAACC--GATGT----TGAACCA--TG-TA-----AA-TAATG----NTAC-TG-AGG------ATTTA------------CTT------T--T-----------AC-------------AGATAGTTCAA--TATAA--G-CGACTT-CAATATA-------AG-TGACTT-------------------CAGTATAA---CAGATAGTTCAAT-----------ATA-AGTGACTT-CA-ATATAAGTGGAG-TAGACTGT-ATT-T----TTTGANAA--ANTGAATATCTAAGNTTNATTNNCGNTCATTTC
Reference ( family-226 ) : TACAGTCTACTCCGGA-TATACTGAAA-TTCAGGG-GAC--CGACCTGANTTGTT-CAT-TATATCCAAAGTTCAATATAACT--AATGT----TGAACCA--TG-TA-----AA-TAATG----NTAC-TG-AGG------ATTTA------------CTT------T--T-----------AC-------------AGATAGTTCAA--TATAA--G-CGACTT-CAATATA-------AG-TGACTT-------------------CAGTATAA---CAGATAGTTCAAT-----------ATA-AGTGACTT-CA-ATATAAGTGGAG-TAGACTGT-ATT-T----TTTGANAA--ANTGAATATCTAAGNTTNATTNNCGNTCATTTC
gi|1 : TACAGTCAACCCCAGA-TATACTGAAA-TTAATGA-GAT--CAACCTCAAGTGTT-CAAATATATCCAAAGTTTAATTTAACC--AATGT----TGAACTA--TA-TA-----AA-----G---------TC-AGG------GTTTA------------ATT------T--TGCTTTGACATAAC-------------AGATAGTTCGA--CATGA--A-TGACCT-CAATATA-------AG--G------------------------AGNATAAAGTCAG--GGTTTAATTTTGCTTTGACATG-AATGACCT-CA-ATATAAGGGAAG-AAGACTGT-A--------TTTACCAA--AGTTAA-ATCT--GTTTGATTGACAGTCATTTC
gi|10 : cGTT-CAC-TATATCAAAAGTTTAATATAGCT--AATGT----TAATCCA--T--TA-----AACTAATA----CTAC-TC-AGG------ATTTA------------TTT------T------------------------------------------TAT----------TT-CAATA-------------GAATT-------------------------AA---CAGATA--TAGAT-----------ATG-AGTGACTC-CA-ATATCAGTGGAcagtc
gi|11 : aTACAGTCTAC-CCAGA-TATATTGAAA-TTCAA--------CAACCTGATTTCTT-CAT-TATATCCAAAGTCCAAAATGACC--AATAT----TGAGCCA--AA-TG-----AA-TAATG-----TAC-AA-GGG------ATTTA------------TTT------T--aaa
gi|12 : TCAA--TATAA--G-TGGTTA-CACTGT-------------ATTT-------------------CAGTACAA---CAGATAGTTAAAT-----------GTT-AGTGACTT-CGTATATTAGTGGGG-TAGGCTGT-ACTGTATAATTTGATAACTAATGAATc
gi|13 : ATGT----TGAACCA--CG-TA-----AA-TAATG----TTAC-TG-AGG------ATTTA------------TTT------T--T-----------AC-------------------TTCAA--TATAA-----------------------------------------------------CAG-ATAG---TCG-TAGTTCAAT-----------ATATAGCAACTT-CA-ATATAAGTGGAG-TACACTGT-ttg
gi|14 : AACTA--GG-TA-----AA-TTCTG----ATAC-TG-AGA------ATTTA------------CTT------T--T-----------ACTTCACTACAAT--AGATACTTCAA--TATAA--G-TGACTTCCAATATG-------AG-TG-----------------------CAGTA
gi|14 : aACTT-------------------CACTACAA---TAGATACTTCAAT-----------ATA-AGTGACTTCCA-ATATGAGTGCAG-TAGACTGT-ATT-C----Tgactgtattct
gi|15 : aaactaggtaaattctgatactgagaatttacttttTACAGTTTACTCCAGA-AATATTGAAA-TTCAGAT-GAC--CATCCTGAATTGTT-TAT-TATGTCATAGGTTCAATTAAAGT--GATGT----TGA
gi|16 : TACAGTCTAC-CTGGA-TATATTGAAA-TTCAAGG-GAC--CGAACTATCTTG
gi|2 : TACAGTGTACTCTGGA-TATACTGAAA-TTCAGGG-GAT--GGACCCGACTTGTT-CAT-TATATGTAAAGCTCAATATAACT--AATGT----TGACCTA--T--TA-----AA-AAATA----TTAC-TG-GAG------ATCTA------------TTT------T--T-----------AC-------------AGGTAGTTCAA--TATAA--G-CATCTT-CAATATA-------AG-TGACTC-------------------CACTATAA---CAGATAGTCCAAT-----------ATA-AGTGACTT-CA-ATAAAAGTGGGG-TAAACTGTAATT-T----TTTGAAAA--ATTGAATATCTAAGATTTATTTCCGCTCATTTCaattagatataag
gi|3 : -TATA-TCAAA-TCCAGAG-GGT--CAAG-TCAATTGTTTCAT-T-----CAAATATTGATATAACC--AATGT----TGGACCA--TA-TACAAGTAA-TAATA----TTAC-TGGAAA------ATTTA------------CTT------T--T-----------AC----------------T--TTCAAAATATAACGG-TAATTT-CACTATA-------AG-TAATTTTCATTAAAAGTGGGGATAACAGTATAA---GAGATAGTTCGCT-----------ATA-AGTGACTT-TA-GTATAAGTGGAGTTAGGCTGT-ATT-agcttcagt
gi|4 : catAGTTTACTCCAGA-TAATCTGAAA-TTCAGGT-CGC--CGGCATTAATTCTT-CAT-CATATCCAAAGTACAATATAACT--GATGT----TGAACCATTTA-TA-----AA-TAATG----GTAC-TG-GGGAGATATATTCA------------CTTCCAGTAT--C-----------AC-------------AGACAGTTCAG--TTTAA--G-CAACTT-CCAGGGA-------AG-TG
gi|5 : CAGTGTACTCTGGAATTTACTGAAA-TTCTGGGTGACTCCAACTTGACTTGTT-CAT-TATATCCAAAGTTC----TCACT--A----------AACTA--GG-TA-----AA-TTCTG----ATAC-TG-AGA------ATTTA------------CTT------T--T-----------ACTCACCTGGACAATAGATACTGCAA--TATAA--GTTGACTTCCAATATG-------AGATG-----------------------CAGTAgaatagaatactgtata
gi|6 : AAT-TAACTTTGATGTACTGTGAAATA--AGATA-----AA-TAATG----CAAC-TG-GGG------ATTTATATATATAGTTTCTTAAATA-T--A-----------AC-------------AGACAGTTCAA--TATGA--A-TGACTT---ATATA-------AG-TGACTT-------------------CAATAAAA---CAGACAGTTCAGT-----------GTA-AGTGACTgactgtattct
gi|7 : atttgctttaagctatgatgtgaaggctaagcaTACAGTCCACTCCAGA-TATATTGAAAATTCAGGG-GAC--TGACCTGAAGTGTT-CAA-TGTATCCAAAG----ATAGGA--------------AAACTA--TG-TA-----AA-TAATGTTTAATAC-TG-AGG------ATTTA------------CTT------T-----------------------------------TTC---------------ACCT-CAATA------------------------------------------TGA---CAGAAGGTTCAAT-----------ATA-AGTGACCT-CT-GTATAAGTGGAG-TGGACTGT-A
gi|8 : GTGTACTCTGGA--ATACTGAAA-TTCTGGGTGAC--CAA-TTGACTTGTT-CAT-TATATCCAAAGTTC----TCACT--A----------AACTA--GG-TA-----AA-TTCTG----ATACTTG-AGA------A-TTA------------CTT------TACTCATGACA----AT-------------AGATA-CTCAAT-TATAA--G-TGACTT-CCATATATGAGATGAG-TGACT
gi|9 : acATAATCTACTCTGGA-TACACTGA-------GGA-AGC--CGATCTGAATTGTT-CAT-TATATTTAAAGTTCAATATAACC--GATGT----CAAACCA--TA-TAT----AATTAAAG----CTAC-TG-AGG------ATTT------------------------------------------------------ATAA--CAA--TATTA--G-CAACTT-CAATAGA-------AG-Tg
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|17 ): GTAAAACATTAATTCTCTGTGTATTATTATAGTAGTGG