lowQualScore : 222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
lowQualScore : 55555555555555555555555555555555555555555555 11 4444444 1111 9999999999999999999999999999999999999999999999999 111111111111 1111111 1 7777777777777777 222222222 1111111 3333333333 11 11111111 666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666 11 1111 11111111 111 11 7777777777 11111111111111 11 88888888 444
lowQualScore : 11111111111111111111111111111111111111111111 5 44 66 44 4 2222222 5555 55 4 5555555555555555555555555555555555555555555555555 55 999 777777777777 3 77777 2222222 2 5 4 6 3 2222222222222222 88 5 000000000 6666666 4444444444 66 5 5 5 11 66666666 0 666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666 00 1 4 3 4444 33333333 777 4 4 66 3 1 5555555555 4 4 4 3 88888888888888 11 2 33333333 4 0 4 0 1 2 000 5
lowQualScore : ............................................ . .. .. .. . ....... .... .. . ................................................. .. ... ............ . ..... ....... . . . . . ................ .. . ......... ....... .......... .. . . . .. ........ . ............................................................................................................... .. . . . .... ........ ... . . .. . . .......... . . . . .............. .. . ........ . . . . . . ... .
lowQualScore : 00000000000000000000000000000000000000000000 0 66 22 66 0 0000000 3333 55 0 4444444444444444444444444444444444444444444444444 00 222 888888888888 2 77777 1111111 5 5 0 0 4 9999999999999999 33 0 000000000 2222222 6666666666 55 0 0 0 99 55555555 2 333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333 66 1 4 9 3333 11111111 666 1 0 99 3 6 4444444444 0 0 0 6 11111111111111 22 7 77777777 4 9 4 3 1 5 666 0
consensus : GTCTATGCGAAAGTTTTTTT---TG-GCCACACAG-GAC---ATTCGGT----CCT----GTGT-ACTCAATGA--ACA-CAC--GGGACCGAACCA-AATTTT----GTCGGAC-C-GAAAAACC--TA-ATGT---------A--------------AAA-------NA--CGN--------GAAA--ATGCAG---AACCAAGGAAATC--T-----TA-TTTATTATAC---T-AATAC----T--ATTGATATTTT-ATGTTTTCAA-A-----T--CC--GGN-AT-CGCTC---------CCGCAT-------AATNC--T-----TGAGACAGT-CCATG-CGG-TTTT--AATCAC-------ACTCATTTA-C---GTAC--T------TGTGAT--T-TTTGTGCGAT--------------ACAAA-TTTTNAAT-ACTCC-TGTCAAAAC-----AG--T--AAAAC---TCAAAACCGGACA--CTGAGACATC-GGACATTC-CG-GTCCG-------GTGT-AAAAAANGA-TGCATCGGAC-CTGAGGCACTGT--AT--T--AC-ATC-GG-T-CAGG-CG-GA--------TGCATCGGACCTGAGGCACTGT---T----ACA-TCGGTCA-GGTCCGATGGTCCG-ATGTC-TTTCGCATAGACT
Reference ( gi|1 ) : GTCTATGCGAAAGTTTATTT---TG-GCCCCACAG-GAC---ATTCTGT----TCT----GTGT-ACTCAATGA--ACA-AAC--AGGACCGAACCA-AATTTT----G--AGAC-G-AAAAAACC--TA-ATGT---------G--------------AAA-------CA--TGA--------GAAA--ATGCAG---AACCAAGGAAATC--T-----TA-TTTATTATAC---T-AATAC----T--ATTGATATCTT-AT-TCTTC---------T--CT--GGC-AT-CGCTC---------CCGCAT-------AATAC--T-----TGAGACGGT-CCATG-CGG-TTTT--AATCAC-------ACTCATTTA-C---GTAC--A------TGTAATGGTACTTGAGCGAT--------------ACACATTTTTTAACAACTCCATGTCAAAAC-----AG--T--AAAAC---TCAAAATTGGACA--CTGAGACATC-GGACATTC-CA-GTCCG-------GTGT-TAAAAAGGA-TGCATAAGAC-CTGAGGCACTGTACAT-ATGCAC-ATC-GG-T-CAGG-NG-GA--------TGCATAAGACTTGAGGCACTGTACATATGCACA-TCGGTCA-GGTCTGATGGTCTGTATGTC-TTTCGCATAGACT
gi|2 : GTATATGCGAAAGTTTTTTT---TA-GCCACACAG-GAC---ATTCGGT----CCTTAGTATGT-ACTCAATGA--ATA-CAC--GGGACTGAACCA-AATTTT----GTCGAAC-C-AAAAAACC--TA-ATGTAAAATAGGTG--------------AAA-------CA--CGT--------GAAG--ATGCAG---AACCAAGGAAATC--G-----TA-TTTATTATAC---T-AATAC----T--ATTGATATTTC-ATGTTTTCAACAGACTTT--CA--GAG-AT-TGCTC---------CTGCAG-------AATTG--TTA---TGAGACAGT-CCACG-CGG-TTTT--AATCAC-------ACTGATTTA-----------A------T-------TACTTAAA------------------ACAAACTC----ACAACTCT------AAAC---------------------CGAAA------A--CTGAGACATT-GAACATTC-TG-GTCAT-------GTGT-ACAAAAGGA-TGCATCGGAC-CTGAGACACTGTACAT-
gi|7 : GTCTATGCGAAAGTTT---T---TG-G-------GTG----------GT----CCT----GTGT-ACTCAATGA--ACGCAAC--CG-ACCGACCCA-ATTTTTTGTCG--GACC-G-AACAAGCC--TA-ATGT---------A--------------AAAGTGAAAACA--GGC--------GAAA--ATGCAG---AAACAAAGGAATT--C-----T---------------T-AGTAC-------------AGCTT-TT-TCTTC---------TACCA--GGG-ATTCGCCT---------CCGCAT-------AAT-C--T-----TGAGACAGT-CCATG-CGG-TTTTT-AATCTA-------ATTCTTTTAAC---ATAC-----------T--TGGTTTTTCTGTGCT--------------A-----TTTTTGGT--CTC--TGTCAAAAT-----AG--TTTAAAAC---TCAAA--CGGACA--CTGAGA---------ATTC-CATGTCCG-------GTGT--AAGTATTA-TGCATCGGAC-CCGAGGCACT-----T-AT-CACAATT-GG-T-CAGGTCC-GA--------TGCcagtctggtccgatgtcttttgcataga
gi|6 : aGTCTATGCGAAAGTTT--TTGGGTG-GTCCC------------------------T----GTGT-ACTCAATGA--ACG-CAC--CG-ACCGCACCACAATTTTTGTCG--GCCC-G-AAACAACC--TA-ATGTAAAAGT---G--------------AAA-------CA--GGC--------GAAA--ATGCAGA--AACAAAGGAAA--------------TTCTTGTAC-----------------------AGCTT--T-TTTTC---------TACCA--GGG-AT-CGCT----------CCGCAT-------AATTC--T-----TGAGACAGT-CCATG-CGGTTTTT--AATCTA-------ATTCTTTTA-C---ATAC--T------T----TGCT-TTTCTGTGCT--------------A-----TTTTTGGT--CTC--TGTCAAAAT-----AGTTT--AAAAC---TC-AAACCGGACA--CTGA-------AGA-ATTC-CATGTCCG-------GTG--TAAGTATTA-TGCATCGGAC-CCGAGGCGACGT---T-ATCAAC-ATT-GG-T-CAGGTCC-GA--------TGCtttcacacagaac
gi|3 : GTCTATGTGAAAGTTT---T---TGAGCCACACGG-GAC---ATTTGGTCCTATCT----ATATTACTCAATGA--ACA-CAC--AGGATTAAATCA-AATTTT----GTCGGAC-C-GACATACC--TC-ATGT---------A--------------AAA-----------------------AA-----GCAG---AACCAAGGAAATC------------TTATTATAC---C-AATAC----T--ATTGATATTTT-ATGTTTTCAAGACT---T--CCA-GAG-AT-TGTTC---------CCGCAT-------AAAAC--TTGTAATGAGACGGT-ACATG--------T--A--TGT-------GGTCATTTA-CA--ATGC--T------TG-GAT--TA-TTGTGCAGT--------------A-----TTTTTA------CC----TAAAAC-------------AAACCT-TCAAAACCGGACAC-CTGAGACATCAAGACATTCTTG-GTACT-------GTG--TACAAAAGA-TGCATCGGAC-T-----------------TGTAC-ATC-GG-T-CAGG-ttttcacacagacaa
gi|15 : aGTCTATGCGAAAGTTTTTTT---GG-GCCATACAG-GAC---ATTCAGT----CCT----GTGT-ACTCAATGA--ACA-CAC--tctgtcggtctgatgtcttttcgcatagact
gi|16 : aGTCTACGTAAAAGTTTTTTG---GG-GCCACACAG-GAC---ATTCGGT----CCA----GTGT-GCTCAATGA--ACA-
gi|2 : aAGGTTT--TT---TG-GTTCGACAA-AATTTGGTTCAGT----CCC----GTGT-ATTCATTGAGTACA-TACTAAGGACCGAAt
gi|4 : gtatatgcgaaagttttttttagccacacaggacaT----GTGT-ACTCGATGA--ACA-CAG--GGGACCAAACCA-AATTTT----GTCAAAT-C-GGAAAACC--TA-TTGT---------A--------------AAA-------AA---AA--------TAAATAATGCAG---AACCAAGGAAATC--T-----TA-TTTATTATTC---T-AATACTATAT--ATTGATATCTT-AT-TTTTC---------T--CT--GGC-AT-CATTC---------CTGCAT-------AAT----------------------ATG-CGG-TTTA--AATCAT-------AATCATTTA-C---GTAT--T------TG-AAT-----TTGTGCAATATTTTTTACCTAAAACAAACTTTTAAATTACTCTGTGTCAAAAT-----AG--T--AAAACTTGTCAGAACCAAACA--CTGAGACATC-GGACATTT-CA-GTCCA-------TTGT-AAAAAATGA-CACATCGGAC-TTAAGGCACTGTACAT-aatgtaaaataggtgaaacacgtgaagatgcagaaccaaggaaatcgtatttattatactaatactattgatatttcatgttttcaacagactttcagagattgctcctgcagaattgttatgagacagtccacgcggttttaatcacactgatttaattacttaaaacaaactcacaactctaaaccgaaaactgagacattgaacattctggtcatgtgtacaaaaggatgcatcggacctgagacactgtacatcagtctggtccgatgtcttttgcataga
gi|14 : TCAATTA--ACA-CAC--AGGACCAAACCA-AATTCT----GTCCGACCG-AAAA--CT--TT-ATGT---------A--------------AAA-------AA--TT---------GAAA--ATGCAG---AACCAAGGAAATA--T-----Tcattcaggtacagtggcctgatgtctttcgcatagact
gi|12 : ATGA--ACA-CAC--AGGACCAAACCA-AATTGT----C--AGAC-TTAAAAAACT--TA-ATGT---------A--------------AAA-------AAG-TGAAAACACTTGAAA--ATGCAG---AACCAAGGAAATC--T-----TA-AATATTA-AC---T-AATACT---T--ATT-ATA--TT-AT-T
gi|11 : ATGA--ACA-CAC--AGGACAAAACCA-AATTGT----C--AGAC-T-TAAAAACT--TAGATGT---------A--------------AAA-------GAAGTGAACACTGT-GAAA--ATGCAG---AACCAAGGAAATC--TTAAAATA-TTAACTATACCTTT-AATTA----T--ATTGATgaattcaaaattttttttttaaaaaacctatcaaaccaataa
gi|13 : gt--ACA-CAC--AGGACCAAACCA-AATTGT----C--AGAC-T-TAAAAACT--TA-ATGT---------A--------------AAA-------AAG-TGAAACACTT-GAAA--ATGCAG---AACCAAGGAAATC--T-----TA-AATATTA-AC---T-AATAC----TTAATT-ATATgaaagtcaaatttttttttaaaaaacctatcaaacccaataagcgaggaaattgattcagagatgaatcaaacatt
gi|9 : CA-CAT--GGGACCGAACCA-AATTTT----GTCAGAC-A-GAAAAGCCTATA-ACGT---------GTATATAAAACAGTAAAA-------CA--CGT--------GAAA--ATACAG---AACCAAGGAAATT--T-----TA-TTCATTATAC---TAAATAC----T--GTTGATATTTT-AT-TCTTC---------T--CT--GGC-Atgatgaattcaaaatttttttttaaaaacctatcaaaccaataa
gi|5 : atgcatgT---------A--------------AAA-------AA--TTT--------GAAA--ATGCAACTCAACCAAGGAA-----------TA--------------T-AATAC----T--ATTGATAT-TT-A----TTC---------T--CT--GGC-AT-CGCTC---------CCGCAT-------AATAC--T-----TGAGAACAT-CCATT-TGG-TTTC--AGTCACGCTCTCAACTCGTTTA-TTTAGTACCTAGATTTCTGTGATATTTTTTGCTTTAA--------------ACAAAAATTTAAATGAGTCCATGTCAAACT-----A---T--AAA-----CCA------GACA--CTGAGGCATC-GGACATTC-TA-GTCTG-------GTGT-AAAAAATGT-TGCATCAAAC-CTGAGGCACTGT---------GC-ATC-AG-T-CAGGTCT-GT--------TGCATAaacatgacaaaacagtaaaacttaaaacaggacactgagacatcaaacattttggtctggtgtaaaaaaggatgcatcagacctgaggcactgtatattggtcaggttcgatggtccaatgtctttcacatagactg
gi|10 : atgttaaccttcaataacactacgaaagagacataaatttcgtccgcagcccgagaaataaggacattttattgtTGCAG---AACCAAGGAAATC--G-----TA-TTTATTATAC---T-AATAC----T--GTTGATATTTC-ATGTTTTCAACAGACT-T--CC--AGAGAT-TGCTC---------CTGAAA-------AATTG--T-----TGAGATAGT-CCATG-CAG-TTTT--AATCAC-------ACTAATTTA-gaatgtg
gi|8 : ACCAAGGAAATCGTT-----TATTTTATTATAC---A-CATAC----T--G-TGATATTTTCATGTTTTCAACAGGACTT--CCAGAGC-AT-TGCTCTGAAAAAAACACCATAAACGAAAATATTGT-----TGAGATAGTCCCATGCCAG-TCTTTAAATCAC-------ACTAACTT---------------------TAAC------------AT--------------TCAC-TCTTTAAACA---------CAAAACTGGATAA--C--AACAC---TCCAA----GACATTCTG----GTC-GGA-------G-GTCCT-------GTGTACAAAAGGGACTGCATCGGTC-CTGAGAAACTGC--------TAC-ATC-GG-T-CAAG-attacttaaaacaaactggaaacagacatcagacattctggtcggaggtcctgtgtacaaaaggatgcatcggtcctgagaaactgtacatcggtcaggtctgatggtccaatgtctttcgcgtaaact
gi|9 : gacCATGACAAAAC-----AG--T--AAAAC---TTAAAACAGGACA--CTGAGACATC-AAACATTT-TG-GTCTG-------GTGT-AAAAAAGGA-TGCATCAGAC-CTGAGGCACTGT---------AT-ATT-GG-T-CAGG-gtctgatggtccaatgtctctttc
gi|10 : atgcatgcacatgggaccgaaccaaattttgtcagacagaaaagcctataacgtgtatataaaacagtaaaacacgtgaaaatacagaaccaaggaaattttattcattatactaaatactgttgatattttattcttctctggcaaa--T--AAAAC------AAACTGGAAA--C--AGACATC-AGACATTC-TG-GTCGGAGGTCCTGTGT-ACAAAAGGA-TGCATCGGTC-CTGAGAAACTGT---------AC-ATC-GG-T-CAGG-ttcgatggtccaatgtctttcacatagactg
gi|6 : tgcagaaccaaggaaatcgtatttattatactaatactgttgatatttcatgttttcaacagacttccagagattgctcctgaaaaattgttgagatagtccatgcagttttaatcacactaatttaattact-------GTGT-GAAAA------GCATCGGAC-CTGAC-CAATGTTGAT-A---AC-GTC-GCCT-CGGG-TCCGA--------TGCATAATACTT---ACACCGGACATtctgatggtccaatgtctttcgcgtaaact
gi|5 : gtctatgcgaaagtttttgggtggtccctgtgtactcaatgaacgcaccgaccgcaccacaatttttgtcggcccgaaacaacctaatgtaaaagtgaaacaggcgaaaatgcagaaacaaaggaaattcttgtacagctttttttctaccagggatcgctccgcataattcttgagacagtccatgcggtttttaatctaattcttttacatactttgcttttctgtgctatttttggtctctgtcaaaatagtttaaaactcaaaccggacactgaagaattccAGACACTGAGGCATCGGACAT---------TCTAG-T-CTGG-TG-TAAAAAATGTTGCATCAAACCTGAGGCACTGT--------GCA-TCAGTCA-GGTCTGTTGagacaa
gi|2 : atgttaaccttcaataacactacgaaagagacataaatttcgtccgcagcccgagaaataaggacattttattgttaaaaaatttgaaaatgcaactcaaccaaggaatataatactattgatatttattctctggcatcgctcccgcataatacttgagaacatccatttggtttcagtcacgctctcaactcgtttatttagtacctagatttctgtgatattttttgctttaaacaaaaatttaaatgagtccatgtcaaactataaacc-CTGAGACATTGAACATTCTGGTC-ATG-TG-TACAAA-AG-GA--------TGCATCGGACCTGAGACACTGT--------ACA-TCAGTC---------TGGTCCG-ATGTC-TTTTGCATAGAcatagaatgtg
gi|10 : gtatatgcgaaagttttttttagccacacaggacattcggtccttagtatgtactcaatgaatacacgggactgaaccaaattttgtcgaaccaaaaaacctaatgtaaaataggtgaaacacgtgaagatgcagaaccaaggaaatcgtatttattatactaatactattgatatttcatgttttcaacagactttcagagattgctcctgcagaattgttatgagacagtccacgcggttttaatcacactgatttaattacttaaaacaaactcacaactctaaaccgaaaa-CAAA-AG-GA--------TGCATCGGTCCTGAGAAACTGTACAT---------CGGTCA-GGTCTGATGGTCCA-ATGTC-TTTCGCGTAAACT
gi|9 : tgcagaaccaaggaaatcgtatttattatactaatactgttgatatttcatgttttcaacagacttccagagattgctcctgaaaaattgttgagatagtccatgcagttttaatcacactaatttaattacttaaaacaaactggaaacagacatcagacattctggtcggaggtcctgtgtaG-GA--------TGCATCAGACCTGAGGCACTGT--------ATA-TTGGTCA-GGTTCGATGGTCCA-ATGTC-TTTCACATAGACT
gi|8 : atgcatgcacatgggaccgaaccaaattttgtcagacagaaaagcctataacgtgtatataaaacagtaaaacacgtgaaaatacagaaccaaggaaattttattcattatactaaatactgttgatattttattcttctctggcaaacatgacaaaacagtaaaacttaaaacaggacactgagacatcaaacattttggtctggtgtaaaaaaG-GAC-------TGCATCGGTCCTGAGAAACTGC-------TACA-TCGGTCAAGGTCTGATGGTCCA-ATGTC-TCTg
gi|4 : gacaccaaggaaatcgtttattttattatacacatactgtgatattttcatgttttcaacaggacttccagagcattgctctgaaaaaaacaccataaacgaaaatattgttgagatagtcccatgccagtctttaaatcacactaactttaacattcactctttaaacacaaaactggataacaacactccaagacattctggtcggaggtcctgtgtacaaaag-GA--------CACATCGGACTTAAGGCACTGTACAT-----CA-T---TCA-GGTACAGTGGCCTG-ATGTC-TTTCGCATAGACTttc
gi|7 : tgtgtactcgatgaacacaggggaccaaaccaaattttgtcaaatcggaaaacctattgtaaaaaaaataaataatgcagaaccaaggaaatcttatttattattctaatactatatattgatatcttatttttctctggcatcattcctgcataatatgcggtttaaatcataatcatttacgtatttgaatttgtgcaatattttttacctaaaacaaacttttaaattactctgtgtcaaaatagtaaaacttgtcagaaccaaacactgagacatcggacatttcagtccattgtaaaaaatA--------TGCATCGGACCCGAGGCACT-----TAT-CACAATTGGTCA-GGTCCGATG----------C-TTTCACACAGA
gi|6 : agtctatgcgaaagtttttgggtggtcctgtgtactcaatgaacgcaaccgaccgacccaattttttgtcggaccgaacaagcctaatgtaaaagtgaaaacaggcgaaaatgcagaaacaaaggaattcttagtacagctttttcttctaccagggattcgcctccgcataatcttgagacagtccatgcggtttttaatctaattcttttaacatacttggtttttctgtgctatttttggtctctgtcaaaatagtttaaaactcaaacggacactgagaattccatgtccggtgtaagtattA--------TGCATCGGACCCGAGGCGACGT---TATCAACA-TTGGTCA-GGTCCGATG--CT--------TTTCACACAGACac
gi|3 : gtctatgcgaaagtttttgggtggtccctgtgtactcaatgaacgcaccgaccgcaccacaatttttgtcggcccgaaacaacctaatgtaaaagtgaaacaggcgaaaatgcagaaacaaaggaaattcttgtacagctttttttctaccagggatcgctccgcataattcttgagacagtccatgcggtttttaatctaattcttttacatactttgcttttctgtgctatttttggtctctgtcaaaatagtttaaaactcaaaccggacactgaagaattccatgtccggtgtaagtattTGTACA-TCGGTCA-GGTCTGTCGGTCTG-ATGTCTTTTCGCATAGACTaa
Alignments
lowQualScore : 111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 33333 1111 11111 111111111 11111111 11111111 777777777777777777777 11111111111111 111111111 1111 55555555555555 111111111 2222222222222222222 1111111 11111 444444444444444444444444444444444444444444444444444444444444444444444444444 111111 11111111 111111 1111 4444444444 3333 444444444444
lowQualScore : 00000 1 5 5 0000 22222 3 2 3 999 7777 3 3 3 333333333 55555555 22222222 3 666666666666666666666 3 555 2 33333333333333 0 66666 3 99999999 1 222222222 6666 0 33333333333333 1 4 777777777 3 4444444444444444444 4 4 4 8 66 4444444 4 4 88888 222222222222222222222222222222222222222222222222222222222222222222222222222 555555 99999999 5 4 111111 4 2 3333 99 6 4 4 0000000000 4 0000 3 3 0 444444444444 5 666 5
lowQualScore : ..... . . . .... ..... . . . ... .... . . . ......... ........ ........ . ..................... . ... . .............. . ..... . ........ . ......... .... . .............. . . ......... . ................... . . . . .. ....... . . ..... ........................................................................... ...... ........ . . ...... . . .... .. . . . .......... . .... . . . ............ . ... .
lowQualScore : 00000 3 0 0 6666 55555 1 2 3 444 2222 3 3 3 333333333 44444444 11111111 3 222222222222222222222 3 444 9 88888888888888 4 44444 1 33333333 5 333333333 8888 3 88888888888888 0 4 888888888 7 3333333333333333333 4 4 4 9 11 4444444 4 4 88888 555555555555555555555555555555555555555555555555555555555555555555555555555 555555 77777777 7 0 555555 0 5 9999 88 3 0 0 4444444444 0 4444 1 6 7 999999999999 7 666 7
consensus : GTCTATGCGAAAGTTTTTTT-G-GCCACACAGGACATTCGGTCC-T----GTGTA-----CTCAATGAACAC-ACGGGACCGAACCA-AATTTT-GTC---GGACC-GAA-A-AAC---------CTA--------AT--------GT-AAAAA-----A---------C--GTGAA-AATGCAG---AACCAA-GGAAATC--T-----TATTT-ATTATAC---T-AATAC-T--AT----TGAT---------ATTTT-ATGTTTTCAA-A-----TCCA-GGNAT-CGCTC---------CCGCATA---------ATNCT-----TGAGA-CAGT-CCATG-CGG-TTTT--AATCAC-------ACTCA-TTT-AC---GTACTT--------GTGAT--T-TT-TGTGC----GATA--------------CAAATTTTT-AA--T-A-CTCC-TGTCAAAACAG--TAAAAC--T---CAAAACCGGACA-CTGAGACA------TC-GGACATTC-CG-GTCCGGTGTA-AAAAANGA-TGCATCGGACCTGAGGC-ACTGTAT-----T-AC-ATCGGTCAGGT-CNGA-TGCATCGGACCTGAGGCACTGT-------T----ACATCGGTC-AGGTCCGATGGTCCG-ATGTC-TTTCGCATAGACT
Reference ( family-2193 ) : GTCTATGCGAAAGTTTTTTTTG-GCCACACAGGACATTCGGTCC-T----GTGTA-----CTCAATGAACAC-ACGGGACCGAACCA-AATTTT-GTC---GGACC-GAA-A-AAC---------CTA--------AT--------GT-AAAAN-----A---------C--GNGAA-AATGCAG---AACCAA-GGAAATC--T-----TATTT-ATTATAC---T-AATAC-T--AT----TGAT---------ATTTT-ATGTTTTCAA-A-----TCC--GGNAT-CGCTC---------CCGCATA---------ATNCT-----TGAGA-CAGT-CCATG-CGG-TTTT--AATCAC-------ACTCA-TTT-AC---GTACTT--------GTGAT--T-TT-TGTGC----GATA--------------CAAATTTTN-AA--T-A-CTCC-TGTCAAAACAG--TAAAAC--T---CAAAACCGGACA-CTGAGACA------TC-GGACATTC-CG-GTCCGGTGTA-AAAAANGA-TGCATCGGACCTGAGGC-ACTGTAT-----T-AC-ATCGGTCAGG--CGGA-TGCATCGGACCTGAGGCACTGT-------T----ACATCGGTC-AGGTCCGATGGTCCG-ATGTC-TTTCGCATAGACT
gi|1 : GTCTATGCGAAAGTTTATTTTG-GCCCCACAGGACATTCTGTTC-T----GTGTA-----CTCAATGAACAA-ACAGGACCGAACCA-AATTTT-G-----AGACG-AAA-A-AAC---------CTA--------AT--------GT-GAAAC-----A---------T--GAGAA-AATGCAG---AACCAA-GGAAATC--T-----TATTT-ATTATAC---T-AATAC-T--AT----TGAT---------ATCTT-AT-TCTTC---------TCT--GGCAT-CGCTC---------CCGCATA---------ATACT-----TGAGA-CGGT-CCATG-CGG-TTTT--AATCAC-------ACTCA-TTT-AC---GTACAT--------GTAATGGTACT-TGAGC----GATA--------------CACATTTTTTAA--C-AACTCCATGTCAAAACAG--TAAAAC--T---CAAAATTGGACA-CTGAGACA------TC-GGACATTC-CA-GTCCGGTGTT-AAAAAGGA-TGCATAAGACCTGAGGC-ACTGTACATATGC-AC-ATCGGTCAGG--NGGA-TGCATAAGACTTGAGGCACTGTACATATGC----ACATCGGTC-AGGTCTGATGGTCTGTATGTC-TTTCGCATAGACT
gi|10 : TGCAG---AACCAA-GGAAATC--G-----TATTT-ATTATAC---T-AATAC-T--GT----TGAT---------ATTTC-ATGTTTTCAACAGACT-TCCA-GAGAT-TGCTC---------CTGAAAA---------ATTGT-----TGAGA-TAGT-CCATG-CAG-TTTT--AATCAC-------ACTAA-TTT-AA---TTACTT--------
gi|10 : --TAAAAC--------AAACTGGAAA-C--AGACA------TC-AGACAT-------TCTGGT------------------CGGA-----GGT-CCTGTGT-------AC-A------AAA---GGA-TGCATCGGTCCTGAGAAACTGT------------ACATCGGTC-AGGTCTGATGGTCCA-ATGTC-TTTCGCGTAAACTaaaacaaactggaaacagacatcagacattctggtcggaggtcctgtgtacaaaaggatgcatcggtcctgagaaactgtacatcggtcaggtctgatggtccaatgtctttcgcgtaaact
gi|11 : tgcagaaccaaggaaatcgtatttattatactaatactgttgatatttcatgttttcaacagacttccagagattgctcctgaaaaattgttgagatagtccatgcagttttaatcacactaatttaattactATGAACAC-ACAGGACAAAACCA-AATT---GTC---AGACT-TAA-A-AAC---------TTAG-------AT--------GT-AAAAG-----AAGTGAACACT--GTGAA-AATGCAG---AACCAA-GGAAATC--TTAAAATATTA-ACTATACCTTT-AATTA-T--AT----TGATGAAAGTCAAATTTT----TTTTTAA-A-----
gi|12 : gtATGAACAC-ACAGGACCAAACCA-AATT---GTC---AGACTTAAA-A-AAC---------TTA--------AT--------GT-AAAAA-----AGTGAAAACAC--TTGAA-AATGCAG---AACCAA-GGAAATC--T-----TAAAT-ATTA-AC---T-AATACTT--AT----T-AT---------ATTAT--TGAATTCAA-A-----aaacctatcaaacccaataagcgaggaaattgattcagagatgaatcaaacatt
gi|13 : ACAC-ACAGGACCAAACCA-AATT---GTC---AGACT-TAA-A-AAC---------TTA--------AT--------GT-AAAAA-----AGTGAAACA-C--TTGAA-AATGCAG---AACCAA-GGAAATC--T-----TAAAT-ATTA-AC---T-AATAC-TTAAT----T-AT---------A-TTG-ATGAATTCAA-A-----attttttttttaaaaaacctatcaaaccaataa
gi|14 : TCAATTAACAC-ACAGGACCAAACCA-AATTCT-GTC---CGACC-G-A-A-AAC---------TTT--------AT--------GT-AAAAA-----A---------T---TGAA-AATGCAG---AACCAA-GGAAATA--T-----Tatttttttttaaaaacctatcaaaccaataa
gi|15 : GTCTATGCGAAAGTTTTTTTGG-GCCATACAGGACATTCAGTCC-T----GTGTA-----CTCAATGAACAC-AC
gi|16 : aGTCTACGTAAAAGTTTTTTGGG-GCCACACAGGACATTCGGTCC-A----GTGTG-----CTCAATGAACA
gi|2 : aGTATATGCGAAAGTTTTTTTTA-GCCACACAGGACATTCGGTCC-TTAGTATGTA-----CTCAATGAATAC-ACGGGACTGAACCA-AATTTT-GTC---GAACC-AAA-A-AAC---------CTA--------AT--------GT-AAAAT-----AGGTGAAACAC--GTGAA-GATGCAG---AACCAA-GGAAATC--G-----TATTT-ATTATAC---T-AATAC-T--AT----TGAT---------ATTTC-ATGTTTTCAACAGACTTTCA--GAGAT-TGCTC---------CTGCAGA---------ATTGTTA---TGAGA-CAGT-CCACG-CGG-TTTT--AATCAC-------ACTGA-TTT-AA---TTACTT-----------------------------AAAA--------------CAAACTCAC-A-----A-CTCT----------------AAAC--C---GAAAAC--------TGAGACA------TT-GAACATTC-TG-GTCATGTGTA-CAAAAGGA-TGCATCGGACCTGAGAC-ACTG--------T-AC-ATCAGTCTGGT-CCGA-TGt
gi|3 : GTCTATGTGAAAGTTTTT---GAGCCACACGGGACATTTGGTCC-T----ATCTATATTACTCAATGAACAC-ACAGGATTAAATCA-AATTTT-GTC---GGACC-GAC-A-TAC---------CTC--------AT--------GT-AAAAA-----A---------------------GCAG---AACCAA-GGAAATC-----------TT-ATTATAC---C-AATAC-T--AT----TGAT---------ATTTT-ATGTTTTCAA-GACT--TCCA-GAGAT-TGTTC---------CCGCATA---------AAACTTGTAATGAGA-CGGT-ACATG--------T--A--TGT-------GGTCA-TTT-ACA--ATGCTT--------G-GAT--T-AT-TGTGC----AGT------------------ATTTTT-A---------CC-T---AAAAC------AAACCTT---CAAAACCGGACACCTGAGACA------TCAAGACATTCTTG-GTACTGTGTA-CAAAA-GA-TGCATCGGACTTG-----------------T-AC-ATCGGTCAGG--tcttttgcataga
gi|3 : aGA-TGCATCGGACTTG----------------T----ACATCGGTC-AGGTCTGTCGGTCTG-ATGTCTTTTCGCATAGACTtctgtcggtctgatgtcttttcgcatagact
gi|4 : agtctatgtgaaagtttttgagccacacgggacatttggtcctatctatattactcaatgaacacacaggattaaatcaaattttgtcggaccgacatacctcatgtaaaaaagcagaaccaaggaaatcttattataccaatactattgatattttatgttttcaagacttccagagattgttcccgcataaaacttgtaatgagacggtacatgtatgtggtcatttacaatgcttggattattgtgcagtatttttacctaaaacaaaccttcaaaaccggacacctgagacatcaagacattcttggtactgtgtacaaaa-T----GTGTA-----CTCGATGAACAC-AGGGGACCAAACCA-AATTTT-GTC---AAATC-GGA-A-AAC---------CTA--------TT--------GT-AAAAA-----A---------A--ATAAATAATGCAG---AACCAA-GGAAATC--T-----TATTT-ATTATTC---T-AATAC-T--ATATATTGAT---------ATCTT-AT-TTTTC---------TCT--GGCAT-CATTC---------CTGCATA---------AT---------------------ATG-CGG-TTTA--AATCAT-------AATCA-TTT-AC---GTATTT--------G-AAT--T-T---GTGC----AATATTTTTTACCTAAAACAAACTTTT-AAATT-A-CTCTGTGTCAAAATAG--TAAAAC--TTGTCAGAACCAAACA-CTGAGACA------TC-GGACATTT-CA-GTCCATTGTA-AAAAATGA-CACATCGGACTTAAGGC-ACTG--------T-AC-ATCATTCAGG-------TACAGTGG-CCTGA
gi|4 : GA-CACATCGGACTTAAGGCACTGT------------ACATCATTC-AGGTACAGTGGCCTG-ATGTC-TTTCGCATAGACTtgtctttcgcatagact
gi|5 : tgtgtactcgatgaacacaggggaccaaaccaaattttgtcaaatcggaaaacctattgtaaaaaaaataaataatgcagaaccaaggaaatcttatttattattctaatactatatattgatatcttatttttctctggcatcattcctgcataatatgcggtttaaatcataatcatttacgtatttgaatttgtgcaatattttttacctaaaacaaacttttaaattactctgtgtcaaaatagtaaaacttgtcagaaccaaacactgagacatcggacatttcagtccattgtaaaaaatTCAAT-AACACTACGAAAGAGACATA-AATTTC-GTCCGCAGCCC-GAG-A-AATAAGGACATTTTA--------TT--------GTTAAAAA-----A---------T--TTGAA-AATGCAACTCAACCAA-GGAA---------------------TA----T-AATAC-T--AT----TGAT---------ATTT--AT----TC---------TCT--GGCAT-CGCTC---------CCGCATA---------ATACT-----TGAGAACA-T-CCATT-TGG-TTTC--AGTCACGCTCTCAACTCG-TTT-ATTTAGTACCTAGATTTCTGTGATA-T-TT-TTTGCTTTAAACA--------------AAAATTT-A-AA--TGA-GTCCATGTCAAA-----------C--T---ATAAACCAGACA-CTGAGGCA------TC-GGACATTC-TA-GTCTGGTGTA-AAAAATGT-TGCATCAAACCTGAGGC-ACTG--------T-GC-ATCAGTCAGGT-CTGT-TGCAT
gi|6 : atgttaacctGTCTATGCGAAAGTTTTT-------------GGGT----GGTCCCT----GTGTA-----CTCAATGAACGC-ACCG-ACCGCACCACAATTTTTGTC---GGCCC-GAA-ACAAC---------CTA--------AT--------GT-AAAAGTGAA-A---------CAGGCGAA-AATGCAG---AAACAAAGGAAAT-------------T-CTTGTAC------A-GC-T----------------------TTTT----TTCT----A-----CCA--GGGAT-CGCTC---------C-GCATA---------ATTCT-----TGAGA-CAGT-CCATG-CGGTTTTT--AATCTA-------ATTCT-TTT-AC---ATACTT---------TGCT--T-TTCTGTGC------T------------------ATTTTT-GG--T---CT-C-TGTCAAAATAGTTTAAAAC--T---C-AAACCGGACA-CTGA-------------AGA-ATTC-CATGTCCGGTGT--AAGTATTA-TGCATCGGACCCGAGGCGACGTTAT-----CAAC-ATTGGTCAGGT-CCGA-TGCagaatgtg
gi|6 : A-TGCATCGGACCCGAGGCGACGT-------TATCAACATTGGTC-AGGTCCGATGCT----------TTTCACACAGACttttcacacagacaa
gi|7 : gtctatgcgaaagtttttgggtggtccctgtgtactcaatgaacgcaccgaccgcaccacaatttttgtcggcccgaaacaacctaatgtaaaagtgaaacaggcgaaaatgcagaaacaaaggaaattcttgtacagctttttttctaccagggatcgctccgcataattcttgagacagtccatgcggtttttaatctaattcttttacatactttgcttttctgtgctatttttggtctctgtcaaaatagtttaaaactcaaaccggacactgaagaattccatgtccggtgtaagtattGTCTATGCGAAAGTTTTT-------------GGGT----GGTCC-T----GTGTA-----CTCAATGAACGC-AACCGACCGACCCA-ATTTTTTGTC---GGACC-GAACA-AGC---------CTA--------AT--------GT-AAAAGTGAAAA---------CAGGCGAA-AATGCAG---AAACAA-AGGAATT--C-----T---------------T-AGTAC------------AG---------CTTTT----TCTTCTA--------CCA-GGGATTCGCCT---------CCGCATA---------AT-CT-----TGAGA-CAGT-CCATG-CGGTTTTT--AATCTA-------ATTCT-TTTAAC---ATACT----------TGGT--T-TT-TCTGT----GCT------------------ATTTTT-GG--T---CT-C-TGTCAAAATAGTTTAAAAC--T---CAAA--CGGACA-CTGAGA---------------ATTC-CATGTCCGGTGT--AAGTATTA-TGCATCGGACCCGAGGC-ACT-TAT-----C-ACAATTGGTCAGGT-CCGA-TGCaa
gi|8 : aACCAA-GGAAATCGTT-----TATTTTATTATAC---A-CATAC-T--G-----TGAT---------ATTTTCATGTTTTCAACAGGACTTCCAGAGCAT-TGCTCTGAAAAAAACACCATAAACGAAAATATTGT-----TGAGA-TAGTCCCATGCCAG-TCTTTAAATCAC-------ACTAACTTT-A------AC-------------AT--T-------------------------------CACTCTTTA-AA--C-A---------CAAAACTG--GATAAC---------AAC---ACT-CCAAGACATTCTGGTC-GGA-------G-GTCCTGTGTACAAAAGGGACTGCATCGGTCCTGAGAA-ACTG--C-----T-AC-ATCGGTCAAGGTCTGA-TGtttcacacagaac
gi|8 : gacGGACTGCATCGGTCCTGAGAAACTGC-------T----ACATCGGTCAAGGTCTGATGGTCCA-ATGTC-TCTgtccaatgtctctttc
gi|9 : gacaccaaggaaatcgtttattttattatacacatactgtgatattttcatgttttcaacaggacttccagagcattgctctgaaaaaaacaccataaacgaaaatattgttgagatagtcccatgccagtctttaaatcacactaactttaacattcactctttaaacacaaaactggataacaacactccaagacattctggtcggaggtcctgtgtacaaaagCAC-ATGGGACCGAACCA-AATTTT-GTC---AGACA-GAA-A-AGC---------CTATAACGTGTATATAAAACAGT-AAAAC-----A---------C--GTGAA-AATACAG---AACCAA-GGAAATT--T-----TATTC-ATTATAC---TAAATAC-T--GT----TGAT---------ATTTT-AT-TCTTC---------TCT--GGCAttc
gi|9 : atgcatg-TGACAAAACAG--TAAAAC--T---TAAAACAGGACA-CTGAGACA------TC-AAACATTT-TG-GTCTGGTGTA-AAAAAGGA-TGCATCAGACCTGAGGC-ACTGTAT----------ATTGGTCAGG--aacatgacaaaacagtaaaacttaaaacaggacactgagacatcaaacattttggtctggtgtaaaaaaggatgcatcagacctgaggcactgtatattggtcaggttcgatggtccaatgtctttcacatagactg
gi|9 : atgcatgcacatgggaccgaaccaaattttgtcagacagaaaagcctataacgtgtatataaaacagtaaaacacgtgaaaatacagaaccaaggaaattttattcattatactaaatactgttgatattttattcttctctggcaaacaGGA-TGCATCAGACCTGAGGCACTGT------------ATATTGGTC-AGGTTCGATGGTCCA-ATGTC-TTTCACATAGACTttcgatggtccaatgtctttcacatagactg
Alignments
lowQualScore : 111111111111111111111111111111111111111111111111111111111111
lowQualScore : 3333333 1111 11111 111111111 11111111 11111111 7777777777777777777777777 11111111111111 1111111 111111111 1111 444444444 111111111 2222222222222222222 11 1111111 222222 555555555555555555555555555555555555555555555555555555555555 2222222222222222222222 111111 111111 11111111 4444444444 33333333
lowQualScore : 5 6666666 1 5 5 0000 22222 3 2 3 999 7777 3 3 3 333333333 55555555 22222222 3 0000000000000000000000000 3 555 2 33333333333333 0 66666 0000000 1 222222222 7777 999999999 4 4 1 4 777777777 3 4444444444444444444 4 4 4 4 00 4444444 4 333333 1 666666666666666666666666666666666666666666666666666666666666 8888888888888888888888 999999 5 4 111111 4 2 9999 22222222 3 5 3 3 0000000000 3 3 1 3 99999999 8 6 6
lowQualScore : . ....... . . . .... ..... . . . ... .... . . . ......... ........ ........ . ......................... . ... . .............. . ..... ....... . ......... .... ......... . . . . ......... . ................... . . . . .. ....... . ...... . ............................................................ ...................... ...... . . ...... . . .... ........ . . . . .......... . . . . ........ . . .
lowQualScore : 7 1111111 3 0 0 6666 55555 1 2 3 444 2222 3 3 3 333333333 44444444 11111111 3 9999999999999999999999999 3 444 9 88888888888888 4 44444 5555555 5 333333333 9999 333333333 6 4 0 4 888888888 7 3333333333333333333 4 4 4 4 66 4444444 4 222222 0 111111111111111111111111111111111111111111111111111111111111 8888888888888888888888 777777 7 0 555555 0 5 8888 44444444 6 8 6 6 2222222222 6 6 0 5 66666666 0 7 7
consensus : GTCTATGCGAAAGTTT-TTTT-G-G-CCACACAGGACATTCGGTCC-T----GTGTA-----CTCAATGAACAC-ACGGGACCGAACCA-AATTTT-GTC---GGACC-GAA-A-AAC---------CTA--------AT--------GT-AAAA--------A-A---------C---GTGAA-AATGCAG---AACCAA-GGAAATC--T-----TATTT-ATTATAC---T-AATAC----T--ATTGAT---------ATTTT-ATGTTTTCAA-A-----TCCAG-GGAT-CGCTC---------CCGCATA---------ATNCT-----TGAGA-CAGT-CCATG-CGG-TTTT--AATCAC-------ACTCA-TTTA-C---GTACTTG-GAT--T-TT-TGTGCGAT--------------ACA-ATTTTT-AA--TA-CTCC-TGTCAAAA-------------CA-G--T--AAAAC---TCAAAACCGGACA-CTGAGACA------TC-GGACATTC-CG-GTCCG-------GTGTA-AAAAAGGA-TGCATCGGACCTGAGGC-ACTGTA------T-AC-ATCGGTC-AGGTCCGATGCATCGGACCTGAGGCACTGT-------TACATCGGTC-AGGTCCGATGGTCCG-ATGTC-TTTCGCATAGACT
Reference ( family-2193 ) : GTCTATGCGAAAGTTT-TTTT-G-G-CCACACAGGACATTCGGTCC-T----GTGTA-----CTCAATGAACAC-ACGGGACCGAACCA-AATTTT-GTC---GGACC-GAA-A-AAC---------CTA--------AT--------GT-AAAA--------A-A---------C---GTGAA-AATGCAG---AACCAA-GGAAATC--T-----TATTT-ATTATAC---T-AATAC----T--ATTGAT---------ATTTT-ATGTTTTCAA-A-----TCCAG-GNAT-CGCTC---------CCGCATA---------ATNCT-----TGAGA-CAGT-CCATG-CGG-TTTT--AATCAC-------ACTCA-TTTA-C---GTACTTGTGAT--T-TT-TGTGCGAT--------------ACAAATTTTT-AA--TA-CTCC-TGTCAAAA-------------CA-G--T--AAAAC---TCAAAACCGGACA-CTGAGACA------TC-GGACATTC-CG-GTCCG-------GTGTA-AAAAANGA-TGCATCGGACCTGAGGC-ACTGTAT-----T-AC-ATCGGTC-AGGTCNGATGCATCGGACCTGAGGCACTGT-------TACATCGGTC-AGGTCCGATGGTCCG-ATGTC-TTTCGCATAGACT
gi|1 : GTCTATGCGAAAGTTTATTTT-G-G-CCCCACAGGACATTCTGTTC-T----GTGTA-----CTCAATGAACAA-ACAGGACCGAACCA-AATTTT-G-----AGACG-AAA-A-AAC---------CTA--------AT--------GT-GAAA--------C-A---------T---GAGAA-AATGCAG---AACCAA-GGAAATC--T-----TATTT-ATTATAC---T-AATAC----T--ATTGAT---------ATCTT-AT-TCTTC---------TCT-G-GCAT-CGCTC---------CCGCATA---------ATACT-----TGAGA-CGGT-CCATG-CGG-TTTT--AATCAC-------ACTCA-TTTA-C---GTACATGTAATGGTACT-TGAGCGAT--------------ACACATTTTTTAA--CAACTCCATGTCAAAA-------------CA-G--T--AAAAC---TCAAAATTGGACA-CTGAGACA------TC-GGACATTC-CA-GTCCG-------GTGTT-AAAAAGGA-TGCATAAGACCTGAGGC-ACTGTACATATGC-AC-ATCGGTC-AGG-NGGATGCATAAGACTTGAGGCACTGTACATATGCACATCGGTC-AGGTCTGATGGTCTGTATGTC-TTTCGCATAGACT
gi|10 : TGCAG---AACCAA-GGAAATC--G-----TATTT-ATTATAC---T-AATAC----T--GTTGAT---------ATTTC-ATGTTTTCAACAGACT-TCCAG-AGAT-TGCTC---------CTGAAAA---------ATTGT-----TGAGA-TAGT-CCATG-CAG-TTTT--AATCAC-------ACTAA-TTTA-A---TTACTT
gi|10 : --T--AAAAC------AAACTGGAAA-C--AGACA------TC-AGACATTC-TG-GTCGGAGGTCCTGTGTA-CAAAAGGA-TGCATCGGTCCTGAGAA-ACTG--------T-AC-ATCGGTC-AGGTCTGATGaaaacaaactggaaacagacatcagacattctggtcggaggtcctgtgtacaaaaggatgcatcggtcctgagaaactgtacatcggtcaggtctgatggtccaatgtctttcgcgtaaact
gi|10 : tgcagaaccaaggaaatcgtatttattatactaatactgttgatatttcatgttttcaacagacttccagagattgctcctgaaaaattgttgagatagtccatgcagttttaatcacactaatttaattactGATGGTCCA-ATGTC-TTTCGCGTAAACTgtccaatgtctttcgcgtaaact
gi|11 : tgcagaaccaaggaaatcgtatttattatactaatactgttgatatttcatgttttcaacagacttccagagattgctcctgaaaaattgttgagatagtccatgcagttttaatcacactaatttaattacttaaaacaaactggaaacagacatcagacattctggtcggaggtcctgtgtacaaaaggatgcatcggtcctgagaaactgtacatcggtcaggtctATGAACAC-ACAGGACAAAACCA-AATT---GTC---AGACT-TAA-A-AAC---------TTAG-------AT--------GT-AAAAGAAGTG--A-A---------CACTGTGAA-AATGCAG---AACCAA-GGAAATC--TTAAAATATTA-ACTATACCTTT-AATTA----T--ATTGATGAAAGTCAAATTTT----TTTTTAA-A-----
gi|12 : gtATGAACAC-ACAGGACCAAACCA-AATT---GTC---AGACTTAAA-A-AAC---------TTA--------AT--------GT-AAAA--------A-AGTGAAAACAC---TTGAA-AATGCAG---AACCAA-GGAAATC--T-----TAAAT-ATTA-AC---T-AATACT---T--ATT-AT---------ATTAT--TGAATTCAA-A-----aaacctatcaaacccaataagcgaggaaattgattcagagatgaatcaaacatt
gi|13 : ACAC-ACAGGACCAAACCA-AATT---GTC---AGACT-TAA-A-AAC---------TTA--------AT--------GT-AAAA--------A-AGTGAAACA-C---TTGAA-AATGCAG---AACCAA-GGAAATC--T-----TAAAT-ATTA-AC---T-AATAC----TTAATT-AT---------A-TTG-ATGAATTCAA-A-----attttttttttaaaaaacctatcaaaccaataa
gi|14 : TCAATTAACAC-ACAGGACCAAACCA-AATTCT-GTC---CGACC-G-A-A-AAC---------TTT--------AT--------GT-AAAA--------A-A---------T----TGAA-AATGCAG---AACCAA-GGAAATA--T-----Tatttttttttaaaaacctatcaaaccaataa
gi|15 : GTCTATGCGAAAGTTT-TTTT-G-GGCCATACAGGACATTCAGTCC-T----GTGTA-----CTCAATGAACAC-AC
gi|16 : aGTCTACGTAAAAGTTT-TTTG-G-GGCCACACAGGACATTCGGTCC-A----GTGTG-----CTCAATGAACA
gi|2 : aGTATATGCGAAAGTTT-TTTTTA-G-CCACACAGGACATTCGGTCC-TTAGTATGTA-----CTCAATGAATAC-ACGGGACTGAACCA-AATTTT-GTC---GAACC-AAA-A-AAC---------CTA--------AT--------GT-AAAATAGGTGAAACA---------C---GTGAA-GATGCAG---AACCAA-GGAAATC--G-----TATTT-ATTATAC---T-AATAC----T--ATTGAT---------ATTTC-ATGTTTTCAACAGACT-TTCAG-AGAT-TGCTC---------CTGCAGA---------ATTGTTA---TGAGA-CAGT-CCACG-CGG-TTTT--AATCAC-------ACTGA-TTTA-A---TTACTT-----------------AAA--------------ACAAAC-------------------TCACAA-------------CT-C--T--A-AAC---CGAAAAC--------TGAGACA------TT-GAACATTC-TG-GTCAT-------GTGTA-CAAAAGGA-TGCATCGGACCTGAGAC-ACTG--------T-AC-ATCAGTC-TGGTCCGATGt
gi|3 : GTCTATGTGAAAGTTT-TT---GAG-CCACACGGGACATTTGGTCC-T----ATCTATATTACTCAATGAACAC-ACAGGATTAAATCA-AATTTT-GTC---GGACC-GAC-A-TAC---------CTC--------AT--------GT-AAAA--------A-A----------------------GCAG---AACCAA-GGAAATC-----------TT-ATTATAC---C-AATAC----T--ATTGAT---------ATTTT-ATGTTTTCAA-GACT--TCCAG-AGAT-TGTTC---------CCGCATA---------AAACTTGTAATGAGA-CGGT-ACATG--------T--A--TGT-------GGTCA-TTTA-CA--ATGCTTG-GAT--T-AT-TGTGCAGT------------------ATTTTT-A--------CC-T---AAAA-------------C---------AAACCT-TCAAAACCGGACACCTGAGACA------TCAAGACATTCTTG-GTACT-------GTGTA-CAAAA-GA-TGCATCGGACTTG-----------------T-AC-ATCGGTC-AGGTCTG-----TCGG-TCTGAtcttttgcataga
gi|3 : aGATGCATCGGACTTG----------------TACATCGGTC-AGGTCTGTCGGTCTG-ATGTCTTTTCGCATAGACTtgtcttttcgcatagact
gi|4 : agtctatgtgaaagtttttgagccacacgggacatttggtcctatctatattactcaatgaacacacaggattaaatcaaattttgtcggaccgacatacctcatgtaaaaaagcagaaccaaggaaatcttattataccaatactattgatattttatgttttcaagacttccagagattgttcccgcataaaacttgtaatgagacggtacatgtatgtggtcatttacaatgcttggattattgtgcagtatttttacctaaaacaaaccttcaaaaccggacacctgagacatcaagacattcttggtactgtgtacaaaa-T----GTGTA-----CTCGATGAACAC-AGGGGACCAAACCA-AATTTT-GTC---AAATC-GGA-A-AAC---------CTA--------TT--------GT-AAAA--------A-A---------A---ATAAATAATGCAG---AACCAA-GGAAATC--T-----TATTT-ATTATTC---T-AATACTATAT--ATTGAT---------ATCTT-AT-TTTTC---------TCT-G-GCAT-CATTC---------CTGCATA---------AT---------------------ATG-CGG-TTTA--AATCAT-------AATCA-TTTA-C---GTATTTG-AA-----TT-TGTGCAATATTTTTTACCTAAAACAAACTTTT-AAATTA-CTCTGTGTCAAAA-------------TA-G--T--AAAACTTGTCAGAACCAAACA-CTGAGACA------TC-GGACATTT-CA-GTCCA-------TTGTA-AAAAATGA-CACATCGGACTTAAGGC-ACTG--------T-AC-ATCATTC-AGGT
gi|4 : GACACATCGGACTTAAGGCACTGT--------ACATCATTC-AGGTACAGTGGCCTG-ATGTC-TTTCGCATAGACTacagtggcctgatgtctttcgcatagact
gi|5 : tgtgtactcgatgaacacaggggaccaaaccaaattttgtcaaatcggaaaacctattgtaaaaaaaataaataatgcagaaccaaggaaatcttatttattattctaatactatatattgatatcttatttttctctggcatcattcctgcataatatgcggtttaaatcataatcatttacgtatttgaatttgtgcaatattttttacctaaaacaaacttttaaattactctgtgtcaaaatagtaaaacttgtcagaaccaaacactgagacatcggacatttcagtccattgtaaaaaatTCAAT-AACACTACGAAAGAGACATA-AATTTC-GTCCGCAGCCC-GAG-A-AATAAGGACATTTTA--------TT--------GTTAAAA--------A-A---------T---TTGAA-AATGCAACTCAACCAA-GGAA---------------------TA----T-AATAC----T--ATTGAT---------ATTT----ATTCTC---------T---G-GCAT-CGCTC---------CCGCATA---------ATACT-----TGAGAACA-T-CCATT-TGG-TTTC--AGTCACGCTCTCAACTCG-TTTA-TTTAGTACCTA-GAT--T-TC-TGTG--AT--------------A----TTTTT-----TG-CTTT-AAACAAAAATTTAAATGAGTCCATG--T--CAAAC---TATAAACCAGACA-CTGAGGCA------TC-GGACATTC-TA-GTCTG-------GTGTA-AAAAATGT-TGCATCAAACCTGAGGC-ACTG--------T-GC-ATCAGTC-AGGTCTGTTGCAT
gi|6 : atgttaacctGTCTATGCGAAAGTTT-TT--------------GGGT----GGTCCCT----GTGTA-----CTCAATGAACGC-ACCG-ACCGCACCACAATTTTTGTC---GGCCC-GAA-ACAAC---------CTA--------AT--------GT-AAAAGTGA----A-A---------CAG-GCGAA-AATGCAG---AAACAAAGGAAAT-------------T-CTTGTAC---------------------AG---------CTTTT-----TTTCTA--------CCAG-GGAT-CGCTC---------C-GCATA---------ATTCT-----TGAGA-CAGT-CCATG-CGGTTTTT--AATCTA-------ATTCT-TTTA-C---ATACTT-TGCT--T-TTCTGTGC--T------------------ATTTTT-GG--T--CT-C-TGTCAAAA-------------TA-GTTT--AAAAC---TC-AAACCGGACA-CTGA-------------AGA-ATTC-CATGTCCG-------GTGT--AAGTATTA-TGCATCGGACCCGAGGCGACGTTAT-----CAAC-ATTGGTC-AGGTCCGATGCagaatgtg
gi|7 : GTCTATGCGAAAGTTT-TT--------------GGGT----GGTCC-T----GTGTA-----CTCAATGAACGC-AACCGACCGACCCA-ATTTTTTGTC---GGACC-GAACA-AGC---------CTA--------AT--------GT-AAAAGTGAA---A-A---------CAG-GCGAA-AATGCAG---AAACAA-AGGAATT--C-----T---------------T-AGTAC-----------AG---------CTTTT----TCTTCTA--------CCAG-GGATTCGCCT---------CCGCATA---------AT-CT-----TGAGA-CAGT-CCATG-CGG-TTTTT-AATCTA-------ATTCT-TTTAAC---ATACTTG--GT--T-TT-TCTGTGCT--------------A----TTTTT-GG--T--CTC--TGTCAAAA-------------TA-G--TTTAAAAC---TCAAA--CGGACA-CTGAGA---------------ATTC-CATGTCCG-------GTGTA-AGTA-TTA-TGCATCGGACCCGAGGC-ACT-TAT-----C-ACAATTGGTC-AGGTCCGATGCttttcacacagacaa
gi|7 : a-GTTCT-------GTGTG-AAA-------GCATCGGACCTGACCA-ATTGTGA-----T-AA-GTGCCTC-GGGTCCGATGCATtttcacacagaac
gi|8 : agtctatgcgaaagtttttgggtggtcctgtgtactcaatgaacgcaaccgaccgacccaattttttgtcggaccgaacaagcctaatgtaaaagtgaaaacaggcgaaaatgcagaaacaaaggaattcttagtacagctttttcttctaccagggattcgcctccgcataatcttgagacagtccatgcggtttttaatctaattcttttaacatacttggtttttctgtgctatttttggtctctgtcaaaatagtttaaaactcaaacggacactgagaattccatgtccggtgtaagtattACCAA-GGAAATCGTT-----TATTTTATTATAC---A-CATAC----T--G-TGAT---------ATTTTCATGTTTTCAACAGGACTTCCAGAGCAT-TGCTCTGAAAAAAACACCATAAACGAAAATATTGT-----TGAGA-TAGTCCCATGCCAG-TCTTTAAATCAC-------ACTAACTTTA-------AC-----AT--T-----------C--------------AC---TCTTT-AA---A-C------ACAAAA-------------CT-G--G--ATAAC-------AAC---ACT-CCAAGACATTCTGGTC-GGA-------G-GTCCT-------GTGTACAAAAGGGACTGCATCGGTCCTGAGAA-ACTG--C-----T-AC-ATCGGTCAAGGTCTGATG
gi|8 : gacTGCATCGGTCCTGAGAAACTGC-------TACATCGGTCAAGGTCTGATGGTCCA-ATGTC-TCTgtccaatgtctctttc
gi|9 : gacaccaaggaaatcgtttattttattatacacatactgtgatattttcatgttttcaacaggacttccagagcattgctctgaaaaaaacaccataaacgaaaatattgttgagatagtcccatgccagtctttaaatcacactaactttaacattcactctttaaacacaaaactggataacaacactccaagacattctggtcggaggtcctgtgtacaaaagggacCAC-ATGGGACCGAACCA-AATTTT-GTC---AGACA-GAA-A-AGC---------CTATAACGTGTATATAAAACAGT-AAAA--------C-A---------C---GTGAA-AATACAG---AACCAA-GGAAATT--T-----TATTC-ATTATAC---TAAATAC----T--GTTGAT---------ATTTT-AT-TCTTCttc
gi|9 : atgcatg-TGACAAAA-------------CA-G--T--AAAAC---TTAAAACAGGACA-CTGAGACA------TC-AAACATTT-TG-GTCTG-------GTGTA-AAAAAGGA-TGCATCAGACCTGAGGC-ACTGTAT----------ATTGGTC-AGGTTCGATGtctggcaaacatgacaaaacagtaaaacttaaaacaggacactgagacatcaaacattttggtctggtgtaaaaaaggatgcatcagacctgaggcactgtatattggtcaggttcgatggtccaatgtctttcacatagactg
gi|9 : atgcatgcacatgggaccgaaccaaattttgtcagacagaaaagcctataacgtgtatataaaacagtaaaacacgtgaaaatacagaaccaaggaaattttattcattatactaaatactgttgatattttattcttctctggcaaacaGATGCATCAGACCTGAGGCACTGT--------ATATTGGTC-AGGTTCGATGGTCCA-ATGTC-TTTCACATAGACTgtccaatgtctttcacatagactg
Alignments
lowQualScore : 1111111111111111111111111111111111111111111111111111111111111
lowQualScore : 3333333 1111 11111 111111111 11111111 11111111 7777777777777777777777777 11111111111111 1111111 111111111 1111 444444444 111111111 2222222222222222222 11 1111111 222222 2222222222222222222222222222222222222222222222222222222222222 3333333333333333333333 111111 111111 222222222222 222222222222222 44444444
lowQualScore : 5 6666666 1 5 5 0000 22222 3 2 3 999 7777 3 3 3 333333333 55555555 22222222 3 0000000000000000000000000 3 555 2 33333333333333 0 66666 0000000 1 222222222 7777 999999999 4 4 4 777777777 3 4444444444444444444 4 4 4 4 00 4444444 4 333333 1 5555555555555555555555555555555555555555555555555555555555555 1111111111111111111111 888888 0 4 111111 4 2 9999 2 55 99999 3 2 555555555555 2 77777 2 444444444444444 3 99999999 8 8
lowQualScore : . ....... . . . .... ..... . . . ... .... . . . ......... ........ ........ . ......................... . ... . .............. . ..... ....... . ......... .... ......... . . . ......... . ................... . . . . .. ....... . ...... . ............................................................. ...................... ...... . . ...... . . .... . .. ..... . . ............ . ..... . ............... . ........ . .
lowQualScore : 7 1111111 3 0 0 6666 55555 1 2 3 444 2222 3 3 3 333333333 44444444 11111111 3 9999999999999999999999999 3 444 9 88888888888888 4 44444 5555555 5 333333333 9999 333333333 6 4 4 888888888 7 3333333333333333333 4 4 4 4 66 4444444 4 222222 0 6666666666666666666666666666666666666666666666666666666666666 1111111111111111111111 333333 7 0 555555 0 5 8888 8 00 88888 3 9 999999999999 9 11111 9 444444444444444 5 44444444 0 0
consensus : GTCTATGCGAAAGTTT-TTTT-G-G-CCACACAGGACATTCGGTCC-T----GTGTA-----CTCAATGAACAC-ACGGGACCGAACCA-AATTTT-GTC---GGACC-GAA-A-AAC---------CTA--------AT--------GT-AAAA--------A-A---------C---GTGAA-AATGCAG---AACCAA-GGAAATC--T-----TATTT-ATTATAC---T-AATAC----T--ATTGAT---------ATTTT-ATGTTTTCAA-A-----TCCAGGG-AT-CGCTC---------CCGCATA---------ATNCT-----TGAGA-CAGT-CCATG-CGG-TTTT--AATCAC-------ACTCA-TTTA-C---GTACTTG----GATTTT-TGTGCGATAC---------------A-ATTTTT-AA--TA-CTCC-TGNCAAAA-------------CA-G--T--AAAAC---TCAAAACCGGACA-CTGAGACA------TC-GGACATTC-CG-GTCCGGTGTA-AAAAANGA-TGCATCGGAC-CTGAGGC-ACTGT-A------T--AC-ATCGG-----TC-AGGTCC------------GATGCATCGGACCTGAGGCACTGT--------ACATCGGTCAGGTCCGATGGTCCG-ATGTC-TTTCGCATAGACT
Reference ( family-2193 ) : GTCTATGCGAAAGTTT-TTTT-G-G-CCACACAGGACATTCGGTCC-T----GTGTA-----CTCAATGAACAC-ACGGGACCGAACCA-AATTTT-GTC---GGACC-GAA-A-AAC---------CTA--------AT--------GT-AAAA--------A-A---------C---GTGAA-AATGCAG---AACCAA-GGAAATC--T-----TATTT-ATTATAC---T-AATAC----T--ATTGAT---------ATTTT-ATGTTTTCAA-A-----TCCAGGG-AT-CGCTC---------CCGCATA---------ATNCT-----TGAGA-CAGT-CCATG-CGG-TTTT--AATCAC-------ACTCA-TTTA-C---GTACTTG----GATTTT-TGTGCGATAC---------------A-ATTTTT-AA--TA-CTCC-TGTCAAAA-------------CA-G--T--AAAAC---TCAAAACCGGACA-CTGAGACA------TC-GGACATTC-CG-GTCCGGTGTA-AAAAAGGA-TGCATCGGAC-CTGAGGC-ACTGT-A------T--AC-ATCGG-----TC-AGGTCC------------GATGCATCGGACCTGAGGCACTGT-------TACATCGGTCAGGTCCGATGGTCCG-ATGTC-TTTCGCATAGACT
gi|1 : GTCTATGCGAAAGTTTATTTT-G-G-CCCCACAGGACATTCTGTTC-T----GTGTA-----CTCAATGAACAA-ACAGGACCGAACCA-AATTTT-G-----AGACG-AAA-A-AAC---------CTA--------AT--------GT-GAAA--------C-A---------T---GAGAA-AATGCAG---AACCAA-GGAAATC--T-----TATTT-ATTATAC---T-AATAC----T--ATTGAT---------ATCTT-AT-TCTTC---------TCT-GGC-AT-CGCTC---------CCGCATA---------ATACT-----TGAGA-CGGT-CCATG-CGG-TTTT--AATCAC-------ACTCA-TTTA-C---GTACATGTAATGGTACT-TGAGCGATAC---------------ACATTTTTTAA--CAACTCCATGTCAAAA-------------CA-G--T--AAAAC---TCAAAATTGGACA-CTGAGACA------TC-GGACATTC-CA-GTCCGGTGTT-AAAAAGGA-TGCATAAGAC-CTGAGGC-ACTGT-ACATATGC--AC-ATCGG-----TC-AGG-NG------------GATGCATAAGACTTGAGGCACTGTACATATGCACATCGGTCAGGTCTGATGGTCTGTATGTC-TTTCGCATAGACT
gi|10 : TGCAG---AACCAA-GGAAATC--G-----TATTT-ATTATAC---T-AATAC----T--GTTGAT---------ATTTC-ATGTTTTCAACAGACT-TCCAGAG-AT-TGCTC---------CTGAAAA---------ATTGT-----TGAGA-TAGT-CCATG-CAG-TTTT--AATCAC-------ACTAA-TTTA-A---TTACTT
gi|10 : --T--AAAAC------AAACTGGAAA-C--AGACA------TC-AGACATTC-TG-GT-----------------------CGGA------GGT-CCTGT-G------T--AC-A----------A-AAG---------------GATGCATCGGTCCTGAGAAACTGT--------ACATCGGTCAGGTCTGATGGTCCA-ATGTC-TTTCGCGTAAACTaaaacaaactggaaacagacatcagacattctggtcggaggtcctgtgtacaaaaggatgcatcggtcctgagaaactgtacatcggtcaggtctgatggtccaatgtctttcgcgtaaact
gi|11 : tgcagaaccaaggaaatcgtatttattatactaatactgttgatatttcatgttttcaacagacttccagagattgctcctgaaaaattgttgagatagtccatgcagttttaatcacactaatttaattactATGAACAC-ACAGGACAAAACCA-AATT---GTC---AGACT-TAA-A-AAC---------TTAG-------AT--------GT-AAAAGAAGTG--A-A---------CACTGTGAA-AATGCAG---AACCAA-GGAAATC--TTAAAATATTA-ACTATACCTTT-AATTA----T--ATTGATGAAAGTCAAATTTT----TTTTTAA-A-----
gi|12 : gtATGAACAC-ACAGGACCAAACCA-AATT---GTC---AGACTTAAA-A-AAC---------TTA--------AT--------GT-AAAA--------A-AGTGAAAACAC---TTGAA-AATGCAG---AACCAA-GGAAATC--T-----TAAAT-ATTA-AC---T-AATACT---T--ATT-AT---------ATTAT--TGAATTCAA-A-----aaacctatcaaacccaataagcgaggaaattgattcagagatgaatcaaacatt
gi|13 : ACAC-ACAGGACCAAACCA-AATT---GTC---AGACT-TAA-A-AAC---------TTA--------AT--------GT-AAAA--------A-AGTGAAACA-C---TTGAA-AATGCAG---AACCAA-GGAAATC--T-----TAAAT-ATTA-AC---T-AATAC----TTAATT-AT---------A-TTG-ATGAATTCAA-A-----attttttttttaaaaaacctatcaaaccaataa
gi|14 : TCAATTAACAC-ACAGGACCAAACCA-AATTCT-GTC---CGACC-G-A-A-AAC---------TTT--------AT--------GT-AAAA--------A-A---------T----TGAA-AATGCAG---AACCAA-GGAAATA--T-----Tatttttttttaaaaacctatcaaaccaataa
gi|15 : GTCTATGCGAAAGTTT-TTTT-G-GGCCATACAGGACATTCAGTCC-T----GTGTA-----CTCAATGAACAC-AC
gi|16 : aGTCTACGTAAAAGTTT-TTTG-G-GGCCACACAGGACATTCGGTCC-A----GTGTG-----CTCAATGAACA
gi|2 : aGTATATGCGAAAGTTT-TTTTTA-G-CCACACAGGACATTCGGTCC-TTAGTATGTA-----CTCAATGAATAC-ACGGGACTGAACCA-AATTTT-GTC---GAACC-AAA-A-AAC---------CTA--------AT--------GT-AAAATAGGTGAAACA---------C---GTGAA-GATGCAG---AACCAA-GGAAATC--G-----TATTT-ATTATAC---T-AATAC----T--ATTGAT---------ATTTC-ATGTTTTCAACAGACT-TTCAGAG-AT-TGCTC---------CTGCAGA---------ATTGTTA---TGAGA-CAGT-CCACG-CGG-TTTT--AATCAC-------ACTGA-TTTA-A---TTACTTA----AA-------------AC---------------A-A-----------A-CTC---------A-------------CA----------AC---TCTAAACCGAAAA-CTGAGACA------TT-GAACATTC-TG-GTCATGTGTA-CAAAAGGA-TGCATCGGAC-CTGAGAC-ACTG---------T--AC-ATCAG-----TC-TGGTCC------------GATGt
gi|3 : GTCTATGTGAAAGTTT-TT---GAG-CCACACGGGACATTTGGTCC-T----ATCTATATTACTCAATGAACAC-ACAGGATTAAATCA-AATTTT-GTC---GGACC-GAC-A-TAC---------CTC--------AT--------GT-AAAA--------A-A----------------------GCAG---AACCAA-GGAAATC-----------TT-ATTATAC---C-AATAC----T--ATTGAT---------ATTTT-ATGTTTTCAA-GACT--TCCAGAG-AT-TGTTC---------CCGCATA---------AAACTTGTAATGAGA-CGGT-ACATG--------T--A--TGT-------GGTCA-TTTA-CA--ATGCTTG----GATTAT-TGTGCAGT-------------------ATTTTT-A--------CC-T---AAAA-------------C---------AAACCT-TCAAAACCGGACACCTGAGACA------TCAAGACATTCTTG-GTACTGTGTA-CAAAA-GA-TGCATCGGAC-TTG------------------T--AC-ATCGG-----TC-AGGTCT------------G-----TCGG-TCTGAtcttttgcataga
gi|3 : aGGT-ACTGT-G------T--AC-A------------AAA---------------GATGCATCGGACTTG----------------TACATCGGTCAGGTCTGTCGGTCTG-ATGTCTTTTCGCATAGACTtgtcttttcgcatagact
gi|4 : agtctatgtgaaagtttttgagccacacgggacatttggtcctatctatattactcaatgaacacacaggattaaatcaaattttgtcggaccgacatacctcatgtaaaaaagcagaaccaaggaaatcttattataccaatactattgatattttatgttttcaagacttccagagattgttcccgcataaaacttgtaatgagacggtacatgtatgtggtcatttacaatgcttggattattgtgcagtatttttacctaaaacaaaccttcaaaaccggacacctgagacatcaagacattctt-T----GTGTA-----CTCGATGAACAC-AGGGGACCAAACCA-AATTTT-GTC---AAATC-GGA-A-AAC---------CTA--------TT--------GT-AAAA--------A-A---------A---ATAAATAATGCAG---AACCAA-GGAAATC--T-----TATTT-ATTATTC---T-AATACTATAT--ATTGAT---------ATCTT-AT-TTTTC---------TCT-GGC-AT-CATTC---------CTGCATA---------AT---------------------ATG-CGG-TTTA--AATCAT-------AATCA-TTTA-C---GTATTTG----AA--TT-TGTGCAATATTTTTTACCTAAAACAA-ACTTTT-AAATTA-CTCTGTGTCAAAA-------------TA-G--T--AAAACTTGTCAGAACCAAACA-CTGAGACA------TC-GGACATTT-CA-GTCCATTGTA-AAAAATGA-CACATCGGAC-TTAAGGC-ACTG---------T--AC-ATCAT-----TC-AGGTAC------------AGTG
gi|4 : C-ACTG--A------G--AC-ATCGGACATTTC-AG-TCCATTGTAAAAAATGACACATCGGACTTAAGGCACTGT--------ACATCATTCAGGTACAGTGGCCTG-ATGTC-TTTCGCATAGACTgcctgatgtctttcgcatagact
gi|5 : tgtgtactcgatgaacacaggggaccaaaccaaattttgtcaaatcggaaaacctattgtaaaaaaaataaataatgcagaaccaaggaaatcttatttattattctaatactatatattgatatcttatttttctctggcatcattcctgcataatatgcggtttaaatcataatcatttacgtatttgaatttgtgcaatattttttacctaaaacaaacttttaaattactctgtgtcaaaatagtaaaacttgtcagaaccaaaTCAAT-AACACTACGAAAGAGACATA-AATTTC-GTCCGCAGCCC-GAG-A-AATAAGGACATTTTA--------TT--------GTTAAAA--------A-A---------T---TTGAA-AATGCAACTCAACCAA-GGAA---------------------TA----T-AATAC----T--ATTGAT---------ATTT----ATTCTC---------T---GGC-AT-CGCTC---------CCGCATA---------ATACT-----TGAGAACA-T-CCATT-TGG-TTTC--AGTCACGCTCTCAACTCG-TTTA-TTTAGTACCTA----GATTTC-TGTG--ATA-------------------TTTTT-----TG-CTTT-AAACAAAAATTTAAATGAGTCCATG--T--CAAAC---TATAAACCAGACA-CTGAGGCA------TC-GGACATTC-TA-GTCTGGTGTA-AAAAATGT-TGCATCAAAC-CTGAGGC-ACTG---------T--GC-ATCAG-----TC-AGGTCT------------GTTGCAT
gi|6 : atgttaacctGTCTATGCGAAAGTTT-TT--------------GGGT----GGTCCCT----GTGTA-----CTCAATGAACGC-ACCG-ACCGCACCACAATTTTTGTC---GGCCC-GAA-ACAAC---------CTA--------AT--------GT-AAAAGTGA----A-A---------CAG-GCGAA-AATGCAG---AAACAAAGGAAAT-------------T-CTTGTAC---------------------AG---------CTTTT-----TTTCTA--------CCAGGG-AT-CGCTC---------C-GCATA---------ATTCT-----TGAGA-CAGT-CCATG-CGGTTTTT--AATCTA-------ATTCT-TTTA-C---ATACTTT----GCTTTTCTGTGC--T-------------------ATTTTT-GG--T--CT-C-TGTCAAAA-------------TA-GTTT--AAAAC---TC-AAACCGGACA-CTGA-------------AGA-ATTC-CATGTCCGGTGT--AAGTATTA-TGCATCGGAC-CCGAGGCGACGTT-A------TCAAC-ATTGG-----TC-AGGTCC------------GATGCagaatgtg
gi|7 : GTCTATGCGAAAGTTT-TT--------------GGGT----GGTCC-T----GTGTA-----CTCAATGAACGC-AACCGACCGACCCA-ATTTTTTGTC---GGACC-GAACA-AGC---------CTA--------AT--------GT-AAAAGTGAA---A-A---------CAG-GCGAA-AATGCAG---AAACAA-AGGAATT--C-----T---------------T-AGTAC-----------AG---------CTTTT----TCTTCTA--------CCAGGG-ATTCGCCT---------CCGCATA---------AT-CT-----TGAGA-CAGT-CCATG-CGG-TTTTT-AATCTA-------ATTCT-TTTAAC---ATACTTG----G-TTTT-TCTGTGCTA-------------------TTTTT-GG--T--CTC--TGTCAAAA-------------TA-G--TTTAAAAC---TCAAA--CGGACA-CTGAGA---------------ATTC-CATGTCCGGTGTA-AGTA-TTA-TGCATCGGAC-CCGAGGC-ACT-T-A------TC-ACAATTGG-----TC-AGGTCC------------GATGCttttcacacagacaa
gi|7 : a-GTTCTGTGTG-AAA-------GCATCGGAC-CTGACCA-ATTGTGA------T--AA-GTGCC-----TC-GGGTCC------------GATGCATtttcacacagaac
gi|8 : agtctatgcgaaagtttttgggtggtcctgtgtactcaatgaacgcaaccgaccgacccaattttttgtcggaccgaacaagcctaatgtaaaagtgaaaacaggcgaaaatgcagaaacaaaggaattcttagtacagctttttcttctaccagggattcgcctccgcataatcttgagacagtccatgcggtttttaatctaattcttttaacatacttggtttttctgtgctatttttggtctctgtcaaaatagtttaaaactcaaacggacactgagaattccatgtccggtgtaagtattACCAA-GGAAATCGTT-----TATTTTATTATAC---A-CATAC----T--G-TGAT---------ATTTTCATGTTTTCAACAGGACTTCCAGAGCAT-TGCTCTGAAAAAAACACCATAAACGAAAATATTGT-----TGAGA-TAGTCCCATGCCAG-TCTTTAAATCAC-------ACTAACTTTA-------AC--------ATT------------C---------------A-CTCTTT-AA---A-C------ACAAAA-------------CT-G--G--ATAAC-------AAC---ACT-CCAAGACATTCTGGTC-GGA-------G-GTCCTGTGTACAAAAGGGACTGCATCGGTC-CTGAGAA-ACTGC--------T--AC-ATCGG-----TCAAGGTCT------------GATG
gi|9 : gacCAC-ATGGGACCGAACCA-AATTTT-GTC---AGACA-GAA-A-AGC---------CTATAACGTGTATATAAAACAGT-AAAA--------C-A---------C---GTGAA-AATACAG---AACCAA-GGAAATT--T-----TATTC-ATTATAC---TAAATAC----T--GTTGAT---------ATTTT-AT-TCTTCgtccaatgtctctttc
gi|9 : atgcatg-TGACAAAA-------------CA-G--T--AAAAC---TTAAAACAGGACA-CTGAGACA------TC-AAACATTT-TG-GTCTGGTGTA-AAAAAGGA-TGCATCAGAC-CTGAGGC-ACTGT-A------T-----ATTGG-----TC-AGGTTC------------GATGtctggcaaacatgacaaaacagtaaaacttaaaacaggacactgagacatcaaacattttggtctggtgtaaaaaaggatgcatcagacctgaggcactgtatattggtcaggttcgatggtccaatgtctttcacatagactg
gi|9 : atgcatgcacatgggaccgaaccaaattttgtcagacagaaaagcctataacgtgtatataaaacagtaaaacacgtgaaaatacagaaccaaggaaattttattcattatactaaatactgttgatattttattcttctctggcaaacaGGACACTGAGAC-ATCAA-A------C--AT-TTTGG-----TC-TGGTGTAAAAAAG-----GATGCATCAGACCTGAGGCACTGT--------ATATTGGTCAGGTTCGATGGTCCA-ATGTC-TTTCACATAGACTgtccaatgtctttcacatagactg
Alignments
lowQualScore : 11111111111111111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 3333333 1111 11111 111111111 11111111 11111111 7777777777777777777777777 11111111111111 1111111 111111111 1111 444444444 111111111 2222222222222222222 11 1111111 222222 55555555555555555555555555555555555555555555555555555555555555555555555555555555555555555 111111 111111 1111 33333333333 222222222222 44444444 1
lowQualScore : 5 6666666 1 5 5 0000 22222 3 2 3 999 7777 3 3 3 333333333 55555555 22222222 3 0000000000000000000000000 3 555 2 33333333333333 0 66666 0000000 1 222222222 7777 999999999 4 4 4 777777777 3 4444444444444444444 4 4 4 4 00 4444444 4 333333 1 55555555555555555555555555555555555555555555555555555555555555555555555555555555555555555 888888 99 111111 4 7 1111 1 4 4 4 3 3 44444444444 3 88888 3 777777777777 3 88888888 3 0 3
lowQualScore : . ....... . . . .... ..... . . . ... .... . . . ......... ........ ........ . ......................... . ... . .............. . ..... ....... . ......... .... ......... . . . ......... . ................... . . . . .. ....... . ...... . ......................................................................................... ...... .. ...... . . .... . . . . . . ........... . ..... . ............ . ........ . . .
lowQualScore : 7 1111111 3 0 0 6666 55555 1 2 3 444 2222 3 3 3 333333333 44444444 11111111 3 9999999999999999999999999 3 444 9 88888888888888 4 44444 5555555 5 333333333 9999 333333333 6 4 4 888888888 7 3333333333333333333 4 4 4 4 66 4444444 4 222222 0 11111111111111111111111111111111111111111111111111111111111111111111111111111111111111111 333333 55 555555 0 5 4444 6 0 9 0 6 3 99999999999 3 33333 3 999999999999 2 33333333 7 7 3
consensus : GTCTATGCGAAAGTTT-TTTT-G-G-CCACACAGGACATTCGGTCC-T----GTGTA-----CTCAATGAACAC-ACGGGACCGAACCA-AATTTT-GTC---GGACC-GAA-A-AAC---------CTA--------AT--------GT-AAAA--------A-A---------C---GTGAA-AATGCAG---AACCAA-GGAAATC--T-----TATTT-ATTATAC---T-AATAC----T--ATTGAT---------ATTTT-ATGTTTTCAA-A-----TCCAGGG-AT-CGCTC---------CCGCATA---------ATNCT-----TGAGA-CAGT-CCATG-CGG-TTTT--AATCAC-------ACTCA-TTTA-C---GTACTTG----GATTTT-TGTGC--TAC---------------A-ATTTTT-AA--TA-CTCC-TGNCAAAA-------------CA-G--T--AAAAC---TCAAAACCGGACA--CTGAGACA------TC-GGACATTC-CG-GTCCGGTGTA-AAAAAGGA-TGCATCGGAC-CTGAGGC-ACTG-A------T--AC-ATCGG-----TC-AGGTCC------------GATGCATCGGACCTGAGGCACTGT--------ACATCGGTCAGGTNCGATGGTCCG-ATGTCTTTCGCATAGACT
Reference ( family-2193 ) : GTCTATGCGAAAGTTT-TTTT-G-G-CCACACAGGACATTCGGTCC-T----GTGTA-----CTCAATGAACAC-ACGGGACCGAACCA-AATTTT-GTC---GGACC-GAA-A-AAC---------CTA--------AT--------GT-AAAA--------A-A---------C---GTGAA-AATGCAG---AACCAA-GGAAATC--T-----TATTT-ATTATAC---T-AATAC----T--ATTGAT---------ATTTT-ATGTTTTCAA-A-----TCCAGGG-AT-CGCTC---------CCGCATA---------ATNCT-----TGAGA-CAGT-CCATG-CGG-TTTT--AATCAC-------ACTCA-TTTA-C---GTACTTG----GATTTT-TGTGCGATAC---------------A-ATTTTT-AA--TA-CTCC-TGNCAAAA-------------CA-G--T--AAAAC---TCAAAACCGGACA--CTGAGACA------TC-GGACATTC-CG-GTCCGGTGTA-AAAAANGA-TGCATCGGAC-CTGAGGC-ACTGTA------T--AC-ATCGG-----TC-AGGTCC------------GATGCATCGGACCTGAGGCACTGT--------ACATCGGTCAGGTCCGATGGTCCG-ATGTCTTTCGCATAGACT
gi|1 : GTCTATGCGAAAGTTTATTTT-G-G-CCCCACAGGACATTCTGTTC-T----GTGTA-----CTCAATGAACAA-ACAGGACCGAACCA-AATTTT-G-----AGACG-AAA-A-AAC---------CTA--------AT--------GT-GAAA--------C-A---------T---GAGAA-AATGCAG---AACCAA-GGAAATC--T-----TATTT-ATTATAC---T-AATAC----T--ATTGAT---------ATCTT-AT-TCTTC---------TCT-GGC-AT-CGCTC---------CCGCATA---------ATACT-----TGAGA-CGGT-CCATG-CGG-TTTT--AATCAC-------ACTCA-TTTA-C---GTACATGTAATGGTACT-TGAGCGATAC---------------ACATTTTTTAA--CAACTCCATGTCAAAA-------------CA-G--T--AAAAC---TCAAAATTGGACA--CTGAGACA------TC-GGACATTC-CA-GTCCGGTGTT-AAAAAGGA-TGCATAAGAC-CTGAGGC-ACTGTACATATGC--AC-ATCGG-----TC-AGG-NG------------GATGCATAAGACTTGAGGCACTGTACATATGCACATCGGTCAGGTCTGATGGTCTGTATGTCTTTCGCATAGACT
gi|10 : TGCAG---AACCAA-GGAAATC--G-----TATTT-ATTATAC---T-AATAC----T--GTTGAT---------ATTTC-ATGTTTTCAACAGACT-TCCAGAG-AT-TGCTC---------CTGAAAA---------ATTGT-----TGAGA-TAGT-CCATG-CAG-TTTT--AATCAC-------ACTAA-TTTA-A---TTACTTA----AA-------------AC---------------A-A------A---------C-TGG--AAA-------------CA-G--------AC--------ATCAGACATTCTG----G------TC-GGA-------G-GTCCTGTGTA-CAAAAGGA-TGCATCGGTC-CTGAGAA-ACTG--------T--AC-ATCGG-----TC-AGGTCT------------GATG
gi|11 : ATGAACAC-ACAGGACAAAACCA-AATT---GTC---AGACT-TAA-A-AAC---------TTAG-------AT--------GT-AAAAGAAGTG--A-A---------CACTGTGAA-AATGCAG---AACCAA-GGAAATC--TTAAAATATTA-ACTATACCTTT-AATTA----T--ATTGATGAAAGTCAAATTTT----TTTTTAA-A-----gtccaatgtctttcgcgtaaact
gi|12 : gtATGAACAC-ACAGGACCAAACCA-AATT---GTC---AGACTTAAA-A-AAC---------TTA--------AT--------GT-AAAA--------A-AGTGAAAACAC---TTGAA-AATGCAG---AACCAA-GGAAATC--T-----TAAAT-ATTA-AC---T-AATACT---T--ATT-AT---------ATTAT--TGAATTCAA-A-----aaacctatcaaacccaataagcgaggaaattgattcagagatgaatcaaacatt
gi|13 : ACAC-ACAGGACCAAACCA-AATT---GTC---AGACT-TAA-A-AAC---------TTA--------AT--------GT-AAAA--------A-AGTGAAACA-C---TTGAA-AATGCAG---AACCAA-GGAAATC--T-----TAAAT-ATTA-AC---T-AATAC----TTAATT-AT---------A-TTG-ATGAATTCAA-A-----attttttttttaaaaaacctatcaaaccaataa
gi|14 : TCAATTAACAC-ACAGGACCAAACCA-AATTCT-GTC---CGACC-G-A-A-AAC---------TTT--------AT--------GT-AAAA--------A-A---------T----TGAA-AATGCAG---AACCAA-GGAAATA--T-----Tatttttttttaaaaacctatcaaaccaataa
gi|15 : GTCTATGCGAAAGTTT-TTTT-G-GGCCATACAGGACATTCAGTCC-T----GTGTA-----CTCAATGAACAC-AC
gi|16 : aGTCTACGTAAAAGTTT-TTTG-G-GGCCACACAGGACATTCGGTCC-A----GTGTG-----CTCAATGAACA
gi|2 : aGTATATGCGAAAGTTT-TTTTTA-G-CCACACAGGACATTCGGTCC-TTAGTATGTA-----CTCAATGAATAC-ACGGGACTGAACCA-AATTTT-GTC---GAACC-AAA-A-AAC---------CTA--------AT--------GT-AAAATAGGTGAAACA---------C---GTGAA-GATGCAG---AACCAA-GGAAATC--G-----TATTT-ATTATAC---T-AATAC----T--ATTGAT---------ATTTC-ATGTTTTCAACAGACT-TTCAGAG-AT-TGCTC---------CTGCAGA---------ATTGTTA---TGAGA-CAGT-CCACG-CGG-TTTT--AATCAC-------ACTGA-TTTA-A---TTACTTA----AA-------------AC---------------A-A-----------A-CTC---------A-------------CA----------AC---TCTAAACCGAAAA--CTGAGACA------TT-GAACATTC-TG-GTCATGTGTA-CAAAAGGA-TGCATCGGAC-CTGAGAC-ACTG--------T--AC-ATCAG-----TC-TGGTCC------------GATGt
gi|3 : GTCTATGTGAAAGTTT-TT---GAG-CCACACGGGACATTTGGTCC-T----ATCTATATTACTCAATGAACAC-ACAGGATTAAATCA-AATTTT-GTC---GGACC-GAC-A-TAC---------CTC--------AT--------GT-AAAA--------A-A----------------------GCAG---AACCAA-GGAAATC-----------TT-ATTATAC---C-AATAC----T--ATTGAT---------ATTTT-ATGTTTTCAA-GACT--TCCAGAG-AT-TGTTC---------CCGCATA---------AAACTTGTAATGAGA-CGGT-ACATG--------T--A--TGT-------GGTCA-TTTA-CA--ATGCTTG----GATTAT-TGTGCAGT-------------------ATTTTT-A--------CC-T---AAAA-------------C---------AAACCT-TCAAAACCGGACAC-CTGAGACA------TCAAGACATTCTTG-GTACTGTGTA-CAAAA-GA-TGCATCGGAC-TTG-----------------T--AC-ATCGG-----TC-AGGTCT------------G-----TCGG-TCTGAtcttttgcataga
gi|4 : a-T----GTGTA-----CTCGATGAACAC-AGGGGACCAAACCA-AATTTT-GTC---AAATC-GGA-A-AAC---------CTA--------TT--------GT-AAAA--------A-A---------A---ATAAATAATGCAG---AACCAA-GGAAATC--T-----TATTT-ATTATTC---T-AATACTATAT--ATTGAT---------ATCTT-AT-TTTTC---------TCT-GGC-AT-CATTC---------CTGCATA---------AT---------------------ATG-CGG-TTTA--AATCAT-------AATCA-TTTA-C---GTATTTG----AA--TT-TGTGCAATATTTTTTACCTAAAACAA-ACTTTT-AAATTA-CTCTGTGTCAAAA-------------TA-G--T--AAAACTTGTCAGAACCAAACA--CTGAGACA------TC-GGACATTT-CA-GTCCATTGTA-AAAAATGA-CACATCGGAC-TTAAGGC-ACTG--------T--AC-ATCAT-----TC-AGGTAC------------AGTGtgtcttttcgcatagact
gi|4 : C-ACTG-A------G--AC-ATCGGACATTTC-AG-TCCATTGTAAAAAATGACACATCGGACTTAAGGCACTGT--------ACATCATTCAGGTACAGTGGCCTG-ATGTCTTTCGCATAGACTgcctgatgtctttcgcatagact
gi|5 : tgtgtactcgatgaacacaggggaccaaaccaaattttgtcaaatcggaaaacctattgtaaaaaaaataaataatgcagaaccaaggaaatcttatttattattctaatactatatattgatatcttatttttctctggcatcattcctgcataatatgcggtttaaatcataatcatttacgtatttgaatttgtgcaatattttttacctaaaacaaacttttaaattactctgtgtcaaaatagtaaaacttgtcagaaccaaaTCAAT-AACACTACGAAAGAGACATA-AATTTC-GTCCGCAGCCC-GAG-A-AATAAGGACATTTTA--------TT--------GTTAAAA--------A-A---------T---TTGAA-AATGCAACTCAACCAA-GGAA---------------------TA----T-AATAC----T--ATTGAT---------ATTT----ATTCTC---------T---GGC-AT-CGCTC---------CCGCATA---------ATACT-----TGAGAACA-T-CCATT-TGG-TTTC--AGTCACGCTCTCAACTCG-TTTA-TTTAGTACCTA----GATTTC-TGTG--ATA-------------------TTTTT-----TG-CTTT-AAACAAAAATTTAAATGAGTCCATG--T--CAAAC---TATAAACCAGACA--CTGAGGCA------TC-GGACATTC-TA-GTCTGGTGTA-AAAAATGT-TGCATCAAAC-CTGAGGC-ACTG--------T--GC-ATCAG-----TC-AGGTCT------------GTTGCAT
gi|6 : atgttaacctGTCTATGCGAAAGTTT-TT--------------GGGT----GGTCCCT----GTGTA-----CTCAATGAACGC-ACCG-ACCGCACCACAATTTTTGTC---GGCCC-GAA-ACAAC---------CTA--------AT--------GT-AAAAGTGA----A-A---------CAG-GCGAA-AATGCAG---AAACAAAGGAAAT-------------T-CTTGTAC---------------------AG---------CTTTT-----TTTCTA--------CCAGGG-AT-CGCTC---------C-GCATA---------ATTCT-----TGAGA-CAGT-CCATG-CGGTTTTT--AATCTA-------ATTCT-TTTA-C---ATACTTT----GCTTTTCTGTGC--T-------------------ATTTTT-GG--T--CT-C-TGTCAAAA-------------TA-GTTT--AAAAC---TC-AAACCGGACA--CTGA-------------AGA-ATTC-CATGTCCGGTGT--AAGTATTA-TGCATCGGAC-CCGAGGCGACGTTA------TCAAC-ATTGG-----TC-AGGTCC------------GATGCagaatgtg
gi|7 : GTCTATGCGAAAGTTT-TT--------------GGGT----GGTCC-T----GTGTA-----CTCAATGAACGC-AACCGACCGACCCA-ATTTTTTGTC---GGACC-GAACA-AGC---------CTA--------AT--------GT-AAAAGTGAA---A-A---------CAG-GCGAA-AATGCAG---AAACAA-AGGAATT--C-----T---------------T-AGTAC-----------AG---------CTTTT----TCTTCTA--------CCAGGG-ATTCGCCT---------CCGCATA---------AT-CT-----TGAGA-CAGT-CCATG-CGG-TTTTT-AATCTA-------ATTCT-TTTAAC---ATACTTG----G-TTTT-TCTGTGCTA-------------------TTTTT-GG--T--CTC--TGTCAAAA-------------TA-G--TTTAAAAC---TCAAA--CGGACA--CTGAGA---------------ATTC-CATGTCCGGTGTA-AGTA-TTA-TGCATCGGAC-CCGAGGC-ACT-TA------TC-ACAATTGG-----TC-AGGTCC------------GATGCttttcacacagacaa
gi|8 : aACCAA-GGAAATCGTT-----TATTTTATTATAC---A-CATAC----T--G-TGAT---------ATTTTCATGTTTTCAACAGGACTTCCAGAGCAT-TGCTCTGAAAAAAACACCATAAACGAAAATATTGT-----TGAGA-TAGTCCCATGCCAG-TCTTTAAATCAC-------ACTAACTTTA-------AC--------ATT------------C---------------A-CTCTTT-AA---A-C------ACAAAA-------------CT-G--G--ATAAC-------AAC---ACT--CCAAGACATTCTGGTC-GGA-------G-GTCCTGTGTACAAAAGGGACTGCATCGGTC-CTGAGAA-ACTGC-------T--AC-ATCGG-----TCAAGGTCT------------GATGtttcacacagaac
gi|9 : gacCAC-ATGGGACCGAACCA-AATTTT-GTC---AGACA-GAA-A-AGC---------CTATAACGTGTATATAAAACAGT-AAAA--------C-A---------C---GTGAA-AATACAG---AACCAA-GGAAATT--T-----TATTC-ATTATAC---TAAATAC----T--GTTGAT---------ATTTT-AT-TCTTCgtccaatgtctctttc
gi|9 : atgcatg-TGACAAAA-------------CA-G--T--AAAAC---TTAAAACAGGACA--CTGAGACA------TC-AAACATTT-TG-GTCTGGTGTA-AAAAAGGA-TGCATCAGAC-CTGAGGC-ACTGTA------T-----ATTGG-----TC-AGGTTC------------GATGtctggcaaacatgacaaaacagtaaaacttaaaacaggacactgagacatcaaacattttggtctggtgtaaaaaaggatgcatcagacctgaggcactgtatattggtcaggttcgatggtccaatgtctttcacatagactg
gi|9 : atgcatgcacatgggaccgaaccaaattttgtcagacagaaaagcctataacgtgtatataaaacagtaaaacacgtgaaaatacagaaccaaggaaattttattcattatactaaatactgttgatattttattcttctctggcaaacaGGACACTGAGAC-ATCAAA------C--AT-TTTGG-----TC-TGGTGTAAAAAAG-----GATGCATCAGACCTGAGGCACTGT--------ATATTGGTCAGGTTCGATGGTCCA-ATGTCTTTCACATAGACTgtccaatgtctttcacatagactg
Alignments
lowQualScore : 111111111111111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 3333333 1111 11111 111111111 11111111 11111111 7777777777777777777777777 11111111111111 1111111 111111111 1111 44444444444 111111111 333333333333333333 1111111 11111 444444444444444444444444444444444444444444444444444444444444444444444444444444444444444 111111 11111111 1111 333333333 222222222222 22222222
lowQualScore : 5 6666666 1 5 5 0000 22222 3 2 3 999 7777 3 3 3 333333333 55555555 22222222 3 0000000000000000000000000 3 555 2 33333333333333 0 66666 0000000 1 222222222 7777 99999999999 4 4 4 777777777 3 333333333333333333 4 4 4 8 66 4444444 4 4 88888 1 666666666666666666666666666666666666666666666666666666666666666666666666666666666666666 888888 99 22222222 7 1111 1 77 5 4 3 3 3 333333333 3 44 88888 3 555555555555 7 8 99999999 8 1 8
lowQualScore : . ....... . . . .... ..... . . . ... .... . . . ......... ........ ........ . ......................... . ... . .............. . ..... ....... . ......... .... ........... . . . ......... . .................. . . . . .. ....... . . ..... . ....................................................................................... ...... .. ........ . .... . .. . . . . . ......... . .. ..... . ............ . . ........ . . .
lowQualScore : 7 1111111 3 0 0 6666 55555 1 2 3 444 2222 3 3 3 333333333 44444444 11111111 3 9999999999999999999999999 3 444 9 88888888888888 4 44444 5555555 5 333333333 9999 33333333333 6 4 4 888888888 7 333333333333333333 4 4 4 9 11 4444444 4 4 88888 0 555555555555555555555555555555555555555555555555555555555555555555555555555555555555555 333333 55 11111111 5 4444 6 44 0 0 6 3 3 333333333 3 66 33333 3 888888888888 8 0 00000000 0 0 0
consensus : GTCTATGCGAAAGTTT-TTTT-G-G-CCACACAGGACATTCGGTCC-T----GTGTA-----CTCAATGAACAC-ACGGGACCGAACCA-AATTTT-GTC---GGACC-GAA-A-AAC---------CTA--------AT--------GT-AAAA--------A-A---------C---GTGAA-AATGCAG---AACCAA-GGAAATC--T-----TATTT-ATTATAC---T-AATAC----T--ATTGAT---------ATTTT-ATGTTTTCAA----A----TCCAGGG-AT-CGCTC---------CCGCATAA---------TNCT-----TGAGA-CAGTCC-ATGC-GG-TTTT--AATCAC-------ACTCA-TTT-AC---GTACTTG----GATTTT-TGTGC---------TAC--------A-ATTTTT-AA--TA-CTCC-TGNCAAAA-------------CA-G--TAAAAC---TCAAAACCGGACA--CTGAGACAT------C-GGACATTC-CG-GTCCGGTGTA-AAAAAGGA-TGCATCGGAC-CTGAGGC-AC-TG---AT----AC-ATC--GG-----TC-AGGTCC------------GATGCATCGGACCTGAGGCACTG-T--------ACATCGGTCA-GGTCCGATGGTCCG-ATGTCTTTCGCATAGACT
Reference ( family-2193 ) : GTCTATGCGAAAGTTT-TTTT-G-G-CCACACAGGACATTCGGTCC-T----GTGTA-----CTCAATGAACAC-ACGGGACCGAACCA-AATTTT-GTC---GGACC-GAA-A-AAC---------CTA--------AT--------GT-AAAA--------A-A---------C---GTGAA-AATGCAG---AACCAA-GGAAATC--T-----TATTT-ATTATAC---T-AATAC----T--ATTGAT---------ATTTT-ATGTTTTCAA----A----TCCAGGG-AT-CGCTC---------CCGCATAA---------TNCT-----TGAGA-CAGTCC-ATGC-GG-TTTT--AATCAC-------ACTCA-TTT-AC---GTACTTG----GATTTT-TGTGC---------TAC--------A-ATTTTT-AA--TA-CTCC-TGNCAAAA-------------CA-G--TAAAAC---TCAAAACCGGACA--CTGAGACAT------C-GGACATTC-CG-GTCCGGTGTA-AAAAAGGA-TGCATCGGAC-CTGAGGC-AC-TG---AT----AC-ATC--GG-----TC-AGGTCC------------GATGCATCGGACCTGAGGCACTG-T--------ACATCGGTCA-GGTNCGATGGTCCG-ATGTCTTTCGCATAGACT
gi|1 : GTCTATGCGAAAGTTTATTTT-G-G-CCCCACAGGACATTCTGTTC-T----GTGTA-----CTCAATGAACAA-ACAGGACCGAACCA-AATTTT-G-----AGACG-AAA-A-AAC---------CTA--------AT--------GT-GAAA--------C-A---------T---GAGAA-AATGCAG---AACCAA-GGAAATC--T-----TATTT-ATTATAC---T-AATAC----T--ATTGAT---------ATCTT-AT-TCTTC-----------TCT-GGC-AT-CGCTC---------CCGCATAA---------TACT-----TGAGA-CGGTCC-ATGC-GG-TTTT--AATCAC-------ACTCA-TTT-AC---GTACATGTAATGGTACT-TGAGCGA-------TAC--------ACATTTTTTAA--CAACTCCATGTCAAAA-------------CA-G--TAAAAC---TCAAAATTGGACA--CTGAGACAT------C-GGACATTC-CA-GTCCGGTGTT-AAAAAGGA-TGCATAAGAC-CTGAGGC-AC-TGTACATATGCAC-ATC--GG-----TC-AGG-NG------------GATGCATAAGACTTGAGGCACTG-TACATATGCACATCGGTCA-GGTCTGATGGTCTGTATGTCTTTCGCATAGACT
gi|10 : TGCAG---AACCAA-GGAAATC--G-----TATTT-ATTATAC---T-AATAC----T--GTTGAT---------ATTTC-ATGTTTTCAAC---AGACTTCCAGAG-AT-TGCTC---------CTGAAAAA---------TTGT-----TGAGA-TAGTCC-ATGC-AG-TTTT--AATCAC-------ACTAA-TTT-AA---TTACTTA----AA--------------------AC--------A-A------A---------C-TGG--AAA-------------CA-G------AC--------ATCAGACATTCTG----GT------C-GGA-------G-GTCCTGTGTA-CAAAAGGA-TGCATCGGTC-CTGAGAA-AC-TG----T----AC-ATC--GG-----TC-AGGTCT------------GATG
gi|10 : ------------GATGCATCGGTCCTGAGAAACTG-T--------ACATCGGTCA-GGTCTGATGGTCCA-ATGTCTTTCGCGTAAACTgtccaatgtctttcgcgtaaact
gi|11 : tgcagaaccaaggaaatcgtatttattatactaatactgttgatatttcatgttttcaacagacttccagagattgctcctgaaaaattgttgagatagtccatgcagttttaatcacactaatttaattacttaaaacaaactggaaacagacatcagacattctggtcggaggtcctgtgtacaaaagATGAACAC-ACAGGACAAAACCA-AATT---GTC---AGACT-TAA-A-AAC---------TTAG-------AT--------GT-AAAAGAAGTG--A-A---------CACTGTGAA-AATGCAG---AACCAA-GGAAATC--TTAAAATATTA-ACTATACCTTT-AATTA----T--ATTGATGAAAGTCAAATTTT----TTTTTAA----A----
gi|12 : gtATGAACAC-ACAGGACCAAACCA-AATT---GTC---AGACTTAAA-A-AAC---------TTA--------AT--------GT-AAAA--------A-AGTGAAAACAC---TTGAA-AATGCAG---AACCAA-GGAAATC--T-----TAAAT-ATTA-AC---T-AATACT---T--ATT-AT---------ATTAT--TGAATTCAA----A----aaacctatcaaacccaataagcgaggaaattgattcagagatgaatcaaacatt
gi|13 : ACAC-ACAGGACCAAACCA-AATT---GTC---AGACT-TAA-A-AAC---------TTA--------AT--------GT-AAAA--------A-AGTGAAACA-C---TTGAA-AATGCAG---AACCAA-GGAAATC--T-----TAAAT-ATTA-AC---T-AATAC----TTAATT-AT---------A-TTG-ATGAATTCAA----A----attttttttttaaaaaacctatcaaaccaataa
gi|14 : TCAATTAACAC-ACAGGACCAAACCA-AATTCT-GTC---CGACC-G-A-A-AAC---------TTT--------AT--------GT-AAAA--------A-A---------T----TGAA-AATGCAG---AACCAA-GGAAATA--T-----Tatttttttttaaaaacctatcaaaccaataa
gi|15 : GTCTATGCGAAAGTTT-TTTT-G-GGCCATACAGGACATTCAGTCC-T----GTGTA-----CTCAATGAACAC-AC
gi|16 : aGTCTACGTAAAAGTTT-TTTG-G-GGCCACACAGGACATTCGGTCC-A----GTGTG-----CTCAATGAACA
gi|2 : aGTATATGCGAAAGTTT-TTTTTA-G-CCACACAGGACATTCGGTCC-TTAGTATGTA-----CTCAATGAATAC-ACGGGACTGAACCA-AATTTT-GTC---GAACC-AAA-A-AAC---------CTA--------AT--------GT-AAAATAGGTGAAACA---------C---GTGAA-GATGCAG---AACCAA-GGAAATC--G-----TATTT-ATTATAC---T-AATAC----T--ATTGAT---------ATTTC-ATGTTTTCAAC---AGACTTTCAGAG-AT-TGCTC---------CTGCAGAA---------TTGTTA---TGAGA-CAGTCC-ACGC-GG-TTTT--AATCAC-------ACTGA-TTT-AA---TTACTTA----AA--------------------AC--------A-A-----------A-CTC---------A-------------C--------AAC---TCTAAACCGAAAA--CTGAGACAT------T-GAACATTC-TG-GTCATGTGTA-CAAAAGGA-TGCATCGGAC-CTGAGAC-AC-TG----T----AC-ATC--AG-----TC-TGGTCC------------GATGt
gi|3 : GTCTATGTGAAAGTTT-TT---GAG-CCACACGGGACATTTGGTCC-T----ATCTATATTACTCAATGAACAC-ACAGGATTAAATCA-AATTTT-GTC---GGACC-GAC-A-TAC---------CTC--------AT--------GT-AAAA--------A-A----------------------GCAG---AACCAA-GGAAATC-----------TT-ATTATAC---C-AATAC----T--ATTGAT---------ATTTT-ATGTTTTCAA----GACT-TCCAGAG-AT-TGTTC---------CCGCATAA---------AACTTGTAATGAGA-CGGTAC-ATG--------T--A--TGT-------GGTCA-TTT-ACA--ATGCTTG----GATTAT-TGTGC----------AG--------T-ATTTTT-A--------CC-T---AAAA-------------C-------AAACCT-TCAAAACCGGACAC-CTGAGACAT------CAAGACATTCTTG-GTACTGTGTA-CAAAA-GA-TGCATCGGAC-TTG--------------T----AC-ATC--GG-----TC-AGGTCT------------G-----TCGG-TCTGAtcttttgcataga
gi|4 : a-T----GTGTA-----CTCGATGAACAC-AGGGGACCAAACCA-AATTTT-GTC---AAATC-GGA-A-AAC---------CTA--------TT--------GT-AAAA--------A-A---------A---ATAAATAATGCAG---AACCAA-GGAAATC--T-----TATTT-ATTATTC---T-AATACTATAT--ATTGAT---------ATCTT-AT-TTTTC-----------TCT-GGC-AT-CATTC---------CTGCATAA---------T---------------------ATGC-GG-TTTA--AATCAT-------AATCA-TTT-AC---GTATTTG----AA--TT-TGTGCAATATTTTTTACCTAAAACAA-ACTTTT-AAATTA-CTCTGTGTCAAAA-------------TA-G--TAAAACTTGTCAGAACCAAACA--CTGAGACAT------C-GGACATTT-CA-GTCCATTGTA-AAAAATGA-CACATCGGAC-TTAAGGC-AC-TG----T----AC-ATC--AT-----TC-AGGTAC------------AGTGtgtcttttcgcatagact
gi|4 : C-AC-TG---AG----AC-ATC--GGACATTTC-AG-TCCATTGTAAAAAATGACACATCGGACTTAAGGCACTG-T--------ACATCATTCA-GGTACAGTGGCCTG-ATGTCTTTCGCATAGACTgcctgatgtctttcgcatagact
gi|5 : tgtgtactcgatgaacacaggggaccaaaccaaattttgtcaaatcggaaaacctattgtaaaaaaaataaataatgcagaaccaaggaaatcttatttattattctaatactatatattgatatcttatttttctctggcatcattcctgcataatatgcggtttaaatcataatcatttacgtatttgaatttgtgcaatattttttacctaaaacaaacttttaaattactctgtgtcaaaatagtaaaacttgtcagaaccaaaTCAAT-AACACTACGAAAGAGACATA-AATTTC-GTCCGCAGCCC-GAG-A-AATAAGGACATTTTA--------TT--------GTTAAAA--------A-A---------T---TTGAA-AATGCAACTCAACCAA-GGAA---------------------TA----T-AATAC----T--ATTGAT---------ATTT----ATTCTC-----------T---GGC-AT-CGCTC---------CCGCATAA---------TACT-----TGAGAACA-TCC-ATTT-GG-TTTC--AGTCACGCTCTCAACTCG-TTT-ATTTAGTACCTA----GATTTC-TGTGA---------TA------------TTTTT-----TG-CTTT-AAACAAAAATTTAAATGAGTCCATG--TCAAAC---TATAAACCAGACA--CTGAGGCAT------C-GGACATTC-TA-GTCTGGTGTA-AAAAATGT-TGCATCAAAC-CTGAGGC-AC-TG----T----GC-ATC--AG-----TC-AGGTCT------------GTTGCAT
gi|6 : atgttaacctGTCTATGCGAAAGTTT-TT--------------GGGT----GGTCCCT----GTGTA-----CTCAATGAACGC-ACCG-ACCGCACCACAATTTTTGTC---GGCCC-GAA-ACAAC---------CTA--------AT--------GT-AAAAGTGA----A-A---------CAG-GCGAA-AATGCAG---AAACAAAGGAAAT-------------T-CTTGTAC---------------------AG---------CTTTT-----TTTCTA----------CCAGGG-AT-CGCTC---------C-GCATAA---------TTCT-----TGAGA-CAGTCC-ATGC-GGTTTTT--AATCTA-------ATTCT-TTT-AC---ATACTTT----GCTTTTCTGTGC---------T------------ATTTTT-GG--T--CT-C-TGTCAAAA-------------TA-GTTTAAAAC---TC-AAACCGGACA--CTGA-------------AGA-ATTC-CATGTCCGGTGT--AAGTATTA-TGCATCGGAC-CCGAGGCGACGTT---ATCA--AC-ATT--GG-----TC-AGGTCC------------GATGCagaatgtg
gi|7 : GTCTATGCGAAAGTTT-TT--------------GGGT----GGTCC-T----GTGTA-----CTCAATGAACGC-AACCGACCGACCCA-ATTTTTTGTC---GGACC-GAACA-AGC---------CTA--------AT--------GT-AAAAGTGAA---A-A---------CAG-GCGAA-AATGCAG---AAACAA-AGGAATT--C-----T---------------T-AGTAC-----------AG---------CTTTT----TCTTCTA----------CCAGGG-ATTCGCCT---------CCGCATAA---------T-CT-----TGAGA-CAGTCC-ATGC-GGTTTTT--AATCTA-------ATTCT-TTTAAC---ATACTTG----GTTTTTCTGTGC---------T------------ATTTTT-GG--T--CT-C-TGTCAAAA-------------TA-GTTTAAAAC---TCAAA--CGGACA--CTGAGA---------------ATTC-CATGTCCGGTGT--AAGTATTA-TGCATCGGAC-CCGAGGC-AC-TT---ATC---ACAATT--GG-----TC-AGGTCC------------GATGCttttcacacagacaa
gi|8 : aACCAA-GGAAATCGTT-----TATTTTATTATAC---A-CATAC----T--GT-GAT---------ATTTTCATGTTTTCAACAGGACT--TCCAGAGCAT-TGCTCTGAAAAAAACACCATAAACGAAAATATTGT-----TGAGA-TAGTCCCATGCCAG-TCTTTAAATCAC-------ACTAACTTT-A------AC--------ATT-------------------C--------A-CTCTTT-AA---A-C------ACAAAA-------------CT-G--GATAAC-------AAC---ACT--CCAAGACATTCTGGTC-GGA-------G-GTCCTGTGTACAAAAGGGACTGCATCGGTC-CTGAGAA-AC-TG---CT----AC-ATC--GG-----TCAAGGTCT------------GATGtttcacacagaac
gi|8 : gacTGCATCGGTCCTGAGAAACTGCT--------ACATCGGTCAAGGTCTGATGGTCCA-ATGTCTCTgtccaatgtctctttc
gi|9 : gacaccaaggaaatcgtttattttattatacacatactgtgatattttcatgttttcaacaggacttccagagcattgctctgaaaaaaacaccataaacgaaaatattgttgagatagtcccatgccagtctttaaatcacactaactttaacattcactctttaaacacaaaactggataacaacactccaagacattctggtcggaggtcctgtgtacaaaagggacCAC-ATGGGACCGAACCA-AATTTT-GTC---AGACA-GAA-A-AGC---------CTATAACGTGTATATAAAACAGT-AAAA--------C-A---------C---GTGAA-AATACAG---AACCAA-GGAAATT--T-----TATTC-ATTATAC---TAAATAC----T--GTTGAT---------ATTTT-AT-TCTTCttc
gi|9 : atgcatg-TGACAAAA-------------CA-G--TAAAAC---TTAAAACAGGACA--CTGAGACAT------C-AAACATTT-TG-GTCTGGTGTA-AAAAAGGA-TGCATCAGAC-CTGAGGC-AC-TG----T----AT-ATT--GG-----TC-AGGTTC------------GATGtctggcaaacatgacaaaacagtaaaacttaaaacaggacactgagacatcaaacattttggtctggtgtaaaaaaggatgcatcagacctgaggcactgtatattggtcaggttcgatggtccaatgtctttcacatagactg
gi|9 : atgcatgcacatgggaccgaaccaaattttgtcagacagaaaagcctataacgtgtatataaaacagtaaaacacgtgaaaatacagaaccaaggaaattttattcattatactaaatactgttgatattttattcttctctggcaaacaGGACACTGAGAC-AT-CA---A-----AC-ATTTTGG-----TC-TGGTGTAAAAAAG-----GATGCATCAGACCTGAGGCACTG-T--------ATATTGGTCA-GGTTCGATGGTCCA-ATGTCTTTCACATAGACTgtccaatgtctttcacatagactg
Alignments
lowQualScore : 111111111111111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 3333333 1111 11111 111111111 11111111 11111111 7777777777777777777777777 11111111111111 1111111 111111111 1111 44444444444 111111111 333333333333333333 1111111 11111 444444444444444444444444444444444444444444444444444444444444444444444444444444444444444 111111 11111111 1111 333333333 222222222222 22222222
lowQualScore : 5 6666666 1 5 5 0000 22222 3 2 3 999 7777 3 3 3 333333333 55555555 22222222 3 0000000000000000000000000 3 555 2 33333333333333 0 66666 0000000 1 222222222 7777 99999999999 4 4 4 777777777 3 333333333333333333 4 4 4 8 66 4444444 4 4 88888 1 666666666666666666666666666666666666666666666666666666666666666666666666666666666666666 888888 99 22222222 7 1111 1 77 5 4 3 3 3 333333333 3 44 88888 3 555555555555 7 8 99999999 8 8
lowQualScore : . ....... . . . .... ..... . . . ... .... . . . ......... ........ ........ . ......................... . ... . .............. . ..... ....... . ......... .... ........... . . . ......... . .................. . . . . .. ....... . . ..... . ....................................................................................... ...... .. ........ . .... . .. . . . . . ......... . .. ..... . ............ . . ........ . .
lowQualScore : 7 1111111 3 0 0 6666 55555 1 2 3 444 2222 3 3 3 333333333 44444444 11111111 3 9999999999999999999999999 3 444 9 88888888888888 4 44444 5555555 5 333333333 9999 33333333333 6 4 4 888888888 7 333333333333333333 4 4 4 9 11 4444444 4 4 88888 0 555555555555555555555555555555555555555555555555555555555555555555555555555555555555555 333333 55 11111111 5 4444 6 44 0 0 6 3 3 333333333 3 66 33333 3 888888888888 8 0 00000000 0 0
consensus : GTCTATGCGAAAGTTT-TTTT-G-G-CCACACAGGACATTCGGTCC-T----GTGTA-----CTCAATGAACAC-ACGGGACCGAACCA-AATTTT-GTC---GGACC-GAA-A-AAC---------CTA--------AT--------GT-AAAA--------A-A---------C---GTGAA-AATGCAG---AACCAA-GGAAATC--T-----TATTT-ATTATAC---T-AATAC----T--ATTGAT---------ATTTT-ATGTTTTCAA----A----TCCAGGG-AT-CGCTC---------CCGCATAA---------TNCT-----TGAGA-CAGTCC-ATGC-GG-TTTT--AATCAC-------ACTCA-TTT-AC---GTACTTG----GATTTT-TGTGC---------TAC--------A-ATTTTT-AA--TA-CTCC-TGNCAAAA-------------CA-G--TAAAAC---TCAAAACCGGACA--CTGAGACAT------C-GGACATTC-CG-GTCCGGTGTA-AAAAAGGA-TGCATCGGAC-CTGAGGC-AC-TG---AT----AC-ATC--GG-----TC-AGGTCC------------GATGCATCGGACCTGAGGCACTG-T--------ACATCGGTCA-GGTCCGATGGTCCG-ATGTCTTTCGCATAGACT
Reference ( family-2193 ) : GTCTATGCGAAAGTTT-TTTT-G-G-CCACACAGGACATTCGGTCC-T----GTGTA-----CTCAATGAACAC-ACGGGACCGAACCA-AATTTT-GTC---GGACC-GAA-A-AAC---------CTA--------AT--------GT-AAAA--------A-A---------C---GTGAA-AATGCAG---AACCAA-GGAAATC--T-----TATTT-ATTATAC---T-AATAC----T--ATTGAT---------ATTTT-ATGTTTTCAA----A----TCCAGGG-AT-CGCTC---------CCGCATAA---------TNCT-----TGAGA-CAGTCC-ATGC-GG-TTTT--AATCAC-------ACTCA-TTT-AC---GTACTTG----GATTTT-TGTGC---------TAC--------A-ATTTTT-AA--TA-CTCC-TGNCAAAA-------------CA-G--TAAAAC---TCAAAACCGGACA--CTGAGACAT------C-GGACATTC-CG-GTCCGGTGTA-AAAAAGGA-TGCATCGGAC-CTGAGGC-AC-TG---AT----AC-ATC--GG-----TC-AGGTCC------------GATGCATCGGACCTGAGGCACTG-T--------ACATCGGTCA-GGTCCGATGGTCCG-ATGTCTTTCGCATAGACT
gi|1 : GTCTATGCGAAAGTTTATTTT-G-G-CCCCACAGGACATTCTGTTC-T----GTGTA-----CTCAATGAACAA-ACAGGACCGAACCA-AATTTT-G-----AGACG-AAA-A-AAC---------CTA--------AT--------GT-GAAA--------C-A---------T---GAGAA-AATGCAG---AACCAA-GGAAATC--T-----TATTT-ATTATAC---T-AATAC----T--ATTGAT---------ATCTT-AT-TCTTC-----------TCT-GGC-AT-CGCTC---------CCGCATAA---------TACT-----TGAGA-CGGTCC-ATGC-GG-TTTT--AATCAC-------ACTCA-TTT-AC---GTACATGTAATGGTACT-TGAGCGA-------TAC--------ACATTTTTTAA--CAACTCCATGTCAAAA-------------CA-G--TAAAAC---TCAAAATTGGACA--CTGAGACAT------C-GGACATTC-CA-GTCCGGTGTT-AAAAAGGA-TGCATAAGAC-CTGAGGC-AC-TGTACATATGCAC-ATC--GG-----TC-AGG-NG------------GATGCATAAGACTTGAGGCACTG-TACATATGCACATCGGTCA-GGTCTGATGGTCTGTATGTCTTTCGCATAGACT
gi|10 : TGCAG---AACCAA-GGAAATC--G-----TATTT-ATTATAC---T-AATAC----T--GTTGAT---------ATTTC-ATGTTTTCAAC---AGACTTCCAGAG-AT-TGCTC---------CTGAAAAA---------TTGT-----TGAGA-TAGTCC-ATGC-AG-TTTT--AATCAC-------ACTAA-TTT-AA---TTACTTA----AA--------------------AC--------A-A------A---------C-TGG--AAA-------------CA-G------AC--------ATCAGACATTCTG----GT------C-GGA-------G-GTCCTGTGTA-CAAAAGGA-TGCATCGGTC-CTGAGAA-AC-TG----T----AC-ATC--GG-----TC-AGGTCT------------GATG
gi|10 : ------------GATGCATCGGTCCTGAGAAACTG-T--------ACATCGGTCA-GGTCTGATGGTCCA-ATGTCTTTCGCGTAAACTgtccaatgtctttcgcgtaaact
gi|11 : tgcagaaccaaggaaatcgtatttattatactaatactgttgatatttcatgttttcaacagacttccagagattgctcctgaaaaattgttgagatagtccatgcagttttaatcacactaatttaattacttaaaacaaactggaaacagacatcagacattctggtcggaggtcctgtgtacaaaagATGAACAC-ACAGGACAAAACCA-AATT---GTC---AGACT-TAA-A-AAC---------TTAG-------AT--------GT-AAAAGAAGTG--A-A---------CACTGTGAA-AATGCAG---AACCAA-GGAAATC--TTAAAATATTA-ACTATACCTTT-AATTA----T--ATTGATGAAAGTCAAATTTT----TTTTTAA----A----
gi|12 : gtATGAACAC-ACAGGACCAAACCA-AATT---GTC---AGACTTAAA-A-AAC---------TTA--------AT--------GT-AAAA--------A-AGTGAAAACAC---TTGAA-AATGCAG---AACCAA-GGAAATC--T-----TAAAT-ATTA-AC---T-AATACT---T--ATT-AT---------ATTAT--TGAATTCAA----A----aaacctatcaaacccaataagcgaggaaattgattcagagatgaatcaaacatt
gi|13 : ACAC-ACAGGACCAAACCA-AATT---GTC---AGACT-TAA-A-AAC---------TTA--------AT--------GT-AAAA--------A-AGTGAAACA-C---TTGAA-AATGCAG---AACCAA-GGAAATC--T-----TAAAT-ATTA-AC---T-AATAC----TTAATT-AT---------A-TTG-ATGAATTCAA----A----attttttttttaaaaaacctatcaaaccaataa
gi|14 : TCAATTAACAC-ACAGGACCAAACCA-AATTCT-GTC---CGACC-G-A-A-AAC---------TTT--------AT--------GT-AAAA--------A-A---------T----TGAA-AATGCAG---AACCAA-GGAAATA--T-----Tatttttttttaaaaacctatcaaaccaataa
gi|15 : GTCTATGCGAAAGTTT-TTTT-G-GGCCATACAGGACATTCAGTCC-T----GTGTA-----CTCAATGAACAC-AC
gi|16 : aGTCTACGTAAAAGTTT-TTTG-G-GGCCACACAGGACATTCGGTCC-A----GTGTG-----CTCAATGAACA
gi|2 : aGTATATGCGAAAGTTT-TTTTTA-G-CCACACAGGACATTCGGTCC-TTAGTATGTA-----CTCAATGAATAC-ACGGGACTGAACCA-AATTTT-GTC---GAACC-AAA-A-AAC---------CTA--------AT--------GT-AAAATAGGTGAAACA---------C---GTGAA-GATGCAG---AACCAA-GGAAATC--G-----TATTT-ATTATAC---T-AATAC----T--ATTGAT---------ATTTC-ATGTTTTCAAC---AGACTTTCAGAG-AT-TGCTC---------CTGCAGAA---------TTGTTA---TGAGA-CAGTCC-ACGC-GG-TTTT--AATCAC-------ACTGA-TTT-AA---TTACTTA----AA--------------------AC--------A-A-----------A-CTC---------A-------------C--------AAC---TCTAAACCGAAAA--CTGAGACAT------T-GAACATTC-TG-GTCATGTGTA-CAAAAGGA-TGCATCGGAC-CTGAGAC-AC-TG----T----AC-ATC--AG-----TC-TGGTCC------------GATGt
gi|3 : GTCTATGTGAAAGTTT-TT---GAG-CCACACGGGACATTTGGTCC-T----ATCTATATTACTCAATGAACAC-ACAGGATTAAATCA-AATTTT-GTC---GGACC-GAC-A-TAC---------CTC--------AT--------GT-AAAA--------A-A----------------------GCAG---AACCAA-GGAAATC-----------TT-ATTATAC---C-AATAC----T--ATTGAT---------ATTTT-ATGTTTTCAA----GACT-TCCAGAG-AT-TGTTC---------CCGCATAA---------AACTTGTAATGAGA-CGGTAC-ATG--------T--A--TGT-------GGTCA-TTT-ACA--ATGCTTG----GATTAT-TGTGC----------AG--------T-ATTTTT-A--------CC-T---AAAA-------------C-------AAACCT-TCAAAACCGGACAC-CTGAGACAT------CAAGACATTCTTG-GTACTGTGTA-CAAAA-GA-TGCATCGGAC-TTG--------------T----AC-ATC--GG-----TC-AGGTCT------------G-----TCGG-TCTGAtcttttgcataga
gi|4 : a-T----GTGTA-----CTCGATGAACAC-AGGGGACCAAACCA-AATTTT-GTC---AAATC-GGA-A-AAC---------CTA--------TT--------GT-AAAA--------A-A---------A---ATAAATAATGCAG---AACCAA-GGAAATC--T-----TATTT-ATTATTC---T-AATACTATAT--ATTGAT---------ATCTT-AT-TTTTC-----------TCT-GGC-AT-CATTC---------CTGCATAA---------T---------------------ATGC-GG-TTTA--AATCAT-------AATCA-TTT-AC---GTATTTG----AA--TT-TGTGCAATATTTTTTACCTAAAACAA-ACTTTT-AAATTA-CTCTGTGTCAAAA-------------TA-G--TAAAACTTGTCAGAACCAAACA--CTGAGACAT------C-GGACATTT-CA-GTCCATTGTA-AAAAATGA-CACATCGGAC-TTAAGGC-AC-TG----T----AC-ATC--AT-----TC-AGGTAC------------AGTGtgtcttttcgcatagact
gi|4 : C-AC-TG---AG----AC-ATC--GGACATTTC-AG-TCCATTGTAAAAAATGACACATCGGACTTAAGGCACTG-T--------ACATCATTCA-GGTACAGTGGCCTG-ATGTCTTTCGCATAGACTgcctgatgtctttcgcatagact
gi|5 : tgtgtactcgatgaacacaggggaccaaaccaaattttgtcaaatcggaaaacctattgtaaaaaaaataaataatgcagaaccaaggaaatcttatttattattctaatactatatattgatatcttatttttctctggcatcattcctgcataatatgcggtttaaatcataatcatttacgtatttgaatttgtgcaatattttttacctaaaacaaacttttaaattactctgtgtcaaaatagtaaaacttgtcagaaccaaaTCAAT-AACACTACGAAAGAGACATA-AATTTC-GTCCGCAGCCC-GAG-A-AATAAGGACATTTTA--------TT--------GTTAAAA--------A-A---------T---TTGAA-AATGCAACTCAACCAA-GGAA---------------------TA----T-AATAC----T--ATTGAT---------ATTT----ATTCTC-----------T---GGC-AT-CGCTC---------CCGCATAA---------TACT-----TGAGAACA-TCC-ATTT-GG-TTTC--AGTCACGCTCTCAACTCG-TTT-ATTTAGTACCTA----GATTTC-TGTGA---------TA------------TTTTT-----TG-CTTT-AAACAAAAATTTAAATGAGTCCATG--TCAAAC---TATAAACCAGACA--CTGAGGCAT------C-GGACATTC-TA-GTCTGGTGTA-AAAAATGT-TGCATCAAAC-CTGAGGC-AC-TG----T----GC-ATC--AG-----TC-AGGTCT------------GTTGCAT
gi|6 : atgttaacctGTCTATGCGAAAGTTT-TT--------------GGGT----GGTCCCT----GTGTA-----CTCAATGAACGC-ACCG-ACCGCACCACAATTTTTGTC---GGCCC-GAA-ACAAC---------CTA--------AT--------GT-AAAAGTGA----A-A---------CAG-GCGAA-AATGCAG---AAACAAAGGAAAT-------------T-CTTGTAC---------------------AG---------CTTTT-----TTTCTA----------CCAGGG-AT-CGCTC---------C-GCATAA---------TTCT-----TGAGA-CAGTCC-ATGC-GGTTTTT--AATCTA-------ATTCT-TTT-AC---ATACTTT----GCTTTTCTGTGC---------T------------ATTTTT-GG--T--CT-C-TGTCAAAA-------------TA-GTTTAAAAC---TC-AAACCGGACA--CTGA-------------AGA-ATTC-CATGTCCGGTGT--AAGTATTA-TGCATCGGAC-CCGAGGCGACGTT---ATCA--AC-ATT--GG-----TC-AGGTCC------------GATGCagaatgtg
gi|7 : GTCTATGCGAAAGTTT-TT--------------GGGT----GGTCC-T----GTGTA-----CTCAATGAACGC-AACCGACCGACCCA-ATTTTTTGTC---GGACC-GAACA-AGC---------CTA--------AT--------GT-AAAAGTGAA---A-A---------CAG-GCGAA-AATGCAG---AAACAA-AGGAATT--C-----T---------------T-AGTAC-----------AG---------CTTTT----TCTTCTA----------CCAGGG-ATTCGCCT---------CCGCATAA---------T-CT-----TGAGA-CAGTCC-ATGC-GGTTTTT--AATCTA-------ATTCT-TTTAAC---ATACTTG----GTTTTTCTGTGC---------T------------ATTTTT-GG--T--CT-C-TGTCAAAA-------------TA-GTTTAAAAC---TCAAA--CGGACA--CTGAGA---------------ATTC-CATGTCCGGTGT--AAGTATTA-TGCATCGGAC-CCGAGGC-AC-TT---ATC---ACAATT--GG-----TC-AGGTCC------------GATGCttttcacacagacaa
gi|8 : aACCAA-GGAAATCGTT-----TATTTTATTATAC---A-CATAC----T--GT-GAT---------ATTTTCATGTTTTCAACAGGACT--TCCAGAGCAT-TGCTCTGAAAAAAACACCATAAACGAAAATATTGT-----TGAGA-TAGTCCCATGCCAG-TCTTTAAATCAC-------ACTAACTTT-A------AC--------ATT-------------------C--------A-CTCTTT-AA---A-C------ACAAAA-------------CT-G--GATAAC-------AAC---ACT--CCAAGACATTCTGGTC-GGA-------G-GTCCTGTGTACAAAAGGGACTGCATCGGTC-CTGAGAA-AC-TG---CT----AC-ATC--GG-----TCAAGGTCT------------GATGtttcacacagaac
gi|8 : gacTGCATCGGTCCTGAGAAACTGCT--------ACATCGGTCAAGGTCTGATGGTCCA-ATGTCTCTgtccaatgtctctttc
gi|9 : gacaccaaggaaatcgtttattttattatacacatactgtgatattttcatgttttcaacaggacttccagagcattgctctgaaaaaaacaccataaacgaaaatattgttgagatagtcccatgccagtctttaaatcacactaactttaacattcactctttaaacacaaaactggataacaacactccaagacattctggtcggaggtcctgtgtacaaaagggacCAC-ATGGGACCGAACCA-AATTTT-GTC---AGACA-GAA-A-AGC---------CTATAACGTGTATATAAAACAGT-AAAA--------C-A---------C---GTGAA-AATACAG---AACCAA-GGAAATT--T-----TATTC-ATTATAC---TAAATAC----T--GTTGAT---------ATTTT-AT-TCTTCttc
gi|9 : atgcatg-TGACAAAA-------------CA-G--TAAAAC---TTAAAACAGGACA--CTGAGACAT------C-AAACATTT-TG-GTCTGGTGTA-AAAAAGGA-TGCATCAGAC-CTGAGGC-AC-TG----T----AT-ATT--GG-----TC-AGGTTC------------GATGtctggcaaacatgacaaaacagtaaaacttaaaacaggacactgagacatcaaacattttggtctggtgtaaaaaaggatgcatcagacctgaggcactgtatattggtcaggttcgatggtccaatgtctttcacatagactg
gi|9 : atgcatgcacatgggaccgaaccaaattttgtcagacagaaaagcctataacgtgtatataaaacagtaaaacacgtgaaaatacagaaccaaggaaattttattcattatactaaatactgttgatattttattcttctctggcaaacaGGACACTGAGAC-AT-CA---A-----AC-ATTTTGG-----TC-TGGTGTAAAAAAG-----GATGCATCAGACCTGAGGCACTG-T--------ATATTGGTCA-GGTTCGATGGTCCA-ATGTCTTTCACATAGACTgtccaatgtctttcacatagactg
blockSeqs : . TTGGG A A C TAGT TATTA T A C TTT CGCA T C C AAGGACATT TAACGTGT ATAAAACA T GAAGTGAACACTG T CTC A TTAAAATATTA CTTT TATAT G GAAAGTCAA CATG AACAGGACT A C T TGAAAAAAA T ACGAAAATATTGT A C C T TA GCTCTCA C A TTTAG T GAATTTGTGCAATATTTTTTACCTAAAACAAACTTTTAAATTACTCTGTGTCAAAATAGTA TTGTCA TT TCTGGTC C TTG T AC G C A G G ATCA A TT ACATT A ATTGTAAAAAAT T C . A .
blockSeqs : . TGGGG A A . . . . A . TTT A . . . . G . . AAGTGAAAACACT . . . GTTTATTTT TA TTA G . ATG AACAGACT A . . . T AACTTGTAA . . . T . . . . CAA T AGATTTCTGTGATATTTTTTGCTTTAAACAAAAATTTAAATGAGTCCATGTC CTTCA C CA C CAT T A G . . . . ATC . . . . AAAAAAG A . . . .
blockSeqs : . TTTAG A A . . . . A . CT A . . . . . . . TAGGTGAAACACG . . . GTATTT T TT G . ATG AACAGACT A . . . C TTGTTA . . . . . . . . AT T TGCTTTTCTGTGCTATTTTTGGTCTCTGTCAAAATAGTTTA TCT . C C CAT T A T . . . . AG . . . . . T . . . .
blockSeqs : . GAG A A . . . . A . TT A . . . . . . . AAGTGAAACACT . . . TTAAAT T T G . ATG AAGACT A . . . T TTGT . . . . . . . . AT T GGTTTTTCTGTGCTATTTTTGGTCTCTGTCAAAATAGTTTA TAT . T C TG A A T . . . . CT . . . . . A . . . .
blockSeqs : . . . . . . . . G . TT C . . . . . . . GTGAAAACAGG . . . TTAAAT T T G . ATG AAA A . . . C TACT . . . . . . . . CG C GGATTATTGTGCAGTATTTTTACCTAAAAC TCA . C C CA G A T . . . . T . . . . . .
blockSeqs : . . . . . . . . A . TT G . . . . . . . GTGAAACAGG . . . GTATTT T T G . TG AAA A . . . C TTCT . . . . . . . . CA T ATTCACTCTTTAAACACAAAACTGGA TTA . C . TA G A T . . . . T . . . . .
blockSeqs : . . . . G . TC G . . . . . . . AAAA . . . TTATTT C T G . AT AAA . . . . A TCT . . . . . . . . CA T AAAACAAACTGGAAACAG TC . C . TG G A G . . . . T . . . . .
blockSeqs : . G . TT A . . . . . . . AATT . . . TTATTC T T G . AT TA . . . . . T . . . . . . . . . . AAAACAAACTCAC . . . . G T . G . . . . T . . . . .
blockSeqs : . C . . G . . . . . . . CACG . . . TT T T . . A TA . . . . G G . . . . . . T . . . . .
blockSeqs : . C . . G . . . . . . . AAT . . . CT T T . . . . . . . T . . . . .
blockSeqs : . G . . A . . . . . . . AA . . . T A . . . . . . . A . . . . .
blockSeqs : . . . . . . . . . .
blockSeqs : .
blockSeqCons : TGAG*** AAGTGAAACACG************* ATG* AAG******** T******** ********
originalCons : GTCTATGCGAAAGTTT-TTTT-G-G-CCACACAGGACATTCGGTCC-T----GTGTA-----CTCAATGAACAC-ACGGGACCGAACCA-AATTTT-GTC---GGACC-GAA-A-AAC---------CTA--------AT--------GT-AAAA--------A-A---------C---GTGAA-AATGCAG---AACCAA-GGAAATC--T-----TATTT-ATTATAC---T-AATAC----T--ATTGAT---------ATTTT-ATGTTTTCAA----A----TCCAGGG-AT-CGCTC---------CCGCATAA---------TNCT-----TGAGA-CAGTCC-ATGC-GG-TTTT--AATCAC-------ACTCA-TTT-AC---GTACTTG----GATTTT-TGTGC---------TAC--------A-ATTTTT-AA--TA-CTCC-TGNCAAAA-------------CA-G--TAAAAC---TCAAAACCGGACA--CTGAGACAT------C-GGACATTC-CG-GTCCGGTGTA-AAAAAGGA-TGCATCGGAC-CTGAGGC-AC-TG---AT----AC-ATC--GG-----TC-AGGTCC------------GATGCATCGGACCTGAGGCACTG-T--------ACATCGGTCA-GGTCCGATGGTCCG-ATGTCTTTCGCATAGACT
finalCons : GTCTATGCGAAAGTTT-TTTGAG---CCACACAGGACATTCGGTCC-T----GTGTA-----CTCAATGAACAC-ACGGGACCGAACCA-AATTTT-GTC---GGACC-GAA-A-AAC---------CTA--------AT--------GT-AAAAAAGTGAAACACG-------------TGAA-AATGCAG---AACCAA-GGAAATC--T-----TATTT-ATTATAC---T-AATAC----T--ATTGAT---------ATTTTATG-TTTTCAAG--------TCCAGGG-AT-CGCTC---------CCGCATAA---------TNCT-----TGAGA-CAGTCC-ATGC-GG-TTTT--AATCAC-------ACTCA-TTT-AC---GTACTTG----GATTTT-TGTGC---------TAC--------A-ATTTTT-AA--TA-CTCC-TGNCAAAA-------------CA-G--TAAAAC---TCAAAACCGGACA--CTGAGACAT------C-GGACATTC-CG-GTCCGGTGTA-AAAAAGGA-TGCATCGGAC-CTGAGGC-AC-TGT--------AC-ATC--GG-----TC-AGGTCC------------GATGCATCGGACCTGAGGCACTG-T--------ACATCGGTCA-GGTCCGATGGTCCG-ATGTCTTTCGCATAGACT
Alignments
lowQualScore : 11111111111111111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 3333333 1111 11111 111111111 11111111 222222222222222 11111111 1111111 1111 77777777777 111111111 333333333333333333 11 1111111 222222 44444444444444444444444444444444444444444444444444444444444444444444444444444444444444444 111111 11111111 1111 22222222 222222222222 33333333 1 1
lowQualScore : 77 6666666 1 5 5 0000 22222 3 2 3 999 7777 3 3 3 333333333 55555555 3 666666666666666 3 555 2 00000000 5555 0 66666 0000000 1 7777 22222222222 4 4 4 777777777 3 333333333333333333 4 4 4 4 00 4444444 4 333333 1 66666666666666666666666666666666666666666666666666666666666666666666666666666666666666666 888888 99 22222222 7 1111 1 4 5 4 3 3 00000000 7777 44 3 555555555555 0 0 66666666 0 1 2 0 0
lowQualScore : .. ....... . . . .... ..... . . . ... .... . . . ......... ........ . ............... . ... . ........ .... . ..... ....... . .... ........... . . . ......... . .................. . . . . .. ....... . ...... . ......................................................................................... ...... .. ........ . .... . . . . . . ........ .... .. . ............ . . ........ . . . . .
lowQualScore : 99 1111111 3 0 0 6666 55555 1 2 3 444 2222 3 3 3 333333333 44444444 3 333333333333333 3 444 9 00000000 8888 4 44444 5555555 5 0000 77777777777 6 4 4 888888888 7 333333333333333333 4 4 4 4 66 4444444 4 222222 0 55555555555555555555555555555555555555555555555555555555555555555555555555555555555555555 333333 55 11111111 5 4444 6 0 0 0 3 3 44444444 1111 66 3 888888888888 8 8 22222222 2 2 0 0 0
consensus : GTCTATGCGAAAGTTT--TTT-G-GG-CCACACAGGACATTCGGTCC-T----GTGTA-----CTCAATGAACAC-ACGGGACCGAACCA-AATTTT-GTC---GGACC-GAA-A-AAC---------CTA--------ATGT-AAAA-AAGTGAAA-CAC-GTGAA-AATGCAG---AACCAA-GGAAATC--T-----TATTT-ATTATAC---T-AATAC----T--ATTGATATTTT-ATGTTTTCA--A---GACTTCCAGGG-AT-CGCTC---------CCGCATAA---------TNCT-----TGAGA-CAGTCC-ATGC-GG-TTTT--AATCAC-------ACTCA-TTTA-C---GTACTTG----GATTTT-TGTGC---------TAC--------A-ATTTTT-AA--TA-CTCC-TGNCAAAA-------------CA-G--T--AAAAC---TCAAAACCGGACA--CTGAGACAT------C-GGACATTC-CG-GTCCGGTGTA-AAAAAGGA-TGCATCGGAC-CTGAGGCACTG-T--------AC----ATC--GGTC-AGGTCC------------GATGCATCGGACTTGAGGCACTGT--------ACATCGGTCAGGTCCGATGGTCCG-ATGTC-TTTCGCATAGACT
Reference ( family-2193 ) : GTCTATGCGAAAGTTT--TTT-G-AG-CCACACAGGACATTCGGTCC-T----GTGTA-----CTCAATGAACAC-ACGGGACCGAACCA-AATTTT-GTC---GGACC-GAA-A-AAC---------CTA--------ATGT-AAAA-AAGTGAAA-CAC-GTGAA-AATGCAG---AACCAA-GGAAATC--T-----TATTT-ATTATAC---T-AATAC----T--ATTGATATTTT-ATGTTTTCA--A---G---TCCAGGG-AT-CGCTC---------CCGCATAA---------TNCT-----TGAGA-CAGTCC-ATGC-GG-TTTT--AATCAC-------ACTCA-TTTA-C---GTACTTG----GATTTT-TGTGC---------TAC--------A-ATTTTT-AA--TA-CTCC-TGNCAAAA-------------CA-G--T--AAAAC---TCAAAACCGGACA--CTGAGACAT------C-GGACATTC-CG-GTCCGGTGTA-AAAAAGGA-TGCATCGGAC-CTGAGGCACTG-T--------AC----ATC--GGTC-AGGTCC------------GATGCATCGGACCTGAGGCACTGT--------ACATCGGTCAGGTCCGATGGTCCG-ATGTC-TTTCGCATAGACT
gi|1 : GTCTATGCGAAAGTTTATTTT-G--G-CCCCACAGGACATTCTGTTC-T----GTGTA-----CTCAATGAACAA-ACAGGACCGAACCA-AATTTT-G-----AGACG-AAA-A-AAC---------CTA--------ATGT----------GAAA-CAT-GAGAA-AATGCAG---AACCAA-GGAAATC--T-----TATTT-ATTATAC---T-AATAC----T--ATTGATATCTT-AT-TCTTC-----------TCT-GGC-AT-CGCTC---------CCGCATAA---------TACT-----TGAGA-CGGTCC-ATGC-GG-TTTT--AATCAC-------ACTCA-TTTA-C---GTACATGTAATGGTACT-TGAGCGA-------TAC--------ACATTTTTTAA--CAACTCCATGTCAAAA-------------CA-G--T--AAAAC---TCAAAATTGGACA--CTGAGACAT------C-GGACATTC-CA-GTCCGGTGTT-AAAAAGGA-TGCATAAGAC-CTGAGGCACTG-TACATATGCAC----ATC--GGTC-AGG-NG------------GATGCATAAGACTTGAGGCACTGTACATATGCACATCGGTCAGGTCTGATGGTCTGTATGTC-TTTCGCATAGACT
gi|10 : TGCAG---AACCAA-GGAAATC--G-----TATTT-ATTATAC---T-AATAC----T--GTTGATATTTC-ATGTTTTCAACA---GACTTCCAGAG-AT-TGCTC---------CTGAAAAA---------TTGT-----TGAGA-TAGTCC-ATGC-AG-TTTT--AATCAC-------ACTAA-TTTA-A---TTACTTA----AA--------------------AC--------A-A------A---------C-TGG--AAA-------------CA-G--------AC--------ATCAGACATTCTG----GT------C-GGA-------G-GTCCTGTGTA-CAAAAGGA-TGCATCGGTC-CTGAGAAACTG-T--------AC----ATC--GGTC-AGGTCT------------GATG
gi|11 : ATGAACAC-ACAGGACAAAACCA-AATT---GTC---AGACT-TAA-A-AAC---------TTAG-------ATGT-AAAAGAAGTGAA--CACTGTGAA-AATGCAG---AACCAA-GGAAATC--TTAAAATATTA-ACTATACCTTT-AATTA----T--ATTGATgtccaatgtctttcgcgtaaact
gi|12 : gtATGAACAC-ACAGGACCAAACCA-AATT---GTC---AGACTTAAA-A-AAC---------TTA--------ATGT-AAAA-AAGTGAAAACAC-TTGAA-AATGCAG---AACCAA-GGAAATC--T-----TAAAT-ATTA-AC---T-AATACT---T--ATT-ATATTgaaagtcaaatttttttttaaaaaacctatcaaacccaataagcgaggaaattgattcagagatgaatcaaacatt
gi|13 : ACAC-ACAGGACCAAACCA-AATT---GTC---AGACT-TAA-A-AAC---------TTA--------ATGT-AAAA-AAGTGAAA-CAC-TTGAA-AATGCAG---AACCAA-GGAAATC--T-----TAAAT-ATTA-AC---T-AATAC----TTAATT-ATATTattgaattcaaaattttttttttaaaaaacctatcaaaccaataa
gi|14 : TCAATTAACAC-ACAGGACCAAACCA-AATTCT-GTC---CGACC-G-A-A-AAC---------TTT--------ATGT-AAAA-AA-T----------TGAA-AATGCAG---AACCAA-GGAAATA--T-----Tgatgaattcaaaatttttttttaaaaacctatcaaaccaataa
gi|15 : GTCTATGCGAAAGTTT--TTTTG-GG-CCATACAGGACATTCAGTCC-T----GTGTA-----CTCAATGAACAC-AC
gi|16 : aGTCTACGTAAAAGTTT--TTT-G-GGGCCACACAGGACATTCGGTCC-A----GTGTG-----CTCAATGAACA
gi|2 : aGTATATGCGAAAGTTT--TTT-TTAG-CCACACAGGACATTCGGTCC-TTAGTATGTA-----CTCAATGAATAC-ACGGGACTGAACCA-AATTTT-GTC---GAACC-AAA-A-AAC---------CTA--------ATGT-AAAATAGGTGAAA-CAC-GTGAA-GATGCAG---AACCAA-GGAAATC--G-----TATTT-ATTATAC---T-AATAC----T--ATTGATATTTC-ATGTTTTCAACA---GACTTTCAGAG-AT-TGCTC---------CTGCAGAA---------TTGTTA---TGAGA-CAGTCC-ACGC-GG-TTTT--AATCAC-------ACTGA-TTTA-A---TTACTTA----AA--------------------AC--------A-A-----------A-CTC---------A-------------C----------AAC---TCTAAACCGAAAA--CTGAGACAT------T-GAACATTC-TG-GTCATGTGTA-CAAAAGGA-TGCATCGGAC-CTGAGACACTG-T--------AC----ATC--AGTC-TGGTCC------------GATGt
gi|3 : GTCTATGTGAAAGTTT--TT--G-AG-CCACACGGGACATTTGGTCC-T----ATCTATATTACTCAATGAACAC-ACAGGATTAAATCA-AATTTT-GTC---GGACC-GAC-A-TAC---------CTC--------ATGT-AAAA-AAG--------------------CAG---AACCAA-GGAAATC--T-----TATT-----ATAC---C-AATAC----T--ATTGATATTTT-ATGTTTTCA--A---GACTTCCAGAG-AT-TGTTC---------CCGCATAA---------AACTTGTAATGAGA-CGGTAC-ATG--------T--A--TGT-------GGTCA-TTTA-CA--ATGCTTG----GATTAT-TGTGC----------AG--------T-ATTTTT-A--------CC-T---AAAA-------------C---------AAACCT-TCAAAACCGGACAC-CTGAGACAT------CAAGACATTCTTG-GTACTGTGTA-CAAAA-GA-TGCATCGGAC---------TTG-T--------AC----ATC--GGTC-AGGTCT------------G-----TCGG-TCTGAtcttttgcataga
gi|3 : a------------GATGCATCGGACTTG--------T--------ACATCGGTCAGGTCTGTCGGTCTG-ATGTCTTTTCGCATAGACTtgtcttttcgcatagact
gi|4 : agtctatgtgaaagtttttgagccacacgggacatttggtcctatctatattactcaatgaacacacaggattaaatcaaattttgtcggaccgacatacctcatgtaaaaaagcagaaccaaggaaatcttattataccaatactattgatattttatgttttcaagacttccagagattgttcccgcataaaacttgtaatgagacggtacatgtatgtggtcatttacaatgcttggattattgtgcagtatttttacctaaaacaaaccttcaaaaccggacacctgagacatcaagacattcttggtactgtgtacaaaa-T----GTGTA-----CTCGATGAACAC-AGGGGACCAAACCA-AATTTT-GTC---AAATC-GGA-A-AAC---------CTA--------TTGT-AAAA-AA---AA-------TAAATAATGCAG---AACCAA-GGAAATC--T-----TATTT-ATTATTC---T-AATACTATAT--ATTGATATCTT-AT-TTTTC-----------TCT-GGC-AT-CATTC---------CTGCATAA---------T---------------------ATGC-GG-TTTA--AATCAT-------AATCA-TTTA-C---GTATTTG----AA--TT-TGTGCAATATTTTTTACCTAAAACAA-ACTTTT-AAATTA-CTCTGTGTCAAAA-------------TA-G--T--AAAACTTGTCAGAACCAAACA--CTGAGACAT------C-GGACATTT-CA-GTCCATTGTA-AAAAATGA-CACATCGGAC-TTAAGGCACTG-T--------AC----ATC--ATTC-AGGTAC------------AGTG
gi|4 : -CTGAGACATCG-G--------AC----ATT----TC-AG-TCCATTGTAAAAAATGACACATCGGACTTAAGGCACTGT--------ACATCATTCAGGTACAGTGGCCTG-ATGTC-TTTCGCATAGACTgcctgatgtctttcgcatagact
gi|5 : tgtgtactcgatgaacacaggggaccaaaccaaattttgtcaaatcggaaaacctattgtaaaaaaaataaataatgcagaaccaaggaaatcttatttattattctaatactatatattgatatcttatttttctctggcatcattcctgcataatatgcggtttaaatcataatcatttacgtatttgaatttgtgcaatattttttacctaaaacaaacttttaaattactctgtgtcaaaatagtaaaacttgtcagaaccaaacaTCAAT-AACACTACGAAAGAGACATA-AATTTC-GTCCGCAGCCC-GAG-A-AATAAGGACATTTTA--------TTGTTAAAA-AATT----------TGAA-AATGCAACTCAACCAA-GGAA---------------------TA----T-AATAC----T--ATTGATATTT----ATTCTC-----------T---GGC-AT-CGCTC---------CCGCATAA---------TACT-----TGAGAACA-TCC-ATTT-GG-TTTC--AGTCACGCTCTCAACTCG-TTTA-TTTAGTACCTA----GATTTC-TGTGA---------TA------------TTTTT-----TG-CTTT-AAACAAAAATTTAAATGAGTCCATG--T--CAAAC---TATAAACCAGACA--CTGAGGCAT------C-GGACATTC-TA-GTCTGGTGTA-AAAAATGT-TGCATCAAAC-CTGAGGCACTG-T--------GC----ATC--AGTC-AGGTCT------------GTTGCAT
gi|6 : atgttaacctGTCTATGCGAAAGTTT--TT--------------GGGT----GGTCCCT----GTGTA-----CTCAATGAACGC-ACCG-ACCGCACCACAATTTTTGTC---GGCCC-GAA-ACAAC---------CTA--------ATGT-AAAA---GTGAAA-CAG-GCGAA-AATGCAG---AAACAAAGGAAAT-------------T-CTTGTAC---------------------AGCTTTT-----TTTCT--A--------CCAGGG-AT-CGCTC---------C-GCATAA---------TTCT-----TGAGA-CAGTCC-ATGC-GGTTTTT--AATCTA-------ATTCT-TTTA-C---ATACTTT----GCTTTTCTGTGC---------T------------ATTTTT-GG--T--CT-C-TGTCAAAA-------------TA-GTTT--AAAAC---TC-AAACCGGACA--CTGA-------------AGA-ATTC-CATGTCCGGTGT--AAGTATTA-TGCATCGGAC-CCGAGGCGACG-TTATCA---AC----ATT--GGTC-AGGTCC------------GATGCagaatgtg
gi|7 : GTCTATGCGAAAGTTT--TT--------------GGGT----GGTCC-T----GTGTA-----CTCAATGAACGC-AACCGACCGACCCA-ATTTTTTGTC---GGACC-GAACA-AGC---------CTA--------ATGT-AAAA---GTGAAAACAG-GCGAA-AATGCAG---AAACAA-AGGAATT--C-----T---------------T-AGTAC-----------AGCTTTT----TCTTCT--A--------CCAGGG-ATTCGCCT---------CCGCATAA---------T-CT-----TGAGA-CAGTCC-ATGC-GG-TTTTT-AATCTA-------ATTCT-TTTAAC---ATACTTG----GTTTTTCTGTGC---------TA------------TTTTT-GG--T--CTC--TGTCAAAA-------------TA-G--TTTAAAAC---TCAAA--CGGACA--CTGAGA---------------ATTC-CATGTCCGGTGTA-AGTA-TTA-TGCATCGGAC-CCGAGGCACT--T--------ATCACAATT--GGTC-AGGTCC------------GATGCttttcacacagacaa
gi|8 : aACCAA-GGAAATCGTT-----TATTTTATTATAC---A-CATAC----T--GT-GATATTTTCATGTTTTCA--ACAGGACTTCCAGAGCAT-TGCTCTGAAAAAAACACCATAAACGAAAATATTGT-----TGAGA-TAGTCCCATGCCAG-TCTTTAAATCAC-------ACTAACTTTA-------AC--------ATT-------------------C--------A-CTCTTT-AA---A-C------ACAAAA-------------CT-G--G--ATAAC-------AAC---ACT--CCAAGACATTCTGGTC-GGA-------G-GTCCTGTGTACAAAAGGGACTGCATCGGTC-CTGAGAAACTGCT--------AC----ATC--GGTCAAGGTCT------------GATGtttcacacagaac
gi|9 : gacCAC-ATGGGACCGAACCA-AATTTT-GTC---AGACA-GAA-A-AGC---------CTATAACGTGTATAT-AAAA-CAGTAAAA-CAC-GTGAA-AATACAG---AACCAA-GGAAATT--T-----TATTC-ATTATAC---TAAATAC----T--GTTGATATTTT-AT-TCTTCgtccaatgtctctttc
gi|9 : atgcatg-TGACAAAA-------------CA-G--T--AAAAC---TTAAAACAGGACA--CTGAGACAT------C-AAACATTT-TG-GTCTGGTGTA-AAAAAGGA-TGCATCAGAC-CTGAGGCACTG-T--------AT----ATT--GGTC-AGGTTC------------GATGtctggcaaacatgacaaaacagtaaaacttaaaacaggacactgagacatcaaacattttggtctggtgtaaaaaaggatgcatcagacctgaggcactgtatattggtcaggttcgatggtccaatgtctttcacatagactg
gi|9 : atgcatgcacatgggaccgaaccaaattttgtcagacagaaaagcctataacgtgtatataaaacagtaaaacacgtgaaaatacagaaccaaggaaattttattcattatactaaatactgttgatattttattcttctctggcaaacaGGACACTGAGACATCA-A--------AC----ATTTTGGTC-TGGTGTAAAAAAG-----GATGCATCAGACCTGAGGCACTGT--------ATATTGGTCAGGTTCGATGGTCCA-ATGTC-TTTCACATAGACTgtccaatgtctttcacatagactg