lowQualScore : 111111111111111111111111111111111111111111111111111111111 1111111111111111111111111111111111111111111111111111 11111111111111111111111111111
lowQualScore : 1 88888888 11 9999999999999 33 1 1 111111 11111111111 2222222222222222222222222 222 11 11 3333 111 1 2222 111 1 22222 11 1 2 11 44444444444444444 111111 55 1 1 11 1 1 1 1 6666 11 1 33333 11 11 111 1 1 111 1 11 111 1 11 33333333333333 3 33 4444 222 33333333333 22 222 22 33333 2 1 55555 2 1 1 111111111111111111111111111111111111111111111111111111111 1 1 1 11 1 1 2222 1 1 1 1 1 1 888888888888888888 11 11 1 22 1 11 222222 1 6666666666666 333333333333 222222222222222222 3333333 2222222222222222222222222222222222222222222222222222 999999999999999999999999 1 77777777777777777777777777777
lowQualScore : 3 66666666 9 88 7777777777777 55 5 0 111111 4 4 3 6 444 44 11111111111 2222222222222222222222222 4 777 1 5 5 11 9 33 3 2 7777 777 6 2 0 7777 666 5 3 66666 33 0 77 0 33 99 55555555555555555 555555 55 0 0 2 33 6 0 0 2 0 1111 77 3 2 0 22222 55 11 8 111 0 0 999 0 111 0 2 33 111 0 11 8 88 88888888888888 5 11 1111 111 6 88888888888 22 111 44 99999 0 0 66666 9 3 0 0 0 777777777777777777777777777777777777777777777777777777777 3 0 0 2 2 5 33 0 5 6 3 3 2 9999 5 2 0 5 5 0 5 5 5 5 1 5 5 3 000000000000000000 4 33 77 6 11 8 8 6 8 5 0 3 8 22 0 0 11 8 0 999 222222 2 9 3 55 2 3 0 9999999999999 2 2 888888888888 5 5 666666666666666666 5 8888 5 5 9999 4444444 66 5 6666666666666666666666666666666666666666666666666666 5 5 5 555555555555555555555555 5 5 5 5 6 0 66 5 55555555555555555555555555555
lowQualScore : . ........ . .. ............. .. . . ...... . . . . ... .. ........... ......................... . ... . . . .. . .. . . .... ... . . . .... ... . . ..... .. . .. . .. .. ................. ...... .. . . . .. . . . . . .... .. . . . ..... .. .. . ... . . ... . ... . . .. ... . .. . .. .............. . .. .... ... . ........... .. ... .. ..... . . ..... . . . . . ......................................................... . . . . . . .. . . . . . . .... . . . . . . . . . . . . . . .................. . .. .. . .. . . . . . . . . .. . . .. . . ... ...... . . . .. . . . ............. . . ............ . . .................. . .... . . .... ....... .. . .................................................... . . . ........................ . . . . . . .. . .............................
lowQualScore : 3 00000000 8 88 5555555555555 55 0 0 333333 0 0 6 2 999 22 44444444444 0000000000000000000000000 3 999 4 7 7 77 9 22 2 0 0000 555 5 5 0 0000 000 5 2 88888 88 0 00 0 22 22 88888888888888888 888888 00 0 0 2 88 0 0 0 5 0 0000 22 2 5 0 00000 88 88 8 000 0 0 888 8 000 0 5 22 000 0 22 0 88 66666666666666 0 00 0000 888 0 22222222222 55 555 22 55555 0 0 55555 0 2 0 0 0 000000000000000000000000000000000000000000000000000000000 2 0 0 5 5 0 88 0 0 0 2 2 0 8888 0 5 0 5 0 0 0 7 0 0 4 0 0 0 666666666666666666 2 88 44 0 00 0 0 0 0 0 8 2 0 00 8 0 00 0 8 444 222222 5 2 2 88 5 2 0 5555555555555 2 5 777777777777 7 7 999999999999999999 7 3333 7 0 6666 8888888 99 0 2222222222222222222222222222222222222222222222222222 0 0 7 666666666666666666666666 0 0 0 0 0 0 99 0 11111111111111111111111111111
consensus : CATTAAATC-AATTTAT--TT---TTTTAATGAACTAGAT-AAAAACACACTNGAA-C------TTGATAGAAAGTTGGGAAATTTC-GATAAAT--AA-TC-TGA-GATTCC-TCTGACTCTT-A-CCCCGGCTT-----T-----TATAT--------CGT----GA-CATA-TCACATGTCAG--CTATATGAAAGC-GG-GGGTAAGA-GTCAGGGGANTCTCAC-ATTAATCAATAAAGCACGTTTATTA---ANAAGAGA-TGAAAGAAAAAAA-T-AATTTCTCAGGATATATAGATAAAATTTCAGTG-G-NAATTGC--AA-GAACTGTNNCTGCATCAAAGNCATTGTTTTTT-GANNAA-------T-TTT-T-T--TTTCAG--CCCG-TGGTCTTGATATTCCC-TCC--ATGAAGAC-GG-TNGTA-AATTA---TGATGTCGCTCGAGATATTGACACGCACACACA-CAGGATTGGACGCGAACAGGACGTGCAGGGTATGT-A-TAAATGTCAC-G-CTGATCGACGCTTG-T-ATAGCTTTGACA-GTGAAAGATATTTGT-AGAT-T-ATATTTATATAT-AAAGTAAGGTTTGCAACAACA-GGGAGAT-AACTCTTGATCGAGGTACCTCCATGCTC-CTCCCACTTTATG-ACATCACAGATGTACGTGGTCTATA------TAGGTTTGTATCGNCAGGGAGAA-GTCATNATATTTTTTCCAAAATATTTATTTT-AATAC--GC-GTCAGGTGTAAAGTCATTTGCCAGTAAAT-TGTCC-ATTTCAG--TC---AGTTGTT-GA-TTTTTTT-GGTTCTTCATGTATA--TATCG-TATAAGG-ATTGAA-GTCC-CTGCCTGGCTACTAA--GTATGTAGG-AACATGCGGAACTTCGTTTCGGCTATTAT-TG-TAACGACTAGT-AGTGCTATGCAACTT-TCTTGATGTTATA-ATACCAGCTCCTC-T-ACGGTGATGGTAA-TCTGA-TNTTCCTGAATAGA------T----TATGCTNATAATACCAAC--TAGTG-CTGTAAAATCGGAC--AAAA-TTTA-CTATCGATTATTAAATTGA-ATCGGCAGTACACAGTCGA-TTTAATAAAATCGATTA--TTT-GAACTTCCTCC-ATTTCNAA---TGCGTGGATCGAAAGGTTATGTAACGATGCATCATA-AATACCTAAATA-AN--AAAAAGTGTACG----GTC---TGTC-A-GTC--A-T---T-G-TC--A-CG-AGAA--T-AT-AAGAGTT-A-T-GTCCCTT-----A--GTAA-TATTAA----------------NANT--GAAAC-GTT-------A--------T----ATACTAC-TTCCGG-AATA-GTCAGCGACAAATCG------A-------TGTCCAA-AATTTATAATCG-ATTGT-CGCCAAG-TGCTG-CTTTCAGCGACGAT--T-TTTCG--AGTCGG-GAC--------------TATCGTAACAACAC
Reference ( gi|1 ) : CATTAAATC-AATTTATAGTTACATTTTAATGAACTAGAT-CAAAACACAC------C------TTGATAGAA-GTTGGGAAATGTC-GATAAAC--AG-TC-TGA-GATTCC-TCCGACTCTT-A-CCCCGGCTT-----T-----TATAT--------CAT----GA-CATA-TCACATGTCA---CTATATGAAAGT-GG-AGGTAAAA-ATCAGAGGAGTCTCAT-ATTAATCAATAAAGCGCG---GTTA---AGAAGAGA-TGAAAGAAAAAAAGT-AATTTCTCAGGATATATAGATAAAATTTCAGT--G-AAATTGC--AA-GAACTGTATCTG-ATCAAAAGCATTATTTTTT-GACCAA-------T-TTT-T-T--TTTCAGATCCCG-TGGTCTTGATATTCCC-TTC--ATTAAGAC-GG-TGGTA-AATTAAAATGATGGTGCTCGAGATATTGACACGCACACACA-CAGGATTGGACGCGAACAGGACGTGCAGGGTATGT-A-TAAATGTCAC-G-CTGATCGACACTTG-T-ATAGCTTTGACA-GTGAAAGATATTTGT-AGAT-T-ATATTTATATAT-AAAGTAAGGTTTGCAACAACA-GGGAGAT-AACTCTTGGTCGAGGTAACTCCATGCTCGCTCCCACTTTATGAACATC-CA-ATGTACCAGGCCTATA------TAG--TTGTATCGG-AGGGAGAACGTCATACTATTTTTTTCAAAATATTTA-TTT-AATACCGGCTGTCAGTTGTAAAGTCATTTG-CAGTAAAT-TGTCC-ATTTCAGATTCAGAAGTTGTT-GA-TTTTTTT-GA-----CATGTATA--TATCG-TATAAGACATTGAA-GTCC-CTGCCTGGATACTAA--GTATGTAGG-AACATGCCGAACTTTGTTTCGGCTATTGT-CGTTAACTACTAGT-AGTGCTATGCAACTT-TCTTGATGTTATA-ATACCAGCTCCTC-T-ACGGTGATGGTAA-TCTGA-TATTCCTGAATAGA-----CT----TATG-TAATAATACCAAC--TAGTA-CTGTAAAATTGGAC--AAAA-TTTA-CTATCGATTATCAAATTGA-ATTTGCAGTACACAGTCGA-TT--ATAAAATCCATTA--TTT-GAACTTCCTCC-ATTTCTGA---TGCGTGGATCAAAAGGTTATGTAACGATGCATCATA-AATAGTTACGTA-AAACAAAAAATGTACC----GTC---TGTC-A-GTC--A-T---T-G-TC--A-CA-AGAA--T-AT-AAGAGTT-A-T-GTCCCGT-----A--GTAA-TATTAA----------------CAAT--GAA----TT-------A--------T----ATACTAC-TTCTAG-AATA-GTCAG--------TG------A-------TGTCCAA-AATTTATAATCG-ATTGT-CGCCAAG-TACTG-TTTTCAGCGACGAT--T-TT--------------C--------------TATCGTAACAACAC
gi|4 : CATTAAATC-AATTTATA------TTTTAATGAACTAGAT-AAAAACACACTAGAAAC------TTGATAGAAAGTTGGGAAATTTC-GATAAAT--AA-TC-TGC-GATCCA-TCTGACTCTT-A-CCCCGGCTT-----T-----TATAT--------CAT----GA-CATA-TCACATGTCAGTACTATATGAAAGT-GG-AGGTAAAA-GTCAGGGGATTCTCAC-ATTAATCAATAAAGCACGTTTATTA---ATAAAAGA-TGAAAGAAAAAAA-T-AATTTCTCAGGATATATAGATAAAATTTCAGT--GGAAATTGC--AA-GAACTGTATCTG-ATCAAAAGCATTGTTTTT--GAC-AA-------T-TTT-T-T--TTTCAG--CCCG-TGGTCTTGATATTCCA-TCC--ATAAAGAC-GG-TTGTT-AATTA---TGATGTCGCTCGAGATATTGACACGCACACACA-CAGGATTGGACG--AACAGGACGTGCAGG-TATGT-A-TAAATGTCAC-G-CTGATCGACACTTG-T-ATAGCTTTGACA-GTGAAAGATATTTGT-AGAT-T-ATATTTATATAT-AAAGTAAGGTTTGCAACAACA-GGGAGA---------------------TCCATGCTC-CTCCCACTTTATG-ACATCACAGATGTACATGGTCTATA------TAGGTTTGTATCGGCAGGGAGAA-GTCATCATATTTTTTC---AATATTTATTTT-AATAC--GC-GTCAGGTGTAAAGTCATTTGCCAGTAAAT-TGTCC-ATTTCAG--TC---AGT--TT-GA-TTTTTTT----------TG--------------------GTTGAA-GTCC-CTGCCTGGCTACTAA--GTATGTAGG-AACATGCGGAACTTCGTTTCGGCTATTAT-TG-TAACGACTAGT-AGTGCTATGCAACTT-TCTTGATGTTATG-ATACCAGCTCCTC-T-ACAGTGATGGTAA-TCTGA-TATTCCTGAATAGA------G----TATG-TTATAATACCAAC--TAGTG-CTGTAAAATCGGAC--AAAA-TTTA-CTATCGATTATTAAATTGA-ATTGGCAGTACACAGTCGA-TT--ATAAAATCGATTA--TTT-GAACTTCCTCC-ATTTCAAA---TGCGTGGATCAAAAGGTTATGTAACGATGCATCATA-AATATCTAAATA-A---AAAAAGTGTAAG----GTCTA-TGTC-A-GTC--A-A---T-G-TC--A-CA-AGAA--T-AT-AAGAGTT-A-T-GTCCCTT-----A--GTAG-TATTAA----------------CAAT--GAA----T-----------------T----ATACTAC-TTCTAG-AAT
gi|2 : tCATTAAATC-AATTTAT--TC---TTTTAATGAACAAGATACAAACCACACTGAAA-C------TTGATAGA--GTTGGGAAAT-TC-GATAAAT--AAATC-TGGCGATCCA-TCTGACTCTT-A-CCC-GGCTT-----T-----TATAT--------CAC----GAACATAATCACATGTCAGTACTATATGAAAGT-GG-AG-TAAAACGTCAGGGGATTCTCACGATTAATCAATAA-GCACGTTTATTA---ATAAAAGAATGAAAGAAAAAAATC-AATTTCTCATG-TATATAGATAAAATTTCAGTGCG-AAATTGCCAAG-GAACTGTTGCTGCATCAAAGCTATTG-TTTTT-GA-CAA-------T-TTT-TGTTGTTTCAG--CCCGTTGGTCTTGATATTCCCATCC--ATGAAGAC-GGTTGTTA-GATT---ATGATGTCGCTCGAGATATTGACACGCACACACATCAGGATTGGA--CGAACAG--CGTGCAGGTAATGTAA-TAAATGTCACGG-CTGAT-GCCACTTGTT-ATAGCTTTGACC-GTGAAAGATATTTGTAAGAT-TAATATTTATATAT-AAAGTAAGGTTTGC--TAACACGGGAGAT-AACTTT--ATCGAGGT-ACTCCATGCTC-CTCCCACTTTATG-ACATCACAGATGTACATGGTCTATA------TAGGTTTGTATCGGCAGGGAGAA-GTCATCATATTTTTTC---AATATTTATTTT-AATAC--GC-GTCAGGTGTAAAGTCATTTGCCAGTAAAT-TGTCC-ATTTCAG--TC---AGT--TT-GATTTTTTTT-GGTTCTTCATGTATA--TATCATTATAAAGAATTG-A-GTCC-CT--CTGGCTACTAA--GTATGTAGGCAACATGCGGAACTTCG-TTCGGCTATTAT-TG-TAACGA-TAGTAAGTGC-AT-CAACTTGTCTTGAT-TTATGCATACCACTTCCTCTT-ACAGTGATGGTAATTCTGA-TATTCCTG-ATAGA-----------GATGCTTATAATA-CAAC--TAGTG-CTGTAAAATCGGACAAAAAA-TTTACCTATCGATTATTAAATTGACATTGGCAGTACACAGTCGA-TTTAATAAAATCGATTAATTTT-GAACTTCCTCC-A-TTCAAA---TGCGTGGCTCAAAAGGTTATGTAACGATGCATCATA-AATTCCTAAATA-AA--AAAAAGTGTAAG----GTCTCATGTC-A-GTCAAA-G---T-G-TCCTA-CA-AGAA--T-AT-AAGAGTT-ATT-GTCCT-T-----A--GTAAGTATTAAC---------------CAATGGGAA----T-----------------T----ATACTAC-TTCTAG-AATA-tttggagagagattggttcccaccaagatatattcgat
gi|3 : tAATCCAATTTA--ATT---CTTTAATGAAC-AGAT-ACAAACACACATGAA-C------TTGATAGA--GTTGGGAAATTTCTGATATATGAAA-TCATGC-GA--CCATCTGACTCTT-A-CCC-GGCTT-----T-----TAT-T--------CAG----GA-CATA-TCACATGTCAGA-C-ATATGAAAGT-GGCACGTCAAC-GTCAGGGGATTCTCAC-ATTAATCAATAAAGCACA---GTTATATAAAAGA-A-TGAAAGAAAAACAATCAATTTCTCAAT-TATA-AGATAAAATT-CAGT--G-CGAATGC--AAAGAACTGTTGCTGCATCAAA-GCATTGTCTTTT-GAGGAAACAGATTT-TTT-T-T--TTTCAG--CCCG-TGGTCTTGATATTTCC-CTCCAATGAATACTGG-TTGTACAATTA---TGATGTCGC-CGA-ATAATGACACGCACACACA-CAGGATTGA---CGAACAGA--GTG--AGGTATGT-AATAAATGTCAC-GGCTGATTG---CCTG-TTATAGCTTTGACACGTTGAAGATATTT-T--GATCT-ATATATATATATTAAAGTAAGGTTTGCA-TAACA-GGGAGATCAACT-TTATACGAGGTACCTCCATGCTCTCTCC-ACTTTATGA-CATCACA-ATGTACGTGGTCTATA------TAGG-TTGTATCGC-AGGGAA---GTCATAATATTTTCTTCAA--TATTTA-TTTTAATAC--GC-GTCAGGTGTAA-GTCATTTG-CCATAAATGTGTCCCATTTCAA--TCA----TTGTTTGA-TTTTTTTTGGTTCTTCATGTTTAACTATC--TATAA---ATCGAATGTCCTCTGC-----TACTAACCGTATGTGGC-AACATGGGAAACTTCGTT-CAGCTATTATTCGTCAACGACTATA-AGTGC-AT-CAACTT-TCTTGAT-TTATA-ATACCAGTTCCTC-TTACAGT-ATGGTAA-TTCGAATATTCCTGAATAGGATG--CT----TATA--AAT--CACCAAC--TAGTAGCTGTAAAATCGGAC--AAAAATTTA-CTATCGATTATTAAATTGA-ATTGGC--TATAAAGTCGA-TTTAATAAA---CATTA--TTTAGAACTTCCTCCGATTATCAA---TGTGTGG-TCAAAAGGTTATGTAAC-ATG-ATCATA-AATA-T--CCTA-ACTAAAAAAGTGTACA----GTC-----TC-ATATC--G-TATGT-G-TC--CTCA-AGAA--T-AT-AAGA-TT-A-T--TGCCTT-----A--GTAT-TATTAAC---------------CAATGGGAA----T-----------------T----ATACTAC-TTCTAG-AATA-
gi|5 : tcatctacTATATTTTAATGAACTAGAT-AAAAACACAC------CAGAAACTAGATAGAAAGTTGGGAAATGTC-GATAAAC--AA-TC-TGC-AATTCC-TCCAACTCTT-A-CCCCGGCTT-----T-----TATAT--------CAT----------------ATGTCA---CTATATAAAAGT-GG-AGGTAAGA-GTCAGAGGAATCTCAT-ATTAATCAATTAAGCGCG---ATTA---AGAAGAGA-CGAAAGAAAAAA--T-AATTTCTCAGAATATA--AATAAAATTTTCGTA-G-CAGTTGC--AA-GAACTGTATTTG-ATCAGAGTTATTGTTTTTGAGAAAAA-------TATTTAT-T--TTTCAG--CCCG-TGGTCTTGATATTCCC-TCC--ATAAAGAC-GG-TGGTA-AATTA---TGATGTTGCTCGAGATATTGACACGCACACACA-CAGGATTGGACG--AACGGGACGTGC-GGGTATGT-A-TAAATGTCGC-G-CTGGTCAACGCTTG-T-ATAGCTTTGACA-GTGAAAGTTATTTGT-AGAT-T-ATATTTATGTAT-AAAGTAAGGTTTGCAACAACA-GGGAGAT-AACTCTTGATCGAGGTACCTCCATGCTC-CTCCCACTTTATG-ACATCACA-ATGTA-CAGATCTATATACATGTAG--TTGTATCGC-AGGGAGAACGTCATA----TTTTCTCAA------TA-TTT-AGTACC-GCTATCAATTGTAAAGTCATTTG-CAGAAAGA-TGTCC-ATTTGAGATTC---AGTTGTT-GA-TTCTTTT-GG-----T-TCTATA--TATTG-TATAAGACATTGAA-GTCC-CTGCCTGGCCACTAA--ATATATAGG-AATATGCGGAACTTCGTTTCGGCTATTGT-TG-TAACGACTAGT-AGTGCTATGCAACTT-TCTTGACGTTATA-ATACCAGCTCCTC-T-ACGATGATGCTAA-TCTCA-TCTCCCTGAGTAGAGG---GTGTGGTGTGCTGATGATACTAGCTGTAATA-ATGTA
gi|19 : --AA-TC-TGA-GATTCT-TCTGACTCTT-A-CCCCTGCTTTTGAAT-----TACATG-------TAT----GA-CATA-gccccccgcttttcttgattttta
gi|26 : --AA-TC-CGA-GATTCC-CCAGACTCTTAA-CCCCCGCTT-----T-----TATAT--------TGT----GA-Ccagggaagagtcagaataaaagccatatta
gi|25 : cct--AA-TC-CGA-GATTTG-TCTGACTCTA-A-CCCCCGCTT-----TAATTTTATAT--------TGT----GA-CGTgaa
gi|17 : -TC-TGA-GATTGC-TCAG-CTCT--------GTCTC-----T-----TACATTTGAGGTACATGGGAGA-CCCA--CACATGT-A---TTATATAAAAGTGGG-GGGTAAGA-GTCAGAGGAATCTCAa
gi|17 : -TC-TGA-GATTCC-TCTGACTCTT-ACCCCCCACTT-----T-----TATAT--------AAT-----A-CATG-Tga
gi|5 : tctgagattgctcagctctgtctcttacatttgaggtacatgggagacccac-TGA-GATTCC-TCTGACTCTT-A-CCTCCACTT-----T-----TATAT--------AGT----GA-CAT------ATG--------ATATAAAAGC-CG-GGGTAAGA-GTTGGAGGAATTGCAG-ATT
gi|19 : tatattttaatgaactagataaaaacacaccagaaactagatagaaagttgggaaatgtcgataaac-TCTGACTCTT---CCCTG---------------TATGT--------CAT--------------ACATGTAA---TT---CAAAAGC-AG-GGGTAAGA-GTCAGAAGAATCTCAG-ATTtattaatcaattaagcgcgattaagaagagacgaaagaaaaaataatttctcagaatataaataaaattttcgtagcagttgcaagaactgtatttgatcagagttattgtttttgagaaaaatatttatttttcagcccgtggtcttgatattccctccataaagacggtggtaaattatgatgttgctcgagatattgacacgcacacacacaggattggacgaacgggacgtgcgggtatgtataaatgtcgcgctggtcaacgcttgtatagctttgacagtgaaagttatttgtagattatatttatgtataaagtaaggtttgcaacaacagggagataactcttgatcgaggtacctccatgctcctcccactttatgacatcacaatgtacagatctatatacatgtagttgtatcgcagggagaacgtcatattttctcaatatttagtaccgctatcaattgtaaagtcatttgcagaaagatgtccatttgagattcagttgttgattcttttggttctatatattgtataagacattgaagtccctgcctggccactaaatatataggaatatgcggaacttcgtttcggctattgttgtaacgactagtagtgctatgcaactttcttgacgttataataccagctcctctacgatgatgctaatctcatctccctgagtagagggtgtggtgtgctgatgatactagctgtaataatgtagccccccgcttttcttgattttta
gi|21 : TGTACCAACA-GGGAGAT-AACTCTTGAT----GCACCTCCGTACAC-TTCCCACTTTATataaaagccatatta
gi|8 : TA-ATACCAGCTCCTC-T-ACGATGACGATAA-TCTGA-TATTCCTGAATAAAGGATGCTG---TGTGCTGATGATACTAACTGTAATA-ATGTAatatattttgtatacatgtttgta
gi|22 : TA-ATACCAGCTCCTC-T-ATGATAATAGCAA-TCTGA-TCTTCCTGAATAGA-----gccaccgcctctctgattttttttcttttagggagggggggggggcagtcagaatttaaaaaaatcggagatagttatatttagctaagatgacatatgtatagtaccactgtctgtccatgtagactctaggtagccccgtgttacagtgctcagcctctcttgtcgcttgtacaacttttccatctggtaggcattccgtacattccagcagtcctctctgtgtaaatgag
gi|9 : TA-ATACCAGCTTCCC-T-ATTGATATAGCAA-TC-GA-TCTTCCTGAATAGggatgtggtgtactgatgatac
gi|24 : TACCAACTCCTC-T-ATGATGATGGTAA-TTTAA-TCTTCCTGAATAGA------G----TATA-TTATAATACCAAC--Tcggatgtggtgtatctgatgatactactgtaatatgtagtccctgcctctttgaattttttttagggagggagtgggggggggcgaaataaaaaatcgagatggtttaatattattgcagctaagatctagctccagatagtcctgtgttacagttgcccgcctctcttgtcacttcgtactaattttttccatctggtgatctgtacattccagcattaactctctgtgtaaatga
gi|7 : --TAGTG-TTGTAAAATCGGAC--TAAA-TTTA-CCATCGATTATTTAATTGA-ATCGGCAGTA---------------TGAAATCGATTA--TTT-GAACTTCCT------TTTAAAGTTGCAT--ATTGAA--------TAACG-TACA-CGTGGAATA--TGGGTATAGACATAGCAT-TACTTCATATT---TGTA-A-GTC--A-T---A-A-TT--A-CA-ACAA--A-GT-TAGGGTT-A-T-ATCCC-T-----AAAGTAA-TTTTAA----------------AACT--GAAATTGTT-------ACGGTGAATT----ATAGTAT-TTCTGG-AATA-GTCAG--------CG------ACAATCGATGTCCAA-AATTTATAATCG-ATTGT-CGCCAAG-TGCTG-CTTTCAGCGACGAT--T-TTTCGATAGTCGGCGAC--------------TATCGTAACAACAC
gi|6 : --TAGTG-TTGTAAAATCGGAC--AAAA-TTTA-CCATCGATTATTGAATCAA-ATCGGCAGTACACAATCGATTT--ATAAAATTGATTA--TAT-GAACT---TCC-ATTTt
gi|6 : TT---TGTC-A-GTC--A-T---A-G-TT--A-CG-AGAAAGT-TT-AA-AGTT-A-T-ATCCCTTTATTAA--GTAA-TATTAA----------------AACT--GAAACTGTTACCGTGAA--------T----ATACTAT-TTCCAG-AATA-GTCAGCGACAAT-CG------A-------TGTCCAA-ATTTTATAATCA-ATTGT-CGCCAAG-TGCTG-CTTTCAGCGATGAT--T-TTTCGATAGTCAGTGAC--------------TATTGTAACAACACtaaagttgcatattgattgaagtacacatatgacattcattttgagtgacagatatgccaataacacttagtttgctttgtagtaatgacatagatttacttcatatttgtcagtcatagttacgagaaagtttaaagttatatccctttattaagtaatattaaaactgaaactgttaccgtgaatatactatttccagaatagtcagcgacaatcgatgtccaaattttataatcaattgtcgccaagtgctgctttcagcgatgatttttcgatagtcagtgactattgtaacaacact
gi|10 : tagtgttgtaaaatcggacaaaatttaccatcgattattgaatcaaatcggcagtacacaatcgatttataaaattgattatatgaacttccattttaaagttgcatattgattgaagtacacatatgacattcattttgagtgacagatatgccaataacacttagtttgctttgtagtaatgacatagatttacttcata---TGTCGA-GTC--AGC---T-GATC----CAGAGAA--TCAT-TAGAGTT-A-CAGTCCCCTT----A--G-AA-TATAAAAAACTGAAACCCGTTACAGT--GAA----TT---------------------ATACTACTTTCCGGAAATACGTCGGGTGACAATTG------A-------TGTTCAACAATTTATAATTGCATTGTGGGCCAAGTTGCTG-CTTTCAACGACAAT--T-TT--------------t
gi|11 : TC-G-ATC--A-T---TTG-T---A-TG-AGAA--T-ATTAAGAGTTTA-A-GTTCCTTC----A--GTAA-TTATAA----------------AACT--GAACCGTTC-------A--------TTGAAATA-TAC-TGTCGG-AAAA-GACAG--------CGCAATCAA-------TGTTCAA-ACTTTATAATCG-AT-GT-CGCCAAG-TG-TGCTTTTAAGCAACGAT--T-TT--------------C--------------GATAGTtcgatgagtgagggataatctctaac
gi|12 : tTT-A-A-GTCCCTT-----A--GTAA-CATAAA----------------AACT--GAAACCGTT-------ACAGTGAATT----ATACTAT-ATCCGG-AATA-GTCAGCGACAAATTG------A-------TGTTCAA-AATTTATAATCG-ATTGT-CGCCAAG-TGCTG-CTTTCAGCGATGAT--T-TTTCGATAGTCGGCGAC--------------TATCATAACAAcagctagactatcgtacaaccactaaatt
gi|13 : G------A-------TGTTCAA-AATTTATAATCG-ATTGT-CGCCAAG-TGCTG-TTTTCAGCG-CGAT--TATTCGATAGTCGGCGA-C--------------TATCGTAACAACAgtacacta
gi|18 : gtatgagtgctggtcattgttagcgacaatcG------A-------TGTC----AATTTATAATCG-ATTGT-CGCCAAG-TGCTGTTTTTCAGCGACGATTAT-TT--------------CTGATAATCGGCGAATATCATAACAACAC
gi|20 : ------A-------TGTCCAA-AATTTATAATCG-ATTGT-CGCCAAG-TGCTG-TTTTCAGCGACGAT--T-TT--------------TCGATAATCGGCGAATATCATAACAACACt
4 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|14 ): AGATCTAGACTCCAGATAGTCCTGTGTTACAGTGCCCCGCCTCTCTTGTCACTTGTACAATTTTTCCATCTGGTGATCTGTACATTCCAGCATTACTCTCTGTGTAAATGA
Unaligned ( gi|15 ): TAGCTGTAATAATGTAGTCCCTGCCTCTTTGATTTTTTTTTAGGGAGGGAGTGGGGGGGGGGGCGAAATAAAAAAATCGGAGATGGTTATATTATTGCAGCT
Unaligned ( gi|16 ): AGCTGCAAATAATGTAGCCCCCTCCGATTTTTTTTATTCTGTCACGTTTACGGGAGAGAGAGAGAGAAAAAAAAAGGAGATGGCTACATTATTGCAACT
Unaligned ( gi|23 ): AGCTGCAATATGTAGCCCTCTCCGATTTTATAATTAAAAAAAGGAGAGGGCTACATTATTGCAGCC
Alignments
lowQualScore : 1 2222222 111111 22 1111 11111 222 11 111 1 1 1 111 11 2 11 2222222 1 11 111 111 1111 1 1 1 111111 1 111111 1 444 11 1 1 22 111 111 2 444444444444444444444444444444 11 1 1 1 1 111 5555555555555555555555 11 22 11 111 11 222222 22222 111 1111111 11111 9999999999999999999999 2 44444444444
lowQualScore : 0 0000000 0 6 0 8 888888 11 11 8 66 4 4 55 777 0000 4 55 11111 9999 1 4 444 77 0 555 5 3 2 55 5 1 8 0 666 8 8 8 8 88 6 0 0 0 444 0 11 8 22 0 8 0 33 99 6666666 8 6 8 11 8 8 8 8 1 8 1 222 444 0 8 5555 88 88 6 6 3 5 4 6 8 88 8 8 8 7 6 6 555555 2 6 6 3 9 99 1 888888 6 8 1 555 0 5 8 11 6 0 0 8 8 22 444 888 4 222222222222222222222222222222 0 8 5 11 8 0 8 8 8 8 0 0 8 0 5 8 0 4 4 1 555 6666666666666666666666 1 66 0 0 5 5 55 6 6 0 1 22 2 99 6 6 3 1 88 000 3 0 0 0 0 8 66 1 222222 8 00000 777 5 5 66 5555555 5 99999 66 5 5 4 777 0 4 55555 4 4 99 55 6666666666666666666666 4 4 4 66 0 4 8888 4 4 4 4 4 4 4 4 99999999999
lowQualScore : . ....... . . . . ...... .. .. . .. . . .. ... .... . .. ..... .... . . ... .. . ... . . . .. . . . . ... . . . . .. . . . . ... . .. . .. . . . .. .. ....... . . . .. . . . . . . . ... ... . . .... .. .. . . . . . . . .. . . . . . . ...... . . . . . .. . ...... . . . ... . . . .. . . . . . .. ... ... . .............................. . . . .. . . . . . . . . . . . . . . . . ... ...................... . .. . . . . .. . . . . .. . .. . . . . .. ... . . . . . . .. . ...... . ..... ... . . .. ....... . ..... .. . . . ... . . ..... . . .. .. ...................... . . . .. . . .... . . . . . . . . ...........
lowQualScore : 0 0000000 8 0 6 0 666666 00 44 0 99 4 4 11 888 7777 4 00 11111 4444 7 4 777 11 7 999 7 7 7 77 7 0 0 8 666 0 8 0 0 88 0 6 6 8 000 8 00 0 00 0 8 8 66 88 0000000 0 0 0 00 0 0 0 0 4 0 0 222 000 8 0 8888 88 88 0 0 2 6 6 0 0 88 0 0 0 3 7 7 555555 5 7 7 2 2 88 7 333333 6 0 0 444 8 6 0 00 0 8 0 0 0 00 000 666 0 222222222222222222222222222222 8 0 0 00 0 6 0 0 0 0 6 0 0 0 0 9 1 4 4 0 666 6666666666666666666666 0 11 2 1 0 0 88 7 7 7 0 55 5 22 7 7 2 0 33 222 2 7 8 8 8 0 22 8 444444 0 22222 999 0 0 99 4444444 0 11111 99 0 0 4 333 1 4 66666 4 4 99 44 6666666666666666666666 4 0 0 44 1 6 5555 0 0 4 4 4 4 4 4 77777777777
consensus : CATTAAATC-AATTTAT--TT---TTTTAATGAACTAGATAAAAAC-ACACCGGAAACTTGATAGAAAGTTGGGAAATTTC-GATAAAT--AA-TC-TGA-GATT---C--C-TCCGACTCTT-ACCCCGGC-----TTT----TATATCGT-GA-CATA-TCACATGTCAG--CTATATGAAA-GTGGAG-GTAAGA-GTCAGGGGANTCTCAC-ATTAATCAATAAAGCGCGTTTAT-TAANAAGAGA-TGAAAGAAAAA-AA-TCAATTTCTCAGGATATATAGATAAAATTTCAGTG-GAAATTGC--AA-GAACTGTATCTGCATCAAAGNCATTGTTTTTT-GANNAA-------T-TTT-TT-TTTCAG--CCCGT-GGTCTTGATATT-CCC-TCCA-TGAAGAC-GGTTGT-A-AATTA---TGATGTCGCTCGAGATATTGACACGCACACACA-CAGGATTGGACGCGAACAGGACGTGCAGGGTATGTAATAAATGTCACGGCTGATCGACACTTGTTATAGCTTTGACA-GTGAAAGATATTTGTA-GAT-TA-TATTTATATA-TAAAGTAAGGTTTGCAACAACA-GGGAGAT-AACTCTTGAT-CGAGGTACCTCCATGCTC-CTCCCACTTTATG-ACATCACA-ATGTACGTGGTCTATATAGGT----TTGTATCGGCAGGGAGAA-GTCATCATATTTTTTCC--AATATTTATTTTAATA-C--GCTGTCAGGTGTAAAGTCATTTGCCAGTAAAT-TGT-CCATTTCAGATTC---AGTTG-TTGATTTTTTTTGGTTCTTCATGTATA--TATCG-TAT-AAGACATTGAA-GTCCCTGCCTGGCTACTAA--GTATGTAGG-AACATGCGGAACTTCGTTTCGGCTATTATT-G-T-AACGACTAGT-AGTGCTATGCAACTT-TCTTGATGTTATA-ATACCAGCTCCTC-TACGGTGATGGTAA-TCTG-ATATTCCTGAATA---GA---T------TATG-------CTNATGA--TACCAACTAGT-GCTGTAA-AATCGGAC--AAAATTTA-CTATCGATTATTAAATTGA-ATCGGCAGTACACAGTCGATTT-ATAAAATCGATTA--TTT-GAACTTCCTCC-ATTTCAAA--TGCGTG--GATCGAAAGGTTATGTAACGATGCATCATA-AATA-CCTAAGT--A-A-AAAAAGTGT-ACG----GTC---TGTC-A-GTC--A-T---T-G-TC--A-CGAGAA--T-AT-AAGAGTT-A-T-GTCCC-TT-----A-GTAA-TATTAA-AAA-TGAAAC--GTT-AC-GTGAA-T----ATACTACTT-CCGGAA-TA-GTCAG-CGACAA-TCGATGT----CCAA-AATTTATAATCG-ATTGTCG-CCAAGT-GCTG-CTTTC-AGCGACGATT-TTTC-GATAGTCGGC--GACTATCGTAACAACAC
Reference ( family-213 ) : CATTAAATC-AATTTAT--TT---TTTTAATGAACTAGATAAAAAC-ACACTNGAA-CTTGATAGAAAGTTGGGAAATTTC-GATAAAT--AA-TC-TGA-GATT---C--C-TCTGACTCTT-ACCCCGGC-----TTT----TATATCGT-GA-CATA-TCACATGTCAG--CTATATGAAA-GCGGGG-GTAAGA-GTCAGGGGANTCTCAC-ATTAATCAATAAAGCACGTTTAT-TAANAAGAGA-TGAAAGAAAAA-AA-T-AATTTCTCAGGATATATAGATAAAATTTCAGTG-GNAATTGC--AA-GAACTGTNNCTGCATCAAAGNCATTGTTTTTT-GANNAA-------T-TTT-TT-TTTCAG--CCCGT-GGTCTTGATATT-CCC-TCCA-TGAAGAC-GGTNGT-A-AATTA---TGATGTCGCTCGAGATATTGACACGCACACACA-CAGGATTGGACGCGAACAGGACGTGCAGGGTATGTA-TAAATGTCACG-CTGATCGACGCTTGT-ATAGCTTTGACA-GTGAAAGATATTTGTA-GAT-TA-TATTTATATA-TAAAGTAAGGTTTGCAACAACA-GGGAGAT-AACTCTTGAT-CGAGGTACCTCCATGCTC-CTCCCACTTTATG-ACATCACAGATGTACGTGGTCTATATAGGT----TTGTATCGNCAGGGAGAA-GTCATNATATTTTTTCCAAAATATTTATTTTAATA-C--GC-GTCAGGTGTAAAGTCATTTGCCAGTAAAT-TGT-CCATTTCAG--TC---AGTTG-TTGA-TTTTTTTGGTTCTTCATGTATA--TATCG-TAT-AAGG-ATTGAA-GTCCCTGCCTGGCTACTAA--GTATGTAGG-AACATGCGGAACTTCGTTTCGGCTATTATT-G-T-AACGACTAGT-AGTGCTATGCAACTT-TCTTGATGTTATA-ATACCAGCTCCTC-TACGGTGATGGTAA-TCTG-ATNTTCCTGAATA---GA---T------TATG-------CTNATAA--TACCAACTAGT-GCTGTAA-AATCGGAC--AAAATTTA-CTATCGATTATTAAATTGA-ATCGGCAGTACACAGTCGATTTAATAAAATCGATTA--TTT-GAACTTCCTCC-ATTTCNAA--TGCGTG--GATCGAAAGGTTATGTAACGATGCATCATA-AATA-CCTAAAT--A-ANAAAAAGTGT-ACG----GTC---TGTC-A-GTC--A-T---T-G-TC--A-CGAGAA--T-AT-AAGAGTT-A-T-GTCCC-TT-----A-GTAA-TATTAA-NAN-TGAAAC--GTT-A--------T----ATACTACTT-CCGGAA-TA-GTCAG-CGACAAATCGATGT----CCAA-AATTTATAATCG-ATTGTCG-CCAAGT-GCTG-CTTTC-AGCGACGATT-TTTC-G--AGTCGG---GACTATCGTAACAACAC
gi|1 : CATTAAATC-AATTTATAGTTACATTTTAATGAACTAGATCAAAAC-ACAC------CTTGATAGAA-GTTGGGAAATGTC-GATAAAC--AG-TC-TGA-GATT---C--C-TCCGACTCTT-ACCCCGGC-----TTT----TATATCAT-GA-CATA-TCACATGTCA---CTATATGAAA-GTGGAG-GTAAAA-ATCAGAGGAGTCTCAT-ATTAATCAATAAAGCGCG---GT-TAAGAAGAGA-TGAAAGAAAAA-AAGT-AATTTCTCAGGATATATAGATAAAATTTCAGTG--AAATTGC--AA-GAACTGTATCTG-ATCAAAAGCATTATTTTTT-GACCAA-------T-TTT-TT-TTTCAGATCCCGT-GGTCTTGATATT-CCC-TTCA-TTAAGAC-GGTGGT-A-AATTAAAATGATGGTGCTCGAGATATTGACACGCACACACA-CAGGATTGGACGCGAACAGGACGTGCAGGGTATGTA-TAAATGTCACG-CTGATCGACACTTGT-ATAGCTTTGACA-GTGAAAGATATTTGTA-GAT-TA-TATTTATATA-TAAAGTAAGGTTTGCAACAACA-GGGAGAT-AACTCTTGGT-CGAGGTAACTCCATGCTCGCTCCCACTTTATGAACATC-CA-ATGTACCAGGCCTATATAG------TTGTATCGG-AGGGAGAACGTCATACTATTTTTTTCAAAATATTTA-TTTAATA-CCGGCTGTCAGTTGTAAAGTCATTTG-CAGTAAAT-TGT-CCATTTCAGATTCAGAAGTTG-TTGA-TTTTTTTGA-----CATGTATA--TATCG-TAT-AAGACATTGAA-GTCCCTGCCTGGATACTAA--GTATGTAGG-AACATGCCGAACTTTGTTTCGGCTATTGTC-GTT-AACTACTAGT-AGTGCTATGCAACTT-TCTTGATGTTATA-ATACCAGCTCCTC-TACGGTGATGGTAA-TCTG-ATATTCCTGAATA---GAC--T------TATG--------TAATAA--TACCAACTAGT-ACTGTAA-AATTGGAC--AAAATTTA-CTATCGATTATCAAATTGA-ATTTGCAGTACACAGTCGATT--ATAAAATCCATTA--TTT-GAACTTCCTCC-ATTTCTGA--TGCGTG--GATCAAAAGGTTATGTAACGATGCATCATA-AATA-GTTACGTAAA-ACAAAAAATGT-ACC----GTC---TGTC-A-GTC--A-T---T-G-TC--A-CAAGAA--T-AT-AAGAGTT-A-T-GTCCC-GT-----A-GTAA-TATTAA-CAA-TGAA-----TT-A--------T----ATACTACTT-CTAGAA-TA-GTCAG---------TGATGT----CCAA-AATTTATAATCG-ATTGTCG-CCAAGT-ACTG-TTTTC-AGCGACGATT-TT-----------------CTATCGTAACAACAC
gi|10 : ---TGTCGA-GTC--AGC---T-GATC--C-AGAGAA--TCAT-TAGAGTT-A-CAGTCCCCTT-----A-G-AA-TATAAA-AAACTGAAACCCGTT-ACAGTGAATT----ATACTACTTTCCGGAAATACGTCGGGTGACAA-TTGATGT----TCAACAATTTATAATTGCATTGTGGGCCAAGTTGCTG-CTTTC-AACGACAATT-TTTC-G--A
gi|11 : TC-G-ATC--A-T---TTG-T---A-TGAGAA--T-ATTAAGAGTTTA-A-GTTCC-TTC----A-GTAA-TTATAA-AAC-TGAACC--GTTCA--------TTGAAATA-TACTG-TCGGAA-AA-GACAG-CG-CAA-TCAATGT----TCAA-ACTTTATAATCG-A-TGTCG-CCAAGT-G-TG-CTTTTAAGCAACGA-T-TTTC-GATAGTCAGCTAGACTATCGT-ACAACtgagtgagggataatctctaac
gi|12 : tTT-A-A-GTCCC-TT-----A-GTAA-CATAAA-AAC-TGAAACC-GTT-ACAGTGAATT----ATACTATAT-CCGGAA-TA-GTCAG-CGACAAATTGATGT----TCAA-AATTTATAATCG-ATTGTCG-CCAAGT-GCTG-CTTTC-AGCGATGATT-TTTC-GATAGTCGGC--GACTATCATAACAAcactaaatt
gi|13 : A-TT-GTTAG-CGACAA-TCGATGT----TCAA-AATTTATAATCG-ATTGTCG-CCAAGT-GCTG-TTTTC-AGCG-CGATT-ATTC-GATAGTCGGC--GACTATCGTAACAACAgtacacta
gi|17 : gtatgagtgctggtc-TC-TGA-GATTGCTCAGC-TCTGTCTCTT-ACA----------TTTGAGGTACATGGGAGA-CCCA--CACATGT--A--TTATATAAAA-GTGGGGGGTAAGA-GTCAGAGGAATCTCA
gi|18 : GATGT----C----AATTTATAATCG-ATTGTCG-CCAAGT-GCTGTTTTTC-AGCGACGATTATTTCTGATAATCGGC--GAATATCATAACAACACga
gi|19 : --AA-TC-TGA-GATT---C--T-TCTGACTCTT-ACCCCTGC-----TTT-----------T-GA----A-TTACATG---------TATGACATACAGGG---AAGA-GTCAGt
gi|2 : CATTAAATC-AATTTAT--TC---TTTTAATGAACAAGATACAAACCACACTGAAA-CTTGATAGA--GTTGGGAAATT-C-GATAAAT--AAATC-TGGCGATC---C--A-TCTGACTCTT-ACCC-GGC-----TTT----TATATCAC-GAACATAATCACATGTCAGTACTATATGAAA-GTGGAG--TAAAACGTCAGGGGATTCTCACGATTAATCAATAA-GCACGTTTAT-TAATAAAAGAATGAAAGAAAAA-AA-TCAATTTCTCATG-TATATAGATAAAATTTCAGTGCGAAATTGCCAAG-GAACTGTTGCTGCATCAAAGCTATTGTTTTT--GACAAT-------T-TTTGTTGTTTCAG--CCCGTTGGTCTTGATATT-CCCATCCA-TGAAGAC-GGTTGTTA-GATTA---TGATGTCGCTCGAGATATTGACACGCACACACATCAGGATTGGACG--AACAG--CGTGCAGGTAATGTAATAAATGTCACGGCTGAT-GCCACTTGTTATAGCTTTGACC-GTGAAAGATATTTGTAAGAT-TAATATTTATATA-TAAAGTAAGGTTTGC--TAACACGGGAGAT-AACTTT--AT-CGAGGTAC-TCCATGCTC-CTCCCACTTTATG-ACATCACAGATGTACATGGTCTATATAGGT----TTGTATCGGCAGGGAGAA-GTCATCATATTTTTTC---AATATTTATTTTAATA-C--GC-GTCAGGTGTAAAGTCATTTGCCAGTAAAT-TGT-CCATTTCAG--TC---AGT---TTGATTTTTTTTGGTTCTTCATGTATA--TATCATTATAAAGA-ATTG-A-GTCCCT--CTGGCTACTAA--GTATGTAGGCAACATGCGGAACTTCG-TTCGGCTATTATT-G-T-AACGA-TAGTAAGTGC-AT-CAACTTGTCTTGAT-TTATGCATACCACTTCCTCTTACAGTGATGGTAATTCTG-ATATTCCTG-ATA---GA----------GATG-------CTTATAA--TA-CAACTAGT-GCTGTAA-AATCGGACAAAAAATTTACCTATCGATTATTAAATTGACATTGGCAGTACACAGTCGATTTAATAAAATCGATTAATTTT-GAACTTCCTCC-A-TTCAAA--TGCGTG--GCTCAAAAGGTTATGTAACGATGCATCATA-AATT-CCTAAAT--A-AAAAAAAGTGT-AAG----GTCTCATGTC-A-GTCAAA-G---T-G-TCCTA-CAAGAA--T-AT-AAGAGTT-ATT-GT-CC-TT-----A-GTAAGTATTAACCAA-TGGGA---AT-----------T----ATACTACTT-CTAGAA-TA-aataaaagccatatta
gi|20 : tATGT----CCAA-AATTTATAATCG-ATTGTCG-CCAAGT-GCTG-TTTTC-AGCGACGATT-TTTC-GATAATCGGC--GAATATCATAACAACAC
gi|21 : TGTACCAACA-GGGAGAT-AACTCTTGAT-----GCACCTCCGTACAC-TTCCCACTTTAT-----------ATATATTTTG--TATACATGT----TTGTAt
gi|22 : TA-ATACCAGCTCCTC-TATGATAATAGCAA-TCTG-ATCTTCCTGAATA---GA---G------GATGTGGTGTACTGATGA--TAC
gi|24 : TACCAACTCCTC-TATGATGATGGTAA-TTTA-ATCTTCCTGAATA---GA---G------TATA--------TTATAA--TACCAACT
gi|25 : T--AA-TC-CGA-GATT---T--G-TCTGACTCTA-ACCCCCGCTTTAATTT----TATATTGT-GA-CGT
gi|26 : T--AA-TC-CGA-GATT---C--C-CCAGACTCTTAACCCCCGC-----TTT----TATATTGT-GA-C
gi|3 : ccAATCCAATTTAA--TT---CTTTAATGAAC-AGATACAAAC-ACACATGAA-CTTGATAGA--GTTGGGAAATTTCTGATATATGAAA-TCATGC-GA-----C--CATCTGACTCTT-ACCC-GGC-----TTT----TAT-TCAG-GA-CATA-TCACATGTCAG--ACATATGAAA-GTGGCACGTCAAC-GTCAGGGGATTCTCAC-ATTAATCAATAAAGCACAGTTATATAA-AAGA-A-TGAAAGAAAAACAA-TCAATTTCTCAAT-TATA-AGATAAAATT-CAGTG-CGAAT-GC--AAAGAACTGTTGCTGCATCAAAG-CATTGTCTTTT-GAGGAAACAGATTT-TTT-TT-TTTCAG--CCCGT-GGTCTTGATATTTCCC-TCCAATGAATACTGGTTGT-ACAATTA---TGATGTCGC-CGA-ATAATGACACGCACACACA-CAGGATTGA---CGAACAGA--GTG--AGGTATGTAATAAATGTCACGGCTGATTG---CCTGTTATAGCTTTGACACGTTGAAGATATTT-T--GATCTA-TATATATATATTAAAGTAAGGTTTGC-ATAACA-GGGAGATCAACTTT--ATACGAGGTACCTCCATGCTC-TCTCCACTTTATG-ACATCACA-ATGTACGTGGTCTATATAGG-----TTGTATCG-CAGG--GAA-GTCATAATATTTTCTTC--AATATTTATTTTAATA-C--GC-GTCAGGTGT-AAGTCATTTGCCA-TAAATGTGTCCCATTTCAA--TC---A-TTGTTTGATTTTTTTTGGTTCTTCATGTTTAACTATC--TAT-AA---ATCGAATGTCC---TCT-GCTACTAACCGTATGTGGC-AACATGGGAAACTTCG-TTCAGCTATTATTCG-TCAACGACTATA-AGTGC-AT-CAACTT-TCTTGAT-TTATA-ATACCAGTTCCTCTTACAGT-ATGGTAA-TTCGAATATTCCTGAATA---GG-----------ATG-------CTTATAAATCACCAACTAGTAGCTGTAA-AATCGGACA-AAAATTTA-CTATCGATTATTAAATTGA-ATTGGC--TATAAAGTCGATTTAATAAA--C-ATTA--TTTAGAACTTCCTCCGATTATCAA--TGTGTG--G-TCAAAAGGTTATGTAAC-ATG-ATCATA-AATATCCTAACT--A---AAAAAGTGT-ACA----GTC-----TC-ATATC--G-TATGT-G-TC--CTCAAGAA--T-AT-AAGA-TT-A-T--TGCC-TT-----A-GTAT-TATTAACCAA-TGGGA---AT-----------T----ATACTACTT-CTAGAA-TA-gaa
gi|4 : tcatctacCATTAAATC-AATTTAT--AT---TTT-AATGAACTAGATAAAAAC-ACACTAGAAACTTGATAGAAAGTTGGGAAATTTC-GATAAAT--AA-TC-TGC-GATC---C--A-TCTGACTCTT-ACCCCGGC-----TTT----TATATCAT-GA-CATA-TCACATGTCAGTACTATATGAAA-GTGGAG-GTAAAA-GTCAGGGGATTCTCAC-ATTAATCAATAAAGCACGTTTAT-TAATAAAAGA-TGAAAGAAAAA-AA-T-AATTTCTCAGGATATATAGATAAAATTTCAGTG-GAAATTGC--AA-GAACTGTATCTG-ATCAAAAGCATTG-TTTTT-GA-CAA-------T-TTT-TT-TTTCAG--CCCGT-GGTCTTGATATT-CCA-TCCA-TAAAGAC-GGTTGT-T-AATTA---TGATGTCGCTCGAGATATTGACACGCACACACA-CAGGATTGGA--CGAACAGGACGTGCA-GGTATGTA-TAAATGTCACG-CTGATCGACACTTGT-ATAGCTTTGACA-GTGAAAGATATTTGTA-GAT-TA-TATTTATATA-TAAAGTAAGGTTTGCAACAACA-GGGAGA----------------------TCCATGCTC-CTCCCACTTTATG-ACATCACAGATGTACATGGTCTATATAGGT----TTGTATCGGCAGGGAGAA-GTCATCATATTTTTTC---AATATTTATTTTAATA-C--GC-GTCAGGTGTAAAGTCATTTGCCAGTAAAT-TGT-CCATTTCAG--TC---AGT---TTGATTTTTTTTGGT-------------------------------TGAA-GTCCCTGCCTGGCTACTAA--GTATGTAGG-AACATGCGGAACTTCGTTTCGGCTATTATT-G-T-AACGACTAGT-AGTGCTATGCAACTT-TCTTGATGTTATG-ATACCAGCTCCTC-TACAGTGATGGTAA-TCTG-ATATTCCTGAATA---GA---G------TATG--------TTATAA--TACCAACTAGT-GCTGTAA-AATCGGAC--AAAATTTA-CTATCGATTATTAAATTGA-ATTGGCAGTACACAGTCGATT--ATAAAATCGATTA--TTT-GAACTTCCTCC-ATTTCAAA--TGCGTG--GATCAAAAGGTTATGTAACGATGCATCATA-AATA-TCTAAAT--A-A-AAAAAGTGT-AAG----GTCTA-TGTC-A-GTC--A-A---T-G-TC--A-CAAGAA--T-AT-AAGAGTT-A-T-GTCCC-TT-----A-GTAG-TATTAA-CAA-TGAA-----T-----------T----ATACTACTT-CTAGAA-T--TTTGG-AGAGAGATTGGT-TCCCACCAA-GA--TATATTCG-AT
gi|5 : t---TTTTAATGAACTAGATAAAAAC-ACACCAGAAACTAGATAGAAAGTTGGGAAATGTC-GATAAAC--AA-TC-TGC-AATT---C--C-TCCAACTCTT-ACCCCGGC-----TTT----TATATCAT-------------ATGTCA---CTATATAAAA-GTGGAG-GTAAGA-GTCAGAGGAATCTCAT-ATTAATCAATTAAGCGCG---AT-TAAGAAGAGA-CGAAAGAAAAA-A--T-AATTTCTCAGAATATA--AATAAAATTTTCGTA-GCAGTTGC--AA-GAACTGTATTTG-ATCAGAGTTATTGTTTTTGAGAAAAA-------TATTTATT-TTTCAG--CCCGT-GGTCTTGATATT-CCC-TCCA-TAAAGAC-GGTGGT-A-AATTA---TGATGTTGCTCGAGATATTGACACGCACACACA-CAGGATTGGACG--AACGGGACGTGC-GGGTATGTA-TAAATGTCGCG-CTGGTCAACGCTTGT-ATAGCTTTGACA-GTGAAAGTTATTTGTA-GAT-TA-TATTTATGTA-TAAAGTAAGGTTTGCAACAACA-GGGAGAT-AACTCTTGAT-CGAGGTACCTCCATGCTC-CTCCCACTTTATG-ACATCACA-ATGTACA-GATCTATATACATGTAGTTGTATCG-CAGGGAGAA---CGTCATATTTTCTC---AATA-----TTTAGTACC--GCTATCAATTGTAAAGTCATTTG-CAGAAAGA-TGT-CCATTTGAGATTC---AGTTG-TTGA-TTCTTTTGGTTC------TATA--TATTG-TAT-AAGACATTGAA-GTCCCTGCCTGGCCACTAA--ATATATAGG-AATATGCGGAACTTCGTTTCGGCTATTGTT-G-T-AACGACTAGT-AGTGCTATGCAACTT-TCTTGACGTTATA-ATACCAGCTCCTC-TACGATGATGCTAA-TCTC-ATCTCCCTGAGTA---GAGGGTGTGG--TGTG-------CTGATGA--TACTA-------GCTGTAATAAT
gi|6 : tataTAGT-GTTGTAA-AATCGGAC--AAAATTTA-CCATCGATTATTGAATCAA-ATCGGCAGTACACAATCGATTT-ATAAAATTGATTA--TAT-GAACT---TCC-ATTTTAAAGTTGCATATTGATTGAAgtagccccccgcttttcttgattttta
gi|6 : TT---TGTC-A-GTC--A-T---A-G-TT--A-CGAGAAAGT-TT-AA-AGTT-A-T-ATCCC-TTTATTAA-GTAA-TATTAA-AAC-TGAAACT-GTT-ACCGTGAA-T----ATACTATTT-CCAGAA-TA-GTCAG-CGACAA-TCGATGT----CCAA-ATTTTATAATCA-ATTGTCG-CCAAGT-GCTG-CTTTC-AGCGATGATT-TTTC-GATAGTCAGT--GACTATTGTAACAACACgtacacatatgacattcattttgagtgacagatatgccaataacacttagtttgctttgtagtaatgacatagatttacttcatatttgtcagtcatagttacgagaaagtttaaagttatatccctttattaagtaatattaaaactgaaactgttaccgtgaatatactatttccagaatagtcagcgacaatcgatgtccaaattttataatcaattgtcgccaagtgctgctttcagcgatgatttttcgatagtcagtgactattgtaacaacact
gi|7 : tagtgttgtaaaatcggacaaaatttaccatcgattattgaatcaaatcggcagtacacaatcgatttataaaattgattatatgaacttccattttaaagttgcatattgattgaagtacacatatgacattcattttgagtgacagatatgccaataacacttagtttgctttgtagtaatgacatagatttacttcataTAGT-GTTGTAA-AATCGGAC--TAAATTTA-CCATCGATTATTTAATTGA-ATCGGCAGTA--------------TGAAATCGATTA--TTT-GAACTTCCT-----TTTAAAGTTGCAT----ATTGAA--------TAACG-TACA-CGTGGAATA---TGGGT--ATAGACATAGCATTACTTCATATT---TGTA-A-GTC--A-T---A-A-TT--A-CAACAA--A-GT-TAGGGTT-A-T-ATCCC-TA-----AAGTAA-TTTTAA-AAC-TGAAATT-GTT-ACGGTGAATT----ATAGTATTT-CTGGAA-TA-GTCAG-CGACAA-TCGATGT----CCAA-AATTTATAATCG-ATTGTCG-CCAAGT-GCTG-CTTTC-AGCGACGATT-TTTC-GATAGTCGGC--GACTATCGTAACAACACt
gi|8 : TA-ATACCAGCTCCTC-TACGATGACGATAA-TCTG-ATATTCCTGAATAAAGGA---TGCTG--TGTG-------CTGATGA--TACTAACTt
gi|9 : TA-ATACCAGCTTCCC-TATTGATATAGCAA-TC-G-ATCTTCCTGAATAGCGGA---TGTGGTGTAT--------CTGATGA--TAC-------T-ACTGTAA-TATgtaataatgtagccaccgcctctctgattttttttcttttagggagggggggggggcagtcagaatttaaaaaaatcggagatagttatatttagctaagatgacatatgtatagtaccactgtctgtccatgtagactctaggtagccccgtgttacagtgctcagcctctcttgtcgcttgtacaacttttccatctggtaggcattccgtacattccagcagtcctctctgtgtaaatgag
4 sequences could not be aligned to this reference sequence:
Unaligned ( gi|14 ): AGATCTAGACTCCAGATAGTCCTGTGTTACAGTGCCCCGCCTCTCTTGTCACTTGTACAATTTTTCCATCTGGTGATCTGTACATTCCAGCATTACTCTCTGTGTAAATGA
Unaligned ( gi|15 ): TAGCTGTAATAATGTAGTCCCTGCCTCTTTGATTTTTTTTTAGGGAGGGAGTGGGGGGGGGGGCGAAATAAAAAAATCGGAGATGGTTATATTATTGCAGCT
Unaligned ( gi|16 ): AGCTGCAAATAATGTAGCCCCCTCCGATTTTTTTTATTCTGTCACGTTTACGGGAGAGAGAGAGAGAAAAAAAAAGGAGATGGCTACATTATTGCAACT
Unaligned ( gi|23 ): AGCTGCAATATGTAGCCCTCTCCGATTTTATAATTAAAAAAAGGAGAGGGCTACATTATTGCAGCC
Alignments
lowQualScore : 1 2222222 111 22 11111 222222222222222222 222 111 1 1 1 11 2 11 2222222 1 11 111 111 1111 11 1 11 111111 1 111111 11 11 11 2 1 22 1111111 1 111111111111111 111 111 11 11 1 1 1 1 111 5555555555555555555555 1 11 111 11 2222222 22222 111 1111111 11111 11 77777777777777777777
lowQualScore : 0 0000000 0 6 0 8 777 5 11 11 8 66 4 4 55 44 4 4 3 11111 7 888888888888888888 0 555 5 5 5 1 8 0 666 8 8 8 8 777 0 0 0 6 3 11 8 22 0 8 0 33 99 6666666 8 6 8 11 8 8 8 8 1 8 0 222 444 0 8 5555 88 88 11 0 3 5 11 8 88 8 8 8 7 6 6 555555 2 6 6 3 3 99 1 888888 8 66 11 0 5 99 0 0 0 8 8 55 8888888 0 888888888888888 222 77 444 33 5 11 8 0 0 8 6 8 0 0 8 0 5 4 4 0 4 4 1 555 6666666666666666666666 1 66 6 0 5 5 6 99 6 6 0 1 1 888 2 99 6 6 6 3 88 000 3 0 0 0 0 8 66 1 1111111 8 8 00000 777 5 5 66 5555555 5 99999 66 5 5 4 777 0 4 55555 4 4 00 66 11111111111111111111 4 4 4 5 1 5 4 4 4 4 4 4 4 4 4 66
lowQualScore : . ....... . . . . ... . .. .. . .. . . .. .. . . . ..... . .................. . ... . . . . . . ... . . . . ... . . . . . .. . .. . . . .. .. ....... . . . .. . . . . . . . ... ... . . .... .. .. .. . . . .. . .. . . . . . . ...... . . . . . .. . ...... . .. .. . . .. . . . . . .. ....... . ............... ... .. ... .. . .. . . . . . . . . . . . . . . . . . ... ...................... . .. . . . . . .. . . . . . ... . .. . . . . .. ... . . . . . . .. . ....... . . ..... ... . . .. ....... . ..... .. . . . ... . . ..... . . .. .. .................... . . . . . . . . . . . . . . . ..
lowQualScore : 0 0000000 8 0 6 0 888 6 00 44 0 99 4 4 11 66 4 4 9 11111 2 000000000000000000 7 999 7 7 7 0 0 8 666 0 8 0 0 888 6 6 8 0 8 00 0 00 0 8 8 66 88 0000000 0 0 0 00 0 0 0 0 4 0 6 222 000 8 0 8888 88 88 44 0 2 6 44 0 88 0 0 0 3 7 7 555555 5 7 7 2 3 88 7 333333 0 44 00 8 6 00 4 8 0 0 0 88 8888888 6 000000000000000 000 22 444 22 0 00 0 8 8 0 0 0 6 0 0 0 0 4 4 1 4 4 7 666 6666666666666666666666 0 11 5 1 0 0 7 22 7 7 7 0 3 333 5 22 7 7 7 5 33 222 2 7 8 8 8 0 22 4 8888888 0 0 22222 999 0 0 99 4444444 0 11111 99 0 0 4 333 1 4 66666 4 4 66 11 99999999999999999999 4 0 4 7 4 7 4 4 4 4 4 4 4 4 4 99
consensus : CATTAAATC-AATTTAT--TT---TTTTAATGAACTAGATAAAAAC-ACACCGGAAACTTGATAGAAAGTTGGGAAATTTC-GATAAAT--AA-TC-TGA-GATTCC-TCCGACTCTT-ACCCCGGCTTT-----TATATCGTGA--CATA-T----------CACATGTCAG--CTATATGAAAGTGG-AGG-TAAGA-GTCAGGGGANTCTCAC-ATTAATCAATAAAGCGCGTTTAT-TAANAAGAGA-TGAAAGAAAAA-AATCAATTTCTCAGGATATATAGATAAAATTTCAGTGCGAAATTGC--AA-GAACTGTATCTGCATCAAAGNCATTGTTTTTT-GANNAA-------T-TTT-TT-TTTCAG--CCCGT-GGTCTTGATATT-CCC-TCCA-TGAAGAC-GGTTGT-A-AATTA---TGATGTCGCTCGAGATATTGACACGCACACACA-CAGGATTGGACGCGAACAGGACGTGCAGGGTATGTAATAAATGTCACGGCTGATCGACACTTGTTATAGCTTTGACA-GTGAAAGATATTTGTA-GAT-TA-TATTTATATA-TAAAGTAAGGTTTGCAACAACA-GGGAGAT-AACTCTTGAT-CGAGGTACCTCCATGCTC-CTCCCACTTTATGA-CATCACA-ATGTACGTGGTCTATATAGGT----TTGTATCGGCAGGGAGAA-GTCATCATATTTTTTCCAA--TATTTATTTTAATACC-GCTGTCAGGTGTAAAGTCATTTGCCAGTAAAT-TGT-CCATTTCAGATTCAG---TTG-TTGATTTTTTTTGGTTCTTCATGTATA--TATCGT-ATAAGACATTGAA-GTCCCTGCCTGGCTACTAA--GTATGTAGG-AACATGCGGAACTTCGTTTCGGCTATTATT-GT-AACGACTAGTA-GTGCTATGCAACTT-TCTTGATGTTATA-ATACCAGCTCCTC-T-ACGGTGATGGTAAT-CTG-ATATTCCTGAATA---GA---N------TATG-------CTNATGA--TACCAACTAGT-GCTGTAA-AATCGGAC-AAAA--TTTAC-TATCGATTATTAAATTGA-ATCGGCAGTACACAGTCGATTT-A-TAAAATCGATTA--TTT-GAACTTCCTCC-ATT-TCAAA--TGCGTG--GATCGAAAGGTTATGTAACGATGCATCATA-AATA-CCTAAGT-A-A---AAAA-AGTGT-ACG----GTC---TGTC-A-GTC--A-T---T-G-TC--A-CGAGAA--T-AT-AAGAGTT-A-T-GTCCC-TT-----A-GTAA-TATTAA-AAA-TGAAAC--GTTAC-G-TGAA-T-ATACTACTT-CCGGAA-TA-GTCAG-CGACAA-TCGATGTCCAA-AATTTATAATCG-ATTGTCG-CCAAGT-GCTG-CTTTC-AGCGACGATT-TTTC-GAT-AGTCGGC--GACTATCGTAACAACAC
Reference ( family-213 ) : CATTAAATC-AATTTAT--TT---TTTTAATGAACTAGATAAAAAC-ACACCGGAAACTTGATAGAAAGTTGGGAAATTTC-GATAAAT--AA-TC-TGA-GATTCC-TCCGACTCTT-ACCCCGGCTTT-----TATATCGTGA--CATA-T----------CACATGTCAG--CTATATGAAAGTGG-AGG-TAAGA-GTCAGGGGANTCTCAC-ATTAATCAATAAAGCGCGTTTAT-TAANAAGAGA-TGAAAGAAAAA-AATCAATTTCTCAGGATATATAGATAAAATTTCAGTG-GAAATTGC--AA-GAACTGTATCTGCATCAAAGNCATTGTTTTTT-GANNAA-------T-TTT-TT-TTTCAG--CCCGT-GGTCTTGATATT-CCC-TCCA-TGAAGAC-GGTTGT-A-AATTA---TGATGTCGCTCGAGATATTGACACGCACACACA-CAGGATTGGACGCGAACAGGACGTGCAGGGTATGTAATAAATGTCACGGCTGATCGACACTTGTTATAGCTTTGACA-GTGAAAGATATTTGTA-GAT-TA-TATTTATATA-TAAAGTAAGGTTTGCAACAACA-GGGAGAT-AACTCTTGAT-CGAGGTACCTCCATGCTC-CTCCCACTTTATGA-CATCACA-ATGTACGTGGTCTATATAGGT----TTGTATCGGCAGGGAGAA-GTCATCATATTTTTTCCAA--TATTTATTTTAATAC--GCTGTCAGGTGTAAAGTCATTTGCCAGTAAAT-TGT-CCATTTCAGATTCAG---TTG-TTGATTTTTTTTGGTTCTTCATGTATA--TATCGT-ATAAGACATTGAA-GTCCCTGCCTGGCTACTAA--GTATGTAGG-AACATGCGGAACTTCGTTTCGGCTATTATT-GT-AACGACTAGTA-GTGCTATGCAACTT-TCTTGATGTTATA-ATACCAGCTCCTC-T-ACGGTGATGGTAAT-CTG-ATATTCCTGAATA---GA---T------TATG-------CTNATGA--TACCAACTAGT-GCTGTAA-AATCGGAC-AAAA--TTTAC-TATCGATTATTAAATTGA-ATCGGCAGTACACAGTCGATTT-A-TAAAATCGATTA--TTT-GAACTTCCTCC-ATT-TCAAA--TGCGTG--GATCGAAAGGTTATGTAACGATGCATCATA-AATA-CCTAAGT-A-A---AAAA-AGTGT-ACG----GTC---TGTC-A-GTC--A-T---T-G-TC--A-CGAGAA--T-AT-AAGAGTT-A-T-GTCCC-TT-----A-GTAA-TATTAA-AAA-TGAAAC--GTTAC-G-TGAA-T-ATACTACTT-CCGGAA-TA-GTCAG-CGACAA-TCGATGTCCAA-AATTTATAATCG-ATTGTCG-CCAAGT-GCTG-CTTTC-AGCGACGATT-TTTC-GAT-AGTCGGC--GACTATCGTAACAACAC
gi|1 : CATTAAATC-AATTTATAGTTACATTTTAATGAACTAGATCAAAAC-ACACC------TTGATAGAA-GTTGGGAAATGTC-GATAAAC--AG-TC-TGA-GATTCC-TCCGACTCTT-ACCCCGGCTTT-----TATATCATGA--CATA-T----------CACATGTCA---CTATATGAAAGTGG-AGG-TAAAA-ATCAGAGGAGTCTCAT-ATTAATCAATAAAGCGCG---GT-TAAGAAGAGA-TGAAAGAAAAA-AAGTAATTTCTCAGGATATATAGATAAAATTTCAGTG--AAATTGC--AA-GAACTGTATCTG-ATCAAAAGCATTATTTTTT-GACCAA-------T-TTT-TT-TTTCAGATCCCGT-GGTCTTGATATT-CCC-TTCA-TTAAGAC-GGTGGT-A-AATTAAAATGATGGTGCTCGAGATATTGACACGCACACACA-CAGGATTGGACGCGAACAGGACGTGCAGGGTATGTA-TAAATGTCACG-CTGATCGACACTTGT-ATAGCTTTGACA-GTGAAAGATATTTGTA-GAT-TA-TATTTATATA-TAAAGTAAGGTTTGCAACAACA-GGGAGAT-AACTCTTGGT-CGAGGTAACTCCATGCTCGCTCCCACTTTATGAACATC-CA-ATGTACCAGGCCTATATAG------TTGTATCGG-AGGGAGAACGTCATACTATTTTTTTCAAAATATTTATTT-AATACCGGCTGTCAGTTGTAAAGTCATTTGC-AGTAAAT-TGT-CCATTTCAGATTCAGAAGTTG-TTGATTTTTTT-GA-----CATGTATA--TATCGT-ATAAGACATTGAA-GTCCCTGCCTGGATACTAA--GTATGTAGG-AACATGCCGAACTTTGTTTCGGCTATTGTC-GTTAACTACTAGTA-GTGCTATGCAACTT-TCTTGATGTTATA-ATACCAGCTCCTC-T-ACGGTGATGGTAAT-CTG-ATATTCCTGAATA---GAC--T------TATG--------TAATAA--TACCAACTAGT-ACTGTAA-AATTGGAC-AAAA--TTTAC-TATCGATTATCAAATTGA-ATTTGCAGTACACAGTCGA-TT-A-TAAAATCCATTA--TTT-GAACTTCCTCC-ATT-TCTGA--TGCGTG--GATCAAAAGGTTATGTAACGATGCATCATA-AATA-GTTACGT-A-AAACAAAA-AATGT-ACC----GTC---TGTC-A-GTC--A-T---T-G-TC--A-CAAGAA--T-AT-AAGAGTT-A-T-GTCCC-GT-----A-GTAA-TATTAA-CAA-TGAA-----TT--------A-T-ATACTACTT-CTAGAA-TA-GTCAG---------TGATGTCCAA-AATTTATAATCG-ATTGTCG-CCAAGT-ACTG-TTTTC-AGCGACGATT-TT------------------CTATCGTAACAACAC
gi|10 : ---TGTCGA-GTC--AGC---T-GATC--C-AGAGAA--TCAT-TAGAGTT-A-CAGTCCCCTT-----A-G-AA-TATAAA-AAACTGAAACCCGTTACAG-TGAA-TTATACTACTTTCCGGAAATACGTCGGGTGACAA-TTGATGTTCAACAATTTATAATTGCATTGTGGGCCAAGTTGCTG-CTTTC-AACGACAATT-TTTC-GATGAGT
gi|11 : TC-G-ATC--A-T---TTG-T---A-TGAGAA--T-ATTAAGAGTTTA-A-GTTCC-TTC----A-GTAA-TTATAA-AAC-TGAACC--GTTCA-T-TGAA---ATA-TACTG-TCGGAA-AA-GACAG-CG-CAA-TCAATGTTCAA-ACTTTATAATCG-A-TGTCG-CCAAGT-G-TG-CTTTTAAGCAACGA-T-TTTC-GAT-AGTCAGCTAGACTATCGT-ACAACgagggataatctctaac
gi|12 : tTT-A-A-GTCCC-TT-----A-GTAA-CATAAA-AAC-TGAAACC-GTTACAG-TGAA-TTATACTATAT-CCGGAA-TA-GTCAG-CGACAAATTGATGTTCAA-AATTTATAATCG-ATTGTCG-CCAAGT-GCTG-CTTTC-AGCGATGATT-TTTC-GAT-AGTCGGC--GACTATCATAACAAcactaaatt
gi|13 : A-TT-GTTAG-CGACAA-TCGATGTTCAA-AATTTATAATCG-ATTGTCG-CCAAGT-GCTG-TTTTC-AGCG-CGATT-ATTC-GAT-AGTCGGC--GACTATCGTAACAACAgtacacta
gi|17 : gtatgagtgctggtc-TC-TGA-GATTGC-TCAG-CTCT-------GTCTCT-----TACATT-TGAGGTACA-TGGGAGACCCACACATGT--A--TTATATAAAAGTGG-GGGGTAAGA-GTCAGAGGAATCTCA
gi|18 : GATGTC----AATTTATAATCG-ATTGTCG-CCAAGT-GCTGTTTTTC-AGCGACGATTATTTCTGAT-AATCGGC--GAATATCATAACAACACga
gi|19 : --AA-TC-TGA-GATTCT-TCTGACTCTT-ACCCCTGCTTT------------TGA-----A-T----------TACATG---------TATGACA-TAC-AGG-GAAGA-GTCAGt
gi|2 : CATTAAATC-AATTTAT--TC---TTTTAATGAACAAGATACAAACCACACTG-AAACTTGATAGA--GTTGGGAAATT-C-GATAAAT--AAATC-TGGCGATCCA-TCTGACTCTT-ACCC-GGCTTT-----TATATCACGAA-CATAAT----------CACATGTCAGTACTATATGAAAGTGG-AG--TAAAACGTCAGGGGATTCTCACGATTAATCAATAA-GCACGTTTAT-TAATAAAAGAATGAAAGAAAAA-AATCAATTTCTCATG-TATATAGATAAAATTTCAGTGCGAAATTGCCAAG-GAACTGTTGCTGCATCAAAGCTATTGTTTTT--GACAAT-------T-TTTGTTGTTTCAG--CCCGTTGGTCTTGATATT-CCCATCCA-TGAAGAC-GGTTGTTA-GATTA---TGATGTCGCTCGAGATATTGACACGCACACACATCAGGATTGGACG--AACAG--CGTGCAGGTAATGTAATAAATGTCACGGCTGAT-GCCACTTGTTATAGCTTTGACC-GTGAAAGATATTTGTAAGAT-TAATATTTATATA-TAAAGTAAGGTTTGC--TAACACGGGAGAT-AACTTT--AT-CGAGGTAC-TCCATGCTC-CTCCCACTTTATGA-CATCACAGATGTACATGGTCTATATAGGT----TTGTATCGGCAGGGAGAA-GTCATCATATTTTTTC-AA--TATTTATTTTAATAC--GC-GTCAGGTGTAAAGTCATTTGCCAGTAAAT-TGT-CCATTTCAG--TCAG---TT---TGATTTTTTTTGGTTCTTCATGTATA--TATCATTATAAAGAATTGA--GTCCCT--CTGGCTACTAA--GTATGTAGGCAACATGCGGAACTTCGTT-CGGCTATTATT-GT-AACGA-TAGTAAGTGC-AT-CAACTTGTCTTGAT-TTATGCATACCACTTCCTC-TTACAGTGATGGTAATTCTG-ATATTCCTGA-TA---GA---G-------ATG-------CTTATAA--TAC-AACTAGT-GCTGTAA-AATCGGAC-AAAAAATTTACCTATCGATTATTAAATTGACATTGGCAGTACACAGTCGATTT-AATAAAATCGATTAATTTT-GAACTTCCTCC-ATT--CAAA--TGCGTG--GCTCAAAAGGTTATGTAACGATGCATCATA-AATT-CCTAAATAA-A---AAAA-AGTGT-AAG----GTCTCATGTC-A-GTCAAA-G---T-G-TCCTA-CAAGAA--T-AT-AAGAGTT-ATT-GT-CC-TT-----A-GTAAGTATTAACCAA-TGG--------------GAATT-ATACTACTT-CTAGAA-TA-aataaaagccatatta
gi|20 : tATGTCCAA-AATTTATAATCG-ATTGTCG-CCAAGT-GCTG-TTTTC-AGCGACGATT-TTTC-GAT-AATCGGC--GAATATCATAACAACAC
gi|21 : TGTACCAACA-GGGAGAT-AACTCTTGAT-----GCACCTCCGTACAC-TTCCCACTTTAT-----------ATATATTTTG--TATACATGT----TTGTAt
gi|22 : TA-ATACCAGCTCCTC-T-ATGATAATAGCAAT-CTG-ATCTTCCTGAATA---GA---G------GATGTGGTGTACTGATGA--TAC
gi|24 : TACCAACTCCTC-T-ATGATGATGGTAAT-TTA-ATCTTCCTGAATA---GA---G------TATA--------TTATAA--TACCAACT
gi|25 : T--AA-TC-CGA-GATTTG-TCTGACTCTA-ACCCCCGCTTTAATTTTATATTGTGA--CGT
gi|26 : T--AA-TC-CGA-GATTCC-CCAGACTCTTAACCCCCGCTTT-----TATATTGTGA--C
gi|3 : ccAATCCAATTTAA--TT---CTTTAATGAAC-AGATACAAAC-ACACATGAA-CTTGATAGA--GTTGGGAAATTTCTGATATATGAAA-TCATGC-GA--CCATCTGACTCTT-ACCC-GGCTTT-----TAT-TCAGGA--CATA-T----------CACATGTCAG--ACATATGAAAGTGGCACG-TCAAC-GTCAGGGGATTCTCAC-ATTAATCAATAAAGCACAGTTATATAA-AAGA-A-TGAAAGAAAAACAATCAATTTCTCAAT-TATA-AGATAAAATT-CAGTGCGAA--TGC--AAAGAACTGTTGCTGCATCAAAG-CATTGTCTTTT-GAGGAAACAGATTT-TTT-TT-TTTCAG--CCCGT-GGTCTTGATATTTCCC-TCCAATGAATACTGGTTGT-ACAATTA---TGATGTCGC-CGA-ATAATGACACGCACACACA-CAGGATTGA---CGAACAGA--GTG--AGGTATGTAATAAATGTCACGGCTGATTG---CCTGTTATAGCTTTGACACGTTGAAGATATTT-T--GATCTA-TATATATATATTAAAGTAAGGTTTGC-ATAACA-GGGAGATCAACTTT--ATACGAGGTACCTCCATGCTC-TCTCCACTTTATGA-CATCACA-ATGTACGTGGTCTATATAGG-----TTGTATC-GCAGG--GAA-GTCATAATATTTTCTTCAA--TATTTATTTTAATAC--GC-GTCAGGTGT-AAGTCATTTGCCA-TAAATGTGTCCCATTTCAA--TCA----TTGTTTGATTTTTTTTGGTTCTTCATGTTTAACTATC-T-ATAA---ATCGAATGTCC---TCT-GCTACTAACCGTATGTGGC-AACATGGGAAACTTCG-TTCAGCTATTATTCGTCAACGACTATAA-GTGC-AT-CAACTT-TCTTGAT-TTATA-ATACCAGTTCCTCTT-ACAGT-ATGGTAAT-TCGAATATTCCTGAATA---GG-----------ATG-------CTTATAAATCACCAACTAGTAGCTGTAA-AATCGGACAAAAA--TTTAC-TATCGATTATTAAATTGA-ATTGGC--TATAAAGTCGATTTAA-TAAA--C-ATTA--TTTAGAACTTCCTCCGATTATC-AA--TGTGTG--G-TCAAAAGGTTATGTAAC-ATG-ATCATA-AATATCCTAACT---A---AAAA-AGTGT-ACA----GTC-----TC-ATATC--G-TATGT-G-TC--CTCAAGAA--T-AT-AAGA-TT-A-T--TGCC-TT-----A-GTAT-TATTAACCAA-TGG--------------GAATT-ATACTACTT-CTAGAA-TA-gaa
gi|4 : tcatctacCATTAAATC-AATTTAT--AT---TTT-AATGAACTAGATAAAAAC-ACACTAGAAACTTGATAGAAAGTTGGGAAATTTC-GATAAAT--AA-TC-TGC-GATCCA-TCTGACTCTT-ACCCCGGCTTT-----TATATCATGA--CATA-T----------CACATGTCAGTACTATATGAAAGTGG-AGG-TAAAA-GTCAGGGGATTCTCAC-ATTAATCAATAAAGCACGTTTAT-TAATAAAAGA-TGAAAGAAAAA-AAT-AATTTCTCAGGATATATAGATAAAATTTCAGTG-GAAATTGC--AA-GAACTGTATCTG-ATCAAAAGCATTG-TTTTT-GA-CAA-------T-TTT-TT-TTTCAG--CCCGT-GGTCTTGATATT-CCA-TCCA-TAAAGAC-GGTTGT-T-AATTA---TGATGTCGCTCGAGATATTGACACGCACACACA-CAGGATTGGA--CGAACAGGACGTGCA-GGTATGT-ATAAATGTCAC-GCTGATCGACACTTG-TATAGCTTTGACA-GTGAAAGATATTTGTA-GAT-TA-TATTTATATA-TAAAGTAAGGTTTGCAACAACA-GGGAGA----------------------TCCATGCTC-CTCCCACTTTATGA-CATCACAGATGTACATGGTCTATATAGGT----TTGTATCGGCAGGGAGAA-GTCATCATATTTTTT-CAA--TATTTATTTTAATAC--GC-GTCAGGTGTAAAGTCATTTGCCAGTAAAT-TGT-CCATTTCAG--TCAG---T---TTGATTTTTTTTGGT------TG---------------AAGTCCCTG------CCTG----GCTACTAA--GTATGTAGG-AACATGCGGAACTTCGTTTCGGCTATTATT-GT-AACGACTAGTA-GTGCTATGCAACTT-TCTTGATGTTATG-ATACCAGCTCCTC-T-ACAGTGATGGTAAT-CTG-ATATTCCTGAATA---GA---G------TATG--------TTATAA--TACCAACTAGT-GCTGTAA-AATCGGAC-AAAA--TTTAC-TATCGATTATTAAATTGA-ATTGGCAGTACACAGTCGA-TT-A-TAAAATCGATTA--TTT-GAACTTCCTCC-ATT-TCAAA--TGCGTG--GATCAAAAGGTTATGTAACGATGCATCATA-AATA-TCTAAAT-A-A---AAAA-AGTGT-AAG----GTCTA-TGTC-A-GTC--A-A---T-G-TC--A-CAAGAA--T-AT-AAGAGTT-A-T-GTCCC-TT-----A-GTAG-TATTAA-CAA-TGAA-----T-----------T-ATACTACTT-CTAGAA-T
gi|5 : t---TTTTAATGAACTAGATAAAAAC-ACACCAGAAACTAGATAGAAAGTTGGGAAATGTC-GATAAAC--AA-TC-TGC-AATTCC-TCCAACTCTT-ACCCCGGCTTT-----TATATCAT-----------------------ATGTCA---CTATATAAAAGTGG-AGG-TAAGA-GTCAGAGGAATCTCAT-ATTAATCAATTAAGCGCG---AT-TAAGAAGAGA-CGAAAGAAAAA-A--TAATTTCTCAGAATATA--AATAAAATTTTCGTA-GCAGTTGC--AA-GAACTGTATTTG-ATCAGAGTTATTGTTTTTGAGAAAAA-------TATTTATT-TTTCAG--CCCGT-GGTCTTGATATT-CCC-TCCA-TAAAGAC-GGTGGT-A-AATTA---TGATGTTGCTCGAGATATTGACACGCACACACA-CAGGATTGGACG--AACGGGACGTGC-GGGTATGTA-TAAATGTCGCG-CTGGTCAACGCTTGT-ATAGCTTTGACA-GTGAAAGTTATTTGTA-GAT-TA-TATTTATGTA-TAAAGTAAGGTTTGCAACAACA-GGGAGAT-AACTCTTGAT-CGAGGTACCTCCATGCTC-CTCCCACTTTATGA-CATCACA-ATGTACA-GATCTATATACATGTAGTTGTATCG-CAGGGAGAA---CGTCATATTTTCTC-AA--TATTTA-----GTACC-GCTATCAATTGTAAAGTCATTTGC-AGAAAGA-TGT-CCATTTGAGATTCAG---TTG-TTGATTCTTTT-GGTTCT------ATA--TATTGT-ATAAGACATTGAA-GTCCCTGCCTGGCCACTAA--ATATATAGG-AATATGCGGAACTTCGTTTCGGCTATTGTT-GT-AACGACTAGTA-GTGCTATGCAACTT-TCTTGACGTTATA-ATACCAGCTCCTC-T-ACGATGATGCTAAT-CTC-ATCTCCCTGAGTA---GAGGGTGTGG--TGTG-------CTGATGA--TACTA-------GCTGTAATAATtttggagagagattggttcccaccaagatatattcgat
gi|6 : tataTAGT-GTTGTAA-AATCGGAC-AAAA--TTTAC-CATCGATTATTGAATCAA-ATCGGCAGTACACAATCGATTT-A-TAAAATTGATTA--TAT-GAACT---TCC-ATT-TTAAAGTTGCATATTGATTGAAgtagccccccgcttttcttgattttta
gi|6 : TT---TGTC-A-GTC--A-T---A-G-TT--A-CGAGAAAGT-TT-AA-AGTT-A-T-ATCCC-TTTATTAA-GTAA-TATTAA-AAC-TGAAACT-GTTACCG-TGAA-T-ATACTATTT-CCAGAA-TA-GTCAG-CGACAA-TCGATGTCCAA-ATTTTATAATCA-ATTGTCG-CCAAGT-GCTG-CTTTC-AGCGATGATT-TTTC-GAT-AGTCAGT--GACTATTGTAACAACACgtacacatatgacattcattttgagtgacagatatgccaataacacttagtttgctttgtagtaatgacatagatttacttcatatttgtcagtcatagttacgagaaagtttaaagttatatccctttattaagtaatattaaaactgaaactgttaccgtgaatatactatttccagaatagtcagcgacaatcgatgtccaaattttataatcaattgtcgccaagtgctgctttcagcgatgatttttcgatagtcagtgactattgtaacaacact
gi|7 : tagtgttgtaaaatcggacaaaatttaccatcgattattgaatcaaatcggcagtacacaatcgatttataaaattgattatatgaacttccattttaaagttgcatattgattgaagtacacatatgacattcattttgagtgacagatatgccaataacacttagtttgctttgtagtaatgacatagatttacttcataTAGT-GTTGTAA-AATCGGAC-TAAA--TTTAC-CATCGATTATTTAATTGA-ATCGGCAGTA---------------TGAAATCGATTA--TTT-GAACTTCCT-----T-TTAAAGTTGCAT----ATTGAA--------TAACG-TACA-CGTGGAATA---TGGGT-ATA---GACATAGCATTACTTCATATT---TGTA-A-GTC--A-T---A-A-TT--A-CAACAA--A-GT-TAGGGTT-A-T-ATCCC-TA-----AAGTAA-TTTTAA-AAC-TGAAATT-GTTAC-GGTGAA-TTATAGTATTT-CTGGAA-TA-GTCAG-CGACAA-TCGATGTCCAA-AATTTATAATCG-ATTGTCG-CCAAGT-GCTG-CTTTC-AGCGACGATT-TTTC-GAT-AGTCGGC--GACTATCGTAACAACACt
gi|8 : TA-ATACCAGCTCCTC-T-ACGATGACGATAAT-CTG-ATATTCCTGAATAAAGGA---TGCTG--TGTG-------CTGATGA--TACTAACTt
gi|9 : TA-ATACCAGCTTCCC-T-ATTGATATAGCAAT-C-G-ATCTTCCTGAATAGCGGA---TGTGGTGTAT--------CTGATGA--TAC-------T-ACTGTAA-TATgtaataatgtagccaccgcctctctgattttttttcttttagggagggggggggggcagtcagaatttaaaaaaatcggagatagttatatttagctaagatgacatatgtatagtaccactgtctgtccatgtagactctaggtagccccgtgttacagtgctcagcctctcttgtcgcttgtacaacttttccatctggtaggcattccgtacattccagcagtcctctctgtgtaaatgag
4 sequences could not be aligned to this reference sequence:
Unaligned ( gi|14 ): AGATCTAGACTCCAGATAGTCCTGTGTTACAGTGCCCCGCCTCTCTTGTCACTTGTACAATTTTTCCATCTGGTGATCTGTACATTCCAGCATTACTCTCTGTGTAAATGA
Unaligned ( gi|15 ): TAGCTGTAATAATGTAGTCCCTGCCTCTTTGATTTTTTTTTAGGGAGGGAGTGGGGGGGGGGGCGAAATAAAAAAATCGGAGATGGTTATATTATTGCAGCT
Unaligned ( gi|16 ): AGCTGCAAATAATGTAGCCCCCTCCGATTTTTTTTATTCTGTCACGTTTACGGGAGAGAGAGAGAGAAAAAAAAAGGAGATGGCTACATTATTGCAACT
Unaligned ( gi|23 ): AGCTGCAATATGTAGCCCTCTCCGATTTTATAATTAAAAAAAGGAGAGGGCTACATTATTGCAGCC
Alignments
lowQualScore : 1 2222222 111 22 11111 222222222222222222 222 111 1 1 11 11 2 1 2222222 1 11 111 222 11 1 11 111111 1 111111 1 11 2 2 1 22 2222222 1 111111111111111111111 111 11 11 1 1 1 1 1 555555555555555555555 11 1111 11 111 11 2222222 22222 111 1111111 11111 11 77777777777777777777
lowQualScore : 0 0000000 0 6 0 8 777 5 11 11 8 66 4 4 55 44 4 4 3 11111 7 888888888888888888 0 555 5 0 5 5 1 8 6 666 8 8 8 8 777 0 0 0 8 55 3 11 8 22 0 8 0 8 99 6666666 8 6 8 11 8 8 8 8 1 8 0 8 8 444 0 8 000 88 88 11 0 3 5 11 8 88 8 8 8 7 6 6 555555 6 6 6 3 3 99 1 888888 8 6 11 0 5 0 8 0 0 0 8 8 55 3333333 0 999999999999999999999 77 444 33 5 11 8 0 8 6 8 0 0 8 0 5 8 0 4 4 1 777777777777777777777 1 66 0 0 5 5 55 6 6 0 1 4444 2 99 6 6 3 6 3 88 000 3 0 0 0 0 8 66 1 1111111 8 8 00000 777 5 5 66 5555555 5 99999 66 5 5 4 777 0 4 55555 4 4 00 66 11111111111111111111 4 4 4 5 1 5 4 4 4 4 4 4 4 4 4 66
lowQualScore : . ....... . . . . ... . .. .. . .. . . .. .. . . . ..... . .................. . ... . . . . . . . ... . . . . ... . . . . .. . .. . .. . . . . .. ....... . . . .. . . . . . . . . . ... . . ... .. .. .. . . . .. . .. . . . . . . ...... . . . . . .. . ...... . . .. . . . . . . . . . .. ....... . ..................... .. ... .. . .. . . . . . . . . . . . . . . . ..................... . .. . . . . .. . . . . .... . .. . . . . . .. ... . . . . . . .. . ....... . . ..... ... . . .. ....... . ..... .. . . . ... . . ..... . . .. .. .................... . . . . . . . . . . . . . . . ..
lowQualScore : 0 0000000 8 0 6 0 888 6 00 44 0 99 4 4 11 66 4 4 9 11111 2 000000000000000000 7 999 7 7 7 7 0 0 0 666 0 8 0 0 888 6 6 8 0 00 8 00 0 00 0 8 6 0 88 0000000 0 0 0 00 0 0 0 0 4 0 6 0 0 000 8 0 888 88 88 44 0 2 6 44 0 88 0 0 0 3 7 7 555555 7 7 7 2 3 88 7 333333 0 4 00 8 6 0 0 4 8 0 0 0 88 6666666 6 888888888888888888888 22 444 22 0 00 0 6 0 0 0 6 0 0 0 0 9 1 4 4 7 444444444444444444444 0 11 2 1 0 0 88 7 7 7 0 7777 5 22 7 7 2 7 5 33 222 2 7 8 8 8 0 22 4 8888888 0 0 22222 999 0 0 99 4444444 0 11111 99 0 0 4 333 1 4 66666 4 4 66 11 99999999999999999999 4 0 4 7 4 7 4 4 4 4 4 4 4 4 4 99
consensus : CATTAAATC-AATTTAT--TT---TTTTAATGAACTAGATAAAAAC-ACACCGGAAACTTGATAGAAAGTTGGGAAATTTC-GATAAAT--AA-TC-TGA-GATTCC-TCCGACTCTT-ACCCCGGCTTT-----TATATCGTGA--CATA-T----------CACATGTCAG--CTATATGAAAGTGG-AGG-TAAGA-GTCAGGGGANTCTCAC-ATTAATCAATAAAGCGCGTTTAT-TAANAAGAG-ATGAAAGAAAAA-AATCAATTTCTCAGGATATATAGATAAAATTTCAGT-GCGAAATTGC--AA-GAACTGTATCTGCATCAAAGNCATTGTTTTTT-GANNAA-------T-TTT-TT-TTTCAG--CCCG-TGGTCTTGATATT-CCC-TCCA-TGAAGAC-GGTTG-TA-AATTA---TGATGTCGCTCGAGATATTGACACGCACACACA-CAGGATTGGACGCGAACAGGACGTGCAGGGTATGTAATAAATGTCACGGCTGATCGACACTTGTTATAGCTTTGACA-GTGAAAGATATTTGT-AGAT-T-ATATTTATATA-TAAAGTAAGGTTTGCAACAACA-GGGAGAT-AACTCTTGAT-CGAGGTACCTCCATGCTC-CTCCCACTTTATGA-CATCACA-ATGTACGTGGTCTATATAGGT----TTGTATCGGCAGGGAGAA-GTCATCATATTTTTTTCAA--TATTTATTTTAATACCG-CTGTCAGGTGTAAAGTCATTTGCCAGTAAAT-TGT-CCATTTCAGATTCAG---TTG-TTGATTTTTTTTGGTTCTTCATGTATA--TATCG-TATAAGACATTGAA-GTCCCTGCCTGGCTACTAA--GTATGTAGG-AACATGCGGAACTTCGTTTCGGCTATTATT-GT-AACGACTAGT-AGTGCTATGCAACTT-TCTTGATGTTATA-ATACCAGCTCCTC-TACGGTGATGGTAA-TCTG-ATATTCCTGAATAGA-------GTATG--------CTNATGA--TACCAACTAGT-GCTGTAA-AATCGGAC--AAAATTTA-CTATCGATTATTAAATTGA-ATCGGCAGTACACAGTCGATTT-ATAAAATCGATTA--TTT-GAACTTCCTCC-ATT-TCAAA--TGCGTG--GATCGAAAGGTTATGTAACGATGCATCATA-AATA-CCTAAGT-A-A---AAAA-AGTGT-ACG----GTC---TGTC-A-GTC--A-T---T-G-TC--A-CGAGAA--T-AT-AAGAGTT-A-T-GTCCC-TT-----A-GTAA-TATTAA-AAA-TGAAAC--GTTAC-G-TGAA-T-ATACTACTT-CCGGAA-TA-GTCAG-CGACAA-TCGATGTCCAA-AATTTATAATCG-ATTGTCG-CCAAGT-GCTG-CTTTC-AGCGACGATT-TTTC-GAT-AGTCGGC--GACTATCGTAACAACAC
Reference ( family-213 ) : CATTAAATC-AATTTAT--TT---TTTTAATGAACTAGATAAAAAC-ACACCGGAAACTTGATAGAAAGTTGGGAAATTTC-GATAAAT--AA-TC-TGA-GATTCC-TCCGACTCTT-ACCCCGGCTTT-----TATATCGTGA--CATA-T----------CACATGTCAG--CTATATGAAAGTGG-AGG-TAAGA-GTCAGGGGANTCTCAC-ATTAATCAATAAAGCGCGTTTAT-TAANAAGAG-ATGAAAGAAAAA-AATCAATTTCTCAGGATATATAGATAAAATTTCAGT-GCGAAATTGC--AA-GAACTGTATCTGCATCAAAGNCATTGTTTTTT-GANNAA-------T-TTT-TT-TTTCAG--CCCG-TGGTCTTGATATT-CCC-TCCA-TGAAGAC-GGTTG-TA-AATTA---TGATGTCGCTCGAGATATTGACACGCACACACA-CAGGATTGGACGCGAACAGGACGTGCAGGGTATGTAATAAATGTCACGGCTGATCGACACTTGTTATAGCTTTGACA-GTGAAAGATATTTGT-AGAT-T-ATATTTATATA-TAAAGTAAGGTTTGCAACAACA-GGGAGAT-AACTCTTGAT-CGAGGTACCTCCATGCTC-CTCCCACTTTATGA-CATCACA-ATGTACGTGGTCTATATAGGT----TTGTATCGGCAGGGAGAA-GTCATCATATTTTTTCCAA--TATTTATTTTAATACCG-CTGTCAGGTGTAAAGTCATTTGCCAGTAAAT-TGT-CCATTTCAGATTCAG---TTG-TTGATTTTTTTTGGTTCTTCATGTATA--TATCG-TATAAGACATTGAA-GTCCCTGCCTGGCTACTAA--GTATGTAGG-AACATGCGGAACTTCGTTTCGGCTATTATT-GT-AACGACTAGT-AGTGCTATGCAACTT-TCTTGATGTTATA-ATACCAGCTCCTC-TACGGTGATGGTAA-TCTG-ATATTCCTGAATAGA-------NTATG--------CTNATGA--TACCAACTAGT-GCTGTAA-AATCGGAC--AAAATTTA-CTATCGATTATTAAATTGA-ATCGGCAGTACACAGTCGATTT-ATAAAATCGATTA--TTT-GAACTTCCTCC-ATT-TCAAA--TGCGTG--GATCGAAAGGTTATGTAACGATGCATCATA-AATA-CCTAAGT-A-A---AAAA-AGTGT-ACG----GTC---TGTC-A-GTC--A-T---T-G-TC--A-CGAGAA--T-AT-AAGAGTT-A-T-GTCCC-TT-----A-GTAA-TATTAA-AAA-TGAAAC--GTTAC-G-TGAA-T-ATACTACTT-CCGGAA-TA-GTCAG-CGACAA-TCGATGTCCAA-AATTTATAATCG-ATTGTCG-CCAAGT-GCTG-CTTTC-AGCGACGATT-TTTC-GAT-AGTCGGC--GACTATCGTAACAACAC
gi|1 : CATTAAATC-AATTTATAGTTACATTTTAATGAACTAGATCAAAAC-ACACC------TTGATAGAA-GTTGGGAAATGTC-GATAAAC--AG-TC-TGA-GATTCC-TCCGACTCTT-ACCCCGGCTTT-----TATATCATGA--CATA-T----------CACATGTCA---CTATATGAAAGTGG-AGG-TAAAA-ATCAGAGGAGTCTCAT-ATTAATCAATAAAGCGCG---GT-TAAGAAGAG-ATGAAAGAAAAA-AAGTAATTTCTCAGGATATATAGATAAAATTTCAGT-G--AAATTGC--AA-GAACTGTATCTG-ATCAAAAGCATTATTTTTT-GACCAA-------T-TTT-TT-TTTCAGATCCCG-TGGTCTTGATATT-CCC-TTCA-TTAAGAC-GGTGG-TA-AATTAAAATGATGGTGCTCGAGATATTGACACGCACACACA-CAGGATTGGACGCGAACAGGACGTGCAGGGTATGTA-TAAATGTCACG-CTGATCGACACTTGT-ATAGCTTTGACA-GTGAAAGATATTTGT-AGAT-T-ATATTTATATA-TAAAGTAAGGTTTGCAACAACA-GGGAGAT-AACTCTTGGT-CGAGGTAACTCCATGCTCGCTCCCACTTTATGAACATC-CA-ATGTACCAGGCCTATATAG------TTGTATCGG-AGGGAGAACGTCATACTATTTTTTTCAAAATATTTATTT-AATACCGGCTGTCAGTTGTAAAGTCATTTGC-AGTAAAT-TGT-CCATTTCAGATTCAGAAGTTG-TTGATTTTTTT-GA-----CATGTATA--TATCG-TATAAGACATTGAA-GTCCCTGCCTGGATACTAA--GTATGTAGG-AACATGCCGAACTTTGTTTCGGCTATTGTC-GTTAACTACTAGT-AGTGCTATGCAACTT-TCTTGATGTTATA-ATACCAGCTCCTC-TACGGTGATGGTAA-TCTG-ATATTCCTGAATAGAC------TTATG---------TAATAA--TACCAACTAGT-ACTGTAA-AATTGGAC--AAAATTTA-CTATCGATTATCAAATTGA-ATTTGCAGTACACAGTCGA-TT-ATAAAATCCATTA--TTT-GAACTTCCTCC-ATT-TCTGA--TGCGTG--GATCAAAAGGTTATGTAACGATGCATCATA-AATA-GTTACGT-A-AAACAAAA-AATGT-ACC----GTC---TGTC-A-GTC--A-T---T-G-TC--A-CAAGAA--T-AT-AAGAGTT-A-T-GTCCC-GT-----A-GTAA-TATTAA-CAA-TGAA-----TT--------A-T-ATACTACTT-CTAGAA-TA-GTCAG---------TGATGTCCAA-AATTTATAATCG-ATTGTCG-CCAAGT-ACTG-TTTTC-AGCGACGATT-TT------------------CTATCGTAACAACAC
gi|10 : ---TGTCGA-GTC--AGC---T-GATC--C-AGAGAA--TCAT-TAGAGTT-A-CAGTCCCCTT-----A-G-AA-TATAAA-AAACTGAAACCCGTTACAG-TGAA-TTATACTACTTTCCGGAAATACGTCGGGTGACAA-TTGATGTTCAACAATTTATAATTGCATTGTGGGCCAAGTTGCTG-CTTTC-AACGACAATT-TTTC-GATGAGT
gi|11 : TC-G-ATC--A-T---TTG-T---A-TGAGAA--T-ATTAAGAGTTTA-A-GTTCC-TTC----A-GTAA-TTATAA-AAC-TGAACC--GTTCA-T-TGAA---ATA-TACTG-TCGGAA-AA-GACAG-CG-CAA-TCAATGTTCAA-ACTTTATAATCG-A-TGTCG-CCAAGT-G-TG-CTTTTAAGCAACGA-T-TTTC-GAT-AGTCAGCTAGACTATCGT-ACAACgagggataatctctaac
gi|12 : tTT-A-A-GTCCC-TT-----A-GTAA-CATAAA-AAC-TGAAACC-GTTACAG-TGAA-TTATACTATAT-CCGGAA-TA-GTCAG-CGACAAATTGATGTTCAA-AATTTATAATCG-ATTGTCG-CCAAGT-GCTG-CTTTC-AGCGATGATT-TTTC-GAT-AGTCGGC--GACTATCATAACAAcactaaatt
gi|13 : A-TT-GTTAG-CGACAA-TCGATGTTCAA-AATTTATAATCG-ATTGTCG-CCAAGT-GCTG-TTTTC-AGCG-CGATT-ATTC-GAT-AGTCGGC--GACTATCGTAACAACAgtacacta
gi|17 : gtatgagtgctggtc-TC-TGA-GATTGC-TCAG-CTCT-------GTCTCT-----TACATT-TGAGGTACA-TGGGAGACCCACACATGT--A--TTATATAAAAGTGG-GGGGTAAGA-GTCAGAGGAATCTCA
gi|18 : GATGTC----AATTTATAATCG-ATTGTCG-CCAAGT-GCTGTTTTTC-AGCGACGATTATTTCTGAT-AATCGGC--GAATATCATAACAACACga
gi|19 : --AA-TC-TGA-GATTCT-TCTGACTCTT-ACCCCTGCTTT------------TGA-----A-T----------TACATG---------TATGACA-TAC-AGG-GAAGA-GTCAGt
gi|2 : CATTAAATC-AATTTAT--TC---TTTTAATGAACAAGATACAAACCACACTG-AAACTTGATAGA--GTTGGGAAATT-C-GATAAAT--AAATC-TGGCGATCCA-TCTGACTCTT-ACCC-GGCTTT-----TATATCACGAA-CATAAT----------CACATGTCAGTACTATATGAAAGTGG-A-G-TAAAACGTCAGGGGATTCTCACGATTAATCAAT-AAGCACGTTTAT-TAATAAAAGAATGAAAGAAAAA-AATCAATTTCTCATG-TATATAGATAAAATTTCAGT-GCGAAATTGCCAAG-GAACTGTTGCTGCATCAAAGCTATTG-TTTTT-GACAAT-------T-TTTGTTGTTTCAG--CCCGTTGGTCTTGATATT-CCCATCCA-TGAAGAC-GGTTGTTA-GATTA---TGATGTCGCTCGAGATATTGACACGCACACACATCAGGATTGGA--CGAACAG--CGTGCAGGTAATGTAATAAATGTCACGGCTGAT-GCCACTTGTTATAGCTTTGACC-GTGAAAGATATTTGTAAGAT-TAATATTTATATA-TAAAGTAAGGTTTGC--TAACACGGGAGAT-AACTTT--AT-CGAGGTA-CTCCATGCTC-CTCCCACTTTATGA-CATCACAGATGTACATGGTCTATATAGGT----TTGTATCGGCAGGGAGAA-GTCATCATATTTTTT-CAA--TATTTATTTTAATA-CG-C-GTCAGGTGTAAAGTCATTTGCCAGTAAAT-TGT-CCATTTCAG--TCAG---T---TTGATTTTTTTTGGTTCTTCATGTATA--TATCATTATAAAGAATTG-A-GTCCCT--CTGGCTACTAA--GTATGTAGGCAACATGCGGAACTTCG-TTCGGCTATTATT-GT-AACGA-TAGTAAGTGC-AT-CAACTTGTCTTGAT-TTATGCATACCACTTCCTCTTACAGTGATGGTAATTCTG-ATATTCCTG-ATAGA-------G-ATG--------CTTATAA--TA-CAACTAGT-GCTGTAA-AATCGGACAAAAAATTTACCTATCGATTATTAAATTGACATTGGCAGTACACAGTCGATTTAATAAAATCGATTAATTTT-GAACTTCCTCC-A-T-TCAAA--TGCGTG--GCTCAAAAGGTTATGTAACGATGCATCATA-AATT-CCTAAATAA-A---AAAA-AGTGT-AAG----GTCTCATGTC-A-GTCAAA-G---T-G-TCCTA-CAAGAA--T-AT-AAGAGTT-ATT-GT-CC-TT-----A-GTAAGTATTAACCAA-TGG--------------GAATT-ATACTACTT-CTAGAA-TA-aataaaagccatatta
gi|20 : tATGTCCAA-AATTTATAATCG-ATTGTCG-CCAAGT-GCTG-TTTTC-AGCGACGATT-TTTC-GAT-AATCGGC--GAATATCATAACAACAC
gi|21 : TGTACCAACA-GGGAGAT-AACTCTTGAT-----GCACCTCCGTACAC-TTCCCACTTTAT-----------ATATATTTTG--TATACATGT----TTGTAt
gi|22 : TA-ATACCAGCTCCTC-TATGATAATAGCAA-TCTG-ATCTTCCTGAATAGA-------GGATGTGGTGTA-CTGATGA--TAC
gi|24 : TACCAACTCCTC-TATGATGATGGTAA-TTTA-ATCTTCCTGAATAGA-------GTATA---------TTATAA--TACCAACT
gi|25 : T--AA-TC-CGA-GATTTG-TCTGACTCTA-ACCCCCGCTTTAATTTTATATTGTGA--CGT
gi|26 : T--AA-TC-CGA-GATTCC-CCAGACTCTTAACCCCCGCTTT-----TATATTGTGA--C
gi|3 : ccAATCCAATTTAA--TT---CTTTAATGAAC-AGATACAAAC-ACACATGAA-CTTGATAGA--GTTGGGAAATTTCTGATATATGAAA-TCATGC-GA--CCATCTGACTCTT-ACCC-GGCTTT-----TAT-TCAGGA--CATA-T----------CACATGTCAG--ACATATGAAAGTGGCACG-TCAAC-GTCAGGGGATTCTCAC-ATTAATCAATAAAGCACAGTTATATAA-AAGA--ATGAAAGAAAAACAATCAATTTCTCAAT-TATA-AGATAAAATT-CAGT-GCGAA--TGC--AAAGAACTGTTGCTGCATCAAAG-CATTGTCTTTT-GAGGAAACAGATTT-TTT-TT-TTTCAG--CCCG-TGGTCTTGATATTTCCC-TCCAATGAATACTGGTTG-TACAATTA---TGATGTCGC-CGA-ATAATGACACGCACACACA-CAGGATTGA---CGAACAGA--GTG--AGGTATGTAATAAATGTCACGGCTGATTG---CCTGTTATAGCTTTGACACGTTGAAGATATTT-T--GATCT-ATATATATATATTAAAGTAAGGTTTGC-ATAACA-GGGAGATCAACTTT--ATACGAGGTACCTCCATGCTC-TCTCCACTTTATGA-CATCACA-ATGTACGTGGTCTATATAGG-----TTGTATC-GCAGG--GAA-GTCATAATATTTTCTTCAA--TATTTATTTTAATA-CG-C-GTCAGGTGT-AAGTCATTTGCCA-TAAATGTGTCCCATTTCAA--TCA----TTGTTTGATTTTTTTTGGTTCTTCATGTTTAACTATC--TATAA---ATCGAATGTCC---TCT-GCTACTAACCGTATGTGGC-AACATGGGAAACTTCG-TTCAGCTATTATTCGTCAACGACTATA-AGTGC-AT-CAACTT-TCTTGAT-TTATA-ATACCAGTTCCTCTTACAGT-ATGGTAA-TTCGAATATTCCTGAATAGG---------ATG--------CTTATAAATCACCAACTAGTAGCTGTAA-AATCGGACA-AAAATTTA-CTATCGATTATTAAATTGA-ATTGGC--TATAAAGTCGATTTAATAAA--C-ATTA--TTTAGAACTTCCTCCGATTATC-AA--TGTGTG--G-TCAAAAGGTTATGTAAC-ATG-ATCATA-AATATCCTAACT---A---AAAA-AGTGT-ACA----GTC-----TC-ATATC--G-TATGT-G-TC--CTCAAGAA--T-AT-AAGA-TT-A-T--TGCC-TT-----A-GTAT-TATTAACCAA-TGG--------------GAATT-ATACTACTT-CTAGAA-TA-gaa
gi|4 : tcatctacCATTAAATC-AATTTAT--AT---TTT-AATGAACTAGATAAAAAC-ACACTAGAAACTTGATAGAAAGTTGGGAAATTTC-GATAAAT--AA-TC-TGC-GATCCA-TCTGACTCTT-ACCCCGGCTTT-----TATATCATGA--CATA-T----------CACATGTCAGTACTATATGAAAGTGG-AGG-TAAAA-GTCAGGGGATTCTCAC-ATTAATCAATAAAGCACGTTTAT-TAATAAAAG-ATGAAAGAAAAA-AAT-AATTTCTCAGGATATATAGATAAAATTTCAGT-G-GAAATTGC--AA-GAACTGTATCTG-ATCAAAAGCATTG-TTTTT-GA-CAA-------T-TTT-TT-TTTCAG--CCCG-TGGTCTTGATATT-CCA-TCCA-TAAAGAC-GGTTG-TT-AATTA---TGATGTCGCTCGAGATATTGACACGCACACACA-CAGGATTGGA--CGAACAGGACGTGCA-GGTATGT-ATAAATGTCAC-GCTGATCGACACTTG-TATAGCTTTGACA-GTGAAAGATATTTGT-AGAT-T-ATATTTATATA-TAAAGTAAGGTTTGCAACAACA-GGGAGA----------------------TCCATGCTC-CTCCCACTTTATGA-CATCACAGATGTACATGGTCTATATAGGT----TTGTATCGGCAGGGAGAA-GTCATCATATTTTTT-CAA--TATTTATTTTAATA-CG-C-GTCAGGTGTAAAGTCATTTGCCAGTAAAT-TGT-CCATTTCAG--TCAG---T---TTGATTTTTTTTGGT------TG---------------AAGTCCCTG------CCTG----GCTACTAA--GTATGTAGG-AACATGCGGAACTTCGTTTCGGCTATTATT-GT-AACGACTAGT-AGTGCTATGCAACTT-TCTTGATGTTATG-ATACCAGCTCCTC-TACAGTGATGGTAA-TCTG-ATATTCCTGAATAGA-------GTATG---------TTATAA--TACCAACTAGT-GCTGTAA-AATCGGAC--AAAATTTA-CTATCGATTATTAAATTGA-ATTGGCAGTACACAGTCGA-TT-ATAAAATCGATTA--TTT-GAACTTCCTCC-ATT-TCAAA--TGCGTG--GATCAAAAGGTTATGTAACGATGCATCATA-AATA-TCTAAAT-A-A---AAAA-AGTGT-AAG----GTCTA-TGTC-A-GTC--A-A---T-G-TC--A-CAAGAA--T-AT-AAGAGTT-A-T-GTCCC-TT-----A-GTAG-TATTAA-CAA-TGAA-----T-----------T-ATACTACTT-CTAGAA-T
gi|5 : t---TTTTAATGAACTAGATAAAAAC-ACACCAGAAACTAGATAGAAAGTTGGGAAATGTC-GATAAAC--AA-TC-TGC-AATTCC-TCCAACTCTT-ACCCCGGCTTT-----TATATCAT-----------------------ATGTCA---CTATATAAAAGTGG-AGG-TAAGA-GTCAGAGGAATCTCAT-ATTAATCAATTAAGCGCG---AT-TAAGAAGAG-ACGAAAGAAAAA-A--TAATTTCTCAGAATATA--AATAAAATTTTCGTAGC--AGTTGC--AA-GAACTGTATTTG-ATCAGAGTTATTGTTTTTGAGAAAAA-------TATTTATT-TTTCAG--CCCG-TGGTCTTGATATT-CCC-TCCA-TAAAGAC-GGTGG-TA-AATTA---TGATGTTGCTCGAGATATTGACACGCACACACA-CAGGATTGGACG--AACGGGACGTGC-GGGTATGTA-TAAATGTCGCG-CTGGTCAACGCTTGT-ATAGCTTTGACA-GTGAAAGTTATTTGT-AGAT-T-ATATTTATGTA-TAAAGTAAGGTTTGCAACAACA-GGGAGAT-AACTCTTGAT-CGAGGTACCTCCATGCTC-CTCCCACTTTATGA-CATCACA-ATGTACA-GATCTATATACATGTAGTTGTATCG-CAGGGAGAA---CGTCATATTTTCTC-AA--TATTTA-----GTACCG-CTATCAATTGTAAAGTCATTTGC-AGAAAGA-TGT-CCATTTGAGATTCAG---TTG-TTGATTCTTTT-GGTTCT------ATA--TATTG-TATAAGACATTGAA-GTCCCTGCCTGGCCACTAA--ATATATAGG-AATATGCGGAACTTCGTTTCGGCTATTGTT-GT-AACGACTAGT-AGTGCTATGCAACTT-TCTTGACGTTATA-ATACCAGCTCCTC-TACGATGATGCTAA-TCTC-ATCTCCCTGAGTAGAGGGTGTGGTGTG--------CTGATGA--TACTA-------GCTGTAATAATtttggagagagattggttcccaccaagatatattcgat
gi|6 : tataTAGT-GTTGTAA-AATCGGAC--AAAATTTA-CCATCGATTATTGAATCAA-ATCGGCAGTACACAATCGATTT-ATAAAATTGATTA--TAT-GAACT---TCC-ATT-TTAAAGTTGCATATTGATTGAAgtagccccccgcttttcttgattttta
gi|6 : TT---TGTC-A-GTC--A-T---A-G-TT--A-CGAGAAAGT-TT-AA-AGTT-A-T-ATCCC-TTTATTAA-GTAA-TATTAA-AAC-TGAAACT-GTTACCG-TGAA-T-ATACTATTT-CCAGAA-TA-GTCAG-CGACAA-TCGATGTCCAA-ATTTTATAATCA-ATTGTCG-CCAAGT-GCTG-CTTTC-AGCGATGATT-TTTC-GAT-AGTCAGT--GACTATTGTAACAACACgtacacatatgacattcattttgagtgacagatatgccaataacacttagtttgctttgtagtaatgacatagatttacttcatatttgtcagtcatagttacgagaaagtttaaagttatatccctttattaagtaatattaaaactgaaactgttaccgtgaatatactatttccagaatagtcagcgacaatcgatgtccaaattttataatcaattgtcgccaagtgctgctttcagcgatgatttttcgatagtcagtgactattgtaacaacact
gi|7 : tagtgttgtaaaatcggacaaaatttaccatcgattattgaatcaaatcggcagtacacaatcgatttataaaattgattatatgaacttccattttaaagttgcatattgattgaagtacacatatgacattcattttgagtgacagatatgccaataacacttagtttgctttgtagtaatgacatagatttacttcataTAGT-GTTGTAA-AATCGGAC--TAAATTTA-CCATCGATTATTTAATTGA-ATCGGCAGTA--------------TGAAATCGATTA--TTT-GAACTTCCT-----T-TTAAAGTTGCAT----ATTGAA--------TAACG-TACA-CGTGGAATA---TGGGT-ATA---GACATAGCATTACTTCATATT---TGTA-A-GTC--A-T---A-A-TT--A-CAACAA--A-GT-TAGGGTT-A-T-ATCCC-TA-----AAGTAA-TTTTAA-AAC-TGAAATT-GTTAC-GGTGAA-TTATAGTATTT-CTGGAA-TA-GTCAG-CGACAA-TCGATGTCCAA-AATTTATAATCG-ATTGTCG-CCAAGT-GCTG-CTTTC-AGCGACGATT-TTTC-GAT-AGTCGGC--GACTATCGTAACAACACt
gi|8 : TA-ATACCAGCTCCTC-TACGATGACGATAA-TCTG-ATATTCCTGAATAAAGGATGCTGTGTG--------CTGATGA--TACTAACTt
gi|9 : TA-ATACCAGCTTCCC-TATTGATATAGCAA-TC-G-ATCTTCCTGAATAGC-------GGATGTGGTGTATCTGATGA--TAC-------T-ACTGTAA-TATgtaataatgtagccaccgcctctctgattttttttcttttagggagggggggggggcagtcagaatttaaaaaaatcggagatagttatatttagctaagatgacatatgtatagtaccactgtctgtccatgtagactctaggtagccccgtgttacagtgctcagcctctcttgtcgcttgtacaacttttccatctggtaggcattccgtacattccagcagtcctctctgtgtaaatgag
4 sequences could not be aligned to this reference sequence:
Unaligned ( gi|14 ): AGATCTAGACTCCAGATAGTCCTGTGTTACAGTGCCCCGCCTCTCTTGTCACTTGTACAATTTTTCCATCTGGTGATCTGTACATTCCAGCATTACTCTCTGTGTAAATGA
Unaligned ( gi|15 ): TAGCTGTAATAATGTAGTCCCTGCCTCTTTGATTTTTTTTTAGGGAGGGAGTGGGGGGGGGGGCGAAATAAAAAAATCGGAGATGGTTATATTATTGCAGCT
Unaligned ( gi|16 ): AGCTGCAAATAATGTAGCCCCCTCCGATTTTTTTTATTCTGTCACGTTTACGGGAGAGAGAGAGAGAAAAAAAAAGGAGATGGCTACATTATTGCAACT
Unaligned ( gi|23 ): AGCTGCAATATGTAGCCCTCTCCGATTTTATAATTAAAAAAAGGAGAGGGCTACATTATTGCAGCC
Alignments
lowQualScore : 1 2222222 111 22 11111 222222222222222222 222 111 1 1 11 11 2 1 2222222 1 11 111 222 11 1 11 111111 1 111111 1 11 2 2 1 22 2222222 1 111111111111111111111 111 11 11 1 1 1 1 1 555555555555555555555 11 1111 11 111 11 2222222 22222 111 1111111 11111 11 77777777777777777777
lowQualScore : 0 0000000 0 6 0 8 777 5 11 11 8 66 4 4 55 44 4 4 3 11111 7 888888888888888888 0 555 5 0 5 5 1 8 6 666 8 8 8 8 777 0 0 0 8 55 3 11 8 22 0 8 0 8 99 6666666 8 6 8 11 8 8 8 8 1 8 0 8 8 444 0 8 000 88 88 11 0 3 5 11 8 88 8 8 8 7 6 6 555555 6 6 6 3 3 99 1 888888 8 0 0 11 0 5 0 8 0 0 0 8 8 55 3333333 0 999999999999999999999 77 444 33 5 11 8 0 8 6 8 0 0 8 0 5 8 0 4 4 1 000000000000000000000 1 66 0 0 5 5 55 6 6 0 1 4444 2 99 6 6 3 6 3 88 000 3 0 0 0 0 8 66 1 1111111 8 8 00000 777 5 5 66 5555555 5 99999 66 5 5 4 777 0 4 55555 4 4 00 66 11111111111111111111 4 4 4 5 1 5 4 4 4 4 4 4 4 4 4 66
lowQualScore : . ....... . . . . ... . .. .. . .. . . .. .. . . . ..... . .................. . ... . . . . . . . ... . . . . ... . . . . .. . .. . .. . . . . .. ....... . . . .. . . . . . . . . . ... . . ... .. .. .. . . . .. . .. . . . . . . ...... . . . . . .. . ...... . . . .. . . . . . . . . . .. ....... . ..................... .. ... .. . .. . . . . . . . . . . . . . . . ..................... . .. . . . . .. . . . . .... . .. . . . . . .. ... . . . . . . .. . ....... . . ..... ... . . .. ....... . ..... .. . . . ... . . ..... . . .. .. .................... . . . . . . . . . . . . . . . ..
lowQualScore : 0 0000000 8 0 6 0 888 6 00 44 0 99 4 4 11 66 4 4 9 11111 2 000000000000000000 7 999 7 7 7 7 0 0 0 666 0 8 0 0 888 6 6 8 0 00 8 00 0 00 0 8 6 0 88 0000000 0 0 0 00 0 0 0 0 4 0 6 0 0 000 8 0 888 88 88 44 0 2 6 44 0 88 0 0 0 3 7 7 555555 7 7 7 2 3 88 7 333333 0 6 8 00 8 6 0 0 4 8 0 0 0 88 6666666 6 888888888888888888888 22 444 22 0 00 0 6 0 0 0 6 0 0 0 0 9 1 4 4 7 444444444444444444444 0 11 2 1 0 0 88 7 7 7 0 7777 5 22 7 7 2 7 5 33 222 2 7 8 8 8 0 22 4 8888888 0 0 22222 999 0 0 99 4444444 0 11111 99 0 0 4 333 1 4 66666 4 4 66 11 99999999999999999999 4 0 4 7 4 7 4 4 4 4 4 4 4 4 4 99
consensus : CATTAAATC-AATTTAT--TT---TTTTAATGAACTAGATAAAAAC-ACACCGGAAACTTGATAGAAAGTTGGGAAATTTC-GATAAAT--AA-TC-TGA-GATTCC-TCCGACTCTT-ACCCCGGCTTT-----TATATCGTGA--CATA-T----------CACATGTCAG--CTATATGAAAGTGG-AGG-TAAGA-GTCAGGGGANTCTCAC-ATTAATCAATAAAGCGCGTTTAT-TAANAAGAG-ATGAAAGAAAAA-AATCAATTTCTCAGGATATATAGATAAAATTTCAGT-GCGAAATTGC--AA-GAACTGTATCTGCATCAAAGNCATTGTTTTTT-GANNAA-------T-TTT-TT-TTTCAG--CCCG-TGGTCTTGATATT-CCC-TCCA-TGAAGAC-GGTTG-TA-AATTA---TGATGTCGCTCGAGATATTGACACGCACACACA-CAGGATTGGACGCGAACAGGACGTGCAGGGTATGTAATAAATGTCACGGCTGATCGACACTTGTTATAGCTTTGACA-GTGAAAGATATTTGT-AGAT-T-ATATTTATATA-TAAAGTAAGGTTTGCAACAACA-GGGAGAT-AACTCTTGAT-CGAGGTACCTCCATGCTC-CTCCCACTTTATGA-CATCACA-ATGTACGTGGTCTATATAGGT----TTGTATCGGCAGGGAGAA-GTCATCATATTTTTTTCAA--TATTTATTTTAATACCG-CTGTCAGGTGTAAAGTCATTTGCCAGTAAAT-TGT-CCATTTCAGATTCAG---TTG-TTGATTTTTTTTGGTTCTTCATGTATA--TATCG-TATAAGACATTGAA-GTCCCTGCCTGGCTACTAA--GTATGTAGG-AACATGCGGAACTTCGTTTCGGCTATTATT-GT-AACGACTAGT-AGTGCTATGCAACTT-TCTTGATGTTATA-ATACCAGCTCCTC-TACGGTGATGGTAA-TCTG-ATATTCCTGAATAGA-------GTATG--------CTNATGA--TACCAACTAGT-GCTGTAA-AATCGGAC--AAAATTTA-CTATCGATTATTAAATTGA-ATCGGCAGTACACAGTCGATTT-ATAAAATCGATTA--TTT-GAACTTCCTCC-ATT-TCAAA--TGCGTG--GATCGAAAGGTTATGTAACGATGCATCATA-AATA-CCTAAGT-A-A---AAAA-AGTGT-ACG----GTC---TGTC-A-GTC--A-T---T-G-TC--A-CGAGAA--T-AT-AAGAGTT-A-T-GTCCC-TT-----A-GTAA-TATTAA-AAA-TGAAAC--GTTAC-G-TGAA-T-ATACTACTT-CCGGAA-TA-GTCAG-CGACAA-TCGATGTCCAA-AATTTATAATCG-ATTGTCG-CCAAGT-GCTG-CTTTC-AGCGACGATT-TTTC-GAT-AGTCGGC--GACTATCGTAACAACAC
Reference ( family-213 ) : CATTAAATC-AATTTAT--TT---TTTTAATGAACTAGATAAAAAC-ACACCGGAAACTTGATAGAAAGTTGGGAAATTTC-GATAAAT--AA-TC-TGA-GATTCC-TCCGACTCTT-ACCCCGGCTTT-----TATATCGTGA--CATA-T----------CACATGTCAG--CTATATGAAAGTGG-AGG-TAAGA-GTCAGGGGANTCTCAC-ATTAATCAATAAAGCGCGTTTAT-TAANAAGAG-ATGAAAGAAAAA-AATCAATTTCTCAGGATATATAGATAAAATTTCAGT-GCGAAATTGC--AA-GAACTGTATCTGCATCAAAGNCATTGTTTTTT-GANNAA-------T-TTT-TT-TTTCAG--CCCG-TGGTCTTGATATT-CCC-TCCA-TGAAGAC-GGTTG-TA-AATTA---TGATGTCGCTCGAGATATTGACACGCACACACA-CAGGATTGGACGCGAACAGGACGTGCAGGGTATGTAATAAATGTCACGGCTGATCGACACTTGTTATAGCTTTGACA-GTGAAAGATATTTGT-AGAT-T-ATATTTATATA-TAAAGTAAGGTTTGCAACAACA-GGGAGAT-AACTCTTGAT-CGAGGTACCTCCATGCTC-CTCCCACTTTATGA-CATCACA-ATGTACGTGGTCTATATAGGT----TTGTATCGGCAGGGAGAA-GTCATCATATTTTTTTCAA--TATTTATTTTAATACCG-CTGTCAGGTGTAAAGTCATTTGCCAGTAAAT-TGT-CCATTTCAGATTCAG---TTG-TTGATTTTTTTTGGTTCTTCATGTATA--TATCG-TATAAGACATTGAA-GTCCCTGCCTGGCTACTAA--GTATGTAGG-AACATGCGGAACTTCGTTTCGGCTATTATT-GT-AACGACTAGT-AGTGCTATGCAACTT-TCTTGATGTTATA-ATACCAGCTCCTC-TACGGTGATGGTAA-TCTG-ATATTCCTGAATAGA-------GTATG--------CTNATGA--TACCAACTAGT-GCTGTAA-AATCGGAC--AAAATTTA-CTATCGATTATTAAATTGA-ATCGGCAGTACACAGTCGATTT-ATAAAATCGATTA--TTT-GAACTTCCTCC-ATT-TCAAA--TGCGTG--GATCGAAAGGTTATGTAACGATGCATCATA-AATA-CCTAAGT-A-A---AAAA-AGTGT-ACG----GTC---TGTC-A-GTC--A-T---T-G-TC--A-CGAGAA--T-AT-AAGAGTT-A-T-GTCCC-TT-----A-GTAA-TATTAA-AAA-TGAAAC--GTTAC-G-TGAA-T-ATACTACTT-CCGGAA-TA-GTCAG-CGACAA-TCGATGTCCAA-AATTTATAATCG-ATTGTCG-CCAAGT-GCTG-CTTTC-AGCGACGATT-TTTC-GAT-AGTCGGC--GACTATCGTAACAACAC
gi|1 : CATTAAATC-AATTTATAGTTACATTTTAATGAACTAGATCAAAAC-ACACC------TTGATAGAA-GTTGGGAAATGTC-GATAAAC--AG-TC-TGA-GATTCC-TCCGACTCTT-ACCCCGGCTTT-----TATATCATGA--CATA-T----------CACATGTCA---CTATATGAAAGTGG-AGG-TAAAA-ATCAGAGGAGTCTCAT-ATTAATCAATAAAGCGCG---GT-TAAGAAGAG-ATGAAAGAAAAA-AAGTAATTTCTCAGGATATATAGATAAAATTTCAGT-G--AAATTGC--AA-GAACTGTATCTG-ATCAAAAGCATTATTTTTT-GACCAA-------T-TTT-TT-TTTCAGATCCCG-TGGTCTTGATATT-CCC-TTCA-TTAAGAC-GGTGG-TA-AATTAAAATGATGGTGCTCGAGATATTGACACGCACACACA-CAGGATTGGACGCGAACAGGACGTGCAGGGTATGTA-TAAATGTCACG-CTGATCGACACTTGT-ATAGCTTTGACA-GTGAAAGATATTTGT-AGAT-T-ATATTTATATA-TAAAGTAAGGTTTGCAACAACA-GGGAGAT-AACTCTTGGT-CGAGGTAACTCCATGCTCGCTCCCACTTTATGAACATC-CA-ATGTACCAGGCCTATATAG------TTGTATCGG-AGGGAGAACGTCATACTATTTTTTTCAAAATATTTATTT-AATACCGGCTGTCAGTTGTAAAGTCATTTGC-AGTAAAT-TGT-CCATTTCAGATTCAGAAGTTG-TTGATTTTTTT-GA-----CATGTATA--TATCG-TATAAGACATTGAA-GTCCCTGCCTGGATACTAA--GTATGTAGG-AACATGCCGAACTTTGTTTCGGCTATTGTC-GTTAACTACTAGT-AGTGCTATGCAACTT-TCTTGATGTTATA-ATACCAGCTCCTC-TACGGTGATGGTAA-TCTG-ATATTCCTGAATAGAC------TTATG---------TAATAA--TACCAACTAGT-ACTGTAA-AATTGGAC--AAAATTTA-CTATCGATTATCAAATTGA-ATTTGCAGTACACAGTCGA-TT-ATAAAATCCATTA--TTT-GAACTTCCTCC-ATT-TCTGA--TGCGTG--GATCAAAAGGTTATGTAACGATGCATCATA-AATA-GTTACGT-A-AAACAAAA-AATGT-ACC----GTC---TGTC-A-GTC--A-T---T-G-TC--A-CAAGAA--T-AT-AAGAGTT-A-T-GTCCC-GT-----A-GTAA-TATTAA-CAA-TGAA-----TT--------A-T-ATACTACTT-CTAGAA-TA-GTCAG---------TGATGTCCAA-AATTTATAATCG-ATTGTCG-CCAAGT-ACTG-TTTTC-AGCGACGATT-TT------------------CTATCGTAACAACAC
gi|10 : ---TGTCGA-GTC--AGC---T-GATC--C-AGAGAA--TCAT-TAGAGTT-A-CAGTCCCCTT-----A-G-AA-TATAAA-AAACTGAAACCCGTTACAG-TGAA-TTATACTACTTTCCGGAAATACGTCGGGTGACAA-TTGATGTTCAACAATTTATAATTGCATTGTGGGCCAAGTTGCTG-CTTTC-AACGACAATT-TTTC-GATGAGT
gi|11 : TC-G-ATC--A-T---TTG-T---A-TGAGAA--T-ATTAAGAGTTTA-A-GTTCC-TTC----A-GTAA-TTATAA-AAC-TGAACC--GTTCA-T-TGAA---ATA-TACTG-TCGGAA-AA-GACAG-CG-CAA-TCAATGTTCAA-ACTTTATAATCG-A-TGTCG-CCAAGT-G-TG-CTTTTAAGCAACGA-T-TTTC-GAT-AGTCAGCTAGACTATCGT-ACAACgagggataatctctaac
gi|12 : tTT-A-A-GTCCC-TT-----A-GTAA-CATAAA-AAC-TGAAACC-GTTACAG-TGAA-TTATACTATAT-CCGGAA-TA-GTCAG-CGACAAATTGATGTTCAA-AATTTATAATCG-ATTGTCG-CCAAGT-GCTG-CTTTC-AGCGATGATT-TTTC-GAT-AGTCGGC--GACTATCATAACAAcactaaatt
gi|13 : A-TT-GTTAG-CGACAA-TCGATGTTCAA-AATTTATAATCG-ATTGTCG-CCAAGT-GCTG-TTTTC-AGCG-CGATT-ATTC-GAT-AGTCGGC--GACTATCGTAACAACAgtacacta
gi|17 : gtatgagtgctggtc-TC-TGA-GATTGC-TCAG-CTCT-------GTCTCT-----TACATT-TGAGGTACA-TGGGAGACCCACACATGT--A--TTATATAAAAGTGG-GGGGTAAGA-GTCAGAGGAATCTCA
gi|18 : GATGTC----AATTTATAATCG-ATTGTCG-CCAAGT-GCTGTTTTTC-AGCGACGATTATTTCTGAT-AATCGGC--GAATATCATAACAACACga
gi|19 : --AA-TC-TGA-GATTCT-TCTGACTCTT-ACCCCTGCTTT------------TGA-----A-T----------TACATG---------TATGACA-TAC-AGG-GAAGA-GTCAGt
gi|2 : CATTAAATC-AATTTAT--TC---TTTTAATGAACAAGATACAAACCACACTG-AAACTTGATAGA--GTTGGGAAATT-C-GATAAAT--AAATC-TGGCGATCCA-TCTGACTCTT-ACCC-GGCTTT-----TATATCACGAA-CATAAT----------CACATGTCAGTACTATATGAAAGTGG-A-G-TAAAACGTCAGGGGATTCTCACGATTAATCAAT-AAGCACGTTTAT-TAATAAAAGAATGAAAGAAAAA-AATCAATTTCTCATG-TATATAGATAAAATTTCAGT-GCGAAATTGCCAAG-GAACTGTTGCTGCATCAAAGCTATTG-TTTTT-GACAAT-------T-TTTGTTGTTTCAG--CCCGTTGGTCTTGATATT-CCCATCCA-TGAAGAC-GGTTGTTA-GATTA---TGATGTCGCTCGAGATATTGACACGCACACACATCAGGATTGGA--CGAACAG--CGTGCAGGTAATGTAATAAATGTCACGGCTGAT-GCCACTTGTTATAGCTTTGACC-GTGAAAGATATTTGTAAGAT-TAATATTTATATA-TAAAGTAAGGTTTGC--TAACACGGGAGAT-AACTTT--AT-CGAGGTA-CTCCATGCTC-CTCCCACTTTATGA-CATCACAGATGTACATGGTCTATATAGGT----TTGTATCGGCAGGGAGAA-GTCATCATA-TTTTTTCAA--TATTTATTTTAATA-CG-C-GTCAGGTGTAAAGTCATTTGCCAGTAAAT-TGT-CCATTTCAG--TCAG---T---TTGATTTTTTTTGGTTCTTCATGTATA--TATCATTATAAAGAATTG-A-GTCCCT--CTGGCTACTAA--GTATGTAGGCAACATGCGGAACTTCG-TTCGGCTATTATT-GT-AACGA-TAGTAAGTGC-AT-CAACTTGTCTTGAT-TTATGCATACCACTTCCTCTTACAGTGATGGTAATTCTG-ATATTCCTG-ATAGA-------G-ATG--------CTTATAA--TA-CAACTAGT-GCTGTAA-AATCGGACAAAAAATTTACCTATCGATTATTAAATTGACATTGGCAGTACACAGTCGATTTAATAAAATCGATTAATTTT-GAACTTCCTCC-A-T-TCAAA--TGCGTG--GCTCAAAAGGTTATGTAACGATGCATCATA-AATT-CCTAAATAA-A---AAAA-AGTGT-AAG----GTCTCATGTC-A-GTCAAA-G---T-G-TCCTA-CAAGAA--T-AT-AAGAGTT-ATT-GT-CC-TT-----A-GTAAGTATTAACCAA-TGG--------------GAATT-ATACTACTT-CTAGAA-TA-aataaaagccatatta
gi|20 : tATGTCCAA-AATTTATAATCG-ATTGTCG-CCAAGT-GCTG-TTTTC-AGCGACGATT-TTTC-GAT-AATCGGC--GAATATCATAACAACAC
gi|21 : TGTACCAACA-GGGAGAT-AACTCTTGAT-----GCACCTCCGTACAC-TTCCCACTTTAT-----------ATATATTTTG--TATACATGT----TTGTAt
gi|22 : TA-ATACCAGCTCCTC-TATGATAATAGCAA-TCTG-ATCTTCCTGAATAGA-------GGATGTGGTGTA-CTGATGA--TAC
gi|24 : TACCAACTCCTC-TATGATGATGGTAA-TTTA-ATCTTCCTGAATAGA-------GTATA---------TTATAA--TACCAACT
gi|25 : T--AA-TC-CGA-GATTTG-TCTGACTCTA-ACCCCCGCTTTAATTTTATATTGTGA--CGT
gi|26 : T--AA-TC-CGA-GATTCC-CCAGACTCTTAACCCCCGCTTT-----TATATTGTGA--C
gi|3 : ccAATCCAATTTAA--TT---CTTTAATGAAC-AGATACAAAC-ACACATGAA-CTTGATAGA--GTTGGGAAATTTCTGATATATGAAA-TCATGC-GA--CCATCTGACTCTT-ACCC-GGCTTT-----TAT-TCAGGA--CATA-T----------CACATGTCAG--ACATATGAAAGTGGCACG-TCAAC-GTCAGGGGATTCTCAC-ATTAATCAATAAAGCACAGTTATATAA-AAGA--ATGAAAGAAAAACAATCAATTTCTCAAT-TATA-AGATAAAATT-CAGT-GCGAA--TGC--AAAGAACTGTTGCTGCATCAAAG-CATTGTCTTTT-GAGGAAACAGATTT-TTT-TT-TTTCAG--CCCG-TGGTCTTGATATTTCCC-TCCAATGAATACTGGTTG-TACAATTA---TGATGTCGC-CGA-ATAATGACACGCACACACA-CAGGATTGA---CGAACAGA--GTG--AGGTATGTAATAAATGTCACGGCTGATTG---CCTGTTATAGCTTTGACACGTTGAAGATATTT-T--GATCT-ATATATATATATTAAAGTAAGGTTTGC-ATAACA-GGGAGATCAACTTT--ATACGAGGTACCTCCATGCTC-TCTCCACTTTATGA-CATCACA-ATGTACGTGGTCTATATAGG-----TTGTATC-GCAGG--GAA-GTCATAATATTTTCTTCAA--TATTTATTTTAATA-CG-C-GTCAGGTGT-AAGTCATTTGCCA-TAAATGTGTCCCATTTCAA--TCA----TTGTTTGATTTTTTTTGGTTCTTCATGTTTAACTATC--TATAA---ATCGAATGTCC---TCT-GCTACTAACCGTATGTGGC-AACATGGGAAACTTCG-TTCAGCTATTATTCGTCAACGACTATA-AGTGC-AT-CAACTT-TCTTGAT-TTATA-ATACCAGTTCCTCTTACAGT-ATGGTAA-TTCGAATATTCCTGAATAGG---------ATG--------CTTATAAATCACCAACTAGTAGCTGTAA-AATCGGACA-AAAATTTA-CTATCGATTATTAAATTGA-ATTGGC--TATAAAGTCGATTTAATAAA--C-ATTA--TTTAGAACTTCCTCCGATTATC-AA--TGTGTG--G-TCAAAAGGTTATGTAAC-ATG-ATCATA-AATATCCTAACT---A---AAAA-AGTGT-ACA----GTC-----TC-ATATC--G-TATGT-G-TC--CTCAAGAA--T-AT-AAGA-TT-A-T--TGCC-TT-----A-GTAT-TATTAACCAA-TGG--------------GAATT-ATACTACTT-CTAGAA-TA-gaa
gi|4 : tcatctacCATTAAATC-AATTTAT--AT---TTT-AATGAACTAGATAAAAAC-ACACTAGAAACTTGATAGAAAGTTGGGAAATTTC-GATAAAT--AA-TC-TGC-GATCCA-TCTGACTCTT-ACCCCGGCTTT-----TATATCATGA--CATA-T----------CACATGTCAGTACTATATGAAAGTGG-AGG-TAAAA-GTCAGGGGATTCTCAC-ATTAATCAATAAAGCACGTTTAT-TAATAAAAG-ATGAAAGAAAAA-AAT-AATTTCTCAGGATATATAGATAAAATTTCAGT-G-GAAATTGC--AA-GAACTGTATCTG-ATCAAAAGCATTG-TTTTT-GA-CAA-------T-TTT-TT-TTTCAG--CCCG-TGGTCTTGATATT-CCA-TCCA-TAAAGAC-GGTTG-TT-AATTA---TGATGTCGCTCGAGATATTGACACGCACACACA-CAGGATTGGA--CGAACAGGACGTGCA-GGTATGT-ATAAATGTCAC-GCTGATCGACACTTG-TATAGCTTTGACA-GTGAAAGATATTTGT-AGAT-T-ATATTTATATA-TAAAGTAAGGTTTGCAACAACA-GGGAGA----------------------TCCATGCTC-CTCCCACTTTATGA-CATCACAGATGTACATGGTCTATATAGGT----TTGTATCGGCAGGGAGAA-GTCATCATA-TTTTTTCAA--TATTTATTTTAATA-CG-C-GTCAGGTGTAAAGTCATTTGCCAGTAAAT-TGT-CCATTTCAG--TCAG---T---TTGATTTTTTTTGGT------TG---------------AAGTCCCTG------CCTG----GCTACTAA--GTATGTAGG-AACATGCGGAACTTCGTTTCGGCTATTATT-GT-AACGACTAGT-AGTGCTATGCAACTT-TCTTGATGTTATG-ATACCAGCTCCTC-TACAGTGATGGTAA-TCTG-ATATTCCTGAATAGA-------GTATG---------TTATAA--TACCAACTAGT-GCTGTAA-AATCGGAC--AAAATTTA-CTATCGATTATTAAATTGA-ATTGGCAGTACACAGTCGA-TT-ATAAAATCGATTA--TTT-GAACTTCCTCC-ATT-TCAAA--TGCGTG--GATCAAAAGGTTATGTAACGATGCATCATA-AATA-TCTAAAT-A-A---AAAA-AGTGT-AAG----GTCTA-TGTC-A-GTC--A-A---T-G-TC--A-CAAGAA--T-AT-AAGAGTT-A-T-GTCCC-TT-----A-GTAG-TATTAA-CAA-TGAA-----T-----------T-ATACTACTT-CTAGAA-T
gi|5 : t---TTTTAATGAACTAGATAAAAAC-ACACCAGAAACTAGATAGAAAGTTGGGAAATGTC-GATAAAC--AA-TC-TGC-AATTCC-TCCAACTCTT-ACCCCGGCTTT-----TATATCAT-----------------------ATGTCA---CTATATAAAAGTGG-AGG-TAAGA-GTCAGAGGAATCTCAT-ATTAATCAATTAAGCGCG---AT-TAAGAAGAG-ACGAAAGAAAAA-A--TAATTTCTCAGAATATA--AATAAAATTTTCGTAGC--AGTTGC--AA-GAACTGTATTTG-ATCAGAGTTATTGTTTTTGAGAAAAA-------TATTTATT-TTTCAG--CCCG-TGGTCTTGATATT-CCC-TCCA-TAAAGAC-GGTGG-TA-AATTA---TGATGTTGCTCGAGATATTGACACGCACACACA-CAGGATTGGACG--AACGGGACGTGC-GGGTATGTA-TAAATGTCGCG-CTGGTCAACGCTTGT-ATAGCTTTGACA-GTGAAAGTTATTTGT-AGAT-T-ATATTTATGTA-TAAAGTAAGGTTTGCAACAACA-GGGAGAT-AACTCTTGAT-CGAGGTACCTCCATGCTC-CTCCCACTTTATGA-CATCACA-ATGTACA-GATCTATATACATGTAGTTGTATCG-CAGGGAGAA---CGTCATATTTTCT-CAA--TATTTA-----GTACCG-CTATCAATTGTAAAGTCATTTGC-AGAAAGA-TGT-CCATTTGAGATTCAG---TTG-TTGATTCTTTT-GGTTCT------ATA--TATTG-TATAAGACATTGAA-GTCCCTGCCTGGCCACTAA--ATATATAGG-AATATGCGGAACTTCGTTTCGGCTATTGTT-GT-AACGACTAGT-AGTGCTATGCAACTT-TCTTGACGTTATA-ATACCAGCTCCTC-TACGATGATGCTAA-TCTC-ATCTCCCTGAGTAGAGGGTGTGGTGTG--------CTGATGA--TACTA-------GCTGTAATAATtttggagagagattggttcccaccaagatatattcgat
gi|6 : tataTAGT-GTTGTAA-AATCGGAC--AAAATTTA-CCATCGATTATTGAATCAA-ATCGGCAGTACACAATCGATTT-ATAAAATTGATTA--TAT-GAACT---TCC-ATT-TTAAAGTTGCATATTGATTGAAgtagccccccgcttttcttgattttta
gi|6 : TT---TGTC-A-GTC--A-T---A-G-TT--A-CGAGAAAGT-TT-AA-AGTT-A-T-ATCCC-TTTATTAA-GTAA-TATTAA-AAC-TGAAACT-GTTACCG-TGAA-T-ATACTATTT-CCAGAA-TA-GTCAG-CGACAA-TCGATGTCCAA-ATTTTATAATCA-ATTGTCG-CCAAGT-GCTG-CTTTC-AGCGATGATT-TTTC-GAT-AGTCAGT--GACTATTGTAACAACACgtacacatatgacattcattttgagtgacagatatgccaataacacttagtttgctttgtagtaatgacatagatttacttcatatttgtcagtcatagttacgagaaagtttaaagttatatccctttattaagtaatattaaaactgaaactgttaccgtgaatatactatttccagaatagtcagcgacaatcgatgtccaaattttataatcaattgtcgccaagtgctgctttcagcgatgatttttcgatagtcagtgactattgtaacaacact
gi|7 : tagtgttgtaaaatcggacaaaatttaccatcgattattgaatcaaatcggcagtacacaatcgatttataaaattgattatatgaacttccattttaaagttgcatattgattgaagtacacatatgacattcattttgagtgacagatatgccaataacacttagtttgctttgtagtaatgacatagatttacttcataTAGT-GTTGTAA-AATCGGAC--TAAATTTA-CCATCGATTATTTAATTGA-ATCGGCAGTA--------------TGAAATCGATTA--TTT-GAACTTCCT-----T-TTAAAGTTGCAT----ATTGAA--------TAACG-TACA-CGTGGAATA---TGGGT-ATA---GACATAGCATTACTTCATATT---TGTA-A-GTC--A-T---A-A-TT--A-CAACAA--A-GT-TAGGGTT-A-T-ATCCC-TA-----AAGTAA-TTTTAA-AAC-TGAAATT-GTTAC-GGTGAA-TTATAGTATTT-CTGGAA-TA-GTCAG-CGACAA-TCGATGTCCAA-AATTTATAATCG-ATTGTCG-CCAAGT-GCTG-CTTTC-AGCGACGATT-TTTC-GAT-AGTCGGC--GACTATCGTAACAACACt
gi|8 : TA-ATACCAGCTCCTC-TACGATGACGATAA-TCTG-ATATTCCTGAATAAAGGATGCTGTGTG--------CTGATGA--TACTAACTt
gi|9 : TA-ATACCAGCTTCCC-TATTGATATAGCAA-TC-G-ATCTTCCTGAATAGC-------GGATGTGGTGTATCTGATGA--TAC-------T-ACTGTAA-TATgtaataatgtagccaccgcctctctgattttttttcttttagggagggggggggggcagtcagaatttaaaaaaatcggagatagttatatttagctaagatgacatatgtatagtaccactgtctgtccatgtagactctaggtagccccgtgttacagtgctcagcctctcttgtcgcttgtacaacttttccatctggtaggcattccgtacattccagcagtcctctctgtgtaaatgag
blockSeqs : C TC A C ATG A AA TT T GA A A GC CA A A C AATTT A GGTACATGGGAGACCCA GTA C G C A G A TTT A T A C ATC A T A CG A CA A TG C C T A CA ACAGATT A G G . T T A A G T T C . T ACG GA AG AA G T C TT C AA C A T A C C TGATC C . . A G AT T ATGTAG . T . T C . T C G C AT TTGT T TTCTTCATGTATATATCAT AG AAT GC G CC C T C C A T G G G C T T A A GGATGTGGTGTATC T AT A T AA C C C TTTA G AT A G T A A GT ATT C G TC A AAA T T TTCAT TCA G T AA TATGT A CCTA AG C T T CA C TATTA A G CC AC AACCCGTTACAGTGAATT T A C G A A C C G T T A A T G TA
blockSeqs : . TT T . TAG A AA TT . . . . A C T . C . G ACATAAT GTA . . . T . A GTT . T . . ATC A T . CG A . . TG C G T . GG . . A . . . . . . G . . . . . A GA A AA G C A TT . A . . . A . . TGAT C . . A G TT T GT . T . T . . . C . . . TTG T TTCTTCATGTTTAACTATC GT AA T G . . T . . . T G . G . T . . C GGATGTGGTGTAC G . . . A . . T TTTA G . . . T . A GT G A . C C ATA . . G TA . . . GCT . CCT . . . . TT . C . . CC C AACCGTTACAGTGAATT . . . . A . . . . . . . . . . .
blockSeqs : . AT T . CAG A . GT . . . . A T T . C . G CATAT A . . . T . T TTT . G . . AT . . . G G . . AT . T . . AA . . . . . . . . . A . . . . . A A A A G C A T . A . . . A . . ATAC C . . A . GT T GT . . . T . . . C . . . T T TTCTATATATTG GA A G . . . . . . . . . . . . . . . C GGGTGTGGTGTGC T . . . . . . C TTT G . . . T . A . G A . T A AA . . A . . . . TTT . CC . . . . A . . . . A C AATTGTTACGGTGAATT . . . . A . . . . . . . . . . .
blockSeqs : . . TG . . T . . . . A A T . C . A CATAT G . . . T . . . . . . . T . . . C . . . AT . . . . C . . . . . . . . . A . . . . . . . G A . . . T . . . . . . . . ATC . . . A . AT T GT . . . . . . . . . . . T . TTG . . . . . . . . . . . . . . . . . . A GGATGCTGTGTGC T . . . . . . C TT G . . . . . A . G A . . G A . . G . . . . GT . CA . . . . A . . . . A A AACTGTTACCGTGAAT . . . . A . . . . . . . . . . .
blockSeqs : . . . A G A . C . A AT . . . . A . . . . . . . . . A . G . . . . A GATGC T . . . . . . . . . . . . . . . . . . . . . . AT . TA . . . . T . . . . A A ACCGTTCATTGAA . . . . A . . . . . . . . . . .
blockSeqs : . . . C C T . . . A . . . . . . . . . C GTATA G . . . . . . . TA . TA . . . . T . . . . C A GAATT . . . . . . . . . . . . . . . .
blockSeqs : . . . C A T . . . . . . . . A GTATG G . . . . . . TA . A . . . . T . . . . A C GAATT . . . . . . . . . . . . .
blockSeqs : . . C C C . . . . . . . C ATGC G . . T . . . . A C ATT . . . . . . . . . . . .
blockSeqs : .
blockSeqCons : NAG ** TTT CG ** *** A** A* A* T* ATC*** GT**** ** ** T****** TTCTGTATATC********** A** ** GGATGGTGTGC********** TTT* AA*****
originalCons : CATTAAATC-AATTTAT--TT---TTTTAATGAACTAGATAAAAAC-ACACCGGAAACTTGATAGAAAGTTGGGAAATTTC-GATAAAT--AA-TC-TGA-GATTCC-TCCGACTCTT-ACCCCGGCTTT-----TATATCGTGA--CATA-T----------CACATGTCAG--CTATATGAAAGTGG-AGG-TAAGA-GTCAGGGGANTCTCAC-ATTAATCAATAAAGCGCGTTTAT-TAANAAGAG-ATGAAAGAAAAA-AATCAATTTCTCAGGATATATAGATAAAATTTCAGT-GCGAAATTGC--AA-GAACTGTATCTGCATCAAAGNCATTGTTTTTT-GANNAA-------T-TTT-TT-TTTCAG--CCCG-TGGTCTTGATATT-CCC-TCCA-TGAAGAC-GGTTG-TA-AATTA---TGATGTCGCTCGAGATATTGACACGCACACACA-CAGGATTGGACGCGAACAGGACGTGCAGGGTATGTAATAAATGTCACGGCTGATCGACACTTGTTATAGCTTTGACA-GTGAAAGATATTTGT-AGAT-T-ATATTTATATA-TAAAGTAAGGTTTGCAACAACA-GGGAGAT-AACTCTTGAT-CGAGGTACCTCCATGCTC-CTCCCACTTTATGA-CATCACA-ATGTACGTGGTCTATATAGGT----TTGTATCGGCAGGGAGAA-GTCATCATATTTTTTTCAA--TATTTATTTTAATACCG-CTGTCAGGTGTAAAGTCATTTGCCAGTAAAT-TGT-CCATTTCAGATTCAG---TTG-TTGATTTTTTTTGGTTCTTCATGTATA--TATCG-TATAAGACATTGAA-GTCCCTGCCTGGCTACTAA--GTATGTAGG-AACATGCGGAACTTCGTTTCGGCTATTATT-GT-AACGACTAGT-AGTGCTATGCAACTT-TCTTGATGTTATA-ATACCAGCTCCTC-TACGGTGATGGTAA-TCTG-ATATTCCTGAATAGA-------GTATG--------CTNATGA--TACCAACTAGT-GCTGTAA-AATCGGAC--AAAATTTA-CTATCGATTATTAAATTGA-ATCGGCAGTACACAGTCGATTT-ATAAAATCGATTA--TTT-GAACTTCCTCC-ATT-TCAAA--TGCGTG--GATCGAAAGGTTATGTAACGATGCATCATA-AATA-CCTAAGT-A-A---AAAA-AGTGT-ACG----GTC---TGTC-A-GTC--A-T---T-G-TC--A-CGAGAA--T-AT-AAGAGTT-A-T-GTCCC-TT-----A-GTAA-TATTAA-AAA-TGAAAC--GTTAC-G-TGAA-T-ATACTACTT-CCGGAA-TA-GTCAG-CGACAA-TCGATGTCCAA-AATTTATAATCG-ATTGTCG-CCAAGT-GCTG-CTTTC-AGCGACGATT-TTTC-GAT-AGTCGGC--GACTATCGTAACAACAC
finalCons : CATTAAATC-AATTTAT--TT---TTTTAATGAACTAGATAAAAAC-ACACNAGAAACTTGATAGA--GTTGGGAAATTTC-GATAAAT--AA-TC-TGA-GATTCC-TCCGACTCTT-ACCCCGGCTTT-----TATATCGTGA--CATA-T----------CACATGTCAG--CTATATGAAAGTGG-AGG-TAAGA-GTCAGGGGANTCTCAC-ATTAATCAATAAAGCGCGTTTAT-TAANAAGAG-ATGAAAGAAAAA-AATCAATTTCTCAGGATATATAGATAAAATTTCAGT-GCGAAATTGC--AA-GAACTGTATCTGCATCAAAGNCATTGTTTTTT-GANNAA-------T-TTT-TT-TTTCAG--CCCG-TGGTCTTGATATT-CCC-TCCA-TGAAGAC-GGTTG-TA-AATTA---TGATGTCGCTCGAGATATTGACACGCACACACA-CAGGATTGGA--CGAACAGGACGTGCA-GGTATGTA-TAAATGTCACGGCTGATCGACACTTGT-ATAGCTTTGACA-GTGAAAGATATTTGT-AGAT-T-ATATTTATATA-TAAAGTAAGGTTTGCAACAACA-GGGAGAT-AACTCTATC---GAGGTACCTCCATGCTC-CTCCCACTTTATGA-CATCACA-ATGTACGTGGTCTATATAGGT----TTGTATCGGCAGGGAGAA-GTCATCATATTTTTTTCAA--TATTTATTTTAATACCG-CTGTCAGGTGTAAAGTCATTTGCCAGTAAAT-TGT-CCATTTCAG--TCAGT------TTGATTTTTTTTGGTTCTGTATATC----------TATAAGACATTGA--GTCCCT--CTGGCTACTAA--GTATGTAGG-AACATGCGGAACTTCGTTTCGGCTATTATT-GT-AACGACTAGT-AGTGCTATGCAACTT-TCTTGATGTTATA-ATACCAGCTCCTC-TACGGTGATGGTAA-TCTG-ATATTCCTGAATAGAGGATGGTGTGC----------TNATGA--TACCAACTAGT-GCTGTAA-AATCGGAC--AAAATTTA-CTATCGATTATTAAATTGA-ATCGGCAGTACACAGTCGATTT-ATAAAATCGATTA--TTT-GAACTTCCTCC-ATT-TCAAA--TGCGTG--GATCGAAAGGTTATGTAACGATGCATCATA-AATA-CCTAAGTAA-----AAAA-AGTGT-ACG----GTC---TGTC-A-GTC--A-T---T-G-TC--A-CGAGAA--T-AT-AAGAGTT-A-T-GTCCC-TT-----A-GTAA-TATTAA-AAA-TGAAAC--GTTAC-G-TGAA-T-ATACTACTT-CCGGAA-TA-GTCAG-CGACAA-TCGATGTCCAA-AATTTATAATCG-ATTGTCG-CCAAGT-GCTG-CTTTC-AGCGACGATT-TTTC-GAT-AGTCGGC--GACTATCGTAACAACAC
4 sequences could not be aligned to this reference sequence:
Unaligned ( gi|14 ): AGATCTAGACTCCAGATAGTCCTGTGTTACAGTGCCCCGCCTCTCTTGTCACTTGTACAATTTTTCCATCTGGTGATCTGTACATTCCAGCATTACTCTCTGTGTAAATGA
Unaligned ( gi|15 ): TAGCTGTAATAATGTAGTCCCTGCCTCTTTGATTTTTTTTTAGGGAGGGAGTGGGGGGGGGGGCGAAATAAAAAAATCGGAGATGGTTATATTATTGCAGCT
Unaligned ( gi|16 ): AGCTGCAAATAATGTAGCCCCCTCCGATTTTTTTTATTCTGTCACGTTTACGGGAGAGAGAGAGAGAAAAAAAAAGGAGATGGCTACATTATTGCAACT
Unaligned ( gi|23 ): AGCTGCAATATGTAGCCCTCTCCGATTTTATAATTAAAAAAAGGAGAGGGCTACATTATTGCAGCC
Alignments
lowQualScore : 1 2222222 11 22 11111 222222222222222222 222 111 1 1 111 11 2 222222222222222 1 11 111 111 11 1 2 1 222222 1 111111 1 1 11 111 2 1 22 111111 22 1 66666666666666666666666666 111 1 33 11 1 1 1 1 44444444444444444 11 1111 11 111 11 2222222 22222 111 1111111 11111 11 77777777777777777777
lowQualScore : 0 0000000 0 6 0 8 99 5 8 22 11 8 66 4 4 55 44 4 4 3 11111 7 888888888888888888 0 555 5 5 5 1 8 0 666 8 8 8 8 777 0 0 0 333 3 11 8 22 0 8 777777777777777 8 6 8 11 8 8 8 8 1 8 0 222 444 0 8 11 88 8 8 6 0 3 5 6 8 88 8 8 8 7 6 6 444444 2 6 6 3 3 99 1 888888 0 8 0 0 11 0 5 888 0 0 0 8 8 22 666666 22 0 8 99999999999999999999999999 222 6 8 33 11 8 0 8 8 8 8 0 0 8 0 5 8 0 4 4 1 22222222222222222 1 66 0 0 5 5 55 6 6 0 1 4444 2 99 6 6 3 6 3 88 000 3 0 0 0 0 8 66 1 1111111 8 8 00000 777 5 5 66 5555555 5 99999 66 5 5 4 777 0 4 55555 4 4 00 66 11111111111111111111 4 4 4 5 1 5 4 4 4 4 4 4 4 4 4 66
lowQualScore : . ....... . . . . .. . . .. .. . .. . . .. .. . . . ..... . .................. . ... . . . . . . ... . . . . ... . . . ... . .. . .. . . ............... . . . .. . . . . . . . ... ... . . .. .. . . . . . . . . .. . . . . . . ...... . . . . . .. . ...... . . . . .. . . ... . . . . . .. ...... .. . . .......................... ... . . .. .. . . . . . . . . . . . . . . . . ................. . .. . . . . .. . . . . .... . .. . . . . . .. ... . . . . . . .. . ....... . . ..... ... . . .. ....... . ..... .. . . . ... . . ..... . . .. .. .................... . . . . . . . . . . . . . . . ..
lowQualScore : 0 0000000 8 0 6 0 66 6 0 00 44 0 99 4 4 11 66 4 4 9 11111 2 000000000000000000 7 999 7 7 7 0 0 8 666 0 8 0 0 888 6 6 8 000 8 00 0 00 0 8 444444444444444 0 0 0 00 0 0 0 0 4 0 6 222 000 8 0 00 88 0 0 0 0 2 6 0 0 88 0 0 0 2 7 7 777777 5 7 7 2 3 88 7 333333 0 0 6 8 00 8 6 000 4 8 0 0 0 00 000000 00 6 0 66666666666666666666666666 000 0 0 00 00 0 6 0 0 0 0 6 0 0 0 0 9 1 4 4 7 33333333333333333 0 11 2 1 0 0 88 7 7 7 0 7777 5 22 7 7 2 7 5 33 222 2 7 8 8 8 0 22 4 8888888 0 0 22222 999 0 0 99 4444444 0 11111 99 0 0 4 333 1 4 66666 4 4 66 11 99999999999999999999 4 0 4 7 4 7 4 4 4 4 4 4 4 4 4 99
consensus : CATTAAATC-AATTTAT--TT---TTTTAATGAACTAGATAAAAAC-ACACTAGAAACTTGATAG-AAAGTTGGGAAATTTC-GATAAAT--AA-TC-TGA-GATTCC-TCCGACTCTT-ACCCCGGCTTT-----TATATCGTGA--CATA-T----------CACATGTCAG--CTATATGAAAGTGG-AGG-TAAGA-GTCAGGGGANTCTCAC-ATTAATCAATAAAGCGCGTTTAT-TAANAAGAGA-TGAAAGAAAAA-AATCAATTTCTCAGGATATATAGATAAAATTTCAGT-GCGAAATTGC--AA-GAACTGTATCTGCATCAAAGNCATTGTTTTTT-GACGAA-------T-TTT-TT-TTTCAG--CCCGT-GGTCTTGATATT-CCC-TCCA-TGAAGAC-GGTTGT-A-AATT---ATGATGTCGCTCGAGATATTGACACGCACACACA-CAGGATTGGA--CGAACAGGACGTGCA-GGTA-TGTAATAAATGTCACGGCTGATCGACACTTGTTATAGCTTTGACA-GTGAAAGATATTTGTA-GAT-TA-TATTTATATAT-AAAGTAAGGTTTGCAACAACA-GGGAGAT-AACTCT--AT-CGAGGTACCTCCATGCTC-CTCCCACTTTATG-ACATCACA-ATGTACGTGGTCTATATAGGT----TTGTATCGGCAGGGAGAA-GTCATCATATTTTTTTC--AATATTTATTTTAATACC-GCTGTCAGGTGTAAAGTCATTTGCCAGTAAAT-TGT-CCATTTCAGATTC---A--GTTGTTGATTTTTTTTGGT-TC----TATA--------TAT----CGTATAAGACATTGAAGT-CCCTGCCTGGCTACTAA--GTATGTAGG-AACATGCGGAACTTCGTTTCGGCTATTATT-G-T-AACGACTAGT-AGTGCTATGCAACTT-TCTTGATGTTATA-ATACCAGCTCCTC-TACGGTGATGGTAA-TCTG-ATATTCCTGAATAGAGG--A--TG--GTGTG-CTNATGA--TACCAACTAGT-GCTGTAA-AATCGGAC--AAAATTTA-CTATCGATTATTAAATTGA-ATCGGCAGTACACAGTCGATTT-ATAAAATCGATTA--TTT-GAACTTCCTCC-ATT-TCAAA--TGCGTG--GATCGAAAGGTTATGTAACGATGCATCATA-AATA-CCTAAGT-A-A---AAAA-AGTGT-ACG----GTC---TGTC-A-GTC--A-T---T-G-TC--A-CGAGAA--T-AT-AAGAGTT-A-T-GTCCC-TT-----A-GTAA-TATTAA-AAA-TGAAAC--GTTAC-G-TGAA-T-ATACTACTT-CCGGAA-TA-GTCAG-CGACAA-TCGATGTCCAA-AATTTATAATCG-ATTGTCG-CCAAGT-GCTG-CTTTC-AGCGACGATT-TTTC-GAT-AGTCGGC--GACTATCGTAACAACAC
Reference ( family-213 ) : CATTAAATC-AATTTAT--TT---TTTTAATGAACTAGATAAAAAC-ACACNAGAAACTTGATAG-A--GTTGGGAAATTTC-GATAAAT--AA-TC-TGA-GATTCC-TCCGACTCTT-ACCCCGGCTTT-----TATATCGTGA--CATA-T----------CACATGTCAG--CTATATGAAAGTGG-AGG-TAAGA-GTCAGGGGANTCTCAC-ATTAATCAATAAAGCGCGTTTAT-TAANAAGAGA-TGAAAGAAAAA-AATCAATTTCTCAGGATATATAGATAAAATTTCAGT-GCGAAATTGC--AA-GAACTGTATCTGCATCAAAGNCATTGTTTTTT-GANNAA-------T-TTT-TT-TTTCAG--CCCGT-GGTCTTGATATT-CCC-TCCA-TGAAGAC-GGTTGT-A-AATT---ATGATGTCGCTCGAGATATTGACACGCACACACA-CAGGATTGGA--CGAACAGGACGTGCA-GGTA-TGTA-TAAATGTCACGGCTGATCGACACTTGT-ATAGCTTTGACA-GTGAAAGATATTTGTA-GAT-TA-TATTTATATAT-AAAGTAAGGTTTGCAACAACA-GGGAGAT-AACTCT--AT-CGAGGTACCTCCATGCTC-CTCCCACTTTATG-ACATCACA-ATGTACGTGGTCTATATAGGT----TTGTATCGGCAGGGAGAA-GTCATCATATTTTTTTC--AATATTTATTTTAATACC-GCTGTCAGGTGTAAAGTCATTTGCCAGTAAAT-TGT-CCATTTCAG--TC---A--GT--TTGATTTTTTTTGGT-TC----TGTA--------TAT----C-TATAAGACATTG-AGT-CCCT--CTGGCTACTAA--GTATGTAGG-AACATGCGGAACTTCGTTTCGGCTATTATT-G-T-AACGACTAGT-AGTGCTATGCAACTT-TCTTGATGTTATA-ATACCAGCTCCTC-TACGGTGATGGTAA-TCTG-ATATTCCTGAATAGAGG--A--TG--GTGTG-CTNATGA--TACCAACTAGT-GCTGTAA-AATCGGAC--AAAATTTA-CTATCGATTATTAAATTGA-ATCGGCAGTACACAGTCGATTT-ATAAAATCGATTA--TTT-GAACTTCCTCC-ATT-TCAAA--TGCGTG--GATCGAAAGGTTATGTAACGATGCATCATA-AATA-CCTAAGT-A-A---AAAA-AGTGT-ACG----GTC---TGTC-A-GTC--A-T---T-G-TC--A-CGAGAA--T-AT-AAGAGTT-A-T-GTCCC-TT-----A-GTAA-TATTAA-AAA-TGAAAC--GTTAC-G-TGAA-T-ATACTACTT-CCGGAA-TA-GTCAG-CGACAA-TCGATGTCCAA-AATTTATAATCG-ATTGTCG-CCAAGT-GCTG-CTTTC-AGCGACGATT-TTTC-GAT-AGTCGGC--GACTATCGTAACAACAC
gi|1 : CATTAAATC-AATTTATAGTTACATTTTAATGAACTAGATCAAAAC-ACAC------CTTGATAGAA--GTTGGGAAATGTC-GATAAAC--AG-TC-TGA-GATTCC-TCCGACTCTT-ACCCCGGCTTT-----TATATCATGA--CATA-T----------CACATGTCA---CTATATGAAAGTGG-AGG-TAAAA-ATCAGAGGAGTCTCAT-ATTAATCAATAAAGCGCG---GT-TAAGAAGAGA-TGAAAGAAAAA-AAGTAATTTCTCAGGATATATAGATAAAATTTCAGT---GAAATTGC--AA-GAACTGTATCTG-ATCAAAAGCATTATTTTTT-GACCAA-------T-TTT-TT-TTTCAGATCCCGT-GGTCTTGATATT-CCC-TTCA-TTAAGAC-GGTGGT-A-AATTAAAATGATGGTGCTCGAGATATTGACACGCACACACA-CAGGATTGGACGCGAACAGGACGTGCAGGGTA-TGTA-TAAATGTCAC-GCTGATCGACACTTGT-ATAGCTTTGACA-GTGAAAGATATTTGTA-GAT-TA-TATTTATATAT-AAAGTAAGGTTTGCAACAACA-GGGAGAT-AACTCTTGGT-CGAGGTAACTCCATGCTCGCTCCCACTTTATGAACATC-CA-ATGTACCAGGCCTATATAG------TTGTATCGG-AGGGAGAACGTCATACTATTTTTTTCAAAATATTTA-TTTAATACCGGCTGTCAGTTGTAAAGTCATTTG-CAGTAAAT-TGT-CCATTTCAGATTCAGAA--GTTGTTGA-TTTTTTTGACATG----TATA--------TAT----CGTATAAGACATTGAAGT-CCCTGCCTGGATACTAA--GTATGTAGG-AACATGCCGAACTTTGTTTCGGCTATTGTC-GTT-AACTACTAGT-AGTGCTATGCAACTT-TCTTGATGTTATA-ATACCAGCTCCTC-TACGGTGATGGTAA-TCTG-ATATTCCTGAATAGA----C--T----TATG--TAATAA--TACCAACTAGT-ACTGTAA-AATTGGAC--AAAATTTA-CTATCGATTATCAAATTGA-ATTTGCAGTACACAGTCGA-TT-ATAAAATCCATTA--TTT-GAACTTCCTCC-ATT-TCTGA--TGCGTG--GATCAAAAGGTTATGTAACGATGCATCATA-AATA-GTTACGT-A-AAACAAAA-AATGT-ACC----GTC---TGTC-A-GTC--A-T---T-G-TC--A-CAAGAA--T-AT-AAGAGTT-A-T-GTCCC-GT-----A-GTAA-TATTAA-CAA-TGAA-----TT--------A-T-ATACTACTT-CTAGAA-TA-GTCAG---------TGATGTCCAA-AATTTATAATCG-ATTGTCG-CCAAGT-ACTG-TTTTC-AGCGACGATT-TT------------------CTATCGTAACAACAC
gi|10 : ---TGTCGA-GTC--AGC---T-GATC--C-AGAGAA--TCAT-TAGAGTT-A-CAGTCCCCTT-----A-G-AA-TATAAA-AAACTGAAACCCGTTACAG-TGAA-TTATACTACTTTCCGGAAATACGTCGGGTGACAA-TTGATGTTCAACAATTTATAATTGCATTGTGGGCCAAGTTGCTG-CTTTC-AACGACAATT-TTTC-GATGAGT
gi|11 : TC-G-ATC--A-T---TTG-T---A-TGAGAA--T-ATTAAGAGTTTA-A-GTTCC-TTC----A-GTAA-TTATAA-AAC-TGAACC--GTTCA-T-TGAA---ATA-TACTG-TCGGAA-AA-GACAG-CG-CAA-TCAATGTTCAA-ACTTTATAATCG-A-TGTCG-CCAAGT-G-TG-CTTTTAAGCAACGA-T-TTTC-GAT-AGTCAGCTAGACTATCGT-ACAACgagggataatctctaac
gi|12 : tTT-A-A-GTCCC-TT-----A-GTAA-CATAAA-AAC-TGAAACC-GTTACAG-TGAA-TTATACTATAT-CCGGAA-TA-GTCAG-CGACAAATTGATGTTCAA-AATTTATAATCG-ATTGTCG-CCAAGT-GCTG-CTTTC-AGCGATGATT-TTTC-GAT-AGTCGGC--GACTATCATAACAAcactaaatt
gi|13 : A-TT-GTTAG-CGACAA-TCGATGTTCAA-AATTTATAATCG-ATTGTCG-CCAAGT-GCTG-TTTTC-AGCG-CGATT-ATTC-GAT-AGTCGGC--GACTATCGTAACAACAgtacacta
gi|17 : gtatgagtgctggtc-TC-TGA-GATTGC-TCAG-CTCT-------GTCTCT-----TACATT-TGAGGTACA-TGGGAGACCCACACATGT--A--TTATATAAAAGTGG-GGGGTAAGA-GTCAGAGGAATCTCA
gi|18 : GATGTC----AATTTATAATCG-ATTGTCG-CCAAGT-GCTGTTTTTC-AGCGACGATTATTTCTGAT-AATCGGC--GAATATCATAACAACACga
gi|19 : --AA-TC-TGA-GATTCT-TCTGACTCTT-ACCCCTGCTTT------------TGA-----A-T----------TACATG---------TATGACA-TAC-AGG-GAAGA-GTCAGt
gi|2 : CATTAAATC-AATTTAT--TC---TTTTAATGAACAAGATACAAACCACACT-GAAACTTGATAG-A--GTTGGGAAATT-C-GATAAAT--AAATC-TGGCGATCCA-TCTGACTCTT-ACCC-GGCTTT-----TATATCACGAA-CATAAT----------CACATGTCAGTACTATATGAAAGTGG-AG--TAAAACGTCAGGGGATTCTCACGATTAATCAATAA-GCACGTTTAT-TAATAAAAGAATGAAAGAAAAA-AATCAATTTCTCATG-TATATAGATAAAATTTCAGT-GCGAAATTGCCAAG-GAACTGTTGCTGCATCAAAGCTATTGTTTTT--GACAAT-------T-TTTGTTGTTTCAG--CCCGTTGGTCTTGATATT-CCCATCCA-TGAAGAC-GGTTGTTA-GATT---ATGATGTCGCTCGAGATATTGACACGCACACACATCAGGATTGGA--CGAACAG--CGTGCA-GGTAATGTAATAAATGTCACGGCTGAT-GCCACTTGTTATAGCTTTGACC-GTGAAAGATATTTGTAAGAT-TAATATTTATATAT-AAAGTAAGGTTTGC--TAACACGGGAGAT-AACTTT--AT-CGAGGTAC-TCCATGCTC-CTCCCACTTTATG-ACATCACAGATGTACATGGTCTATATAGGT----TTGTATCGGCAGGGAGAA-GTCATCATATTTTTT-C--AATATTTATTTTAATAC--GC-GTCAGGTGTAAAGTCATTTGCCAGTAAAT-TGT-CCATTTCAG--TC---A--GT--TTGATTTTTTTTGGT-TCTTCATGTA--------TATATCAT-TATAAAGAATTG-AGT-CCCT--CTGGCTACTAA--GTATGTAGGCAACATGCGGAACTTCG-TTCGGCTATTATT-G-T-AACGA-TAGTAAGTGC-AT-CAACTTGTCTTGAT-TTATGCATACCACTTCCTCTTACAGTGATGGTAATTCTG-ATATTCCTG-ATAGAG------------ATG-CTTATAA--TA-CAACTAGT-GCTGTAA-AATCGGACAAAAAATTTACCTATCGATTATTAAATTGACATTGGCAGTACACAGTCGATTTAATAAAATCGATTAATTTT-GAACTTCCTCC-A-T-TCAAA--TGCGTG--GCTCAAAAGGTTATGTAACGATGCATCATA-AATT-CCTAAATAA-A---AAAA-AGTGT-AAG----GTCTCATGTC-A-GTCAAA-G---T-G-TCCTA-CAAGAA--T-AT-AAGAGTT-ATT-GT-CC-TT-----A-GTAAGTATTAACCAA-TGG--------------GAATT-ATACTACTT-CTAGAA-TA-aataaaagccatatta
gi|20 : tATGTCCAA-AATTTATAATCG-ATTGTCG-CCAAGT-GCTG-TTTTC-AGCGACGATT-TTTC-GAT-AATCGGC--GAATATCATAACAACAC
gi|21 : TGTACCAACA-GGGAGAT-AACTC----T-TGATGCACCTCCGTACAC-TTCCCACTTTAT-----------ATATATTTTG--TATACATGT----TTGTAt
gi|22 : TA-ATACCAGCTCCTC-TATGATAATAGCAA-TCTG-ATCTTCCTGAATAGAGG--ATGTG--GTGTA-CTGATGA--TAC
gi|24 : TACCAACTCCTC-TATGATGATGGTAA-TTTA-ATCTTCCTGAATAGAGT--A--TA---------TTATAA--TACCAACT
gi|25 : T--AA-TC-CGA-GATTTG-TCTGACTCTA-ACCCCCGCTTTAATTTTATATTGTGA--CGT
gi|26 : T--AA-TC-CGA-GATTCC-CCAGACTCTTAACCCCCGCTTT-----TATATTGTGA--C
gi|3 : ccAATCCAATTTAA--TT---CTTTAATGAAC-AGATACAAAC-ACACATGAA-CTTGATAG-A--GTTGGGAAATTTCTGATATATGAAA-TCATGC-GA--CCATCTGACTCTT-ACCC-GGCTTT-----TAT-TCAGGA--CATA-T----------CACATGTCAG--ACATATGAAAGTGGCACG-TCAAC-GTCAGGGGATTCTCAC-ATTAATCAATAAAGCACAGTTATATAA-AAGA-A-TGAAAGAAAAACAATCAATTTCTCAAT-TATA-AGATAAAATT-CAGT-GCGAA--TGC--AAAGAACTGTTGCTGCATCAAAG-CATTGTCTTTT-GAGGAAACAGATTT-TTT-TT-TTTCAG--CCCGT-GGTCTTGATATTTCCC-TCCAATGAATACTGGTTGT-ACAATT---ATGATGTCGC-CGA-ATAATGACACGCACACACA-CAGGATTG-A--CGAACAGA--GTG-A-GGTA-TGTAATAAATGTCACGGCTGATTG---CCTGTTATAGCTTTGACACGTTGAAGATATTT-T--GATCTA-TATATATATATTAAAGTAAGGTTTGCA-TAACA-GGGAGATCAACTTT--ATACGAGGTACCTCCATGCTC-TCTCCACTTTATG-ACATCACA-ATGTACGTGGTCTATATAGG-----TTGTATC-GCAGG--GAA-GTCATAATATTTTCTTC--AATATTTATTTTAATA-C-GC-GTCAGGTGT-AAGTCATTTGCCA-TAAATGTGTCCCATTTCAA--TC---ATTGT--TTGATTTTTTTTGGT-TC----TTCATGTTTAACTAT----C-TATAA---ATCG-AATGTCCT--CT-GCTACTAACCGTATGTGGC-AACATGGGAAACTTCG-TTCAGCTATTATTCG-TCAACGACTATA-AGTGC-AT-CAACTT-TCTTGAT-TTATA-ATACCAGTTCCTCTTACAGT-ATGGTAA-TTCGAATATTCCTGAAT--AGG--A---------TG-CTTATAAATCACCAACTAGTAGCTGTAA-AATCGGACA-AAAATTTA-CTATCGATTATTAAATTGA-ATTGGC--TATAAAGTCGATTTAATAAA--C-ATTA--TTTAGAACTTCCTCCGATTATC-AA--TGTGTG--G-TCAAAAGGTTATGTAAC-ATG-ATCATA-AATATCCTAACT---A---AAAA-AGTGT-ACA----GTC-----TC-ATATC--G-TATGT-G-TC--CTCAAGAA--T-AT-AAGA-TT-A-T--TGCC-TT-----A-GTAT-TATTAACCAA-TGG--------------GAATT-ATACTACTT-CTAGAA-TA-gaa
gi|4 : tcatctacCATTAAATC-AATTTAT--AT---TTT-AATGAACTAGATAAAAAC-ACACTAGAAACTTGATAG-AAAGTTGGGAAATTTC-GATAAAT--AA-TC-TGC-GATCCA-TCTGACTCTT-ACCCCGGCTTT-----TATATCATGA--CATA-T----------CACATGTCAGTACTATATGAAAGTGG-AGG-TAAAA-GTCAGGGGATTCTCAC-ATTAATCAATAAAGCACGTTTAT-TAATAAAAGA-TGAAAGAAAAA-AAT-AATTTCTCAGGATATATAGATAAAATTTCAGT-G-GAAATTGC--AA-GAACTGTATCTG-ATCAAAAGCATTGTTTTT--GAC-AA-------T-TTT-TT-TTTCAG--CCCGT-GGTCTTGATATT-CCA-TCCA-TAAAGAC-GGTTGT-T-AATT---ATGATGTCGCTCGAGATATTGACACGCACACACA-CAGGATTGGA--CGAACAGGACGTGCA-GGTA-TGTA-TAAATGTCAC-GCTGATCGACACTTGT-ATAGCTTTGACA-GTGAAAGATATTTGTA-GAT-TA-TATTTATATAT-AAAGTAAGGTTTGCAACAACA-GGGAGA----------------------TCCATGCTC-CTCCCACTTTATG-ACATCACAGATGTACATGGTCTATATAGGT----TTGTATCGGCAGGGAGAA-GTCATCATA-TTTTTTC--AATATTTATTTTAATA-C-GC-GTCAGGTGTAAAGTCATTTGCCAGTAAAT-TGT-CCATTTCAG--TC---A--GT--TTGATTTTTTTTGGT-T-------------------------------GA------AGT-CCCTGCCTGGCTACTAA--GTATGTAGG-AACATGCGGAACTTCGTTTCGGCTATTATT-G-T-AACGACTAGT-AGTGCTATGCAACTT-TCTTGATGTTATG-ATACCAGCTCCTC-TACAGTGATGGTAA-TCTG-ATATTCCTGAATAGAGT--A--TG---------TTATAA--TACCAACTAGT-GCTGTAA-AATCGGAC--AAAATTTA-CTATCGATTATTAAATTGA-ATTGGCAGTACACAGTCGA-TT-ATAAAATCGATTA--TTT-GAACTTCCTCC-ATT-TCAAA--TGCGTG--GATCAAAAGGTTATGTAACGATGCATCATA-AATA-TCTAAAT-A-A---AAAA-AGTGT-AAG----GTCTA-TGTC-A-GTC--A-A---T-G-TC--A-CAAGAA--T-AT-AAGAGTT-A-T-GTCCC-TT-----A-GTAG-TATTAA-CAA-TGAA-----T-----------T-ATACTACTT-CTAGAA-T
gi|5 : t---TTTTAATGAACTAGATAAAAAC-ACACCAGAAACTAGATAG-AAAGTTGGGAAATGTC-GATAAAC--AA-TC-TGC-AATTCC-TCCAACTCTT-ACCCCGGCTTT-----TATATCAT-----------------------ATGTCA---CTATATAAAAGTGG-AGG-TAAGA-GTCAGAGGAATCTCAT-ATTAATCAATTAAGCGCG---AT-TAAGAAGAGA-CGAAAGAAAAA-A--TAATTTCTCAGAATATA--AATAAAATTTTCGTAGC--AGTTGC--AA-GAACTGTATTTG-ATCAGAGTTATTGTTTTTGAGAAAAA-------TATTTATT-TTTCAG--CCCGT-GGTCTTGATATT-CCC-TCCA-TAAAGAC-GGTGGT-A-AATT---ATGATGTTGCTCGAGATATTGACACGCACACACA-CAGGATTGGA--CGAACGGGACGTGCG-GGTA-TGTA-TAAATGTCGC-GCTGGTCAACGCTTGT-ATAGCTTTGACA-GTGAAAGTTATTTGTA-GAT-TA-TATTTATGTAT-AAAGTAAGGTTTGCAACAACA-GGGAGAT-AACTCTTGAT-CGAGGTACCTCCATGCTC-CTCCCACTTTATG-ACATCACA-ATGTACA-GATCTATATACATGTAGTTGTATC-GCAGGGAGAA---CGTCATA-TTTTCTC--AATA-----TTTAGTACC-GCTATCAATTGTAAAGTCATTTG-CAGAAAGA-TGT-CCATTTGAGATTC---A--GTTGTTGA-TTCTTTTGGT-TC----TATA--------TAT----TGTATAAGACATTGAAGT-CCCTGCCTGGCCACTAA--ATATATAGG-AATATGCGGAACTTCGTTTCGGCTATTGTT-G-T-AACGACTAGT-AGTGCTATGCAACTT-TCTTGACGTTATA-ATACCAGCTCCTC-TACGATGATGCTAA-TCTC-ATCTCCCTGAGTAGAGGGTG--TG--GTGTG-CTGATGA--TACTA-------GCTGTAATAATtttggagagagattggttcccaccaagatatattcgat
gi|6 : tataTAGT-GTTGTAA-AATCGGAC--AAAATTTA-CCATCGATTATTGAATCAA-ATCGGCAGTACACAATCGATTT-ATAAAATTGATTA--TAT-GAACT---TCC-ATT-TTAAAGTTGCATATTGATTGAAgtagccccccgcttttcttgattttta
gi|6 : TT---TGTC-A-GTC--A-T---A-G-TT--A-CGAGAAAGT-TT-AA-AGTT-A-T-ATCCC-TTTATTAA-GTAA-TATTAA-AAC-TGAAACT-GTTACCG-TGAA-T-ATACTATTT-CCAGAA-TA-GTCAG-CGACAA-TCGATGTCCAA-ATTTTATAATCA-ATTGTCG-CCAAGT-GCTG-CTTTC-AGCGATGATT-TTTC-GAT-AGTCAGT--GACTATTGTAACAACACgtacacatatgacattcattttgagtgacagatatgccaataacacttagtttgctttgtagtaatgacatagatttacttcatatttgtcagtcatagttacgagaaagtttaaagttatatccctttattaagtaatattaaaactgaaactgttaccgtgaatatactatttccagaatagtcagcgacaatcgatgtccaaattttataatcaattgtcgccaagtgctgctttcagcgatgatttttcgatagtcagtgactattgtaacaacact
gi|7 : tagtgttgtaaaatcggacaaaatttaccatcgattattgaatcaaatcggcagtacacaatcgatttataaaattgattatatgaacttccattttaaagttgcatattgattgaagtacacatatgacattcattttgagtgacagatatgccaataacacttagtttgctttgtagtaatgacatagatttacttcataTAGT-GTTGTAA-AATCGGAC--TAAATTTA-CCATCGATTATTTAATTGA-ATCGGCAGTA--------------TGAAATCGATTA--TTT-GAACTTCCT-----T-TTAAAGTTGCAT----ATTGAA--------TAACG-TACA-CGTGGAATA---TGGGT-ATA---GACATAGCATTACTTCATATT---TGTA-A-GTC--A-T---A-A-TT--A-CAACAA--A-GT-TAGGGTT-A-T-ATCCC-TA-----AAGTAA-TTTTAA-AAC-TGAAATT-GTTAC-GGTGAA-TTATAGTATTT-CTGGAA-TA-GTCAG-CGACAA-TCGATGTCCAA-AATTTATAATCG-ATTGTCG-CCAAGT-GCTG-CTTTC-AGCGACGATT-TTTC-GAT-AGTCGGC--GACTATCGTAACAACACt
gi|8 : TA-ATACCAGCTCCTC-TACGATGACGATAA-TCTG-ATATTCCTGAATAAAGG--A--TGCTGTGTG-CTGATGA--TACTAACTt
gi|9 : TA-ATACCAGCTTCCC-TATTGATATAGCAA-TC-G-ATCTTCCTGAATAGCGG--ATGTG--GTGTATCTGATGA--TAC-------T-ACTGTAA-TATgtaataatgtagccaccgcctctctgattttttttcttttagggagggggggggggcagtcagaatttaaaaaaatcggagatagttatatttagctaagatgacatatgtatagtaccactgtctgtccatgtagactctaggtagccccgtgttacagtgctcagcctctcttgtcgcttgtacaacttttccatctggtaggcattccgtacattccagcagtcctctctgtgtaaatgag
4 sequences could not be aligned to this reference sequence:
Unaligned ( gi|14 ): AGATCTAGACTCCAGATAGTCCTGTGTTACAGTGCCCCGCCTCTCTTGTCACTTGTACAATTTTTCCATCTGGTGATCTGTACATTCCAGCATTACTCTCTGTGTAAATGA
Unaligned ( gi|15 ): TAGCTGTAATAATGTAGTCCCTGCCTCTTTGATTTTTTTTTAGGGAGGGAGTGGGGGGGGGGGCGAAATAAAAAAATCGGAGATGGTTATATTATTGCAGCT
Unaligned ( gi|16 ): AGCTGCAAATAATGTAGCCCCCTCCGATTTTTTTTATTCTGTCACGTTTACGGGAGAGAGAGAGAGAAAAAAAAAGGAGATGGCTACATTATTGCAACT
Unaligned ( gi|23 ): AGCTGCAATATGTAGCCCTCTCCGATTTTATAATTAAAAAAAGGAGAGGGCTACATTATTGCAGCC