lowQualScore : 1111111111 2222222222222222222222 22222222222222222222222222222222222222222222222222222222222 2222222222222222 11111111111111111111111111111111 11111111111111 2222222222222222222222222222222222222222222222222222222222222222222222222222222222 1111111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 4 4 666666666666666 1 22 666 1 99999999 4 44 1 8888 1 2222222222 1 0000000000000000000000 6666 55 4 8888 1 55 00000000000000000000000000000000000000000000000000000000000 1 4 4 77777 4 5555555555555555 33 333 1 22222222222 1111 1 55 22222222222222222222222222222222 777 66666666666666 11 4 4 888888888888888888 2 22 66666666 22222 4444444444444444444444444444444444444444444444444444444444444444444444444444444444 222 7777777777777777777777777777777777777777777777777777777777777777777777777777777 1 222 1 1 1 11 111 1 1 11 111 111 444444444444444444444 66666666666666666 111 1111 2222222222 11 11111 1 1111111111 2222222222 111111 2 222222 1111 333333333333333333333333333333333 1111111 1 444 33333333333 111 111111 4444444444444444 33333333333333333 111 222222 11 222222 11111 33333333333333 111 1111111 1111 1 11111 1 1 1 77777777777 1 1 33
lowQualScore : 6 0 6 0 6 222222222222222 5 11 333 6 5 88888888 0 6 66 7 5555 7 7777777777 6 5 6 9999999999999999999999 2222 55 0 6 5555 5 55 44444444444444444444444444444444444444444444444444444444444 5 0 0 77777 6 0 6666666666666666 00 111 3 8 8 88888888888 2 1111 5 55 77777777777777777777777777777777 000 22222222222222 22 0 0 222222222222222222 0 3 77 66 3 6 3 77777777 55555 4 8888888888888888888888888888888888888888888888888888888888888888888888888888888888 333 6 7 77 5 77 5 6 4 2222222222222222222222222222222222222222222222222222222222222222222222222222222 3 555 3 3 3 33 777 0 33 2 0 0 33 8 111 111 111111111111111111111 3 33333333333333333 1 222 66 7777 6666666666 33 00000 3 0 9999999999 3 3 3333333333 0 555555 22 4 2 000000 6666 777777777777777777777777777777777 66 3333333 66 0 5 5 8 999 5 5 55555555555 5 4 5 5 555 7 6 111 6 6 111111 5 5 4 0000000000000000 2 5 9 5 88888888888888888 1 555 6 77 66 77 77 999999 22 555555 888 66 00000 2 3 55 99999 7777777 4 55 11111111111111 111 2 7777777 6 6 8 8 3 7777 6 2 0 8 66666 6 1 6 5 5 2 3 5 0 88888888888 8 2 6 8 3 0 11 6
lowQualScore : . . . . . ............... . .. ... . . ........ . . .. . .... . .......... . . . ...................... .... .. . . .... . .. ........................................................... . . . ..... . . ................ .. ... . . . ........... . .... . .. ................................ ... .............. .. . . .................. . . .. .. . . . ........ ..... . .................................................................................. ... . . .. . .. . . . ............................................................................... . ... . . . .. ... . .. . . . .. . ... ... ..................... . ................. . ... .. .... .......... .. ..... . . .......... . . .......... . ...... .. . . ...... .... ................................. .. ....... .. . . . . ... . . ........... . . . . ... . . ... . . ...... . . . ................ . . . . ................. . ... . .. .. .. .. ...... .. ...... ... .. ..... . . .. ..... ....... . .. .............. ... . ....... . . . . . .... . . . . ..... . . . . . . . . . ........... . . . . . . .. .
lowQualScore : 0 0 0 0 0 000000000000000 0 00 000 0 0 00000000 0 0 00 0 0000 0 0000000000 0 0 0 0000000000000000000000 0000 00 0 0 0000 0 00 00000000000000000000000000000000000000000000000000000000000 0 0 0 00000 0 0 0000000000000000 55 000 3 0 0 00000000000 5 0000 5 00 00000000000000000000000000000000 000 00000000000000 00 0 0 000000000000000000 0 0 55 55 0 0 0 55555555 00000 0 7777777777777777777777777777777777777777777777777777777777777777777777777777777777 333 7 3 99 7 99 7 7 7 3333333333333333333333333333333333333333333333333333333333333333333333333333333 3 777 3 3 3 88 555 0 22 5 0 8 88 0 777 888 222222222222222222222 2 00000000000000000 4 888 66 0000 0000000000 88 88888 2 0 0000000000 2 5 0000000000 8 666666 00 0 8 888888 8888 444444444444444444444444444444444 99 8888888 99 0 7 7 7 111 7 7 99999999999 7 3 7 7 999 0 7 777 7 7 888888 7 7 9 4444444444444444 1 7 3 7 00000000000000000 4 777 0 99 00 11 99 111111 11 222222 888 99 88888 1 6 00 11111 3333333 4 11 77777777777777 777 5 8888888 7 7 0 0 8 0000 5 5 0 0 77777 7 0 7 0 7 5 8 6 6 88888888888 0 2 0 0 8 0 77 0
consensus : NAACTTTTGTCCACTTTCTGACAATATTACTATGTAGAGC-GTGGAAAGTACACAAATAAAACTTTTGGAGTATTGAAATCAAAGTGTTT-TTAGA-AAAGTAATC-GAGCAGAAAAACTGATGTTTCATCAATTTTGAGTTTGGTTGTAGAAATTTTGTATATTAGGAAAATTTTTAAATTACATAAATTCCGAATTGTCAACAACTACTCT--AGTAGTCGTTCTGGGTTTTCTTTTTTTAAATAAAGTTGCATTAGTGGATAAGAAGTCACATCC-ATGGGCATT------AAAATGCATTTGTTTTTTAATGTCAA-GAAATATCTTAAACAAATATCTATAAGCTTCAGACATAGTGTGTCCTTATTCGTTTCGTGTTTTTATGCATGCATTAAAGAACATATCCTCATNTTTTACAACAC-TTGTGTTGC-ACTC-CTGAC----ACGGT--TACATACAGCAATTGCATGGATAAATTATGCCGATGTTAGTTGCAAATAGGAAATTAATAATTTACTATTACTAAAAAAACTCACATATTAAAGGAAAGACTTGATGTTGATCTCTAGTTTTTAGACTCAAGTTTTATCATTTTTCTAGTAAATNTAAACNTGTCGTGTAATTAAGCGGATNGGGGAAATCATGGGTCAAAAATAACCTNNCACATNTTTTNTTNTTTTTGCTGAAACGNCATTCTGCNAGTAGTTTGGAATTCG--TAT--NT------------------AA---ACA--A-AAA----AT----TAA-----A-AT---------T------TAAA---CTAAANAATTGTATTTAAAAAGTGT--TG-C--ACT-CCTGAC-ATGGAAAAGATAGCCCTNTGG---GCAAAA---T-----ACAACTTTTT-CTGTCGTC-CTT-TTT-C---AA-G-TAATG-C----TTCTA--T-GC--CTC-TTTTGA--AAAATAAAGAAAA-GGATTAT-ATT-GGTAAAGTT--AATTTTT---AAT-GGTGCCAGTCAAAAGT-CGA--AATGTTGC-ACTCC---TGACC-ATGAGGG--------GTA----------TGCTCATTAAGGC---ATT--------GACTCCCTCAAAGTTTA----CATGGATGCCAGCCA-GT-----TACTTTTTT--CTTTTATTCAACAGAAGA-GATATTGCTTTAAAAGTTTAGATTTCTTTT--G-T-----AGTT-NAA--TTGATATTATTTANTTCTCAAGAC-A---CTTT-TTGCACAAATT---GG-TCAT-------TCT--TTG--TG-TTG--CACT----C--CT--GA-CATGGT-ACTA-CATTTTTTT---AGCTGA-GATT-AAAGCCATATC---TT-A---AGCC-TAAA-GT-GTTTC-A-TCATTCTTGGAA-T---TTAAA-A-GTAT-A--TAGAT-TG-AAGATTT-T--TN--A---A---CAACAGTNT-CCTTTTA-AT-NN-AGAT-CTTTTT--GTTTCGAT---AGACAGG--AA-TTTG-AAAAAA--G-N----CA-NATTTTTT--AA-TG---TCA--CAAAA----AAGCGTTG-C--ACTCCTGAC-----ATTTTAG--GCG--ACGTTTT-AGGA-CACCAATCTATCA-TTCTT--TG----AGA---TATNTCT-TA-GATTT-TTGGAACACAC-ATAC-AC-AATATCATG----ACACAANA-TA-TGG-----TA-TCCCTA-AAATCACCCAGACTGTTTGTAAAACATGTAAATTTGG----TCAAATA-TGCCTTG-CCTCATTTT-TT--AAATCAC
Reference ( gi|2 ) : AAACTCT-GTCTACTT-CTGACAACA--ACCACTTATAGCAGTGGAAAGGACATCAATAAT-TTTTTGGGGTATGGAAATCAA----TTTGTTAGATAAAATAATTAGAGCAGATAAACT----TTTCAACAATTTT-AGT------GTAAAAATTTTTTATATTAAGAAAAGT--------ATGCAAAT----AATTGTCAA-AA-TACTCTTAAGTAGTC-TTCTGAGTTTT----TTTTAAATACAGTTGCATTAGTGGATAA--AGTCACCTTCTATG--CATTTTTTAAAAAATGCATT-GTTTTTTAAT---AATGAAA--------ACAACTATCTATAA-CTTCAGACATA-TGTGTCC--AT-CATTTC-TGTTTTTATGCAT---------------CCCTCA-ATTTTA-A-TAC-TTGTGTTGC-ACTC-CTGAC----ACCGT--TACATACAGCAATTGTATGGA--AATTATGT-GA-GTTA-TTGCGA-TAGGAA--TA-TA--TTACTATTACTAAAA---CTCACATATTAAAGGAA---CTTG-------TCTTCAGTTTT-AGACTCAAGTTTTAT-ATTTTTCTA----ATAT---CTT----TGTAATTAAGCA-ATTGGGAAAATCAT--ATCAAAAATAACCTCACACATTTCTTTTTA-----ACTGAAACAA-AT-CTGCTAGTAGTTTAGAATTCA--TAT--AC------------------AA---ACA--A-AAA----AT----TAA-----A-AT---------C------TAAA---CTAAAGAATTGTATTTAAAAAGTGT--TG-C--ACT-CCTGAC-ATGGAAAAGATAGCCCTATGG---GCAATA---T-----ACAACTTTTT-CTGTCATC-CTT-TTTAC---AAAAATAATG-C----TTCTAACTTGC--CTC-TTTTGA--AAAATAAAGAAAA-GGATTAT-ATT-GGTAAAGTT--AATTTTT---AAT-GGTGCCAGTCAAAAGT-CAA--AATGTTGC-ACTCC---TGAAC-ATGAGGG--------GTA----------TGCTCATTAA------ATT--------GACTCCTTAAAAGTTTA----CATGGATGCCAGC-A-GT-----TACTTTTTT--CTTTTATTTAACAGAAGA-GATATTGTTTTAAAAGTTTAGATTTCTTTT--G-T-----AGTT-CAA--TTGATATTATTTAATACTCAAGAC-A---TTTT-TTGCACAAATT---GG-TCAT-------TCT--GTA--TG-TTG--CACT----C--CT--GA-CATGGT-ACTA-CATTTTTTTTTTAGCTGA-GATT-AAAGCCATATG---TT-T---AGCC-TCAA-GT-GTTTC-A-TCATTCTTTGAA-T---TTAAA-A-GTAT-A--TAGAT-TG-AAGATTT-T--TT--A---G---CAACAGTAT-TTTTTAA-AT-TG-AGAT-ATTATT--GTTTCGAT---AGACAAG--AA-TTTG-AAAAAA--G-A----CA-TATTTTTT-TAA-TG---TCA--CAAAA----AAGCGTTG-C--ACTCCTGAC-----ATTTTAG--GCA--ACGTTTT-AGGA-CACCAATCTATCA-ATCTT--TG----AGA---TATCTCT-TG-GAGTT-TTGGAACACAC-ATAC-AC-AATATCATG----ACACAAGA-TA-TGG-----TA-TCCTTA-AAAGCACACAGACTGTTTGTAAAACATGTAAA----A----TAAAATA-TGCTTCG-CCTCATATT-TT--AAACCAC
gi|1 : AACTTTTGTCCACTTTCTGACAATATTACTATGTAGAGC-GTGGAAAGTACACAAATAAAACTTTTGGAGTATTGAAATCAAAGTGTTT-TTAGA-AAAGTAATC-GAGCAGAAAAACTGATGTTTCATCAATTTTGAGTTTGGTTGTAGAAATTTTGTATATTAGGAAAATTTTTAAATTACATAAATTCCGAATTGTCAACAACTACTCT--AGTAGTCGTTCTGGGTTTTCTTTTTTTAAATAAAGTTGCATTAGTGGATAAGAAGTCACATCC-ATGGGCATT------AAAATGCATTTGTTTTTTAATGTCAA-GAAATATCTTAAACAAATATCTATAAGCTTCAGACATAGTGTGTCCTTATTCGTTTCGTGTTTTTATGCATGCATTAAAGAACATATCCTCATGTTTTACA-TACGTTGTGTTGTGACTCACTGAC----ACAGT--TACATACAGCAATTACA-GGATAAATTATGCCGATGTTAGTTGCAAATAGGAAATTAATAATTTACTATTACTAAAAAAACTCACATATTAAAGGAAAGACTTGATGTTGATCTCTAGTTTTTAGACTCAAGTTTTATCATTTTTCTAGTAAATATAAACATGTCGTGTAATTAAGCAGATGAGAAAAATCATGGATCAAAAATAACCTCACACATTTTTTTTTTTTTTTACTGAAACGACATTCTGCAAGTAATTTAGAATTTG--TAT--GCTATTGAATTAATTACCAGAA---ACATGATAAA----AT----TAATATTTA-ATGATAAAAAGT------TAAG---CTAAAGAATTGTATTTAAAAAGTGT--TG-C--ACTGCCTGACGATAGAATAGATAGCTCTGTGGTAAGCTATAAAAT-----ACAACTTTTTTCTA-CATCACTTCTTTAC---AATGTTAATG-TGTCTTTCTA--TGGCTGCTCGTTTTGACAAAAATAAAGAAAAAGGATTATTATTAGGTAAGGTT--AAATTTTCGGAATAGGTGCCAGTCAAAAGTTCAAGGAATGTTGCCACTTCCGCTGAACCATGAGGG--------GAA----------TATTCATTAAGGCTTCATTAGCAGTTGGACTTCCTAAAGGT--A----CATGGATGCCAGCCA-GT-----TACTTTTTTTTCTTTTATTCAAGAGAAGAAGATATGGCTT-AAAAGTTTAGTTCTCTTTT--GAT-----AGTTTCAAATTTTATATTATTTATT-TTCAAGACCACTTTTTT-TTGCACAAATT---GGGTCAT-------TTT--TTGAGTG-TTG--CACT----CACCTTGGA-CATGGTTACTA-CATTTTTTG---AGCTAA-GATTTAACACCATTTA---TC-TTGAAGCCCTAAA-GT-GTTTC-C-TCATTCTTTGAA-T---TTAAA-AAGTATTA--TAGATGTG-A-GATTT-TCTTT--A---AAACCAACAGTATATCTGTTA-AT-TATAGAT-CTTTTT--GTTCCGATT--ATACAGG--AA-TTTGGAAAAAA--G-A----CA-CATTTTTT-AAT-TG---TCA--CAAAA----AAGCGTTG-C--ACTCCTGAC-----ATTTTAG--GAA--ACTTTTTCAGGACCACCAATCTATCATTTCTTTGTG----AGA---TATCTCTGTGCGATTT-TTGGTACACACGATACAACAAATATCATGGACAACA-AAGA-TATTGG-----TATTCCCTA-AAATCATTCA-ACTGTTTGTAAAACATG-AAATTTGG----TCAAATATTGCTTTGCCCTCATGTT-
gi|3 : tatgaaacaaactatctgtatttaactgcaaacattattcaggtgatctaccaattctatatttatgcatgcataaaaaacgtggtcaatttcatcCA-CTTTTA-AACAC-TTGTATTGC-ACTC-CTGAC----ATAG---TACATgcctcattttttttgaaaccaccc
gi|10 : attccatctaaacaagagatgtgataaatatctaaattaattaattgtatttaaaaagtattgcactcctgacataaaaaagatagccctttgggcaaaattttttacttttttctgtcaactttttttcctcaaaaataatgtcttctatgttatctgttttgaaaatgaaaaaaaagattatattggtaaagttaattttgaatggtgtctgccaaaagtcaaaatgttgacctcctgactatgaaaggtatgctcattaaattggctacctcaaagtttacatggaggccagcaggtaaatatactttttccttttcttgaacagaagatagtttagatttcttttgtagtatttaattttcaaaa-TTGCGTTGC-ACTC-CTGAC----Attgtttgagccatatcttaagccccaagtgtttcatcattcttggaattcaaaagtatataaattgaagatatttaaacaacagttttcttttaatatagatcttttttggttttaatagacagagatttgaaaaaagttacatttcttatagtgttttactcttgacattttaagcgacgttttaggccactacttcaatgtgtatatacatgtatctagatgttttggaacacatatacacaatatcatgactcaacatatgtttcctaaaatccctcagtatgtttgtaagacatgtaaaattggtcaaatatattttgcctca
gi|5 : cattctGTGTTGC-ACTC-CTGAC----ATGGTACTACATtggtcttccatttttttgagctgagactaaagccacatcttcagcctaaagtgtttcatcattcttggaatttaaaagcataaagactgaagatttatatacaacagtatctttt
gi|6 : ctcctggccatgaggggtatgctcattaagataaattgacttcctcaaagtttacatggatgccagccagttacttttttcttttattcaacagaagagatactgctttaaaagtttagatttcttttgtagttcaattgatataatttatttctcaagacactttattgcacaaattggtcatttttgTGTTGC-ACTC-CTGACCATGACGGT--TA-------CAATTGTATGttttttgagctgagattaaagccatatcttaaagcctaaaggtggtttcaaagattctttgaatttaaagagtataagtgattgaaagattttttaaaacaatagtatcttttaatatagatctttttgttttgatagacaggagttttgaaaaaagctcaaattttttaaaatgtcacaaaaaagcgttgcactcctga
gi|6 : catttctttgtaattaagcgattggggaaatcatgtcaaaaataacctgtcacatgttttgttagtgaaacacatctgctagtagtttgaaattaaaatattaataattgaaaaaaataatattaaaattcagtgataaaaatctaaactattgaaaaaaaatgtattgcactcctttcctggaaaacacagtcctatggcaaaatagaaccttttgttgtcatcctctcttttgaaaaataaagaaaaggattatattagtaaacttaatttttaatggtgccagtcaaaagtcgaaa----ATTT---CTT----TGTAATTAAGCG-ATTGGGGAAATCAT--GTCAAAAATAACCTGTCACATGTTTTGTTA-----G-TGAAACAC-AT-CTGCTAGTAGTTTGAAATTAAAATATTAAT------------------AATTGAAA--A-AAATAATAT----TAA-----A-AT---------TCAGTGATAAAAATCTAAACTATTGAA---AAAAAATGTATTG-C--ACT-CCTTTC-CTGGAAAACACAGTCCTATGG----CAAAA---T-----AGAACCTTTT---GTTGTC--------------------ATC-C----T------------CTC-TTTTGA--AAAATAAAGAAAA-GGATTAT-ATT-AGTAAACTT--AATTTTT---AAT-GGTGCCAGTCAAAAGT-CGA--AATGTTGC-ACTCC---TGACC-ATGACGGTTACAATTGTA----------TG-TCATTtcatt
gi|3 : cATTC---CAT--CT------------------AA---ACA--A-GAG----ATGTGATAA-----ATAT---------C------TAAA---TTAATTAATTGTATTTAAAAAGTAT--TG-C--ACT-CCTGAC-ATAAAAAAGATAGCCCTTTGG---GCAAAA---TTTTTTAC--TTTTTT-CTGTCAAC-TTT-TTTTCCTCAAAAATAATGTC----TTCTATGTTAT--CTG-TTTTG---AAAATGAAAAAAA-AGATTAT-ATT-GGTAAAGTT--AATTTTG---AAT-GGTGTCTGCCAAAAGT-CAA--AATGTTGA-CCTCC---TGACT-ATGAAAG--------GTA----------TGCTCATTAA------ATT--------GGCTACCTCAAAGTTTA----CATGGAGGCCAGC-AGGTAAATATACTTTTTC--CTTTTCTTGAACAGA--A-GAT-----------AGTTTAGATTTCTTTT--G-T-----AG---------------TATTTAATTTTCAAAAC-A---CTTT-T-----AAA---------CAC-------T-T--GTA-----TTG--CACT----C--CT--GA-CATAG----TA-CATTTGTTT----------------GAGCCATATC---TT-A---AGCC-CCAA-GT-GTTTC-A-TCATTCTTGGAA-T---TCAAA-A-GTAT-A--TAAAT-TG-AAGATAT-T--TA--A---A---CAACAGTTT-TCTTTTA-AT-AT-AGAT-CTTTTTTGGTTTTAAT---AGACAGA--GA-TTTG-AAAAAA--G-T----TA-CATTTCTT---A-T-------------------AGTGTTT-T--ACTCTTGAC-----ATTTTAA--GCG--ACGTTTT-AGGC-CACTA--CT-TCA-ATGTG--TATAT-ACA---TGTATCT-AG-ATGTT-TTGGAACACAT-ATAC-AC-AATATCATG----ACTCAACA-TA-TGT-----T--TCC-TA-AAATCCCTCAGTATGTTTGTAAGACATGTAAA----ATTGGTCAAATA-TATTTTG-CCTCA
gi|5 : AAAAAGCGT--TG-C--ACT-CCTGA
gi|7 : ctcctggccatgaggggtatgctcattaagataaattgacttcctcaaagtttacatggatgccagccagttacttttttcttttattcaacagaagagatactgctttaaaagtttagatttcttttgtagttcaattgatataatttatttctcaagacactttattgcacaaattggtcatttttggtgttgcactcctgacatggtactacatttttttgagctgagattaaagccatatcttaaagcctaaaggtggtttcaaagattctttgaatttaaagagtataagtgattgaaagattttttaaaacaatagtatcttttaatatagatctttttgttttgatagacaggagttttgaaaaaagctcaaattttttaaaatgtcacaAAAAAGTGT--TGGCGGACT-CCTGAC-AT
gi|5 : acaaatttggggtcatggccgggtcttggtgtgattgggcaccgggccttgatcatggtactagcaggtgaagggtaaagcccatggtctttggagcttcacgtgtggcaatcattcttggaaatgggttaggaggaggattggcggtgtaaatgcaacatttcccttttaatataggatcttgttttgatgggagacagggaaatgggcaagaagaggtgcagtagttttaggtgtctcaGTGT--TG-C--ACT-CCTGAC-ATGGtttaggagcgatgttttaggacaccgat
gi|10 : ctcctggccatgaggggtatgctcattaagataaattgacttcctcaaagtttacatggatgccagccagttacttttttcttttattcaacagaagagatactgctttaaaagtttagatttcttttgtagttcaattgatataatttatttctcaagacactttattgcacaaattggtcatttttgGCGT--TG-C--ACT-CCTGAC-ATGGtactacatttttttgagctgagattaaagccatatcttaaagcctaaaggtggtttcaaagattctttgaatttaaagagtataagtgattgaaagattttttaaaacaatagtatcttttaatatagatctttttgttttgatagacaggagttttgaaaaaagctcaaattttttaaaatgtcacaaaaaagcgttgcactcctga
gi|5 : cattctttAAAGCTCAAATTTTT---TAA-AATGTCA--CAAAA-----A--AGCGTTGC-ACTCC---TGAtcttccatttttttgagctgagactaaagccacatcttcagcctaaagtgtttcatcattcttggaatttaaaagcataaagactgaagatttatatacaacagtatctttt
gi|14 : ctcctggccatgaggggtatgctcattaagataaattgacttcctcaaagtttacatggatgccagccagttacttttttcttttattcaacagaagagatactgctttaaaagtttagatttcttttgtagttcaattgatataatttatttctcaagacactttattgcacaaattggtcatttttggtgttgcactcctgacatggtactacatttttttgagctgagattaaagccatatcttaaagcctaaaggtggtttcaaagattctttgaatttaaagagtataagtgattgaaagattttttaaaacaatagtatcttttaatatagatctttttgttttgatagacaggagttttgaaaATGTTGC-AGTCC---TAGTC-ATGAGGG--------GTACATGTACTAGTACTCATTAA------ATT--------GACTCCCACAAAGTATATAATTATGGATACCAGC-A-GT-----TATTT
gi|5 : CTCC---TGGCC-ATGAGGG--------GTA----------TGCTCATTAAGATAA-ATT--------GACTTCCTCAAAGTTTA----CATGGATGCCAGCCA-GT-----TACTTTTTT--CTTTTATTCAACAGAAGA-GATACTGCTTTAAAAGTTTAGATTTCTTTT--G-T-----AGTT-CAA--TTGATATAATTTATTTCTCAAGAC-A---CTTTATTGCACAAATT---GG-TCAT-------TTT--TGG--TG-TTG--CACT----C--CT--GA-CATGGT-ACTA-CA--TTTTTTTGAGCTGA-GATT-AAAGCCATATC---TTAA---AGCC-TAAAGGTGGTTTCAA-AGATTCTTTGAA-T---TTAAAGA-GTAT-AAGT-GAT-TGAAAGATTT-T--TTAAA---A---CAATAGTAT-CTTTTAATAT----AGAT-CTTTTT--GTTTTGAT---AGACAGG--AGTTTTG-AAAAAA--G-CT---CA-AATTTTTTAAAA-TG---TCA--CAAAA----AAGCGTTG-C--ACTCCTGA
gi|12 : CTCCACAAAA-TTGA----TATGGTTACCAGC-T-GG-----TACCCTTTT--CTTT-----AACAGAAGA-GGTGTTGCTTTATAAGTTT---TTCCTTTTTCG-TACCGGAGTT-AAA--TTGATATTAT
gi|4 : TTTC--G-C-----AGTT-AAA--TTGATTATATTTAATTCTCAGGAC-A---CTTT-T-ACACTA---------------------CT--TTA--T--TTG---AGT--------T--TA-CATGGT-ACCA-CAATTTTTTTT-ATCTGC-GATT-AAAGCCAAGTC---TT-A---ATCT-TCAA-TT-TTTTC-A-CCAATGTTGGAA-T---TAAAA-A-ATAT-A--TAGAT-TG-ACCATTT-T--TA--A---A---CAACCATTT-TCTTTTA-ATATG--GATCATT-TT--CTTTTGAT---TGACAGG--AC-TTTG-AAAAAA--GTA----AA-AATTT------A-TG---TCA--CAAAA----ATATATTG-C--ACTTCTGAT-----ATTTTTA--GCG--ACGTTTT-AGAA-CACCAATTCATCA--TTTT--CGTATAAGA---TATATAT-GT-TAGTTATTGAAATACAC-ATAC-AC-AATATCATG----ACATAACA-TA-TGG-----TA-TACCTG-CAATCACCCATACTGTTTGTAAAAGATGTAAAGTTGG----TCAAATA-CGCATTG-CCTTGCTTC-TTG-AAATCAC
gi|7 : ACAAATTTGGGG-TCATGGCCGGGTCTTGGTG--TGATTGGGCACCGGGCC--TT--GATCATGGT-ACTAGCA-----------GGTGAAGGGT-AAAGCC-CATGGTCTT-TGG-AGCT-TCAC-GT-GTGGC-AATCATTCTTGGAAATGGGTTAGG-A-GGA------GGAT-TG-GCGGTGT--------AAATG---CAACATTTC-CCTTTTA-ATATA-GGAT-CTT-----GTTTTGATGGGAGACAGGGAAA-TGGG-CAAGAA--G-AGGTGCAGTAGTTTT---AGGTG---TCT--CAAAA----AAGTGTTGGCGGACTCCTGAC-----ATTTTAGGAGCG--ATGTTTT-AGGA-CACCGATc
gi|15 : G-TCAT-------TCT--TTT--TG-TTG--CACT----C--CG--GA-CATTGT-ACTA-CATTTTGTTG--AGCTGA-GATT-AAAGCCATATC---TT-A---AGCC-TAAA-GT-GTTTC-A-T
gi|10 : tgtatCAT-------TCT--TTG--CG-TTG--CACT----C--CT--GA-CATGGT-CTTC-CATTTTTTTG--AGCTGA-GACT-AAAGCCACATC---TT-C---AGCC-TAAA-GT-GTTTC-A-TCATTCTTGGAA-T---TTAAA-A-GCAT-A--AAGAC-TG-AAGATTTAT--AT--A-------CAACAGTAT-CTTTT
gi|6 : A--TG-TTG--CACT----C--CT--GACCATG
gi|8 : catttctttgtaattaagcgattggggaaatcatgtcaaaaataacctgtcacatgttttgttagtgaaacacatctgctagtagtttgaaattaaaatattaataattgaaaaaaataatattaaaattcagtgataaaaatctaaactattgaaaaaaaatgtattgcactcctttcctggaaaacacagtcctatggcaaaatagaaccttttgttgtcatcctctcttttgaaaaataaagaaaaggattatattagtaaacttaatttttaatggtgccagtcaaaagtcgaa-TG-AAGATTT-T--TA--A---G---CAACAGTAC-TTTTTCA-AT-AT-AGATCATT-TT--GTTTTGGT---AGACAGG--AA-TTTA-AAAAAAATG-T----CA-AATCTTTT-AAA-TG---TCA--CAAAA----AAGTGTTA-C--ACTCCTCAC-----ATTTTAT--ACA--ACGTTTT-TGG--CACCAATTTATCA-TACCT--TG----AGA---AATCTCG-TA-GATTT-TTGGAACAAAC-ATAG-AA-AATATCGTG----acggttacaattgtatgtcatt
gi|13 : TTTTAG-AT-AA-ATAT-ATT--T--GTTTCAAT---CGACAGG--AT-TATG--AAATA--G-T----CA-TATTTTTT---A-TG---TAA--CAAAA----------TG-A--ACTC--AAC------TTTGAG--GTA--ATGTT----GGA-AATTAAT
gi|6 : TTTT-TAA-TGGTGCCAGTCAAAAGTCGAAATGTTG-C--ACTCCTGAC-----
gi|5 : catttctttgtaattaagcgattggggaaatcatgtcaaaaataacctgtcacatgttttgttagtgaaacacatctgctagtagtttgaaattaaaatattaataattgaaaaaaataatattaaaattcagtgataaaaatctaaactattgaaaaaaaatgtattgcactcctttcctggaaaacacagtcctatggcaaaatagaaccttttgttgtcatcctctcttttgaaaaataaagaaaaggattatattagtaaacttaaGTGTTG-C--ACTCCTGAC-----AT----G--GTACTACATTTT-catgacggttacaattgtatgtcatt
gi|10 : ctcctggccatgaggggtatgctcattaagataaattgacttcctcaaagtttacatggatgccagccagttacttttttcttttattcaacagaagagatactgctttaaaagtttagatttcttttgtagttcaattgatataatttatttctcaagacactttattgcacaaattggtcatttttgGCGTTG-C--ACTCCTGAC-----ATtttgagctgagattaaagccatatcttaaagcctaaaggtggtttcaaagattctttgaatttaaagagtataagtgattgaaagattttttaaaacaatagtatcttttaatatagatctttttgttttgatagacaggagttttgaaaaaagctcaaattttttaaaatgtcacaaaaaagcgttgcactcctga
gi|9 : cattctttTTG-T--ATTCCCGACTCTTTCTTTTGG-------ACGCTTT-AAGA-C-TAAATTCATCA-TTTTG--TG----AGG---TATATCT-TA-GA-TT-TTGGAACATAC-AT----C-CATACC-------ACACCAGATTA-GGGGCATATA-TCCATA-AAATCACCCAGACCGTTTGTAAAGCggtcttccatttttttgagctgagactaaagccacatcttcagcctaaagtgtttcatcattcttggaatttaaaagcataaagactgaagatttatatacaacagtatctttt
gi|11 : CTGAC-----AGTTTAG--GCA--ACATTTT-AGGA-CACCAATCTATCA-TTCTT--TG----AGATATTATCTCT-TA-GATTT-TTGGAACACAT-ATA
gi|17 : aattttgagaacaaaatcacaagagtcccatttggcgccccgtaA-TAG-----TA-TCTTTTTAAATCACCCAGACTGTTTGTTAAAC------------------AAATA-TGCCTTG-CCTCATCTTGTT--AAATCA
gi|16 : G-----TA-TCCCTA-AAATCACCAAGTCTGTTTGTAAAACGTGTACATTTGG----TAAAATG-TGCCTTG-CCTCATTTT-TTTAAAGTCAC
Alignments
lowQualScore : 1111111111111111111111111111111111111111111111111111111111111111111111111111111111 1111111111111111111111111111111111111111
lowQualScore : 1 1 11 2 11 2222 2 2 2 2222 1 222222 33333333 2222 1 1 22 1 2222 11 2 11 555555 1 222222 333333 1 22222 33333333 1 333333 2 3333333333333333 22 55555 1 111 1 1 1 1 11 1 1 1 1 11 1 11 222 222 3333333 1 1 2222 2222222222 22 33 66666666 22 3333333333333333333333333333333333333333333333333333333333333333333333333333333333 111 11 1 1 22222222 22222 1 1 1 3333333333333333333333333333333333333333 1 11 1 1 1 111 1 111 1111 222222222222222222222 6666666666666666666 1111 11111 1111111 111 1 2222 11111111 1111 2222 11 111 111 11 1111 22222 11111 111 111 111111 11111 1 111111 111111 333
lowQualScore : 5 5 88 2 2 0 3 3 99 3 3333 0 0 0 4 3333 4 5 999999 2 3 66666666 3333 5 5 77 5 4444 3 88 3 0 77 777777 5 222222 000000 3 66666 88888888 3 111111 0 3 4444444444444444 44 11111 3 555 3 3 2 3 6 7 7 88 5 5 5 5 88 5 88 111 111 2222222 5 5 4444 1 6666666666 44 1 0 55 22 1 1 00000000 66 7 1 0 4444444444444444444444444444444444444444444444444444444444444444444444444444444444 777 1 3 33 0 0 1 77777777 55555 3 0 0 3 6 0 44 7777777777777777777777777777777777777777 0 33 3 0 0 0 777 0 777 8 4444 999999999999999999999 1 3333333333333333333 1 4444 5 66666 99 11 3 0 8 3 0 5 1 0 1 99 6666666 6 3 99 1 3 8 444 8 0 0000 66666666 0 77777 5 66 7777 66 5 5 5 66 3333 5 5 5 66 5 66 5 3 5 5 5 5 0 5 000 5 5 5 5 77 5 5 9999999 555 1 11 5 22 5 0 66 5 888 5 5 0000 66 66 1 66 5 11111 0 1 6666 11111 66 1 4 4 4 5 777 000 111111 1 77 5 5 5 6 99 6 8 8 1 6 6 1 44444 5 5 0 5 999999 999999 8 333
lowQualScore : . . .. . . . . . .. . .... . . . . .... . . ...... . . ........ .... . . .. . .... . .. . . .. ...... . ...... ...... . ..... ........ . ...... . . ................ .. ..... . ... . . . . . . . .. . . . . .. . .. ... ... ....... . . .... . .......... .. . . .. .. . . ........ .. . . . .................................................................................. ... . . .. . . . ........ ..... . . . . . . .. ........................................ . .. . . . . ... . ... . .... ..................... . ................... . .... . ..... .. .. . . . . . . . . . .. ....... . . .. . . . ... . . .... ........ . ..... . .. .... .. . . . .. .... . . . .. . .. . . . . . . . . ... . . . . .. . . ....... ... . .. . .. . . .. . ... . . .... .. .. . .. . ..... . . .... ..... .. . . . . . ... ... ...... . .. . . . . .. . . . . . . . ..... . . . . ...... ...... . ...
lowQualScore : 5 5 55 5 5 0 0 0 55 0 5555 0 0 0 0 5555 0 0 555555 5 0 55555555 0000 0 0 55 0 0000 0 00 0 0 55 555555 5 555555 000000 3 33333 33333333 3 777777 7 3 7777777777777777 77 77777 3 333 3 3 0 3 7 3 3 55 0 5 0 5 55 5 55 555 000 5555555 5 0 0000 0 5555555555 00 0 7 33 00 0 0 00000000 00 3 0 7 0000000000000000000000000000000000000000000000000000000000000000000000000000000000 555 0 2 88 0 0 0 55555555 00000 2 0 0 2 0 0 00 0000000000000000000000000000000000000000 0 88 2 0 0 0 555 0 555 0 2222 777777777777777777777 0 4444444444444444444 4 2222 2 77777 22 44 2 8 0 8 6 6 0 8 0 22 8888888 7 3 22 0 2 0 000 0 6 8888 44444444 2 88888 0 99 5555 99 0 0 0 99 9999 0 0 0 99 0 99 0 0 0 0 0 0 7 7 000 7 7 7 1 99 0 0 1111111 666 0 22 0 00 0 4 99 0 888 0 0 6666 99 00 0 99 0 00000 1 1 9999 11111 11 7 4 4 4 7 999 000 000000 0 11 7 7 7 7 22 7 0 0 0 7 7 0 33333 7 7 7 7 222222 222222 0 000
consensus : NAACTCTTGTCCACTTTCTGACAACATTACCACGTANAGCAGTGGAAAGNACACNAATAANACTTTTGGGGTATNGAAATCAAAGTGTTTGTTAGATAAAGTAATCAGAGCAGANAAACTGATGTTTCANCAATTTTGAGTTTGGTTGTAGAAATTTTNTATATTAGGAAAANTTTTAAATTACGCAAATTCCGAATTGTCAACAACTACTCTTAAGTAGTCGTTCTGGGTTTTCTTTTTTTAAATANAGTTGCATTAGTGGATAAGAAGTCACNTCCTATGGGCATTTTTTAAAAAATGCATTTGTTTTTTAATGTCAATGAAATATCTTAAACAAA-TATCTATA---AGCTTCAGACAT-----AGTGTG-TCC-TAT-CGTTTC-TGTTTTTATGCATGCA-TAAAGAACGTGCCCTCA-ATTTTA-C-ATAC-TTGTGTCGC-AC-TC-CTGACACNGTTAC-ATACAGCAATTGCGTGGATAAATTATGCCGATGTTAGTTGCGAATAGGAAATTAATAATTTACTATTACTAAAAAAACTCACATATTAAAGGAAAGACTTGATGTTGATCTCCAGTTTTTAGACTCAAGTTTTATCATTTTTCTAGTAAATATAAACNTGTCGTGTAATTAAGCG-ATTGGGAAAATCATG--TCAAAAATAACCTCACACATTTTTTTTTA-----ACTGAAACGACATTCTGCTAGTAGTTTAGAATTCG--TATN--C------------------AA---ACA--A-AAA----AT----TAA-----A-AT---------C------TAAA---CTAAANAATTGTATTTAAAAAGTGT--TGCACT-CCTGAC-ATGGAAAAGATAGCCCTATGG---GC---AAAAT-----ACAAC-TTTTT-CTGTCATC-CTTTTT--C------AA-A--TAATGT---CTTCTA---T-GCTG-CTC-TTTTG--AAAAATAAAG-AAAAGGATTA-TATT-GGTAAAGTTAATTTTT---AAT-GGTGCCAGTCAAAAGTC---GAAATGTTG-CACTCCTG----ACCATGAGGG--------GTA----------TGCTCATTAAG-----A--TT--------GACTCCCTCAAAGTTTA----CATGGATGCCAGCCGGT-----TAC--TTTTTTCTTTTATTCAACAGAAG-AGATATTGCTTTAAAAGTTTAGATTTCTTTT--G-T-----AG-TTCAA--TTGATATTATTTAATTCTCAAGA-CAC---TTT-TTGCACAAATT---GGTCAT-------TCTT--T--GTG-TTG--CACT----CCT--GA-CATGG-TACTA-CA--TTTTTTTG--AGCTGA-GA-TTAAAGCC-A--TA-TCTT--AAG-CCTNAA-GT-GTTTC-A-TCATTCTTGGAA-T---TT-AAA-AGTA-TATA--GAT-TG-AAGATTT--TT--AAA---CAACAGTAT-TCTTTTAA-TATAG-ATCTTTTT--GTTTCGA-T---AGACAGGAA-TTT-G----AAAAAA--G-TCANATT--TT-TT--AA-TGTCACAAAAAAGCGTTG-C--ACTCCTGAC-----ATTTTAGG--CGACGTTTT-AGGA-C-ACCAATCTATCA-TTCTT---TG---AG--A---TATCTCT-TA-GAT-TTTTGGAACACAC-ATAC-AC-AATATCAT-GAC-AC-AAGAT-A-TGG-----TA-TCCCTA-AAATCACCCAGACTGTTTGTAAAACATGTAAA-TTGGTCAAATA------TGCC------TTGCCTCATTTT-TTT--AAATCAC
Reference ( family-2058 ) : NAACTTTTGTCCACTTTCTGACAATATTACTATGTAGAGC-GTGGAAAGTACACAAATAAAACTTTTGGAGTATTGAAATCAAAGTGTTT-TTAGA-AAAGTAATC-GAGCAGAAAAACTGATGTTTCATCAATTTTGAGTTTGGTTGTAGAAATTTTGTATATTAGGAAAATTTTTAAATTACATAAATTCCGAATTGTCAACAACTACTCT--AGTAGTCGTTCTGGGTTTTCTTTTTTTAAATAAAGTTGCATTAGTGGATAAGAAGTCACATCC-ATGGGCATT------AAAATGCATTTGTTTTTTAATGTCAA-GAAATATCTTAAACAAA-TATCTATA---AGCTTCAGACAT-----AGTGTG-TCCTTATTCGTTTCGTGTTTTTATGCATGCATTAAAGAACATATCCTCATNTTTTA-CAACAC-TTGTGTTGC-AC-TC-CTGACACGGTTAC-ATACAGCAATTGCATGGATAAATTATGCCGATGTTAGTTGCAAATAGGAAATTAATAATTTACTATTACTAAAAAAACTCACATATTAAAGGAAAGACTTGATGTTGATCTCTAGTTTTTAGACTCAAGTTTTATCATTTTTCTAGTAAATNTAAACNTGTCGTGTAATTAAGCGGATNGGGGAAATCATGGGTCAAAAATAACCTNNCACATNTTTTNTTNTTTTTGCTGAAACGNCATTCTGCNAGTAGTTTGGAATTCG--TATN--T------------------AA---ACA--A-AAA----AT----TAA-----A-AT---------T------TAAA---CTAAANAATTGTATTTAAAAAGTGT--TGCACT-CCTGAC-ATGGAAAAGATAGCCCTNTGG---GC---AAAAT-----ACAAC-TTTTT-CTGTCGTC-CTTTTT--C------AA-G--TAATG----CTTCTA---T-GC---CTC-TTTTG--AAAAATAAAG-AAAAGGATTA-TATT-GGTAAAGTTAATTTTT---AAT-GGTGCCAGTCAAAAGTC---GAAATGTTG-CACTCCTG----ACCATGAGGG--------GTA----------TGCTCATTAAGG---CA--TT--------GACTCCCTCAAAGTTTA----CATGGATGCCAGCCAGT-----TAC--TTTTTTCTTTTATTCAACAGAAG-AGATATTGCTTTAAAAGTTTAGATTTCTTTT--G-T-----AG-TTNAA--TTGATATTATTTANTTCTCAAGA-CAC---TTT-TTGCACAAATT---GGTCAT-------TCTT--T--GTG-TTG--CACT----CCT--GA-CATGG-TACTA-CA--TTTTTTT---AGCTGA-GA-TTAAAGCC-A--TA-TCTT--AAG-CCTAAA-GT-GTTTC-A-TCATTCTTGGAA-T---TT-AAA-AGTA-TATA--GAT-TG-AAGATTT--TT--NAA---CAACAGTNT-CCTTTTAA-TNNAG-ATCTTTTT--GTTTCGA-T---AGACAGGAA-TTT-G----AAAAAA--G-NCANATT--TT-TT--AA-TGTCACAAAAAAGCGTTG-C--ACTCCTGAC-----ATTTTAGG--CGACGTTTT-AGGA-C-ACCAATCTATCA-TTCTT---TG---AG--A---TATNTCT-TA-GAT-TTTTGGAACACAC-ATAC-AC-AATATCAT-GAC-AC-AANAT-A-TGG-----TA-TCCCTA-AAATCACCCAGACTGTTTGTAAAACATGTAAATTTGGTCAAATA------TGCC------TTGCCTCATTTT-TT---AAATCAC
gi|1 : AAACAAACTATCTGTATTTAACTGCAAACATTATTCAG-GTGATC--TAC-CAATTC-TATATTTATGCATGCA-TAAAAAACGTG--GTCA-ATTTCATCA--AC-TTTTGTC-C-ACTTT-CTGACAATATTACTATGTAG-A---GCGTGGA
gi|1 : tatgAACTTTTGTCCACTTTCTGACAATATTACTATGTAGAGC-GTGGAAAGTACACAAATAAAACTTTTGGAGTATTGAAATCAAAGTGTTT-TTAGA-AAAGTAATC-GAGCAGAAAAACTGATGTTTCATCAATTTTGAGTTTGGTTGTAGAAATTTTGTATATTAGGAAAATTTTTAAATTACATAAATTCCGAATTGTCAACAACTACTCT--AGTAGTCGTTCTGGGTTTTCTTTTTTTAAATAAAGTTGCATTAGTGGATAAGAAGTCACATCC-ATGGGCATT------AAAATGCATTTGTTTTTTAATGTCAA-GAAATATCTTAAACAAA-TATCTATA---AGCTTCAGACAT-----AGTGTG-TCCTTATTCGTTTCGTGTTTTTATGCATGCATTAAAGAACATATCCTCATGTTTTA-C-ATACGTTGTGTTGTGAC-TCACTGACACAGTTAC-ATACAGCAATTACA-GGATAAATTATGCCGATGTTAGTTGCAAATAGGAAATTAATAATTTACTATTACTAAAAAAACTCACATATTAAAGGAAAGACTTGATGTTGATCTCTAGTTTTTAGACTCAAGTTTTATCATTTTTCTAGTAAATATAAACATGTCGTGTAATTAAGCAGATGAGAAAAATCATGGATCAAAAATAACCTCACACATTTTTTTTTTTTTTTACTGAAACGACATTCTGCAAGTAATTTAGAATTTG--TATG--CTATTGAATTAATTACCAGAA---ACATGATAAA----AT----TAATATTTA-ATGATAAAAAGT------TAAG---CTAAAGAATTGTATTTAAAAAGTGT--TGCACTGCCTGACGATAGAATAGATAGCTCTGTGGTAAGCTATAAAAT-----ACAACTTTTTT-CTA-CATCACTTCTTTAC------AATGT-TAATGTGTCTTTCTA---TGGCTG-CTCGTTTTGACAAAAATAAAGAAAAAGGATTATTATTAGGTAAGGTTAAATTTTCGGAATAGGTGCCAGTCAAAAGTTCAAGGAATGTTGCCACTTCCGCTGAACCATGAGGG--------GAA----------TATTCATTAAGGCTTCA--TTAGCAGTTGGACTTCCTAAAGG--TA----CATGGATGCCAGCCAGT-----TACTTTTTTTTCTTTTATTCAAGAGAAGAAGATATGGC-TTAAAAGTTTAGTTCTCTTTT--GAT-----AGTTTCAAATTTTATATTATTTATTT-TCAAGACCACTTTTTT-TTGCACAAATTG--GGTCAT-------TTTT--TGAGTG-TTG--CACTCA--CCTTGGA-CATGGTTACTA-CA--TTTTTTG---AGCTAA-GATTTAACACC-ATTTA-TCTTG-AAGCCCTAAA-GT-GTTTC-C-TCATTCTTTGAA-T---TTAAAA-AGTATTATA--GATGTG--AGATTTTCTT--TAAAACCAACAGTATATCTGTTAATTATAG-ATCTTTTT--GTTCCGATT---ATACAGGAA-TTTGG----AAAAAA--G-ACACATT--TT-TT--AATTGTCACAAAAAAGCGTTG-C--ACTCCTGAC-----ATTTTAGG--AAACTTTTTCAGGACC-ACCAATCTATCATTTCTTTG-TG---AG--A---TATCTCTGTGCGAT-TTTTGGTACACACGATACAACAAATATCATGGACAACAAAGAT-ATTGG-----TATTCCCTA-AAATCATTCA-ACTGTTTGTAAAACATG-AAATTTGGTCAAATATTGCTTTGCCCTCATGTTGCCTCATTTT-TTTTGAAACCACaagtacacaaataaaacttttggagtattgaaatcaaagtgtttttagaaaagtaatcgagcagaaaaactgatgtttcatcaattttgagtttggttgtagaaattttgtatattaggaaaatttttaaattacataaattccgaattgtcaacaactactctagtagtcgttctgggttttctttttttaaataaagttgcattagtggataagaagtcacatccatgggcattaaaatgcatttgttttttaatgtcaagaaatatcttaaacaaatatctataagcttcagacatagtgtgtccttattcgtttcgtgtttttatgcatgcattaaagaacatatcctcatgttttacatacgttgtgttgtgactcactgacacagttacatacagcaattacaggataaattatgccgatgttagttgcaaataggaaattaataatttactattactaaaaaaactcacatattaaaggaaagacttgatgttgatctctagtttttagactcaagttttatcatttttctagtaaatataaacatgtcgtgtaattaagcagatgagaaaaatcatggatcaaaaataacctcacacatttttttttttttttactgaaacgacattctgcaagtaatttagaatttgtatgctattgaattaattaccagaaacatgataaaattaatatttaatgataaaaagttaagctaaagaattgtatttaaaaagtgttgcactgcctgacgatagaatagatagctctgtggtaagctataaaatacaacttttttctacatcacttctttacaatgttaatgtgtctttctatggctgctcgttttgacaaaaataaagaaaaaggattattattaggtaaggttaaattttcggaataggtgccagtcaaaagttcaaggaatgttgccacttccgctgaaccatgaggggaatattcattaaggcttcattagcagttggacttcctaaaggtacatggatgccagccagttacttttttttcttttattcaagagaagaagatatggcttaaaagtttagttctcttttgatagtttcaaattttatattatttattttcaagaccacttttttttgcacaaattgggtcattttttgagtgttgcactcaccttggacatggttactacattttttgagctaagatttaacaccatttatcttgaagccctaaagtgtttcctcattctttgaatttaaaaagtattatagatgtgagattttctttaaaaccaacagtatatctgttaattatagatctttttgttccgattatacaggaatttggaaaaaagacacattttttaattgtcacaaaaaagcgttgcactcctgacattttaggaaactttttcaggaccaccaatctatcatttctttgtgagatatctctgtgcgatttttggtacacacgatacaacaaatatcatggacaacaaagatattggtattccctaaaatcattcaactgtttgtaaaacatgaaatttggtcaaatattgctttgccctcatgttgcctcattttttttgaaaccaccc
gi|10 : tatgaaacaaactatctgtatttaactgcaaacattattcaggtgatctaccaattctatatttatgcatgcataaaaaacgtggtcaatttcatcCAT-------TCTT--T--GCG-TTG--CACT----CCT--GA-CATGG-TCTTC-CA--TTTTTTTG--AGCTGA-GA-CTAAAGCC-A--CA-TCTT--CAG-CCTAAA-GT-GTTTC-A-TCATTCTTGGAA-T---TT-AAA-AGCA-TAAA--GAC-TG-AAGATTT--AT--ATA---CAACAGTAT-CTTTTcc
gi|11 : CTGAC-----AGTTTAGG--CAACATTTT-AGGA-C-ACCAATCTATCA-TTCTT---TG---AG--ATATTATCTCT-TA-GAT-TTTTGGAACACAT-ATA
gi|12 : aattttgagaacaaaatcacaagagtcccatttggcgccccgtaCCACAAAATTGA----TATGGTTACCAGCTGGT------AC--CCTTTTCTTT-----AACAGAAG-AGGTGTTGCTTTATAAGTTT---TTCCTTTTTCG-TACCGGAG-TTAAA--TTGATATTAT
gi|13 : ctTTTTAG--ATAA-ATATATTT--GTTTCAA-T---CGACAGGAT-TAT-G-----AAATA--G-TCATATT--TT-TT---A-TGTAACAAAA------TG-A--ACTC--AAC------TTTGAGG--TAATGTT----GGA-A-ATTAAT
gi|14 : ATGTTG-CAGTCCTA----GTCATGAGGG--------GTACATGTACTAGTACTCATTAA------A--TT--------GACTCCCACAAAGTATATAATTATGGATACCAG-CAGT-----TAT--TT
gi|15 : GTCAT-------TCTT--T--TTG-TTG--CACT----CCG--GA-CATTG-TACTA-CA--TTTTGTTG--AGCTGA-GA-TTAAAGCC-A--TA-TCTT--AAG-CCTAAA-GT-GTTTC-A-T
gi|16 : tgtatG-----TA-TCCCTA-AAATCACCAAGTCTGTTTGTAAAACGTGTACATTTGGTAAAATG------TGCC------TTGCCTCATTTT-TTTA-AAGTCAC
gi|17 : -A-TAG-----TA-TCTTTTTAAATCACCCAGACTGTTTGT--------TAAA------CAAATA------TGCC------TTGCCTCATCTTGTT---AAATCAcct
gi|2 : AACTCT-GTCTACTT-CTGACAACA--ACCACTTATAGCAGTGGAAAGGACATCAATAAT-TTTTTGGGGTATGGAAATCAA----TTTGTTAGATAAAATAATTAGAGCAGATAAACT----TTTCAACAATTTT-AGT------GTAAAAATTTTTTATATTAAGAAAAGT--------ATGCAAAT----AATTGTCAA-AA-TACTCTTAAGTAGTC-TTCTGAGTTTT----TTTTAAATACAGTTGCATTAGTGGATAA--AGTCACCTTCTATG--CATTTTTTAAAAAATGCATT-GTTTTTTAAT---AATGAAA--------ACAAC-TATCTATA---A-CTTCAGACAT-----A-TGTG-TCC--AT-CATTTC-TGTTTTTATGCAT---------------CCCTCA-ATTTTA---ATAC-TTGTGTTGC-AC-TC-CTGACACCGTTAC-ATACAGCAATTGTATGGA--AATTATGT-GA-GTTA-TTGCGA-TAGGAA--TA-TA--TTACTATTACTAAAA---CTCACATATTAAAGGAA---CTTG-------TCTTCAGTTTT-AGACTCAAGTTTTAT-ATTTTTCTA----ATAT---CTT----TGTAATTAAGCA-ATTGGGAAAATCATA--TCAAAAATAACCTCACACATTTCTTTTTA-----ACTGAAACA--AATCTGCTAGTAGTTTAGAATTCA--TATA--C------------------AA---ACA--A-AAA----AT----TAA-----A-AT---------C------TAAA---CTAAAGAATTGTATTTAAAAAGTGT--TGCACT-CCTGAC-ATGGAAAAGATAGCCCTATGG---GC---AATAT-----ACAAC-TTTTT-CTGTCATC-CTTTTTA-C------AA-AAATAATG----CTTCTAACTT-GC---CTC-TTTTG--AAAAATAAAG-AAAAGGATTA-TATT-GGTAAAGTTAATTTTT---AAT-GGTGCCAGTCAAAAGTC---AAAATGTTG-CACTCCTG----AACATGAGGG--------GTA----------TGCTCATTAA------A--TT--------GACTCCTTAAAAGTTTA----CATGGATGCCAGC-AGT-----TAC--TTTTTTCTTTTATTTAACAGAAG-AGATATTGTTTTAAAAGTTTAGATTTCTTTT--G-T-----AG-TTCAA--TTGATATTATTTAATACTCAAGA-CAT---TTT-TTGCACAAATT---GGTCAT-------TCTG--T--ATG-TTG--CACT----CCT--GA-CATGG-TACTA-CA--TTTTTTTTTTAGCTGA-GA-TTAAAGCC-A--TA-TGTT--TAG-CCTCAA-GT-GTTTC-A-TCATTCTTTGAA-T---TT-AAA-AGTA-TATA--GAT-TG-AAGATTT--TT--TAG---CAACAGTAT-TTTTTAAA-TTGAG-ATATTATT--GTTTCGA-T---AGACAAGAA-TTT-G----AAAAAA--G-ACATATT--TTTTT--AA-TGTCACAAAAAAGCGTTG-C--ACTCCTGAC-----ATTTTAGG--CAACGTTTT-AGGA-C-ACCAATCTATCA-ATCTT---TG---AG--A---TATCTCT-TG-GAG-TTTTGGAACACAC-ATAC-AC-AATATCAT-GAC-AC-AAGAT-A-TGG-----TA-TCCTTA-AAAGCACACAGACTGTTTGTAAAACATGTAAA----ATAAAATA------TGCT------TCGCCTCATATT-TT---AAACCAC
gi|3 : aATTC---CATC--T------------------AA---ACA--A-GAG----ATGTGATAA-----ATAT---------C------TAAA---TTAATTAATTGTATTTAAAAAGTAT--TGCACT-CCTGAC-ATAAAAAAGATAGCCCTTTGG---GC---AAAATTTTTTAC--T-TTTTT-CTGTCAAC-TTTTTT--TCCTCAAAA-A--TAATGT---CTTCTA---T-GTTATCTG-TTTTG--AAAA-TGAAA-AAAAAGATTA-TATT-GGTAAAGTTAATTTTG---AAT-GGTGTCTGCCAAAAGTC---AAAATGTTG-ACCTCCTG----ACTATGAAAG--------GTA----------TGCTCATTAA------A--TT--------GGCTACCTCAAAGTTTA----CATGGAGGCCAGCAGGTAAATATAC--TTTTTCCTTTTCTTGAACAGA---AGAT-----------AGTTTAGATTTCTTTT--G-T-----AG---------------TATTTAATTTTCAAAA-CAC---TTT-T-----AAA--------CA----------CT--T--GTA-TTG--CACT----CCT--GA-CATAG----TA-CA--TTTGTTT----------------GAGCC-A--TA-TCTT--AAG-CCCCAA-GT-GTTTC-A-TCATTCTTGGAA-T---TC-AAA-AGTA-TATA--AAT-TG-AAGATAT--TT--AAA---CAACAGTTT-TCTTTTAA-TATAG-ATCTTTTTTGGTTTTAA-T---AGACAGAGA-TTT-G----AAAAAA--G-TTACATT--TC-TT---A-T----------AGTGTTT-T--ACTCTTGAC-----ATTTTAAG--CGACGTTTT-AGGC-C-ACTA--CT-TCA-ATGTG---TATATAC--A---TGTATC--TA-GATGTTTTGGAACACAT-ATAC-AC-AATATCAT-GAC-TC-AACAT-A-T-G-----T--TTCCTA-AAATCCCTCAGTATGTTTGTAAGACATGTAAAATTGGTCAAATA------TATT------TTGCCTCA
gi|4 : TTTC--G-C-----AG-TTAAA--TTGATTATATTTAATTCTCAGGA-CAC---TTT-T-ACACTACTT----------------TATT--T--GAG-TT-------------T---A-CATGG-TACCA-CAATTTTTTTT---ATCTGC-GA-TTAAAGCC-A--AG-TCTT--AAT-CTTCAA-TT-TTTTC-A-CCAATGTTGGAA-T---TA-AAA-AATA-TATA--GAT-TG-ACCATTT--TT--AAA---CAACCATTT-TCTTTTAA-TATGG-ATCATTTT--CTTTTGA-T---TGACAGGAC-TTT-G----AAAAAA--G-TAAAAAT--TT------A-TGTCACAAAAATATATTG-C--ACTTCTGAT-----ATTTTTAG--CGACGTTTT-AGAA-C-ACCAATTCATCA-TTTTCGTATA---AGATA---TATATGT-TA-G-T-TATTGAAATACAC-ATAC-AC-AATATCAT-GAC-AT-AACAT-A-TGG-----TA-TACCTG-CAATCACCCATACTGTTTGTAAAAGATGTAAAGTTGGTCAAATA------CGCA------TTGCCTTGCTTC-TTG--AAATCAC
gi|5 : CTCCTG----GCCATGAGGG--------GTA----------TGCTCATTAAGA---TAAATT--------GACTTCCTCAAAGTTTA----CATGGATGCCAGCCAGT-----TAC--TTTTTTCTTTTATTCAACAGAAG-AGATACTGCTTTAAAAGTTTAGATTTCTTTT--G-T-----AG-TTCAA--TTGATATAATTTATTTCTCAAGA-CAC---TTTATTGCACAAATT---GGTCAT-------TTTT--G--GTG-TTG--CACT----CCT--GA-CATGG-TACTA-CA--TTTTTTTG--AGCTGA-GA-TTAAAGCC-A--TA-TCTTA-AAG-CCTAAAGGTGGTTTCAA-AGATTCTTTGAA-T---TT-AAAGAGTA-TA-AGTGAT-TGAAAGATTT--TTTAAAA---CAATAGTAT--CTTTTAA-TATAG-ATCTTTTT--GTTTTGA-T---AGACAGGAGTTTT-G----AAAAAA--GCTCAAATT--TT-TTAAAA-TGTCACAAAAAAGCGTTG-C--ACTCCTGAc
gi|6 : TGTAATTAAGCG-ATTGGGGAAATCATG--TCAAAAATAACCTGTCACATGTTTTGTTA-----G-TGAAAC-ACAT-CTGCTAGTAGTTTGAAATTAAAATATTAAT------------------AATTGAAA--A-AAATAATAT----TAA-----A-AT---------TCAGTGATAAAAATCTAAACTATTGAA---AAAAAATGTATTGCACT-CCTTTC-CTGGAAAACACAGTCCTATGG----C---AAAAT-----AGAAC-CTTTTGTTGTCATC-CT--------------------------------------------CTC-TTTTG--AAAAATAAAG-AAAAGGATTA-TATT-AGTAAACTTAATTTTT---AAT-GGTGCCAGTCAAAAGTC---GAAATGTTG-CACTCCTG----ACCATGACGGTTACAATTGTA----------TG-TCATT
gi|7 : catttcttACAAATTTGGGGTCATGGCCGGGTCTTGGT--GTGATTGGGCACCGGGCCTT--GATCATGG-TACTAGCA-------------GGTGAAGG-GTAAAGCCCA--TGGTCTTTGGAG-CTTCAC-GT-GTGGC-AATCATTCTTGGAAATGGGTT-AGG-AGGA----G--GAT-TG-GCGGTGT------AAATG-CAACATTTC-CCTTTTAA-TATAGGATCTT-----GTTTTGA-TGGGAGACAGGGA-AAT-GGGCAAGAAGA--G-GTGCAGTAGTT-TT--AGGTGTCTCAAAAAAGTGTTGGCGGACTCCTGAC-----ATTTTAGGAGCGATGTTTT-AGGA-C-ACCGAT
gi|8 : -TG-AAGATTT--TT--AAG---CAACAGTAC-TTTTTCAA-TATAG-ATCATTTT--GTTTTGG-T---AGACAGGAA-TTT-A----AAAAAAATG-TCAAATC--TT-TTA-AA-TGTCACAAAAAAGTGTTA-C--ACTCCTCAC-----ATTTTATA--CAACGTTTT-TGG--C-ACCAATTTATCA-TACCT---TG---AG--A---AATCTCG-TA-GAT-TTTTGGAACAAAC-ATAG-AA-AATATCGT-G
gi|9 : TTG-T--ATTCCCGACTCTTTCTTTTGG-----ACGCTTT-AAGA-CTA--AATTCATCA-TTTTG---TG---AG--G---TATATCT-TA-GAT-TTT-GGAACATAC-ATCC-A----TACCA----C-AC-CAGATTA-GGGGCATATA-TCCATA-AAATCACCCAGACCGTTTGTAAAGC
Alignments
lowQualScore : 1111111111111111111111111111111111111111111111111111111111111111111111111111111111 1111111111111111111111111111111111111111
lowQualScore : 1 1 11 1 11 2222 1 1 1 2222 1 222222 33333333 2222 1 1 11 1 2222 11 1 11 333333 1 222 1 333333 1 22222 33333333 22222 1 3333333333333333 1 22 1 1111 1 1 1 22 3333333333333 1 1 33333 222 11 11 2222222 1 1 2222 2222222222 1 11 33333 111111 3333333333333333333333333333333333333333333333333333333333333333333333333333333333 111 11 1 1 111 111 22222 1 1 1 1111111111111111111111111111111111111111 1 111 1 1 1 111 1 111 1111 222222222222222222222 555555555555555555555 1111 11111 1111111 111 1 2222 11111111 1111 11 111 11 111 11111 222 11111 111 111 111111 11111 22 111111 111111 11
lowQualScore : 5 5 88 2 1 5 1 1 66 1 3333 5 5 5 1 3333 1 5 999999 1 1 66666666 3333 5 5 88 5 4444 1 88 1 5 77 000000 5 000 5 000000 3 66666 88888888 11111 0 3 1111111111111111 3 00 7 3 6666 3 3 1 3 6 7 88 22 6666666666666 6 2 3 7 66666 111 88 11 7 4444444 0 5 5 4444 6666666666 3 88 33333 6 555555 3333333333333333333333333333333333333333333333333333333333333333333333333333333333 777 1 3 33 0 0 1 2 777 777 55555 3 0 0 3 0 44 7777777777777777777777777777777777777777 0 777 0 0 0 777 0 777 8 4444 999999999999999999999 1 999999999999999999999 1 4444 55 66666 99 11 3 0 8 3 0 5 1 0 1 99 6666666 6 2 99 0 8 444 8 0 0000 66666666 0 77777 5 66 7777 66 5 5 5 88 777 5 5 5 66 5 66 5 1 5 5 5 5 0 5 000 5 5 5 5 77 5 5 888 0 66 33 222 5 5 0 66 5 888 66 5 5 0 66 66666 66 5 000 5 0 1 6666 11111 66 1 4 4 4 5 777 000 111111 0 77 5 5 5 6 99 6 8 8 6 6 1 44444 5 5 0 6 00 999999 999999 3 11 8
lowQualScore : . . .. . . . . . .. . .... . . . . .... . . ...... . . ........ .... . . .. . .... . .. . . .. ...... . ... . ...... . ..... ........ ..... . . ................ . .. . . .... . . . . . . .. .. ............. . . . . ..... ... .. .. . ....... . . . .... .......... . .. ..... . ...... .................................................................................. ... . . .. . . . . ... ... ..... . . . . . .. ........................................ . ... . . . ... . ... . .... ..................... . ..................... . .... .. ..... .. .. . . . . . . . . . .. ....... . . .. . . ... . . .... ........ . ..... . .. .... .. . . . .. ... . . . .. . .. . . . . . . . . ... . . . . .. . . ... . .. .. ... . . . .. . ... .. . . . .. ..... .. . ... . . . .... ..... .. . . . . . ... ... ...... . .. . . . . .. . . . . . . ..... . . . . .. ...... ...... . .. .
lowQualScore : 5 5 55 5 0 5 0 0 55 0 5555 0 5 5 0 5555 0 0 555555 0 0 55555555 0000 0 0 55 0 0000 0 00 0 5 55 555555 5 555 5 000000 3 33333 33333333 00000 7 3 7777777777777777 3 00 3 3 0000 3 3 0 3 7 3 00 77 7777777777777 7 3 3 3 00000 777 33 00 3 7777777 7 3 0 0000 5555555555 3 33 33333 7 333333 0000000000000000000000000000000000000000000000000000000000000000000000000000000000 555 0 2 88 0 0 2 5 555 555 00000 2 0 0 2 0 00 5555555555555555555555555555555555555555 0 000 0 0 0 555 0 555 0 2222 777777777777777777777 0 000000000000000000000 4 2222 88 77777 22 44 2 8 0 8 6 6 0 8 0 22 8888888 7 5 22 8 0 000 0 6 8888 44444444 2 88888 0 99 5555 99 0 0 0 22 000 0 0 0 99 0 99 0 0 0 0 0 0 7 7 000 7 7 7 1 99 0 0 888 4 99 88 888 0 0 4 99 0 888 99 0 0 1 99 22222 00 0 000 0 1 1 9999 11111 11 7 4 4 4 7 999 000 000000 7 11 7 7 7 7 22 7 0 0 7 7 0 33333 7 7 7 7 77 222222 222222 8 00 0
consensus : NAACTCTTGTCCACTTTCTGACAACATTACCACGTANAGCAGTGGAAAGNACACNAATAANACTTTTGGGGTATNGAAATCAAAGTGTTTGTTAGATAAAGTAATCAGAGCAGANAAACTGATGTTTCANCAATTTTGAGTTTGGTTGTAGAAATTTTNTATATTAGGAAAANTTTTAAATTACGCAAATTCCGAATTGTCAACAACTACTCTTAAGTAGTCGTTCTGGGTTTTCTTTTTTTAAATANAGTTGCATTAGTGGATAAGAAGTCACNTCCTATGGGCATTTTTTAAAAAATGCATTTGTTTTTTAATGTCAATGAAATATCTTAAACAAA-TATCTATA---AGCTTCAGACAT-----AGTGTGTCCT-AT-CGTTTC-TGTTTTTATGCATGCAT-AAAGAACGTGCCCTCA-ATTTTA-CATAC-TTGTGTCGC-AC-TC-CTGACACNGTTAC-ATACAGCAATTGCGTGGA-AAATTACGC-GATG----TTA-TTGCGAGTA-GGAAATTAATA--TTACTATTACTAAAAAA-CTCACGTATTAAAG--GAAAGACTTGATGTT--TCTTCAGTTTT-AGACTCAAGTTTTATCATTTTTCTAGTAAATATAAACNTGTCGTGTAATTAAGC-GATTGGGAAAATCATG--TCAAAAATAACCTCACACA-----TTTTTTTTTAACTGAAACGACATTCTGCTAGTAGTTTAGAATT--CGTATNC------------------A-AAC--A--A-AAA------AT----TAA-----A-AT---------C------TAAA---CTAAANAATTGTATTTAAAAA--GTGTTGCACT-CCTGAC-ATGGAAAAGATAGCCCTATGG---GC---AAAAT-----ACAAC-TTTTT-CTGTCATC-CTTTTT-T------A-AA-G-TAATGT---CTTCTA---T-GCTG-CTC-TTTTG--AAAAATAAAG-AAAAGGATTA-TATT-GGTAAAGTTAATTTTT---AAT-GGTGCCAGTCAAAAGTC---GAAATGTTG-CACTCCTG----ACCATGAGGG--------GTA----------TGCTCATTAAG-----AT----T--------GACTCCCTCAAAGTTTA----CATGGATGCCAGCCGGT-----TAC--TTTTTTCTTTTATTCAACAGAAG-AGATATTGCTTTAAAAGTTTAGATTTCTTTT--G-T-----AG-TTCAA--TTGATATTATTTAATTCTCAAGA-CAC---TTT-TTGCACAAATT---GGTCAT-------TCTT--T--GTG-TTG--CACT----CCT--GA-CATGG-TACTA-CA-TTTTTTTG--AGCTGA-GA-TTAAAGCC-A--TA-TCTT--AAG-CCTNAA-GT-GTTTC-A-TCATTCTTGGAA-T---TT-AAA-AGTA-TATA--GAT-TG-AAGATT---TTT--AAA--CAACAGTAT-TCTTTTAA-TATAG-ATCTTTTT--GTTTCGA-T---AGACAGG--AA-TTT-GAAAAAA--G---T-CAN-ATTTT-TT--AA-TGTCACAAAAAAGCGTTG-C--ACTCCTGAC-----ATTTTAGG--CGACGTTTT-AGGA-C-ACCAATCTATCA-TTCTT---TG---AG--A---TATCTCT-TA-GAT-TTTTGGAACACAC-ATAC-AC-AATATCAT-GAC-AC-AAGAT-A-TGG-----TA-TCCCTA-AAATCACCCAGACTGTTTGTAAAACATGT-AAA-TTGGTCAAATA------TGCC------TTGCCTCATTTTTTT--AAA-TCAC
Reference ( family-2058 ) : NAACTCTTGTCCACTTTCTGACAACATTACCACGTANAGCAGTGGAAAGNACACNAATAANACTTTTGGGGTATNGAAATCAAAGTGTTTGTTAGATAAAGTAATCAGAGCAGANAAACTGATGTTTCANCAATTTTGAGTTTGGTTGTAGAAATTTTNTATATTAGGAAAANTTTTAAATTACGCAAATTCCGAATTGTCAACAACTACTCTTAAGTAGTCGTTCTGGGTTTTCTTTTTTTAAATANAGTTGCATTAGTGGATAAGAAGTCACNTCCTATGGGCATTTTTTAAAAAATGCATTTGTTTTTTAATGTCAATGAAATATCTTAAACAAA-TATCTATA---AGCTTCAGACAT-----AGTGTGTCCT-AT-CGTTTC-TGTTTTTATGCATGCAT-AAAGAACGTGCCCTCA-ATTTTA-CATAC-TTGTGTCGC-AC-TC-CTGACACNGTTAC-ATACAGCAATTGCGTGGATAAATTATGCCGATG----TTAGTTGCGAATA-GGAAATTAATAATTTACTATTACTAAAAAAACTCACATATTAAAG--GAAAGACTTGATGTTGATCTCCAGTTTTTAGACTCAAGTTTTATCATTTTTCTAGTAAATATAAACNTGTCGTGTAATTAAGC-GATTGGGAAAATCATG--TCAAAAATAACCTCACACA-----TTTTTTTTTAACTGAAACGACATTCTGCTAGTAGTTTAGAATT--CGTATNC------------------A-AAC--A--A-AAA------AT----TAA-----A-AT---------C------TAAA---CTAAANAATTGTATTTAAAAA--GTGTTGCACT-CCTGAC-ATGGAAAAGATAGCCCTATGG---GC---AAAAT-----ACAAC-TTTTT-CTGTCATC-CTTTTT-C------A-AA---TAATGT---CTTCTA---T-GCTG-CTC-TTTTG--AAAAATAAAG-AAAAGGATTA-TATT-GGTAAAGTTAATTTTT---AAT-GGTGCCAGTCAAAAGTC---GAAATGTTG-CACTCCTG----ACCATGAGGG--------GTA----------TGCTCATTAAG-----AT----T--------GACTCCCTCAAAGTTTA----CATGGATGCCAGCCGGT-----TAC--TTTTTTCTTTTATTCAACAGAAG-AGATATTGCTTTAAAAGTTTAGATTTCTTTT--G-T-----AG-TTCAA--TTGATATTATTTAATTCTCAAGA-CAC---TTT-TTGCACAAATT---GGTCAT-------TCTT--T--GTG-TTG--CACT----CCT--GA-CATGG-TACTA-CA-TTTTTTTG--AGCTGA-GA-TTAAAGCC-A--TA-TCTT--AAG-CCTNAA-GT-GTTTC-A-TCATTCTTGGAA-T---TT-AAA-AGTA-TATA--GAT-TG-AAGATT---TTT--AAA--CAACAGTAT-TCTTTTAA-TATAG-ATCTTTTT--GTTTCGA-T---AGACAGG--AA-TTT-GAAAAAA--G---T-CAN-ATTTT-TT--AA-TGTCACAAAAAAGCGTTG-C--ACTCCTGAC-----ATTTTAGG--CGACGTTTT-AGGA-C-ACCAATCTATCA-TTCTT---TG---AG--A---TATCTCT-TA-GAT-TTTTGGAACACAC-ATAC-AC-AATATCAT-GAC-AC-AAGAT-A-TGG-----TA-TCCCTA-AAATCACCCAGACTGTTTGTAAAACATGT-AAA-TTGGTCAAATA------TGCC------TTGCCTCATTTTTTT--AAA-TCAC
gi|1 : AAACAAACTATCTGTATTTAACTGCAAACATTATTCAG-GTGATCT-AC-CAATTC-TATATTTATGCATGCAT-AAAAAACGTG--GTCA-ATTTCATCA-AC-TTTTGTC-C-ACTTT-CTGACAATATTACTATGTAG-A---GCGTGG--AAAGTACACAAATAAAACTT--TTG-GAGTATTGAAATCAA------AGTGTTTTTAGAAAA------GTAATCGAGCAGAAAAAC-TGATGTT--TCATCAATTTTGAG
gi|1 : tatgAACTTTTGTCCACTTTCTGACAATATTACTATGTAGAGC-GTGGAAAGTACACAAATAAAACTTTTGGAGTATTGAAATCAAAGTGTTT-TTAGA-AAAGTAATC-GAGCAGAAAAACTGATGTTTCATCAATTTTGAGTTTGGTTGTAGAAATTTTGTATATTAGGAAAATTTTTAAATTACATAAATTCCGAATTGTCAACAACTACTCT--AGTAGTCGTTCTGGGTTTTCTTTTTTTAAATAAAGTTGCATTAGTGGATAAGAAGTCACATCC-ATGGGCATT------AAAATGCATTTGTTTTTTAATGTCAA-GAAATATCTTAAACAAA-TATCTATA---AGCTTCAGACAT-----AGTGTGTCCTTATTCGTTTCGTGTTTTTATGCATGCATTAAAGAACATATCCTCATGTTTTA-CATACGTTGTGTTGTGAC-TCACTGACACAGTTAC-ATACAGCAATTACA-GGATAAATTATGCCGATG----TTAGTTGCAAATA-GGAAATTAATAATTTACTATTACTAAAAAAACTCACATATTAAAG--GAAAGACTTGATGTTGATCTCTAGTTTTTAGACTCAAGTTTTATCATTTTTCTAGTAAATATAAACATGTCGTGTAATTAAGCAGATGAGAAAAATCATGGATCAAAAATAACCTCACACATTTTTTTTTTTTTTTACTGAAACGACATTCTGCAAGTAATTTAGAATT--TGTATGCTATTGAATTAATTACCAGA-AAC--ATGATAAA------AT----TAATATTTA-ATGATAAAAAGT------TAAG---CTAAAGAATTGTATTTAAAAA--GTGTTGCACTGCCTGACGATAGAATAGATAGCTCTGTGGTAAGCTATAAAAT-----ACAACTTTTTT-CTA-CATCACTTCTT-T------ACAATGTTAATGTGTCTTTCTA---TGGCTG-CTCGTTTTGACAAAAATAAAGAAAAAGGATTATTATTAGGTAAGGTTAAATTTTCGGAATAGGTGCCAGTCAAAAGTTCAAGGAATGTTGCCACTTCCGCTGAACCATGAGGG--------GAA----------TATTCATTAAGGCTTCAT----TAGCAGTTGGACTTCCTAAAGG--TA----CATGGATGCCAGCCAGT-----TACTTTTTTTTCTTTTATTCAAGAGAAGAAGATATGGC-TTAAAAGTTTAGTTCTCTTTT--GAT-----AGTTTCAAATTTTATATTATTT-ATTTTCAAGACCACTTTTTT-TTGCACAAATTG--GGTCAT-------TTTT--TGAGTG-TTG--CACTCA--CCTTGGA-CATGGTTACTA-CA--TTTTTTG--AGCTAA-GATTTAACACC-ATTTA-TCTTG-AAGCCCTAAA-GT-GTTTC-C-TCATTCTTTGAA-T---TTAAAA-AGTATTATA--GATGTG--AGATTTTCTTT--AAAACCAACAGTATATCTGTTAATTATAG-ATCTTTTT--GTTCCGATT---ATACAGG--AA-TTTGGAAAAAA--G---A-CAC-ATTTT-TT--AATTGTCACAAAAAAGCGTTG-C--ACTCCTGAC-----ATTTTAGG--AAACTTTTTCAGGACC-ACCAATCTATCATTTCTTTG-TG---AG--A---TATCTCTGTGCGAT-TTTTGGTACACACGATACAACAAATATCATGGACAACAAAGAT-ATTGG-----TATTCCCTA-AAATCATTCA-ACTGTTTGTAAAACATGA-AAT-TTGGTCAAATATTGCTTTGCCCTCATGTTGCCTCATTTTTTTTGAAA-CCACtttggttgtagaaattttgtatattaggaaaatttttaaattacataaattccgaattgtcaacaactactctagtagtcgttctgggttttctttttttaaataaagttgcattagtggataagaagtcacatccatgggcattaaaatgcatttgttttttaatgtcaagaaatatcttaaacaaatatctataagcttcagacatagtgtgtccttattcgtttcgtgtttttatgcatgcattaaagaacatatcctcatgttttacatacgttgtgttgtgactcactgacacagttacatacagcaattacaggataaattatgccgatgttagttgcaaataggaaattaataatttactattactaaaaaaactcacatattaaaggaaagacttgatgttgatctctagtttttagactcaagttttatcatttttctagtaaatataaacatgtcgtgtaattaagcagatgagaaaaatcatggatcaaaaataacctcacacatttttttttttttttactgaaacgacattctgcaagtaatttagaatttgtatgctattgaattaattaccagaaacatgataaaattaatatttaatgataaaaagttaagctaaagaattgtatttaaaaagtgttgcactgcctgacgatagaatagatagctctgtggtaagctataaaatacaacttttttctacatcacttctttacaatgttaatgtgtctttctatggctgctcgttttgacaaaaataaagaaaaaggattattattaggtaaggttaaattttcggaataggtgccagtcaaaagttcaaggaatgttgccacttccgctgaaccatgaggggaatattcattaaggcttcattagcagttggacttcctaaaggtacatggatgccagccagttacttttttttcttttattcaagagaagaagatatggcttaaaagtttagttctcttttgatagtttcaaattttatattatttattttcaagaccacttttttttgcacaaattgggtcattttttgagtgttgcactcaccttggacatggttactacattttttgagctaagatttaacaccatttatcttgaagccctaaagtgtttcctcattctttgaatttaaaaagtattatagatgtgagattttctttaaaaccaacagtatatctgttaattatagatctttttgttccgattatacaggaatttggaaaaaagacacattttttaattgtcacaaaaaagcgttgcactcctgacattttaggaaactttttcaggaccaccaatctatcatttctttgtgagatatctctgtgcgatttttggtacacacgatacaacaaatatcatggacaacaaagatattggtattccctaaaatcattcaactgtttgtaaaacatgaaatttggtcaaatattgctttgccctcatgttgcctcattttttttgaaaccaccc
gi|10 : tatgaaacaaactatctgtatttaactgcaaacattattcaggtgatctaccaattctatatttatgcatgcataaaaaacgtggtcaatttcatcCAT-------TCTT--T--GCG-TTG--CACT----CCT--GA-CATGG-TCTTC-CA-TTTTTTTG--AGCTGA-GA-CTAAAGCC-A--CA-TCTT--CAG-CCTAAA-GT-GTTTC-A-TCATTCTTGGAA-T---TT-AAA-AGCA-TAAA--GAC-TG-AAGATT---TAT--ATA--CAACAGTA--TCTTTTcc
gi|11 : CTGAC-----AGTTTAGG--CAACATTTT-AGGA-C-ACCAATCTATCA-TTCTT---TG---AG--ATATTATCTCT-TA-GAT-TTTTGGAACACAT-ATA
gi|12 : aattttgagaacaaaatcacaagagtcccatttggcgccccgtaCCACAAAATTGA----TATGGTTACCAGCTGGT------AC--CCTTTTCTTT-----AACAGAAG-AGGTGTTGCTTTATAAGTTT---TTCCTTTTTCG-TACCGGAG-TTAAA--TTGATATTAT
gi|13 : ctTTTTAG--ATAA-ATATATTT--GTTTCAA-T---CGACAGG--AT-TAT-G-AAATA--G---T-CAT-ATTTT-TT---A-TGTAACAAAA------TG-A--ACTC--AAC------TTTGAGG--TAATGTT----GGA-A-ATTAAT
gi|14 : ATGTTG-CAGTCCTA----GTCATGAGGG--------GTACATGTACTAGTACTCATTAA------AT----T--------GACTCCCACAAAGTATATAATTATGGATACCAG-CAGT-----TAT--TT
gi|15 : GTCAT-------TCTT--T--TTG-TTG--CACT----CCG--GA-CATTG-TACTA-CA-TTTTGTTG--AGCTGA-GA-TTAAAGCC-A--TA-TCTT--AAG-CCTAAA-GT-GTTTC-A-T
gi|16 : tgtatG-----TA-TCCCTA-AAATCACCAAGTCTGTTTGTAAAACGTGT-ACATTTGGTAAAATG------TGCC------TTGCCTCATTTTTTT--AAAGTCAC
gi|17 : -A-TAG-----TA-TCTTTTTAAATCACCCAGACTGTTTGT--------T-AAA------CAAATA------TGCC------TTGCCTCATCTTGTT--AAA-TCAcct
gi|2 : AACTCT-GTCTACTT-CTGACAACA--ACCACTTATAGCAGTGGAAAGGACATCAATAAT-TTTTTGGGGTATGGAAATCAA----TTTGTTAGATAAAATAATTAGAGCAGATAAACT----TTTCAACAATTTT-AGT------GTAAAAATTTTTTATATTAAGAAAAGT--------ATGCAAAT----AATTGTCAA-AA-TACTCTTAAGTAGTC-TTCTGAGTTTT----TTTTAAATACAGTTGCATTAGTGGATAA--AGTCACCTTCTATG--CATTTTTTAAAAAATGCATT-GTTTTTTAAT---AATGAAA--------ACAAC-TATCTATA---A-CTTCAGACAT-----A-TGTGTCC--AT-CATTTC-TGTTTTTATGCAT---------------CCCTCA-ATTTTA--ATAC-TTGTGTTGC-AC-TC-CTGACACCGTTAC-ATACAGCAATTGTATGGA--AATTATGT-GA-G----TTA-TTGCGA-TA-GGAA--TA-TA--TTACTATTACTAAAA---CTCACATATTAAAG--GAA---CTTG-------TCTTCAGTTTT-AGACTCAAGTTTTAT-ATTTTTCTA----ATAT---CTT----TGTAATTAAGC-AATTGGGAAAATCATA--TCAAAAATAACCTCACACA-----TTTCTTTTTAACTGAAACAA-AT-CTGCTAGTAGTTTAGAATT--CATATAC------------------A-AAC--A--A-AAA------AT----TAA-----A-AT---------C------TAAA---CTAAAGAATTGTATTTAAAAA--GTGTTGCACT-CCTGAC-ATGGAAAAGATAGCCCTATGG---GC---AATAT-----ACAAC-TTTTT-CTGTCATC-CTTTTTAC------A-AAAA-TAATG----CTTCTAACTT-GC---CTC-TTTTG--AAAAATAAAG-AAAAGGATTA-TATT-GGTAAAGTTAATTTTT---AAT-GGTGCCAGTCAAAAGTC---AAAATGTTG-CACTCCTG----AACATGAGGG--------GTA----------TGCTCATTAA------AT----T--------GACTCCTTAAAAGTTTA----CATGGATGCCAGC-AGT-----TAC--TTTTTTCTTTTATTTAACAGAAG-AGATATTGTTTTAAAAGTTTAGATTTCTTTT--G-T-----AG-TTCAA--TTGATATTATTTAATACTCAAGA-CAT---TTT-TTGCACAAATT---GGTCAT-------TCTG--T--ATG-TTG--CACT----CCT--GA-CATGG-TACTA-CA-TTTTTTTTTTAGCTGA-GA-TTAAAGCC-A--TA-TGTT--TAG-CCTCAA-GT-GTTTC-A-TCATTCTTTGAA-T---TT-AAA-AGTA-TATA--GAT-TG-AAGATT---TTT--TAG--CAACAGTAT-TTTTTAAA-TTGAG-ATATTATT--GTTTCGA-T---AGACAAG--AA-TTT-GAAAAAA--G---A-CAT-ATTTTTTT--AA-TGTCACAAAAAAGCGTTG-C--ACTCCTGAC-----ATTTTAGG--CAACGTTTT-AGGA-C-ACCAATCTATCA-ATCTT---TG---AG--A---TATCTCT-TG-GAG-TTTTGGAACACAC-ATAC-AC-AATATCAT-GAC-AC-AAGAT-A-TGG-----TA-TCCTTA-AAAGCACACAGACTGTTTGTAAAACATGT-AAA----ATAAAATA------TGCT------TCGCCTCA-TATTTT--AAA-CCAC
gi|3 : aATT--C-CATCT------------------A-AAC--A--A-GAG------ATGTGATAA-----ATAT---------C------TAAA---TTAATTAATTGTATTTAAAAA--GTATTGCACT-CCTGAC-ATAAAAAAGATAGCCCTTTGG---GC---AAAATTTTTTAC--T-TTTTT-CTGTCAAC-TTTTTT-TCCTCAAA-AA---TAATGT---CTTCTA---T-GTTATCTG-TTTTG---AAAATGAAA-AAAAAGATTA-TATT-GGTAAAGTTAATTTTG---AAT-GGTGTCTGCCAAAAGTC---AAAATGTTG-ACCTCCTG----ACTATGAAAG--------GTA----------TGCTCATTAA------AT----T--------GGCTACCTCAAAGTTTA----CATGGAGGCCAGCAGGTAAATATAC--TTTTTCCTTTTCTTGAACAGA---AGAT-----------AGTTTAGATTTCTTTT--G-T-----AG---------------TATTTAATTTTCAAAA-CAC---TTT-T-----AAA--------CA----------CT--T--GTA-TTG--CACT----CCT--GA-CATAG----TA-CA-TTTGTTTG----------------AGCC-A--TA-TCTT--AAG-CCCCAA-GT-GTTTC-A-TCATTCTTGGAA-T---TC-AAA-AGTA-TATA--AAT-TG-AAGATA---TTT--AAA--CAACAGTTT-TCTTTTAA-TATAG-ATCTTTTTTGGTTTTAA-T---AGACAGA--GA-TTT-GAAAAAA--G---T-TAC-ATTTC-TT---A-T----------AGTGTTT-T--ACTCTTGAC-----ATTTTAAG--CGACGTTTT-AGGC-C-ACTA--CT-TCA-ATGTG---TATATAC--A---TGTATC--TA-GATGTTTTGGAACACAT-ATAC-AC-AATATCAT-GAC-TC-AACAT-A-T-G-----T--TTCCTA-AAATCCCTCAGTATGTTTGTAAGACATGTAAAA-TTGGTCAAATA------TATT------TTGCCTCA
gi|4 : TTTC--G-C-----AG-TTAAA--TTGATTATATTTAATTCTCAGGA-CAC---TTT-T-ACACTACTT----------------TATT--T--GAG-TT-------------T---A-CATGG-TACCA-CAATTTTTTTT--ATCTGC-GA-TTAAAGCC-A--AG-TCTT--AAT-CTTCAA-TT-TTTTC-A-CCAATGTTGGAA-T---TA-AAA-AATA-TATA--GAT-TG-ACCATT---TTT--AAA--CAACCATTT-TCTTTTAA-TATGG-ATCATTTT--CTTTTGA-T---TGACAGG--AC-TTT-GAAAAAA--G---T-AAA-AATTT------A-TGTCACAAAAATATATTG-C--ACTTCTGAT-----ATTTTTAG--CGACGTTTT-AGAA-C-ACCAATTCATCA-TTTTCGTATA---AGATA---TATATGT-TA-G-T-TATTGAAATACAC-ATAC-AC-AATATCAT-GAC-AT-AACAT-A-TGG-----TA-TACCTG-CAATCACCCATACTGTTTGTAAAAGATGT-AAAGTTGGTCAAATA------CGCA------TTGCCTTGCTTCTTG--AAA-TCAC
gi|5 : CTCCTG----GCCATGAGGG--------GTA----------TGCTCATTAAG-----ATAAATT--------GACTTCCTCAAAGTTTA----CATGGATGCCAGCCAGT-----TAC--TTTTTTCTTTTATTCAACAGAAG-AGATACTGCTTTAAAAGTTTAGATTTCTTTT--G-T-----AG-TTCAA--TTGATATAATTTATTTCTCAAGA-CAC---TTTATTGCACAAATT---GGTCAT-------TTTT--G--GTG-TTG--CACT----CCT--GA-CATGG-TACTA-CA-TTTTTTTG--AGCTGA-GA-TTAAAGCC-A--TA-TCTTA-AAG-CCTAAAGGTGGTTTCAA-AGATTCTTTGAA-T---TT-AAAGAGTA-TA-AGTGAT-TGAAAGATT---TTTTAAAA--CAATAGTA--TCTTTTAA-TATAG-ATCTTTTT--GTTTTGA-T---AGACAGG--AGTTTT-GAAAAAA--GC--T-CAA-ATTTT-TTAAAA-TGTCACAAAAAAGCGTTG-C--ACTCCTGAc
gi|6 : TGTAATTAAGC-GATTGGGGAAATCATG--TCAAAAATAACCTGTCACA-----TGTTTTGTTAG-TGAAAC-ACA-TCTGCTAGTAGTTTGAAATTAAAATATTA------------------ATAATTGA--A-AAAAATAATAT----TAA-----A-AT---------TCAGTGATAAAAATCTAAACTATTGAA---AAAAAATGTATTGCACT-CCTTTC-CTGGAAAACACAGTCCTAT-G---GC---AAAAT-----AGAAC-CTTTTGTTGTCATC-CT--------------------------------------------CTC-TTTTG--AAAAATAAAG-AAAAGGATTA-TATT-AGTAAACTTAATTTTT---AAT-GGTGCCAGTCAAAAGTC---GAAATGTTG-CACTCCTG----ACCATGACGGTTACAATTGTA----------TG-TCATT
gi|7 : catttcttACAAATTTGGGGTCATGGCCGGGTCTTGGT--GTGATTGGGCACCGGGCCTT--GATCATGG-TACTAGCA------------GGTGAAGG-GTAAAGCCCA--TGGTCTTTGGAG-CTTCAC-GT-GTGGC-AATCATTCTTGGAAATGGGTT-AGG-AGGA----G--GAT-TG-GCGGTG---T----AAATGCAACATTTC-CCTTTTAA-TATAGGATCTT-----GTTTTGA-TGGGAGACAGGGAAA-TGG-GCAAGAA--GAGGTGCAGTAGTTT-TA--GG-TGTCTCAAAAAAGTGTTGGCGGACTCCTGAC-----ATTTTAGGAGCGATGTTTT-AGGA-C-ACCGAT
gi|8 : -TG-AAGATT---TTT--AAG--CAACAGTAC-TTTTTCAA-TATAG-ATCATTTT--GTTTTGG-T---AGACAGG--AA-TTT-AAAAAAAATG---T-CAA-ATCTT-TTA-AA-TGTCACAAAAAAGTGTTA-C--ACTCCTCAC-----ATTTTATA--CAACGTTTT-TGG--C-ACCAATTTATCA-TACCT---TG---AG--A---AATCTCG-TA-GAT-TTTTGGAACAAAC-ATAG-AA-AATATCGT-G
gi|9 : TTG-T--ATTCCCGACTCTTTCTTTTGG-----ACGCTTT-AAGA-CTA--AATTCATCA-TTTTG---TG---AG--G---TATATCT-TA-GAT-TTT-GGAACATAC-ATCC-A----TACCA----C-AC-CAGATTA-GGGGCATATA-TCCATA-AAATCACCCAGACCGTTTGTAAAGC
Alignments
lowQualScore : 1111111111111111111111111111111111111111111111111111111111111111111111111111111111 11111111111111111111111111111111111111
lowQualScore : 1 1 11 1 11 2222 1 1 1 2222 1 222222 33333333 2222 1 1 11 1 2222 11 1 11 333333 1 222 1 333333 1 22222 33333333 2222 1 3333333333333333 1 22 1 1111 1 1 1 1 11 444444444444444 1 1 33333 1 111 11 11 2222222 1 1 2222 2222222222 1 11 33333 111111 3333333333333333333333333333333333333333333333333333333333333333333333333333333333 111 11 1 1 111 111 22222 1 1 1 00000000000000000000000000000000000000 1 111 1 1 1 111 1 111 1111 222222222222222222222 555555555555555555555 1111 11111 1111111 111 1 2222 11111111 1111 11 111 11 111 11111 222 11111 111 111 111111 11111 22 111111 111111 11
lowQualScore : 5 5 88 2 1 5 1 1 66 1 3333 5 5 5 1 3333 1 5 999999 1 1 66666666 3333 5 5 88 5 4444 1 88 1 5 77 000000 5 000 5 000000 3 66666 88888888 5555 0 3 1111111111111111 3 00 7 3 6666 3 3 1 3 6 7 88 3 99 0 222222222222222 6 2 3 7 22222 3 333 0 88 11 7 1111111 3 5 4444 6666666666 3 88 33333 6 555555 3333333333333333333333333333333333333333333333333333333333333333333333333333333333 777 1 3 33 0 0 1 2 777 777 55555 3 0 0 3 0 44 77777777777777777777777777777777777777 0 777 0 0 0 777 0 777 8 4444 999999999999999999999 1 999999999999999999999 1 4444 55 66666 99 11 3 0 8 3 0 5 1 0 1 99 6666666 6 2 99 0 8 444 8 0 0000 66666666 0 77777 5 66 7777 66 5 5 5 88 777 5 5 5 66 5 66 5 1 5 5 5 5 0 5 000 5 5 5 5 77 5 5 888 0 66 33 222 5 5 0 66 5 888 66 5 5 0 66 66666 66 5 000 5 0 1 6666 11111 66 1 4 4 4 5 777 000 111111 0 77 5 5 5 6 99 6 8 8 6 6 1 44444 5 5 0 6 00 999999 999999 3 11 8
lowQualScore : . . .. . . . . . .. . .... . . . . .... . . ...... . . ........ .... . . .. . .... . .. . . .. ...... . ... . ...... . ..... ........ .... . . ................ . .. . . .... . . . . . . .. . .. . ............... . . . . ..... . ... . .. .. . ....... . . .... .......... . .. ..... . ...... .................................................................................. ... . . .. . . . . ... ... ..... . . . . . .. ...................................... . ... . . . ... . ... . .... ..................... . ..................... . .... .. ..... .. .. . . . . . . . . . .. ....... . . .. . . ... . . .... ........ . ..... . .. .... .. . . . .. ... . . . .. . .. . . . . . . . . ... . . . . .. . . ... . .. .. ... . . . .. . ... .. . . . .. ..... .. . ... . . . .... ..... .. . . . . . ... ... ...... . .. . . . . .. . . . . . . ..... . . . . .. ...... ...... . .. .
lowQualScore : 5 5 55 5 0 5 0 0 55 0 5555 0 5 5 0 5555 0 0 555555 0 0 55555555 0000 0 0 55 0 0000 0 00 0 5 55 555555 5 555 5 000000 3 33333 33333333 0000 7 3 7777777777777777 3 00 3 3 0000 3 3 0 3 7 3 00 3 77 7 000000000000000 7 0 3 3 00000 3 000 7 33 00 3 0000000 3 0 0000 5555555555 3 33 33333 7 333333 0000000000000000000000000000000000000000000000000000000000000000000000000000000000 555 0 2 88 0 0 2 5 555 555 00000 2 0 0 2 0 00 22222222222222222222222222222222222222 0 000 0 0 0 555 0 555 0 2222 777777777777777777777 0 000000000000000000000 4 2222 88 77777 22 44 2 8 0 8 6 6 0 8 0 22 8888888 7 5 22 8 0 000 0 6 8888 44444444 2 88888 0 99 5555 99 0 0 0 22 000 0 0 0 99 0 99 0 0 0 0 0 0 7 7 000 7 7 7 1 99 0 0 888 4 99 88 888 0 0 4 99 0 888 99 0 0 1 99 22222 00 0 000 0 1 1 9999 11111 11 7 4 4 4 7 999 000 000000 7 11 7 7 7 7 22 7 0 0 7 7 0 33333 7 7 7 7 77 222222 222222 8 00 0
consensus : NAACTCTTGTCCACTTTCTGACAACATTACCACGTANAGCAGTGGAAAGNACACNAATAANACTTTTGGGGTATNGAAATCAAAGTGTTTGTTAGATAAAGTAATCAGAGCAGANAAACTGATGTTTCANCAATTTTGAGTTTGGTTGTAGAAATTTTNTATATTAGGAAAANTTTTAAATTACGCAAATTCCGAATTGTCAACAACTACTCTTAAGTAGTCGTTCTGGGTTTTCTTTTTTTAAATANAGTTGCATTAGTGGATAAGAAGTCACNTCCTATGGGCATTTTTTAAAAAATGCATTTGTTTTTTAATGTCAATGAAATATCTTAAACAAA-TATCTATA---AGCTTCAGACAT-----AGTGTGTCC-TA-TCGTTTC-TGTTTTTATGCATGCA-TAAAGAACGTGCCCTCA-ATTTTA-CATAC-TTGTGTCGC-AC-TC-CTGACACNGTTAC-ATACAGCAATTGCGTGGA-AAGTTACG-C-GATG----TTA-TTGCGAGTA-GGAAATTAATA--TTACTATTACT-AAAAAACTCACGTATTAAAG--GAAAGACTTGATGTT--TCTTCAG-TTTTAGACTCAAGTTTTATCATTTTTCTAGTAAATATAAACNTGTCGTGTAATTAAGC-GATTGGGAAAATCATG--TCAAAAATAACCTCACACA-----TTTTTTTTTAACTGAAACGACATTCTGCTAGTAGTTTAGAATT--CGTATNC------------------A-AAC--A--A-AAA------AT----TAA-----A-AT---------C------TAAA---CTAAANAATTGTATTTAAAAA--GTGTTGCACT-CCTGAC-ATGGAAAAGATAGCCCTATGG---GC---AAAAT-----ACAAC-TTTTT-CTGTCATC-CTTTTTTC----AAAA---TAATGT---CTTCTA---T-GCTG-CTC-TTTTG--AAAAATAAAG-AAAAGGATTA-TATT-GGTAAAGTTAATTTTT---AAT-GGTGCCAGTCAAAAGTC---GAAATGTTG-CACTCCTG----ACCATGAGGG--------GTA----------TGCTCATTAAG-----AT----T--------GACTCCCTCAAAGTTTA----CATGGATGCCAGCCGGT-----TAC--TTTTTTCTTTTATTCAACAGAAG-AGATATTGCTTTAAAAGTTTAGATTTCTTTT--G-T-----AG-TTCAA--TTGATATTATTTAATTCTCAAGA-CAC---TTT-TTGCACAAATT---GGTCAT-------TCTT--T--GTG-TTG--CACT----CCT--GA-CATGG-TACTA-CA-TTTTTTTG--AGCTGA-GA-TTAAAGCC-A--TA-TCTT--AAG-CCTNAA-GT-GTTTC-A-TCATTCTTGGAA-T---TT-AAA-AGTA-TATA--GAT-TG-AAGATT---TTT--AAA--CAACAGTAT-TCTTTTAA-TATAG-ATCTTTTT--GTTTCGA-T---AGACAGG--AA-TTT-GAAAAAA--G---T-CAN-ATTTT-TT--AA-TGTCACAAAAAAGCGTTG-C--ACTCCTGAC-----ATTTTAGG--CGACGTTTT-AGGA-C-ACCAATCTATCA-TTCTT---TG---AG--A---TATCTCT-TA-GAT-TTTTGGAACACAC-ATAC-AC-AATATCAT-GAC-AC-AAGAT-A-TGG-----TA-TCCCTA-AAATCACCCAGACTGTTTGTAAAACATGT-AAA-TTGGTCAAATA------TGCC------TTGCCTCATTTTTTT--AAA-TCAC
Reference ( family-2058 ) : NAACTCTTGTCCACTTTCTGACAACATTACCACGTANAGCAGTGGAAAGNACACNAATAANACTTTTGGGGTATNGAAATCAAAGTGTTTGTTAGATAAAGTAATCAGAGCAGANAAACTGATGTTTCANCAATTTTGAGTTTGGTTGTAGAAATTTTNTATATTAGGAAAANTTTTAAATTACGCAAATTCCGAATTGTCAACAACTACTCTTAAGTAGTCGTTCTGGGTTTTCTTTTTTTAAATANAGTTGCATTAGTGGATAAGAAGTCACNTCCTATGGGCATTTTTTAAAAAATGCATTTGTTTTTTAATGTCAATGAAATATCTTAAACAAA-TATCTATA---AGCTTCAGACAT-----AGTGTGTCC-TA-TCGTTTC-TGTTTTTATGCATGCA-TAAAGAACGTGCCCTCA-ATTTTA-CATAC-TTGTGTCGC-AC-TC-CTGACACNGTTAC-ATACAGCAATTGCGTGGA-AAATTACG-C-GATG----TTA-TTGCGAGTA-GGAAATTAATA--TTACTATTACT-AAAAAACTCACGTATTAAAG--GAAAGACTTGATGTT--TCTTCAG-TTTTAGACTCAAGTTTTATCATTTTTCTAGTAAATATAAACNTGTCGTGTAATTAAGC-GATTGGGAAAATCATG--TCAAAAATAACCTCACACA-----TTTTTTTTTAACTGAAACGACATTCTGCTAGTAGTTTAGAATT--CGTATNC------------------A-AAC--A--A-AAA------AT----TAA-----A-AT---------C------TAAA---CTAAANAATTGTATTTAAAAA--GTGTTGCACT-CCTGAC-ATGGAAAAGATAGCCCTATGG---GC---AAAAT-----ACAAC-TTTTT-CTGTCATC-CTTTTTT-----AAAG---TAATGT---CTTCTA---T-GCTG-CTC-TTTTG--AAAAATAAAG-AAAAGGATTA-TATT-GGTAAAGTTAATTTTT---AAT-GGTGCCAGTCAAAAGTC---GAAATGTTG-CACTCCTG----ACCATGAGGG--------GTA----------TGCTCATTAAG-----AT----T--------GACTCCCTCAAAGTTTA----CATGGATGCCAGCCGGT-----TAC--TTTTTTCTTTTATTCAACAGAAG-AGATATTGCTTTAAAAGTTTAGATTTCTTTT--G-T-----AG-TTCAA--TTGATATTATTTAATTCTCAAGA-CAC---TTT-TTGCACAAATT---GGTCAT-------TCTT--T--GTG-TTG--CACT----CCT--GA-CATGG-TACTA-CA-TTTTTTTG--AGCTGA-GA-TTAAAGCC-A--TA-TCTT--AAG-CCTNAA-GT-GTTTC-A-TCATTCTTGGAA-T---TT-AAA-AGTA-TATA--GAT-TG-AAGATT---TTT--AAA--CAACAGTAT-TCTTTTAA-TATAG-ATCTTTTT--GTTTCGA-T---AGACAGG--AA-TTT-GAAAAAA--G---T-CAN-ATTTT-TT--AA-TGTCACAAAAAAGCGTTG-C--ACTCCTGAC-----ATTTTAGG--CGACGTTTT-AGGA-C-ACCAATCTATCA-TTCTT---TG---AG--A---TATCTCT-TA-GAT-TTTTGGAACACAC-ATAC-AC-AATATCAT-GAC-AC-AAGAT-A-TGG-----TA-TCCCTA-AAATCACCCAGACTGTTTGTAAAACATGT-AAA-TTGGTCAAATA------TGCC------TTGCCTCATTTTTTT--AAA-TCAC
gi|1 : AAACAAACTATCTGTATTTAACTGCAAACATTATTCAG-GTGATC-TA-CCAATTC-TATATTTATGCATGCA-TAAAAAACGTG--GTCA-ATTTCATCA-AC-TTTTGTC-C-ACTTT-CTGACAATATTACTATGTAG-A---GCGTGGA-AAG-TACA-CAAATAAAACTT--TTG-GAGTATTGAAATCAA------AGTGTTTTT-AGAAAA-----GTAATCGAGCAGAAAAAC-TGATGTT--TCATCAA-TTTT
gi|1 : tatgAACTTTTGTCCACTTTCTGACAATATTACTATGTAGAGC-GTGGAAAGTACACAAATAAAACTTTTGGAGTATTGAAATCAAAGTGTTT-TTAGA-AAAGTAATC-GAGCAGAAAAACTGATGTTTCATCAATTTTGAGTTTGGTTGTAGAAATTTTGTATATTAGGAAAATTTTTAAATTACATAAATTCCGAATTGTCAACAACTACTCT--AGTAGTCGTTCTGGGTTTTCTTTTTTTAAATAAAGTTGCATTAGTGGATAAGAAGTCACATCC-ATGGGCATT------AAAATGCATTTGTTTTTTAATGTCAA-GAAATATCTTAAACAAA-TATCTATA---AGCTTCAGACAT-----AGTGTGTCCTTATTCGTTTCGTGTTTTTATGCATGCATTAAAGAACATATCCTCATGTTTTA-CATACGTTGTGTTGTGAC-TCACTGACACAGTTAC-ATACAGCAATTACA-GGATAAATTATGCC-GATG----TTAGTTGCAAATA-GGAAATTAATAATTTACTATTACTAAAAAAACTCACATATTAAAG--GAAAGACTTGATGTTGATCTCTAGTTTTTAGACTCAAGTTTTATCATTTTTCTAGTAAATATAAACATGTCGTGTAATTAAGCAGATGAGAAAAATCATGGATCAAAAATAACCTCACACATTTTTTTTTTTTTTTACTGAAACGACATTCTGCAAGTAATTTAGAATT--TGTATGCTATTGAATTAATTACCAGA-AAC--ATGATAAA------AT----TAATATTTA-ATGATAAAAAGT------TAAG---CTAAAGAATTGTATTTAAAAA--GTGTTGCACTGCCTGACGATAGAATAGATAGCTCTGTGGTAAGCTATAAAAT-----ACAACTTTTTT-CTA-CATCACTTCTTT-----ACAATGTTAATGTGTCTTTCTA---TGGCTG-CTCGTTTTGACAAAAATAAAGAAAAAGGATTATTATTAGGTAAGGTTAAATTTTCGGAATAGGTGCCAGTCAAAAGTTCAAGGAATGTTGCCACTTCCGCTGAACCATGAGGG--------GAA----------TATTCATTAAGGCTTCAT----TAGCAGTTGGACTTCCTAAAGG--TA----CATGGATGCCAGCCAGT-----TACTTTTTTTTCTTTTATTCAAGAGAAGAAGATATGGC-TTAAAAGTTTAGTTCTCTTTT--GAT-----AGTTTCAAATTTTATATTATTT-ATTTTCAAGACCACTTTTTT-TTGCACAAATTG--GGTCAT-------TTTT--TGAGTG-TTG--CACTCA--CCTTGGA-CATGGTTACTA-CA--TTTTTTG--AGCTAA-GATTTAACACC-ATTTA-TCTTG-AAGCCCTAAA-GT-GTTTC-C-TCATTCTTTGAA-T---TTAAAA-AGTATTATA--GATGTG--AGATTTTCTTT--AAAACCAACAGTATATCTGTTAATTATAG-ATCTTTTT--GTTCCGATT---ATACAGG--AA-TTTGGAAAAAA--G---A-CAC-ATTTT-TT--AATTGTCACAAAAAAGCGTTG-C--ACTCCTGAC-----ATTTTAGG--AAACTTTTTCAGGACC-ACCAATCTATCATTTCTTTG-TG---AG--A---TATCTCTGTGCGAT-TTTTGGTACACACGATACAACAAATATCATGGACAACAAAGAT-ATTGG-----TATTCCCTA-AAATCATTCA-ACTGTTTGTAAAACATGA-AAT-TTGGTCAAATATTGCTTTGCCCTCATGTTGCCTCATTTTTTTTGAAA-CCACgagtttggttgtagaaattttgtatattaggaaaatttttaaattacataaattccgaattgtcaacaactactctagtagtcgttctgggttttctttttttaaataaagttgcattagtggataagaagtcacatccatgggcattaaaatgcatttgttttttaatgtcaagaaatatcttaaacaaatatctataagcttcagacatagtgtgtccttattcgtttcgtgtttttatgcatgcattaaagaacatatcctcatgttttacatacgttgtgttgtgactcactgacacagttacatacagcaattacaggataaattatgccgatgttagttgcaaataggaaattaataatttactattactaaaaaaactcacatattaaaggaaagacttgatgttgatctctagtttttagactcaagttttatcatttttctagtaaatataaacatgtcgtgtaattaagcagatgagaaaaatcatggatcaaaaataacctcacacatttttttttttttttactgaaacgacattctgcaagtaatttagaatttgtatgctattgaattaattaccagaaacatgataaaattaatatttaatgataaaaagttaagctaaagaattgtatttaaaaagtgttgcactgcctgacgatagaatagatagctctgtggtaagctataaaatacaacttttttctacatcacttctttacaatgttaatgtgtctttctatggctgctcgttttgacaaaaataaagaaaaaggattattattaggtaaggttaaattttcggaataggtgccagtcaaaagttcaaggaatgttgccacttccgctgaaccatgaggggaatattcattaaggcttcattagcagttggacttcctaaaggtacatggatgccagccagttacttttttttcttttattcaagagaagaagatatggcttaaaagtttagttctcttttgatagtttcaaattttatattatttattttcaagaccacttttttttgcacaaattgggtcattttttgagtgttgcactcaccttggacatggttactacattttttgagctaagatttaacaccatttatcttgaagccctaaagtgtttcctcattctttgaatttaaaaagtattatagatgtgagattttctttaaaaccaacagtatatctgttaattatagatctttttgttccgattatacaggaatttggaaaaaagacacattttttaattgtcacaaaaaagcgttgcactcctgacattttaggaaactttttcaggaccaccaatctatcatttctttgtgagatatctctgtgcgatttttggtacacacgatacaacaaatatcatggacaacaaagatattggtattccctaaaatcattcaactgtttgtaaaacatgaaatttggtcaaatattgctttgccctcatgttgcctcattttttttgaaaccaccc
gi|10 : tatgaaacaaactatctgtatttaactgcaaacattattcaggtgatctaccaattctatatttatgcatgcataaaaaacgtggtcaatttcatcCAT-------TCTT--T--GCG-TTG--CACT----CCT--GA-CATGG-TCTTC-CA-TTTTTTTG--AGCTGA-GA-CTAAAGCC-A--CA-TCTT--CAG-CCTAAA-GT-GTTTC-A-TCATTCTTGGAA-T---TT-AAA-AGCA-TAAA--GAC-TG-AAGATT---TAT--ATA--CAACAGTA--TCTTTTcc
gi|11 : CTGAC-----AGTTTAGG--CAACATTTT-AGGA-C-ACCAATCTATCA-TTCTT---TG---AG--ATATTATCTCT-TA-GAT-TTTTGGAACACAT-ATA
gi|12 : aattttgagaacaaaatcacaagagtcccatttggcgccccgtaCCACAAAATTGA----TATGGTTACCAGCTGGT------AC--CCTTTTCTTT-----AACAGAAG-AGGTGTTGCTTTATAAGTTT---TTCCTTTTTCG-TACCGGAG-TTAAA--TTGATATTAT
gi|13 : ctTTTTAG--ATAA-ATATATTT--GTTTCAA-T---CGACAGG--AT-TAT-G-AAATA--G---T-CAT-ATTTT-TT---A-TGTAACAAAA------TG-A--ACTC--AAC------TTTGAGG--TAATGTT----GGA-A-ATTAAT
gi|14 : ATGTTG-CAGTCCTA----GTCATGAGGG--------GTACATGTACTAGTACTCATTAA------AT----T--------GACTCCCACAAAGTATATAATTATGGATACCAG-CAGT-----TAT--TT
gi|15 : GTCAT-------TCTT--T--TTG-TTG--CACT----CCG--GA-CATTG-TACTA-CA-TTTTGTTG--AGCTGA-GA-TTAAAGCC-A--TA-TCTT--AAG-CCTAAA-GT-GTTTC-A-T
gi|16 : tgtatG-----TA-TCCCTA-AAATCACCAAGTCTGTTTGTAAAACGTGT-ACATTTGGTAAAATG------TGCC------TTGCCTCATTTTTTT--AAAGTCAC
gi|17 : -A-TAG-----TA-TCTTTTTAAATCACCCAGACTGTTTGT--------T-AAA------CAAATA------TGCC------TTGCCTCATCTTGTT--AAA-TCAcct
gi|2 : AACTCT-GTCTACTT-CTGACAACA--ACCACTTATAGCAGTGGAAAGGACATCAATAAT-TTTTTGGGGTATGGAAATCAA----TTTGTTAGATAAAATAATTAGAGCAGATAAACT----TTTCAACAATTTT-AGT------GTAAAAATTTTTTATATTAAGAAAAGT--------ATGCAAAT----AATTGTCAA-AA-TACTCTTAAGTAGTC-TTCTGAGTTTT----TTTTAAATACAGTTGCATTAGTGGATAA--AGTCACCTTCTATG--CATTTTTTAAAAAATGCATT-GTTTTTTAAT---AATGAAA--------ACAAC-TATCTATA---A-CTTCAGACAT-----A-TGTGTCC--A-TCATTTC-TGTTTTTATGCAT---------------CCCTCA-ATTTTA--ATAC-TTGTGTTGC-AC-TC-CTGACACCGTTAC-ATACAGCAATTGTATGGA-AA-TTATG-T-GA-G----TTA-TTGCGA-TA-GGAA--TA-TA--TTACTATTACT-AAAA--CTCACATATTAAAG--GAA---CTTG-------TCTTCAG-TTTTAGACTCAAGTTTTAT-ATTTTTCTA----ATAT---CTT----TGTAATTAAGC-AATTGGGAAAATCATA--TCAAAAATAACCTCACACA-----TTTCTTTTTAACTGAAACAA-AT-CTGCTAGTAGTTTAGAATT--CATATAC------------------A-AAC--A--A-AAA------AT----TAA-----A-AT---------C------TAAA---CTAAAGAATTGTATTTAAAAA--GTGTTGCACT-CCTGAC-ATGGAAAAGATAGCCCTATGG---GC---AATAT-----ACAAC-TTTTT-CTGTCATC-CTTTTTACA---AAAA---TAATG----CTTCTAACTT-GC---CTC-TTTTG--AAAAATAAAG-AAAAGGATTA-TATT-GGTAAAGTTAATTTTT---AAT-GGTGCCAGTCAAAAGTC---AAAATGTTG-CACTCCTG----AACATGAGGG--------GTA----------TGCTCATTAA------AT----T--------GACTCCTTAAAAGTTTA----CATGGATGCCAGC-AGT-----TAC--TTTTTTCTTTTATTTAACAGAAG-AGATATTGTTTTAAAAGTTTAGATTTCTTTT--G-T-----AG-TTCAA--TTGATATTATTTAATACTCAAGA-CAT---TTT-TTGCACAAATT---GGTCAT-------TCTG--T--ATG-TTG--CACT----CCT--GA-CATGG-TACTA-CA-TTTTTTTTTTAGCTGA-GA-TTAAAGCC-A--TA-TGTT--TAG-CCTCAA-GT-GTTTC-A-TCATTCTTTGAA-T---TT-AAA-AGTA-TATA--GAT-TG-AAGATT---TTT--TAG--CAACAGTAT-TTTTTAAA-TTGAG-ATATTATT--GTTTCGA-T---AGACAAG--AA-TTT-GAAAAAA--G---A-CAT-ATTTTTTT--AA-TGTCACAAAAAAGCGTTG-C--ACTCCTGAC-----ATTTTAGG--CAACGTTTT-AGGA-C-ACCAATCTATCA-ATCTT---TG---AG--A---TATCTCT-TG-GAG-TTTTGGAACACAC-ATAC-AC-AATATCAT-GAC-AC-AAGAT-A-TGG-----TA-TCCTTA-AAAGCACACAGACTGTTTGTAAAACATGT-AAA----ATAAAATA------TGCT------TCGCCTCA-TATTTT--AAA-CCAC
gi|3 : aATT--C-CATCT------------------A-AAC--A--A-GAG------ATGTGATAA-----ATAT---------C------TAAA---TTAATTAATTGTATTTAAAAA--GTATTGCACT-CCTGAC-ATAAAAAAGATAGCCCTTTGG---GC---AAAATTTTTTAC--T-TTTTT-CTGTCAAC-TTTTTTTCCTCAAAAA---TAATGT---CTTCTA---T-GTTATCTG-TTTTG---AAAATGAAA-AAAAAGATTA-TATT-GGTAAAGTTAATTTTG---AAT-GGTGTCTGCCAAAAGTC---AAAATGTTG-ACCTCCTG----ACTATGAAAG--------GTA----------TGCTCATTAA------AT----T--------GGCTACCTCAAAGTTTA----CATGGAGGCCAGCAGGTAAATATAC--TTTTTCCTTTTCTTGAACAGA---AGAT-----------AGTTTAGATTTCTTTT--G-T-----AG---------------TATTTAATTTTCAAAA-CAC---TTT-T-----AAA--------CA----------CT--T--GTA-TTG--CACT----CCT--GA-CATAG----TA-CA-TTTGTTTG----------------AGCC-A--TA-TCTT--AAG-CCCCAA-GT-GTTTC-A-TCATTCTTGGAA-T---TC-AAA-AGTA-TATA--AAT-TG-AAGATA---TTT--AAA--CAACAGTTT-TCTTTTAA-TATAG-ATCTTTTTTGGTTTTAA-T---AGACAGA--GA-TTT-GAAAAAA--G---T-TAC-ATTTC-TT---A-T----------AGTGTTT-T--ACTCTTGAC-----ATTTTAAG--CGACGTTTT-AGGC-C-ACTA--CT-TCA-ATGTG---TATATAC--A---TGTATC--TA-GATGTTTTGGAACACAT-ATAC-AC-AATATCAT-GAC-TC-AACAT-A-T-G-----T--TTCCTA-AAATCCCTCAGTATGTTTGTAAGACATGTAAAA-TTGGTCAAATA------TATT------TTGCCTCA
gi|4 : TTTC--G-C-----AG-TTAAA--TTGATTATATTTAATTCTCAGGA-CAC---TTT-T-ACACTACTT----------------TATT--T--GAG-TT-------------T---A-CATGG-TACCA-CAATTTTTTTT--ATCTGC-GA-TTAAAGCC-A--AG-TCTT--AAT-CTTCAA-TT-TTTTC-A-CCAATGTTGGAA-T---TA-AAA-AATA-TATA--GAT-TG-ACCATT---TTT--AAA--CAACCATTT-TCTTTTAA-TATGG-ATCATTTT--CTTTTGA-T---TGACAGG--AC-TTT-GAAAAAA--G---T-AAA-AATTT------A-TGTCACAAAAATATATTG-C--ACTTCTGAT-----ATTTTTAG--CGACGTTTT-AGAA-C-ACCAATTCATCA-TTTTCGTATA---AGATA---TATATGT-TA-G-T-TATTGAAATACAC-ATAC-AC-AATATCAT-GAC-AT-AACAT-A-TGG-----TA-TACCTG-CAATCACCCATACTGTTTGTAAAAGATGT-AAAGTTGGTCAAATA------CGCA------TTGCCTTGCTTCTTG--AAA-TCAC
gi|5 : CTCCTG----GCCATGAGGG--------GTA----------TGCTCATTAAG-----ATAAATT--------GACTTCCTCAAAGTTTA----CATGGATGCCAGCCAGT-----TAC--TTTTTTCTTTTATTCAACAGAAG-AGATACTGCTTTAAAAGTTTAGATTTCTTTT--G-T-----AG-TTCAA--TTGATATAATTTATTTCTCAAGA-CAC---TTTATTGCACAAATT---GGTCAT-------TTTT--G--GTG-TTG--CACT----CCT--GA-CATGG-TACTA-CA-TTTTTTTG--AGCTGA-GA-TTAAAGCC-A--TA-TCTTA-AAG-CCTAAAGGTGGTTTCAA-AGATTCTTTGAA-T---TT-AAAGAGTA-TA-AGTGAT-TGAAAGATT---TTTTAAAA--CAATAGTA--TCTTTTAA-TATAG-ATCTTTTT--GTTTTGA-T---AGACAGG--AGTTTT-GAAAAAA--GC--T-CAA-ATTTT-TTAAAA-TGTCACAAAAAAGCGTTG-C--ACTCCTGAc
gi|6 : TGTAATTAAGC-GATTGGGGAAATCATG--TCAAAAATAACCTGTCACA-----TGTTTTGTTAG-TGAAAC-ACA-TCTGCTAGTAGTTTGAAATTAAAATATTA------------------ATAATTGA--A-AAAAATAATAT----TAA-----A-AT---------TCAGTGATAAAAATCTAAACTATTGAA---AAAAAATGTATTGCACT-CCTTTC-CTGGAAAACACAGTCCTAT-G---GC---AAAAT-----AGAAC-CTTTTGTTGTCATC-CT------------------------------------------CTC-TTTTG--AAAAATAAAG-AAAAGGATTA-TATT-AGTAAACTTAATTTTT---AAT-GGTGCCAGTCAAAAGTC---GAAATGTTG-CACTCCTG----ACCATGACGGTTACAATTGTA----------TG-TCATT
gi|7 : catttcttACAAATTTGGGGTCATGGCCGGGTCTTGGT--GTGATTGGGCACCGGGCCTT--GATCATGG-TACTAGCA------------GGTGAAGG-GTAAAGCCCA--TGGTCTTTGGAG-CTTCAC-GT-GTGGC-AATCATTCTTGGAAATGGGTT-AGG-AGGA----G--GAT-TG-GCGGTG---T----AAATGCAACATTTC-CCTTTTAA-TATAGGATCTT-----GTTTTGA-TGGGAGACAGGGAAA-TGG-GCAAGAA--GAGGTGCAGTAGTTT-TA--GG-TGTCTCAAAAAAGTGTTGGCGGACTCCTGAC-----ATTTTAGGAGCGATGTTTT-AGGA-C-ACCGAT
gi|8 : -TG-AAGATT---TTT--AAG--CAACAGTAC-TTTTTCAA-TATAG-ATCATTTT--GTTTTGG-T---AGACAGG--AA-TTT-AAAAAAAATG---T-CAA-ATCTT-TTA-AA-TGTCACAAAAAAGTGTTA-C--ACTCCTCAC-----ATTTTATA--CAACGTTTT-TGG--C-ACCAATTTATCA-TACCT---TG---AG--A---AATCTCG-TA-GAT-TTTTGGAACAAAC-ATAG-AA-AATATCGT-G
gi|9 : TTG-T--ATTCCCGACTCTTTCTTTTGG-----ACGCTTT-AAGA-CTA--AATTCATCA-TTTTG---TG---AG--G---TATATCT-TA-GAT-TTT-GGAACATAC-ATCC-A----TACCA----C-AC-CAGATTA-GGGGCATATA-TCCATA-AAATCACCCAGACCGTTTGTAAAGC
Alignments
lowQualScore : 1111111111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 1 1 11 1 11 2222 1 1 1 2222 1 222222 33333333 2222 1 1 11 1 2222 11 1 11 333333 1 222 1 333333 1 22222 33333333 2222 1 3333333333333333 1 22 1 1111 1 1 1 1 11 444444444444444 1 1 33333 1 111 11 11 2222222 1 1 2222 2222222222 1 11 33333 111111 3333333333333333333333333333333333333333333333333333333333333333333333333333333333 111 11 1 1 111 111 22222 1 1 1 1 77777777777777777777777777777777777777777777777777 11 1 1 111 1 111 1111 222222222222222222222 555555555555555555555 1111 11111 1111111 111 1 2222 11111111 1111 11 111 11 111 11111 222 11111 111 111 111111 11111 22 111111 111111 11
lowQualScore : 5 5 88 2 1 5 1 1 66 1 3333 5 5 5 1 3333 1 5 999999 1 1 66666666 3333 5 5 88 5 4444 1 88 1 5 77 000000 5 000 5 000000 3 66666 88888888 5555 0 3 1111111111111111 3 00 7 3 6666 3 3 1 3 6 7 88 3 99 0 222222222222222 6 2 3 7 22222 3 333 0 88 11 7 1111111 3 5 4444 6666666666 3 88 33333 6 555555 3333333333333333333333333333333333333333333333333333333333333333333333333333333333 777 1 3 33 0 0 1 2 777 777 55555 3 0 0 3 0 0 22222222222222222222222222222222222222222222222222 3 33 0 0 0 777 0 777 8 4444 999999999999999999999 1 999999999999999999999 1 4444 55 66666 99 11 3 0 8 3 0 5 1 0 1 99 6666666 6 2 99 0 8 444 8 0 0000 66666666 0 77777 5 66 7777 66 5 5 5 88 777 5 5 5 66 5 66 5 1 5 5 5 5 0 5 000 5 5 5 5 77 5 5 888 0 66 33 222 5 5 0 66 5 888 66 5 5 0 66 66666 66 5 000 5 0 1 6666 11111 66 1 4 4 4 5 777 000 111111 0 77 5 5 5 6 99 6 8 8 6 6 1 44444 5 5 0 6 00 999999 999999 3 11 8
lowQualScore : . . .. . . . . . .. . .... . . . . .... . . ...... . . ........ .... . . .. . .... . .. . . .. ...... . ... . ...... . ..... ........ .... . . ................ . .. . . .... . . . . . . .. . .. . ............... . . . . ..... . ... . .. .. . ....... . . .... .......... . .. ..... . ...... .................................................................................. ... . . .. . . . . ... ... ..... . . . . . . .................................................. . .. . . . ... . ... . .... ..................... . ..................... . .... .. ..... .. .. . . . . . . . . . .. ....... . . .. . . ... . . .... ........ . ..... . .. .... .. . . . .. ... . . . .. . .. . . . . . . . . ... . . . . .. . . ... . .. .. ... . . . .. . ... .. . . . .. ..... .. . ... . . . .... ..... .. . . . . . ... ... ...... . .. . . . . .. . . . . . . ..... . . . . .. ...... ...... . .. .
lowQualScore : 5 5 55 5 0 5 0 0 55 0 5555 0 5 5 0 5555 0 0 555555 0 0 55555555 0000 0 0 55 0 0000 0 00 0 5 55 555555 5 555 5 000000 3 33333 33333333 0000 7 3 7777777777777777 3 00 3 3 0000 3 3 0 3 7 3 00 3 33 7 000000000000000 7 0 3 3 00000 3 000 7 33 00 3 0000000 3 0 0000 5555555555 3 33 33333 7 333333 0000000000000000000000000000000000000000000000000000000000000000000000000000000000 555 0 2 88 0 0 2 5 555 555 00000 2 0 0 2 0 0 55555555555555555555555555555555555555555555555555 2 22 2 0 0 555 0 555 0 2222 777777777777777777777 0 000000000000000000000 4 2222 88 77777 22 44 2 8 0 8 6 6 0 8 0 22 8888888 7 5 22 8 0 000 0 6 8888 44444444 2 88888 0 99 5555 99 0 0 0 22 000 0 0 0 99 0 99 0 0 0 0 0 0 7 7 000 7 7 7 1 99 0 0 888 4 99 88 888 0 0 4 99 0 888 99 0 0 1 99 22222 00 0 000 0 1 1 9999 11111 11 7 4 4 4 7 999 000 000000 7 11 7 7 7 7 22 7 0 0 7 7 0 33333 7 7 7 7 77 222222 222222 8 00 0
consensus : NAACTCTTGTCCACTTTCTGACAACATTACCACGTANAGCAGTGGAAAGNACACNAATAANACTTTTGGGGTATNGAAATCAAAGTGTTTGTTAGATAAAGTAATCAGAGCAGANAAACTGATGTTTCANCAATTTTGAGTTTGGTTGTAGAAATTTTNTATATTAGGAAAANTTTTAAATTACGCAAATTCCGAATTGTCAACAACTACTCTTAAGTAGTCGTTCTGGGTTTTCTTTTTTTAAATANAGTTGCATTAGTGGATAAGAAGTCACNTCCTATGGGCATTTTTTAAAAAATGCATTTGTTTTTTAATGTCAATGAAATATCTTAAACAAA-TATCTATA---AGCTTCAGACAT-----AGTGTGTCC-TA-TCGTTTC-TGTTTTTATGCATGCA-TAAAGAACGTGCCCTCA-ATTTTA-CATAC-TTGTGTCGC-AC-TC-CTGACACNGTTAC-ATACAGCAATTGCGTGGA-AAGTTACG-C-GATG----TTA-TTGCGAGTA-GGAAATTAATA--TTACTATTACT-AAAAAACTCACGTATTAAAG--GAAAGACTTGATGTT--TCTTCAG-TTTTAGACTCAAGTTTTATCATTTTTCTAGTAAATATAAACNTGTCGTGTAATTAAGC-GATTGGGAAAATCATG--TCAAAAATAACCTCACACA-----TTTTTTTTTAACTGAAACGACATTCTGCTAGTAGTTTAGAATT--CGTATNC------------------A-AAC--A--A-AAA------AT----TAA-----A-AT---------C------TAAA---CTAAANAATTGTATTTAAAAA--GTGTTGCACT-CCTGAC-ATGGAAAAGATAGCCCTATGG---GC---AAAAT-----ACAAC-TTTTT-CTGTCATC-CT-TCTTT-C----GA----AA-TAATGTC-TTCTA---T-GCTG-CTC-TTTTG--AAAAATAAAG-AAAAGGATTA-TATT-GGTAAAGTTAATTTTT---AAT-GGTGCCAGTCAAAAGTC---GAAATGTTG-CACTCCTG----ACCATGAGGG--------GTA----------TGCTCATTAAG-----AT----T--------GACTCCCTCAAAGTTTA----CATGGATGCCAGCCGGT-----TAC--TTTTTTCTTTTATTCAACAGAAG-AGATATTGCTTTAAAAGTTTAGATTTCTTTT--G-T-----AG-TTCAA--TTGATATTATTTAATTCTCAAGA-CAC---TTT-TTGCACAAATT---GGTCAT-------TCTT--T--GTG-TTG--CACT----CCT--GA-CATGG-TACTA-CA-TTTTTTTG--AGCTGA-GA-TTAAAGCC-A--TA-TCTT--AAG-CCTNAA-GT-GTTTC-A-TCATTCTTGGAA-T---TT-AAA-AGTA-TATA--GAT-TG-AAGATT---TTT--AAA--CAACAGTAT-TCTTTTAA-TATAG-ATCTTTTT--GTTTCGA-T---AGACAGG--AA-TTT-GAAAAAA--G---T-CAN-ATTTT-TT--AA-TGTCACAAAAAAGCGTTG-C--ACTCCTGAC-----ATTTTAGG--CGACGTTTT-AGGA-C-ACCAATCTATCA-TTCTT---TG---AG--A---TATCTCT-TA-GAT-TTTTGGAACACAC-ATAC-AC-AATATCAT-GAC-AC-AAGAT-A-TGG-----TA-TCCCTA-AAATCACCCAGACTGTTTGTAAAACATGT-AAA-TTGGTCAAATA------TGCC------TTGCCTCATTTTTTT--AAA-TCAC
Reference ( family-2058 ) : NAACTCTTGTCCACTTTCTGACAACATTACCACGTANAGCAGTGGAAAGNACACNAATAANACTTTTGGGGTATNGAAATCAAAGTGTTTGTTAGATAAAGTAATCAGAGCAGANAAACTGATGTTTCANCAATTTTGAGTTTGGTTGTAGAAATTTTNTATATTAGGAAAANTTTTAAATTACGCAAATTCCGAATTGTCAACAACTACTCTTAAGTAGTCGTTCTGGGTTTTCTTTTTTTAAATANAGTTGCATTAGTGGATAAGAAGTCACNTCCTATGGGCATTTTTTAAAAAATGCATTTGTTTTTTAATGTCAATGAAATATCTTAAACAAA-TATCTATA---AGCTTCAGACAT-----AGTGTGTCC-TA-TCGTTTC-TGTTTTTATGCATGCA-TAAAGAACGTGCCCTCA-ATTTTA-CATAC-TTGTGTCGC-AC-TC-CTGACACNGTTAC-ATACAGCAATTGCGTGGA-AAGTTACG-C-GATG----TTA-TTGCGAGTA-GGAAATTAATA--TTACTATTACT-AAAAAACTCACGTATTAAAG--GAAAGACTTGATGTT--TCTTCAG-TTTTAGACTCAAGTTTTATCATTTTTCTAGTAAATATAAACNTGTCGTGTAATTAAGC-GATTGGGAAAATCATG--TCAAAAATAACCTCACACA-----TTTTTTTTTAACTGAAACGACATTCTGCTAGTAGTTTAGAATT--CGTATNC------------------A-AAC--A--A-AAA------AT----TAA-----A-AT---------C------TAAA---CTAAANAATTGTATTTAAAAA--GTGTTGCACT-CCTGAC-ATGGAAAAGATAGCCCTATGG---GC---AAAAT-----ACAAC-TTTTT-CTGTCATC-CT-TTTTT-C----AA----AA-TAATGTC-TTCTA---T-GCTG-CTC-TTTTG--AAAAATAAAG-AAAAGGATTA-TATT-GGTAAAGTTAATTTTT---AAT-GGTGCCAGTCAAAAGTC---GAAATGTTG-CACTCCTG----ACCATGAGGG--------GTA----------TGCTCATTAAG-----AT----T--------GACTCCCTCAAAGTTTA----CATGGATGCCAGCCGGT-----TAC--TTTTTTCTTTTATTCAACAGAAG-AGATATTGCTTTAAAAGTTTAGATTTCTTTT--G-T-----AG-TTCAA--TTGATATTATTTAATTCTCAAGA-CAC---TTT-TTGCACAAATT---GGTCAT-------TCTT--T--GTG-TTG--CACT----CCT--GA-CATGG-TACTA-CA-TTTTTTTG--AGCTGA-GA-TTAAAGCC-A--TA-TCTT--AAG-CCTNAA-GT-GTTTC-A-TCATTCTTGGAA-T---TT-AAA-AGTA-TATA--GAT-TG-AAGATT---TTT--AAA--CAACAGTAT-TCTTTTAA-TATAG-ATCTTTTT--GTTTCGA-T---AGACAGG--AA-TTT-GAAAAAA--G---T-CAN-ATTTT-TT--AA-TGTCACAAAAAAGCGTTG-C--ACTCCTGAC-----ATTTTAGG--CGACGTTTT-AGGA-C-ACCAATCTATCA-TTCTT---TG---AG--A---TATCTCT-TA-GAT-TTTTGGAACACAC-ATAC-AC-AATATCAT-GAC-AC-AAGAT-A-TGG-----TA-TCCCTA-AAATCACCCAGACTGTTTGTAAAACATGT-AAA-TTGGTCAAATA------TGCC------TTGCCTCATTTTTTT--AAA-TCAC
gi|1 : AAACAAACTATCTGTATTTAACTGCAAACATTATTCAG-GTGATC-TA-CCAATTC-TATATTTATGCATGCA-TAAAAAACGTG--GTCA-ATTTCATCA-AC-TTTTGTC-C-ACTTT-CTGACAATATTACTATGTAG-A---GCGTGGA-AAG-TACA-CAAATAAAACTT--TTG-GAGTATTGAAATCAA------AGTGTTTTT-AGAAAA-----GTAATCGAGCAGAAAAAC-TGATGTT--TCATCAA-TTTT
gi|1 : tatgAACTTTTGTCCACTTTCTGACAATATTACTATGTAGAGC-GTGGAAAGTACACAAATAAAACTTTTGGAGTATTGAAATCAAAGTGTTT-TTAGA-AAAGTAATC-GAGCAGAAAAACTGATGTTTCATCAATTTTGAGTTTGGTTGTAGAAATTTTGTATATTAGGAAAATTTTTAAATTACATAAATTCCGAATTGTCAACAACTACTCT--AGTAGTCGTTCTGGGTTTTCTTTTTTTAAATAAAGTTGCATTAGTGGATAAGAAGTCACATCC-ATGGGCATT------AAAATGCATTTGTTTTTTAATGTCAA-GAAATATCTTAAACAAA-TATCTATA---AGCTTCAGACAT-----AGTGTGTCCTTATTCGTTTCGTGTTTTTATGCATGCATTAAAGAACATATCCTCATGTTTTA-CATACGTTGTGTTGTGAC-TCACTGACACAGTTAC-ATACAGCAATTACA-GGATAAATTATGCC-GATG----TTAGTTGCAAATA-GGAAATTAATAATTTACTATTACTAAAAAAACTCACATATTAAAG--GAAAGACTTGATGTTGATCTCTAGTTTTTAGACTCAAGTTTTATCATTTTTCTAGTAAATATAAACATGTCGTGTAATTAAGCAGATGAGAAAAATCATGGATCAAAAATAACCTCACACATTTTTTTTTTTTTTTACTGAAACGACATTCTGCAAGTAATTTAGAATT--TGTATGCTATTGAATTAATTACCAGA-AAC--ATGATAAA------AT----TAATATTTA-ATGATAAAAAGT------TAAG---CTAAAGAATTGTATTTAAAAA--GTGTTGCACTGCCTGACGATAGAATAGATAGCTCTGTGGTAAGCTATAAAAT-----ACAACTTTTTT-CTA-CATCACT-TCTTTAC----AATGTTAA-T-GTGTCTTTCTA---TGGCTG-CTCGTTTTGACAAAAATAAAGAAAAAGGATTATTATTAGGTAAGGTTAAATTTTCGGAATAGGTGCCAGTCAAAAGTTCAAGGAATGTTGCCACTTCCGCTGAACCATGAGGG--------GAA----------TATTCATTAAGGCTTCAT----TAGCAGTTGGACTTCCTAAAGG--TA----CATGGATGCCAGCCAGT-----TACTTTTTTTTCTTTTATTCAAGAGAAGAAGATATGGC-TTAAAAGTTTAGTTCTCTTTT--GAT-----AGTTTCAAATTTTATATTATTT-ATTTTCAAGACCACTTTTTT-TTGCACAAATTG--GGTCAT-------TTTT--TGAGTG-TTG--CACTCA--CCTTGGA-CATGGTTACTA-CA--TTTTTTG--AGCTAA-GATTTAACACC-ATTTA-TCTTG-AAGCCCTAAA-GT-GTTTC-C-TCATTCTTTGAA-T---TTAAAA-AGTATTATA--GATGTG--AGATTTTCTTT--AAAACCAACAGTATATCTGTTAATTATAG-ATCTTTTT--GTTCCGATT---ATACAGG--AA-TTTGGAAAAAA--G---A-CAC-ATTTT-TT--AATTGTCACAAAAAAGCGTTG-C--ACTCCTGAC-----ATTTTAGG--AAACTTTTTCAGGACC-ACCAATCTATCATTTCTTTG-TG---AG--A---TATCTCTGTGCGAT-TTTTGGTACACACGATACAACAAATATCATGGACAACAAAGAT-ATTGG-----TATTCCCTA-AAATCATTCA-ACTGTTTGTAAAACATGA-AAT-TTGGTCAAATATTGCTTTGCCCTCATGTTGCCTCATTTTTTTTGAAA-CCACgagtttggttgtagaaattttgtatattaggaaaatttttaaattacataaattccgaattgtcaacaactactctagtagtcgttctgggttttctttttttaaataaagttgcattagtggataagaagtcacatccatgggcattaaaatgcatttgttttttaatgtcaagaaatatcttaaacaaatatctataagcttcagacatagtgtgtccttattcgtttcgtgtttttatgcatgcattaaagaacatatcctcatgttttacatacgttgtgttgtgactcactgacacagttacatacagcaattacaggataaattatgccgatgttagttgcaaataggaaattaataatttactattactaaaaaaactcacatattaaaggaaagacttgatgttgatctctagtttttagactcaagttttatcatttttctagtaaatataaacatgtcgtgtaattaagcagatgagaaaaatcatggatcaaaaataacctcacacatttttttttttttttactgaaacgacattctgcaagtaatttagaatttgtatgctattgaattaattaccagaaacatgataaaattaatatttaatgataaaaagttaagctaaagaattgtatttaaaaagtgttgcactgcctgacgatagaatagatagctctgtggtaagctataaaatacaacttttttctacatcacttctttacaatgttaatgtgtctttctatggctgctcgttttgacaaaaataaagaaaaaggattattattaggtaaggttaaattttcggaataggtgccagtcaaaagttcaaggaatgttgccacttccgctgaaccatgaggggaatattcattaaggcttcattagcagttggacttcctaaaggtacatggatgccagccagttacttttttttcttttattcaagagaagaagatatggcttaaaagtttagttctcttttgatagtttcaaattttatattatttattttcaagaccacttttttttgcacaaattgggtcattttttgagtgttgcactcaccttggacatggttactacattttttgagctaagatttaacaccatttatcttgaagccctaaagtgtttcctcattctttgaatttaaaaagtattatagatgtgagattttctttaaaaccaacagtatatctgttaattatagatctttttgttccgattatacaggaatttggaaaaaagacacattttttaattgtcacaaaaaagcgttgcactcctgacattttaggaaactttttcaggaccaccaatctatcatttctttgtgagatatctctgtgcgatttttggtacacacgatacaacaaatatcatggacaacaaagatattggtattccctaaaatcattcaactgtttgtaaaacatgaaatttggtcaaatattgctttgccctcatgttgcctcattttttttgaaaccaccc
gi|10 : tatgaaacaaactatctgtatttaactgcaaacattattcaggtgatctaccaattctatatttatgcatgcataaaaaacgtggtcaatttcatcCAT-------TCTT--T--GCG-TTG--CACT----CCT--GA-CATGG-TCTTC-CA-TTTTTTTG--AGCTGA-GA-CTAAAGCC-A--CA-TCTT--CAG-CCTAAA-GT-GTTTC-A-TCATTCTTGGAA-T---TT-AAA-AGCA-TAAA--GAC-TG-AAGATT---TAT--ATA--CAACAGTA--TCTTTTcc
gi|11 : CTGAC-----AGTTTAGG--CAACATTTT-AGGA-C-ACCAATCTATCA-TTCTT---TG---AG--ATATTATCTCT-TA-GAT-TTTTGGAACACAT-ATA
gi|12 : aattttgagaacaaaatcacaagagtcccatttggcgccccgtaCCACAAAATTGA----TATGGTTACCAGCTGGT------AC--CCTTTTCTTT-----AACAGAAG-AGGTGTTGCTTTATAAGTTT---TTCCTTTTTCG-TACCGGAG-TTAAA--TTGATATTAT
gi|13 : ctTTTTAG--ATAA-ATATATTT--GTTTCAA-T---CGACAGG--AT-TAT-G-AAATA--G---T-CAT-ATTTT-TT---A-TGTAACAAAA------TG-A--ACTC--AAC------TTTGAGG--TAATGTT----GGA-A-ATTAAT
gi|14 : ATGTTG-CAGTCCTA----GTCATGAGGG--------GTACATGTACTAGTACTCATTAA------AT----T--------GACTCCCACAAAGTATATAATTATGGATACCAG-CAGT-----TAT--TT
gi|15 : GTCAT-------TCTT--T--TTG-TTG--CACT----CCG--GA-CATTG-TACTA-CA-TTTTGTTG--AGCTGA-GA-TTAAAGCC-A--TA-TCTT--AAG-CCTAAA-GT-GTTTC-A-T
gi|16 : tgtatG-----TA-TCCCTA-AAATCACCAAGTCTGTTTGTAAAACGTGT-ACATTTGGTAAAATG------TGCC------TTGCCTCATTTTTTT--AAAGTCAC
gi|17 : -A-TAG-----TA-TCTTTTTAAATCACCCAGACTGTTTGT--------T-AAA------CAAATA------TGCC------TTGCCTCATCTTGTT--AAA-TCAcct
gi|2 : AACTCT-GTCTACTT-CTGACAACA--ACCACTTATAGCAGTGGAAAGGACATCAATAAT-TTTTTGGGGTATGGAAATCAA----TTTGTTAGATAAAATAATTAGAGCAGATAAACT----TTTCAACAATTTT-AGT------GTAAAAATTTTTTATATTAAGAAAAGT--------ATGCAAAT----AATTGTCAA-AA-TACTCTTAAGTAGTC-TTCTGAGTTTT----TTTTAAATACAGTTGCATTAGTGGATAA--AGTCACCTTCTATG--CATTTTTTAAAAAATGCATT-GTTTTTTAAT---AATGAAA--------ACAAC-TATCTATA---A-CTTCAGACAT-----A-TGTGTCC--A-TCATTTC-TGTTTTTATGCAT---------------CCCTCA-ATTTTA--ATAC-TTGTGTTGC-AC-TC-CTGACACCGTTAC-ATACAGCAATTGTATGGA-AA-TTATG-T-GA-G----TTA-TTGCGA-TA-GGAA--TA-TA--TTACTATTACT-AAAA--CTCACATATTAAAG--GAA---CTTG-------TCTTCAG-TTTTAGACTCAAGTTTTAT-ATTTTTCTA----ATAT---CTT----TGTAATTAAGC-AATTGGGAAAATCATA--TCAAAAATAACCTCACACA-----TTTCTTTTTAACTGAAACAA-AT-CTGCTAGTAGTTTAGAATT--CATATAC------------------A-AAC--A--A-AAA------AT----TAA-----A-AT---------C------TAAA---CTAAAGAATTGTATTTAAAAA--GTGTTGCACT-CCTGAC-ATGGAAAAGATAGCCCTATGG---GC---AATAT-----ACAAC-TTTTT-CTGTCATC-CT-TTTTA-C----AA----AAATAATG-C-TTCTAACTT-GC---CTC-TTTTG--AAAAATAAAG-AAAAGGATTA-TATT-GGTAAAGTTAATTTTT---AAT-GGTGCCAGTCAAAAGTC---AAAATGTTG-CACTCCTG----AACATGAGGG--------GTA----------TGCTCATTAA------AT----T--------GACTCCTTAAAAGTTTA----CATGGATGCCAGC-AGT-----TAC--TTTTTTCTTTTATTTAACAGAAG-AGATATTGTTTTAAAAGTTTAGATTTCTTTT--G-T-----AG-TTCAA--TTGATATTATTTAATACTCAAGA-CAT---TTT-TTGCACAAATT---GGTCAT-------TCTG--T--ATG-TTG--CACT----CCT--GA-CATGG-TACTA-CA-TTTTTTTTTTAGCTGA-GA-TTAAAGCC-A--TA-TGTT--TAG-CCTCAA-GT-GTTTC-A-TCATTCTTTGAA-T---TT-AAA-AGTA-TATA--GAT-TG-AAGATT---TTT--TAG--CAACAGTAT-TTTTTAAA-TTGAG-ATATTATT--GTTTCGA-T---AGACAAG--AA-TTT-GAAAAAA--G---A-CAT-ATTTTTTT--AA-TGTCACAAAAAAGCGTTG-C--ACTCCTGAC-----ATTTTAGG--CAACGTTTT-AGGA-C-ACCAATCTATCA-ATCTT---TG---AG--A---TATCTCT-TG-GAG-TTTTGGAACACAC-ATAC-AC-AATATCAT-GAC-AC-AAGAT-A-TGG-----TA-TCCTTA-AAAGCACACAGACTGTTTGTAAAACATGT-AAA----ATAAAATA------TGCT------TCGCCTCA-TATTTT--AAA-CCAC
gi|3 : aATT--C-CATCT------------------A-AAC--A--A-GAG------ATGTGATAA-----ATAT---------C------TAAA---TTAATTAATTGTATTTAAAAA--GTATTGCACT-CCTGAC-ATAAAAAAGATAGCCCTTTGG---GC---AAAATTTTTTAC--T-TTTTT-CTGTCAAC-TT-TTTTT-CCTCAAA----AA-TAATGTC-TTCTA---T-GTTATCTG-TTTTG---AAAATGAAA-AAAAAGATTA-TATT-GGTAAAGTTAATTTTG---AAT-GGTGTCTGCCAAAAGTC---AAAATGTTG-ACCTCCTG----ACTATGAAAG--------GTA----------TGCTCATTAA------AT----T--------GGCTACCTCAAAGTTTA----CATGGAGGCCAGCAGGTAAATATAC--TTTTTCCTTTTCTTGAACAGA---AGAT-----------AGTTTAGATTTCTTTT--G-T-----AG---------------TATTTAATTTTCAAAA-CAC---TTT-T-----AAA--------CA----------CT--T--GTA-TTG--CACT----CCT--GA-CATAG----TA-CA-TTTGTTTG----------------AGCC-A--TA-TCTT--AAG-CCCCAA-GT-GTTTC-A-TCATTCTTGGAA-T---TC-AAA-AGTA-TATA--AAT-TG-AAGATA---TTT--AAA--CAACAGTTT-TCTTTTAA-TATAG-ATCTTTTTTGGTTTTAA-T---AGACAGA--GA-TTT-GAAAAAA--G---T-TAC-ATTTC-TT---A-T----------AGTGTTT-T--ACTCTTGAC-----ATTTTAAG--CGACGTTTT-AGGC-C-ACTA--CT-TCA-ATGTG---TATATAC--A---TGTATC--TA-GATGTTTTGGAACACAT-ATAC-AC-AATATCAT-GAC-TC-AACAT-A-T-G-----T--TTCCTA-AAATCCCTCAGTATGTTTGTAAGACATGTAAAA-TTGGTCAAATA------TATT------TTGCCTCA
gi|4 : TTTC--G-C-----AG-TTAAA--TTGATTATATTTAATTCTCAGGA-CAC---TTT-T-ACACTACTT----------------TATT--T--GAG-TT-------------T---A-CATGG-TACCA-CAATTTTTTTT--ATCTGC-GA-TTAAAGCC-A--AG-TCTT--AAT-CTTCAA-TT-TTTTC-A-CCAATGTTGGAA-T---TA-AAA-AATA-TATA--GAT-TG-ACCATT---TTT--AAA--CAACCATTT-TCTTTTAA-TATGG-ATCATTTT--CTTTTGA-T---TGACAGG--AC-TTT-GAAAAAA--G---T-AAA-AATTT------A-TGTCACAAAAATATATTG-C--ACTTCTGAT-----ATTTTTAG--CGACGTTTT-AGAA-C-ACCAATTCATCA-TTTTCGTATA---AGATA---TATATGT-TA-G-T-TATTGAAATACAC-ATAC-AC-AATATCAT-GAC-AT-AACAT-A-TGG-----TA-TACCTG-CAATCACCCATACTGTTTGTAAAAGATGT-AAAGTTGGTCAAATA------CGCA------TTGCCTTGCTTCTTG--AAA-TCAC
gi|5 : CTCCTG----GCCATGAGGG--------GTA----------TGCTCATTAAG-----ATAAATT--------GACTTCCTCAAAGTTTA----CATGGATGCCAGCCAGT-----TAC--TTTTTTCTTTTATTCAACAGAAG-AGATACTGCTTTAAAAGTTTAGATTTCTTTT--G-T-----AG-TTCAA--TTGATATAATTTATTTCTCAAGA-CAC---TTTATTGCACAAATT---GGTCAT-------TTTT--G--GTG-TTG--CACT----CCT--GA-CATGG-TACTA-CA-TTTTTTTG--AGCTGA-GA-TTAAAGCC-A--TA-TCTTA-AAG-CCTAAAGGTGGTTTCAA-AGATTCTTTGAA-T---TT-AAAGAGTA-TA-AGTGAT-TGAAAGATT---TTTTAAAA--CAATAGTA--TCTTTTAA-TATAG-ATCTTTTT--GTTTTGA-T---AGACAGG--AGTTTT-GAAAAAA--GC--T-CAA-ATTTT-TTAAAA-TGTCACAAAAAAGCGTTG-C--ACTCCTGAc
gi|6 : TGTAATTAAGC-GATTGGGGAAATCATG--TCAAAAATAACCTGTCACA-----TGTTTTGTTAG-TGAAAC-ACA-TCTGCTAGTAGTTTGAAATTAAAATATTA------------------ATAATTGA--A-AAAAATAATAT----TAA-----A-AT---------TCAGTGATAAAAATCTAAACTATTGAA---AAAAAATGTATTGCACT-CCTTTC-CTGGAAAACACAGTCCTAT-G---GC---AAAAT-----AGAAC-CTTTTGTTGTCATC-CTCTCTTT-T----GA----AA--AAT------------------------------AAAGA-AAAG------GATTA-TATT-AGTAAACTTAATTTTT---AAT-GGTGCCAGTCAAAAGTC---GAAATGTTG-CACTCCTG----ACCATGACGGTTACAATTGTA----------TG-TCATT
gi|7 : catttcttACAAATTTGGGGTCATGGCCGGGTCTTGGT--GTGATTGGGCACCGGGCCTT--GATCATGG-TACTAGCA------------GGTGAAGG-GTAAAGCCCA--TGGTCTTTGGAG-CTTCAC-GT-GTGGC-AATCATTCTTGGAAATGGGTT-AGG-AGGA----G--GAT-TG-GCGGTG---T----AAATGCAACATTTC-CCTTTTAA-TATAGGATCTT-----GTTTTGA-TGGGAGACAGGGAAA-TGG-GCAAGAA--GAGGTGCAGTAGTTT-TA--GG-TGTCTCAAAAAAGTGTTGGCGGACTCCTGAC-----ATTTTAGGAGCGATGTTTT-AGGA-C-ACCGAT
gi|8 : -TG-AAGATT---TTT--AAG--CAACAGTAC-TTTTTCAA-TATAG-ATCATTTT--GTTTTGG-T---AGACAGG--AA-TTT-AAAAAAAATG---T-CAA-ATCTT-TTA-AA-TGTCACAAAAAAGTGTTA-C--ACTCCTCAC-----ATTTTATA--CAACGTTTT-TGG--C-ACCAATTTATCA-TACCT---TG---AG--A---AATCTCG-TA-GAT-TTTTGGAACAAAC-ATAG-AA-AATATCGT-G
gi|9 : TTG-T--ATTCCCGACTCTTTCTTTTGG-----ACGCTTT-AAGA-CTA--AATTCATCA-TTTTG---TG---AG--G---TATATCT-TA-GAT-TTT-GGAACATAC-ATCC-A----TACCA----C-AC-CAGATTA-GGGGCATATA-TCCATA-AAATCACCCAGACCGTTTGTAAAGC
Alignments
lowQualScore : 1111111111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 1 1 11 1 11 2222 1 1 1 2222 1 222222 33333333 2222 1 1 11 1 2222 11 1 11 333333 1 222 1 333333 1 22222 33333333 2222 1 3333333333333333 1 22 1 1111 1 1 1 1 11 444444444444444 1 1 33333 1 111 11 11 2222222 1 1 2222 2222222222 1 11 33333 111111 3333333333333333333333333333333333333333333333333333333333333333333333333333333333 111 11 1 1 111 111 22222 1 1 1 1 77777777777777777777777777777777777777777777777777 1 1 1 111 1 111 1111 222222222222222222222 555555555555555555555 1111 11111 1111111 111 1 2222 11111111 1111 11 111 11 111 11111 222 11111 111 111 111111 11111 22 111111 111111 11
lowQualScore : 5 5 88 2 1 5 1 1 66 1 3333 5 5 5 1 3333 1 5 999999 1 1 66666666 3333 5 5 88 5 4444 1 88 1 5 77 000000 5 000 5 000000 3 66666 88888888 5555 0 3 1111111111111111 3 00 7 3 6666 3 3 1 3 6 7 88 3 99 0 222222222222222 6 2 3 7 22222 3 333 0 88 11 7 1111111 3 5 4444 6666666666 3 88 33333 6 555555 3333333333333333333333333333333333333333333333333333333333333333333333333333333333 777 1 3 33 0 0 1 2 777 777 55555 3 0 0 3 0 0 99999999999999999999999999999999999999999999999999 3 0 0 0 0 777 0 777 8 4444 999999999999999999999 1 999999999999999999999 1 4444 55 66666 99 11 3 0 8 3 0 5 1 0 1 99 6666666 6 2 99 0 8 444 8 0 0000 66666666 0 77777 5 66 7777 66 5 5 5 88 777 5 5 5 66 5 66 5 1 5 5 5 5 0 5 000 5 5 5 5 77 5 5 888 0 66 33 222 5 5 0 66 5 888 66 5 5 0 66 66666 66 5 000 5 0 1 6666 11111 66 1 4 4 4 5 777 000 111111 0 77 5 5 5 6 99 6 8 8 6 6 1 44444 5 5 0 6 00 999999 999999 3 11 8
lowQualScore : . . .. . . . . . .. . .... . . . . .... . . ...... . . ........ .... . . .. . .... . .. . . .. ...... . ... . ...... . ..... ........ .... . . ................ . .. . . .... . . . . . . .. . .. . ............... . . . . ..... . ... . .. .. . ....... . . .... .......... . .. ..... . ...... .................................................................................. ... . . .. . . . . ... ... ..... . . . . . . .................................................. . . . . . ... . ... . .... ..................... . ..................... . .... .. ..... .. .. . . . . . . . . . .. ....... . . .. . . ... . . .... ........ . ..... . .. .... .. . . . .. ... . . . .. . .. . . . . . . . . ... . . . . .. . . ... . .. .. ... . . . .. . ... .. . . . .. ..... .. . ... . . . .... ..... .. . . . . . ... ... ...... . .. . . . . .. . . . . . . ..... . . . . .. ...... ...... . .. .
lowQualScore : 5 5 55 5 0 5 0 0 55 0 5555 0 5 5 0 5555 0 0 555555 0 0 55555555 0000 0 0 55 0 0000 0 00 0 5 55 555555 5 555 5 000000 3 33333 33333333 0000 7 3 7777777777777777 3 00 3 3 0000 3 3 0 3 7 3 00 3 33 7 000000000000000 7 0 3 3 00000 3 000 7 33 00 3 0000000 3 0 0000 5555555555 3 33 33333 7 333333 0000000000000000000000000000000000000000000000000000000000000000000000000000000000 555 0 2 88 0 0 2 5 555 555 00000 2 0 0 2 0 0 88888888888888888888888888888888888888888888888888 2 8 0 0 0 555 0 555 0 2222 777777777777777777777 0 000000000000000000000 4 2222 88 77777 22 44 2 8 0 8 6 6 0 8 0 22 8888888 7 5 22 8 0 000 0 6 8888 44444444 2 88888 0 99 5555 99 0 0 0 22 000 0 0 0 99 0 99 0 0 0 0 0 0 7 7 000 7 7 7 1 99 0 0 888 4 99 88 888 0 0 4 99 0 888 99 0 0 1 99 22222 00 0 000 0 1 1 9999 11111 11 7 4 4 4 7 999 000 000000 7 11 7 7 7 7 22 7 0 0 7 7 0 33333 7 7 7 7 77 222222 222222 8 00 0
consensus : NAACTCTTGTCCACTTTCTGACAACATTACCACGTANAGCAGTGGAAAGNACACNAATAANACTTTTGGGGTATNGAAATCAAAGTGTTTGTTAGATAAAGTAATCAGAGCAGANAAACTGATGTTTCANCAATTTTGAGTTTGGTTGTAGAAATTTTNTATATTAGGAAAANTTTTAAATTACGCAAATTCCGAATTGTCAACAACTACTCTTAAGTAGTCGTTCTGGGTTTTCTTTTTTTAAATANAGTTGCATTAGTGGATAAGAAGTCACNTCCTATGGGCATTTTTTAAAAAATGCATTTGTTTTTTAATGTCAATGAAATATCTTAAACAAA-TATCTATA---AGCTTCAGACAT-----AGTGTGTCC-TA-TCGTTTC-TGTTTTTATGCATGCA-TAAAGAACGTGCCCTCA-ATTTTA-CATAC-TTGTGTCGC-AC-TC-CTGACACNGTTAC-ATACAGCAATTGCGTGGA-AAGTTACG-C-GATG----TTA-TTGCGAGTA-GGAAATTAATA--TTACTATTACT-AAAAAACTCACGTATTAAAG--GAAAGACTTGATGTT--TCTTCAG-TTTTAGACTCAAGTTTTATCATTTTTCTAGTAAATATAAACNTGTCGTGTAATTAAGC-GATTGGGAAAATCATG--TCAAAAATAACCTCACACA-----TTTTTTTTTAACTGAAACGACATTCTGCTAGTAGTTTAGAATT--CGTATNC------------------A-AAC--A--A-AAA------AT----TAA-----A-AT---------C------TAAA---CTAAANAATTGTATTTAAAAA--GTGTTGCACT-CCTGAC-ATGGAAAAGATAGCCCTATGG---GC---AAAAT-----ACAAC-TTTTT-CTGTCATC-CT-TCTTT-C----GA----AA-TAATGTC-TTCTA---T-GCTG-CTC-TTTTG--AAAAATAAAG-AAAAGGATTA-TATT-GGTAAAGTTAATTTTT---AAT-GGTGCCAGTCAAAAGTC---GAAATGTTG-CACTCCTG----ACCATGAGGG--------GTA----------TGCTCATTAAG-----AT----T--------GACTCCCTCAAAGTTTA----CATGGATGCCAGCCGGT-----TAC--TTTTTTCTTTTATTCAACAGAAG-AGATATTGCTTTAAAAGTTTAGATTTCTTTT--G-T-----AG-TTCAA--TTGATATTATTTAATTCTCAAGA-CAC---TTT-TTGCACAAATT---GGTCAT-------TCTT--T--GTG-TTG--CACT----CCT--GA-CATGG-TACTA-CA-TTTTTTTG--AGCTGA-GA-TTAAAGCC-A--TA-TCTT--AAG-CCTNAA-GT-GTTTC-A-TCATTCTTGGAA-T---TT-AAA-AGTA-TATA--GAT-TG-AAGATT---TTT--AAA--CAACAGTAT-TCTTTTAA-TATAG-ATCTTTTT--GTTTCGA-T---AGACAGG--AA-TTT-GAAAAAA--G---T-CAN-ATTTT-TT--AA-TGTCACAAAAAAGCGTTG-C--ACTCCTGAC-----ATTTTAGG--CGACGTTTT-AGGA-C-ACCAATCTATCA-TTCTT---TG---AG--A---TATCTCT-TA-GAT-TTTTGGAACACAC-ATAC-AC-AATATCAT-GAC-AC-AAGAT-A-TGG-----TA-TCCCTA-AAATCACCCAGACTGTTTGTAAAACATGT-AAA-TTGGTCAAATA------TGCC------TTGCCTCATTTTTTT--AAA-TCAC
Reference ( family-2058 ) : NAACTCTTGTCCACTTTCTGACAACATTACCACGTANAGCAGTGGAAAGNACACNAATAANACTTTTGGGGTATNGAAATCAAAGTGTTTGTTAGATAAAGTAATCAGAGCAGANAAACTGATGTTTCANCAATTTTGAGTTTGGTTGTAGAAATTTTNTATATTAGGAAAANTTTTAAATTACGCAAATTCCGAATTGTCAACAACTACTCTTAAGTAGTCGTTCTGGGTTTTCTTTTTTTAAATANAGTTGCATTAGTGGATAAGAAGTCACNTCCTATGGGCATTTTTTAAAAAATGCATTTGTTTTTTAATGTCAATGAAATATCTTAAACAAA-TATCTATA---AGCTTCAGACAT-----AGTGTGTCC-TA-TCGTTTC-TGTTTTTATGCATGCA-TAAAGAACGTGCCCTCA-ATTTTA-CATAC-TTGTGTCGC-AC-TC-CTGACACNGTTAC-ATACAGCAATTGCGTGGA-AAGTTACG-C-GATG----TTA-TTGCGAGTA-GGAAATTAATA--TTACTATTACT-AAAAAACTCACGTATTAAAG--GAAAGACTTGATGTT--TCTTCAG-TTTTAGACTCAAGTTTTATCATTTTTCTAGTAAATATAAACNTGTCGTGTAATTAAGC-GATTGGGAAAATCATG--TCAAAAATAACCTCACACA-----TTTTTTTTTAACTGAAACGACATTCTGCTAGTAGTTTAGAATT--CGTATNC------------------A-AAC--A--A-AAA------AT----TAA-----A-AT---------C------TAAA---CTAAANAATTGTATTTAAAAA--GTGTTGCACT-CCTGAC-ATGGAAAAGATAGCCCTATGG---GC---AAAAT-----ACAAC-TTTTT-CTGTCATC-CT-TCTTT-C----GA----AA-TAATGTC-TTCTA---T-GCTG-CTC-TTTTG--AAAAATAAAG-AAAAGGATTA-TATT-GGTAAAGTTAATTTTT---AAT-GGTGCCAGTCAAAAGTC---GAAATGTTG-CACTCCTG----ACCATGAGGG--------GTA----------TGCTCATTAAG-----AT----T--------GACTCCCTCAAAGTTTA----CATGGATGCCAGCCGGT-----TAC--TTTTTTCTTTTATTCAACAGAAG-AGATATTGCTTTAAAAGTTTAGATTTCTTTT--G-T-----AG-TTCAA--TTGATATTATTTAATTCTCAAGA-CAC---TTT-TTGCACAAATT---GGTCAT-------TCTT--T--GTG-TTG--CACT----CCT--GA-CATGG-TACTA-CA-TTTTTTTG--AGCTGA-GA-TTAAAGCC-A--TA-TCTT--AAG-CCTNAA-GT-GTTTC-A-TCATTCTTGGAA-T---TT-AAA-AGTA-TATA--GAT-TG-AAGATT---TTT--AAA--CAACAGTAT-TCTTTTAA-TATAG-ATCTTTTT--GTTTCGA-T---AGACAGG--AA-TTT-GAAAAAA--G---T-CAN-ATTTT-TT--AA-TGTCACAAAAAAGCGTTG-C--ACTCCTGAC-----ATTTTAGG--CGACGTTTT-AGGA-C-ACCAATCTATCA-TTCTT---TG---AG--A---TATCTCT-TA-GAT-TTTTGGAACACAC-ATAC-AC-AATATCAT-GAC-AC-AAGAT-A-TGG-----TA-TCCCTA-AAATCACCCAGACTGTTTGTAAAACATGT-AAA-TTGGTCAAATA------TGCC------TTGCCTCATTTTTTT--AAA-TCAC
gi|1 : AAACAAACTATCTGTATTTAACTGCAAACATTATTCAG-GTGATC-TA-CCAATTC-TATATTTATGCATGCA-TAAAAAACGTG--GTCA-ATTTCATCA-AC-TTTTGTC-C-ACTTT-CTGACAATATTACTATGTAG-A---GCGTGGA-AAG-TACA-CAAATAAAACTT--TTG-GAGTATTGAAATCAA------AGTGTTTTT-AGAAAA-----GTAATCGAGCAGAAAAAC-TGATGTT--TCATCAA-TTTT
gi|1 : tatgAACTTTTGTCCACTTTCTGACAATATTACTATGTAGAGC-GTGGAAAGTACACAAATAAAACTTTTGGAGTATTGAAATCAAAGTGTTT-TTAGA-AAAGTAATC-GAGCAGAAAAACTGATGTTTCATCAATTTTGAGTTTGGTTGTAGAAATTTTGTATATTAGGAAAATTTTTAAATTACATAAATTCCGAATTGTCAACAACTACTCT--AGTAGTCGTTCTGGGTTTTCTTTTTTTAAATAAAGTTGCATTAGTGGATAAGAAGTCACATCC-ATGGGCATT------AAAATGCATTTGTTTTTTAATGTCAA-GAAATATCTTAAACAAA-TATCTATA---AGCTTCAGACAT-----AGTGTGTCCTTATTCGTTTCGTGTTTTTATGCATGCATTAAAGAACATATCCTCATGTTTTA-CATACGTTGTGTTGTGAC-TCACTGACACAGTTAC-ATACAGCAATTACA-GGATAAATTATGCC-GATG----TTAGTTGCAAATA-GGAAATTAATAATTTACTATTACTAAAAAAACTCACATATTAAAG--GAAAGACTTGATGTTGATCTCTAGTTTTTAGACTCAAGTTTTATCATTTTTCTAGTAAATATAAACATGTCGTGTAATTAAGCAGATGAGAAAAATCATGGATCAAAAATAACCTCACACATTTTTTTTTTTTTTTACTGAAACGACATTCTGCAAGTAATTTAGAATT--TGTATGCTATTGAATTAATTACCAGA-AAC--ATGATAAA------AT----TAATATTTA-ATGATAAAAAGT------TAAG---CTAAAGAATTGTATTTAAAAA--GTGTTGCACTGCCTGACGATAGAATAGATAGCTCTGTGGTAAGCTATAAAAT-----ACAACTTTTTT-CTA-CATCACT-TCTTTAC----AATGTTAA-T-GTGTCTTTCTA---TGGCTG-CTCGTTTTGACAAAAATAAAGAAAAAGGATTATTATTAGGTAAGGTTAAATTTTCGGAATAGGTGCCAGTCAAAAGTTCAAGGAATGTTGCCACTTCCGCTGAACCATGAGGG--------GAA----------TATTCATTAAGGCTTCAT----TAGCAGTTGGACTTCCTAAAGG--TA----CATGGATGCCAGCCAGT-----TACTTTTTTTTCTTTTATTCAAGAGAAGAAGATATGGC-TTAAAAGTTTAGTTCTCTTTT--GAT-----AGTTTCAAATTTTATATTATTT-ATTTTCAAGACCACTTTTTT-TTGCACAAATTG--GGTCAT-------TTTT--TGAGTG-TTG--CACTCA--CCTTGGA-CATGGTTACTA-CA--TTTTTTG--AGCTAA-GATTTAACACC-ATTTA-TCTTG-AAGCCCTAAA-GT-GTTTC-C-TCATTCTTTGAA-T---TTAAAA-AGTATTATA--GATGTG--AGATTTTCTTT--AAAACCAACAGTATATCTGTTAATTATAG-ATCTTTTT--GTTCCGATT---ATACAGG--AA-TTTGGAAAAAA--G---A-CAC-ATTTT-TT--AATTGTCACAAAAAAGCGTTG-C--ACTCCTGAC-----ATTTTAGG--AAACTTTTTCAGGACC-ACCAATCTATCATTTCTTTG-TG---AG--A---TATCTCTGTGCGAT-TTTTGGTACACACGATACAACAAATATCATGGACAACAAAGAT-ATTGG-----TATTCCCTA-AAATCATTCA-ACTGTTTGTAAAACATGA-AAT-TTGGTCAAATATTGCTTTGCCCTCATGTTGCCTCATTTTTTTTGAAA-CCACgagtttggttgtagaaattttgtatattaggaaaatttttaaattacataaattccgaattgtcaacaactactctagtagtcgttctgggttttctttttttaaataaagttgcattagtggataagaagtcacatccatgggcattaaaatgcatttgttttttaatgtcaagaaatatcttaaacaaatatctataagcttcagacatagtgtgtccttattcgtttcgtgtttttatgcatgcattaaagaacatatcctcatgttttacatacgttgtgttgtgactcactgacacagttacatacagcaattacaggataaattatgccgatgttagttgcaaataggaaattaataatttactattactaaaaaaactcacatattaaaggaaagacttgatgttgatctctagtttttagactcaagttttatcatttttctagtaaatataaacatgtcgtgtaattaagcagatgagaaaaatcatggatcaaaaataacctcacacatttttttttttttttactgaaacgacattctgcaagtaatttagaatttgtatgctattgaattaattaccagaaacatgataaaattaatatttaatgataaaaagttaagctaaagaattgtatttaaaaagtgttgcactgcctgacgatagaatagatagctctgtggtaagctataaaatacaacttttttctacatcacttctttacaatgttaatgtgtctttctatggctgctcgttttgacaaaaataaagaaaaaggattattattaggtaaggttaaattttcggaataggtgccagtcaaaagttcaaggaatgttgccacttccgctgaaccatgaggggaatattcattaaggcttcattagcagttggacttcctaaaggtacatggatgccagccagttacttttttttcttttattcaagagaagaagatatggcttaaaagtttagttctcttttgatagtttcaaattttatattatttattttcaagaccacttttttttgcacaaattgggtcattttttgagtgttgcactcaccttggacatggttactacattttttgagctaagatttaacaccatttatcttgaagccctaaagtgtttcctcattctttgaatttaaaaagtattatagatgtgagattttctttaaaaccaacagtatatctgttaattatagatctttttgttccgattatacaggaatttggaaaaaagacacattttttaattgtcacaaaaaagcgttgcactcctgacattttaggaaactttttcaggaccaccaatctatcatttctttgtgagatatctctgtgcgatttttggtacacacgatacaacaaatatcatggacaacaaagatattggtattccctaaaatcattcaactgtttgtaaaacatgaaatttggtcaaatattgctttgccctcatgttgcctcattttttttgaaaccaccc
gi|10 : tatgaaacaaactatctgtatttaactgcaaacattattcaggtgatctaccaattctatatttatgcatgcataaaaaacgtggtcaatttcatcCAT-------TCTT--T--GCG-TTG--CACT----CCT--GA-CATGG-TCTTC-CA-TTTTTTTG--AGCTGA-GA-CTAAAGCC-A--CA-TCTT--CAG-CCTAAA-GT-GTTTC-A-TCATTCTTGGAA-T---TT-AAA-AGCA-TAAA--GAC-TG-AAGATT---TAT--ATA--CAACAGTA--TCTTTTcc
gi|11 : CTGAC-----AGTTTAGG--CAACATTTT-AGGA-C-ACCAATCTATCA-TTCTT---TG---AG--ATATTATCTCT-TA-GAT-TTTTGGAACACAT-ATA
gi|12 : aattttgagaacaaaatcacaagagtcccatttggcgccccgtaCCACAAAATTGA----TATGGTTACCAGCTGGT------AC--CCTTTTCTTT-----AACAGAAG-AGGTGTTGCTTTATAAGTTT---TTCCTTTTTCG-TACCGGAG-TTAAA--TTGATATTAT
gi|13 : ctTTTTAG--ATAA-ATATATTT--GTTTCAA-T---CGACAGG--AT-TAT-G-AAATA--G---T-CAT-ATTTT-TT---A-TGTAACAAAA------TG-A--ACTC--AAC------TTTGAGG--TAATGTT----GGA-A-ATTAAT
gi|14 : ATGTTG-CAGTCCTA----GTCATGAGGG--------GTACATGTACTAGTACTCATTAA------AT----T--------GACTCCCACAAAGTATATAATTATGGATACCAG-CAGT-----TAT--TT
gi|15 : GTCAT-------TCTT--T--TTG-TTG--CACT----CCG--GA-CATTG-TACTA-CA-TTTTGTTG--AGCTGA-GA-TTAAAGCC-A--TA-TCTT--AAG-CCTAAA-GT-GTTTC-A-T
gi|16 : tgtatG-----TA-TCCCTA-AAATCACCAAGTCTGTTTGTAAAACGTGT-ACATTTGGTAAAATG------TGCC------TTGCCTCATTTTTTT--AAAGTCAC
gi|17 : -A-TAG-----TA-TCTTTTTAAATCACCCAGACTGTTTGT--------T-AAA------CAAATA------TGCC------TTGCCTCATCTTGTT--AAA-TCAcct
gi|2 : AACTCT-GTCTACTT-CTGACAACA--ACCACTTATAGCAGTGGAAAGGACATCAATAAT-TTTTTGGGGTATGGAAATCAA----TTTGTTAGATAAAATAATTAGAGCAGATAAACT----TTTCAACAATTTT-AGT------GTAAAAATTTTTTATATTAAGAAAAGT--------ATGCAAAT----AATTGTCAA-AA-TACTCTTAAGTAGTC-TTCTGAGTTTT----TTTTAAATACAGTTGCATTAGTGGATAA--AGTCACCTTCTATG--CATTTTTTAAAAAATGCATT-GTTTTTTAAT---AATGAAA--------ACAAC-TATCTATA---A-CTTCAGACAT-----A-TGTGTCC--A-TCATTTC-TGTTTTTATGCAT---------------CCCTCA-ATTTTA--ATAC-TTGTGTTGC-AC-TC-CTGACACCGTTAC-ATACAGCAATTGTATGGA-AA-TTATG-T-GA-G----TTA-TTGCGA-TA-GGAA--TA-TA--TTACTATTACT-AAAA--CTCACATATTAAAG--GAA---CTTG-------TCTTCAG-TTTTAGACTCAAGTTTTAT-ATTTTTCTA----ATAT---CTT----TGTAATTAAGC-AATTGGGAAAATCATA--TCAAAAATAACCTCACACA-----TTTCTTTTTAACTGAAACAA-AT-CTGCTAGTAGTTTAGAATT--CATATAC------------------A-AAC--A--A-AAA------AT----TAA-----A-AT---------C------TAAA---CTAAAGAATTGTATTTAAAAA--GTGTTGCACT-CCTGAC-ATGGAAAAGATAGCCCTATGG---GC---AATAT-----ACAAC-TTTTT-CTGTCATC-CT-TTTTA-C----AA----AAATAATG-C-TTCTAACTT-GC---CTC-TTTTG--AAAAATAAAG-AAAAGGATTA-TATT-GGTAAAGTTAATTTTT---AAT-GGTGCCAGTCAAAAGTC---AAAATGTTG-CACTCCTG----AACATGAGGG--------GTA----------TGCTCATTAA------AT----T--------GACTCCTTAAAAGTTTA----CATGGATGCCAGC-AGT-----TAC--TTTTTTCTTTTATTTAACAGAAG-AGATATTGTTTTAAAAGTTTAGATTTCTTTT--G-T-----AG-TTCAA--TTGATATTATTTAATACTCAAGA-CAT---TTT-TTGCACAAATT---GGTCAT-------TCTG--T--ATG-TTG--CACT----CCT--GA-CATGG-TACTA-CA-TTTTTTTTTTAGCTGA-GA-TTAAAGCC-A--TA-TGTT--TAG-CCTCAA-GT-GTTTC-A-TCATTCTTTGAA-T---TT-AAA-AGTA-TATA--GAT-TG-AAGATT---TTT--TAG--CAACAGTAT-TTTTTAAA-TTGAG-ATATTATT--GTTTCGA-T---AGACAAG--AA-TTT-GAAAAAA--G---A-CAT-ATTTTTTT--AA-TGTCACAAAAAAGCGTTG-C--ACTCCTGAC-----ATTTTAGG--CAACGTTTT-AGGA-C-ACCAATCTATCA-ATCTT---TG---AG--A---TATCTCT-TG-GAG-TTTTGGAACACAC-ATAC-AC-AATATCAT-GAC-AC-AAGAT-A-TGG-----TA-TCCTTA-AAAGCACACAGACTGTTTGTAAAACATGT-AAA----ATAAAATA------TGCT------TCGCCTCA-TATTTT--AAA-CCAC
gi|3 : aATT--C-CATCT------------------A-AAC--A--A-GAG------ATGTGATAA-----ATAT---------C------TAAA---TTAATTAATTGTATTTAAAAA--GTATTGCACT-CCTGAC-ATAAAAAAGATAGCCCTTTGG---GC---AAAATTTTTTAC--T-TTTTT-CTGTCAAC-TT-TTTTT-CCTCAAA----AA-TAATGTC-TTCTA---T-GTTATCTG-TTTTG---AAAATGAAA-AAAAAGATTA-TATT-GGTAAAGTTAATTTTG---AAT-GGTGTCTGCCAAAAGTC---AAAATGTTG-ACCTCCTG----ACTATGAAAG--------GTA----------TGCTCATTAA------AT----T--------GGCTACCTCAAAGTTTA----CATGGAGGCCAGCAGGTAAATATAC--TTTTTCCTTTTCTTGAACAGA---AGAT-----------AGTTTAGATTTCTTTT--G-T-----AG---------------TATTTAATTTTCAAAA-CAC---TTT-T-----AAA--------CA----------CT--T--GTA-TTG--CACT----CCT--GA-CATAG----TA-CA-TTTGTTTG----------------AGCC-A--TA-TCTT--AAG-CCCCAA-GT-GTTTC-A-TCATTCTTGGAA-T---TC-AAA-AGTA-TATA--AAT-TG-AAGATA---TTT--AAA--CAACAGTTT-TCTTTTAA-TATAG-ATCTTTTTTGGTTTTAA-T---AGACAGA--GA-TTT-GAAAAAA--G---T-TAC-ATTTC-TT---A-T----------AGTGTTT-T--ACTCTTGAC-----ATTTTAAG--CGACGTTTT-AGGC-C-ACTA--CT-TCA-ATGTG---TATATAC--A---TGTATC--TA-GATGTTTTGGAACACAT-ATAC-AC-AATATCAT-GAC-TC-AACAT-A-T-G-----T--TTCCTA-AAATCCCTCAGTATGTTTGTAAGACATGTAAAA-TTGGTCAAATA------TATT------TTGCCTCA
gi|4 : TTTC--G-C-----AG-TTAAA--TTGATTATATTTAATTCTCAGGA-CAC---TTT-T-ACACTACTT----------------TATT--T--GAG-TT-------------T---A-CATGG-TACCA-CAATTTTTTTT--ATCTGC-GA-TTAAAGCC-A--AG-TCTT--AAT-CTTCAA-TT-TTTTC-A-CCAATGTTGGAA-T---TA-AAA-AATA-TATA--GAT-TG-ACCATT---TTT--AAA--CAACCATTT-TCTTTTAA-TATGG-ATCATTTT--CTTTTGA-T---TGACAGG--AC-TTT-GAAAAAA--G---T-AAA-AATTT------A-TGTCACAAAAATATATTG-C--ACTTCTGAT-----ATTTTTAG--CGACGTTTT-AGAA-C-ACCAATTCATCA-TTTTCGTATA---AGATA---TATATGT-TA-G-T-TATTGAAATACAC-ATAC-AC-AATATCAT-GAC-AT-AACAT-A-TGG-----TA-TACCTG-CAATCACCCATACTGTTTGTAAAAGATGT-AAAGTTGGTCAAATA------CGCA------TTGCCTTGCTTCTTG--AAA-TCAC
gi|5 : CTCCTG----GCCATGAGGG--------GTA----------TGCTCATTAAG-----ATAAATT--------GACTTCCTCAAAGTTTA----CATGGATGCCAGCCAGT-----TAC--TTTTTTCTTTTATTCAACAGAAG-AGATACTGCTTTAAAAGTTTAGATTTCTTTT--G-T-----AG-TTCAA--TTGATATAATTTATTTCTCAAGA-CAC---TTTATTGCACAAATT---GGTCAT-------TTTT--G--GTG-TTG--CACT----CCT--GA-CATGG-TACTA-CA-TTTTTTTG--AGCTGA-GA-TTAAAGCC-A--TA-TCTTA-AAG-CCTAAAGGTGGTTTCAA-AGATTCTTTGAA-T---TT-AAAGAGTA-TA-AGTGAT-TGAAAGATT---TTTTAAAA--CAATAGTA--TCTTTTAA-TATAG-ATCTTTTT--GTTTTGA-T---AGACAGG--AGTTTT-GAAAAAA--GC--T-CAA-ATTTT-TTAAAA-TGTCACAAAAAAGCGTTG-C--ACTCCTGAc
gi|6 : TGTAATTAAGC-GATTGGGGAAATCATG--TCAAAAATAACCTGTCACA-----TGTTTTGTTAG-TGAAAC-ACA-TCTGCTAGTAGTTTGAAATTAAAATATTA------------------ATAATTGA--A-AAAAATAATAT----TAA-----A-AT---------TCAGTGATAAAAATCTAAACTATTGAA---AAAAAATGTATTGCACT-CCTTTC-CTGGAAAACACAGTCCTAT-G---GC---AAAAT-----AGAAC-CTTTTGTTGTCATC-CTCTCTTT-T----GA----AA--AAT------------------------------AAA------G-AAAAGGATTA-TATT-AGTAAACTTAATTTTT---AAT-GGTGCCAGTCAAAAGTC---GAAATGTTG-CACTCCTG----ACCATGACGGTTACAATTGTA----------TG-TCATT
gi|7 : catttcttACAAATTTGGGGTCATGGCCGGGTCTTGGT--GTGATTGGGCACCGGGCCTT--GATCATGG-TACTAGCA------------GGTGAAGG-GTAAAGCCCA--TGGTCTTTGGAG-CTTCAC-GT-GTGGC-AATCATTCTTGGAAATGGGTT-AGG-AGGA----G--GAT-TG-GCGGTG---T----AAATGCAACATTTC-CCTTTTAA-TATAGGATCTT-----GTTTTGA-TGGGAGACAGGGAAA-TGG-GCAAGAA--GAGGTGCAGTAGTTT-TA--GG-TGTCTCAAAAAAGTGTTGGCGGACTCCTGAC-----ATTTTAGGAGCGATGTTTT-AGGA-C-ACCGAT
gi|8 : -TG-AAGATT---TTT--AAG--CAACAGTAC-TTTTTCAA-TATAG-ATCATTTT--GTTTTGG-T---AGACAGG--AA-TTT-AAAAAAAATG---T-CAA-ATCTT-TTA-AA-TGTCACAAAAAAGTGTTA-C--ACTCCTCAC-----ATTTTATA--CAACGTTTT-TGG--C-ACCAATTTATCA-TACCT---TG---AG--A---AATCTCG-TA-GAT-TTTTGGAACAAAC-ATAG-AA-AATATCGT-G
gi|9 : TTG-T--ATTCCCGACTCTTTCTTTTGG-----ACGCTTT-AAGA-CTA--AATTCATCA-TTTTG---TG---AG--G---TATATCT-TA-GAT-TTT-GGAACATAC-ATCC-A----TACCA----C-AC-CAGATTA-GGGGCATATA-TCCATA-AAATCACCCAGACCGTTTGTAAAGC
blockSeqs : . . . T T A G C T G . G T A T . A . . T G . . . . TA . . C . C T . TTTTAA . . T . . AG AGT TTAT G GCATTAAAGAACATAT T C T G TGTG . A A . C A AT T AT CCGATGTTAG C A . A ATAAT A AAC . AG T ATGTTGA T . . CTT . . . C AAAT AAAATATTAATAATTGAAAAAAATAATATTAAAATTCAGTGA AAT G T AT . . A G . . TTTTT A . G T . C CCTCAAAAATAATGTCTTCTATGTTATCTGTTTTG A . . . . . . . . GTACATGTACTAG C GATAAATT C TAAT TG AAATA . TA T . G T T A TC TACCGG . A . . . A T TGGG TGGCCGGG GGT A GG GGGC . T . G AT TTA A . C . G TG . A G G A A A GGG . G . A GT . A . TA TG AT . G TG . GGG GA T . AT AGGTG GT T AAA . C GCGG TCTTT AG A . . T . GTA TAT ATAT T . G . . C . . . T . A GCATA . T A TT . . T . G
blockSeqs : . A AT A . C . . T . TGC . . C . C A A . T TGAGTTA C . . . TA . C . . T . . . . . . ACAT CCATCTAAACAAGAGATGTGATAAATATC . T T . . . T G . . . A . . T . . CAAAAATAATGCTTCTAACTTGCCTCTTTTGA A . . . . . . . . TTACAATTGTA C ATT C . CA . . TC G . A T A A . T . C . . . . T G T T . . . . . . . T A . . . . . A . A . . . . . . . . . T . . . . . . TT . . . . . . . . . CT T . AA . T A . . A . . . . . . ATA T . . . . C . . . . . G . . . . GT . . T . .
blockSeqs : CATATACAAACAAAAAATTAAAATC . C . . . . A . . . . . . . T . . TGAAAAATA . . . . . . . . . GTA C ATT A . AG . . TA C . A T A A . T . A . . . . . G T T . . . . . . . T A . . . . . . . C . . . . . . . . . T . . . . . . TT . . . . . . . . . T T . A . T C . . A . . . . . . A T . . . . C . . . . . G . . . . T . . C . .
blockSeqs : . . GTA C ATT T . CA . . . . . . . . . . C . C . . . . . . T T . . . . . . . T A . . . . . . . C . . . . . . . . . T . . . . . . TC . . . . . . . . . A C . G . C T . . G . . . . . . A G . . . . A . . . . . G . . . . . . . . . .
blockSeqs : . GTA . . A . . . T . . . . T T . . . . . . . T A . . . . . . . C . . . . . . . . . . . . . . . . AC . . . . . . . . . T A . . . T C . . G . . . . . . A T . . . . . . . . . . . . . . . .
blockSeqs : . T . . . . . . . T . . . . . . . . A . . . . . . . . . . . . . . . . A . . . . . . . . . T A . . . T C . . G . . . . . . G . . . . . . .
blockSeqs : . G . . . . . . . . . . . . . . . . C . . . . . . . . . A . . . . . . . . . T A . . . . C . . A . . .
blockSeqs : T . . . . . .
blockSeqCons : **** ATT****************** ** T****** ** *** G*** T**** **** ** T* ** ** *** ** TT* A** *** T* C* T* ****** ****** **
originalCons : NAACTCTTGTCCACTTTCTGACAACATTACCACGTANAGCAGTGGAAAGNACACNAATAANACTTTTGGGGTATNGAAATCAAAGTGTTTGTTAGATAAAGTAATCAGAGCAGANAAACTGATGTTTCANCAATTTTGAGTTTGGTTGTAGAAATTTTNTATATTAGGAAAANTTTTAAATTACGCAAATTCCGAATTGTCAACAACTACTCTTAAGTAGTCGTTCTGGGTTTTCTTTTTTTAAATANAGTTGCATTAGTGGATAAGAAGTCACNTCCTATGGGCATTTTTTAAAAAATGCATTTGTTTTTTAATGTCAATGAAATATCTTAAACAAA-TATCTATA---AGCTTCAGACAT-----AGTGTGTCC-TA-TCGTTTC-TGTTTTTATGCATGCA-TAAAGAACGTGCCCTCA-ATTTTA-CATAC-TTGTGTCGC-AC-TC-CTGACACNGTTAC-ATACAGCAATTGCGTGGA-AAGTTACG-C-GATG----TTA-TTGCGAGTA-GGAAATTAATA--TTACTATTACT-AAAAAACTCACGTATTAAAG--GAAAGACTTGATGTT--TCTTCAG-TTTTAGACTCAAGTTTTATCATTTTTCTAGTAAATATAAACNTGTCGTGTAATTAAGC-GATTGGGAAAATCATG--TCAAAAATAACCTCACACA-----TTTTTTTTTAACTGAAACGACATTCTGCTAGTAGTTTAGAATT--CGTATNC------------------A-AAC--A--A-AAA------AT----TAA-----A-AT---------C------TAAA---CTAAANAATTGTATTTAAAAA--GTGTTGCACT-CCTGAC-ATGGAAAAGATAGCCCTATGG---GC---AAAAT-----ACAAC-TTTTT-CTGTCATC-CT-TCTTT-C----GA----AA-TAATGTC-TTCTA---T-GCTG-CTC-TTTTG--AAAAATAAAG-AAAAGGATTA-TATT-GGTAAAGTTAATTTTT---AAT-GGTGCCAGTCAAAAGTC---GAAATGTTG-CACTCCTG----ACCATGAGGG--------GTA----------TGCTCATTAAG-----AT----T--------GACTCCCTCAAAGTTTA----CATGGATGCCAGCCGGT-----TAC--TTTTTTCTTTTATTCAACAGAAG-AGATATTGCTTTAAAAGTTTAGATTTCTTTT--G-T-----AG-TTCAA--TTGATATTATTTAATTCTCAAGA-CAC---TTT-TTGCACAAATT---GGTCAT-------TCTT--T--GTG-TTG--CACT----CCT--GA-CATGG-TACTA-CA-TTTTTTTG--AGCTGA-GA-TTAAAGCC-A--TA-TCTT--AAG-CCTNAA-GT-GTTTC-A-TCATTCTTGGAA-T---TT-AAA-AGTA-TATA--GAT-TG-AAGATT---TTT--AAA--CAACAGTAT-TCTTTTAA-TATAG-ATCTTTTT--GTTTCGA-T---AGACAGG--AA-TTT-GAAAAAA--G---T-CAN-ATTTT-TT--AA-TGTCACAAAAAAGCGTTG-C--ACTCCTGAC-----ATTTTAGG--CGACGTTTT-AGGA-C-ACCAATCTATCA-TTCTT---TG---AG--A---TATCTCT-TA-GAT-TTTTGGAACACAC-ATAC-AC-AATATCAT-GAC-AC-AAGAT-A-TGG-----TA-TCCCTA-AAATCACCCAGACTGTTTGTAAAACATGT-AAA-TTGGTCAAATA------TGCC------TTGCCTCATTTTTTT--AAA-TCAC
finalCons : NAACTCTTGTCCACTTTCTGACAACATTACCACGTANAGCAGTGGAAAGNACACNAATAANACTTTTGGGGTATNGAAATCAAAGTGTTTGTTAGATAAAGTAATCAGAGCAGANAAACTGATGTTTCANCAATTTTGAGTTTGGTTGTAGAAATTTTNTATATTAGGAAAANTTTTAAATTACGCAAATTCCGAATTGTCAACAACTACTCTTAAGTAGTCGTTCTGGGTTTTCTTTTTTTAAATANAGTTGCATTAGTGGATAAGAAGTCACNTCCTATGGGCATTTTTTAAAAAATGCATTTGTTTTTTAATGTCAATGAAATATCTTAAACAAA-TATCTATA---AGCTTCAGACAT-----AGTGTGTCC-TA-TCGTTTC-TGTTTTTATGCATGCA-TAAAGAACGTGCCCTCA-ATTTTA-CATAC-TTGTGTCGC-AC-TC-CTGACACNGTTAC-ATACAGCAATTGCGTGGA-AAGTTACG-C-GATG----TTA-TTGCGAGTA-GGAAATTAATA--TTACTATTACT-AAAAAACTCACGTATTAAAG--GAAAGACTTGATGTT--TCTTCAG-TTTTAGACTCAAGTTTTATCATTTTTCTAGTAAATATAAACNTGTCGTGTAATTAAGC-GATTGGGAAAATCATG--TCAAAAATAACCTCACACA-----TTTTTTTTTAACTGAAACGACATTCTGCTAGTAGTTTAGAATT--CGTATNC------------------A-AAC--A--A-AAA------AT----TAA-----A-AT---------C------TAAA---CTAAANAATTGTATTTAAAAA--GTGTTGCACT-CCTGAC-ATGGAAAAGATAGCCCTATGG---GC---AAAAT-----ACAAC-TTTTT-CTGTCATC-CT-TCTTT-C----GA----AA-TAATGTC-TTCTA---T-GCTG-CTC-TTTTG--AAAAATAAAG-AAAAGGATTA-TATT-GGTAAAGTTAATTTTT---AAT-GGTGCCAGTCAAAAGTC---GAAATGTTG-CACTCCTG----ACCATGAGGG--------GTA----------TGCTCATTAAATT------------------GACTCCCTCAAAGTTTA----CATGGATGCCAGCCGGT-----TAC--TTTTTTCTTTTATTCAACAGAAG-AGATATTGCTTTAAAAGTTTAGATTTCTTTT--GT------AG-TTCAA--TTGATATTATTTAATTCTCAAGA-CAC---TTT-TTGCACAAATTG---GTCAT-------TCTTT----GTG-TTG--CACT----CCT--GA-CATGG-TACTA-CAT-TTTTTTG--AGCTGA-GA-TTAAAGCC-A--TA-TCTT--AAG-CCTNAA-GT-GTTTC-A-TCATTCTTGGAA-T---TT-AAA-AGTA-TATA--GAT-TG-AAGATT---TTT--AAA--CAACAGTTT-TCTTTTAA-TATAG-ATCTTTTT--GTTTCGA-T---AGACAGG--AA-TTT-GAAAAAA--G---T-CAN-ATTTT-TTA--A-TGTCACAAAAAAGCGTTG-C--ACTCCTGAC-----ATTTTAGG--CGACGTTTT-AGGA-C-ACCAATCTATCA-TTCTT---TG---AG--A---TATCTCT-TA-GAT-TTTTGGAACACAC-ATAC-AC-AATATCAT-GAC-AC-AAGAT-A-TGG-----TA-TCCCTA-AAATCACCCAGACTGTTTGTAAAACATGT-AAAT-TGGTCAAATA------TGCC------TTGCCTCATTTTTTT--AAA-TCAC
Alignments
lowQualScore : 1111111111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 1 1 11 1 11 2222 1 1 1 2222 1 222222 33333333 2222 1 1 11 1 2222 11 1 11 333333 1 222 1 333333 1 22222 33333333 2222 1 3333333333333333 1 22 1 1111 1 1 1 1 11 444444444444444 1 1 33333 1 111 11 11 2222222 1 1 2222 2222222222 1 11 33333 111111 3333333333333333333333333333333333333333333333333333333333333333333333333333333333 111 11 1 1 111 111 22222 1 1 1 1 77777777777777777777777777777777777777777777777777 1 1 1 111 1 111 1111 222222222222222222222 44444444444444444 1111 11111 1111111 111 1 2222 11111111 1111 11 111 11 1111 11111 222 11111 111 111 111111 11111 22 111111 111111 11
lowQualScore : 5 5 88 2 1 5 1 1 66 1 3333 5 5 5 1 3333 1 5 999999 1 1 66666666 3333 5 5 88 5 4444 1 88 1 5 77 000000 5 000 5 000000 3 66666 88888888 5555 0 3 1111111111111111 3 00 7 3 6666 3 3 1 3 6 7 88 3 99 0 222222222222222 6 2 3 7 22222 3 333 0 88 11 7 1111111 3 5 4444 6666666666 3 88 33333 6 555555 3333333333333333333333333333333333333333333333333333333333333333333333333333333333 777 1 3 33 0 0 1 2 777 777 55555 3 0 0 3 0 0 99999999999999999999999999999999999999999999999999 3 0 0 0 0 777 0 777 8 4444 999999999999999999999 1 55555555555555555 1 4444 55 66666 99 11 3 0 8 3 0 5 1 0 1 99 6666666 6 2 99 0 8 444 8 0 0000 66666666 0 77777 5 66 7777 66 5 5 5 88 777 5 5 5 66 5 66 5 1 5 5 5 5 0 5 000 5 5 5 5 77 5 5 888 0 66 33 0000 5 5 0 66 5 888 66 5 5 0 66 66666 66 5 000 5 0 1 6666 11111 66 1 4 4 4 5 777 000 111111 0 77 5 5 5 6 99 6 8 8 6 6 1 44444 5 5 0 6 00 999999 999999 3 11 8
lowQualScore : . . .. . . . . . .. . .... . . . . .... . . ...... . . ........ .... . . .. . .... . .. . . .. ...... . ... . ...... . ..... ........ .... . . ................ . .. . . .... . . . . . . .. . .. . ............... . . . . ..... . ... . .. .. . ....... . . .... .......... . .. ..... . ...... .................................................................................. ... . . .. . . . . ... ... ..... . . . . . . .................................................. . . . . . ... . ... . .... ..................... . ................. . .... .. ..... .. .. . . . . . . . . . .. ....... . . .. . . ... . . .... ........ . ..... . .. .... .. . . . .. ... . . . .. . .. . . . . . . . . ... . . . . .. . . ... . .. .. .... . . . .. . ... .. . . . .. ..... .. . ... . . . .... ..... .. . . . . . ... ... ...... . .. . . . . .. . . . . . . ..... . . . . .. ...... ...... . .. .
lowQualScore : 5 5 55 5 0 5 0 0 55 0 5555 0 5 5 0 5555 0 0 555555 0 0 55555555 0000 0 0 55 0 0000 0 00 0 5 55 555555 5 555 5 000000 3 33333 33333333 0000 7 3 7777777777777777 3 00 3 3 0000 3 3 0 3 7 3 00 3 33 7 000000000000000 7 0 3 3 00000 3 000 7 33 00 3 0000000 3 0 0000 5555555555 3 33 33333 7 333333 0000000000000000000000000000000000000000000000000000000000000000000000000000000000 555 0 2 88 0 0 2 5 555 555 00000 2 0 0 2 0 0 88888888888888888888888888888888888888888888888888 2 8 0 0 0 555 0 555 0 2222 777777777777777777777 0 00000000000000000 4 2222 88 77777 22 44 2 8 0 8 6 6 0 8 0 22 8888888 7 5 22 8 0 000 0 6 8888 44444444 2 88888 0 99 5555 99 0 0 0 22 000 0 0 0 99 0 99 0 0 0 0 0 0 7 7 000 7 7 7 1 99 0 0 888 4 99 88 2222 0 0 4 99 0 888 99 0 0 1 99 22222 00 0 000 0 1 1 9999 11111 11 7 4 4 4 7 999 000 000000 7 11 7 7 7 7 22 7 0 0 7 7 0 33333 7 7 7 7 77 222222 222222 8 00 0
consensus : NAACTCTTGTCCACTTTCTGACAACATTACCACGTANAGCAGTGGAAAGNACACNAATAANACTTTTGGGGTATNGAAATCAAAGTGTTTGTTAGATAAAGTAATCAGAGCAGANAAACTGATGTTTCANCAATTTTGAGTTTGGTTGTAGAAATTTTNTATATTAGGAAAANTTTTAAATTACGCAAATTCCGAATTGTCAACAACTACTCTTAAGTAGTCGTTCTGGGTTTTCTTTTTTTAAATANAGTTGCATTAGTGGATAAGAAGTCACNTCCTATGGGCATTTTTTAAAAAATGCATTTGTTTTTTAATGTCAATGAAATATCTTAAACAAA-TATCTATA---AGCTTCAGACAT-----AGTGTGTCC-TA-TCGTTTC-TGTTTTTATGCATGCA-TAAAGAACGTGCCCTCA-ATTTTA-CATAC-TTGTGTCGC-AC-TC-CTGACACNGTTAC-ATACAGCAATTGCGTGGA-AAGTTACG-C-GATG----TTA-TTGCGAGTA-GGAAATTAATA--TTACTATTACT-AAAAAACTCACGTATTAAAG--GAAAGACTTGATGTT--TCTTCAG-TTTTAGACTCAAGTTTTATCATTTTTCTAGTAAATATAAACNTGTCGTGTAATTAAGC-GATTGGGAAAATCATG--TCAAAAATAACCTCACACA-----TTTTTTTTTAACTGAAACGACATTCTGCTAGTAGTTTAGAATT--CGTATNC------------------A-AAC--A--A-AAA------AT----TAA-----A-AT---------C------TAAA---CTAAANAATTGTATTTAAAAA--GTGTTGCACT-CCTGAC-ATGGAAAAGATAGCCCTATGG---GC---AAAAT-----ACAAC-TTTTT-CTGTCATC-CT-TCTTT-C----GA----AA-TAATGTC-TTCTA---T-GCTG-CTC-TTTTG--AAAAATAAAG-AAAAGGATTA-TATT-GGTAAAGTTAATTTTT---AAT-GGTGCCAGTCAAAAGTC---GAAATGTTG-CACTCCTG----ACCATGAGGG--------GTA----------TGCTCATTAAG-----ATT--------GACTCCCTCAAAGTTTA----CATGGATGCCAGCCGGT-----TAC--TTTTTTCTTTTATTCAACAGAAG-AGATATTGCTTTAAAAGTTTAGATTTCTTTT--G-T-----AG-TTCAA--TTGATATTATTTAATTCTCAAGA-CAC---TTT-TTGCACAAATT---GGTCAT-------TCTT--T--GTG-TTG--CACT----CCT--GA-CATGG-TACTA-CA-TTTTTTTG--AGCTGA-GA-TTAAAGCC-A--TA-TCTT--AAG-CCTNAA-GT-GTTTC-A-TCATTCTTGGAA-T---TT-AAA-AGTA-TATA--GAT-TG-AAGATT---TTT--AAA--CAACAGT-TNTCTTTTAA-TATAG-ATCTTTTT--GTTTCGA-T---AGACAGG--AA-TTT-GAAAAAA--G---T-CAN-ATTTT-TT--AA-TGTCACAAAAAAGCGTTG-C--ACTCCTGAC-----ATTTTAGG--CGACGTTTT-AGGA-C-ACCAATCTATCA-TTCTT---TG---AG--A---TATCTCT-TA-GAT-TTTTGGAACACAC-ATAC-AC-AATATCAT-GAC-AC-AAGAT-A-TGG-----TA-TCCCTA-AAATCACCCAGACTGTTTGTAAAACATGT-AAA-TTGGTCAAATA------TGCC------TTGCCTCATTTTTTT--AAA-TCAC
Reference ( family-2058 ) : NAACTCTTGTCCACTTTCTGACAACATTACCACGTANAGCAGTGGAAAGNACACNAATAANACTTTTGGGGTATNGAAATCAAAGTGTTTGTTAGATAAAGTAATCAGAGCAGANAAACTGATGTTTCANCAATTTTGAGTTTGGTTGTAGAAATTTTNTATATTAGGAAAANTTTTAAATTACGCAAATTCCGAATTGTCAACAACTACTCTTAAGTAGTCGTTCTGGGTTTTCTTTTTTTAAATANAGTTGCATTAGTGGATAAGAAGTCACNTCCTATGGGCATTTTTTAAAAAATGCATTTGTTTTTTAATGTCAATGAAATATCTTAAACAAA-TATCTATA---AGCTTCAGACAT-----AGTGTGTCC-TA-TCGTTTC-TGTTTTTATGCATGCA-TAAAGAACGTGCCCTCA-ATTTTA-CATAC-TTGTGTCGC-AC-TC-CTGACACNGTTAC-ATACAGCAATTGCGTGGA-AAGTTACG-C-GATG----TTA-TTGCGAGTA-GGAAATTAATA--TTACTATTACT-AAAAAACTCACGTATTAAAG--GAAAGACTTGATGTT--TCTTCAG-TTTTAGACTCAAGTTTTATCATTTTTCTAGTAAATATAAACNTGTCGTGTAATTAAGC-GATTGGGAAAATCATG--TCAAAAATAACCTCACACA-----TTTTTTTTTAACTGAAACGACATTCTGCTAGTAGTTTAGAATT--CGTATNC------------------A-AAC--A--A-AAA------AT----TAA-----A-AT---------C------TAAA---CTAAANAATTGTATTTAAAAA--GTGTTGCACT-CCTGAC-ATGGAAAAGATAGCCCTATGG---GC---AAAAT-----ACAAC-TTTTT-CTGTCATC-CT-TCTTT-C----GA----AA-TAATGTC-TTCTA---T-GCTG-CTC-TTTTG--AAAAATAAAG-AAAAGGATTA-TATT-GGTAAAGTTAATTTTT---AAT-GGTGCCAGTCAAAAGTC---GAAATGTTG-CACTCCTG----ACCATGAGGG--------GTA----------TGCTCATTAA------ATT--------GACTCCCTCAAAGTTTA----CATGGATGCCAGCCGGT-----TAC--TTTTTTCTTTTATTCAACAGAAG-AGATATTGCTTTAAAAGTTTAGATTTCTTTT--G-T-----AG-TTCAA--TTGATATTATTTAATTCTCAAGA-CAC---TTT-TTGCACAAATT---GGTCAT-------TCTT--T--GTG-TTG--CACT----CCT--GA-CATGG-TACTA-CA-TTTTTTTG--AGCTGA-GA-TTAAAGCC-A--TA-TCTT--AAG-CCTNAA-GT-GTTTC-A-TCATTCTTGGAA-T---TT-AAA-AGTA-TATA--GAT-TG-AAGATT---TTT--AAA--CAACAGT-TTTCTTTTAA-TATAG-ATCTTTTT--GTTTCGA-T---AGACAGG--AA-TTT-GAAAAAA--G---T-CAN-ATTTT-TT--AA-TGTCACAAAAAAGCGTTG-C--ACTCCTGAC-----ATTTTAGG--CGACGTTTT-AGGA-C-ACCAATCTATCA-TTCTT---TG---AG--A---TATCTCT-TA-GAT-TTTTGGAACACAC-ATAC-AC-AATATCAT-GAC-AC-AAGAT-A-TGG-----TA-TCCCTA-AAATCACCCAGACTGTTTGTAAAACATGT-AAA-TTGGTCAAATA------TGCC------TTGCCTCATTTTTTT--AAA-TCAC
gi|1 : AAACAAACTATCTGTATTTAACTGCAAACATTATTCAG-GTGATC-TA-CCAATTC-TATATTTATGCATGCA-TAAAAAACGTG--GTCA-ATTTCATCA-AC-TTTTGTC-C-ACTTT-CTGACAATATTACTATGTAG-A---GCGTGGA-AAG-TACA-CAAATAAAACTT--TTG-GAGTATTGAAATCAA------AGTGTTTTT-AGAAAA-----GTAATCGAGCAGAAAAAC-TGATGTT--TCATCAA-TTTT
gi|1 : tatgAACTTTTGTCCACTTTCTGACAATATTACTATGTAGAGC-GTGGAAAGTACACAAATAAAACTTTTGGAGTATTGAAATCAAAGTGTTT-TTAGA-AAAGTAATC-GAGCAGAAAAACTGATGTTTCATCAATTTTGAGTTTGGTTGTAGAAATTTTGTATATTAGGAAAATTTTTAAATTACATAAATTCCGAATTGTCAACAACTACTCT--AGTAGTCGTTCTGGGTTTTCTTTTTTTAAATAAAGTTGCATTAGTGGATAAGAAGTCACATCC-ATGGGCATT------AAAATGCATTTGTTTTTTAATGTCAA-GAAATATCTTAAACAAA-TATCTATA---AGCTTCAGACAT-----AGTGTGTCCTTATTCGTTTCGTGTTTTTATGCATGCATTAAAGAACATATCCTCATGTTTTA-CATACGTTGTGTTGTGAC-TCACTGACACAGTTAC-ATACAGCAATTACA-GGATAAATTATGCC-GATG----TTAGTTGCAAATA-GGAAATTAATAATTTACTATTACTAAAAAAACTCACATATTAAAG--GAAAGACTTGATGTTGATCTCTAGTTTTTAGACTCAAGTTTTATCATTTTTCTAGTAAATATAAACATGTCGTGTAATTAAGCAGATGAGAAAAATCATGGATCAAAAATAACCTCACACATTTTTTTTTTTTTTTACTGAAACGACATTCTGCAAGTAATTTAGAATT--TGTATGCTATTGAATTAATTACCAGA-AAC--ATGATAAA------AT----TAATATTTA-ATGATAAAAAGT------TAAG---CTAAAGAATTGTATTTAAAAA--GTGTTGCACTGCCTGACGATAGAATAGATAGCTCTGTGGTAAGCTATAAAAT-----ACAACTTTTTT-CTA-CATCACT-TCTTTAC----AATGTTAA-T-GTGTCTTTCTA---TGGCTG-CTCGTTTTGACAAAAATAAAGAAAAAGGATTATTATTAGGTAAGGTTAAATTTTCGGAATAGGTGCCAGTCAAAAGTTCAAGGAATGTTGCCACTTCCGCTGAACCATGAGGG--------GAA----------TATTCATTAAGGCTTCATTAGCAGTTGGACTTCCTAAAGG--TA----CATGGATGCCAGCCAGT-----TACTTTTTTTTCTTTTATTCAAGAGAAGAAGATATGGC-TTAAAAGTTTAGTTCTCTTTT--GAT-----AGTTTCAAATTTTATATTATTT-ATTTTCAAGACCACTTTTTT-TTGCACAAATTG--GGTCAT-------TTTT--TGAGTG-TTG--CACTCA--CCTTGGA-CATGGTTACTA-CA--TTTTTTG--AGCTAA-GATTTAACACC-ATTTA-TCTTG-AAGCCCTAAA-GT-GTTTC-C-TCATTCTTTGAA-T---TTAAAA-AGTATTATA--GATGTG--AGATTTTCTTT--AAAACCAACAGTATATCTGTTAATTATAG-ATCTTTTT--GTTCCGATT---ATACAGG--AA-TTTGGAAAAAA--G---A-CAC-ATTTT-TT--AATTGTCACAAAAAAGCGTTG-C--ACTCCTGAC-----ATTTTAGG--AAACTTTTTCAGGACC-ACCAATCTATCATTTCTTTG-TG---AG--A---TATCTCTGTGCGAT-TTTTGGTACACACGATACAACAAATATCATGGACAACAAAGAT-ATTGG-----TATTCCCTA-AAATCATTCA-ACTGTTTGTAAAACATGA-AAT-TTGGTCAAATATTGCTTTGCCCTCATGTTGCCTCATTTTTTTTGAAA-CCACgagtttggttgtagaaattttgtatattaggaaaatttttaaattacataaattccgaattgtcaacaactactctagtagtcgttctgggttttctttttttaaataaagttgcattagtggataagaagtcacatccatgggcattaaaatgcatttgttttttaatgtcaagaaatatcttaaacaaatatctataagcttcagacatagtgtgtccttattcgtttcgtgtttttatgcatgcattaaagaacatatcctcatgttttacatacgttgtgttgtgactcactgacacagttacatacagcaattacaggataaattatgccgatgttagttgcaaataggaaattaataatttactattactaaaaaaactcacatattaaaggaaagacttgatgttgatctctagtttttagactcaagttttatcatttttctagtaaatataaacatgtcgtgtaattaagcagatgagaaaaatcatggatcaaaaataacctcacacatttttttttttttttactgaaacgacattctgcaagtaatttagaatttgtatgctattgaattaattaccagaaacatgataaaattaatatttaatgataaaaagttaagctaaagaattgtatttaaaaagtgttgcactgcctgacgatagaatagatagctctgtggtaagctataaaatacaacttttttctacatcacttctttacaatgttaatgtgtctttctatggctgctcgttttgacaaaaataaagaaaaaggattattattaggtaaggttaaattttcggaataggtgccagtcaaaagttcaaggaatgttgccacttccgctgaaccatgaggggaatattcattaaggcttcattagcagttggacttcctaaaggtacatggatgccagccagttacttttttttcttttattcaagagaagaagatatggcttaaaagtttagttctcttttgatagtttcaaattttatattatttattttcaagaccacttttttttgcacaaattgggtcattttttgagtgttgcactcaccttggacatggttactacattttttgagctaagatttaacaccatttatcttgaagccctaaagtgtttcctcattctttgaatttaaaaagtattatagatgtgagattttctttaaaaccaacagtatatctgttaattatagatctttttgttccgattatacaggaatttggaaaaaagacacattttttaattgtcacaaaaaagcgttgcactcctgacattttaggaaactttttcaggaccaccaatctatcatttctttgtgagatatctctgtgcgatttttggtacacacgatacaacaaatatcatggacaacaaagatattggtattccctaaaatcattcaactgtttgtaaaacatgaaatttggtcaaatattgctttgccctcatgttgcctcattttttttgaaaccaccc
gi|10 : tatgaaacaaactatctgtatttaactgcaaacattattcaggtgatctaccaattctatatttatgcatgcataaaaaacgtggtcaatttcatcCAT-------TCTT--T--GCG-TTG--CACT----CCT--GA-CATGG-TCTTC-CA-TTTTTTTG--AGCTGA-GA-CTAAAGCC-A--CA-TCTT--CAG-CCTAAA-GT-GTTTC-A-TCATTCTTGGAA-T---TT-AAA-AGCA-TAAA--GAC-TG-AAGATT---TAT--ATA--CAACAG--TATCTTTTcc
gi|11 : CTGAC-----AGTTTAGG--CAACATTTT-AGGA-C-ACCAATCTATCA-TTCTT---TG---AG--ATATTATCTCT-TA-GAT-TTTTGGAACACAT-ATA
gi|12 : aattttgagaacaaaatcacaagagtcccatttggcgccccgtaCCACAAAATTGA----TATGGTTACCAGCTGGT------AC--CCTTTTCTTT-----AACAGAAG-AGGTGTTGCTTTATAAGTTT---TTCCTTTTTCG-TACCGGAG-TTAAA--TTGATATTAT
gi|13 : ctTTTTAG--ATAA-ATATATTT--GTTTCAA-T---CGACAGG--AT-TAT-G-AAATA--G---T-CAT-ATTTT-TT---A-TGTAACAAAA------TG-A--ACTC--AAC------TTTGAGG--TAATGTT----GGA-A-ATTAAT
gi|14 : ATGTTG-CAGTCCTA----GTCATGAGGG--------GTACATGTACTAGTACTCATTAA------ATT--------GACTCCCACAAAGTATATAATTATGGATACCAG-CAGT-----TAT--TT
gi|15 : GTCAT-------TCTT--T--TTG-TTG--CACT----CCG--GA-CATTG-TACTA-CA-TTTTGTTG--AGCTGA-GA-TTAAAGCC-A--TA-TCTT--AAG-CCTAAA-GT-GTTTC-A-T
gi|16 : tgtatG-----TA-TCCCTA-AAATCACCAAGTCTGTTTGTAAAACGTGT-ACATTTGGTAAAATG------TGCC------TTGCCTCATTTTTTT--AAAGTCAC
gi|17 : -A-TAG-----TA-TCTTTTTAAATCACCCAGACTGTTTGT--------T-AAA------CAAATA------TGCC------TTGCCTCATCTTGTT--AAA-TCAcct
gi|2 : AACTCT-GTCTACTT-CTGACAACA--ACCACTTATAGCAGTGGAAAGGACATCAATAAT-TTTTTGGGGTATGGAAATCAA----TTTGTTAGATAAAATAATTAGAGCAGATAAACT----TTTCAACAATTTT-AGT------GTAAAAATTTTTTATATTAAGAAAAGT--------ATGCAAAT----AATTGTCAA-AA-TACTCTTAAGTAGTC-TTCTGAGTTTT----TTTTAAATACAGTTGCATTAGTGGATAA--AGTCACCTTCTATG--CATTTTTTAAAAAATGCATT-GTTTTTTAAT---AATGAAA--------ACAAC-TATCTATA---A-CTTCAGACAT-----A-TGTGTCC--A-TCATTTC-TGTTTTTATGCAT---------------CCCTCA-ATTTTA--ATAC-TTGTGTTGC-AC-TC-CTGACACCGTTAC-ATACAGCAATTGTATGGA-AA-TTATG-T-GA-G----TTA-TTGCGA-TA-GGAA--TA-TA--TTACTATTACT-AAAA--CTCACATATTAAAG--GAA---CTTG-------TCTTCAG-TTTTAGACTCAAGTTTTAT-ATTTTTCTA----ATAT---CTT----TGTAATTAAGC-AATTGGGAAAATCATA--TCAAAAATAACCTCACACA-----TTTCTTTTTAACTGAAACAA-AT-CTGCTAGTAGTTTAGAATT--CATATAC------------------A-AAC--A--A-AAA------AT----TAA-----A-AT---------C------TAAA---CTAAAGAATTGTATTTAAAAA--GTGTTGCACT-CCTGAC-ATGGAAAAGATAGCCCTATGG---GC---AATAT-----ACAAC-TTTTT-CTGTCATC-CT-TTTTA-C----AA----AAATAATG-C-TTCTAACTT-GC---CTC-TTTTG--AAAAATAAAG-AAAAGGATTA-TATT-GGTAAAGTTAATTTTT---AAT-GGTGCCAGTCAAAAGTC---AAAATGTTG-CACTCCTG----AACATGAGGG--------GTA----------TGCTCATTAA------ATT--------GACTCCTTAAAAGTTTA----CATGGATGCCAGC-AGT-----TAC--TTTTTTCTTTTATTTAACAGAAG-AGATATTGTTTTAAAAGTTTAGATTTCTTTT--G-T-----AG-TTCAA--TTGATATTATTTAATACTCAAGA-CAT---TTT-TTGCACAAATT---GGTCAT-------TCTG--T--ATG-TTG--CACT----CCT--GA-CATGG-TACTA-CA-TTTTTTTTTTAGCTGA-GA-TTAAAGCC-A--TA-TGTT--TAG-CCTCAA-GT-GTTTC-A-TCATTCTTTGAA-T---TT-AAA-AGTA-TATA--GAT-TG-AAGATT---TTT--TAG--CAACAGT-ATTTTTTAAA-TTGAG-ATATTATT--GTTTCGA-T---AGACAAG--AA-TTT-GAAAAAA--G---A-CAT-ATTTTTTT--AA-TGTCACAAAAAAGCGTTG-C--ACTCCTGAC-----ATTTTAGG--CAACGTTTT-AGGA-C-ACCAATCTATCA-ATCTT---TG---AG--A---TATCTCT-TG-GAG-TTTTGGAACACAC-ATAC-AC-AATATCAT-GAC-AC-AAGAT-A-TGG-----TA-TCCTTA-AAAGCACACAGACTGTTTGTAAAACATGT-AAA----ATAAAATA------TGCT------TCGCCTCA-TATTTT--AAA-CCAC
gi|3 : aATT--C-CATCT------------------A-AAC--A--A-GAG------ATGTGATAA-----ATAT---------C------TAAA---TTAATTAATTGTATTTAAAAA--GTATTGCACT-CCTGAC-ATAAAAAAGATAGCCCTTTGG---GC---AAAATTTTTTAC--T-TTTTT-CTGTCAAC-TT-TTTTT-CCTCAAA----AA-TAATGTC-TTCTA---T-GTTATCTG-TTTTG---AAAATGAAA-AAAAAGATTA-TATT-GGTAAAGTTAATTTTG---AAT-GGTGTCTGCCAAAAGTC---AAAATGTTG-ACCTCCTG----ACTATGAAAG--------GTA----------TGCTCATTAA------ATT--------GGCTACCTCAAAGTTTA----CATGGAGGCCAGCAGGTAAATATAC--TTTTTCCTTTTCTTGAACAGA---AGAT-----------AGTTTAGATTTCTTTT--G-T-----AG---------------TATTTAATTTTCAAAA-CAC---TTT-T-----AAA--------CA----------CT--T--GTA-TTG--CACT----CCT--GA-CATAG----TA-CA-TTTGTTTG----------------AGCC-A--TA-TCTT--AAG-CCCCAA-GT-GTTTC-A-TCATTCTTGGAA-T---TC-AAA-AGTA-TATA--AAT-TG-AAGATA---TTT--AAA--CAACAGT-TTTCTTTTAA-TATAG-ATCTTTTTTGGTTTTAA-T---AGACAGA--GA-TTT-GAAAAAA--G---T-TAC-ATTTC-TT---A-T----------AGTGTTT-T--ACTCTTGAC-----ATTTTAAG--CGACGTTTT-AGGC-C-ACTA--CT-TCA-ATGTG---TATATAC--A---TGTATC--TA-GATGTTTTGGAACACAT-ATAC-AC-AATATCAT-GAC-TC-AACAT-A-T-G-----T--TTCCTA-AAATCCCTCAGTATGTTTGTAAGACATGTAAAA-TTGGTCAAATA------TATT------TTGCCTCA
gi|4 : TTTC--G-C-----AG-TTAAA--TTGATTATATTTAATTCTCAGGA-CAC---TTT-T-ACACTACTT----------------TATT--T--GAG-TT-------------T---A-CATGG-TACCA-CAATTTTTTTT--ATCTGC-GA-TTAAAGCC-A--AG-TCTT--AAT-CTTCAA-TT-TTTTC-A-CCAATGTTGGAA-T---TA-AAA-AATA-TATA--GAT-TG-ACCATT---TTT--AAA--CAACCAT-TTTCTTTTAA-TATGG-ATCATTTT--CTTTTGA-T---TGACAGG--AC-TTT-GAAAAAA--G---T-AAA-AATTT------A-TGTCACAAAAATATATTG-C--ACTTCTGAT-----ATTTTTAG--CGACGTTTT-AGAA-C-ACCAATTCATCA-TTTTCGTATA---AGATA---TATATGT-TA-G-T-TATTGAAATACAC-ATAC-AC-AATATCAT-GAC-AT-AACAT-A-TGG-----TA-TACCTG-CAATCACCCATACTGTTTGTAAAAGATGT-AAAGTTGGTCAAATA------CGCA------TTGCCTTGCTTCTTG--AAA-TCAC
gi|5 : CTCCTG----GCCATGAGGG--------GTA----------TGCTCATTAAGATAA-ATT--------GACTTCCTCAAAGTTTA----CATGGATGCCAGCCAGT-----TAC--TTTTTTCTTTTATTCAACAGAAG-AGATACTGCTTTAAAAGTTTAGATTTCTTTT--G-T-----AG-TTCAA--TTGATATAATTTATTTCTCAAGA-CAC---TTTATTGCACAAATT---GGTCAT-------TTTT--G--GTG-TTG--CACT----CCT--GA-CATGG-TACTA-CA-TTTTTTTG--AGCTGA-GA-TTAAAGCC-A--TA-TCTTA-AAG-CCTAAAGGTGGTTTCAA-AGATTCTTTGAA-T---TT-AAAGAGTA-TA-AGTGAT-TGAAAGATT---TTTTAAAA--CAATAG--TATCTTTTAA-TATAG-ATCTTTTT--GTTTTGA-T---AGACAGG--AGTTTT-GAAAAAA--GC--T-CAA-ATTTT-TTAAAA-TGTCACAAAAAAGCGTTG-C--ACTCCTGAc
gi|6 : TGTAATTAAGC-GATTGGGGAAATCATG--TCAAAAATAACCTGTCACA-----TGTTTTGTTAG-TGAAAC-ACA-TCTGCTAGTAGTTTGAAATTAAAATATTA------------------ATAATTGA--A-AAAAATAATAT----TAA-----A-AT---------TCAGTGATAAAAATCTAAACTATTGAA---AAAAAATGTATTGCACT-CCTTTC-CTGGAAAACACAGTCCTAT-G---GC---AAAAT-----AGAAC-CTTTTGTTGTCATC-CTCTCTTT-T----GA----AA--AAT------------------------------AAA------G-AAAAGGATTA-TATT-AGTAAACTTAATTTTT---AAT-GGTGCCAGTCAAAAGTC---GAAATGTTG-CACTCCTG----ACCATGACGGTTACAATTGTA----------TG-TCATT
gi|7 : catttcttACAAATTTGGGGTCATGGCCGGGTCTTGGT--GTGATTGGGCACCGGGCCTT--GATCATGG-TACTAGCA------------GGTGAAGG-GTAAAGCCCA--TGGTCTTTGGAG-CTTCAC-GT-GTGGC-AATCATTCTTGGAAATGGGTT-AGG-AGGA----G--GAT-TG-GCGGTG---T----AAATGCAACATT-TCCCTTTTAA-TATAGGATCTT-----GTTTTGA-TGGGAGACAGGGAAA-TGG-GCAAGAA--GAGGTGCAGTAGTTT-TA--GG-TGTCTCAAAAAAGTGTTGGCGGACTCCTGAC-----ATTTTAGGAGCGATGTTTT-AGGA-C-ACCGAT
gi|8 : -TG-AAGATT---TTT--AAG--CAACAGT-ACTTTTTCAA-TATAG-ATCATTTT--GTTTTGG-T---AGACAGG--AA-TTT-AAAAAAAATG---T-CAA-ATCTT-TTA-AA-TGTCACAAAAAAGTGTTA-C--ACTCCTCAC-----ATTTTATA--CAACGTTTT-TGG--C-ACCAATTTATCA-TACCT---TG---AG--A---AATCTCG-TA-GAT-TTTTGGAACAAAC-ATAG-AA-AATATCGT-G
gi|9 : TTG-T--ATTCCCGACTCTTTCTTTTGG-----ACGCTTT-AAGA-CTA--AATTCATCA-TTTTG---TG---AG--G---TATATCT-TA-GAT-TTT-GGAACATAC-ATCC-A----TACCA----C-AC-CAGATTA-GGGGCATATA-TCCATA-AAATCACCCAGACCGTTTGTAAAGC