lowQualScore : 2222222222222222222222222222222222222222222222222222222222222222222222222 222222222222222222222222222222222222222222222222222222222222222222222222222222222222
lowQualScore : 2 3 22 2222222222222 1111111 1 55555555555555555555555555 1111 111111 11111 333 1111 222 111 1111 33333 111111 22222 2222222222222222 11 22 111 222222 4444444444444444444444444444444444444 1 2 33333333 33 111111 11 11111 22222222 99999999999999999999999999999999999999999999999999999999999999999999999999999999999999 55555555555555555555 111 1 11 1 333333333333333333 222 111 111 0000000000000000000000000000000000000000000000000000000000000000000000000 11 22222 11 555555555555 22 44444444 666666666666 11111 22 555555 33 11 11111 333333 44 55555555 2 444444444444444444444444444444444444444444444444444444444444444444444444444444444444 111 222 555555555 44444 22 111111 4444444444 22222
lowQualScore : 0 2 8 44 7 777 8888 55 9999999999999 4 5555555 4 55 2 8 33333333333333333333333333 5555 888888 11111 888 5 5 111 4 2222 2 4 4 777 77 333 44 8 1 4 3333 55555 000000 66 88888 1 5 8888888888888888 66 4 4 00 1 2 77 222 222222 5 5 66 5 3333333333333333333333333333333333333 5 1 0 1 5 5 5 5 3 5 88 0 1 77777777 77 4 55 3 22 55 8 000000 66 00 555 4 00000 5 5 8888 00000000 11111111111111111111111111111111111111111111111111111111111111111111111111111111111111 8 6 5 44444444444444444444 0 1 444 0 2 11 0 444444444444444444 8 3 222 8 777 666 3 2222222222222222222222222222222222222222222222222222222222222222222222222 1 77 33 88 5 11111 11 66 000000000000 22 00000000 999999999999 55555 88 5 777777 1 3 3 3 3 55 9 88 3 00 2 11111 55 999999 555 9999 111111 5 0 4 4 55 0 8 4 77777777 5 66 777777777777777777777777777777777777777777777777777777777777777777777777777777777777 2 8 66 2 2 2 444 444 555 222 5 2 2 6 333333333 00000 66 8 777 44 888888 5 66 555 4 4 7 3 55 666 4 7777777777 2 2 2 55 88888 2 2 444 2 2 2
lowQualScore : . . . .. . ... .... .. ............. . ....... . .. . . .......................... .... ...... ..... ... . . ... . .... . . . ... .. ... .. . . . .... ..... ...... .. ..... . . ................ .. . . .. . . .. ... ...... . . .. . ..................................... . . . . . . . . . . .. . . ........ .. . .. . .. .. . ...... .. .. ... . ..... . . .... ........ ...................................................................................... . . . .................... . . ... . . .. . .................. . . ... . ... ... . ......................................................................... . .. .. .. . ..... .. .. ............ .. ........ ............ ..... .. . ...... . . . . . .. . .. . .. . ..... .. ...... ... .... ...... . . . . .. . . . ........ . .. .................................................................................... . . .. . . . ... ... ... ... . . . . ......... ..... .. . ... .. ...... . .. ... . . . . .. ... . .......... . . . .. ..... . . ... . . .
lowQualScore : 8 3 6 66 3 888 1111 33 3333333333333 0 9999999 0 55 0 7 22222222222222222222222222 1111 888888 11111 888 0 0 000 4 0000 7 4 4 333 33 999 66 9 1 4 9999 00000 333333 11 99999 9 7 3333333333333333 11 4 4 11 9 2 66 999 999999 0 0 99 0 6666666666666666666666666666666666666 0 4 1 4 0 0 0 0 7 7 77 3 9 11111111 44 0 55 3 66 55 1 333333 11 66 777 4 99999 0 0 4444 88888888 55555555555555555555555555555555555555555555555555555555555555555555555555555555555555 8 0 2 44444444444444444444 8 0 000 0 5 88 0 000000000000000000 0 2 000 0 222 444 2 1111111111111111111111111111111111111111111111111111111111111111111111111 0 99 11 22 0 66666 99 99 444444444444 00 99999999 000000000000 99999 00 0 444444 2 6 6 6 6 55 9 77 6 55 3 22222 55 777777 999 0000 999999 0 1 4 4 88 1 9 4 22222222 6 99 777777777777777777777777777777777777777777777777777777777777777777777777777777777777 7 0 33 7 7 4 111 777 000 111 7 9 9 7 555555555 88888 11 9 888 88 000000 0 99 333 0 0 3 6 66 444 8 5555555555 9 9 5 99 11111 7 5 444 5 9 9
consensus : TGCTCTCCACACTA-TGCCGAATATCCTTG-C-GA--NTGACATAA-GA-A-----TGT---CATTCGC-CGCTCATTTC-G--CA-ATGAT--TC-----------GT----TAG-TAT--C-GCTA-A----CAT-----TCGTAC---TC-A-CTCTC-AA-G---TAAT-C-GT---GC-CGT---TCGT-GAGT-T----TTAAC----GA---A--TA--TTAG----AAACATGCT-CC---T-A--TA---T--T-C-GC-AAGGAATTT-GAAATTTCTCAA--T-CCAATCGTA-A-ATA--A-TT-CAT-ATGCA--TTNTTTAAGCCAAT-C-GTA-C--G-ATGGCAAGC-CA-TTTGCATTGA-TCG-TAATACA-TTCC-TTTTATAACTCGTCAC--A-CTC-GCAA-AC-ACTCGTAAG--GATT-CGT-GAAAGG--TTTGGGCAAA---T--TTTGAC--GTC--GA-T-TTT-TTTTCA-CGA-TT-GTC--C-ACGG-----AT-TTCA------AT-CA---------CCGGAA--------TT------TATTATTTCCG-CTT-GGG-TTT-T-TGCTTTT-CT-G-T----TGGNTTTTATTGCT-TT-------NTTGTTCNTGTTTTTTTTTT---CATTT-GGTCATCTTT-G-------TAGGACTACATGTAATT-CTGT-CCGAT-TTC-CCTCTGCCCC-GACCCCTTC----C----CAAGCTTTNTTCCCACCTCTCG--AT-CA-GT---C---AG-T-GA------------------AAAACT--AAATT-AAAA-ACGA-A----GGTATT--C--GAAAA--G--AN--TTGTT-AAAAAAT-C----G-CAACGCATGCGCT-T--TTTAT--T--CGTTTTAATTCTAACTG-ATA----CTCGCA-AGAA-TTCG-T-TA-GACTCGCAAC-GATTA-TCG-CAAGCATTCG--T-AA--G---G--TCGTA--AAGGC-ATTTGTAATC--AT-TCAGAAATTAATTG-T-AAGAAA--TTCTT-T-ATA-T------TTATCGCAAAAAA--ATCA-----------ATCATA-----------A--------------------A---ATT--C-----------------A----AGTC-GC-AAA--C-A-CTCGT-AAAGAT---TC--GTAAG---AC-CAG-TTG-T-AA-ACGA-TCT-TAA-GCCTTGATG---GA--T-TTTCAATA---TTTTAAAACCCC-A---ATC-TTATTA--TT-T-CT-G-ACGAA-TTTTCT-G-CGAACG-GCCAA-----A----T-T-T-T--CAT-----TCGCA-AG-G---ATATTCGGC-ATAGT-GT-GAGAGCA
Reference ( gi|2 ) : TGCTCTCCACACTAGTGCTGAATATCCTT--C-GA--TTGACATAA-GA-A-----TGC---CATTCGC-CGCTCATTTC-G--CA-ACGAT--TC-----------GT----TAGCTAT--C-GCTA-A----CAT-----TCGTAC---TC-A-CTC-C-AA-G---CAAT-C-GT--CGC-CGT---TCAT-GAGT-T----TTAA-----GA---A--TA--TTA-----AAACATGCTGCC---T-A--TA---T--T-C-GCAAAGGAATTTTGAAATTTCTCAA--T-C-AATCGTA-A-ATA--A-T--CATTATGCA--TTCTTTAAGCCAAT-C-GTA-T--G-ATGGCAAGC-CA-TTTGCATTGA-TCG-TAATACA-TTCC-TTTTATTACTCGTCAC--A-CT--GCAA-AC-ACTCGTAAG--GATT-CGTTGAAAGG--TTTGGGCAAA---T--TTTGAC--GTC--AA-T-TTT-TTTCCA-CGA-TT-GTC--C-ACGG-----AT-TTCA------AT-CA---------TCGGAA--------TT------TATTATTTCCG-CTT-GGGTTTT-T-TGCTTTT-CT-G-T----TGGTTTTTGTTGTTGTT-------TTTGTTGTTGTTTTTTTTTT---CATTT-GGTCATCTTT-G-------TAGGAATAAA-GTAATT-CTGT-C-GAT-TTC-C-TCTGCCTT-GACCCCTTC--GGCT--TCAAGCTTTTTTCCCACCTCTC------CA-G----C---AG-T-GA------------------AAAACT--AAATT-AAAA-ACGA-A----TGTATT--C--GATA---G--AT--TTGTTTAAAAAATAC----G-CAACG-ATTTGCTGT--TTTAT--T--CGTTTTAATTCTAACTG-ATAGTC-CTCGCA-AGAA-TTCG-T-TA-AACTTGCGACTGATTA-TCA-CAAGCATTCA--T-AA--G---G--TCGTA--AAGGT-ATTTGTAATC--AT-TCAGAAATTAATTG-T-AAGAAAGTTTCTT-T-ATAGT------TTATTGCATAAAA--A--------------A----A-----------A--------------------A---ATC--C-----------------A----AGTC-GC-AAA--C-A-CTCGT-AAAGAT---TG--GTAAG---AC-CAG-TTG-T-AA-ACGAGTCT-TTATGCCTTGATGG--GA--T-TTTCAATA---TTTAGAAACCCCCA---ATC-TTGTTA--TT-T-CT-G-ACGAA-TTTTCT-G-TGAACG-GCCAA-----A----T-T-T-T--CAT-----TCGCA-AG-G---ATATTCGGC-ATAGT-GT-GAGAGCA
gi|10 : TGCTCTC-ACACTA-TGCCGAATATCCTTG-C-GA--TTGACATAA-GA-A-----TGT---CATTCGC-CGCTCA-TTC-G--CA-ATGA---TC-----------GTA---TAGCTAT--C-GCTAGA----CAT-----TCGTAC---TC-A-CTCTC-AA-G---TAAT-C-GT--CGC-CGT---TCGT-GTGT-T----TTAAC----GA---A--TA--TTAG----AAACATGCT-CC---TAA--TA---T--T-C-GC-AAGGAA--TTGAAA-TTCTCAA--TCC-AATCGTA-A-ATA--ATT--CA-TATGCA--TTC-TTAAGCCAAT-C-GTATT--G-ATGGCAAGC-CA-TTTGCATTGA-TCG-TAATACA-TTCT-TTTTA-TACTCGTCACA-A-CTC-GCAA-AC-ACTCGTAAG--GATT-CAC--GAAGG--TTTGGACAAA---T--TTTGAC--GTC--AA-T-TTT-
gi|5 : tacTGCTCTC-ACACTA-TGCCCAATATCCTG--C-GA--TTGACGAAA-GATC-----TGT---CATTCCG-CGTTT-CCTC-GACTA-ATGAT---C-----------GT-----AAATATA-C-GCTT-A----GATATGGCTTGTAC---TCTA-CTA-TGAA-G---TAAT-C-GT---GC-CGT---T-GT-GAGT-TATTATTAAC----GA---A--TA--TTAG----AAACATGCT-CC---T-A--AAA--T--T-C-GCAA-GGAATT--GAAATG-CTCAA--T-CCAATCGTA-A-ATA--A-TT-CATTATGCA--TT-TTTAAGCCAAT-CCGTA-TT-G-ATG-CAAGC--A-TTTGCATTGG-TCG-TAATA-A-TTCA-TAT-ATAGTTCGTCAC--A-ATTCGCAA-AC-ATTCGTAAG--GATT-CGT--AAAGG--TT--GGCAAT---T--TTTGAT--GTC--AA-A-TTT-TTTCAGTCGG-T--GTC--C-ACGG-----CT-TTCA------AT-CA---------CCAGAA--------T----------------CA-C----GGAATT-T-TATTATT-CTCGCT----TGGCTTTTATTGCT-TT-------ACTGTTCATGTTTTTTTTTT---C
gi|11 : atacTACTGTCCACACTA-TGCCGAATATCCTT--CCGA--T-GACATAG-AAGA-----TGT---CATTCGA-CGCTCATT-C-G--CA-ATGA----C-----------GTA---TAAATAT--C-GCTA-A----CAT-----TCGTAC---TC-A-CTCTC-AA-G---TAGTTC-GT--TGC--GT---TCGTTGATC-T----TTAA-----CACTGA--TA--GTA-----AA-TAT-CTCCA---C-G--TA---T--T-C-G---AGGAATT--GGAATTGCTCAA--T---AATCGTA-A-ATA--A-TT-CAT-ATGCA--TTATT-------AT-C-GTA-CA-G-ATGGC--GC-CA-TTTGCAC--A-TCG-TAATA-A-TTCC-TTTTATAACTCGTCAC--AACTC-GCAA--C-GCTC-TAGG--AATT--GTGAAAAGG--TTTGGGCAAA---T--TTTGAC--GTCG-AA-T-TAT-TT--CA-CGATTT-GTC--C-ttctt
gi|12 : aTACTGTCCACACTA-TGCCGAATATCCTT--CCGA--T-GACATAAAGA-A-----TATT--CATTCGC-CGCTCATT-C-G--CACATGA----C-----------GTA---TAAATAT----GCTAGA----CAT-----TCGTAC---TC-A-CTCTC-AATG---TA-T-C-GT---GC--GT---TCGT-GATC-T----TTAA-----CA------TA--TAG-----AATTAT-CT-CCACGT-A---A---T--T-C-G--AAGGAATT--GGAAATTCTCAA--T-C-AAT-GTA-A-ATA--A-TT-CAT-ATGCA--TTATT-------AT-C-GTA-CAGG-ATGGCAG---CA-TT-GCACTGA-TCG-TAATACAATTCCATTTTAT-ACTCG-CAC--A-CTC-GCAA-AC-GCTC-TA-G--GATT-CGTGAAAAGG--TT-GGGCAAA---T--TTTGAC--GTC--GA-TATTA-TTTCAA-C-A-TT-GTC--C-
gi|17 : aTGCTTTC-ACACTA-TGCCGAATATCCTT--
gi|19 : caagaattcgttagacttgaaacaattaccgcaatcattcgtaagggtcgtaaaggcatttgtatcagtcagaaattaattgtaagacatttttatatctattgcaaaaaaaatcataaggttcgtatggaattcattaaagtcgcaaaacactcgtaaagattcgtaagacaattgtaaacgatcataagcTGCTCTC-ACACTA-TGCCTAATATCCTTG-T-GA--TTGACATAA-GA-A-----TGT---CATTTCC-CGTTCA-GTC-G--CA-ATGAT--CT-----------TA----TAGGTAT--T-GCTA-GT---TAT-----TCGTAC---TC-A-ATCTT-AA-G---TAAT-C-GT---GCTCGT---TTGT-GAGT-T----TTAAC----GA---A--TA--CTAG----AAACATGC
gi|23 : tacTGCTCTC-ACACTA-TGCCGAATATCCTTG-C-GA--ATGA
gi|28 : aaagattcgtaagacagttgtaaacgatcgtaagcatggctgattttcaatattttctgcgaacgtcaaaactttTGCTCTC-ACACTA-TGCCGAATATCgc
gi|16 : GCTCTC-ACACT-GTGCCGAATATCCTTG-C-GA--ATG----AA-AA-A-----TGTTAGCGTTCGC-gcatagg
gi|1 : atcattcgcaagttaattgtaagaaattcttgtatattattgcaaaaaaatcataaggttcgtatggaattcattaaactcgcaaaccactcgtaaagattcgtaagacaatcgtaaacgatcttaagccttggtgatttttgatattttaaacacccaatcttattatttctgacaaattttctCTCTACACACTAG-GCCGCATA--CTG--C-GAATTTGAGA-AA-GATC-----TGT---CATTCGC-GG----TTTCTG--CT-ATGATC-TCAAATACTGGATGT----TAG-TA-----GGTG-G----C-T-----TCGTACCTCTC-A-CTAGT-AA-G---TAAT-CCGTGGCGT-TGTGG-TTAT-TA-T-T----ATAACG---AA---A--TA--TTAG----AAACATGCT-CC---T-A--CA---T--TGC-GCTAAGGAAATTGCAAAATGCTCAAATC-C-AATCGTATATATA--A-TTTCATTATGCAA-TTTTTTAAGCCAATGC-GTA-TT-G-ATGGCAAGAGCA-TTTGCATTGGGTCGGTAATA-A-TTA--TTATATAGTTCGTCACGAA-CTC-GCAA--C-ATTCGTAAG--GATTGCG-TGAAAGG--TT--GGCAAATTGT--TTTGAT--GTC--AA-A-TTT-TT-----CG--TC-GTC--CGACGG-----GC-TTTA------AT-CA---------CCAGAATCCGGAATTT------TATTATTT-CG-CTTCGGGCTTTAT-TGCTTTGACT-G-TTTCATGGTTTTTATTATTCTTCTTTATCTTTATTTTTTTTTTTTTTTTTTACATTTGGGTCA--ATT-G-------TAG--ATGAG--------CT-C-C-GAT-TTC-T-CCT-C-----ACC--------------CAAGTTTTTCGCTCACGT---------CA-G----CATAAG-T-G--------------------TTGTT--CAATT--AAC-ATGA-A-----GTTGT--C--GAAA---G--A-----ATTTTAAAAATGT------CGACG-CTAGCCTCC--TTTATA-TGGCGTTT---TTCTAATTG-A---TCACTCG-A-AGAA-TTCG-T-TA-GAC-TGCAAC--AATC-TCG-C-AGCATTCG--TGAA--G---G--TCGTG--AA-GC-ATGTGTA--T--AT-TCACAAATTAATTG-T-AAGTTAATCT-TT-T-ATA-T------TTATCGCA-AAAA--ATCATAAGGTTCGTGA----G-----------G--------------------A---ATT--CTTA--------------A----AGTC-GCAAAA--C-A-CTCGT-AAAGAT---TC--GTAAG---A--CAGCTTG-T--A-ACGA-TCGATTA---CTTGAT----GA--TCTTTCAATA---TTTTAAAA--CTCA---ATT-CTATTA--TT-TGC----ACGAA-TTTCGT-G-CGAA-A-GCCAA-----AAGG-T-T-T-T--TATCA---TAG-A-AG-GAAAATATTCGACTATAGT-GT-GA
gi|20 : CTCTC-ACACTA-TGCCGAATATCCTTG-C-GA--ATG----AA-AA-A-----T-------TTTGG-CG-----TTC-G--CAGAAAAT--TC-----------GT----CAGa
gi|24 : gtaaagattcgtaagacagttgtaaacgatcttaagccttgatgattatcaatattttaaaaccacaatcttattatttCTCTCCACACTA-TGC-GAATATCCTCTGC-GA--ATGAg
gi|9 : ttctgacaaaattttctacgaaagccaaaattttCACACTA-TGTCGAATATCCTTG-C-GA--ATG--ATAA--A-ACCTTTTGG---CGTTCGC-C
gi|6 : aattcaaaaacgaaaggttgattcgacaaagaattgttaaaaatcgtcgacgctatgctctttagcgtttttattctaattgatactcgcaagattcgttagatctgcaacaatcatcgcaagcattcgtgggtcgtgaagcatgtgtatattcagaaattaatttaagaaattctttatattatcgcaaaaaaatcataagttcgtatggaattcattaaagtcgcaaaacactcgtaaagattcgtaagacagcttgtaaacgatcttaccttgatgattttcaatattttaaaaccaatttattattctgccgaattttctTCCGCACGCTCACT-C-G--CAGATGATGGTT-----------ATGGCATAGCTATACC-GCTT-AGACTCAT-----TCGTAC---TC-ATCTCTC-AA-GTATTAGT-C-GT--GGC-CGT---TCGTCGAGT-T----TAAAGGGCGGA---A--TA--TTAGATCTAGACATGC-GCC---T-AATTA---T--T-TAGCCAAGGACATTTGCA--TTCTCAT--T-CAAATCTCG-A-ATAATA-T--CATATTGCATGTCCTCTAATTCA------------G-AT------C-CATTTTGCTTTGA-TCG----TATG-TTTC-TTTag
gi|3 : TTC-G--CA-ACGAT--T-----------------------AT--C-GCAA-G----CAT-----TCGTAatctacccaatatgataagataactttgtatttatatgtggctgacgatctttttcgtaatgattgtgaattttttacgttcaaattttttttcacgatttgtcgctacgatttttatattcactggatatgcatcggaattggggggtatcatttccgtcttgggtttttatgcttttctgttgccc
gi|9 : agtaatcgtggtcgttggtgagttttaacgaatattaaaaatatgctcataaaattcgcgagaaattgaaatgttcaatccaattgtaaataattcatattgatggcaagccatttgcattgatttcaatacattccttatatactcgaacacactcgtaagaagagtgaaagttggggcaaatgttttgacatgtcaaattttttttcacgattgtccacggatttcaatcaccggaatcatcggaatttattatttctgctttggattttattgcttttctgttcatattttcatttggtcatctttggtaggactacatgtaattctgtccgatctccctctgtccggaccccttccagcgttgttcccacctcacggtatgagttgtcagttcaaaaactaaattcaaaatgaaggtattcgaaaataattgtttaaaaaatcccaacgcatgcgcttttatttgttttattctaactgacactcgtaaggattcgttagaTC-G--CA-A-GAT--TC-----------GT----TAG--AT--CTGC-A-A----CA----------A----TC-A-TCG-C-AA-G---CATT-C-GTG-GGT-CGTGAAGCAT-GTGTATA---TTCA-----GA---AATTAATTTA-----AGAAATTCT--T---T-A--TA---TTAT-C-GCAAAAAAATtattattgccccccaaaaaatcataaggttcgtatggaattcgttaaactcgcaaataactcgtaaagattcataagacagttgtaaa
gi|3 : aattcaaaaacgaaaggttgattcgacaaagaattgttaaaaatcgtcgacgctatgctctttagcgtttttattctaattgatacA-G---TAAT-C-GT--GGT-CGT---TGGT-GAGT-T----TTAAC----GA---A--TA--TTA-----AAA-ATA-TGCT---C-A--TAAAAT--T-C-GCGA-GAAATT--GAAATGT-TCAA--T-CCAATTGTA-A-ATA--A-T--------------------------T-C-ATA-TT-G-ATGGCAAGC-CA-TTTGCATTGA-TTT-CAATACA-TTCC-TTATAT-ACTCG--------------AACAC-ACTCGTAAGAAGA----GT-GAAAG---TTGGGGCAAA---TGTTTTGACATGTC--AAAT-TTT-TTTTCA-CGA-TT-GTC--C-ACGG-----AT-TTCA------AT-CACCGGAATCATCGGAA--------TT------TATTATTTCTG-CTT-----------------------------TGGATTTTATTGCT-TT-------TCTGTTCATATTTT---------CATTT-GGTCATCTTTGG-------TAGGACTACATGTAATT-CTGTCC-GATCTCC-C-TCTGTCCG-GACCCCTTC----C------AGCGTTGTTCCCACCTCACGGTAT-GA-GTTGTC---AGTT-CA------------------AAAACT--AAATT-CAAA-ATGA-A----GGTATT--C--GA-A---A--ATAATTGTTTAAAAAAT-C----C-CAACGCATGCGC--T--TTTAT--T--TGTTTT-ATTCTAACTG-ACA----CTCGTA-AGGA-TTCG-T-TA-GATTCGCAAC-GATTA-TCG-CAAGCATTCG--T-Acataagttcgtatggaattcattaaagtcgcaaaacactcgtaaagattcgtaagacagcttgtaaacgatcttaccttgatgattttcaatattttaaaaccaatttattattctgccgaattttctggcgaacgccaaaaggttttatcattcgcaaggatattcgacatagtgtgag
gi|4 : ---T--T-C-GCAAAG-AATTT--AAATT-CTCAA--C-CCAATCCTA-A-ATG--A-TT-CAT-ATGCA--TTGTT-AAGGCAAT-T-GTA-T--GGATGATAAAC-CA-TGTGCATTGA-TGG-TAATtattattgccccccaaaaaatcataaggttcgtatggaattcgttaaactcgcaaataactcgtaaagattcataagacagttgtaaa
gi|16 : aaacATTCATTAA--A-CTC-GCAA-ACCACTCGTAAA--GATT-CGTgataattcgcaaggttgttttatggtgatgttttttggtgttgatggagagtgtggcggtatagcaattggtgtgatataattgttagatatattattggaaccatcgaaagtattattccgcttgggttttattgatattatgttcattttattttggtcatctttggtacatgcagggctacatgtaattctgtccggtttccctctgcctcgaactattccagatttgtttcctcccttcggtatgatcttttagttcaaaaactaaattcaaaatgaaggtattcgagaagaattcttaagacattgcaatgcatatgcttttattcgttttattctgacaaaaattcgttagacttgcaacgattatcgcaagcattcttaaagatcgtaaaagcacttgtttattgtaagaaattcttgtata
gi|9 : atcattcgcaagttaattgtaagaaattcttgtatattattgcaaaaaaatcataaggttcgtatggaGTCGC--A-------AA-AC-ACTCGTAAA--GATT-CGTAAGACAG--CTT--GTAAA----------------C--GA-T-CTTACCTTGA-TGA-TT-TTC--A-AT-------AT-TTTA------A--AA---------CC--AA--------TT------TATTA-TTCTG-C-C-GAATTTT-C-TGaagacaatcgtaaacgatcttaagccttggtgatttttgatattttaaacacccaatcttattatttctgacaaattttctgcgaacgctaacatttttcattcgcaaggatattcggcacagtgtgagagc
gi|17 : aattcaaaaacgaaaggttgattcgacaaagaattgttaaaaatcgtcgacgctatgctctttagcgtttttattctaattgatactcgcaagattcgttagatctgcaacaatcatcgcaagcattcgtgggtcgtgaagcatgtgtatattcagaaattaatttaagaaattctttatattatcgcaaaaaaatcataagttcgtatggaattcattaaaGTCGC--A-------AA-AC-ACTCGTAAA--GATT-CGTgcgaacgccaaaaggttttatcattcgcaaggatattcgacatagtgtgag
gi|17 : caagaattcgttagacttgaaacaattaccgcaatcattcgtaagggtcgtaaaggcatttgtatcagtcagaaattaattgtaagacatttttatatctattgcaaaaaaaatcataaggttcgtatggaattcattaaa--A-CC--GCAA-TC-ATTCGTAAG--GG-T-CGT--AAAGGCATTTGaagacaattgtaaacgatcataagcaaggatattcggcatagtgtgaaagca
gi|6 : caagaattcgttagacttgaaacaattTT-CGT---AATG--ATTGTG-AAT---T--TTTTAC--GTTCAAA-T-TTT-TTTTCA-CGA-TTTGTCGCT-ACGATTTTTATATTCACTGGATATGCA---------TCGGAA--------TTGGGGGGTATCATTTCCGTCTT-GGGTTTT-TATGCTTTT-CT-G-T----TGtatcagtcagaaattaattgtaagacatttttatatctattgcaaaaaaaatcataaggttcgtatggaattcattaaagtcgcaaaacactcgtaaagattcgtaagacaattgtaaacgatcataagcaaggatattcggcatagtgtgaaagca
gi|26 : tccgcacgctcactcgcagatgatggttatggcatagctataccgcttagactcattcgtactcatctctcaagtattagtcgtggccgttcgtcgagtttaaagggcggaatattagatctagacatgcgcctaattatttagccaaggacatttgcattctcattcaaatctcgaataatatcatattgcatgtcctctaattcagatccattttgctttgatcgtatgtttctttatctacccaatatgataagataactttgtatttatatgtggctgacgatctttT-CGT-GAAAGG--TTTGGGCAAA---T--TTTGAC--GTC--GA-T-TTA-TTTTCA-CGA-TT-GTC--ccc
gi|4 : A------AC-CA---------TCGAAA--------GT-------ATTATT-CCG-CTT-GGG-----------------------------TTTTATTGATATT-------AT-------GTTCATTTTAT-----TTT-GGTCATCTTT-GGTACATGCAGGGCTACATGTAATT-CTGT-CCGGT-TTC-CCTCTGCCTC-GAACTATTC---------CAGATTTGTTTCCT--CCCTT------CG-G----T---A--T-GATCTTTTAGTTCA------AAAACT--AAATT-CAAA-ATGA-A----GGTATT--C--GAGAA--G--AA--TT-CTTAAGACAT-T----G-CAATGCATATGCT----TTTAT--T--CGTTTTA-TTCTGAC---------------A-AAAA-TTCG-T-TA-GACTTGCAAC-GATTA-TCG-CAAGCATTCT--TAAA--G---A--TCGTA--AAAGC-ACTTGT-------T-T---------ATTG-T-AAGAAA--TTCTTGT-ATA
gi|13 : aaacttcgcaaagaatttaaattctcaacccaatcctaaatgattcatatgcattgttaaggcaattgtatggatgataaaccatgtgcattgatggtaatgataattcgcaaggttgttttatggtgatgttttttggtgttgatggagagtgtggcggtatagcaattggtgtgatataattgttagatatattattggTTT-CC-T-T----TGAGTTTTATTGCTTTT-------CTGGTCATT-TTTTTTTCTC---CATTT-G------TTG-G-------TAGGACTACATGTAATT-CTGTTC-GAT-TTC-CCTCTGCCTC-AAACCCTTC---------CAA-CTTTGTTTCCACCTCTCGACATACATGT---C---AG-TCAA------------------AAAACT--AAATT-AAAA-ATGA-A----TGTATT--C--GAGAAG-A--AT--GTGTT--AAAAATTC----A-CAACGCATGCGC--T--TTTAT--T--CATTTT-ATTCTAAATG-ACA----CTCGCA-AGAATTTCGTT-TA-GACTCGC-ATCGATTA-TCG-CAAGCA-TCG--T-AAGCG---G--TGGTA--AA-GC-AGTTGTA
gi|7 : ttagta-GTAATTTCTAT-CCGAT-TTCTC-TCTGCCCTCGACCCCTTCCAGGCTCCTC---CCCCCCCCCCACCCTCC------CA-G----C---A--T-GACTTGTTAATTTAGTTCCAAAAACTTCAAATCCAAAACACGACG----CGTAATGGC--GAAACAAG--CA--TTGTTACAAACACACCTCCG-CAACG-CATTGCCTTCCTTTAT--T--CATTTTA-TTCTAATTG-ATA----CTCACA-AGAA-TTCG-T-TA-GACTTGCAAC-AATTA-TCG-CAAGCATCCG--T-AA--A---G--TCGTGTCAAAGC-ATTTGT-ATC--AT-TCAGAAATAAATCG-TAAAGAAA--TTATT-T-ATA---------TATGGCAAAAAC--A--------------A----A-----------ATCATAAGCGTTCGTGTGTGGA---ATT--CATTA-------------A----AGTC-GC-AAA----G-C---T-AAAGAG---TC--GTAAG---A--CAG-TTG-T-AACACGATTCT-t
gi|8 : t-T-GA------------------AAAA-T--AAATT-AAAA--CGA-A----GGTATTT-C--GAAA---AGAAT--TTGTT-AAAAAAT------G-CAACGCACGTG------TTTAT--T--CGTTTTA-TTCTAACTG-ATA----CACGCC-AAGA-TTCG-T-TA-GACTTGCAAC-AAGTA-TAAGCAACCA-TCAATT-AG--G---G--TC-T---AAGGC-ATTTGT-ATCATAT-TCAG-AATTAATTGCT-AAAAA---TTCTT-T-ATA--------TTATTGCAAAAAA--ATCAC----------A----AGGTGTATAGG-A--------------------ATTTATC--A-----------------A----AGTCTGC-AAAACC-A--TCGT--AAGAT---TG--CGAAA------CAG-TTG-TAAA-ACGA-TC--TTAAGCCTTGAT----GA--TGTTTCAATA---TTTTAAAACACC-----ATC-TTGTTA--TA-T-CT-G-ACGAA-TTTTCT-G-CGAAC--GCCAA-----T----T-T-A-T--CAT-----TCGAA-CGAG---ATATTC-GC-ATAG
gi|15 : --AAATT-AAAA--CGA-A----GGTATT--TCAGAAA---G--AA--TTGTT-AAAAAAT-C----G-CAACG----CAC-GT--TTTATCTT--CGTTTTA--TCTA-CTGGATA-TC-GTCACG-ATAA-TTC--T-TA-A-CTTGCAAC--AATA-TAAGCAAACCATCA--TTAG--G---G--TC-TA--AAGGCCATTTGTA-TC--ATATCAGAAATTAATTG-T-AAGAAA---TCTT-TGATA--------TTATTGCAAAAAA--ATCAC----------A----AGGTTCGTATGGA--------------------ATTTATC--A-----------------A----AGTC-GCAAAA--C-A-CTCGT-AAAGAT---
gi|9 : aAATTCAAAA-ACGA-AAGGTTG-ATT--C--GACAAA-G--AA--TTGTT--AAAAAT-C----GTCGACG-CTATGCT-C--TTTAG-----CGTTTTTATTCTAATTG-ATA----CTCGCA-AGA--TTCG-T-TA-GATCTGCAAC-AATCA-TCG-CAAGCATTCG--T-G---G---G--TCGTG--AAG-C-ATGTGTA--T--AT-TCAGAAATTAATT--T-AAGAAA--TTCTT-T-ATA--------TTATCGCA-AAAA--A--------------ATCATA-----------AGTTCGTATGG----------A---ATT--C-----------------ATTAAAGTC-GC-AAAA-C-A-CTCGT-AAAGAT---TC--GTAAG---AC--AGCTTG-T-AA-ACGA-TCT-T---ACCTTGATG----A--T-TTTCAATA---TTTTAAAACC---A---AT--TTATTA--TT---CT-G-CCGAA-TTTTCT-GGCGAACG--CCAA-----AAGGTT-T-TAT--CAT-----TCGCA-AG-G---ATATTCGAC-ATAGT-GT-GAG
gi|5 : TCGTA-ATAA-TTCA-TATATAGTTCGTCAC-AATT---CG-CAAACATTCG--T-AA--G---GATTCGTA--AAGGT-
gi|16 : atactgctctcacactatgcccaatatcctgcgattgacgaaagatctgtcattccgcgtttcctcgactaatgatcgtaaatatacgcttagatatggcttgtactctactatgaagtaatcgtgccgttgtgagttattattaacgaatattagaaacatgctcctaaaattcgcaaggaattgaaatgctcaatccaatcgtaaataattcattatgcatttttaagccaatccgtattgatgcaagcatttgcattggTCGTATGGAA-TTCA-T-TA-AACTCGCAA---ACCACTCG-TAAAGATTCG--T-AA--GACAA--TCGTA--AAtggcaatttttgatgtcaaattttttcagtcggtgtccacggctttcaatcaccagaatcacggaattttattattctcgcttggcttttattgctttactgttcatgttttttttttcttctt
gi|17 : atcattcgcaagttaattgtaagaaattcttgtatattattgcaaaaaaatcataaggtCA-AGAA-TTCG-T-TA-GACTTGAAAC-AATTA-CCG-CAATCATTCG--T-AA--G---GG-TCGTA--AAGGC-ATTTGTA-TC--AG-TCAGAAATTAATTG-T-AAGACA---TTTT-T-ATA-T------CTATTGCAAAAAA--A--------------ATCATA-----------AGGTTCGTATGG---------A---ATT--CATTA-------------A----AGTC-GCAAAA--C-A-CTCGT-AAAGAT---TC--GTAAG---A--CAA-TTG-T-AA-ACGAcgatcttaagccttggtgatttttgatattttaaacacccaatcttattatttctgacaaattttctgcgaacgctaacatttttcattcgcaaggatattcggcacagtgtgagagc
gi|16 : ATC--AT-TCGCAAGTTAATTG-T-AAGAAA--TTCTTGT-ATA--------TTATTGCA-AAAA--A--------------ATCATA-----------AGGTTCGTATGG---------A---ATT--C-----------------ATTAAACTC-GC-AAA--CCA-CTCGT-AAAGAT---TC--GTAAG---AC--AA-TCG-T-AA-ACGA-TCT-TAA-GCCTTGGTG----A--T-TTTTGATA---TTT-TAAACACCCA---ATC-TTATTA--TT-T-CT-G-ACAAA-TTTTCT-G-CGAACG--CTAAC----A----T-T-T-TT-CAT-----TCGCA-AG-G---ATATTCGGC-ACAGT-GT-GAGAGCtcataagcaaggatattcggcatagtgtgaaagca
gi|14 : AATTAATTG-T-AAGAAA--TTCTT-T-ATATTATCTGATTATTGCAAAAAATCA--------------C----A-----------A--------------------G---GTT--CGTATGGAATTTCATATAA----AGTC-GC-AAA--C-A-CACGTGAAAGATAATTG--GTAAAGAAACACAG-TTGAT-AATACGA-TCT-TAAGCCCTTGATTG---A--T-TTTCAATG---TTTAATAAACCCTA---ATCATTGTTACATTGT-CT-GGACGAAATTTTCT-G-CGAACCCGCCAA-----AAA--T-T-T-T--CATG----TCGCA-AG-G---ATATTCGGC-ATAGTAGT-GAGA
gi|18 : --------------------A---ATCGTT-----------------A----ACTC-G--AAA--C-A-C-CG---AAAAT---TC--ATAAG---AC--AG-TTG-T-AA-ACTA-TCT-TAA-GCCTTGGT-----A--T-TTTTA-TA---TTTTAAAACCC--A---ATC-TTA-TA--TT-T-CTGG-ACAAA-TTTTCT-G-CGACCA-GCTAAC----A----T-T-T-T--CAT-----
gi|10 : aaaaaaaatcataagttcgtatg--C-----------------A----ACTC-GC-AAA--C-A-CTCGT-AAGGAT---Tcaca
gi|5 : tactgctctcacactatgccgaatatccttgcgattgacataagaatgtcattcgccgctcattcgcaatgatcgtatagctatcgctagacattcgtactcactctcaagtaatcgtcgccgttcgtgtgttttaacgaatattagaaacatgctcctaatattcgcaaggaattgaaattctcaatccaatcgtaaataattcatatgcattcttaagccaatcgtattgatggcaagccatttgcattgatcgtaatacattctttttatactcgtca--C-----------------A----ATTC-GC-AAA--C-A-TTCGT-AAGGAT---TC--GTAAcacgaaggtttggacaaattttgacgtcaatttt
gi|21 : atactgctctcacactatgcccaatatcctgcgattgacgaaagatctgtcattccgcgtttcctcgactaatgatcgtaaatatacgcttagatatggcttgtactctactatgaagtaatcgtgccgttgtgagttattattaacgaatattagaaacatgctcctaaaattcgcaaggaattgaaatgctcaatccaatcgtaaataattcattatgcatttttaagccaatccgtattgatgcaagcatttgcattggtcgtaataattcatatatagttcgtca-----------------A----AGTC-GC-AAA--C-A-CTCGT-AAAGGA---TAATGTAAG---AC-AAG-TTG-T-AA-ACGA-TCT-TAA-GCCTTGATGA--AAGCT-TTTCAATACTCTTTA-AAACCCCAATAAATC-TTGTTA--TT-T-CT-G-ACGAA-TTTTCT-aggttggcaatttttgatgtcaaattttttcagtcggtgtccacggctttcaatcaccagaatcacggaattttattattctcgcttggcttttattgctttactgttcatgttttttttttcttctt
gi|3 : atcataTC-GC-AAA--T-AACTCGT-AAAGAT---TC--ATAAG---A--CAG-TTG-T-AA-Aaat
gi|13 : agtaatcgtggtcgttggtgagttttaacgaatattaaaaatatgctcataaaattcgcgagaaattgaaatgttcaatccaattgtaaataattcatattgatggcaagccatttgcattgatttcaatacattccttatatactcgaacacactcgtaagaagagtgaaagttggggcaaatgttttgacatgtcaaattttttttcacgattgtccacggatttcaatcaccggaatcatcggaatttattatttctgctttggattttattgcttttctgttcatattttcatttggtcatctttggtaggactacatgtaattctgtccgatctccctctgtccggaccccttccagcgttgttcccacctcacggtatgagttgtcagttcaaaaactaaattcaaaatgaaggtattcgaaaataattgtttaaaaaatcccaacgcatgcgcttttatttgttttattctaactgacactcgtaaggattcgttagattcgcaacgattatcgcaagcattcgtatattattgccccccaaaaaatcataaggttcgtatggaattcgttaaacTC-GC-AAG--C-A--TCGT-AAGCGG---TG--GTAA----AG-CAG-TTG-T-A
gi|4 : ttagtatttcctttgagttttattgcttttctggtcatttttttttctccatttgttggtaggactacatgtaattctgttcgatttccctctgcctcaaacccttccaactttgtttccacctctcgacatacatgtcagtcaaaaaactaaattaaaaatgaatgtattcgagaagaatgtgttaaaaattcacaacgcatgcgcttttattcattttattctaaatgacactcgcaagaatttcgtttagactcgcatcgattaTC-GC-AAG--C-A-TTCTT-AAAGAT---C---GTAAA---AG-CAC-TTG-T-t
gi|20 : aaacttcgcaaagaatttaaattctcaacccaatcctaaatgattcatatgcattgttaaggcaattgtatggatgataaaccatgtgcattgatggtaatgataattcgcaaggttgttttatggtgatgttttttggtgttgatggagagtgtggcggtatagcaattggtgtgatataattgttagatatattattggaaccatcgaaagtattattccgcttgggttttattgatattatgttcattttattttggtcatctttggtacatgcagggctacatgtaattctgtccggtttccctctgcctcgaactattccagatttgtttcctcccttcggtatgatcttttagttcaaaaactaaattcaaaatgaaggtattcgagaagaattcttaagacattgcaatgcatatgcttttattcgttttattctgacaaaaattcgttagacttgcaacgattaGT-AAAGAT---TC--GTAAG---AC--AG-TTG-T-AA-ACGA-TCT-TAA-GCCTTGATG----A--T-TATCAATA---TTTTAAAACCAC-A---ATC-TTATTA--TT-T-CT-G-ACGAA-TTTTCT-G-CGAAC--GCCAA-----AAT--T-T-T-T--CAT-----TCGCA-AG-G---ATATTCGGC-ATAGT-GT-GAGAGttattgtaagaaattcttgtata
gi|23 : -AAAGAT---TC--GTAAG---AC--AG-TTG-T-AA-ACGA-TCG-TAA-GC----ATGGCTGA--T-TTTCAATA---TTTg
gi|24 : T-T-CT-G-ACAAAATTTTCT-A-CGAA-A-GCCAA-----AAT--T-T-T-T--CAT-----TCGCAGAG-G---ATATTC-GC-ATAGT-GTGGAGAGtctgcgaacgtcaaaacttttcattcgcaaggatattcggcatagtgtgagagcagc
gi|9 : T-G-TCGAA-TATCCTTG-CGAATG-ATAAA-----ACC--T-T-T-TGGCGT-----TCGCC-AG-A---AAATTCGGC-A
gi|23 : aattcaaaaacgaaaggttgattcgacaaagaattgttaaaaatcgtcgacgctatgctctttagcgtttttattctaattgatactcgcaagattcgttagatctgcaacaatcatcgcaagcattcgtgggtcgtgaagcatgtgtatattcagaaattaatttaagaaattctttatattatcgcaaaaaaatcataagttcgtatggaattcattaaagtcgcaaaacactcgtaaagattcgtaagacagcttgtaaacgatcttaccttgatgattttcaatattttaaaaccaatttattattcA-TTTTCT-G-CGAACG-TCAAA-----AC---T-T-T-T--CAT-----TCGCA-AG-G---ATATTCGGC-ATAGT-GT-GAGAGCAtagtgtgag
gi|10 : aaagattcgtaagacagttgtaaacgatcgtaagcatggctgattttcaat-TGAGCG-GCGAATGAC-A----T-T-C-T--TATGTCAATCGCA-AG-G---ATATTCGGC-ATAGT-GT-GAGAGCAgc
gi|12 : tac-TGAGCG-GCGAATGAATA----T-TCT-T--TATGTCA-TCGGA-AG-G---ATATTCGGC-ATAGT-GT-ttcgcaatgatcgtatagctatcgctagacattcgtactcactctcaagtaatcgtcgccgttcgtgtgttttaacgaatattagaaacatgctcctaatattcgcaaggaattgaaattctcaatccaatcgtaaataattcatatgcattcttaagccaatcgtattgatggcaagccatttgcattgatcgtaatacattctttttatactcgtcacaactcgcaaacactcgtaaggattcacgaaggtttggacaaattttgacgtcaatttt
gi|19 : atactgtc-TGAACG-GGAAATGAC-A----T-T-C-T--TATGTCAATCACA-AG-G---ATATTAGGC-ATAGT-GT-GAGAGCAttcgcacatgacgtataaatatgctagacattcgtactcactctcaatgtatcgtgcgttcgtgatctttaacatatagaattatctccacgtaattcgaaggaattggaaattctcaatcaatgtaaataattcatatgcattattatcgtacaggatggcagcattgcactgatcgtaatacaattccattttatactcgcacactcgcaaacgctctaggattcgtgaaaaggttgggcaaattttgacgtcgatattatttcaacattgtcc
gi|5 : tacGAATG-AC-AG-----A----TCT-T-T--CGTCAA--TCGCA--G-G---ATATTGGGC-ATAGT-GT-GAGAGCAgtcgcaatgatcttataggtattgctagttattcgtactcaatcttaagtaatcgtgctcgtttgtgagttttaacgaatactagaaacatgc
gi|11 : atac-T--CAT------CGGA-AG-G---ATATTCGGC-ATAGT-GT-cgcgtttcctcgactaatgatcgtaaatatacgcttagatatggcttgtactctactatgaagtaatcgtgccgttgtgagttattattaacgaatattagaaacatgctcctaaaattcgcaaggaattgaaatgctcaatccaatcgtaaataattcattatgcatttttaagccaatccgtattgatgcaagcatttgcattggtcgtaataattcatatatagttcgtcacaattcgcaaacattcgtaaggattcgtaaaggttggcaatttttgatgtcaaattttttcagtcggtgtccacggctttcaatcaccagaatcacggaattttattattctcgcttggcttttattgctttactgttcatgttttttttttcttctt
gi|17 : atactgtc-T--CAT-----AAGCA-AG-G---ATATTCGGC-ATAGT-GT-GAAAGCAcatagaagatgtcattcgacgctcattcgcaatgacgtataaatatcgctaacattcgtactcactctcaagtagttcgttgcgttcgttgatctttaacactgatagtaaatatctccacgtattcgaggaattggaattgctcaataatcgtaaataattcatatgcattattatcgtacagatggcgccatttgcacatcgtaataattccttttataactcgtcacaactcgcaacgctctaggaattgtgaaaaggtttgggcaaattttgacgtcgaattatttcacgatttgtcc
gi|28 : caagaattcgttagacttgaaacaattaccgcaatcattcgtaagggtcgtaaaggcatttgtatcagtcagaaattaattgtaagacatttttatatctattgcaaaaaaaatcataaggttcgtatggaattcattaaagtcgcaaaacactcgtaaagattcgtaagacaattgtaaacga-G---ATATTCGGC-ATAGT-GT-GAGAGCA
3 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|22 ): AGTTATAATCTTAAATTGTTATTGGACACGAGATAGCAAATAGCATGCTTTATTTTAAAAAGACGTCATTAAATGCAGGTTGAACTATAATAGCGAAAATACCAACTGTATGTACATATTAA
Unaligned ( gi|25 ): TTANNNNNNNNNNNNNNNNNNNNNNNNNAGAAAAGAGTATATATCTTGGTGTCATTA
Unaligned ( gi|27 ): GCNATGACATGCAGTTCTTGGATAATTTCTGT
Alignments
lowQualScore : 1111111111111111111111111111111111111111111111111111
lowQualScore : 1 1 1 1111 1 666666666666666666666666666 222222 11111 1 11111 1111 111 111 1111 1 1 3333333333333333333333 1 11 1111 22222222 111111 66666666666666666666666666 11 22222222 33333333333 11 111 3333333 111111 88888888888888888888888888888888888888 11 11 1111111111 11111 22 222222 222222222 5555555555555555555555555555555555555555555555555555 1 222 111 222 33333
lowQualScore : 1 5 4 2 77 1 5 5 1 5 5 0 2222 5 66 0 444444444444444444444444444 66 000000 22222 888 5 5 0 4 777 4 4 3 666 5 4 4 11111 9999 888888 4 3333 1 5 333 777 8 4 6666 4 4 0 4 1 2 4 22 4 4 555 8 4 4 4 66 2222222222222222222222 0 44 4 4 4 0 5 5 11 1 9999 5 2 66 88 4 4 55 777 66 66 666 66 2 66 5 5 66 5 00000000 999999 6 77777777777777777777777777 55 6 6 88 99 11 5 00000000 1 11111111111 6 33 1 5 222 11 8 8 666 0 8 6 1 6 999 6 3333333 1 999999 6 55555555555555555555555555555555555555 66 00 66 4 4 66 55 88 66 1 4 777 4 5555555555 4 55 33333 7777 22 3 4 4 888888 4 4 6 4 8 3 1 55 7 99 55 888 999 222222 4 0 3 3 55 7 777777777 0 3 8888 55 3 2 0000000000000000000000000000000000000000000000000000 3 0 999 555 2 555 77 555 111 6 3 3 6 3 88 2 3 888 666 3 55 4 88 9999 4 66 4 8 4 4 3 3 111 55 44444 55 88 4 3 666 3 4 4
lowQualScore : . . . . .. . . . . . . . .... . .. . ........................... .. ...... ..... ... . . . . ... . . . ... . . . ..... .... ...... . .... . . ... ... . . .... . . . . . . . .. . . ... . . . . .. ...................... . .. . . . . . . .. . .... . . .. .. . . .. ... .. .. ... .. . .. . . .. . ........ ...... . .......................... .. . . .. .. .. . ........ . ........... . .. . . ... .. . . ... . . . . . ... . ....... . ...... . ...................................... .. .. .. . . .. .. .. .. . . ... . .......... . .. ..... .... .. . . . ...... . . . . . . . .. . .. .. ... ... ...... . . . . .. . ......... . . .... .. . . .................................................... . . ... ... . ... .. ... ... . . . . . .. . . ... ... . .. . .. .... . .. . . . . . . ... .. ..... .. .. . . ... . . .
lowQualScore : 4 7 3 1 99 7 7 7 4 7 0 2 4444 0 99 0 111111111111111111111111111 44 444444 55555 888 0 0 1 4 888 4 4 3 222 7 4 4 11111 4444 999999 4 9999 1 0 888 444 9 4 1111 4 4 0 4 9 7 4 22 4 4 333 9 4 4 4 11 3333333333333333333333 1 66 4 4 4 8 0 0 00 4 4444 0 5 99 33 4 4 77 888 11 11 888 77 0 99 0 0 99 7 88888888 222222 7 33333333333333333333333333 77 7 7 55 22 00 7 99999999 0 77777777777 7 88 0 2 333 00 0 0 666 6 0 7 0 7 888 7 2222222 0 222222 7 22222222222222222222222222222222222222 99 77 33 4 4 11 00 00 11 0 4 222 4 4444444444 4 44 88888 0000 99 7 4 4 444444 0 0 2 0 0 6 3 00 3 55 55 555 777 111111 0 7 6 6 00 3 222222222 8 7 5555 77 6 1 8888888888888888888888888888888888888888888888888888 3 0 777 999 9 000 33 444 555 2 1 1 2 3 66 3 6 444 444 6 55 4 33 4444 4 11 0 0 0 0 6 6 333 55 66666 00 66 0 6 444 6 0 0
consensus : TGCTCTCCACACTA-TGCCGAATATCCTTGCGATT--GACATA-A-GA-ATGT-CATTCGC-CGCTCATTTC-G--CA-ATGAT--TC-----------GT----NAGC--TAT-CGCTA-A----CAT-----TCGTAC---TC-A-CTCTCAA-G---TAA-TC-GT-G-C-CGTTCG-T-GA-----GTT----TTAA---C-GAA-TATTAG----AAACATGCT-CC---TA--TA-TT-CG--C-AAGGA-A-TTTG-AAATTTCTC-AATCCAATCGTA-A-ATAA-T-TCA-T-A-TGC-A--TTNTTTAAGCCAAT-C-GTA-T--GATGGCAAG-CCA-TTTGCATT-GATC-GTAATACA-TTCC-TTTTATAACTCGTCAC--A-CTCGCAAACGCTCGTAAG--GATT-CG-TG-AAAGGTTTGGGCAAA---T--TTTGAC--GTC--GA-TTTTTTTTCA--CGA-TT-GTC--C-ACGG-----AT-TTCA------AT-CACCGGAA--------T---------T------TATTATTTCCG-CTT-GGG-TTT--TT--GCTTTT-CC-G-T----TGGNTTTTATTG-----------CT-TTTCTGTTCATNTTTTTTTTTTCAT--TT-GGT-CATCTTTG-TAGGACTACATGTAATT-CTGTCCGATTTC-CCTCTGCCT-CGACCCCTTC----C-AAGCTTTNTTCCC------ACC-TCTC-----G-----AC---CA-GT---CAGT---G----AAAAACT--AAATT-AAAA-ACGAA-G-GT--ATT--CGA-AA--AGAAT-T-G-TT-AAAAA---AT-C---G-CAACGCAT-GCGCT-T--TTTAT-T--CGTTTTAATTCTAACT-GAT-A---C--TCGCAAGAA-TTCG-TTAGACTTGCAAC-GATTAT-CGCAAG-CATTCG--T-AA--GG--TCGTA--AAGG-CATTTGTAATC--AT-TCAGAAATTAATTGT-AAG-AAA--TTCTT-TATA-T-------TTATTG----CA-AAAA-AATCAT---AGG--T-C--GTA---G--------------AAT--TCAT-A-A----AGTC-GC-AAA-C-AC--TCGT-AAAG---ATT--CGTA---AGAC-CAG-TTG-T-AA-ACGA-TC--TTAAG-CCTTGAT-GGA---T-TTTCAATA--TTTTA-AAA-CCCC----AATC-TTGTT--ATT-TCT-G-ACG-AA-TTTTCT-GCGAA-C-GCC--AA-AA--TTT--TCAT--TCGCA-AG-G---ATATTCGGC-ATAGT-GT-GAGAGCA
Reference ( family-2029 ) : TGCTCTCCACACTA-TGCCGAATATCCTTGCGANT--GACATA-A-GA-ATGT-CATTCGC-CGCTCATTTC-G--CA-ATGAT--TC-----------GT----TAG---TAT-CGCTA-A----CAT-----TCGTAC---TC-A-CTCTCAA-G---TAA-TC-GT-G-C-CGTTCG-T-GA-----GTT----TTAA---C-GAA-TATTAG----AAACATGCT-CC---TA--TA-TT-CG--C-AAGGA-A-TTTG-AAATTTCTC-AATCCAATCGTA-A-ATAA-T-TCA-T-A-TGC-A--TTNTTTAAGCCAAT-C-GTA-C--GATGGCAAG-CCA-TTTGCATT-GATC-GTAATACA-TTCC-TTTTATAACTCGTCAC--A-CTCGCAAACACTCGTAAG--GATT-CG-TG-AAAGGTTTGGGCAAA---T--TTTGAC--GTC--GA-TTTTTTTTCA--CGA-TT-GTC--C-ACGG-----AT-TTCA------AT-CACCGGAA--------T---------T------TATTATTTCCG-CTT-GGG-TTT--TT--GCTTTT-CT-G-T----TGGNTTTTATTG-----------CT-TTNTTGTTCNTGTTTTTTTTTTCAT--TT-GGT-CATCTTTG-TAGGACTACATGTAATT-CTGTCCGATTTC-CCTCTGCCC-CGACCCCTTC----CCAAGCTTTNTTCCC------ACC-TCTC-----G-----AT---CA-GT---CAGT---G----AAAAACT--AAATT-AAAA-ACGAA-G-GT--ATT--CGA-AA--AGANT-T-G-TT-AAAAA---AT-C---G-CAACGCAT-GCGCT-T--TTTAT-T--CGTTTTAATTCTAACT-GAT-A---C--TCGCAAGAA-TTCG-TTAGACTCGCAAC-GATTAT-CGCAAG-CATTCG--T-AA--GG--TCGTA--AAGG-CATTTGTAATC--AT-TCAGAAATTAATTGT-AAG-AAA--TTCTT-TATA-T-------TTATCG----CA-AAAA-AATCA----A----T-C--ATA---A--------------AAT--TC-----A----AGTC-GC-AAA-C-AC--TCGT-AAAG---ATT--CGTA---AGAC-CAG-TTG-T-AA-ACGA-TC--TTAAG-CCTTGAT-GGA---T-TTTCAATA--TTTTA-AAA-CCCC----AATC-TTATT--ATT-TCT-G-ACG-AA-TTTTCT-GCGAA-CGGCC--AA-A---TTT--TCAT--TCGCA-AG-G---ATATTCGGC-ATAGT-GT-GAGAGCA
gi|1 : CTCTACACACTA-GGCCGCATAC---TGCGAATTTGAGA-A-A-GATCTGT-CATTCGC-GG----TTTCTG--CT-ATGATC-TCAAATACTGGATGT----TAG---TA---GGTG-G----C-T-----TCGTACCTCTC-A-CTAGTAA-G---TAA-TCCGT-G-G-CGTT-G-T-GGTTATTATT----ATAA---C-GAAATATTAG----AAACATGCT-CC---TA--CA-TTGCG--CTAAGGA-A-ATTGCAAAATGCTCAAATCCAATCGTATATATAATT-TCATT-A-TGCAA--TTTTTTAAGCCAATGC-GTATT--GATGGCAAGAGCA-TTTGCATTGGGTCGGTAATA-A-TT-A-TTATATAGTTCGTCACGAA-CTCGC-AACATTCGTAAG--GATTGCG-TG-AAAGGTT--GGCAAATTGT--TTTGAT--GTC--AA-ATTTTT------CG--TC-GTC--CGACGG-----GC-TTTA------AT-CACCAGAATCCGGAATT---------T------TATTATTT-CG-CTTCGGG-CTTTATT--GCTTTGACT-G-TTTCATGGTTTTTATTATTCTTCTTTATCT-TTATTTTTTTTTTTTTTTTTTACAT--TTGGGT-CA--ATTG-TAG------ATG-AGC-----TCCGATTTCTCCTC--------A------C----CCAAGTTTTTCGCTC------ACG-TC-------------AG---CA--T---AAGT---G------TTGTT--CAATT--AAC-ATGAA-G-TT--G-T--CG--AA--AGAAT-T---TT-AAAAAT--GT-C---G---ACGCTA-GCCTC-C--TTTATATGGCGTTT---TTCTAATT-GATCA---C--TCG-AAGAA-TTCG-TTAGACT-GCAAC-AATC-T-CGC-AG-CATTCG--TGAA--GG--TCGTG--AA-G-CATGTGTA--T--AT-TCACAAATTAATTGT-AAGTTAA--TCTTT-TATA-T-------TTATCG----C--AAAA-AATCAT---AAGGTT-C--GTG---AGG------------AAT--TCTTA--A----AGTC-GCAAAA-C-AC--TCGT-AAAG---ATT--CGTA---AGA--CAGCTTG-T--A-ACGA-TCGATTA----CTTGAT-GAT---C-TTTCAATA--TTTTA-AAA--CTC----AATT-CTATT--ATT---T-GCACG-AA-TTTCGT-GCGAA--AGCC--AA-AAGGTTT--TTATCATAG-A-AG-GAAAATATTCGACTATAGT-GT-GA
gi|10 : TGCTCTC-ACACTA-TGCCGAATATCCTTGCGATT--GACATA-A-GA-ATGT-CATTCGC-CGCTCATT-C-G--CA-ATGAT---C-----------GTA---TAGC--TAT-CGCTAGA----CAT-----TCGTAC---TC-A-CTCTCAA-G---TAA-TC-GTCG-C-CGTTCG-T-GT-----GTT----TTAA---C-GAA-TATTAG----AAACATGCT-CC---TAA-TA-TT-CG--C-AAGGA-A-TT-G-AAATT-CTC-AATCCAATCGTA-A-ATAA-T-TCA-T-A-TGC-A--TTC-TTAAGCCAAT-C-GTATT--GATGGCAAG-CCA-TTTGCATT-GATC-GTAATACA-TTCT-TTTTAT-ACTCGTCACA-A-CTCGCAAACACTCGTAAG--GATT-CA-CG--AAGGTTTGGACAAA---T--TTTGAC--GTC--AA-TTTTa
gi|11 : tacTACTGTCCACACTA-TGCCGAATATCCTTCCGA-T--GACATAGA-AG-ATGT-CATTCGA-CGCTCA-TTC-G--CA-ATGAC--GT-----------AT----AAA---TAT-CGCTA-A----CAT-----TCGTAC---TC-A-CTCTCAA-G---TAGTTC-GT-T-G-CGTTCGTT-GA-----TCT----TTAA---C--AC-TGATAGT---AAATAT-CT-CCA--CG--TA-TT-CG-----AGGA-A--TTG-GAATTGCTC-AAT--AATCGTA-A-ATAA-T-TCA-T-A-TGC-A--TTATT-------AT-C-GTA-CA-GATGGC--G-CCA-TTTGCAC---ATC-GTAATA-A-TTCC-TTTTATAACTCGTCACA-A-CTCGC-AACGCTC-TAGG--AATT--G-TGAAAAGGTTTGGGCAAA---T--TTTGAC--GTC--GA--ATTATTTCA--CGATTT-GTC--C-
gi|12 : aTACTGTCCACACTA-TGCCGAATATCCTTCCGA-T--GACATA-AAGA-ATATTCATTCGC-CGCTCATT-C-G--CACATGAC--GT-----------AT----AAA---TAT--GCTAGA----CAT-----TCGTAC---TC-A-CTCTCAATG---TA--TC-GT-G-C--GTTCG-T-GA-----TCT----TTAA---C---A-TAT-AG----AATTAT-CT-CCACGTA---A-TT-CG----AAGGA-A-TTGG-AAATT-CTC-AATC-AAT-GTA-A-ATAA-T-TCA-T-A-TGC-A--TTATT-------AT-C-GTA-CAGGATGGCAG---CA-TT-GCACT-GATC-GTAATACAATTCCATTTTATA-CTCG-CAC--A-CTCGCAAACGCTC-TA-G--GATT-CG-TG-AAAAGGTTGGGCAAA---T--TTTGAC--GTC--GA-TATTATTTCA--ACA-TT-GTC--C-
gi|13 : aTTT-CC-T-T----TGAGTTTTATTG-----------CT-TTTCTGGTCATTTTTTTTTCTCCAT--TT-G-------TTGG-TAGGACTACATGTAATT-CTGTTCGATTTC-CCTCTGCCT-CAAACCCTTC----C--AACTTTGTTTCC------ACC-TCTC-----G-----ACATACATGT---CAGTC--A----AAAAACT--AAATT-AAAA-ATGAA-T-GT--ATT--CGA-GA--AGAATGT-G-TT-AAAAA---TT-C---A-CAACGCAT-GCGC--T--TTTAT-T--CATTTT-ATTCTAAAT-GAC-A---C--TCGCAAGAATTTCGTTTAGACTCGCATC-GATTAT-CGCAAG-CA-TCG--T-AAGCGG--TGGTA--AA-G-CAGTTGTA
gi|14 : ttagtaAATTAATTGT-AAG-AAA--TTCTT-TATA-TTATCTGATTATTG----C--AAAA-AATCAC---AAGGTT-C--GTATGGA--------------ATT--TCATATAA----AGTC-GC-AAA-C-AC--ACGTGAAAGATAATT--GGTAAAGAAACACAG-TTGAT-AATACGA-TC--TTAAGCCCTTGAT-TGA---T-TTTCAATG--TTTAATAAA-CCCT----AATCATTGTTACATTGTCTGG-ACGAAA-TTTTCT-GCGAACCCGCCAAAA-A---TTT--TCATG-TCGCA-AG-G---ATATTCGGC-ATAGTAGT-GAGAt
gi|15 : --AAATT-AAAA--CGAA-G-GT--ATTT-CAG-AA--AGAAT-T-G-TT-AAAAA---AT-C---G-CAACGCA---CGTT-T--TATCT-T--CGTTTTA--TCT-ACTGGAT-A---TCGTCACGATAA-TTC--TTA-ACTTGCAAC-AA-TATAAGCAAACCATCAT--T-AG--GG--TC-TA--AAGGCCATTTGT-ATC--ATATCAGAAATTAATTGT-AAG-AAA--TCTTT-GATA---------TTATTG----CA-AAAA-AATCAC---AAGGTT-CGTATG---G--------------AAT--TTATCA-A----AGTC-GCAAAA-C-AC--TCGT-AAAG---AT
gi|16 : aATC--AT-TCGCAAGTTAATTGT-AAG-AAA--TTCTTGTATA-T-------T-ATTG----CA-AAAA-AATCATA--AGGT-T-C--GTATG-G--------------AAT--TC-----ATTAAACTC-GC-AAA-CCAC--TCGT-AAAG---ATT--CGTA---AGAC--AA-TCG-T-AA-ACGA-TC--TTAAG-CCTTGGT-G-A---T-TTTTGATA--TTTTA-AAC-ACCC----AATC-TTATT--ATT-TCT-G-ACA-AA-TTTTCT-GCGAA-C-GCT--AACAT--TTT--TCAT--TCGCA-AG-G---ATATTCGGC-ACAGT-GT-GAGAGC
gi|17 : CAAGAA-TTCG-TTAGACTTGAAAC-AATTAC-CGCAAT-CATTCG--T-AAG-GG--TCGTA--AAGG-CATTTGT-ATC--AG-TCAGAAATTAATTGT-AAG-ACA--TT-TT-TATA-T-------CTATTG----CA-AAAA-A---A----A----T-C--ATA---AGGTTCGTATGG---AAT--TCATTA-A----AGTC-GCAAAA-C-AC--TCGT-AAAG---ATT--CGTA---AGA--CAA-TTG-T-AA-ACGA-TC--ATAAG-C----AA-GGA---T-ATTC
gi|17 : --TCAT--AAGCA-AG-G---ATATTCGGC-ATAGT-GT-GAAAGCAggcatagtgtgaaagca
gi|18 : caagaattcgttagacttgaaacaattaccgcaatcattcgtaagggtcgtaaaggcatttgtatcagtcagaaattaattgtaagacatttttatatctattgcaaaaaaaatcataaggttcgtatggaattcattaaagtcgcaaaacactcgtaaagattcgtaagacaattgtaaacgaA-AAAA-AATCATA--AGT--T-C--GTAT--G--------------AATCGTT-----A----ACTC-G--AAA-C-AC---CG---AAA---ATT--CATA---AGAC--AG-TTG-T-AA-ACTA-TC--TTAAG-CCTTGGT---A---T-TTTTA-TA--TTTTA-AAA-CCC-----AATC-TTA-T--ATT-TCTGG-ACA-AA-TTTTCT-GCGAC-CAGCT--AACA---TTT--TCAT--
gi|19 : aTGCTCTC-ACACTA-TGCCTAATATCCTTGTGATT--GACATA-A-GA-ATGT-CATTTCC-CGTTCA-GTC-G--CA-ATGATC-TT-----------AT----AGG---TAT-TGCTA-GT---TAT-----TCGTAC---TC-A-ATCTTAA-G---TAA-TC-GT-G-CTCGTTTG-T-GA-----GTT----TTAA---C-GAA-TACTAG----AAACATGCcaca
gi|2 : tacTGCTCTCCACACTAGTGCTGAATATCCTT-CGATT--GACATA-A-GA-ATGC-CATTCGC-CGCTCATTTC-G--CA-ACGAT--TC-----------GT----TAGC--TAT-CGCTA-A----CAT-----TCGTAC---TC-A-CTC-CAA-G---CAA-TC-GTCG-C-CGTTCA-T-GA-----GTT----TTAA-----GAA-TATTA-----AAACATGCTGCC---TA--TA-TT-CG--CAAAGGA-ATTTTG-AAATTTCTC-AAT-CAATCGTA-A-ATAA---TCATT-A-TGC-A--TTCTTTAAGCCAAT-C-GTA-T--GATGGCAAG-CCA-TTTGCATT-GATC-GTAATACA-TTCC-TTTTATTACTCGTCAC--A-CT-GCAAACACTCGTAAG--GATT-CGTTG-AAAGGTTTGGGCAAA---T--TTTGAC--GTC--AA-TTTTTTTCCA--CGA-TT-GTC--C-ACGG-----AT-TTCA------AT-CATCGGAA--------T---------T------TATTATTTCCG-CTT-GGGTTTT--TT--GCTTTT-CT-G-T----TGGTTTTTGTTG-----------TTGTTTTTGTTGTTGTTTTTTTTTTCAT--TT-GGT-CATCTTTG-TAGGAATAAA-GTAATT-CTGT-CGATTT--CCTCTGCCT-TGACCCCTTCGGCTTCAAGCTTTTTTCCC------ACC-TCTC----------------CA-G----CAGT---G----AAAAACT--AAATT-AAAA-ACGAA-T-GT--ATT--CG--AT--AGATT-T-GTTT-AAAAA---ATAC---G-CAACG-AT-TTGCTGT--TTTAT-T--CGTTTTAATTCTAACT-GAT-AGTCC--TCGCAAGAA-TTCG-TTAAACTTGCGACTGATTAT-CACAAG-CATTCA--T-AA--GG--TCGTA--AAGG-TATTTGTAATC--AT-TCAGAAATTAATTGT-AAG-AAAGTTTCTT-TATAGT-------TTATTG----CATAAAA-AA-------------------A---A--------------AAT--CC-----A----AGTC-GC-AAA-C-AC--TCGT-AAAG---ATT--GGTA---AGAC-CAG-TTG-T-AA-ACGAGTCT-TTATG-CCTTGATGGGA---T-TTTCAATA--TTTAG-AAACCCCC----AATC-TTGTT--ATT-TCT-G-ACG-AA-TTTTCT-GTGAA-CGGCC--AA-A---TTT--TCAT--TCGCA-AG-G---ATATTCGGC-ATAGT-GT-GAGAGCA
gi|20 : GT-AAAG---ATT--CGTA---AGAC--AG-TTG-T-AA-ACGA-TC--TTAAG-CCTTGAT-G-A---T-TATCAATA--TTTTA-AAA-CCAC----AATC-TTATT--ATT-TCT-G-ACG-AA-TTTTCT-GCGAA-C-GCC--AA-AAT-TTT--TCAT--TCGCA-AG-G---ATATTCGGC-ATAGT-GT-GAGAG
gi|21 : ----A----T-C--ATA---A--------------A-----------------GTC-GC-AAA-C-AC--TCGT-AAAG---GATAATGTA---AGAC-AAG-TTG-T-AA-ACGA-TC--TTAAG-CCTTGAT-GAAAGCT-TTTCAATACTCTTTA-AAA-CCCCAATAAATC-TTGTT--ATT-TCT-G-ACG-AA-TTTTCT-g
gi|23 : -AAAG---ATT--CGTA---AGAC--AG-TTG-T-AA-ACGA-TC--GTAAG-CATGGCT--GA---T-TTTCAATA--TTTTaat
gi|23 : A-TTTTCT-GCGAA-CGTCA--AA-AC--TTT--TCAT--TCGCA-AG-G---ATATTCGGC-ATAGT-GT-GAGAGCActgcgaacgtcaaaacttttcattcgcaaggatattcggcatagtgtgagagcagc
gi|24 : aaagattcgtaagacagttgtaaacgatcgtaagcatggctgattttcaatT-TCT-G-ACA-AAATTTTCT-ACGAA--AGCC--AA-AAT-TTT--TCAT--TCGCAGAG-G---ATATTC-GC-ATAGT-GTGGAGAGgc
gi|26 : T-CG-TG-AAAGGTTTGGGCAAA---T--TTTGAC--GTC--GA-TTTATTTTCA--CGA-TT-GTC--
gi|28 : -G---ATATTCGGC-ATAGT-GT-GAGAGCA
gi|3 : A-G---TAA-TC-GT-GGT-CGTTGG-T-GA-----GTT----TTAA---C-GAA-TATTAA----AAATATGCT-CA---TA--AAATT-CG--C-GAGAA-A-TT-G-AAATGT-TC-AATCCAATTGTA-A-ATAA-T-TCA-T-A-T---------------------------T--GATGGCAAG-CCA-TTTGCATT-GATT-TCAATACA-TTCC-TTATATA-------------CTCGAACACACTCGTAAGAAGA----G-TG-AAAG-TTGGGGCAAA---TGTTTTGACATGTC--AAATTTTTTTTCA--CGA-TT-GTC--C-ACGG-----AT-TTCA------AT-CACCGGAA--------TCATCGGAATT------TATTATTTCTG-CTT-------------------------------TGGATTTTATTG-----------CT-TTTCTGTTCATATTTT------CAT--TT-GGT-CATCTTTGGTAGGACTACATGTAATT-CTGTCCGATCTC-CCTCTGTCC-GGACCCCTTC----C--AGCGTTGTTCCC------ACC-TCAC-----GGT---AT---GA-GTTGTCAGT---TC---AAAAACT--AAATT-CAAA-ATGAA-G-GT--ATT--CGA-AA--ATAAT-T-G-TTTAAAAA---AT-C---C-CAACGCAT-GCGCT-T--TT-AT-T--TGTTTTA-TTCTAACT-GAC-A---C--TCGTAAGGA-TTCG-TTAGATTCGCAAC-GATTAT-CGCAAG-CATTCG--T-Agcatagg
gi|3 : -CACTCG--T-AA--GGATTCGTT--AG----ATTCGCAACG--AT-T---------ATCGC-AAG--CA--TTC-G-TATA---------TTATTGCCCCCC-AAAA-AATCAT---AAGGTT-CGTATG---G--------------AAT--TCGTTA-A----ACTC-GC-AAA-TAAC--TCGT-AAAG---ATT--CATA---AGA--CAG-TTG-T-AA-Atattattgccccccaaaaaatcataaggttcgtatggaattcgttaaactcgcaaataactcgtaaagattcataagacagttgtaaa
gi|4 : agtaatcgtggtcgttggtgagttttaacgaatattaaaaatatgctcataaaattcgcgagaaattgaaatgttcaatccaattgtaaataattcatattgatggcaagccatttgcattgatttcaatacattccttatatactcgaacacactcgtaagaagagtgaaagttggggcaaatgttttgacatgtcaaattttttttcacgattgtccacggatttcaatcaccggaatcatcggaatttattatttctgctttggattttattgcttttctgttcatattttcatttggtcatctttggtaggactacatgtaattctgtccgatctccctctgtccggaccccttccagcgttgttcccacctcacggtatgagttgtcagttcaaaaactaaattcaaaatgaaggtattcgaaaataattgtttaaaaaatcccaacgcatgcgcttttatttgttttattctaactga-TT-CG--C-AAAGA-A-TTTA-AA--TTCTC-AACCCAATCCTA-A-ATGA-T-TCA-T-A-TGC-A--TTG-TTAAGGCAAT-T-GTA-TG-GATGATAAA-CCA-TGTGCATT-GATG-GTAAT
gi|4 : aaacA------AC-CATCGAAA--------G---------T-------ATTATT-CCG-CTT-GGG-TTT--Tgataattcgcaaggttgttttatggtgatgttttttggtgttgatggagagtgtggcggtatagcaattggtgtgatataattgttagatatattattggaaccatcgaaagtattattccgcttgggttttattgatattatgttcattttattttggtcatctttggtacatgcagggctacatgtaattctgtccggtttccctctgcctcgaactattccagatttgtttcctcccttcggtatgatcttttagttcaaaaactaaattcaaaatgaaggtattcgagaagaattcttaagacattgcaatgcatatgcttttattcgttttattctgacaaaaattcgttagacttgcaacgattatcgcaagcattcttaaagatcgtaaaagcacttgtttattgtaagaaattcttgtata
gi|4 : aaacttcgcaaagaatttaaattctcaacccaatcctaaatgattcatatgcattgttaaggcaattgtatggatgataaaccatgtgcattgatggtaatgataattcgcaaggttgttttatggtgatgttttttggtgttgatggagagtgtggcggtatagcaattggtgtgatataattgttagatatattattggTT-CC-GCT----TGGGTTTTATTG-----------AT-ATTATGTTCATTTTATTTTGGTCATCTTT-GGTACAT----G-CAGGGCTACATGTAATT-CTGTCCGGTTTC-CCTCTGCCT-CGAACTATTC----C--AGATTTGTTTCC------TCC-CTTC-----GGTATGAT---CT-TT---TAGT---TC---AAAAACT--AAATT-CAAA-ATGAA-G-GT--ATT--CGA-GA--AGAAT-T-C-TT-AAGAC---AT-T---G-CAATGCAT-ATGC--T--TTTAT-T--CGTTTT-ATTCTGA-----------------CAAAAA-TTCG-TTAGACTTGCAAC-GATTAT-CGCAAG-CATTCT--TAAA--GA--TCGTA--AAAG-CACTTGT-------T-T---------ATTGT-AAG-AAA--TTCTTGTATA-attgatattatgttcattttattttggtcatctttggtacatgcagggctacatgtaattctgtccggtttccctctgcctcgaactattccagatttgtttcctcccttcggtatgatcttttagttcaaaaactaaattcaaaatgaaggtattcgagaagaattcttaagacattgcaatgcatatgcttttattcgttttattctgacaaaaattcgttagacttgcaacgattatcgcaagcattcttaaagatcgtaaaagcacttgtttattgtaagaaattcttgtata
gi|5 : aaacttcgcaaagaatttaaattctcaacccaatcctaaatgattcatatgcattgttaaggcaattgtatggatgataaaccatgtgcattgatggtaatgataattcgcaaggttgttttatggtgatgttttttggtgttgatggagagtgtggcggtatagcaattggtgtgatataattgttagatatattattggaaccatcgaaagtattaTGCTCTC-ACACTA-TGCCCAATATCCT-GCGATT--GACGAA-A-GATCTGT-CATTCCG-CGTTT-CCTC-GACTA-ATGAT---C-----------GT----AAA---TATACGCTT-A----GATATGGCTTGTAC---TCTA-CTATGAA-G---TAA-TC-GT-G-C-CGTT-G-T-GA-----GTTATTATTAA---C-GAA-TATTAG----AAACATGCT-CC---TA--AAATT-CG--C-AAGGA-A-TT-G-AAATG-CTC-AATCCAATCGTA-A-ATAA-T-TCA-TTA-TGC-A--TT-TTTAAGCCAAT-CCGTA-TT-GATG-CAAG-C-A-TTTGCATT-GGTC-GTAATA-A-TTCA-TAT-ATAGTTCGTCAC--AATTCGCAAACATTCGTAAG--GATT-CG-T--AAAGGTT--GGCAAT---T--TTTGAT--GTC--AA-ATTTTTT-CAGTCGG-T--GTC--C-ACGG-----CT-TTCA------AT-CACCAGAA--------T-------------------------CA-C---GGA-ATT--TT--ATTATT-CTCGCT----TGGCTTTTATTG-----------CT-TTACTGTTCATGTTTTTTTTTTC
gi|6 : atacTCCGCACGCTCACT-C-G--CAGATGATGGTT-----------ATGGCATAGCTATAC-CGCTT-AGACTCAT-----TCGTAC---TC-ATCTCTCAA-GTATTAG-TC-GTGG-C-CGTTCG-TCGA-----GTT----TAAAGGGCGGAA-TATTAGATCTAGACATGCG-CC---TAATTA-TT-TAGCC-AAGGACA-TTTG-CA--TTCTC-ATTCAAATCTCG-A-ATAA-TATCA-T-ATTGC-ATGTCCTCTAATTCA------------GAT-------CCATTTTGCTTT-GATC-G---TATG-TTTC-TTTttctt
gi|6 : TCGTAAT--GATT--G-TG-AA----TT----------T--TTT-AC--GTTCAAA-TTTTTTTTCA--CGA-TTTGTCGCT-ACGATTTTTATATTCACTGGATATGCATCGGAA--------T---------TGGGGGGTATCATTTCCGTCTT-GGG-TTT--TTATGCTTTT-CT-G-T----TGatctacccaatatgataagataactttgtatttatatgtggctgacgatctttttcgtaatgattgtgaattttttacgttcaaattttttttcacgatttgtcgctacgatttttatattcactggatatgcatcggaattggggggtatcatttccgtcttgggtttttatgcttttctgttgccc
gi|7 : tccgcacgctcactcgcagatgatggttatggcatagctataccgcttagactcattcgtactcatctctcaagtattagtcgtggccgttcgtcgagtttaaagggcggaatattagatctagacatgcgcctaattatttagccaaggacatttgcattctcattcaaatctcgaataatatcatattgcatgtcctctaattcagatccattttgctttgatcgtatgtttctttatctacccaatatgataagataactttgtatttatatgtggctgacgatcttttTGTAATTTCTATCCGATTTC-TCTCTGCCCTCGACCCCTTC----C-AGGCTCCTCCCCCCCCCCCACCCTCCCAGCATG-----AC---TT-GT---TAATTTAGTTCCAAAAACTTCAAATCCAAAACACGAC-GCGT--AATGGCGA-AACAAGCAT-T-G-TT-ACAAACACAC-CTCCG-CAACGCATTGC-CT-TCCTTTAT-T--CATTTTA-TTCTAATT-GAT-A---C--TCACAAGAA-TTCG-TTAGACTTGCAAC-AATTAT-CGCAAG-CATCCG--T-AA--AG--TCGTGTCAAAG-CATTTGT-ATC--AT-TCAGAAATAAATCGTAAAG-AAA--TTATT-TATA----------TATGG----CA-AAAACAA--A----A----T-C--ATA---AGCGTTCGTGTGTGGAAT--TCATTA-A----AGTC-GC-AAA---GC-----T-AAAG---AGT--CGTA---AGA--CAG-TTG-T-AACACGA-Tccc
gi|8 : T---G----AAAAA-T--AAATT-AAAA--CGAA-G-GT--ATTT-CGA-AA--AGAAT-TTG-TT-AAAAA---AT-----G-CAACGCAC-GTG------TTTAT-T--CGTTTTA-TTCTAACT-GAT-A---C--ACGCCAAGA-TTCG-TTAGACTTGCAAC-AAGTATAAGCAAC-CA-TCAATT-AG--GG--TC-T---AAGG-CATTTGT-ATCATAT-TCAG-AATTAATTGC-TAA-AAA--TTCTT-TATA---------TTATTG----CA-AAAA-AATCACAAGG----TGT--ATAG--G--------------AAT--TTATCA-A----AGTCTGC-AAA---ACCATCGT--AAG---ATTG-CGAA---A----CAG-TTG-TAAA-ACGA-TC--TTAAG-CCTTGAT--GA---TGTTTCAATA--TTTTA-AAA-CACC-----ATC-TTGTT--ATA-TCT-G-ACG-AA-TTTTCT-GCGAA-C-GCC--AA-T---TTA--TCAT--TCGAA-CGAG---ATATTC-GC-ATAGtct
gi|9 : AATTCAAAA-ACGAAAG-GTTGATT--CGACAA--AGAAT-T-G-TT-AAAAA----T-C---GTCGACGC-T-ATGCT-C--TTTAG----CGTTTTTATTCTAATT-GAT-A---C--TCGCAAGA--TTCG-TTAGATCTGCAAC-AATCAT-CGCAAG-CATTCG--T-G---GG--TCGTG--AAG--CATGTGTA--T--AT-TCAGAAATTAATT-T-AAG-AAA--TTCTT-TATA-T-------T-ATCG----CA-AAAA-AATCATA--AGT--T-C--GTATG-G--------------AAT--TC-----ATTAAAGTC-GC-AAAAC-AC--TCGT-AAAG---ATT--CGTA---AGA--CAGCTTG-T-AA-ACGA-TC--TTA---CCTTGAT--GA---T-TTTCAATA--TTTTA-AAA---CC----AAT--TTATT--A-T-TCT-G-CCG-AA-TTTTCTGGCGAA-C-GCC--AA-AAGGTTTTATCAT--TCGCA-AG-G---ATATTCGAC-ATAGT-GT-GAG
3 sequences could not be aligned to this reference sequence:
Unaligned ( gi|22 ): AGTTATAATCTTAAATTGTTATTGGACACGAGATAGCAAATAGCATGCTTTATTTTAAAAAGACGTCATTAAATGCAGGTTGAACTATAATAGCGAAAATACCAACTGTATGTACATATTAA
Unaligned ( gi|25 ): TTANNNNNNNNNNNNNNNNNNNNNNNNNAGAAAAGAGTATATATCTTGGTGTCATTA
Unaligned ( gi|27 ): GCNATGACATGCAGTTCTTGGATAATTTCTGT
Alignments
lowQualScore : 1 1 1111 1 4444444444444 111 22222222222222222222 1 11111 1111 111 111 1111 1 1 11 2222222222222222222222 1 11 1111 22222222 222222 8888888888888888 11111111111111 1111 1111 1111 2222222 11 11111111 11111 111111 88888888888888888888888888888888888888 11 11 1111111111 11111 22 11111 222222 22222222222 555555555555555555 1 222 111 11 22
lowQualScore : 1 5 4 77 1 5 5 1 5 5 0 2222 5 66 0 5555555555555 5 66 666 66666666666666666666 888 5 5 0 4 777 4 4 3 666 5 4 4 11111 9999 888888 4 3333 1 5 333 777 8 4 6666 4 4 0 4 1 2 4 22 4 4 4 4 4 8 4 00 5555555555555555555555 0 0 4 4 4 4 0 5 66 11 1 9999 1 2 66 88 4 4 55 66 777 66 666 66 2 66 5 5 66 5 00000000 333333 8 4444444444444444 3 8 0 88888888888888 5 4444 2222 1 6 4444 1 1 1111111 11 99999999 0 8 6 5 6 1 2 66666 9 1 999999 6 44444444444444444444444444444444444444 66 8 11 4 4 66 55 4 66 4 777 4 5555555555 4 55 33333 7777 55 3 4 4 888888 4 4 4 8 4 0 55 33333 2 555 777 333333 4 4 55 666 3 3 55 7 66666666666 3 3 666 666666666666666666 3 555 6 3 555 3 6 999 777 3 555 77 555 000 6 3 3 6 3 88 2 3 888 666 3 55 4 33 9999 4 66 4 8 4 4 3 3 55 4 4 77 88 88 4 3 666 3 4 4
lowQualScore : . . . .. . . . . . . . .... . .. . ............. . .. ... .................... ... . . . . ... . . . ... . . . ..... .... ...... . .... . . ... ... . . .... . . . . . . . .. . . . . . . . .. ...................... . . . . . . . . .. .. . .... . . .. .. . . .. .. ... .. ... .. . .. . . .. . ........ ...... . ................ . . . .............. . .... .... . . .... . . ....... .. ........ . . . . . . . ..... . . ...... . ...................................... .. . .. . . .. .. . .. . ... . .......... . .. ..... .... .. . . . ...... . . . . . . .. ..... . ... ... ...... . . .. ... . . .. . ........... . . ... .................. . ... . . ... . . ... ... . ... .. ... ... . . . . . .. . . ... ... . .. . .. .... . .. . . . . . . .. . . .. .. .. . . ... . . .
lowQualScore : 4 7 3 99 7 7 7 4 7 0 2 4444 0 99 0 1111111111111 6 99 444 44444444444444444444 888 0 0 1 4 888 4 4 3 222 7 4 4 11111 4444 999999 4 9999 1 0 888 444 9 4 1111 4 4 0 4 9 7 4 22 4 4 4 4 4 9 4 66 9999999999999999999999 1 1 4 4 4 4 8 0 44 00 4 4444 4 5 99 33 4 4 77 11 888 11 888 77 0 99 0 0 99 7 88888888 000000 0 8888888888888888 2 0 8 44444444444444 7 7777 1111 0 7 2222 0 5 7777777 00 22222222 6 0 7 2 7 0 5 77777 8 0 222222 7 99999999999999999999999999999999999999 99 9 88 4 4 11 00 4 11 4 222 4 4444444444 4 44 88888 0000 77 7 4 4 444444 0 0 0 0 0 8 55 88888 5 999 222 777777 0 0 00 444 6 6 00 3 88888888888 6 6 444 000000000000000000 6 888 7 3 888 3 7 444 333 1 444 99 888 888 7 3 3 7 3 66 3 6 444 444 6 55 4 99 4444 4 11 0 0 0 0 6 6 55 0 0 00 66 66 0 6 444 6 0 0
consensus : TGCTCTCCACACTA-TGCCGAATATCCTTGCGA--TTGACATA-A-GA-ATGT-CATTCGC-CGCTCATTTC-G--CA-ATGAT--TCGT-A----AGCT--AT--CGCTA-A----CA------T-----TCGTAC---TC-A-CTCTCAA-G---TAA-TC-GT-G-C-CGTTCG-T-GA-----GTT----TTAA---C-GAA-TATTAG----AAACATGCT-CC---TA--TA-TT-CG--C-AAGGA-A-TTTG-AAATTTCTCAA-TCCAATCGTA-A-ATAAT-T-CA-T-A-TGCA--TTNTTTAAGCCAAT-C-GTA-T--GATGGCAAGC-CA-TTTGCATTGA-TCG-TAATACA-TTCC-TTTTATAACTCGTCAC--A-CTCGCAAACGCTCGTAAG--GATT-CG-TG-AAAGGTTTGGGCAAAT--T---TTGAC--GTC--GA-TTTTTTTTCA--CGA-TT-GTC--C-ACGG-----AT-TTCA------AT-CACCGGAATC--------T------TATTATTTCCG-CTT-GGG-TTTT--T--GCTTTT-C-CG-TT----GGNTTTTATTGCT-TTTCTGT----TCATNTTTTTTTTTT-------CAT--TTGG-T-CATCTTTG-TAGGACTACATGTAATT-CTGTCCGATTTCCCTCTGCC-TCGACCCCTTC-----CAAGCTTTNTTCCC------ACC-TCTC-----G-----AC---CA-GT---CAGT---G----AAAAACT--AAATT-AAAA-ACGAA-G-GT--ATT--CGA-AA--AGAAT-T-G-TT-AAAAA---AT-C---G-CAACGCAT-GCGCT-T--TTTAT-T--CGTTTTAATTCTAACT-GAT-A---C--TCGCAAGAA-TTCG-TTAGACTTGCAAC-GATTAT-CGCAAG-CATTCG--T-AA--GGTCGTA--AAGG-CATTTGTAATC--AT-TC-AGAAAT--TAA---TTGT-AAGA-AA--TTCTT-TATA-T-------TTATCGC-A-AA---AAAATCATAAGGT-T-C----GTATG-GA-ATT---CA-T-AA---AGTC-GC-AAA-C-AC--TCGT-AAAG---ATT--CGTA---AGAC-CAG-TTG-T-AA-ACGA-TC--TTAAG-CCTTGAT-GGA---T-TTTCAATA--TTTTA-AAA-CCCC----AATC-TTGTT--ATT-TCT-G-ACG-AA-TTTTCT-GCGAA--C-GCC-AAAA--TTT--TCAT--TCGCA-AG-G---ATATTCGGC-ATAGT-GT-GAGAGCA
Reference ( family-2029 ) : TGCTCTCCACACTA-TGCCGAATATCCTTGCGA--TTGACATA-A-GA-ATGT-CATTCGC-CGCTCATTTC-G--CA-ATGAT--TCGT-N----AGCT--AT--CGCTA-A----CA------T-----TCGTAC---TC-A-CTCTCAA-G---TAA-TC-GT-G-C-CGTTCG-T-GA-----GTT----TTAA---C-GAA-TATTAG----AAACATGCT-CC---TA--TA-TT-CG--C-AAGGA-A-TTTG-AAATTTCTCAA-TCCAATCGTA-A-ATAAT-T-CA-T-A-TGCA--TTNTTTAAGCCAAT-C-GTA-T--GATGGCAAGC-CA-TTTGCATTGA-TCG-TAATACA-TTCC-TTTTATAACTCGTCAC--A-CTCGCAAACGCTCGTAAG--GATT-CG-TG-AAAGGTTTGGGCAAAT--T---TTGAC--GTC--GA-TTTTTTTTCA--CGA-TT-GTC--C-ACGG-----AT-TTCA------AT-CACCGGAAT---------T------TATTATTTCCG-CTT-GGG-TTTT--T--GCTTTT-C-CG-TT----GGNTTTTATTGCT-TTTCTGT----TCATNTTTTTTTTTT-------CAT--TTGG-T-CATCTTTG-TAGGACTACATGTAATT-CTGTCCGATTTCCCTCTGCC-TCGACCCCTTC-----CAAGCTTTNTTCCC------ACC-TCTC-----G-----AC---CA-GT---CAGT---G----AAAAACT--AAATT-AAAA-ACGAA-G-GT--ATT--CGA-AA--AGAAT-T-G-TT-AAAAA---AT-C---G-CAACGCAT-GCGCT-T--TTTAT-T--CGTTTTAATTCTAACT-GAT-A---C--TCGCAAGAA-TTCG-TTAGACTTGCAAC-GATTAT-CGCAAG-CATTCG--T-AA--GGTCGTA--AAGG-CATTTGTAATC--AT-TC-AGAAAT--TAA---TTGT-AAGA-AA--TTCTT-TATA-T-------TTATTGC-A-AA---AAAATCATAGG---T-C----GTA---GA-ATT---CA-T-AA---AGTC-GC-AAA-C-AC--TCGT-AAAG---ATT--CGTA---AGAC-CAG-TTG-T-AA-ACGA-TC--TTAAG-CCTTGAT-GGA---T-TTTCAATA--TTTTA-AAA-CCCC----AATC-TTGTT--ATT-TCT-G-ACG-AA-TTTTCT-GCGAA--C-GCC-AAAA--TTT--TCAT--TCGCA-AG-G---ATATTCGGC-ATAGT-GT-GAGAGCA
gi|1 : CTCTACACACTA-GGCCGCATAC---TGCGAATTTGAGA-A-A-GATCTGT-CATTCGC-GG----TTTCTG--CT-ATGATC-TCAA-A----TACTGGAT---GTTA-G----TAGGTGGCT-----TCGTACCTCTC-A-CTAGTAA-G---TAA-TCCGT-G-G-CGTT-G-T-GGTTATTATT----ATAA---C-GAAATATTAG----AAACATGCT-CC---TA--CA-TTGCG--CTAAGGA-A-ATTGCAAAATGCTCAAATCCAATCGTATATATAAT-TTCA-TTA-TGCAA-TTTTTTAAGCCAATGC-GTA-TT-GATGGCAAGAGCA-TTTGCATTGGGTCGGTAATA-A-TTA--TTATATAGTTCGTCACGAA-CTCGCAA-CATTCGTAAG--GATTGCG-TG-AAAGGTT--GGCAAAT--TGTTTTGAT--GTC--AA-ATTTTT------CG--TC-GTC--CGACGG-----GC-TTTA------AT-CACCAGAATCCGGAATT-T------TATTATTTC-G-CTTCGGG-CTTTATT--GCTTTGAC-TG-TTTCATGGTTTTTATTATT-CTTCTTTATCTTTATTTTTTTTTTTTTTTTTTACAT--TTGGGT-CAA--TTG-TAG------ATG-AGCT-C----CGATTTCTC-----C-TC-ACCC----------AAGTTTTTCGCTC------ACG-TC-------------AG---CA--T---AAGT---G----TTG--TT--CAATT-AACA--TGAA-G-TT--GT---CGA-AA---GAAT-T---TT-AAAAAT--GT-C---G---ACGCTA-GCCTC-C--TTTATATGGCGTTTT---TCTAATT-GATCA---C--TCG-AAGAA-TTCG-TTAGACT-GCAAC-AATC-T-CGCA-G-CATTCG--TGAA--GGTCGTG--AAG--CATGTGTA--T--AT-TC-ACAAAT--TAA---TTGT-AAGTTAA--TCTTT-TATA-T-------TTATCGC-A-AA---AAA-TCATAAGGT-T-C----GTGAG-GA-ATT---CT-T-AA---AGTC-GC-AAAAC-AC--TCGT-AAAG---ATT--CGTA---AGA--CAGCTTG-T--A-ACGA-TCGATTA----CTTGAT-GAT---C-TTTCAATA--TTTTA-AAA--CTC----AATT-CTATT--ATT---T-GCACG-AA-TTTCGT-GCGAA--A-GCC-AAAAGGTTT--TTATCATAG-A-AG-GAAAATATTCGACTATAGT-GT-GA
gi|10 : TGCTCTC-ACACTA-TGCCGAATATCCTTGCGA--TTGACATA-A-GA-ATGT-CATTCGC-CGCTCATT-C-G--CA-ATGAT---CGT-AT---AGCT--AT--CGCTAGA----CA------T-----TCGTAC---TC-A-CTCTCAA-G---TAA-TC-GTCG-C-CGTTCG-T-GT-----GTT----TTAA---C-GAA-TATTAG----AAACATGCT-CC---TAA-TA-TT-CG--C-AAGGA-A-TT-G-AAATT-CTCAA-TCCAATCGTA-A-ATAAT-T-CA-T-A-TGCA--TTC-TTAAGCCAAT-C-GTATT--GATGGCAAGC-CA-TTTGCATTGA-TCG-TAATACA-TTCT-TTTTAT-ACTCGTCACA-A-CTCGCAAACACTCGTAAG--GATT-CA-CG--AAGGTTTGGACAAAT--T---TTGAC--GTC--AA-TTTTa
gi|11 : tacTACTGTCCACACTA-TGCCGAATATCCTTCCGA---TGACATAGA-AG-ATGT-CATTCGA-CGCTCA-TTC-G--CA-ATGA----CGTAT----AAAT--AT--CGCTA-A----CA------T-----TCGTAC---TC-A-CTCTCAA-G---TAGTTC-GT-T-G-CGTTCGTT-GA-----TCT----TTAA---C--AC-TGATAGT---AAATAT-CT-CCA--CG--TA-TT-CG-----AGGA-A--TTG-GAATTGCTCAA-T--AATCGTA-A-ATAAT-T-CA-T-A-TGCA--TTATT-------AT-C-GTA-CA-GATGGC--GC-CA-TTTGCAC--A-TCG-TAATA-A-TTCC-TTTTATAACTCGTCACA-A-CTCGC-AACGCTC-TAGG--AATT--G-TGAAAAGGTTTGGGCAAAT--T---TTGAC--GTC--GA--ATTATTTCA--CGATTT-GTC--C-
gi|12 : aTACTGTCCACACTA-TGCCGAATATCCTTCCGA--T-GACATA-AAGA-ATATTCATTCGC-CGCTCATT-C-G--CACATGA----CGT-AT---AAAT--AT---GCTAGA----CA------T-----TCGTAC---TC-A-CTCTCAATG---TA--TC-GT-G-C--GTTCG-T-GA-----TCT----TTAA---C---A-TAT-AG----AATTAT-CT-CCACGTA---A-TT-CG----AAGGA-A-TTGG-AAATT-CTCAA-TC-AAT-GTA-A-ATAAT-T-CA-T-A-TGCA--TTATT-------AT-C-GTA-CAGGATGGCAG---CA-TT-GCACTGA-TCG-TAATACAATTCCATTTTATA-CTCG-CAC--A-CTCGCAAACGCTC-TA-G--GATT-CG-TG-AAAAGGTTGGGCAAAT--T---TTGAC--GTC--GA-TATTATTTCA--ACA-TT-GTC--C-
gi|13 : aTTT-C-CT-TT----GAGTTTTATTGCT-TTTCTGG----TCATTTTTTTTTCTC-------CAT--TTG--------TTGG-TAGGACTACATGTAATT-CTGTTCGATTTCCCTCTGCC-TCAAACCCTTC-----CAA-CTTTGTTTCC------ACC-TCTC-----G-----ACATACATGT---CAGTC--A----AAAAACT--AAATT-AAAA-ATGAA-T-GT--ATT--CGA-GA--AGAATGT-G-TT-AAAAA---TT-C---A-CAACGCAT-GCGC--T--TTTAT-T--CATTTT-ATTCTAAAT-GAC-A---C--TCGCAAGAATTTCGTTTAGACTCGCATC-GATTAT-CGCAAG-CA-TCG--T-AAGCGGTGGTA--AA-G-CAGTTGTA
gi|14 : ttagtaAAT--TAA---TTGT-AAGA-AA--TTCTT-TATA-TTATCTGATTATTGC---AA---AAAATCACAAGGT-T-C----GTATG-GA-ATTTCATA-T-AA---AGTC-GC-AAA-C-AC--ACGTGAAAGATAATT--GGTAAAGAAACACAG-TTGAT-AATACGA-TC--TTAAGCCCTTGAT-TGA---T-TTTCAATG--TTTAATAAA-CCCT----AATCATTGTTACATTGTCTGG-ACGAAA-TTTTCT-GCGAACCC-GCCAAAAA--TTT--TCATG-TCGCA-AG-G---ATATTCGGC-ATAGTAGT-GAGAt
gi|15 : --AAATT-AAAA--CGAA-G-GT--ATTT-CAG-AA--AGAAT-T-G-TT-AAAAA---AT-C---G-CAACGCA---CGTT-T--TATCT-T--CGTTTTA--TCT-ACTGGAT-A---TCGTCACGATAA-TTC--TTA-ACTTGCAAC-AA-TATAAGCAAACCATCAT--T-AG--GGTC-TA--AAGGCCATTTGT-ATC--ATATC-AGAAAT--TAA---TTGT-AAGA-AA--TCTTT-GATA---------TTATTGC-A-AA---AAAATCACAAGGT-T-C----GTATG-GA-ATT---TA-TCAA---AGTC-GCAAAA-C-AC--TCGT-AAAG---AT
gi|16 : aATC--AT-TC-GCAAGT--TAA---TTGT-AAGA-AA--TTCTTGTATA-T-------T-ATTGC-A-AA---AAAATCATAAGGT-T-C----GTATG-GA-ATT---CA-TTAA---ACTC-GC-AAA-CCAC--TCGT-AAAG---ATT--CGTA---AGAC--AA-TCG-T-AA-ACGA-TC--TTAAG-CCTTGGT-G-A---T-TTTTGATA--TTTTA-AAC-ACCC----AATC-TTATT--ATT-TCT-G-ACA-AA-TTTTCT-GCGAA--C-GCT-AACAT-TTT--TCAT--TCGCA-AG-G---ATATTCGGC-ACAGT-GT-GAGAGC
gi|17 : CAAGAA-TTCG-TTAGACTTGAAAC-AATTAC-CGCAAT-CATTCG--T-AAG-GGTCGTA--AAGG-CATTTGT-ATC--AG-TC-AGAAAT--TAA---TTGT-AAGA-CA--TT-TT-TATA-T-------CTATTGCAA-AA---AAAATCATAAGGT-T-C----GTATG-GA-ATT---CATT-AA---AGTC-GCAAAA-C-AC--TCGT-AAAG---ATT--CGTA---AGA--CAA-TTG-T-AA-ACGA-TC--ATAAG-C----AA-GGA---T-ATTC
gi|17 : --TCAT--AAGCA-AG-G---ATATTCGGC-ATAGT-GT-GAAAGCAggcatagtgtgaaagca
gi|18 : caagaattcgttagacttgaaacaattaccgcaatcattcgtaagggtcgtaaaggcatttgtatcagtcagaaattaattgtaagacatttttatatctattgcaaaaaaaatcataaggttcgtatggaattcattaaagtcgcaaaacactcgtaaagattcgtaagacaattgtaaacga-A-AA---AAAATCATAAG---TTC----GTAT--GA-AT----CG-T-TA---ACTC-G--AAA-C-AC---CG---AAA---ATT--CATA---AGAC--AG-TTG-T-AA-ACTA-TC--TTAAG-CCTTGGT---A---T-TTTT-ATA--TTTTA-AAA--CCC----AATC-TTA-T--ATT-TCTGG-ACA-AA-TTTTCT-GCGAC--CAGCT-AACA--TTT--TCAT--
gi|19 : aTGCTCTC-ACACTA-TGCCTAATATCCTTGTGA--TTGACATA-A-GA-ATGT-CATTTCC-CGTTCA-GTC-G--CA-ATGATC-TTAT------AGGT--AT--TGCTA-GT---TA------T-----TCGTAC---TC-A-ATCTTAA-G---TAA-TC-GT-G-CTCGTTTG-T-GA-----GTT----TTAA---C-GAA-TACTAG----AAACATGCcaca
gi|2 : tacTGCTCTCCACACTAGTGCTGAATATCCTT-CGA--TTGACATA-A-GA-ATGC-CATTCGC-CGCTCATTTC-G--CA-ACGAT--TCGT-T----AGCT--AT--CGCTA-A----CA------T-----TCGTAC---TC-A-CTC-CAA-G---CAA-TC-GTCG-C-CGTTCA-T-GA-----GTT----TTAA-----GAA-TATTA-----AAACATGCTGCC---TA--TA-TT-CG--CAAAGGA-ATTTTG-AAATTTCTCAA-T-CAATCGTA-A-ATAA--T-CATT-A-TGCA--TTCTTTAAGCCAAT-C-GTA-T--GATGGCAAGC-CA-TTTGCATTGA-TCG-TAATACA-TTCC-TTTTATTACTCGTCAC--A-CT-GCAAACACTCGTAAG--GATT-CGTTG-AAAGGTTTGGGCAAAT--T---TTGAC--GTC--AA-TTTTTTTCCA--CGA-TT-GTC--C-ACGG-----AT-TTCA------AT-CATCGGAAT---------T------TATTATTTCCG-CTT-GGGTTTTT--T--GCTTTT-C-TG-TT----GGTTTTTGTTGTTGTTTTTGT----TGTTGTTTTTTTTTT-------CAT--TTGG-T-CATCTTTG-TAGGAATAAA-GTAATT-CTGT-CGATTT-CCTCTGCC-TTGACCCCTTCGGCTTCAAGCTTTTTTCCC------ACC-TCT-------------C---CA-G----CAGT---G----AAAAACT--AAATT-AAAA-ACGAA-T-GT--ATT--CG--AT--AGATT-T-GTTT-AAAAA---ATAC---G-CAACG-AT-TTGCTGT--TTTAT-T--CGTTTTAATTCTAACT-GAT-AGTCC--TCGCAAGAA-TTCG-TTAAACTTGCGACTGATTAT-CACAAG-CATTCA--T-AA--GGTCGTA--AAGG-TATTTGTAATC--AT-TC-AGAAAT--TAA---TTGT-AAGA-AAGTTTCTT-TATAGT-------TTATTGC-ATAA---AAAA-------------------A---AA-ATC---C-----A---AGTC-GC-AAA-C-AC--TCGT-AAAG---ATT--GGTA---AGAC-CAG-TTG-T-AA-ACGAGTCT-TTATG-CCTTGATGGGA---T-TTTCAATA--TTTAG-AAACCCCC----AATC-TTGTT--ATT-TCT-G-ACG-AA-TTTTCT-GTGAA--C-GGC-CAAA--TTT--TCAT--TCGCA-AG-G---ATATTCGGC-ATAGT-GT-GAGAGCA
gi|20 : GT-AAAG---ATT--CGTA---AGAC--AG-TTG-T-AA-ACGA-TC--TTAAG-CCTTGAT-G-A---T-TATCAATA--TTTTA-AAA-CCAC----AATC-TTATT--ATT-TCT-G-ACG-AA-TTTTCT-GCGAA--C-GCC-AAAAT-TTT--TCAT--TCGCA-AG-G---ATATTCGGC-ATAGT-GT-GAGAG
gi|21 : T---CA-T-AA---AGTC-GC-AAA-C-AC--TCGT-AAAG---GATAATGTA---AGAC-AAG-TTG-T-AA-ACGA-TC--TTAAG-CCTTGAT-GAAAGCT-TTTCAATACTCTTTA-AAA-CCCCAATAAATC-TTGTT--ATT-TCT-G-ACG-AA-TTTTCT-g
gi|23 : a-AAAG---ATT--CGTA---AGAC--AG-TTG-T-AA-ACGA-TC--GTAAG-CATGGCT--GA---T-TTTCAATA--TTTTaat
gi|23 : A-TTTTCT-GCGAA--C-GTC-AAAAC-TTT--TCAT--TCGCA-AG-G---ATATTCGGC-ATAGT-GT-GAGAGCActgcgaacgtcaaaacttttcattcgcaaggatattcggcatagtgtgagagcagc
gi|24 : aaagattcgtaagacagttgtaaacgatcgtaagcatggctgattttcaatT-TCT-G-ACA-AAATTTTCT-ACGAA--A-GCC-AAAAT-TTT--TCAT--TCGCAGAG-G---ATATTC-GC-ATAGT-GTGGAGAGgc
gi|26 : T-CG-TG-AAAGGTTTGGGCAAAT--T---TTGAC--GTC--GA-TTTATTTTCA--CGA-TT-GTC--
gi|28 : -G---ATATTCGGC-ATAGT-GT-GAGAGCA
gi|3 : A-G---TAA-TC-GT-GGT-CGTTGG-T-GA-----GTT----TTAA---C-GAA-TATTAA----AAATATGCT-CA---TA--AAATT-CG--C-GAGAA-A-TT-G-AAATGT-TCAA-TCCAATTGTA-A-ATAAT-T-CA-T-A-T--------------------------T--GATGGCAAGC-CA-TTTGCATTGA-TTT-CAATACA-TTCC-TTATATA-------------CTCGAACACACTCGTAAGAAGA----G-TG-AAAG-TTGGGGCAAATGTT---TTGACATGTC--AAATTTTTTTTCA--CGA-TT-GTC--C-ACGG-----AT-TTCA------AT-CACCGGAATCATCGGAATT------TATTATTTCTG-CTT---------------------------T----GGATTTTATTGCT-TTTCTGT----TCATATTTT-------------CAT--TTGG-T-CATCTTTGGTAGGACTACATGTAATT-CTGTCCGATCTCCCTCTGTC-CGGACCCCTTC-----CA-GCGTTGTTCCC------ACC-TCAC-----GGT---AT---GA-GTTGTCAGT---TC---AAAAACT--AAATT-CAAA-ATGAA-G-GT--ATT--CGA-AA--ATAAT-T-G-TTTAAAAA---AT-C---C-CAACGCAT-GCGCT-T--TT-AT-T--TGTTTTA-TTCTAACT-GAC-A---C--TCGTAAGGA-TTCG-TTAGATTCGCAAC-GATTAT-CGCAAG-CATTCG--T-A--------TA----------TTATTGCC--CC-CCAAAAAATCATAAGGTTCGT-ATGG-AA--TTCGT-TAAA-C----------TCGC-A-A----------ATAAC---T-C----GTA---AAGATT---CA-T-AAGACAGTT-GT-AAA-gcatagg
gi|4 : -TT-CG--C-AAAGA-A-TTTA-AA--TTCTCAA-CCCAATCCTA-A-ATGAT-T-CA-T-A-TGCA--TTG-TTAAGGCAAT-T-GTA-TG-GATGATAAAC-CA-TGTGCATTGA-TGG-TAAT
gi|4 : aaacTT-C-CGCTT----GGGTTTTATTGAT-ATTATGT----TCATTTTATTTTGGT-------CATCTTTGG-TACAT----G-CAGGGCTACATGTAATT-CTGTCCGGTTTCCCTCTGCC-TCGAACTATTC-----CA-GATTTGTTTCC------TCC-CTTC-----GGTATGAT---CT-TT---TAGT---TC---AAAAACT--AAATT-CAAA-ATGAA-G-GT--ATT--CGA-GA--AGAAT-T-C-TT-AAGAC---AT-T---G-CAATGCAT-ATGC--T--TTTAT-T--CGTTTT-ATTCTGA-----------------CAAAAA-TTCG-TTAGACTTGCAAC-GATTAT-CGCAAG-CATTCT--TAAA--GATCGTA--AAAG-CACTTGT-------T-T------------A---TTGT-AAGA-AA--TTCTTGTATA-gataattcgcaaggttgttttatggtgatgttttttggtgttgatggagagtgtggcggtatagcaattggtgtgatataattgttagatatattattggaaccatcgaaagtattattccgcttgggttttattgatattatgttcattttattttggtcatctttggtacatgcagggctacatgtaattctgtccggtttccctctgcctcgaactattccagatttgtttcctcccttcggtatgatcttttagttcaaaaactaaattcaaaatgaaggtattcgagaagaattcttaagacattgcaatgcatatgcttttattcgttttattctgacaaaaattcgttagacttgcaacgattatcgcaagcattcttaaagatcgtaaaagcacttgtttattgtaagaaattcttgtata
gi|5 : aaacttcgcaaagaatttaaattctcaacccaatcctaaatgattcatatgcattgttaaggcaattgtatggatgataaaccatgtgcattgatggtaatgataattcgcaaggttgttttatggtgatgttttttggtgttgatggagagtgtggcggtatagcaattggtgtgatataattgttagatatattattggaaccatcgaaagtattaTGCTCTC-ACACTA-TGCCCAATATCCT-GCGA--TTGACGAA-A-GATCTGT-CATTCCG-CGTTT-CCTC-GACTA-ATGAT---CGT-A----AA-T--ATA-CGCTT-A----GA------TATGGCTTGTAC---TCTA-CTATGAA-G---TAA-TC-GT-G-C-CGTT-G-T-GA-----GTTATTATTAA---C-GAA-TATTAG----AAACATGCT-CC---TA--AAATT-CG--C-AAGGA-A-TT-G-AAATG-CTCAA-TCCAATCGTA-A-ATAAT-T-CA-TTA-TGCA--TT-TTTAAGCCAAT-CCGTA-TT-GATG-CAAGC--A-TTTGCATTGG-TCG-TAATA-A-TTCA-TAT-ATAGTTCGTCAC--AATTCGCAAACATTCGTAAG--GATT-CG-T--AAAGGTT--GGCAATT--T---TTGAT--GTC--AA-ATTTTTT-CAGTCGG-T--GTC--C-ACGG-----CT-TTCA------AT-CACCAGAAT-------------------------CA-C---GGA-ATTT--T--ATTATT-CTCGCTT----GGCTTTTATTGCT-TTACTGT----TCATGTTTTTTTTTT-------C
gi|6 : atacTCCGCACGCTCACT-C-G--CAGATGATGGTTAT-GGCATAGCT--ATACCGCTT-AGACTCA------T-----TCGTAC---TC-ATCTCTCAA-GTATTAG-TC-GTGG-C-CGTTCG-TCGA-----GTT----TAAAGGGCGGAA-TATTAGATCTAGACATGCG-CC---TAATTA-TT-TAGCC-AAGGACA-TTTG-CA--TTCTCAT-TCAAATCTCG-A-ATAATAT-CA-T-ATTGCATGTCCTCTAATTCA------------GAT------C-CATTTTGCTTTGA-TCG----TATG-TTTC-TTTttctt
gi|6 : TCGTAAT--GATT--G-TG-AA----TT-------T--T---TT-AC--GTTCAAA-TTTTTTTTCA--CGA-TTTGTCGCT-ACGATTTTTATATTCACTGGATATGCATCGGAAT---------TGGGGGGTATCATTTCCGTCTT-GGG-TTTT--TATGCTTTT-C-TG-TT----Gatctacccaatatgataagataactttgtatttatatgtggctgacgatctttttcgtaatgattgtgaattttttacgttcaaattttttttcacgatttgtcgctacgatttttatattcactggatatgcatcggaattggggggtatcatttccgtcttgggtttttatgcttttctgttgccc
gi|7 : tccgcacgctcactcgcagatgatggttatggcatagctataccgcttagactcattcgtactcatctctcaagtattagtcgtggccgttcgtcgagtttaaagggcggaatattagatctagacatgcgcctaattatttagccaaggacatttgcattctcattcaaatctcgaataatatcatattgcatgtcctctaattcagatccattttgctttgatcgtatgtttctttatctacccaatatgataagataactttgtatttatatgtggctgacgatcttttTGTAATTTCTATCCGATTTCTCTCTGCCCTCGACCCCTTC-----CAGGCTCCTCCCCCCCCCCCACCCTCCCAGCATG-----AC---TT-GT---TAATTTAGTTCCAAAAACTTCAAATCCAAAACACGAC-GCGT--AATGGCGA-AACAAGCAT-T-G-TT-ACAAACACAC-CTCCG-CAACGCATTGC-CT-TCCTTTAT-T--CATTTTA-TTCTAATT-GAT-A---C--TCACAAGAA-TTCG-TTAGACTTGCAAC-AATTAT-CGCAAG-CATCCG--T-AA--AGTCGTGTCAAAG-CATTTGT-ATC--AT-TC-AGAAAT--AAA---TCGTAAAGA-AA--TTATT-TATA----------TATGGC-A-AAAACAAAATCATAAGCGTT-CGTGTGTG---GA-ATT---CATT-AA---AGTC-GC-AAA---GC-----T-AAAG---AGT--CGTA---AGA--CAG-TTG-T-AACACGA-Tccc
gi|8 : T---G----AAAAA-T--AAATT-AAAA--CGAA-G-GT--ATTT-CGA-AA--AGAAT-TTG-TT-AAAAA---AT-----G-CAACGCAC-GTG------TTTAT-T--CGTTTTA-TTCTAACT-GAT-A---C--ACGCCAAGA-TTCG-TTAGACTTGCAAC-AAGTATAAGCAAC-CA-TCAATT-AG--GGTC-T---AAGG-CATTTGT-ATCATAT-TC-AG-AAT--TAA---TTGC-TAAA-AA--TTCTT-TATA---------TTATTGC-A-AA---AAAATCACAAG---G-T----GTATAGGA-ATT---TA-TCAA---AGTCTGC-AAA---ACCATCGT--AAG---ATTG-CGAA---A----CAG-TTG-TAAA-ACGA-TC--TTAAG-CCTTGAT--GA---TGTTTCAATA--TTTTA-AAA-CACC-----ATC-TTGTT--ATA-TCT-G-ACG-AA-TTTTCT-GCGAA--C-GCC---AA--TTTA-TCAT--TCGAA-CGAG---ATATTC-GC-ATAGtct
gi|9 : AATTCAAAA-ACGAAAG-GTTGATT--CGACAA--AGAAT-T-G-TT-AAAAA----T-C---GTCGACGC-T-ATGCT-C--TTTAG----CGTTTTTATTCTAATT-GAT-A---C--TCGCAAGA--TTCG-TTAGATCTGCAAC-AATCAT-CGCAAG-CATTCG--T-G---GGTCGTG--AAG--CATGTGTA--T--AT-TC-AGAAAT--TAA---TT-T-AAGA-AA--TTCTT-TATA-T-------T-ATCGC-A-AA---AAAATCATAAG---TTC----GTATG-GA-ATT---CA-TTAA---AGTC-GC-AAAAC-AC--TCGT-AAAG---ATT--CGTA---AGA--CAGCTTG-T-AA-ACGA-TC--TTA---CCTTGAT--GA---T-TTTCAATA--TTTTA-AAA---CC----AAT--TTATT--A-T-TCT-G-CCG-AA-TTTTCTGGCGAA--C-GCC-AAAAGGTTTTATCAT--TCGCA-AG-G---ATATTCGAC-ATAGT-GT-GAG
3 sequences could not be aligned to this reference sequence:
Unaligned ( gi|22 ): AGTTATAATCTTAAATTGTTATTGGACACGAGATAGCAAATAGCATGCTTTATTTTAAAAAGACGTCATTAAATGCAGGTTGAACTATAATAGCGAAAATACCAACTGTATGTACATATTAA
Unaligned ( gi|25 ): TTANNNNNNNNNNNNNNNNNNNNNNNNNAGAAAAGAGTATATATCTTGGTGTCATTA
Unaligned ( gi|27 ): GCNATGACATGCAGTTCTTGGATAATTTCTGT
Alignments
lowQualScore : 1 1 1111 1 333333333333333 111 22222222222222222222 1 11111 1111 111 111 1111 1 1 11 2222222222222222222222 1 11 1111 22222222 222222 22222222 777777777777777 6666666666666666666666666 1111 1111 2222222 11 11111111 11111 111111 88888888888888888888888888888888888888 11 11 1111111111 11111 22 11111 22 22222222222 111 1 222 11 11 22
lowQualScore : 1 5 4 77 1 5 5 1 5 5 0 2222 5 66 0 777777777777777 66 666 66666666666666666666 888 5 5 0 4 777 4 4 3 666 5 4 4 11111 9999 888888 4 3333 1 5 333 777 8 4 6666 4 4 0 4 1 2 4 22 4 4 4 4 4 8 4 00 5555555555555555555555 0 0 4 4 4 4 0 5 66 11 1 9999 1 2 66 88 4 4 55 66 777 66 666 66 2 66 5 5 66 5 00000000 333333 8 99999999 777777777777777 3 8 0 1111111111111111111111111 2222 1 6 4444 1 1 1111111 11 99999999 0 8 6 5 6 1 2 66666 9 1 999999 6 44444444444444444444444444444444444444 66 8 11 4 4 66 55 4 66 4 777 4 5555555555 4 55 33333 7777 55 3 4 4 888888 4 4 4 4 4 4 55 33333 2 55 33 4 22 99 4 55 666 3 3 55 7 66666666666 2 777 666 55 55 3 555 333 555 3 0 6 777 3 555 77 555 000 6 3 3 6 3 88 2 3 88 666 3 55 4 33 9999 4 66 4 8 4 4 3 3 55 4 4 77 88 88 4 3 666 3 4 4
lowQualScore : . . . .. . . . . . . . .... . .. . ............... .. ... .................... ... . . . . ... . . . ... . . . ..... .... ...... . .... . . ... ... . . .... . . . . . . . .. . . . . . . . .. ...................... . . . . . . . . .. .. . .... . . .. .. . . .. .. ... .. ... .. . .. . . .. . ........ ...... . ........ ............... . . . ......................... .... . . .... . . ....... .. ........ . . . . . . . ..... . . ...... . ...................................... .. . .. . . .. .. . .. . ... . .......... . .. ..... .... .. . . . ...... . . . . . . .. ..... . .. .. . .. .. . .. ... . . .. . ........... . ... ... .. .. . ... ... ... . . . ... . ... .. ... ... . . . . . .. . . .. ... . .. . .. .... . .. . . . . . . .. . . .. .. .. . . ... . . .
lowQualScore : 4 7 3 99 7 7 7 4 7 0 2 4444 0 99 0 444444444444444 99 444 44444444444444444444 888 0 0 1 4 888 4 4 3 222 7 4 4 11111 4444 999999 4 9999 1 0 888 444 9 4 1111 4 4 0 4 9 7 4 22 4 4 4 4 4 9 4 66 9999999999999999999999 1 1 4 4 4 4 8 0 44 00 4 4444 4 5 99 33 4 4 77 11 888 11 888 77 0 99 0 0 99 7 88888888 000000 0 00000000 222222222222222 2 0 8 0000000000000000000000000 1111 0 7 2222 0 5 7777777 00 22222222 6 0 7 2 7 0 5 77777 8 0 222222 7 99999999999999999999999999999999999999 99 9 88 4 4 11 00 4 11 4 222 4 4444444444 4 44 88888 0000 77 7 4 4 444444 0 0 0 0 0 0 55 88888 5 55 22 0 88 55 0 00 444 6 6 00 3 88888888888 1 222 444 00 00 6 888 000 888 3 0 7 333 1 444 99 888 888 7 3 3 7 3 66 3 6 66 444 6 55 4 99 4444 4 11 0 0 0 0 6 6 55 0 0 00 66 66 0 6 444 6 0 0
consensus : TGCTCTCCACACTA-TGCCGAATATCCTTGCGA--TTGACATA-A-GA-ATGT-CATTCGC-CGCTCATTTC-G--CA-ATGAT-----TCGTATAGCT--AT--CGCTA-A----CA------T-----TCGTAC---TC-A-CTCTCAA-G---TAA-TC-GT-G-C-CGTTCG-T-GA-----GTT----TTAA---C-GAA-TATTAG----AAACATGCT-CC---TA--TA-TT-CG--C-AAGGA-A-TTTG-AAATTTCTCAA-TCCAATCGTA-A-ATAAT-T-CA-T-A-TGCA--TTNTTTAAGCCAAT-C-GTA-T--GATGGCAAGC-CA-TTTGCATTGA-TCG-TAATACA-TTCC-TTTTATAACTCGTCAC--A-CTCGCAAACGCTCGTAAG--GATT-CG-TG-AAAGGTTTGGGCAAAT--T---TTGAC--GTC--GA-TTTTTTTTCA--CGA-TT-GTC--C-ACGG-----AT-TTCA------AT-CAC--------CGGAATC--------T-----TATTATTTCCG-CTT-GGG-TTTT--T--GCTTTT-CCG-TT----GGNTTTTATTGCT-TTTCTGT----TCATNTTTTTTTTTT-------CAT--TTGG-T-CATCTTTG-TAGGACTACATGTAATT-CTGTCCGATTTCCCTCTGCC-TCGACCCCTTC-----CAAGCTTTNTTCCC------ACC-TCTC-----G-----AC---CA-GT---CAGT---G----AAAAACT--AAATT-AAAA-ACGAA-G-GT--ATT--CGA-AA--AGAAT-T-G-TT-AAAAA---AT-C---G-CAACGCAT-GCGCT-T--TTTAT-T--CGTTTTAATTCTAACTG-AT-A---C--TCGCAAGAA-TTCG-TTAGACTTGCAAC-GAT-TATC-GCAAGC-ATTCG--T-AA--GGTCGTA--AAGGC-ATTTGTAATCAT--TC-AGAAAT--TAA---TTGT-AAG-AAA--TTCTT-TATA-T-------TTATCGC-A-AA---AAAATCATAAG-GTTC--GTAT-GGAATT---CA-T-AA---AGTC-GC-AAA-CAC--TCGT-AAAG---ATT--CGTA---AGAC-CAG-TTG-T-AA-ACGA-TC--TTAAG-CCTTGAT-GGA---T-TTTCAATA--TTTTA-AAA-CCCC----AATC-TTGTT--ATT-TCT-G-ACG-AA-TTTTCT-GCGAA--C-GCC-AAAA--TTT--TCAT--TCGCA-AG-G---ATATTCGGC-ATAGT-GT-GAGAGCA
Reference ( family-2029 ) : TGCTCTCCACACTA-TGCCGAATATCCTTGCGA--TTGACATA-A-GA-ATGT-CATTCGC-CGCTCATTTC-G--CA-ATGAT-----TCGTA-AGCT--AT--CGCTA-A----CA------T-----TCGTAC---TC-A-CTCTCAA-G---TAA-TC-GT-G-C-CGTTCG-T-GA-----GTT----TTAA---C-GAA-TATTAG----AAACATGCT-CC---TA--TA-TT-CG--C-AAGGA-A-TTTG-AAATTTCTCAA-TCCAATCGTA-A-ATAAT-T-CA-T-A-TGCA--TTNTTTAAGCCAAT-C-GTA-T--GATGGCAAGC-CA-TTTGCATTGA-TCG-TAATACA-TTCC-TTTTATAACTCGTCAC--A-CTCGCAAACGCTCGTAAG--GATT-CG-TG-AAAGGTTTGGGCAAAT--T---TTGAC--GTC--GA-TTTTTTTTCA--CGA-TT-GTC--C-ACGG-----AT-TTCA------AT-CAC--------CGGAATC--------T-----TATTATTTCCG-CTT-GGG-TTTT--T--GCTTTT-CCG-TT----GGNTTTTATTGCT-TTTCTGT----TCATNTTTTTTTTTT-------CAT--TTGG-T-CATCTTTG-TAGGACTACATGTAATT-CTGTCCGATTTCCCTCTGCC-TCGACCCCTTC-----CAAGCTTTNTTCCC------ACC-TCTC-----G-----AC---CA-GT---CAGT---G----AAAAACT--AAATT-AAAA-ACGAA-G-GT--ATT--CGA-AA--AGAAT-T-G-TT-AAAAA---AT-C---G-CAACGCAT-GCGCT-T--TTTAT-T--CGTTTTAATTCTAACTG-AT-A---C--TCGCAAGAA-TTCG-TTAGACTTGCAAC-GAT-TATC-GCAAGC-ATTCG--T-AA--GGTCGTA--AAGGC-ATTTGTAATCAT--TC-AGAAAT--TAA---TTGT-AAG-AAA--TTCTT-TATA-T-------TTATCGC-A-AA---AAAATCATAAG-GTTC--GTAT-GGAATT---CA-T-AA---AGTC-GC-AAA-CAC--TCGT-AAAG---ATT--CGTA---AGAC-CAG-TTG-T-AA-ACGA-TC--TTAAG-CCTTGAT-GGA---T-TTTCAATA--TTTTA-AAA-CCCC----AATC-TTGTT--ATT-TCT-G-ACG-AA-TTTTCT-GCGAA--C-GCC-AAAA--TTT--TCAT--TCGCA-AG-G---ATATTCGGC-ATAGT-GT-GAGAGCA
gi|1 : CTCTACACACTA-GGCCGCATAC---TGCGAATTTGAGA-A-A-GATCTGT-CATTCGC-GG----TTTCTG--CT-ATGATC----TCAAA-TACTGGAT---GTTA-G----TAGGTGGCT-----TCGTACCTCTC-A-CTAGTAA-G---TAA-TCCGT-G-G-CGTT-G-T-GGTTATTATT----ATAA---C-GAAATATTAG----AAACATGCT-CC---TA--CA-TTGCG--CTAAGGA-A-ATTGCAAAATGCTCAAATCCAATCGTATATATAAT-TTCA-TTA-TGCAA-TTTTTTAAGCCAATGC-GTA-TT-GATGGCAAGAGCA-TTTGCATTGGGTCGGTAATA-A-TTA--TTATATAGTTCGTCACGAA-CTCGCAA-CATTCGTAAG--GATTGCG-TG-AAAGGTT--GGCAAAT--TGTTTTGAT--GTC--AA-ATTTTT------CG--TC-GTC--CGACGG-----GC-TTTA------AT-CAC--------CAGAATCCGGAATT-T-----TATTATTTC-G-CTTCGGG-CTTTATT--GCTTTGACTG-TTTCATGGTTTTTATTATT-CTTCTTTATCTTTATTTTTTTTTTTTTTTTTTACAT--TTGGGT-CAA--TTG-TAG------ATG-AGCT-C----CGATTTCTC-----C-TC-ACCC----------AAGTTTTTCGCTC------ACG-TC-------------AG---CA--T---AAGT---G----TTG--TT--CAATT-AACA--TGAA-G-TT--GT---CGA-AA---GAAT-T---TT-AAAAAT--GT-C---G---ACGCTA-GCCTC-C--TTTATATGGCGTTTT---TCTAATTG-ATCA---C--TCG-AAGAA-TTCG-TTAGACT-GCAAC-AAT-C-TC-GCA-GC-ATTCG--TGAA--GGTCGTG--AAG-C-ATGTGTA--TAT--TC-ACAAAT--TAA---TTGT-AAGTTAA--TCTTT-TATA-T-------TTATCGC---AA---AAAATCATAAG-GTTC--GTGA-GGAATT---CT-T-AA---AGTC-GCAAAA-CAC--TCGT-AAAG---ATT--CGTA---AGA--CAGCTTG-T--A-ACGA-TCGATTA----CTTGAT-GAT---C-TTTCAATA--TTTTA-AAA--CTC----AATT-CTATT--ATT---T-GCACG-AA-TTTCGT-GCGAA--A-GCC-AAAAGGTTT--TTATCATAG-A-AG-GAAAATATTCGACTATAGT-GT-GA
gi|10 : TGCTCTC-ACACTA-TGCCGAATATCCTTGCGA--TTGACATA-A-GA-ATGT-CATTCGC-CGCTCATT-C-G--CA-ATGAT------CGTATAGCT--AT--CGCTAGA----CA------T-----TCGTAC---TC-A-CTCTCAA-G---TAA-TC-GTCG-C-CGTTCG-T-GT-----GTT----TTAA---C-GAA-TATTAG----AAACATGCT-CC---TAA-TA-TT-CG--C-AAGGA-A-TT-G-AAATT-CTCAA-TCCAATCGTA-A-ATAAT-T-CA-T-A-TGCA--TTC-TTAAGCCAAT-C-GTATT--GATGGCAAGC-CA-TTTGCATTGA-TCG-TAATACA-TTCT-TTTTAT-ACTCGTCACA-A-CTCGCAAACACTCGTAAG--GATT-CA-CG--AAGGTTTGGACAAAT--T---TTGAC--GTC--AA-TTTTa
gi|11 : tacTACTGTCCACACTA-TGCCGAATATCCTTCCGA---TGACATAGA-AG-ATGT-CATTCGA-CGCTCA-TTC-G--CA-ATGA-------CGTATAAAT--AT--CGCTA-A----CA------T-----TCGTAC---TC-A-CTCTCAA-G---TAGTTC-GT-T-G-CGTTCGTT-GA-----TCT----TTAA---C--AC-TGATAGT---AAATAT-CT-CCA--CG--TA-TT-CG-----AGGA-A--TTG-GAATTGCTCAA-T--AATCGTA-A-ATAAT-T-CA-T-A-TGCA--TTATT-------AT-C-GTA-CA-GATGGC--GC-CA-TTTGCAC--A-TCG-TAATA-A-TTCC-TTTTATAACTCGTCACA-A-CTCGC-AACGCTC-TAGG--AATT--G-TGAAAAGGTTTGGGCAAAT--T---TTGAC--GTC--GA--ATTATTTCA--CGATTT-GTC--C-
gi|12 : aTACTGTCCACACTA-TGCCGAATATCCTTCCGA--T-GACATA-AAGA-ATATTCATTCGC-CGCTCATT-C-G--CACATGA-------CGTATAAAT--AT---GCTAGA----CA------T-----TCGTAC---TC-A-CTCTCAATG---TA--TC-GT-G-C--GTTCG-T-GA-----TCT----TTAA---C---A-TAT-AG----AATTAT-CT-CCACGTA---A-TT-CG----AAGGA-A-TTGG-AAATT-CTCAA-TC-AAT-GTA-A-ATAAT-T-CA-T-A-TGCA--TTATT-------AT-C-GTA-CAGGATGGCAG---CA-TT-GCACTGA-TCG-TAATACAATTCCATTTTATA-CTCG-CAC--A-CTCGCAAACGCTC-TA-G--GATT-CG-TG-AAAAGGTTGGGCAAAT--T---TTGAC--GTC--GA-TATTATTTCA--ACA-TT-GTC--C-
gi|13 : aTTT-CCT-TT----GAGTTTTATTGCT-TTTCTGG----TCATTTTTTTTTCTC-------CAT--TTG--------TTGG-TAGGACTACATGTAATT-CTGTTCGATTTCCCTCTGCC-TCAAACCCTTC-----CAA-CTTTGTTTCC------ACC-TCTC-----G-----ACATACATGT---CAGTC--A----AAAAACT--AAATT-AAAA-ATGAA-T-GT--ATT--CGA-GA--AGAATGT-G-TT-AAAAA---TT-C---A-CAACGCAT-GCGC--T--TTTAT-T--CATTTT-ATTCTAAATG-AC-A---C--TCGCAAGAATTTCGTTTAGACTCGCATC-GAT-TATC-GCAAGC-A-TCG--T-AAGCGGTGGTA--AA-GC-AGTTGTA
gi|14 : ttagtaAAT--TAA---TTGT-AAG-AAA--TTCTT-TATA-TTATCTGATTATTGC---AA---AAAATCACAAG-GTTC--GTAT-GGAATTTCATA-T-AA---AGTC-GC-AAA-CAC--ACGTGAAAGATAATT--GGTAAAGAAACACAG-TTGAT-AATACGA-TC--TTAAGCCCTTGAT-TGA---T-TTTCAATG--TTTAATAAA-CCCT----AATCATTGTTACATTGTCTGG-ACGAAA-TTTTCT-GCGAACCC-GCCAAAAA--TTT--TCATG-TCGCA-AG-G---ATATTCGGC-ATAGTAGT-GAGAt
gi|15 : --AAATT-AAAA--CGAA-G-GT--ATTT-CAG-AA--AGAAT-T-G-TT-AAAAA---AT-C---G-CAACGCA---CGTT-T--TATCT-T--CGTTTTA--TCTA-CTGGAT-A---TCGTCACGATAA-TTC--TTA-ACTTGCAAC-AATATA-A-GCAAACCATCAT--T-AG--GGTC-TA--AAGGCCATTTGTA-TCATA-TC-AGAAAT--TAA---TTGT-AAG-AAA--TCTTT-GATA-T-------T-ATTGC-A-AA---AAAATCACAAG-GTTC--GTAT-GGAATT---TA-TCAA---AGTC-GCAAAA-CAC--TCGT-AAAG---AT
gi|16 : aATCAT--TC-GCAAGT--TAA---TTGT-AAG-AAA--TTCTTGTATA---------TTATTGC-A-AA---AAAATCATAAG-GTTC--GTAT-GGAATT---CATT-AA---ACTC-GC-AAACCAC--TCGT-AAAG---ATT--CGTA---AGA--CAA-TCG-T-AA-ACGA-TC--TTAAG-CCTTGGT--GA---T-TTTTGATA--TTTTA-AAC-ACCC----AATC-TTATT--ATT-TCT-G-ACA-AA-TTTTCT-GCGAA--C-GCT-AACAT-TTT--TCAT--TCGCA-AG-G---ATATTCGGC-ACAGT-GT-GAGAGC
gi|17 : CAAGAA-TTCG-TTAGACTTGAAAC-AAT-TACC-GCAATC-ATTCG--T-AAG-GGTCGTA--AAGGC-ATTTGT-ATCAG--TC-AGAAAT--TAA---TTGT-AAG-ACA--TT-TT-TATA-T-------CTATTGCAA-AA---AAAATCATAAG-GTTC--GTAT-GGAATT---CATT-AA---AGTC-GCAAAA-CAC--TCGT-AAAG---ATT--CGTA---AGA--CAA-TTG-T-AA-ACGA-TC--ATAAG-C----AA-GGA---T-ATTC
gi|17 : --TCAT--AAGCA-AG-G---ATATTCGGC-ATAGT-GT-GAAAGCAggcatagtgtgaaagca
gi|18 : caagaattcgttagacttgaaacaattaccgcaatcattcgtaagggtcgtaaaggcatttgtatcagtcagaaattaattgtaagacatttttatatctattgcaaaaaaaatcataaggttcgtatggaattcattaaagtcgcaaaacactcgtaaagattcgtaagacaattgtaaacga-A-AA---AAAATCATAAG--TTC--GTAT-GAA--T---CG-T-TA---ACTC-G--AAA-CAC---CG---AAA---ATT--CATA---AGAC--AG-TTG-T-AA-ACTA-TC--TTAAG-CCTTGGT---A---T-TTTT-ATA--TTTTA-AAA--CCC----AATC-TTA-T--ATT-TCTGG-ACA-AA-TTTTCT-GCGAC--CAGCT-AACA--TTT--TCAT--
gi|19 : aTGCTCTC-ACACTA-TGCCTAATATCCTTGTGA--TTGACATA-A-GA-ATGT-CATTTCC-CGTTCA-GTC-G--CA-ATGATC----TTATA-GG-T--AT--TGCTA-GT---TA------T-----TCGTAC---TC-A-ATCTTAA-G---TAA-TC-GT-G-CTCGTTTG-T-GA-----GTT----TTAA---C-GAA-TACTAG----AAACATGCcaca
gi|2 : tacTGCTCTCCACACTAGTGCTGAATATCCTT-CGA--TTGACATA-A-GA-ATGC-CATTCGC-CGCTCATTTC-G--CA-ACGAT-----TCGTT-AGCT--AT--CGCTA-A----CA------T-----TCGTAC---TC-A-CTC-CAA-G---CAA-TC-GTCG-C-CGTTCA-T-GA-----GTT----TTAA-----GAA-TATTA-----AAACATGCTGCC---TA--TA-TT-CG--CAAAGGA-ATTTTG-AAATTTCTCAA-T-CAATCGTA-A-ATAA--T-CATT-A-TGCA--TTCTTTAAGCCAAT-C-GTA-T--GATGGCAAGC-CA-TTTGCATTGA-TCG-TAATACA-TTCC-TTTTATTACTCGTCAC--A-CT-GCAAACACTCGTAAG--GATT-CGTTG-AAAGGTTTGGGCAAAT--T---TTGAC--GTC--AA-TTTTTTTCCA--CGA-TT-GTC--C-ACGG-----AT-TTCA------AT-CAT--------CGGAAT---------T-----TATTATTTCCG-CTT-GGGTTTTT--T--GCTTTT-CTG-TT----GGTTTTTGTTGTTGTTTTTGT----TGTTGTTTTTTTTTT-------CAT--TTGG-T-CATCTTTG-TAGGAATAAA-GTAATT-CTGT-CGATTT-CCTCTGCC-TTGACCCCTTCGGCTTCAAGCTTTTTTCCC------ACC-TCT-------------C---CA-G----CAGT---G----AAAAACT--AAATT-AAAA-ACGAA-T-GT--ATT--CG--AT--AGATT-T-GTTT-AAAAA---ATAC---G-CAACG-AT-TTGCTGT--TTTAT-T--CGTTTTAATTCTAACTG-AT-AGTCC--TCGCAAGAA-TTCG-TTAAACTTGCGACTGAT-TATC-ACAAGC-ATTCA--T-AA--GGTCGTA--AAGGT-ATTTGTAATCAT--TC-AGAAAT--TAA---TTGT-AAG-AAAGTTTCTT-TATAGT-------TTATTGC-ATAA---AAAA----AA---------------AATC---C-----A---AGTC-GC-AAA-CAC--TCGT-AAAG---ATT--GGTA---AGAC-CAG-TTG-T-AA-ACGAGTCT-TTATG-CCTTGATGGGA---T-TTTCAATA--TTTAG-AAACCCCC----AATC-TTGTT--ATT-TCT-G-ACG-AA-TTTTCT-GTGAA--C-GGC-CAAA--TTT--TCAT--TCGCA-AG-G---ATATTCGGC-ATAGT-GT-GAGAGCA
gi|20 : GT-AAAG---ATT--CGTA---AGAC--AG-TTG-T-AA-ACGA-TC--TTAAG-CCTTGAT-G-A---T-TATCAATA--TTTTA-AAA-CCAC----AATC-TTATT--ATT-TCT-G-ACG-AA-TTTTCT-GCGAA--C-GCC-AAAAT-TTT--TCAT--TCGCA-AG-G---ATATTCGGC-ATAGT-GT-GAGAG
gi|21 : T---CA-T-AA---AGTC-GC-AAA-CAC--TCGT-AAAG---GATAATGTA---AGAC-AAG-TTG-T-AA-ACGA-TC--TTAAG-CCTTGAT-GAAAGCT-TTTCAATACTCTTTA-AAA-CCCCAATAAATC-TTGTT--ATT-TCT-G-ACG-AA-TTTTCT-g
gi|23 : a-AAAG---ATT--CGTA---AGAC--AG-TTG-T-AA-ACGA-TC--GTAAG-CATGGCT--GA---T-TTTCAATA--TTTTaat
gi|23 : A-TTTTCT-GCGAA--C-GTC-AAAAC-TTT--TCAT--TCGCA-AG-G---ATATTCGGC-ATAGT-GT-GAGAGCActgcgaacgtcaaaacttttcattcgcaaggatattcggcatagtgtgagagcagc
gi|24 : aaagattcgtaagacagttgtaaacgatcgtaagcatggctgattttcaatT-TCT-G-ACA-AAATTTTCT-ACGAA--A-GCC-AAAAT-TTT--TCAT--TCGCAGAG-G---ATATTC-GC-ATAGT-GTGGAGAGgc
gi|26 : T-CG-TG-AAAGGTTTGGGCAAAT--T---TTGAC--GTC--GA-TTTATTTTCA--CGA-TT-GTC--
gi|28 : -G---ATATTCGGC-ATAGT-GT-GAGAGCA
gi|3 : A-G---TAA-TC-GT-GGT-CGTTGG-T-GA-----GTT----TTAA---C-GAA-TATTAA----AAATATGCT-CA---TA--AAATT-CG--C-GAGAA-A-TT-G-AAATGT-TCAA-TCCAATTGTA-A-ATAAT-T-CA-T-A-T--------------------------T--GATGGCAAGC-CA-TTTGCATTGA-TTT-CAATACA-TTCC-TTATATA-------------CTCGAACACACTCGTAAGAAGA----G-TG-AAAG-TTGGGGCAAATGTT---TTGACATGTC--AAATTTTTTTTCA--CGA-TT-GTC--C-ACGG-----AT-TTCA------AT-CAC--------CGGAATCATCGGAATT-----TATTATTTCTG-CTT--------------------------T----GGATTTTATTGCT-TTTCTGT----TCATATTTT-------------CAT--TTGG-T-CATCTTTGGTAGGACTACATGTAATT-CTGTCCGATCTCCCTCTGTC-CGGACCCCTTC-----CA-GCGTTGTTCCC------ACC-TCAC-----GGT---AT---GA-GTTGTCAGT---TC---AAAAACT--AAATT-CAAA-ATGAA-G-GT--ATT--CGA-AA--ATAAT-T-G-TTTAAAAA---AT-C---C-CAACGCAT-GCGCT-T--TT-AT-T--TGTTTTA-TTCTAACTG-AC-A---C--TCGTAAGGA-TTCG-TTAGATTCGCAAC-GAT-TATC-GCAAGC-ATTCG--T-A--------TA----------TTATTGCCCC--CCAAAAAATCATAAGGTTCGT-ATG-GAA--TTCGT-TAAA-C----------TCGC-A-AA---TAACTCGTAAA-G-------------ATT---CA-T-AAGACAGTT-GT-AAA-gcatagg
gi|4 : -TT-CG--C-AAAGA-A-TTTA-AA--TTCTCAA-CCCAATCCTA-A-ATGAT-T-CA-T-A-TGCA--TTG-TTAAGGCAAT-T-GTA-TG-GATGATAAAC-CA-TGTGCATTGA-TGG-TAAT
gi|4 : aaacTT-CCGCTT----GGGTTTTATTGAT-ATTATGT----TCATTTTATTTTGGT-------CATCTTTGG-TACAT----G-CAGGGCTACATGTAATT-CTGTCCGGTTTCCCTCTGCC-TCGAACTATTC-----CA-GATTTGTTTCC------TCC-CTTC-----GGTATGAT---CT-TT---TAGT---TC---AAAAACT--AAATT-CAAA-ATGAA-G-GT--ATT--CGA-GA--AGAAT-T-C-TT-AAGAC---AT-T---G-CAATGCAT-ATGC--T--TTTAT-T--CGTTTT-ATTCTGA-----------------CAAAAA-TTCG-TTAGACTTGCAAC-GAT-TATC-GCAAGC-ATTCT--TAAA--GATCGTA--AAAGC-ACTTGT-----T--T------------A---TTGT-AAG-AAA--TTCTTGTATA-gataattcgcaaggttgttttatggtgatgttttttggtgttgatggagagtgtggcggtatagcaattggtgtgatataattgttagatatattattggaaccatcgaaagtattattccgcttgggttttattgatattatgttcattttattttggtcatctttggtacatgcagggctacatgtaattctgtccggtttccctctgcctcgaactattccagatttgtttcctcccttcggtatgatcttttagttcaaaaactaaattcaaaatgaaggtattcgagaagaattcttaagacattgcaatgcatatgcttttattcgttttattctgacaaaaattcgttagacttgcaacgattatcgcaagcattcttaaagatcgtaaaagcacttgtttattgtaagaaattcttgtata
gi|5 : aaacttcgcaaagaatttaaattctcaacccaatcctaaatgattcatatgcattgttaaggcaattgtatggatgataaaccatgtgcattgatggtaatgataattcgcaaggttgttttatggtgatgttttttggtgttgatggagagtgtggcggtatagcaattggtgtgatataattgttagatatattattggaaccatcgaaagtattaTGCTCTC-ACACTA-TGCCCAATATCCT-GCGA--TTGACGAA-A-GATCTGT-CATTCCG-CGTTT-CCTC-GACTA-ATGAT------CGTA-AA-T--ATA-CGCTT-A----GA------TATGGCTTGTAC---TCTA-CTATGAA-G---TAA-TC-GT-G-C-CGTT-G-T-GA-----GTTATTATTAA---C-GAA-TATTAG----AAACATGCT-CC---TA--AAATT-CG--C-AAGGA-A-TT-G-AAATG-CTCAA-TCCAATCGTA-A-ATAAT-T-CA-TTA-TGCA--TT-TTTAAGCCAAT-CCGTA-TT-GATG-CAAGC--A-TTTGCATTGG-TCG-TAATA-A-TTCA-TAT-ATAGTTCGTCAC--AATTCGCAAACATTCGTAAG--GATT-CG-T--AAAGGTT--GGCAATT--T---TTGAT--GTC--AA-ATTTTTT-CAGTCGG-T--GTC--C-ACGG-----CT-TTCA------AT-CACCAGAATCACGGAATT--------T-----TATTATTCTCG-C---------------------------TT----GGCTTTTATTGCT-TTACTGT----TCATGTTTTTTTTTT-------C
gi|6 : atacTCCGCACGCTCACT-C-G--CAGATGATGGTTATGGCATAGCT--ATACCGCTT-AGACTCA------T-----TCGTAC---TC-ATCTCTCAA-GTATTAG-TC-GTGG-C-CGTTCG-TCGA-----GTT----TAAAGGGCGGAA-TATTAGATCTAGACATGCG-CC---TAATTA-TT-TAGCC-AAGGACA-TTTG-CA--TTCTCAT-TCAAATCTCG-A-ATAATAT-CA-T-ATTGCATGTCCTCTAATTCA------------GAT------C-CATTTTGCTTTGA-TCG----TATG-TTTC-TTTttctt
gi|6 : TCGTAAT--GATT--G-TG-AA----TT-------T--T---TT-AC--GTTCAAA-TTTTTTTTCA--CGA-TTTGTCGCT-ACGATTTTTATATTCACTGGATATGCAT--------CGGAATT--------GGGGGGTATCATTTCCGTCTT-GGG-TTTT--TATGCTTTT-CTG-TT----Gatctacccaatatgataagataactttgtatttatatgtggctgacgatctttttcgtaatgattgtgaattttttacgttcaaattttttttcacgatttgtcgctacgatttttatattcactggatatgcatcggaattggggggtatcatttccgtcttgggtttttatgcttttctgttgccc
gi|7 : tccgcacgctcactcgcagatgatggttatggcatagctataccgcttagactcattcgtactcatctctcaagtattagtcgtggccgttcgtcgagtttaaagggcggaatattagatctagacatgcgcctaattatttagccaaggacatttgcattctcattcaaatctcgaataatatcatattgcatgtcctctaattcagatccattttgctttgatcgtatgtttctttatctacccaatatgataagataactttgtatttatatgtggctgacgatcttttTGTAATTTCTATCCGATTTCTCTCTGCCCTCGACCCCTTC-----CAGGCTCCTCCCCCCCCCCCACCCTCCCAGCATG-----AC---TT-GT---TAATTTAGTTCCAAAAACTTCAAATCCAAAACACGAC-GCGT--AATGGCGA-AACAAGCAT-T-G-TT-ACAAACACAC-CTCCG-CAACGCATTGC-CT-TCCTTTAT-T--CATTTTA-TTCTAATTG-AT-A---C--TCACAAGAA-TTCG-TTAGACTTGCAAC-AAT-TATC-GCAAGC-ATCCG--T-AA--AGTCGTGTCAAAGC-ATTTGT-ATCAT--TC-AGAAAT--AAA---TCGTAAAG-AAA--TTATT-TATA----------TATGGC-A-AAAACAAAATCATAAGCGTTCGTGTGT-GGAATT---CATT-AA---AGTC-GC-AAA--GC-----T-AAAG---AGT--CGTA---AGA--CAG-TTG-T-AACACGA-Tccc
gi|8 : T---G----AAAAA-T--AAATT-AAAA--CGAA-G-GT--ATTT-CGA-AA--AGAAT-TTG-TT-AAAAA---AT-----G-CAACGCAC-GTG------TTTAT-T--CGTTTTA-TTCTAACTG-AT-A---C--ACGCCAAGA-TTCG-TTAGACTTGCAAC-AAG-TATAAGCAACC-AT-CAATT-AG--GGTC-TA--A-GGC-ATTTGTA-TCATATTC-AGAA-T--TAA---TTGC-TAA-AAA--TTCTT-TATA-T-------T-ATTGC-A-AA---AAAATCACAAG-GT----GTATAGGAATT---TA-TCAA---AGTCTGC-AAA--ACCATCGT--AAG---ATTG-CGAA---A----CAG-TTG-TAAA-ACGA-TC--TTAAG-CCTTGAT--GA---TGTTTCAATA--TTTTA-AAA-CACC-----ATC-TTGTT--ATA-TCT-G-ACG-AA-TTTTCT-GCGAA--C-GCC---AA--TTTA-TCAT--TCGAA-CGAG---ATATTC-GC-ATAGtct
gi|9 : AATTCAAAA-ACGAAAG-GTTGATT--CGACAA--AGAAT-T-G-TT-AAAAA----T-C---GTCGACGC-T-ATGCT-C--TTTAG----CGTTTTTATTCTAATTG-AT-A---C--TCGCAAGA--TTCG-TTAGATCTGCAAC-AAT-CATC-GCAAGC-ATTCG--T-G---GGTCGTG--AAG-C-ATGTGTA--TAT--TC-AGAAAT--TAA---TT-T-AAG-AAA--TTCTT-TATA-T-------T-ATCGC-A-AA---AAAATCATAAG--TTC--GTAT-GGAATT---CA-TTAA---AGTC-GC-AAAACAC--TCGT-AAAG---ATT--CGTA---AGA--CAGCTTG-T-AA-ACGA-TC--TTA---CCTTGAT--GA---T-TTTCAATA--TTTTA-AAA---CC----AAT--TTATT--A-T-TCT-G-CCG-AA-TTTTCTGGCGAA--C-GCC-AAAAGGTTTTATCAT--TCGCA-AG-G---ATATTCGAC-ATAGT-GT-GAG
3 sequences could not be aligned to this reference sequence:
Unaligned ( gi|22 ): AGTTATAATCTTAAATTGTTATTGGACACGAGATAGCAAATAGCATGCTTTATTTTAAAAAGACGTCATTAAATGCAGGTTGAACTATAATAGCGAAAATACCAACTGTATGTACATATTAA
Unaligned ( gi|25 ): TTANNNNNNNNNNNNNNNNNNNNNNNNNAGAAAAGAGTATATATCTTGGTGTCATTA
Unaligned ( gi|27 ): GCNATGACATGCAGTTCTTGGATAATTTCTGT
Alignments
lowQualScore : 1 1 1 1 3333333 111 22222222222222222222 1 11111 1111 111 111 1111 1 1 11 2222222222222222222222 1 11 1111 22222222 222222 22222222 777777777777777 6666666666666666666666666 1111 1111 2222222 11 11111111 11111 111111 88888888888888888888888888888888888888 11 11 1111111111 11111 22 11111 22 22222222222 111 1 222 11 11 22
lowQualScore : 1 5 4 77 5 1 5 7 5 5 0 11 5 5 66 0 6666666 99 66 666 66666666666666666666 888 5 5 0 4 777 4 4 3 666 5 4 4 11111 9999 888888 4 3333 1 5 333 777 8 4 6666 4 4 0 4 1 2 4 22 4 4 4 4 4 8 4 00 5555555555555555555555 0 0 4 4 4 4 0 5 66 11 1 9999 1 2 66 88 4 4 55 66 777 66 666 66 2 66 5 5 66 5 00000000 333333 8 99999999 777777777777777 3 8 0 1111111111111111111111111 2222 1 6 4444 1 1 1111111 11 99999999 0 8 6 5 6 1 2 66666 9 1 999999 6 44444444444444444444444444444444444444 66 8 11 4 4 66 55 4 66 4 777 4 5555555555 4 55 33333 7777 55 3 4 4 888888 4 4 4 4 4 4 55 33333 2 55 33 4 22 99 4 55 666 3 3 55 7 66666666666 2 777 666 55 55 3 555 333 555 3 0 6 777 3 555 77 555 000 6 3 3 6 3 88 2 3 88 666 3 55 4 33 9999 4 66 4 8 4 4 3 3 55 4 4 77 88 88 4 3 666 3 4 4
lowQualScore : . . . .. . . . . . . . .. . . .. . ....... .. .. ... .................... ... . . . . ... . . . ... . . . ..... .... ...... . .... . . ... ... . . .... . . . . . . . .. . . . . . . . .. ...................... . . . . . . . . .. .. . .... . . .. .. . . .. .. ... .. ... .. . .. . . .. . ........ ...... . ........ ............... . . . ......................... .... . . .... . . ....... .. ........ . . . . . . . ..... . . ...... . ...................................... .. . .. . . .. .. . .. . ... . .......... . .. ..... .... .. . . . ...... . . . . . . .. ..... . .. .. . .. .. . .. ... . . .. . ........... . ... ... .. .. . ... ... ... . . . ... . ... .. ... ... . . . . . .. . . .. ... . .. . .. .... . .. . . . . . . .. . . .. .. .. . . ... . . .
lowQualScore : 4 7 3 99 0 7 7 1 7 0 2 00 5 0 99 0 1111111 00 99 444 44444444444444444444 888 0 0 1 4 888 4 4 3 222 7 4 4 11111 4444 999999 4 9999 1 0 888 444 9 4 1111 4 4 0 4 9 7 4 22 4 4 4 4 4 9 4 66 9999999999999999999999 1 1 4 4 4 4 8 0 44 00 4 4444 4 5 99 33 4 4 77 11 888 11 888 77 0 99 0 0 99 7 88888888 000000 0 00000000 222222222222222 2 0 8 0000000000000000000000000 1111 0 7 2222 0 5 7777777 00 22222222 6 0 7 2 7 0 5 77777 8 0 222222 7 99999999999999999999999999999999999999 99 9 88 4 4 11 00 4 11 4 222 4 4444444444 4 44 88888 0000 77 7 4 4 444444 0 0 0 0 0 0 55 88888 5 55 22 0 88 55 0 00 444 6 6 00 3 88888888888 1 222 444 00 00 6 888 000 888 3 0 7 333 1 444 99 888 888 7 3 3 7 3 66 3 6 66 444 6 55 4 99 4444 4 11 0 0 0 0 6 6 55 0 0 00 66 66 0 6 444 6 0 0
consensus : TGCTCTCCACACTA-TGCCGAATATCCTTGCGA--TTGACATAA-GA-ATGT-CATTCGC-CGCTCATTTC-G--CA-ATGAT-----TCGTATAGCT--AT--CGCTA-A----CA------T-----TCGTAC---TC-A-CTCTCAA-G---TAA-TC-GT-G-C-CGTTCG-T-GA-----GTT----TTAA---C-GAA-TATTAG----AAACATGCT-CC---TA--TA-TT-CG--C-AAGGA-A-TTTG-AAATTTCTCAA-TCCAATCGTA-A-ATAAT-T-CA-T-A-TGCA--TTNTTTAAGCCAAT-C-GTA-T--GATGGCAAGC-CA-TTTGCATTGA-TCG-TAATACA-TTCC-TTTTATAACTCGTCAC--A-CTCGCAAACGCTCGTAAG--GATT-CG-TG-AAAGGTTTGGGCAAAT--T---TTGAC--GTC--GA-TTTTTTTTCA--CGA-TT-GTC--C-ACGG-----AT-TTCA------AT-CAC--------CGGAATC--------T-----TATTATTTCCG-CTT-GGG-TTTT--T--GCTTTT-CCG-TT----GGNTTTTATTGCT-TTTCTGT----TCATNTTTTTTTTTT-------CAT--TTGG-T-CATCTTTG-TAGGACTACATGTAATT-CTGTCCGATTTCCCTCTGCC-TCGACCCCTTC-----CAAGCTTTNTTCCC------ACC-TCTC-----G-----AC---CA-GT---CAGT---G----AAAAACT--AAATT-AAAA-ACGAA-G-GT--ATT--CGA-AA--AGAAT-T-G-TT-AAAAA---AT-C---G-CAACGCAT-GCGCT-T--TTTAT-T--CGTTTTAATTCTAACTG-AT-A---C--TCGCAAGAA-TTCG-TTAGACTTGCAAC-GAT-TATC-GCAAGC-ATTCG--T-AA--GGTCGTA--AAGGC-ATTTGTAATCAT--TC-AGAAAT--TAA---TTGT-AAG-AAA--TTCTT-TATA-T-------TTATCGC-A-AA---AAAATCATAAG-GTTC--GTAT-GGAATT---CA-T-AA---AGTC-GC-AAA-CAC--TCGT-AAAG---ATT--CGTA---AGAC-CAG-TTG-T-AA-ACGA-TC--TTAAG-CCTTGAT-GGA---T-TTTCAATA--TTTTA-AAA-CCCC----AATC-TTGTT--ATT-TCT-G-ACG-AA-TTTTCT-GCGAA--C-GCC-AAAA--TTT--TCAT--TCGCA-AG-G---ATATTCGGC-ATAGT-GT-GAGAGCA
Reference ( family-2029 ) : TGCTCTCCACACTA-TGCCGAATATCCTTGCGA--TTGACATAA-GA-ATGT-CATTCGC-CGCTCATTTC-G--CA-ATGAT-----TCGTATAGCT--AT--CGCTA-A----CA------T-----TCGTAC---TC-A-CTCTCAA-G---TAA-TC-GT-G-C-CGTTCG-T-GA-----GTT----TTAA---C-GAA-TATTAG----AAACATGCT-CC---TA--TA-TT-CG--C-AAGGA-A-TTTG-AAATTTCTCAA-TCCAATCGTA-A-ATAAT-T-CA-T-A-TGCA--TTNTTTAAGCCAAT-C-GTA-T--GATGGCAAGC-CA-TTTGCATTGA-TCG-TAATACA-TTCC-TTTTATAACTCGTCAC--A-CTCGCAAACGCTCGTAAG--GATT-CG-TG-AAAGGTTTGGGCAAAT--T---TTGAC--GTC--GA-TTTTTTTTCA--CGA-TT-GTC--C-ACGG-----AT-TTCA------AT-CAC--------CGGAATC--------T-----TATTATTTCCG-CTT-GGG-TTTT--T--GCTTTT-CCG-TT----GGNTTTTATTGCT-TTTCTGT----TCATNTTTTTTTTTT-------CAT--TTGG-T-CATCTTTG-TAGGACTACATGTAATT-CTGTCCGATTTCCCTCTGCC-TCGACCCCTTC-----CAAGCTTTNTTCCC------ACC-TCTC-----G-----AC---CA-GT---CAGT---G----AAAAACT--AAATT-AAAA-ACGAA-G-GT--ATT--CGA-AA--AGAAT-T-G-TT-AAAAA---AT-C---G-CAACGCAT-GCGCT-T--TTTAT-T--CGTTTTAATTCTAACTG-AT-A---C--TCGCAAGAA-TTCG-TTAGACTTGCAAC-GAT-TATC-GCAAGC-ATTCG--T-AA--GGTCGTA--AAGGC-ATTTGTAATCAT--TC-AGAAAT--TAA---TTGT-AAG-AAA--TTCTT-TATA-T-------TTATCGC-A-AA---AAAATCATAAG-GTTC--GTAT-GGAATT---CA-T-AA---AGTC-GC-AAA-CAC--TCGT-AAAG---ATT--CGTA---AGAC-CAG-TTG-T-AA-ACGA-TC--TTAAG-CCTTGAT-GGA---T-TTTCAATA--TTTTA-AAA-CCCC----AATC-TTGTT--ATT-TCT-G-ACG-AA-TTTTCT-GCGAA--C-GCC-AAAA--TTT--TCAT--TCGCA-AG-G---ATATTCGGC-ATAGT-GT-GAGAGCA
gi|1 : CTCTACACACTA-GGCCGCATAC---TGCGAATTTGAGA-AA-GATCTGT-CATTCGC-GG----TTTCTG--CT-ATGATC----TCAAATA-CTGGAT---GTTA-G----TAGGTGGCT-----TCGTACCTCTC-A-CTAGTAA-G---TAA-TCCGT-G-G-CGTT-G-T-GGTTATTATT----ATAA---C-GAAATATTAG----AAACATGCT-CC---TA--CA-TTGCG--CTAAGGA-A-ATTGCAAAATGCTCAAATCCAATCGTATATATAAT-TTCA-TTA-TGCAA-TTTTTTAAGCCAATGC-GTA-TT-GATGGCAAGAGCA-TTTGCATTGGGTCGGTAATA-A-TTA--TTATATAGTTCGTCACGAA-CTCGCAA-CATTCGTAAG--GATTGCG-TG-AAAGGTT--GGCAAAT--TGTTTTGAT--GTC--AA-ATTTTT------CG--TC-GTC--CGACGG-----GC-TTTA------AT-CAC--------CAGAATCCGGAATT-T-----TATTATTTC-G-CTTCGGG-CTTTATT--GCTTTGACTG-TTTCATGGTTTTTATTATT-CTTCTTTATCTTTATTTTTTTTTTTTTTTTTTACAT--TTGGGT-CAA--TTG-TAG------ATG-AGCT-C----CGATTTCTC-----C-TC-ACCC----------AAGTTTTTCGCTC------ACG-TC-------------AG---CA--T---AAGT---G----TTG--TT--CAATT-AACA--TGAA-G-TT--GT---CGA-AA---GAAT-T---TT-AAAAAT--GT-C---G---ACGCTA-GCCTC-C--TTTATATGGCGTTTT---TCTAATTG-ATCA---C--TCG-AAGAA-TTCG-TTAGACT-GCAAC-AAT-C-TC-GCA-GC-ATTCG--TGAA--GGTCGTG--AAG-C-ATGTGTA--TAT--TC-ACAAAT--TAA---TTGT-AAGTTAA--TCTTT-TATA-T-------TTATCGC---AA---AAAATCATAAG-GTTC--GTGA-GGAATT---CT-T-AA---AGTC-GCAAAA-CAC--TCGT-AAAG---ATT--CGTA---AGA--CAGCTTG-T--A-ACGA-TCGATTA----CTTGAT-GAT---C-TTTCAATA--TTTTA-AAA--CTC----AATT-CTATT--ATT---T-GCACG-AA-TTTCGT-GCGAA--A-GCC-AAAAGGTTT--TTATCATAG-A-AG-GAAAATATTCGACTATAGT-GT-GA
gi|10 : TGCTCTC-ACACTA-TGCCGAATATCCTTGCGA--TTGACATAA-GA-ATGT-CATTCGC-CGCTCATT-C-G--CA-ATGAT------CGTATAGCT--AT--CGCTAGA----CA------T-----TCGTAC---TC-A-CTCTCAA-G---TAA-TC-GTCG-C-CGTTCG-T-GT-----GTT----TTAA---C-GAA-TATTAG----AAACATGCT-CC---TAA-TA-TT-CG--C-AAGGA-A-TT-G-AAATT-CTCAA-TCCAATCGTA-A-ATAAT-T-CA-T-A-TGCA--TTC-TTAAGCCAAT-C-GTATT--GATGGCAAGC-CA-TTTGCATTGA-TCG-TAATACA-TTCT-TTTTAT-ACTCGTCACA-A-CTCGCAAACACTCGTAAG--GATT-CA-CG--AAGGTTTGGACAAAT--T---TTGAC--GTC--AA-TTTTa
gi|11 : tacTACTGTCCACACTA-TGCCGAATATCCTTCCGA--T-GACATAG-AAGATGT-CATTCGA-CGCTCATT-C-G--CA-ATGA-------CGTATAAAT--AT--CGCTA-A----CA------T-----TCGTAC---TC-A-CTCTCAA-G---TAGTTC-GT-T-G-CGTTCGTT-GA-----TCT----TTAA---C--AC-TGATAGT---AAATAT-CT-CCA--CG--TA-TT-CG-----AGGA-A--TTG-GAATTGCTCAA-T--AATCGTA-A-ATAAT-T-CA-T-A-TGCA--TTATT-------AT-C-GTA-CA-GATGGC--GC-CA-TTTGCAC--A-TCG-TAATA-A-TTCC-TTTTATAACTCGTCACA-A-CTCGC-AACGCTC-TAGG--AATT--G-TGAAAAGGTTTGGGCAAAT--T---TTGAC--GTC--GA--ATTATTTCA--CGATTT-GTC--C-
gi|12 : aTACTGTCCACACTA-TGCCGAATATCCTTCCGA--T-GACATAAAGA-ATATTCATTCGC-CGCTCATT-C-G--CACATGA-------CGTATAAAT--AT---GCTAGA----CA------T-----TCGTAC---TC-A-CTCTCAATG---TA--TC-GT-G-C--GTTCG-T-GA-----TCT----TTAA---C---A-TAT-AG----AATTAT-CT-CCACGTA---A-TT-CG----AAGGA-A-TTGG-AAATT-CTCAA-TC-AAT-GTA-A-ATAAT-T-CA-T-A-TGCA--TTATT-------AT-C-GTA-CAGGATGGCAG---CA-TT-GCACTGA-TCG-TAATACAATTCCATTTTATA-CTCG-CAC--A-CTCGCAAACGCTC-TA-G--GATT-CG-TG-AAAAGGTTGGGCAAAT--T---TTGAC--GTC--GA-TATTATTTCA--ACA-TT-GTC--C-
gi|13 : aTTT-CCT-TT----GAGTTTTATTGCT-TTTCTGG----TCATTTTTTTTTCTC-------CAT--TTG--------TTGG-TAGGACTACATGTAATT-CTGTTCGATTTCCCTCTGCC-TCAAACCCTTC-----CAA-CTTTGTTTCC------ACC-TCTC-----G-----ACATACATGT---CAGTC--A----AAAAACT--AAATT-AAAA-ATGAA-T-GT--ATT--CGA-GA--AGAATGT-G-TT-AAAAA---TT-C---A-CAACGCAT-GCGC--T--TTTAT-T--CATTTT-ATTCTAAATG-AC-A---C--TCGCAAGAATTTCGTTTAGACTCGCATC-GAT-TATC-GCAAGC-A-TCG--T-AAGCGGTGGTA--AA-GC-AGTTGTA
gi|14 : ttagtaAAT--TAA---TTGT-AAG-AAA--TTCTT-TATA-TTATCTGATTATTGC---AA---AAAATCACAAG-GTTC--GTAT-GGAATTTCATA-T-AA---AGTC-GC-AAA-CAC--ACGTGAAAGATAATT--GGTAAAGAAACACAG-TTGAT-AATACGA-TC--TTAAGCCCTTGAT-TGA---T-TTTCAATG--TTTAATAAA-CCCT----AATCATTGTTACATTGTCTGG-ACGAAA-TTTTCT-GCGAACCC-GCCAAAAA--TTT--TCATG-TCGCA-AG-G---ATATTCGGC-ATAGTAGT-GAGAt
gi|15 : --AAATT-AAAA--CGAA-G-GT--ATTT-CAG-AA--AGAAT-T-G-TT-AAAAA---AT-C---G-CAACGCA---CGTT-T--TATCT-T--CGTTTTA--TCTA-CTGGAT-A---TCGTCACGATAA-TTC--TTA-ACTTGCAAC-AATATA-A-GCAAACCATCAT--T-AG--GGTC-TA--AAGGCCATTTGTA-TCATA-TC-AGAAAT--TAA---TTGT-AAG-AAA--TCTTT-GATA-T-------T-ATTGC-A-AA---AAAATCACAAG-GTTC--GTAT-GGAATT---TA-TCAA---AGTC-GCAAAA-CAC--TCGT-AAAG---AT
gi|16 : aATCAT--TC-GCAAGT--TAA---TTGT-AAG-AAA--TTCTTGTATA---------TTATTGC-A-AA---AAAATCATAAG-GTTC--GTAT-GGAATT---CATT-AA---ACTC-GC-AAACCAC--TCGT-AAAG---ATT--CGTA---AGA--CAA-TCG-T-AA-ACGA-TC--TTAAG-CCTTGGT--GA---T-TTTTGATA--TTTTA-AAC-ACCC----AATC-TTATT--ATT-TCT-G-ACA-AA-TTTTCT-GCGAA--C-GCT-AACAT-TTT--TCAT--TCGCA-AG-G---ATATTCGGC-ACAGT-GT-GAGAGC
gi|17 : CAAGAA-TTCG-TTAGACTTGAAAC-AAT-TACC-GCAATC-ATTCG--T-AAG-GGTCGTA--AAGGC-ATTTGT-ATCAG--TC-AGAAAT--TAA---TTGT-AAG-ACA--TT-TT-TATA-T-------CTATTGCAA-AA---AAAATCATAAG-GTTC--GTAT-GGAATT---CATT-AA---AGTC-GCAAAA-CAC--TCGT-AAAG---ATT--CGTA---AGA--CAA-TTG-T-AA-ACGA-TC--ATAAG-C----AA-GGA---T-ATTC
gi|17 : --TCAT--AAGCA-AG-G---ATATTCGGC-ATAGT-GT-GAAAGCAggcatagtgtgaaagca
gi|18 : caagaattcgttagacttgaaacaattaccgcaatcattcgtaagggtcgtaaaggcatttgtatcagtcagaaattaattgtaagacatttttatatctattgcaaaaaaaatcataaggttcgtatggaattcattaaagtcgcaaaacactcgtaaagattcgtaagacaattgtaaacga-A-AA---AAAATCATAAG--TTC--GTAT-GAA--T---CG-T-TA---ACTC-G--AAA-CAC---CG---AAA---ATT--CATA---AGAC--AG-TTG-T-AA-ACTA-TC--TTAAG-CCTTGGT---A---T-TTTT-ATA--TTTTA-AAA--CCC----AATC-TTA-T--ATT-TCTGG-ACA-AA-TTTTCT-GCGAC--CAGCT-AACA--TTT--TCAT--
gi|19 : aTGCTCTC-ACACTA-TGCCTAATATCCTTGTGA--TTGACATAA-GA-ATGT-CATTTCC-CGTTCA-GTC-G--CA-ATGA------TCTTATAGGT--AT--TGCTA-GT---TA------T-----TCGTAC---TC-A-ATCTTAA-G---TAA-TC-GT-G-CTCGTTTG-T-GA-----GTT----TTAA---C-GAA-TACTAG----AAACATGCcaca
gi|2 : tacTGCTCTCCACACTAGTGCTGAATATCCTT-CGA--TTGACATAA-GA-ATGC-CATTCGC-CGCTCATTTC-G--CA-ACGAT-----TCGT-TAGCT--AT--CGCTA-A----CA------T-----TCGTAC---TC-A-CTC-CAA-G---CAA-TC-GTCG-C-CGTTCA-T-GA-----GTT----TTAA-----GAA-TATTA-----AAACATGCTGCC---TA--TA-TT-CG--CAAAGGA-ATTTTG-AAATTTCTCAA-T-CAATCGTA-A-ATAA--T-CATT-A-TGCA--TTCTTTAAGCCAAT-C-GTA-T--GATGGCAAGC-CA-TTTGCATTGA-TCG-TAATACA-TTCC-TTTTATTACTCGTCAC--A-CT-GCAAACACTCGTAAG--GATT-CGTTG-AAAGGTTTGGGCAAAT--T---TTGAC--GTC--AA-TTTTTTTCCA--CGA-TT-GTC--C-ACGG-----AT-TTCA------AT-CAT--------CGGAAT---------T-----TATTATTTCCG-CTT-GGGTTTTT--T--GCTTTT-CTG-TT----GGTTTTTGTTGTTGTTTTTGT----TGTTGTTTTTTTTTT-------CAT--TTGG-T-CATCTTTG-TAGGAATAAA-GTAATT-CTGT-CGATTT-CCTCTGCC-TTGACCCCTTCGGCTTCAAGCTTTTTTCCC------ACC-TCT-------------C---CA-G----CAGT---G----AAAAACT--AAATT-AAAA-ACGAA-T-GT--ATT--CG--AT--AGATT-T-GTTT-AAAAA---ATAC---G-CAACG-AT-TTGCTGT--TTTAT-T--CGTTTTAATTCTAACTG-AT-AGTCC--TCGCAAGAA-TTCG-TTAAACTTGCGACTGAT-TATC-ACAAGC-ATTCA--T-AA--GGTCGTA--AAGGT-ATTTGTAATCAT--TC-AGAAAT--TAA---TTGT-AAG-AAAGTTTCTT-TATAGT-------TTATTGC-ATAA---AAAA----AA---------------AATC---C-----A---AGTC-GC-AAA-CAC--TCGT-AAAG---ATT--GGTA---AGAC-CAG-TTG-T-AA-ACGAGTCT-TTATG-CCTTGATGGGA---T-TTTCAATA--TTTAG-AAACCCCC----AATC-TTGTT--ATT-TCT-G-ACG-AA-TTTTCT-GTGAA--C-GGC-CAAA--TTT--TCAT--TCGCA-AG-G---ATATTCGGC-ATAGT-GT-GAGAGCA
gi|20 : GT-AAAG---ATT--CGTA---AGAC--AG-TTG-T-AA-ACGA-TC--TTAAG-CCTTGAT-G-A---T-TATCAATA--TTTTA-AAA-CCAC----AATC-TTATT--ATT-TCT-G-ACG-AA-TTTTCT-GCGAA--C-GCC-AAAAT-TTT--TCAT--TCGCA-AG-G---ATATTCGGC-ATAGT-GT-GAGAG
gi|21 : T---CA-T-AA---AGTC-GC-AAA-CAC--TCGT-AAAG---GATAATGTA---AGAC-AAG-TTG-T-AA-ACGA-TC--TTAAG-CCTTGAT-GAAAGCT-TTTCAATACTCTTTA-AAA-CCCCAATAAATC-TTGTT--ATT-TCT-G-ACG-AA-TTTTCT-g
gi|23 : a-AAAG---ATT--CGTA---AGAC--AG-TTG-T-AA-ACGA-TC--GTAAG-CATGGCT--GA---T-TTTCAATA--TTTTaat
gi|23 : A-TTTTCT-GCGAA--C-GTC-AAAAC-TTT--TCAT--TCGCA-AG-G---ATATTCGGC-ATAGT-GT-GAGAGCActgcgaacgtcaaaacttttcattcgcaaggatattcggcatagtgtgagagcagc
gi|24 : aaagattcgtaagacagttgtaaacgatcgtaagcatggctgattttcaatT-TCT-G-ACA-AAATTTTCT-ACGAA--A-GCC-AAAAT-TTT--TCAT--TCGCAGAG-G---ATATTC-GC-ATAGT-GTGGAGAGgc
gi|26 : T-CG-TG-AAAGGTTTGGGCAAAT--T---TTGAC--GTC--GA-TTTATTTTCA--CGA-TT-GTC--
gi|28 : -G---ATATTCGGC-ATAGT-GT-GAGAGCA
gi|3 : A-G---TAA-TC-GT-GGT-CGTTGG-T-GA-----GTT----TTAA---C-GAA-TATTAA----AAATATGCT-CA---TA--AAATT-CG--C-GAGAA-A-TT-G-AAATGT-TCAA-TCCAATTGTA-A-ATAAT-T-CA-T-A-T--------------------------T--GATGGCAAGC-CA-TTTGCATTGA-TTT-CAATACA-TTCC-TTATATA-------------CTCGAACACACTCGTAAGAAGA----G-TG-AAAG-TTGGGGCAAATGTT---TTGACATGTC--AAATTTTTTTTCA--CGA-TT-GTC--C-ACGG-----AT-TTCA------AT-CAC--------CGGAATCATCGGAATT-----TATTATTTCTG-CTT--------------------------T----GGATTTTATTGCT-TTTCTGT----TCATATTTT-------------CAT--TTGG-T-CATCTTTGGTAGGACTACATGTAATT-CTGTCCGATCTCCCTCTGTC-CGGACCCCTTC-----CA-GCGTTGTTCCC------ACC-TCAC-----GGT---AT---GA-GTTGTCAGT---TC---AAAAACT--AAATT-CAAA-ATGAA-G-GT--ATT--CGA-AA--ATAAT-T-G-TTTAAAAA---AT-C---C-CAACGCAT-GCGCT-T--TT-AT-T--TGTTTTA-TTCTAACTG-AC-A---C--TCGTAAGGA-TTCG-TTAGATTCGCAAC-GAT-TATC-GCAAGC-ATTCG--T-A--------TA----------TTATTGCCCC--CCAAAAAATCATAAGGTTCGT-ATG-GAA--TTCGT-TAAA-C----------TCGC-A-AA---TAACTCGTAAA-G-------------ATT---CA-T-AAGACAGTT-GT-AAA-gcatagg
gi|4 : -TT-CG--C-AAAGA-A-TTTA-AA--TTCTCAA-CCCAATCCTA-A-ATGAT-T-CA-T-A-TGCA--TTG-TTAAGGCAAT-T-GTA-TG-GATGATAAAC-CA-TGTGCATTGA-TGG-TAAT
gi|4 : aaacTT-CCGCTT----GGGTTTTATTGAT-ATTATGT----TCATTTTATTTTGGT-------CATCTTTGG-TACAT----G-CAGGGCTACATGTAATT-CTGTCCGGTTTCCCTCTGCC-TCGAACTATTC-----CA-GATTTGTTTCC------TCC-CTTC-----GGTATGAT---CT-TT---TAGT---TC---AAAAACT--AAATT-CAAA-ATGAA-G-GT--ATT--CGA-GA--AGAAT-T-C-TT-AAGAC---AT-T---G-CAATGCAT-ATGC--T--TTTAT-T--CGTTTT-ATTCTGA-----------------CAAAAA-TTCG-TTAGACTTGCAAC-GAT-TATC-GCAAGC-ATTCT--TAAA--GATCGTA--AAAGC-ACTTGT-----T--T------------A---TTGT-AAG-AAA--TTCTTGTATA-gataattcgcaaggttgttttatggtgatgttttttggtgttgatggagagtgtggcggtatagcaattggtgtgatataattgttagatatattattggaaccatcgaaagtattattccgcttgggttttattgatattatgttcattttattttggtcatctttggtacatgcagggctacatgtaattctgtccggtttccctctgcctcgaactattccagatttgtttcctcccttcggtatgatcttttagttcaaaaactaaattcaaaatgaaggtattcgagaagaattcttaagacattgcaatgcatatgcttttattcgttttattctgacaaaaattcgttagacttgcaacgattatcgcaagcattcttaaagatcgtaaaagcacttgtttattgtaagaaattcttgtata
gi|5 : aaacttcgcaaagaatttaaattctcaacccaatcctaaatgattcatatgcattgttaaggcaattgtatggatgataaaccatgtgcattgatggtaatgataattcgcaaggttgttttatggtgatgttttttggtgttgatggagagtgtggcggtatagcaattggtgtgatataattgttagatatattattggaaccatcgaaagtattaTGCTCTC-ACACTA-TGCCCAATATCCT-GCGA--TTGACGAAA-GATCTGT-CATTCCG-CGTTT-CCTC-GACTA-ATGAT------CGTAAA--T--ATA-CGCTT-A----GA------TATGGCTTGTAC---TCTA-CTATGAA-G---TAA-TC-GT-G-C-CGTT-G-T-GA-----GTTATTATTAA---C-GAA-TATTAG----AAACATGCT-CC---TA--AAATT-CG--C-AAGGA-A-TT-G-AAATG-CTCAA-TCCAATCGTA-A-ATAAT-T-CA-TTA-TGCA--TT-TTTAAGCCAAT-CCGTA-TT-GATG-CAAGC--A-TTTGCATTGG-TCG-TAATA-A-TTCA-TAT-ATAGTTCGTCAC--AATTCGCAAACATTCGTAAG--GATT-CG-T--AAAGGTT--GGCAATT--T---TTGAT--GTC--AA-ATTTTTT-CAGTCGG-T--GTC--C-ACGG-----CT-TTCA------AT-CACCAGAATCACGGAATT--------T-----TATTATTCTCG-C---------------------------TT----GGCTTTTATTGCT-TTACTGT----TCATGTTTTTTTTTT-------C
gi|6 : atacTCCGCACGCTCACT-C-G--CAGATGATGGTTATGGCATAGCT--ATACCGCTT-AGACTCA------T-----TCGTAC---TC-ATCTCTCAA-GTATTAG-TC-GTGG-C-CGTTCG-TCGA-----GTT----TAAAGGGCGGAA-TATTAGATCTAGACATGCG-CC---TAATTA-TT-TAGCC-AAGGACA-TTTG-CA--TTCTCAT-TCAAATCTCG-A-ATAATAT-CA-T-ATTGCATGTCCTCTAATTCA------------GAT------C-CATTTTGCTTTGA-TCG----TATG-TTTC-TTTttctt
gi|6 : TCGTAAT--GATT--G-TG-AA----TT-------T--T---TT-AC--GTTCAAA-TTTTTTTTCA--CGA-TTTGTCGCT-ACGATTTTTATATTCACTGGATATGCAT--------CGGAATT--------GGGGGGTATCATTTCCGTCTT-GGG-TTTT--TATGCTTTT-CTG-TT----Gatctacccaatatgataagataactttgtatttatatgtggctgacgatctttttcgtaatgattgtgaattttttacgttcaaattttttttcacgatttgtcgctacgatttttatattcactggatatgcatcggaattggggggtatcatttccgtcttgggtttttatgcttttctgttgccc
gi|7 : tccgcacgctcactcgcagatgatggttatggcatagctataccgcttagactcattcgtactcatctctcaagtattagtcgtggccgttcgtcgagtttaaagggcggaatattagatctagacatgcgcctaattatttagccaaggacatttgcattctcattcaaatctcgaataatatcatattgcatgtcctctaattcagatccattttgctttgatcgtatgtttctttatctacccaatatgataagataactttgtatttatatgtggctgacgatcttttTGTAATTTCTATCCGATTTCTCTCTGCCCTCGACCCCTTC-----CAGGCTCCTCCCCCCCCCCCACCCTCCCAGCATG-----AC---TT-GT---TAATTTAGTTCCAAAAACTTCAAATCCAAAACACGAC-GCGT--AATGGCGA-AACAAGCAT-T-G-TT-ACAAACACAC-CTCCG-CAACGCATTGC-CT-TCCTTTAT-T--CATTTTA-TTCTAATTG-AT-A---C--TCACAAGAA-TTCG-TTAGACTTGCAAC-AAT-TATC-GCAAGC-ATCCG--T-AA--AGTCGTGTCAAAGC-ATTTGT-ATCAT--TC-AGAAAT--AAA---TCGTAAAG-AAA--TTATT-TATA----------TATGGC-A-AAAACAAAATCATAAGCGTTCGTGTGT-GGAATT---CATT-AA---AGTC-GC-AAA--GC-----T-AAAG---AGT--CGTA---AGA--CAG-TTG-T-AACACGA-Tccc
gi|8 : T---G----AAAAA-T--AAATT-AAAA--CGAA-G-GT--ATTT-CGA-AA--AGAAT-TTG-TT-AAAAA---AT-----G-CAACGCAC-GTG------TTTAT-T--CGTTTTA-TTCTAACTG-AT-A---C--ACGCCAAGA-TTCG-TTAGACTTGCAAC-AAG-TATAAGCAACC-AT-CAATT-AG--GGTC-TA--A-GGC-ATTTGTA-TCATATTC-AGAA-T--TAA---TTGC-TAA-AAA--TTCTT-TATA-T-------T-ATTGC-A-AA---AAAATCACAAG-GT----GTATAGGAATT---TA-TCAA---AGTCTGC-AAA--ACCATCGT--AAG---ATTG-CGAA---A----CAG-TTG-TAAA-ACGA-TC--TTAAG-CCTTGAT--GA---TGTTTCAATA--TTTTA-AAA-CACC-----ATC-TTGTT--ATA-TCT-G-ACG-AA-TTTTCT-GCGAA--C-GCC---AA--TTTA-TCAT--TCGAA-CGAG---ATATTC-GC-ATAGtct
gi|9 : AATTCAAAA-ACGAAAG-GTTGATT--CGACAA--AGAAT-T-G-TT-AAAAA----T-C---GTCGACGC-T-ATGCT-C--TTTAG----CGTTTTTATTCTAATTG-AT-A---C--TCGCAAGA--TTCG-TTAGATCTGCAAC-AAT-CATC-GCAAGC-ATTCG--T-G---GGTCGTG--AAG-C-ATGTGTA--TAT--TC-AGAAAT--TAA---TT-T-AAG-AAA--TTCTT-TATA-T-------T-ATCGC-A-AA---AAAATCATAAG--TTC--GTAT-GGAATT---CA-TTAA---AGTC-GC-AAAACAC--TCGT-AAAG---ATT--CGTA---AGA--CAGCTTG-T-AA-ACGA-TC--TTA---CCTTGAT--GA---T-TTTCAATA--TTTTA-AAA---CC----AAT--TTATT--A-T-TCT-G-CCG-AA-TTTTCTGGCGAA--C-GCC-AAAAGGTTTTATCAT--TCGCA-AG-G---ATATTCGAC-ATAGT-GT-GAG
3 sequences could not be aligned to this reference sequence:
Unaligned ( gi|22 ): AGTTATAATCTTAAATTGTTATTGGACACGAGATAGCAAATAGCATGCTTTATTTTAAAAAGACGTCATTAAATGCAGGTTGAACTATAATAGCGAAAATACCAACTGTATGTACATATTAA
Unaligned ( gi|25 ): TTANNNNNNNNNNNNNNNNNNNNNNNNNAGAAAAGAGTATATATCTTGGTGTCATTA
Unaligned ( gi|27 ): GCNATGACATGCAGTTCTTGGATAATTTCTGT
Alignments
lowQualScore : 1 1 1 1 3333333 111 22222222222222222222 1 11111 1111 111 111 1111 1 1 11 2222222222222222222222 1 11 1111 22222222 222222 22222222 777777777777777 6666666666666666666666666 1111 1111 2222222 11 11111111 11111 111111 88888888888888888888888888888888888888 11 11 1111111111 11111 22 11111 22 22222222222 111 1 222 11 11 22
lowQualScore : 1 5 4 77 5 1 5 7 5 5 0 11 5 5 66 0 6666666 99 66 666 66666666666666666666 888 5 5 0 4 777 4 4 3 666 5 4 4 11111 9999 888888 4 3333 1 5 333 777 8 4 6666 4 4 0 4 1 2 4 22 4 4 4 4 4 8 4 00 5555555555555555555555 0 0 4 4 4 4 0 5 66 11 1 9999 1 2 66 88 4 4 55 66 777 66 666 66 2 66 5 5 66 5 00000000 333333 8 99999999 777777777777777 3 8 0 1111111111111111111111111 2222 1 6 4444 1 1 1111111 11 99999999 0 8 6 5 6 1 2 66666 9 1 999999 6 44444444444444444444444444444444444444 66 8 11 4 4 66 55 4 66 4 777 4 5555555555 4 55 33333 7777 55 3 4 4 888888 4 4 4 4 4 4 55 33333 2 55 33 4 22 99 4 55 666 3 3 55 7 66666666666 2 777 666 55 55 3 555 333 555 3 0 6 777 3 555 77 555 000 6 3 3 6 3 88 2 3 88 666 3 55 4 33 9999 4 66 4 8 4 4 3 3 55 4 4 77 88 88 4 3 666 3 4 4
lowQualScore : . . . .. . . . . . . . .. . . .. . ....... .. .. ... .................... ... . . . . ... . . . ... . . . ..... .... ...... . .... . . ... ... . . .... . . . . . . . .. . . . . . . . .. ...................... . . . . . . . . .. .. . .... . . .. .. . . .. .. ... .. ... .. . .. . . .. . ........ ...... . ........ ............... . . . ......................... .... . . .... . . ....... .. ........ . . . . . . . ..... . . ...... . ...................................... .. . .. . . .. .. . .. . ... . .......... . .. ..... .... .. . . . ...... . . . . . . .. ..... . .. .. . .. .. . .. ... . . .. . ........... . ... ... .. .. . ... ... ... . . . ... . ... .. ... ... . . . . . .. . . .. ... . .. . .. .... . .. . . . . . . .. . . .. .. .. . . ... . . .
lowQualScore : 4 7 3 99 0 7 7 1 7 0 2 00 5 0 99 0 1111111 00 99 444 44444444444444444444 888 0 0 1 4 888 4 4 3 222 7 4 4 11111 4444 999999 4 9999 1 0 888 444 9 4 1111 4 4 0 4 9 7 4 22 4 4 4 4 4 9 4 66 9999999999999999999999 1 1 4 4 4 4 8 0 44 00 4 4444 4 5 99 33 4 4 77 11 888 11 888 77 0 99 0 0 99 7 88888888 000000 0 00000000 222222222222222 2 0 8 0000000000000000000000000 1111 0 7 2222 0 5 7777777 00 22222222 6 0 7 2 7 0 5 77777 8 0 222222 7 99999999999999999999999999999999999999 99 9 88 4 4 11 00 4 11 4 222 4 4444444444 4 44 88888 0000 77 7 4 4 444444 0 0 0 0 0 0 55 88888 5 55 22 0 88 55 0 00 444 6 6 00 3 88888888888 1 222 444 00 00 6 888 000 888 3 0 7 333 1 444 99 888 888 7 3 3 7 3 66 3 6 66 444 6 55 4 99 4444 4 11 0 0 0 0 6 6 55 0 0 00 66 66 0 6 444 6 0 0
consensus : TGCTCTCCACACTA-TGCCGAATATCCTTGCGA--TTGACATAA-GA-ATGT-CATTCGC-CGCTCATTTC-G--CA-ATGAT-----TCGTATAGCT--AT--CGCTA-A----CA------T-----TCGTAC---TC-A-CTCTCAA-G---TAA-TC-GT-G-C-CGTTCG-T-GA-----GTT----TTAA---C-GAA-TATTAG----AAACATGCT-CC---TA--TA-TT-CG--C-AAGGA-A-TTTG-AAATTTCTCAA-TCCAATCGTA-A-ATAAT-T-CA-T-A-TGCA--TTNTTTAAGCCAAT-C-GTA-T--GATGGCAAGC-CA-TTTGCATTGA-TCG-TAATACA-TTCC-TTTTATAACTCGTCAC--A-CTCGCAAACGCTCGTAAG--GATT-CG-TG-AAAGGTTTGGGCAAAT--T---TTGAC--GTC--GA-TTTTTTTTCA--CGA-TT-GTC--C-ACGG-----AT-TTCA------AT-CAC--------CGGAATC--------T-----TATTATTTCCG-CTT-GGG-TTTT--T--GCTTTT-CCG-TT----GGNTTTTATTGCT-TTTCTGT----TCATNTTTTTTTTTT-------CAT--TTGG-T-CATCTTTG-TAGGACTACATGTAATT-CTGTCCGATTTCCCTCTGCC-TCGACCCCTTC-----CAAGCTTTNTTCCC------ACC-TCTC-----G-----AC---CA-GT---CAGT---G----AAAAACT--AAATT-AAAA-ACGAA-G-GT--ATT--CGA-AA--AGAAT-T-G-TT-AAAAA---AT-C---G-CAACGCAT-GCGCT-T--TTTAT-T--CGTTTTAATTCTAACTG-AT-A---C--TCGCAAGAA-TTCG-TTAGACTTGCAAC-GAT-TATC-GCAAGC-ATTCG--T-AA--GGTCGTA--AAGGC-ATTTGTAATCAT--TC-AGAAAT--TAA---TTGT-AAG-AAA--TTCTT-TATA-T-------TTATCGC-A-AA---AAAATCATAAG-GTTC--GTAT-GGAATT---CA-T-AA---AGTC-GC-AAA-CAC--TCGT-AAAG---ATT--CGTA---AGAC-CAG-TTG-T-AA-ACGA-TC--TTAAG-CCTTGAT-GGA---T-TTTCAATA--TTTTA-AAA-CCCC----AATC-TTGTT--ATT-TCT-G-ACG-AA-TTTTCT-GCGAA--C-GCC-AAAA--TTT--TCAT--TCGCA-AG-G---ATATTCGGC-ATAGT-GT-GAGAGCA
Reference ( family-2029 ) : TGCTCTCCACACTA-TGCCGAATATCCTTGCGA--TTGACATAA-GA-ATGT-CATTCGC-CGCTCATTTC-G--CA-ATGAT-----TCGTATAGCT--AT--CGCTA-A----CA------T-----TCGTAC---TC-A-CTCTCAA-G---TAA-TC-GT-G-C-CGTTCG-T-GA-----GTT----TTAA---C-GAA-TATTAG----AAACATGCT-CC---TA--TA-TT-CG--C-AAGGA-A-TTTG-AAATTTCTCAA-TCCAATCGTA-A-ATAAT-T-CA-T-A-TGCA--TTNTTTAAGCCAAT-C-GTA-T--GATGGCAAGC-CA-TTTGCATTGA-TCG-TAATACA-TTCC-TTTTATAACTCGTCAC--A-CTCGCAAACGCTCGTAAG--GATT-CG-TG-AAAGGTTTGGGCAAAT--T---TTGAC--GTC--GA-TTTTTTTTCA--CGA-TT-GTC--C-ACGG-----AT-TTCA------AT-CAC--------CGGAATC--------T-----TATTATTTCCG-CTT-GGG-TTTT--T--GCTTTT-CCG-TT----GGNTTTTATTGCT-TTTCTGT----TCATNTTTTTTTTTT-------CAT--TTGG-T-CATCTTTG-TAGGACTACATGTAATT-CTGTCCGATTTCCCTCTGCC-TCGACCCCTTC-----CAAGCTTTNTTCCC------ACC-TCTC-----G-----AC---CA-GT---CAGT---G----AAAAACT--AAATT-AAAA-ACGAA-G-GT--ATT--CGA-AA--AGAAT-T-G-TT-AAAAA---AT-C---G-CAACGCAT-GCGCT-T--TTTAT-T--CGTTTTAATTCTAACTG-AT-A---C--TCGCAAGAA-TTCG-TTAGACTTGCAAC-GAT-TATC-GCAAGC-ATTCG--T-AA--GGTCGTA--AAGGC-ATTTGTAATCAT--TC-AGAAAT--TAA---TTGT-AAG-AAA--TTCTT-TATA-T-------TTATCGC-A-AA---AAAATCATAAG-GTTC--GTAT-GGAATT---CA-T-AA---AGTC-GC-AAA-CAC--TCGT-AAAG---ATT--CGTA---AGAC-CAG-TTG-T-AA-ACGA-TC--TTAAG-CCTTGAT-GGA---T-TTTCAATA--TTTTA-AAA-CCCC----AATC-TTGTT--ATT-TCT-G-ACG-AA-TTTTCT-GCGAA--C-GCC-AAAA--TTT--TCAT--TCGCA-AG-G---ATATTCGGC-ATAGT-GT-GAGAGCA
gi|1 : CTCTACACACTA-GGCCGCATAC---TGCGAATTTGAGA-AA-GATCTGT-CATTCGC-GG----TTTCTG--CT-ATGATC----TCAAATA-CTGGAT---GTTA-G----TAGGTGGCT-----TCGTACCTCTC-A-CTAGTAA-G---TAA-TCCGT-G-G-CGTT-G-T-GGTTATTATT----ATAA---C-GAAATATTAG----AAACATGCT-CC---TA--CA-TTGCG--CTAAGGA-A-ATTGCAAAATGCTCAAATCCAATCGTATATATAAT-TTCA-TTA-TGCAA-TTTTTTAAGCCAATGC-GTA-TT-GATGGCAAGAGCA-TTTGCATTGGGTCGGTAATA-A-TTA--TTATATAGTTCGTCACGAA-CTCGCAA-CATTCGTAAG--GATTGCG-TG-AAAGGTT--GGCAAAT--TGTTTTGAT--GTC--AA-ATTTTT------CG--TC-GTC--CGACGG-----GC-TTTA------AT-CAC--------CAGAATCCGGAATT-T-----TATTATTTC-G-CTTCGGG-CTTTATT--GCTTTGACTG-TTTCATGGTTTTTATTATT-CTTCTTTATCTTTATTTTTTTTTTTTTTTTTTACAT--TTGGGT-CAA--TTG-TAG------ATG-AGCT-C----CGATTTCTC-----C-TC-ACCC----------AAGTTTTTCGCTC------ACG-TC-------------AG---CA--T---AAGT---G----TTG--TT--CAATT-AACA--TGAA-G-TT--GT---CGA-AA---GAAT-T---TT-AAAAAT--GT-C---G---ACGCTA-GCCTC-C--TTTATATGGCGTTTT---TCTAATTG-ATCA---C--TCG-AAGAA-TTCG-TTAGACT-GCAAC-AAT-C-TC-GCA-GC-ATTCG--TGAA--GGTCGTG--AAG-C-ATGTGTA--TAT--TC-ACAAAT--TAA---TTGT-AAGTTAA--TCTTT-TATA-T-------TTATCGC---AA---AAAATCATAAG-GTTC--GTGA-GGAATT---CT-T-AA---AGTC-GCAAAA-CAC--TCGT-AAAG---ATT--CGTA---AGA--CAGCTTG-T--A-ACGA-TCGATTA----CTTGAT-GAT---C-TTTCAATA--TTTTA-AAA--CTC----AATT-CTATT--ATT---T-GCACG-AA-TTTCGT-GCGAA--A-GCC-AAAAGGTTT--TTATCATAG-A-AG-GAAAATATTCGACTATAGT-GT-GA
gi|10 : TGCTCTC-ACACTA-TGCCGAATATCCTTGCGA--TTGACATAA-GA-ATGT-CATTCGC-CGCTCATT-C-G--CA-ATGAT------CGTATAGCT--AT--CGCTAGA----CA------T-----TCGTAC---TC-A-CTCTCAA-G---TAA-TC-GTCG-C-CGTTCG-T-GT-----GTT----TTAA---C-GAA-TATTAG----AAACATGCT-CC---TAA-TA-TT-CG--C-AAGGA-A-TT-G-AAATT-CTCAA-TCCAATCGTA-A-ATAAT-T-CA-T-A-TGCA--TTC-TTAAGCCAAT-C-GTATT--GATGGCAAGC-CA-TTTGCATTGA-TCG-TAATACA-TTCT-TTTTAT-ACTCGTCACA-A-CTCGCAAACACTCGTAAG--GATT-CA-CG--AAGGTTTGGACAAAT--T---TTGAC--GTC--AA-TTTTa
gi|11 : tacTACTGTCCACACTA-TGCCGAATATCCTTCCGA--T-GACATAG-AAGATGT-CATTCGA-CGCTCATT-C-G--CA-ATGA-------CGTATAAAT--AT--CGCTA-A----CA------T-----TCGTAC---TC-A-CTCTCAA-G---TAGTTC-GT-T-G-CGTTCGTT-GA-----TCT----TTAA---C--AC-TGATAGT---AAATAT-CT-CCA--CG--TA-TT-CG-----AGGA-A--TTG-GAATTGCTCAA-T--AATCGTA-A-ATAAT-T-CA-T-A-TGCA--TTATT-------AT-C-GTA-CA-GATGGC--GC-CA-TTTGCAC--A-TCG-TAATA-A-TTCC-TTTTATAACTCGTCACA-A-CTCGC-AACGCTC-TAGG--AATT--G-TGAAAAGGTTTGGGCAAAT--T---TTGAC--GTC--GA--ATTATTTCA--CGATTT-GTC--C-
gi|12 : aTACTGTCCACACTA-TGCCGAATATCCTTCCGA--T-GACATAAAGA-ATATTCATTCGC-CGCTCATT-C-G--CACATGA-------CGTATAAAT--AT---GCTAGA----CA------T-----TCGTAC---TC-A-CTCTCAATG---TA--TC-GT-G-C--GTTCG-T-GA-----TCT----TTAA---C---A-TAT-AG----AATTAT-CT-CCACGTA---A-TT-CG----AAGGA-A-TTGG-AAATT-CTCAA-TC-AAT-GTA-A-ATAAT-T-CA-T-A-TGCA--TTATT-------AT-C-GTA-CAGGATGGCAG---CA-TT-GCACTGA-TCG-TAATACAATTCCATTTTATA-CTCG-CAC--A-CTCGCAAACGCTC-TA-G--GATT-CG-TG-AAAAGGTTGGGCAAAT--T---TTGAC--GTC--GA-TATTATTTCA--ACA-TT-GTC--C-
gi|13 : aTTT-CCT-TT----GAGTTTTATTGCT-TTTCTGG----TCATTTTTTTTTCTC-------CAT--TTG--------TTGG-TAGGACTACATGTAATT-CTGTTCGATTTCCCTCTGCC-TCAAACCCTTC-----CAA-CTTTGTTTCC------ACC-TCTC-----G-----ACATACATGT---CAGTC--A----AAAAACT--AAATT-AAAA-ATGAA-T-GT--ATT--CGA-GA--AGAATGT-G-TT-AAAAA---TT-C---A-CAACGCAT-GCGC--T--TTTAT-T--CATTTT-ATTCTAAATG-AC-A---C--TCGCAAGAATTTCGTTTAGACTCGCATC-GAT-TATC-GCAAGC-A-TCG--T-AAGCGGTGGTA--AA-GC-AGTTGTA
gi|14 : ttagtaAAT--TAA---TTGT-AAG-AAA--TTCTT-TATA-TTATCTGATTATTGC---AA---AAAATCACAAG-GTTC--GTAT-GGAATTTCATA-T-AA---AGTC-GC-AAA-CAC--ACGTGAAAGATAATT--GGTAAAGAAACACAG-TTGAT-AATACGA-TC--TTAAGCCCTTGAT-TGA---T-TTTCAATG--TTTAATAAA-CCCT----AATCATTGTTACATTGTCTGG-ACGAAA-TTTTCT-GCGAACCC-GCCAAAAA--TTT--TCATG-TCGCA-AG-G---ATATTCGGC-ATAGTAGT-GAGAt
gi|15 : --AAATT-AAAA--CGAA-G-GT--ATTT-CAG-AA--AGAAT-T-G-TT-AAAAA---AT-C---G-CAACGCA---CGTT-T--TATCT-T--CGTTTTA--TCTA-CTGGAT-A---TCGTCACGATAA-TTC--TTA-ACTTGCAAC-AATATA-A-GCAAACCATCAT--T-AG--GGTC-TA--AAGGCCATTTGTA-TCATA-TC-AGAAAT--TAA---TTGT-AAG-AAA--TCTTT-GATA-T-------T-ATTGC-A-AA---AAAATCACAAG-GTTC--GTAT-GGAATT---TA-TCAA---AGTC-GCAAAA-CAC--TCGT-AAAG---AT
gi|16 : aATCAT--TC-GCAAGT--TAA---TTGT-AAG-AAA--TTCTTGTATA---------TTATTGC-A-AA---AAAATCATAAG-GTTC--GTAT-GGAATT---CATT-AA---ACTC-GC-AAACCAC--TCGT-AAAG---ATT--CGTA---AGA--CAA-TCG-T-AA-ACGA-TC--TTAAG-CCTTGGT--GA---T-TTTTGATA--TTTTA-AAC-ACCC----AATC-TTATT--ATT-TCT-G-ACA-AA-TTTTCT-GCGAA--C-GCT-AACAT-TTT--TCAT--TCGCA-AG-G---ATATTCGGC-ACAGT-GT-GAGAGC
gi|17 : CAAGAA-TTCG-TTAGACTTGAAAC-AAT-TACC-GCAATC-ATTCG--T-AAG-GGTCGTA--AAGGC-ATTTGT-ATCAG--TC-AGAAAT--TAA---TTGT-AAG-ACA--TT-TT-TATA-T-------CTATTGCAA-AA---AAAATCATAAG-GTTC--GTAT-GGAATT---CATT-AA---AGTC-GCAAAA-CAC--TCGT-AAAG---ATT--CGTA---AGA--CAA-TTG-T-AA-ACGA-TC--ATAAG-C----AA-GGA---T-ATTC
gi|17 : --TCAT--AAGCA-AG-G---ATATTCGGC-ATAGT-GT-GAAAGCAggcatagtgtgaaagca
gi|18 : caagaattcgttagacttgaaacaattaccgcaatcattcgtaagggtcgtaaaggcatttgtatcagtcagaaattaattgtaagacatttttatatctattgcaaaaaaaatcataaggttcgtatggaattcattaaagtcgcaaaacactcgtaaagattcgtaagacaattgtaaacga-A-AA---AAAATCATAAG--TTC--GTAT-GAA--T---CG-T-TA---ACTC-G--AAA-CAC---CG---AAA---ATT--CATA---AGAC--AG-TTG-T-AA-ACTA-TC--TTAAG-CCTTGGT---A---T-TTTT-ATA--TTTTA-AAA--CCC----AATC-TTA-T--ATT-TCTGG-ACA-AA-TTTTCT-GCGAC--CAGCT-AACA--TTT--TCAT--
gi|19 : aTGCTCTC-ACACTA-TGCCTAATATCCTTGTGA--TTGACATAA-GA-ATGT-CATTTCC-CGTTCA-GTC-G--CA-ATGA------TCTTATAGGT--AT--TGCTA-GT---TA------T-----TCGTAC---TC-A-ATCTTAA-G---TAA-TC-GT-G-CTCGTTTG-T-GA-----GTT----TTAA---C-GAA-TACTAG----AAACATGCcaca
gi|2 : tacTGCTCTCCACACTAGTGCTGAATATCCTT-CGA--TTGACATAA-GA-ATGC-CATTCGC-CGCTCATTTC-G--CA-ACGAT-----TCGT-TAGCT--AT--CGCTA-A----CA------T-----TCGTAC---TC-A-CTC-CAA-G---CAA-TC-GTCG-C-CGTTCA-T-GA-----GTT----TTAA-----GAA-TATTA-----AAACATGCTGCC---TA--TA-TT-CG--CAAAGGA-ATTTTG-AAATTTCTCAA-T-CAATCGTA-A-ATAA--T-CATT-A-TGCA--TTCTTTAAGCCAAT-C-GTA-T--GATGGCAAGC-CA-TTTGCATTGA-TCG-TAATACA-TTCC-TTTTATTACTCGTCAC--A-CT-GCAAACACTCGTAAG--GATT-CGTTG-AAAGGTTTGGGCAAAT--T---TTGAC--GTC--AA-TTTTTTTCCA--CGA-TT-GTC--C-ACGG-----AT-TTCA------AT-CAT--------CGGAAT---------T-----TATTATTTCCG-CTT-GGGTTTTT--T--GCTTTT-CTG-TT----GGTTTTTGTTGTTGTTTTTGT----TGTTGTTTTTTTTTT-------CAT--TTGG-T-CATCTTTG-TAGGAATAAA-GTAATT-CTGT-CGATTT-CCTCTGCC-TTGACCCCTTCGGCTTCAAGCTTTTTTCCC------ACC-TCT-------------C---CA-G----CAGT---G----AAAAACT--AAATT-AAAA-ACGAA-T-GT--ATT--CG--AT--AGATT-T-GTTT-AAAAA---ATAC---G-CAACG-AT-TTGCTGT--TTTAT-T--CGTTTTAATTCTAACTG-AT-AGTCC--TCGCAAGAA-TTCG-TTAAACTTGCGACTGAT-TATC-ACAAGC-ATTCA--T-AA--GGTCGTA--AAGGT-ATTTGTAATCAT--TC-AGAAAT--TAA---TTGT-AAG-AAAGTTTCTT-TATAGT-------TTATTGC-ATAA---AAAA----AA---------------AATC---C-----A---AGTC-GC-AAA-CAC--TCGT-AAAG---ATT--GGTA---AGAC-CAG-TTG-T-AA-ACGAGTCT-TTATG-CCTTGATGGGA---T-TTTCAATA--TTTAG-AAACCCCC----AATC-TTGTT--ATT-TCT-G-ACG-AA-TTTTCT-GTGAA--C-GGC-CAAA--TTT--TCAT--TCGCA-AG-G---ATATTCGGC-ATAGT-GT-GAGAGCA
gi|20 : GT-AAAG---ATT--CGTA---AGAC--AG-TTG-T-AA-ACGA-TC--TTAAG-CCTTGAT-G-A---T-TATCAATA--TTTTA-AAA-CCAC----AATC-TTATT--ATT-TCT-G-ACG-AA-TTTTCT-GCGAA--C-GCC-AAAAT-TTT--TCAT--TCGCA-AG-G---ATATTCGGC-ATAGT-GT-GAGAG
gi|21 : T---CA-T-AA---AGTC-GC-AAA-CAC--TCGT-AAAG---GATAATGTA---AGAC-AAG-TTG-T-AA-ACGA-TC--TTAAG-CCTTGAT-GAAAGCT-TTTCAATACTCTTTA-AAA-CCCCAATAAATC-TTGTT--ATT-TCT-G-ACG-AA-TTTTCT-g
gi|23 : a-AAAG---ATT--CGTA---AGAC--AG-TTG-T-AA-ACGA-TC--GTAAG-CATGGCT--GA---T-TTTCAATA--TTTTaat
gi|23 : A-TTTTCT-GCGAA--C-GTC-AAAAC-TTT--TCAT--TCGCA-AG-G---ATATTCGGC-ATAGT-GT-GAGAGCActgcgaacgtcaaaacttttcattcgcaaggatattcggcatagtgtgagagcagc
gi|24 : aaagattcgtaagacagttgtaaacgatcgtaagcatggctgattttcaatT-TCT-G-ACA-AAATTTTCT-ACGAA--A-GCC-AAAAT-TTT--TCAT--TCGCAGAG-G---ATATTC-GC-ATAGT-GTGGAGAGgc
gi|26 : T-CG-TG-AAAGGTTTGGGCAAAT--T---TTGAC--GTC--GA-TTTATTTTCA--CGA-TT-GTC--
gi|28 : -G---ATATTCGGC-ATAGT-GT-GAGAGCA
gi|3 : A-G---TAA-TC-GT-GGT-CGTTGG-T-GA-----GTT----TTAA---C-GAA-TATTAA----AAATATGCT-CA---TA--AAATT-CG--C-GAGAA-A-TT-G-AAATGT-TCAA-TCCAATTGTA-A-ATAAT-T-CA-T-A-T--------------------------T--GATGGCAAGC-CA-TTTGCATTGA-TTT-CAATACA-TTCC-TTATATA-------------CTCGAACACACTCGTAAGAAGA----G-TG-AAAG-TTGGGGCAAATGTT---TTGACATGTC--AAATTTTTTTTCA--CGA-TT-GTC--C-ACGG-----AT-TTCA------AT-CAC--------CGGAATCATCGGAATT-----TATTATTTCTG-CTT--------------------------T----GGATTTTATTGCT-TTTCTGT----TCATATTTT-------------CAT--TTGG-T-CATCTTTGGTAGGACTACATGTAATT-CTGTCCGATCTCCCTCTGTC-CGGACCCCTTC-----CA-GCGTTGTTCCC------ACC-TCAC-----GGT---AT---GA-GTTGTCAGT---TC---AAAAACT--AAATT-CAAA-ATGAA-G-GT--ATT--CGA-AA--ATAAT-T-G-TTTAAAAA---AT-C---C-CAACGCAT-GCGCT-T--TT-AT-T--TGTTTTA-TTCTAACTG-AC-A---C--TCGTAAGGA-TTCG-TTAGATTCGCAAC-GAT-TATC-GCAAGC-ATTCG--T-A--------TA----------TTATTGCCCC--CCAAAAAATCATAAGGTTCGT-ATG-GAA--TTCGT-TAAA-C----------TCGC-A-AA---TAACTCGTAAA-G-------------ATT---CA-T-AAGACAGTT-GT-AAA-gcatagg
gi|4 : -TT-CG--C-AAAGA-A-TTTA-AA--TTCTCAA-CCCAATCCTA-A-ATGAT-T-CA-T-A-TGCA--TTG-TTAAGGCAAT-T-GTA-TG-GATGATAAAC-CA-TGTGCATTGA-TGG-TAAT
gi|4 : aaacTT-CCGCTT----GGGTTTTATTGAT-ATTATGT----TCATTTTATTTTGGT-------CATCTTTGG-TACAT----G-CAGGGCTACATGTAATT-CTGTCCGGTTTCCCTCTGCC-TCGAACTATTC-----CA-GATTTGTTTCC------TCC-CTTC-----GGTATGAT---CT-TT---TAGT---TC---AAAAACT--AAATT-CAAA-ATGAA-G-GT--ATT--CGA-GA--AGAAT-T-C-TT-AAGAC---AT-T---G-CAATGCAT-ATGC--T--TTTAT-T--CGTTTT-ATTCTGA-----------------CAAAAA-TTCG-TTAGACTTGCAAC-GAT-TATC-GCAAGC-ATTCT--TAAA--GATCGTA--AAAGC-ACTTGT-----T--T------------A---TTGT-AAG-AAA--TTCTTGTATA-gataattcgcaaggttgttttatggtgatgttttttggtgttgatggagagtgtggcggtatagcaattggtgtgatataattgttagatatattattggaaccatcgaaagtattattccgcttgggttttattgatattatgttcattttattttggtcatctttggtacatgcagggctacatgtaattctgtccggtttccctctgcctcgaactattccagatttgtttcctcccttcggtatgatcttttagttcaaaaactaaattcaaaatgaaggtattcgagaagaattcttaagacattgcaatgcatatgcttttattcgttttattctgacaaaaattcgttagacttgcaacgattatcgcaagcattcttaaagatcgtaaaagcacttgtttattgtaagaaattcttgtata
gi|5 : aaacttcgcaaagaatttaaattctcaacccaatcctaaatgattcatatgcattgttaaggcaattgtatggatgataaaccatgtgcattgatggtaatgataattcgcaaggttgttttatggtgatgttttttggtgttgatggagagtgtggcggtatagcaattggtgtgatataattgttagatatattattggaaccatcgaaagtattaTGCTCTC-ACACTA-TGCCCAATATCCT-GCGA--TTGACGAAA-GATCTGT-CATTCCG-CGTTT-CCTC-GACTA-ATGAT------CGTAAA--T--ATA-CGCTT-A----GA------TATGGCTTGTAC---TCTA-CTATGAA-G---TAA-TC-GT-G-C-CGTT-G-T-GA-----GTTATTATTAA---C-GAA-TATTAG----AAACATGCT-CC---TA--AAATT-CG--C-AAGGA-A-TT-G-AAATG-CTCAA-TCCAATCGTA-A-ATAAT-T-CA-TTA-TGCA--TT-TTTAAGCCAAT-CCGTA-TT-GATG-CAAGC--A-TTTGCATTGG-TCG-TAATA-A-TTCA-TAT-ATAGTTCGTCAC--AATTCGCAAACATTCGTAAG--GATT-CG-T--AAAGGTT--GGCAATT--T---TTGAT--GTC--AA-ATTTTTT-CAGTCGG-T--GTC--C-ACGG-----CT-TTCA------AT-CACCAGAATCACGGAATT--------T-----TATTATTCTCG-C---------------------------TT----GGCTTTTATTGCT-TTACTGT----TCATGTTTTTTTTTT-------C
gi|6 : atacTCCGCACGCTCACT-C-G--CAGATGATGGTTATGGCATAGCT--ATACCGCTT-AGACTCA------T-----TCGTAC---TC-ATCTCTCAA-GTATTAG-TC-GTGG-C-CGTTCG-TCGA-----GTT----TAAAGGGCGGAA-TATTAGATCTAGACATGCG-CC---TAATTA-TT-TAGCC-AAGGACA-TTTG-CA--TTCTCAT-TCAAATCTCG-A-ATAATAT-CA-T-ATTGCATGTCCTCTAATTCA------------GAT------C-CATTTTGCTTTGA-TCG----TATG-TTTC-TTTttctt
gi|6 : TCGTAAT--GATT--G-TG-AA----TT-------T--T---TT-AC--GTTCAAA-TTTTTTTTCA--CGA-TTTGTCGCT-ACGATTTTTATATTCACTGGATATGCAT--------CGGAATT--------GGGGGGTATCATTTCCGTCTT-GGG-TTTT--TATGCTTTT-CTG-TT----Gatctacccaatatgataagataactttgtatttatatgtggctgacgatctttttcgtaatgattgtgaattttttacgttcaaattttttttcacgatttgtcgctacgatttttatattcactggatatgcatcggaattggggggtatcatttccgtcttgggtttttatgcttttctgttgccc
gi|7 : tccgcacgctcactcgcagatgatggttatggcatagctataccgcttagactcattcgtactcatctctcaagtattagtcgtggccgttcgtcgagtttaaagggcggaatattagatctagacatgcgcctaattatttagccaaggacatttgcattctcattcaaatctcgaataatatcatattgcatgtcctctaattcagatccattttgctttgatcgtatgtttctttatctacccaatatgataagataactttgtatttatatgtggctgacgatcttttTGTAATTTCTATCCGATTTCTCTCTGCCCTCGACCCCTTC-----CAGGCTCCTCCCCCCCCCCCACCCTCCCAGCATG-----AC---TT-GT---TAATTTAGTTCCAAAAACTTCAAATCCAAAACACGAC-GCGT--AATGGCGA-AACAAGCAT-T-G-TT-ACAAACACAC-CTCCG-CAACGCATTGC-CT-TCCTTTAT-T--CATTTTA-TTCTAATTG-AT-A---C--TCACAAGAA-TTCG-TTAGACTTGCAAC-AAT-TATC-GCAAGC-ATCCG--T-AA--AGTCGTGTCAAAGC-ATTTGT-ATCAT--TC-AGAAAT--AAA---TCGTAAAG-AAA--TTATT-TATA----------TATGGC-A-AAAACAAAATCATAAGCGTTCGTGTGT-GGAATT---CATT-AA---AGTC-GC-AAA--GC-----T-AAAG---AGT--CGTA---AGA--CAG-TTG-T-AACACGA-Tccc
gi|8 : T---G----AAAAA-T--AAATT-AAAA--CGAA-G-GT--ATTT-CGA-AA--AGAAT-TTG-TT-AAAAA---AT-----G-CAACGCAC-GTG------TTTAT-T--CGTTTTA-TTCTAACTG-AT-A---C--ACGCCAAGA-TTCG-TTAGACTTGCAAC-AAG-TATAAGCAACC-AT-CAATT-AG--GGTC-TA--A-GGC-ATTTGTA-TCATATTC-AGAA-T--TAA---TTGC-TAA-AAA--TTCTT-TATA-T-------T-ATTGC-A-AA---AAAATCACAAG-GT----GTATAGGAATT---TA-TCAA---AGTCTGC-AAA--ACCATCGT--AAG---ATTG-CGAA---A----CAG-TTG-TAAA-ACGA-TC--TTAAG-CCTTGAT--GA---TGTTTCAATA--TTTTA-AAA-CACC-----ATC-TTGTT--ATA-TCT-G-ACG-AA-TTTTCT-GCGAA--C-GCC---AA--TTTA-TCAT--TCGAA-CGAG---ATATTC-GC-ATAGtct
gi|9 : AATTCAAAA-ACGAAAG-GTTGATT--CGACAA--AGAAT-T-G-TT-AAAAA----T-C---GTCGACGC-T-ATGCT-C--TTTAG----CGTTTTTATTCTAATTG-AT-A---C--TCGCAAGA--TTCG-TTAGATCTGCAAC-AAT-CATC-GCAAGC-ATTCG--T-G---GGTCGTG--AAG-C-ATGTGTA--TAT--TC-AGAAAT--TAA---TT-T-AAG-AAA--TTCTT-TATA-T-------T-ATCGC-A-AA---AAAATCATAAG--TTC--GTAT-GGAATT---CA-TTAA---AGTC-GC-AAAACAC--TCGT-AAAG---ATT--CGTA---AGA--CAGCTTG-T-AA-ACGA-TC--TTA---CCTTGAT--GA---T-TTTCAATA--TTTTA-AAA---CC----AAT--TTATT--A-T-TCT-G-CCG-AA-TTTTCTGGCGAA--C-GCC-AAAAGGTTTTATCAT--TCGCA-AG-G---ATATTCGAC-ATAGT-GT-GAG
blockSeqs : C G G . T T A G T A AT T . AC C TGGTTAT GC . ACC AGATATGGC . T T T TAT T . C CT C T C . ATTA GGGCGG . ATCT G G ACG ATT A . GCC C T T . A G . CC . . A . T T T TG TTTAAGCCAATCCGTATT . T . . C A CA AA T AA A G AA C T A TG GT . AT CAA AT T GT T T GC . TTTTTATA CTGGAT G CAGAATCA CATCGGAATT C T GGGTTTTTATGCTTTTCTG . G G . T C . CT TCATCT G T T C A C GGCTT A G CCCCCC C CCAGCATGACTTGTTAATTTAGTTCC TC C CA A C TG GG C CA G GT T CACACCTCC T TT TTCC T AA A G . GTCC T T T A A C AT AAGC G TC GG C AA AT A CA GGT A . GT G TTATCTGATT T AA AAC CG GT A TCA TC GAC T A C CAT G ATA AA AAG CAC C A A T G T A C GG AGC G CT T CC AATA A AC G G . A A G CC A A GG TA G G A . . A G
blockSeqs : C . C . T T . T . . AT T . . G TT AA . AC AGACTCAT . . . . . . . C GT C . . . . CG . T G . A AT A . CA . . G . A T . CC . . . . . . . . CTTAAGCCAATCGTATT . . . . C . T TA T AA G G . C . . TG . . . A T T . . . . . AT . . . TGGGGGG T . GGGTTTTTTGCTTTTCTG . T . . G T . . TCATCT . . C . G C . A T . . ACGGTATGAGTTGTCAGTTC . C A . . . T . . . TG . ATAC . T TGT T TA C . . TCG . . . . . . . AAG G . GG . TG A . . . . . . G GTTT T AT . G . . . TT . . A A A . . G . CC . . . C . . A . T . . . . C . . . . G . . . . . . . T A . . . . . . .
blockSeqs : C . C . T T . . . . AT T . . . T AA . C GACAT . . . . . . . G C C . . . . CG . . G . . T . . C . . T . A T . CC . . . . . . . . CTTTAAGCCAATCGTAT . . . . C . C AG T AA G G . C . . TG . . . G T C . . . . . AT . . . TT C . . . A . . A G . . TACAT . . C . G C . G G . . TCGGTATGATCTTTTAGTTC . . A . . . T . . . G . TTC . T TT T A C . . C . . . . . . . AAA G . GG . A . . . . . . . . TCT T A . G . . . TT . . . . T . . . . CA . . . . . . A . G . . . . A . . . . . . . . . . . . T . . . . . . . .
blockSeqs : . . G . T T . . . . AT . . . . T GG . C GACAT . . . . . . . . G T . . . . CG . . G . . T . . C . . T . A T . CC . . . . . . . . GTTAAGGCAATTGTATG . . . . C . C A T A A G . C . . TG . . . G T T . . . . . CT . . . T C . . . G . . T T . . T . . C . G A . . G . . TCGACATACATGTCAGTCA . . A . . . . . . . G . ATC . T TT T A C . . C . . . . . . . AG G . AG . A . . . . . . . . TT T A . G . . . TT . . . . T . . . . C . . . . . . A . G . . . . C . . . . . . . . . . . . C . . . . . . . .
blockSeqs : . . G . . T . . . . AC . . . . T GC . T GTTAT . . . . . . . . C C . . . . CG . . G . . A . . C . . T . A T . CA . . . . . . . . ATTATCGTACAG . . . . T . C A . A A G . C . . TG . . . A T T . . . . . . C . . G . . . . . G C . . T . . TCCAGCAGTG . . A . . . . . . . G . ATC . T TC T A T . . C . . . . . . . AA G . AG . A . . . . . . . . TT T A . G . . . TC . . . . T . . . . C . . . . . . T . G . . . . C . . . . . . . . . . . . T . . . . . . . .
blockSeqs : . . . . . A . . . . A . . . . . GC . C ACAT . . . . . . . . C G . . . . C . . G . . A . . C . . . . A . . C . . . . . . . . ATTATCGTACA . . . . . . A A . . A . . . . . GG . . . G A T . . . . . . . . A . . . . . . . C . ATT . C T T A C . . C . . . . . . . AA G . GG . A . . . . . . . . TT C A . G . . . TT . . . . T . . . . C . . . . . . A . . . . . . C . . . . . . . . . . . . . . . . . . . . .
blockSeqs : . C . . . . . . . . ACAT . . . . . . . . C C . . . . C . . . . . . . . . . . . . . . . C . . . . . . . . CTCTAATTCA . . . . . . C . . . . . T . . . A T . . . . . . . . . . . . . . . G . AT . T T T A T . . C . . . . . . . AG . . G . A . . . . . . . . TT G A . G . . . T . . . . T . . . . C . . . . . . A . . . . . . . . . . . . . . . . . . . . . . . . . . . .
blockSeqs : . . . . . C . . . . . G . . . . . . . . . . . . . . . . . . . . . . T . . . . . . . . . . . A . . . . . . . . . . G . TC . . . . A . . . . . . . . . . . A . . G . . . . . . . . . . C T A . . . . . T . . . . T . . . . C . . . . . . A . . . . . . . . . . . . . . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . G . . . . . . . . . . . . T C A . . . . . T . . . . . . . . . C . . . . . . A . . . . . . . . . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . . T . . . . . . . . . C . . . . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . C . . . . .
blockSeqs : . .
blockSeqCons : ** AT T****** GN ** C** GACAT*************** *** ***** C*** ** NTTAAGCAATCGTACG****** C* AA** C* TG *** TT************* ************************* **** **** ******* TACT**** TCGGCATGACTTGTCAGTTN****************** A* G** ATC******* T*** A* AA*** GG TT********* A** TT* ** G* C* ** ** ***
originalCons : TGCTCTCCACACTA-TGCCGAATATCCTTGCGA--TTGACATAA-GA-ATGT-CATTCGC-CGCTCATTTC-G--CA-ATGAT-----TCGTATAGCT--AT--CGCTA-A----CA------T-----TCGTAC---TC-A-CTCTCAA-G---TAA-TC-GT-G-C-CGTTCG-T-GA-----GTT----TTAA---C-GAA-TATTAG----AAACATGCT-CC---TA--TA-TT-CG--C-AAGGA-A-TTTG-AAATTTCTCAA-TCCAATCGTA-A-ATAAT-T-CA-T-A-TGCA--TTNTTTAAGCCAAT-C-GTA-T--GATGGCAAGC-CA-TTTGCATTGA-TCG-TAATACA-TTCC-TTTTATAACTCGTCAC--A-CTCGCAAACGCTCGTAAG--GATT-CG-TG-AAAGGTTTGGGCAAAT--T---TTGAC--GTC--GA-TTTTTTTTCA--CGA-TT-GTC--C-ACGG-----AT-TTCA------AT-CAC--------CGGAATC--------T-----TATTATTTCCG-CTT-GGG-TTTT--T--GCTTTT-CCG-TT----GGNTTTTATTGCT-TTTCTGT----TCATNTTTTTTTTTT-------CAT--TTGG-T-CATCTTTG-TAGGACTACATGTAATT-CTGTCCGATTTCCCTCTGCC-TCGACCCCTTC-----CAAGCTTTNTTCCC------ACC-TCTC-----G-----AC---CA-GT---CAGT---G----AAAAACT--AAATT-AAAA-ACGAA-G-GT--ATT--CGA-AA--AGAAT-T-G-TT-AAAAA---AT-C---G-CAACGCAT-GCGCT-T--TTTAT-T--CGTTTTAATTCTAACTG-AT-A---C--TCGCAAGAA-TTCG-TTAGACTTGCAAC-GAT-TATC-GCAAGC-ATTCG--T-AA--GGTCGTA--AAGGC-ATTTGTAATCAT--TC-AGAAAT--TAA---TTGT-AAG-AAA--TTCTT-TATA-T-------TTATCGC-A-AA---AAAATCATAAG-GTTC--GTAT-GGAATT---CA-T-AA---AGTC-GC-AAA-CAC--TCGT-AAAG---ATT--CGTA---AGAC-CAG-TTG-T-AA-ACGA-TC--TTAAG-CCTTGAT-GGA---T-TTTCAATA--TTTTA-AAA-CCCC----AATC-TTGTT--ATT-TCT-G-ACG-AA-TTTTCT-GCGAA--C-GCC-AAAA--TTT--TCAT--TCGCA-AG-G---ATATTCGGC-ATAGT-GT-GAGAGCA
finalCons : TGCTCTCCACACTA-TGCCGAATATCCTTGCGA--TTGACATAA-GA-ATGT-CATTCGC-CGCTCATTTC-G--CA-ATGAT------CGTATAGNT--ATC--GCTAGACAT---------------TCGTAC---TC-A-CTCTCAA-G---TAA-TC-GT-G-C-CGTTCG-T-GA-----GTT----TTAA---C-GAA-TATTAG----AAACATGCT-CC---TA--TA-TT-CGC---AAGGA-A-TTTG-AAATTTCTCAA-TCCAATCGTA-A-ATAAT-T-CA-T-A-TGCA--TTNTTAAGCAATCGTACG------GATGGCAAGC-CA-TTTGCATTGA-TCG-TAATACA-TTCC-TTTTATAACTCGTCACAA--CTCGCAAACGCTCGTAAG--GATTC-G-TG-AAAGGTTTGGGCAAAT--T---TTGAC--GTC--GA-TTTTTTTTCA--CGA-TT-GTC--C-ACGG-----AT-TTCA------AT-CAC--------CGGAATTT-------------TATTATTTCCG-CTT-------------------------TT----GGNTTTTATTGCT-TTTCTGT----TCATNTTTTTTTTTT-------CAT--TTGGTACT----TTG-TAGGACTACATGTAATT-CTGTCCGATTTCCCTCTGCC-TCGACCCCTTC-----CAAGCTTTNTTCCC------ACC-TCTCGGCATGACTTGTCAGTTN------------------AAAAACT--AAATT-AAAAA-CGAA-G-GT--ATT--CGA-AA--AGAAT-TG--TT-AAAAAATC-------G-CAACGCAT-GCGCT-T--TTTATT---CGTTTTA-TTCTAACTG-AT-A---C--TCGCAAGAA-TTCG-TTAGACTTGCAAC-GAT-TATC-GCAAGC-ATTCG--TAA---GGTCGTA--AAGGC-ATTTGTAATCAT--TC-AGAAAT--TAA---TTGT-AAG-AAA--TTCTT-TATATT---------ATCGCA--AA---AAAATCATAAG-GTTC--GTAT-GGAATT---CATT-AA---AGTC-GC-AAA-CAC--TCGT-AAAG---ATT--CGTA---AGAC-CAG-TTG-T-AA-ACGA-TC--TTAAG-CCTTGATG-GA---T-TTTCAATA--TTTTA-AAAC-CCC----AATC-TTGTT--ATT-TCT-G-ACG-AA-TTTTCT-GCGAA--C-GCC-AAAA--TTT--TCAT--TCGCA-AG-G---ATATTCGGC-ATAGT-GT-GAGAGCA
3 sequences could not be aligned to this reference sequence:
Unaligned ( gi|22 ): AGTTATAATCTTAAATTGTTATTGGACACGAGATAGCAAATAGCATGCTTTATTTTAAAAAGACGTCATTAAATGCAGGTTGAACTATAATAGCGAAAATACCAACTGTATGTACATATTAA
Unaligned ( gi|25 ): TTANNNNNNNNNNNNNNNNNNNNNNNNNAGAAAAGAGTATATATCTTGGTGTCATTA
Unaligned ( gi|27 ): GCNATGACATGCAGTTCTTGGATAATTTCTGT
Alignments
lowQualScore : 1 1 1111 1 1111111 11111111 1 1 11111 1111 111111111 1111 1 11 33333333 111 1 11 22222222 111111 3333333333333333 3333333333333333 8888888888888888888888888888888888888888888888888 1111 11 3333333 11 22222222222222222 11111 1111111 11 11 1111111 11111 1111111 222222 111111111 1 222 11 11 22
lowQualScore : 1 5 4 77 1 5 5 1 5 5 0 2222 5 66 0 2222222 66666666 1 777 0 2 66 66 888 888 5 5 0 4 777 4 4 3 666 5 4 4 11111 9999 888888 4 3333 1 5 666666666 8 4 1111 4 4 0 4 4 22 4 4 6 4 4 555 4 8 4 66 4 2 99999999 8 000 1 555 4 4 4 0 5 66 0 11 5 5 5 0 1 1 2 66 88 4 4 55 66 777 66 666 99 66 5 5 66 5 00000000 999999 6 5555555555555555 2222222222222222 0 9999999999999999999999999999999999999999999999999 1 5 2222 1 1 11 1111111 5 11 0 6 6 1 6 1 2 11111111111111111 1 6 6 3 00000 7777777 0 66 4 4 11 4 4 66 55 4 66 4 777 4 4 6666666 4 4 55 33333 7777 8 3 4 4 777777 3 3 3 44 3 444 3 55 7 1111111 1 55 33 4 333333 4 4 55 666 3 3 55 7 6666 4 555555555 3 3 666 3 3 55 4 4 1 44 3 4 3 777 3 555 77 555 000 6 3 3 6 3 88 2 3 88 666 3 55 4 33 9999 4 66 4 8 4 4 3 3 55 4 4 77 88 88 4 3 666 3 4 4
lowQualScore : . . . .. . . . . . . . .... . .. . ....... ........ . ... . . .. .. ... ... . . . . ... . . . ... . . . ..... .... ...... . .... . . ......... . . .... . . . . . .. . . . . . ... . . . .. . . ........ . ... . ... . . . . . .. . .. . . . . . . . .. .. . . .. .. ... .. ... .. .. . . .. . ........ ...... . ................ ................ . ................................................. . . .... . . .. ....... . .. . . . . . . . ................. . . . . ..... ....... . .. . . .. . . .. .. . .. . ... . . ....... . . .. ..... .... . . . . ...... . . . .. . ... . .. . ....... . .. .. . ...... . . .. ... . . .. . .... . ......... . . ... . . .. . . . .. . . . ... . ... .. ... ... . . . . . .. . . .. ... . .. . .. .... . .. . . . . . . .. . . .. .. .. . . ... . . .
lowQualScore : 4 7 3 99 7 7 7 4 7 0 2 4444 0 99 0 0000000 55555555 0 111 0 5 99 99 888 888 0 0 1 4 888 4 4 3 222 7 4 4 11111 4444 999999 4 9999 1 0 999999999 9 4 7777 4 4 2 4 4 00 4 4 7 4 4 333 4 9 4 11 4 6 66666666 9 888 1 777 4 4 4 8 0 44 8 00 0 7 0 7 4 4 5 99 33 4 4 77 11 888 11 888 22 99 0 0 99 7 88888888 222222 7 8888888888888888 3333333333333333 1 1111111111111111111111111111111111111111111111111 0 7 1111 0 5 00 6666666 6 88 8 7 7 0 7 0 5 00000000000000000 0 7 0 7 33333 4444444 7 99 4 4 88 4 4 11 00 4 11 4 222 4 4 6666666 4 4 44 88888 0000 9 7 4 4 888888 6 6 6 66 6 111 6 00 3 4444444 4 00 22 0 777777 0 0 00 444 6 6 00 3 4444 0 000000000 6 6 444 6 6 00 0 0 3 00 6 5 6 333 1 444 99 888 888 7 3 3 7 3 66 3 6 66 444 6 55 4 99 4444 4 11 0 0 0 0 6 6 55 0 0 00 66 66 0 6 444 6 0 0
consensus : TGCTCTCCACACTA-TGCCGAATATCCTTGCGA--TTGACATA-A-GA-ATGT-CATTCGC-CGCTCATTTC-G--CA-ATGAT-C----GT------A-TAGNTAT--CGCT-AGAC--A--T---TCGTAC---TC-A-CTCTCAA-G---TAA-TC-GT-G-C-CGTTCG-T-GA-----GTT----TTAA---C-GAA-TATTAG----AAACATGCT-CC---T-A--TA-TT-CG--C-AA-GGA-ATTT-G-AAATTTCTCAA-TCCAATCGTA-A-ATAAT-T-CA-T-A-TGCA--T-TNTT-AA-G-C-AAT-CGTAC-GGATGGCAAGC-CA-TTTGCATTGA-TCG-TAATACA-TTCC-TTTTATAACTCGTCAC-AACTCGCAAACGCTCGTAAG--GATT-CGT-G-AAAGGTTTGGGCAAAT--T---TTGAC--GTC--GA-TTTTTTTTCA--CGA-TT-GTC--C-ACGG-----AT-TTCA------AT-CAC--------C-------GGAAT--------TT-----TATTATTTC--------------CGCTT------------------T----------TGGNTTTTATTGCT-TTTCTGT----TCATNTTTTTTTTTTCAT--TTGGTCATC-TTTG-TAGGACTACATGTAATT-CTG-TCCGATTTCCCTCTG-CCTCGACCCCTTC-----CAAGCT------TTNTTCCCA-CCTCTCGGCATGANTTGTCAGTT------CAAAAACT--AAAT-T-AAAA-ACGAA-G-GT--ATT--CGA-A--AAGAAT-T-G-TT-A-AAAA-A-----T-CG-CAACGCA-TGCGCT-T--TTTAT-T--CGTTTT-ATTCTAACTG-AT-A---C--TCGCA-AGAA-TTCG-TTAGACTCGCAAC-GAT-TA-T-CGCAAGC-ATTCG--T-AA--G---GTCGTA--AAGGC-ATTTGTAATC--AT-TC-AGAAAT--TAA---TTGT-AAGA-AA--TTCTT-TATA--T-T-ATC--------GC-A-AA---AAAATCAT-AAG-GTTC--GTAT-GGAA-TTCAT-TAAAGTC-GC-AAA-CAC--TCGT-AAAG---ATT--CGTA---AGAC-CAG-TTG-T-AA-ACGA-TC--TTAAG-CCTTGAT-GGA---T-TTTCAATA--TTTTA-AAA-CCCC----AATC-TTGTT--ATT-TCT-G-ACG-AA-TTTTCT-GCGAA--C-GCC-AAAA--TTT--TCAT--TCGCA-AG-G---ATATTCGGC-ATAGT-GT-GAGAGCA
Reference ( family-2029 ) : TGCTCTCCACACTA-TGCCGAATATCCTTGCGA--TTGACATA-A-GA-ATGT-CATTCGC-CGCTCATTTC-G--CA-ATGAT-C----GT------A-TAGNTAT--CGCT-AGAC--A--T---TCGTAC---TC-A-CTCTCAA-G---TAA-TC-GT-G-C-CGTTCG-T-GA-----GTT----TTAA---C-GAA-TATTAG----AAACATGCT-CC---T-A--TA-TT-CG--C-AA-GGA-ATTT-G-AAATTTCTCAA-TCCAATCGTA-A-ATAAT-T-CA-T-A-TGCA--T-TNTT-AA-G-C-AAT-CGTAC-GGATGGCAAGC-CA-TTTGCATTGA-TCG-TAATACA-TTCC-TTTTATAACTCGTCAC-AACTCGCAAACGCTCGTAAG--GATT-CGT-G-AAAGGTTTGGGCAAAT--T---TTGAC--GTC--GA-TTTTTTTTCA--CGA-TT-GTC--C-ACGG-----AT-TTCA------AT-CAC--------C-------GGAAT--------TT-----TATTATTTC--------------CGCTT------------------T----------TGGNTTTTATTGCT-TTTCTGT----TCATNTTTTTTTTTTCAT--TTGGT-A-C-TTTG-TAGGACTACATGTAATT-CTG-TCCGATTTCCCTCTG-CCTCGACCCCTTC-----CAAGCT------TTNTTCCCA-CCTCTCGGCATGACTTGTCAGTT------NAAAAACT--AAAT-T-AAAA-ACGAA-G-GT--ATT--CGA-A--AAGAAT-T-G-TT-A-AAAA-A-----T-CG-CAACGCA-TGCGCT-T--TTTAT-T--CGTTTT-ATTCTAACTG-AT-A---C--TCGCA-AGAA-TTCG-TTAGACTTGCAAC-GAT-TA-T-CGCAAGC-ATTCG--T-AA--G---GTCGTA--AAGGC-ATTTGTAATC--AT-TC-AGAAAT--TAA---TTGT-AAGA-AA--TTCTT-TATA--T-T-ATC--------GC-A-AA---AAAATCAT-AAG-GTTC--GTAT-GGAA-TTCAT-TAAAGTC-GC-AAA-CAC--TCGT-AAAG---ATT--CGTA---AGAC-CAG-TTG-T-AA-ACGA-TC--TTAAG-CCTTGAT-GGA---T-TTTCAATA--TTTTA-AAA-CCCC----AATC-TTGTT--ATT-TCT-G-ACG-AA-TTTTCT-GCGAA--C-GCC-AAAA--TTT--TCAT--TCGCA-AG-G---ATATTCGGC-ATAGT-GT-GAGAGCA
gi|1 : CTCTACACACTA-GGCCGCATAC---TGCGAATTTGAGA-A-A-GATCTGT-CATTCGC-GG----TTTCTG--CT-ATGAT-CTCAAAT------ACTGGATGT--TAGT-AGGT--GGCT---TCGTACCTCTC-A-CTAGTAA-G---TAA-TCCGT-G-G-CGTT-G-T-GGTTATTATT----ATAA---C-GAAATATTAG----AAACATGCT-CC---T-A--CA-TTGCG--CTAA-GGA-AATT-GCAAAATGCTCAAATCCAATCGTATATATAAT-TTCA-TTA-TGCAATT-TTTT-AA-G-CCAATGCGTAT-TGATGGCAAGAGCA-TTTGCATTGGGTCGGTAATA-A-TTA--TTATATAGTTCGTCACGAACTCGCAA-CATTCGTAAG--GATTGCGT-G-AAAGGTT--GGCAAAT--TGTTTTGAT--GTC--AA-ATTTTT------CG--TC-GTC--CGACGG-----GC-TTTA------AT-CAC--------CAGAATCCGGAAT--------TT-----TATTATTTCGCTTCGGGCTTTATTGCTT------------------TGACTGTTTCATGGTTTTTATTATT-CTTCTTTATCTTTATTTTTTTTTTTTTTT--TT--T-A-CATTTG---GGTCAAT-TGTAGAT-GAGCTCCGATTTCTC------CTC-ACCC----------AAGTT------TTTCGCTCA-CGTC--AGCATAAGT-GTT-GTT------CAA----------T-T-AACA--TGAA-G-TT--GT---CGA-A--A-GAAT-T---TT-A-AAAATG-----T-CG---ACGCT-AGCCTC-C--TTTATATGGCGTTTT---TCTAATTG-ATCA---C--TCG-A-AGAA-TTCG-TTAGACT-GCAAC-AAT-C--T-CGCA-GC-ATTCG--TGAA--G---GTCGTG--AAG-C-ATGTGTA--T--AT-TC-ACAAAT--TAA---TTGT-AAGTTAA--TCTTT-TATA--T-TTATC--------GC-A-AA---AAA-TCAT-AAG-GTTC--GTGA-GGAA-TTC-T-TAAAGTC-GCAAAA-CAC--TCGT-AAAG---ATT--CGTA---AGA--CAGCTTG-T--A-ACGA-TCGATTA----CTTGAT-GAT---C-TTTCAATA--TTTTA-AAA--CTC----AATT-CTATT--ATT---T-GCACG-AA-TTTCGT-GCGAA--A-GCC-AAAAGGTTT--TTATCATAG-A-AG-GAAAATATTCGACTATAGT-GT-GA
gi|10 : TGCTCTC-ACACTA-TGCCGAATATCCTTGCGA--TTGACATA-A-GA-ATGT-CATTCGC-CGCTCA-TTC-G--CA-ATGAT-C----GT------A-TAGCTAT--CGCT-AGAC--A--T---TCGTAC---TC-A-CTCTCAA-G---TAA-TC-GTCG-C-CGTTCG-T-GT-----GTT----TTAA---C-GAA-TATTAG----AAACATGCT-CC---TAA--TA-TT-CG--C-AA-GGA-A-TT-G-AAA-TTCTCAA-TCCAATCGTA-A-ATAAT-T-CA-T-A-TGCA--T-TCTT-AA-GCC-AAT-CGTAT-TGATGGCAAGC-CA-TTTGCATTGA-TCG-TAATACA-TTCT-TTTTAT-ACTCGTCAC-AACTCGCAAACACTCGTAAG--GATT-CAC-G--AAGGTTTGGACAAAT--T---TTGAC--GTC--AA-TTTTa
gi|11 : tacTACTGTCCACACTA-TGCCGAATATCCTTCCGA---TGACATAGA-AG-ATGT-CATTCGA-CGCTCA-TTC-G--CA-ATGA--C----GT------A-TAAATAT--CGCT-A-AC--A--T---TCGTAC---TC-A-CTCTCAA-G---TAGTTC-GT-T-G-CGTTCGTT-GA-----TCT----TTAA---C--AC-TGATAGT---AAATAT-CT-CCA--C-G--TA-TT-CG-----A-GGA-A-TT-G-GAATTGCTCAA-T--AATCGTA-A-ATAAT-T-CA-T-A-TGCA--T-TATT---------AT-CGTAC-AGATGGC--GC-CA-TTTGCAC--A-TCG-TAATA-A-TTCC-TTTTATAACTCGTCAC-AACTCGC-AACGCTC-TAGG--AATT--GT-GAAAAGGTTTGGGCAAAT--T---TTGAC--GTC--GA--ATTATTTCA--CGATTT-GTC--C-
gi|12 : aTACTGTCCACACTA-TGCCGAATATCCTTCCGA--T-GACATA-AAGA-ATATTCATTCGC-CGCTCATT-C-G--CACATGA--C----GT------A-TAAATAT---GCT-AGAC--A--T---TCGTAC---TC-A-CTCTCAATG---TA--TC-GT-G-C--GTTCG-T-GA-----TCT----TTAA---C---A-TAT-AG----AATTAT-CT-CCACGT-A---A-TT-CG----AA-GGA-ATTG-G-AAATT-CTCAA-TC-AAT-GTA-A-ATAAT-T-CA-T-A-TGCA--T-TATT-A--------T-CGTACAGGATGGCAG---CA-TT-GCACTGA-TCG-TAATACAATTCCATTTTATA-CTCG-CAC-A-CTCGCAAACGCTC-TA-G--GATT-CGT-G-AAAAGGTTGGGCAAAT--T---TTGAC--GTC--GA-TATTATTTCA--ACA-TT-GTC--C-
gi|13 : aT-----TAGTATTTC--------------C---T------------------T----------TGAGTTTTATTGCT-TTTCTGG----TCATTTTTTTTTCTCCAT--TTG-------TTGG-TAGGACTACATGTAATT-CTG-TTCGATTTCCCTCTG-CCTCAAACCCTTC-----CAA-CT------TTGTTTCCA-CCTCTCGACAT-ACATGTCAGTC------AAAAAACT--AAAT-T-AAAA-ATGAA-T-GT--ATT--CGA-G--AAGAATGT-G-TT-A-AAAA-T-----T-CA-CAACGCA-TGCGC--T--TTTAT-T--CATTTT-ATTCTAAATG-AC-A---C--TCGCA-AGAATTTCGTTTAGACTCGCATC-GAT-TA-T-CGCAAGC-A-TCG--T-AAGCG---GTGGTA--AA-GC-AGTTGTA
gi|14 : AAT--TAA---TTGT-AAGA-AA--TTCTT-TATA--T-T-ATCTGATTATTGC---AA---AAAATCAC-AAG-GTTC--GTAT-GGAATTTCATATAAAGTC-GC-AAA-CAC--ACGTGAAAGATAATT--GGTAAAGAAACACAG-TTGAT-AATACGA-TC--TTAAGCCCTTGAT-TGA---T-TTTCAATG--TTTAATAAA-CCCT----AATCATTGTTACATTGTCTGG-ACGAAA-TTTTCT-GCGAACCC-GCCAAAAA--TTT--TCATG-TCGCA-AG-G---ATATTCGGC-ATAGTAGT-GAGAt
gi|15 : --AAAT-T-AAAA--CGAA-G-GT--ATTT-CAG-A--AAGAAT-T-G-TT-A-AAAA-A-----T-CG-CAACGCA---CGTT-T--TATCT-T--CGTTTT-AT-CTA-CTGGAT-A---TCGTCACG-ATAA-TTC--TTA-ACTTGCAAC-AATATA---AGCAAACCATCAT--T-AG--G---GTC-TA--AAGGCCATTTGTA-TC--ATATC-AGAAAT--TAA---TTGT-AAGA-AA--TCTTT-GATA--T-T-ATT--------GC-A-AA---AAAATCAC-AAG-GTTC--GTAT-GGAA-TTTAT-CAAAGTC-GCAAAA-CAC--TCGT-AAAG---AT
gi|16 : aATC--AT-TC-GCAAGT--TAA---TTGT-AAGA-AA--TTCTTGTATA--T-T-ATT--------GC-A-AA---AAAATCAT-AAG-GTTC--GTAT-GGAA-TTCAT-TAAACTC-GC-AAACCAC--TCGT-AAAG---ATT--CGTA---AGA--CAA-TCG-T-AA-ACGA-TC--TTAAG-CCTTGGT--GA---T-TTTTGATA--TTTTA-AAC-ACCC----AATC-TTATT--ATT-TCT-G-ACA-AA-TTTTCT-GCGAA--C-GCT-AACAT-TTT--TCAT--TCGCA-AG-G---ATATTCGGC-ACAGT-GT-GAGAGC
gi|17 : CA-AGAA-TTCG-TTAGACTTGAAAC-AAT-TA-C-CGCAATC-ATTCG--T-AAG-G---GTCGTA--AAGGC-ATTTGT-ATC--AG-TC-AGAAAT--TAA---TTGT-AAGA-CA--TT-TT-TATA--TCT-ATT--------GCAA-AA---AAAATCAT-AAG-GTTC--GTAT-GGAA-TTCAT-TAAAGTC-GCAAAA-CAC--TCGT-AAAG---ATT--CGTA---AGA--CAA-TTG-T-AA-ACGA-TC--ATAAG-C----AA-GGA---T-ATTC
gi|17 : --TCAT--AAGCA-AG-G---ATATTCGGC-ATAGT-GT-GAAAGCAggcatagtgtgaaagca
gi|18 : caagaattcgttagacttgaaacaattaccgcaatcattcgtaagggtcgtaaaggcatttgtatcagtcagaaattaattgtaagacatttttatatctattgcaaaaaaaatcataaggttcgtatggaattcattaaagtcgcaaaacactcgtaaagattcgtaagacaattgtaaacga-A-AA---AAAATCAT-AAG--TTC--GTAT-GAA---TCGT-TAAC-TC-G--AAA-CAC---CG---AAA---ATT--CATA---AGAC--AG-TTG-T-AA-ACTA-TC--TTAAG-CCTTGGT---A---T-TTTT-ATA--TTTTA-AAA--CCC----AATC-TTA-T--ATT-TCTGG-ACA-AA-TTTTCT-GCGAC--CAGCT-AACA--TTT--TCAT--
gi|19 : aTGCTCTC-ACACTA-TGCCTAATATCCTTGTGA--TTGACATA-A-GA-ATGT-CATTTCC-CGTTCAGT-C-G--CA-ATGAT-C----TT------A-TAGGTAT--TGCT-AGTT--A--T---TCGTAC---TC-A-ATCTTAA-G---TAA-TC-GT-G-CTCGTTTG-T-GA-----GTT----TTAA---C-GAA-TACTAG----AAACATGCcaca
gi|2 : tacTGCTCTCCACACTAGTGCTGAATATCCTT-CGA--TTGACATA-A-GA-ATGC-CATTCGC-CGCTCATTTC-G--CA-ACGATTC----GT--------TAGCTAT--CGCT-A-AC--A--T---TCGTAC---TC-A-CTC-CAA-G---CAA-TC-GTCG-C-CGTTCA-T-GA-----GTT----TTAA-----GAA-TATTA-----AAACATGCTGCC---T-A--TA-TT-CG--C-AAAGGA-ATTTTG-AAATTTCTCAA-TC-AATCGTA-A-ATAAT---CA-TTA-TGCA--T-TCTTTAA-G-CCAAT-CGTAT-G-ATGGCAAGC-CA-TTTGCATTGA-TCG-TAATACA-TTCC-TTTTATTACTCGTCAC-A-CT-GCAAACACTCGTAAG--GATT-CGTTG-AAAGGTTTGGGCAAAT--T---TTGAC--GTC--AA-TTTTTTTCCA--CGA-TT-GTC--C-ACGG-----AT-TTCA------AT-CAT--------C-------GGAAT--------TT------ATTATTTC--------------CGCTTGGGTTTTTTGCTTTTCTGT----------TGGTTTTTGTTGTTGTTTTTGT----TGTTGTTTTTTTTTTCAT--TTGGTCATC-TTTG-TAGGAATAAA-GTAATT-CTG-T-CGATTT-CCTCTG-CCTTGACCCCTTCGGCTTCAAGCT------TTTTTCCCA-CCTCTC--CA-G------CAG-T------GAAAAACT--AAAT-T-AAAA-ACGAA-T-GT--ATT--CG--A--TAGATT-T-GTTT-A-AAAA-A-----TACG-CAACG-A-TTTGCTGT--TTTAT-T--CGTTTTAATTCTAACTG-AT-AGTCC--TCGCA-AGAA-TTCG-TTAAACTTGCGACTGAT-TA-T-CACAAGC-ATTCA--T-AA--G---GTCGTA--AAGGT-ATTTGTAATC--AT-TC-AGAAAT--TAA---TTGT-AAGA-AAGTTTCTT-TATAGTT-T-ATT--------GC-ATAA---AAAA-----AA---------------AA-TCC-----AAGTC-GC-AAA-CAC--TCGT-AAAG---ATT--GGTA---AGAC-CAG-TTG-T-AA-ACGAGTCT-TTATG-CCTTGATGGGA---T-TTTCAATA--TTTAG-AAACCCCC----AATC-TTGTT--ATT-TCT-G-ACG-AA-TTTTCT-GTGAA--C-GGC-CAAA--TTT--TCAT--TCGCA-AG-G---ATATTCGGC-ATAGT-GT-GAGAGCA
gi|20 : GT-AAAG---ATT--CGTA---AGAC--AG-TTG-T-AA-ACGA-TC--TTAAG-CCTTGAT-G-A---T-TATCAATA--TTTTA-AAA-CCAC----AATC-TTATT--ATT-TCT-G-ACG-AA-TTTTCT-GCGAA--C-GCC-AAAAT-TTT--TCAT--TCGCA-AG-G---ATATTCGGC-ATAGT-GT-GAGAG
gi|21 : TCAT--AAAGTC-GC-AAA-CAC--TCGT-AAAG---GATAATGTA---AGAC-AAG-TTG-T-AA-ACGA-TC--TTAAG-CCTTGAT-GAAAGCT-TTTCAATACTCTTTA-AAA-CCCCAATAAATC-TTGTT--ATT-TCT-G-ACG-AA-TTTTCT-g
gi|23 : a-AAAG---ATT--CGTA---AGAC--AG-TTG-T-AA-ACGA-TC--GTAAG-CATGGCT--GA---T-TTTCAATA--TTTTaat
gi|23 : A-TTTTCT-GCGAA--C-GTC-AAAAC-TTT--TCAT--TCGCA-AG-G---ATATTCGGC-ATAGT-GT-GAGAGCActgcgaacgtcaaaacttttcattcgcaaggatattcggcatagtgtgagagcagc
gi|24 : aaagattcgtaagacagttgtaaacgatcgtaagcatggctgattttcaatT-TCT-G-ACA-AAATTTTCT-ACGAA--A-GCC-AAAAT-TTT--TCAT--TCGCAGAG-G---ATATTC-GC-ATAGT-GTGGAGAGgc
gi|26 : T-CGT-G-AAAGGTTTGGGCAAAT--T---TTGAC--GTC--GA-TTTATTTTCA--CGA-TT-GTC--
gi|28 : -G---ATATTCGGC-ATAGT-GT-GAGAGCA
gi|3 : A-G---TAA-TC-GT-GGT-CGTTGG-T-GA-----GTT----TTAA---C-GAA-TATTAA----AAATATGCT-CA---T-A--AAATT-CG--C-GA-GAA-ATT--G-AAATGT-TCAA-TCCAATTGTA-A-ATAAT-T-CA-T-A-T-------------------------T----GATGGCAAGC-CA-TTTGCATTGA-TTT-CAATACA-TTCC-TTATATA-CTCG-----AAC------ACACTCGTAAGAAGA----GT-G-AAAG-TTGGGGCAAATGTT---TTGACATGTC--AAATTTTTTTTCA--CGA-TT-GTC--C-ACGG-----AT-TTCA------AT-CAC--------C-------GGAATCATCGGAATT-----TATTATTTC--------------TGCTT------------------T-----------GGATTTTATTGCT-TTTCTGT----TCATATTTT------CAT--TTGGTCATC-TTTGGTAGGACTACATGTAATT-CTG-TCCGATCTCCCTCTG-TCCGGACCCCTTC-----CA-GCG------TTGTTCCCA-CCTCACGGTATGAGTTGTCAGTT------CAAAAACT--AAAT-T-CAAA-ATGAA-G-GT--ATT--CGA-A--AATAAT-T-G-TTTA-AAAA-A-----T-CC-CAACGCA-TGCGCT-T--TT-AT-T--TGTTTT-ATTCTAACTG-AC-A---C--TCGTA-AGGA-TTCG-TTAGATTCGCAAC-GAT-TA-T-CGCAAGC-ATTCG--T-A-----------TA----------TTATTGCC--CC-CCAAAAAATCATAAGGTTCGT-ATGG-AA--TTCGT-TAAA--C----TC--------GC-A-AA---TAACTCGTAAAG-ATTC--ATAgcatagg
gi|3 : --TCGTATGGAA-TTCG-TTAAACTCGCAA---AT-AACT-CGTAAAG-ATTCA--T-AA--GACAGTTGTA--AAagacagttgtaaa
gi|4 : agtaatcgtggtcgttggtgagttttaacgaatattaaaaatatgctcataaaattcgcgagaaattgaaatgttcaatccaattgtaaataattcatattgatggcaagccatttgcattgatttcaatacattccttatatactcgaacacactcgtaagaagagtgaaagttggggcaaatgttttgacatgtcaaattttttttcacgattgtccacggatttcaatcaccggaatcatcggaatttattatttctgctttggattttattgcttttctgttcatattttcatttggtcatctttggtaggactacatgtaattctgtccgatctccctctgtccggaccccttccagcgttgttcccacctcacggtatgagttgtcagttcaaaaactaaattcaaaatgaaggtattcgaaaataattgtttaaaaaatcccaacgcatgcgcttttatttgttttattctaactgacactcgtaaggattcgttagattcgcaacgattatcgcaagcattcgtatattattgccccccaaaaaatcataaggt-TT-CG--C-AA-AGA-ATTT-A-AA--TTCTCAA-CCCAATCCTA-A-ATGAT-T-CA-T-A-TGCA--T-TGTT-AAGG-C-AAT-TGTAT-GGATGATAAAC-CA-TGTGCATTGA-TGG-TAAT
gi|4 : aaacA------AC-CAT--------C-------GAAAG--------T-------ATTATT-C--------------CGCTT------------------------------GGGTTTTATTGAT-ATTATGT----TCATTTTATTTTGGTCATCTTTGGT-A-C-AT-G-CAGGGCTACATGTAATT-CTG-TCCGGTTTCCCTCTG-CCTCGAACTATTC-----CA-GAT------TTGTTTCCT-CCCTTCGGTATGATCTTTTAGTT------CAAAAACT--AAAT-T-CAAA-ATGAA-G-GT--ATT--CGA-G--AAGAAT-T-C-TT-A-AGAC-A-----T-TG-CAATGCA-TATGC--T--TTTAT-T--CGTTTT-ATTCTGA-----------------CA-AAAA-TTCG-TTAGACTTGCAAC-GAT-TA-T-CGCAAGC-ATTCT--TAAA--G---ATCGTA--AAAGC-ACTTGT-------T-T------------A---TTGT-AAGA-AA--TTCTTGTATA--gataattcgcaaggttgttttatggtgatgttttttggtgttgatggagagtgtggcggtatagcaattggtgtgatataattgttagatatattattggaaccatcgaaagtattattccgcttgggttttattgatattatgttcattttattttggtcatctttggtacatgcagggctacatgtaattctgtccggtttccctctgcctcgaactattccagatttgtttcctcccttcggtatgatcttttagttcaaaaactaaattcaaaatgaaggtattcgagaagaattcttaagacattgcaatgcatatgcttttattcgttttattctgacaaaaattcgttagacttgcaacgattatcgcaagcattcttaaagatcgtaaaagcacttgtttattgtaagaaattcttgtata
gi|5 : aaacttcgcaaagaatttaaattctcaacccaatcctaaatgattcatatgcattgttaaggcaattgtatggatgataaaccatgtgcattgatggtaatgataattcgcaaggttgttttatggtgatgttttttggtgttgatggagagtgtggcggtatagcaattggtgtgatataattgttagatatattattggTGCTCTC-ACACTA-TGCCCAATATCCT-GCGA--TTGACGAA-A-GATCTGT-CATTCCG-CGTTT-CCTC-GACTA-ATGAT-C----GT------A-AATATA---CGCTTAGAT--A--TGGCTTGTAC---TCTA-CTATGAA-G---TAA-TC-GT-G-C-CGTT-G-T-GA-----GTTATTATTAA---C-GAA-TATTAG----AAACATGCT-CC---T-A--AAATT-CG--C-AA-GGA-A-TT-G-AAA-TGCTCAA-TCCAATCGTA-A-ATAAT-T-CATT-A-TGCA--T-TTTT-AA-GCC-AATCCGTAT-TGAT-GCAAG--CA-TTTGCATTGG-TCG-TAATA-A-TTCA--TATATAGTTCGTCAC-AATTCGCAAACATTCGTAAG--GATT-CGT---AAAGGTT--GGCAATT--T---TTGAT--GTC--AA--ATTTTTTCAGTCGG--T-GTC--C-ACGG-----CT-TTCA------AT-CACCAGAATCAC-------GGAAT--------TT-----TATTATTCT--------------CGC--------------------T----------TGGCTTTTATTGCT-TTACTGT----TCATGTTTTTTTTTTC
gi|6 : atacTCCGCACGCTCACT-C-G--CAGATGAT-G----GTTATGGCA-TAGCTATACCGCTTAGACTCA--T---TCGTAC---TC-ATCTCTCAA-GTATTAG-TC-GTGG-C-CGTTCG-TCGA-----GTT----TAAAGGGCGGAA-TATTAGATCTAGACATGCG-CC---T-AATTA-TT-TAGCC-AA-GGACATTT-G-CA--TTCTCAT-TCAAATCTCG-A-ATAATAT-CA-T-ATTGCA--TGTCCT------CTAAT-T---C-AGAT------C-CATTTTGCTTTGA-TCG----TATG-TTTC-TTTttctt
gi|6 : TCGTAAT--GATT--GT-G-AA----TT-------T--T---TT-AC--GTTCAAA-TTTTTTTTCA--CGA-TTTGTCGCT-ACGATTTTTATATTCACTGGATATGCAT--------C-------GGAAT--------TGGGGGGTATCATTTC--------------CGTCT------------------T----------GGGTTTTTA-TGCT-TTTCTGT----Tatctacccaatatgataagataactttgtatttatatgtggctgacgatctttttcgtaatgattgtgaattttttacgttcaaattttttttcacgatttgtcgctacgatttttatattcactggatatgcatcggaattggggggtatcatttccgtcttgggtttttatgcttttctgttgccc
gi|7 : tccgcacgctcactcgcagatgatggttatggcatagctataccgcttagactcattcgtactcatctctcaagtattagtcgtggccgttcgtcgagtttaaagggcggaatattagatctagacatgcgcctaattatttagccaaggacatttgcattctcattcaaatctcgaataatatcatattgcatgtcctctaattcagatccattttgctttgatcgtatgtttctttatctacccaatatgataagataactttgtatttatatgtggctgacgatcttttTGTAATTTCTA-TCCGATTTCTCTCTGCCCTCGACCCCTTC-----CAGGCTCCTCCCCCCCCCCCACCCTCCCAGCATGACTTGTTAATTTAGTTCCAAAAACTTCAAATCC-AAAACACGAC-GCGT--AATGGCGA-AACAAGCAT-T-G-TT-ACAAAC-ACACCTC-CG-CAACGCATTGC-CT-TCCTTTAT-T--CATTTT-ATTCTAATTG-AT-A---C--TCACA-AGAA-TTCG-TTAGACTTGCAAC-AAT-TA-T-CGCAAGC-ATCCG--T-AA--A---GTCGTGTCAAAGC-ATTTGT-ATC--AT-TC-AGAAAT--AAA---TCGTAAAGA-AA--TTATT-TATA----T-ATG--------GC-A-AAAACAAAATCAT-AAGCGTTCGTGTGT-GGAA-TTCAT-TAAAGTC-GC-AAA--GC-----T-AAAG---AGT--CGTA---AGA--CAG-TTG-T-AACACGA-Tgccc
gi|8 : T------GAAAAA-T--AAAT-T-AAAA--CGAA-G-GT--ATTT-CGA-A--AAGAAT-TTG-TT-A-AAAA-A-----T--G-CAACGCA-CGTG------TTTAT-T--CGTTTT-ATTCTAACTG-AT-A---C--ACGCC-AAGA-TTCG-TTAGACTTGCAAC-AAG-TA-TAAGCAACC-A-TCAATT-AG--G---GTC-T---AAGGC-ATTTGT-ATCATAT-TC-AG-AAT--TAA---TTGC-TAAA-AA--TTCTT-TATA--T-T-ATT--------GC-A-AA---AAAATCAC-AAG-GT----GTATAGGAA-TTTAT-CAAAGTCTGC-AAA--ACCATCGT--AAG---ATTG-CGAA---A----CAG-TTG-TAAA-ACGA-TC--TTAAG-CCTTGAT--GA---TGTTTCAATA--TTTTA-AAA-CACC-----ATC-TTGTT--ATA-TCT-G-ACG-AA-TTTTCT-GCGAA--C-GCC---AA--TTTA-TCAT--TCGAA-CGAG---ATATTC-GC-ATAGtct
gi|9 : AAT-TCAAAA-ACGAAAG-GTTGATT--CGACA--AAGAAT-T-G-TT-A-AAAA-------T-CGTCGACGC--TATGCT-C--TTTAG----CGTTTTTATTCTAATTG-AT-A---C--TCGCA-AGA--TTCG-TTAGATCTGCAAC-AAT-CA-T-CGCAAGC-ATTCG--T-G---G---GTCGTG--AAG-C-ATGTGTA--T--AT-TC-AGAAAT--TAA---TT-T-AAGA-AA--TTCTT-TATA--T-T-ATC--------GC-A-AA---AAAATCAT-AA--GTTC--GTAT-GGAA-TTCAT-TAAAGTC-GCAAAA-CAC--TCGT-AAAG---ATT--CGTA---AGA--CAGCTTG-T-AA-ACGA-TC--TTA---CCTTGAT--GA---T-TTTCAATA--TTTTA-AAA---CC----AAT--TTATT--A-T-TCT-G-CCG-AA-TTTTCTGGCGAA--C-GCC-AAAAGGTTTTATCAT--TCGCA-AG-G---ATATTCGAC-ATAGT-GT-GAG
3 sequences could not be aligned to this reference sequence:
Unaligned ( gi|22 ): AGTTATAATCTTAAATTGTTATTGGACACGAGATAGCAAATAGCATGCTTTATTTTAAAAAGACGTCATTAAATGCAGGTTGAACTATAATAGCGAAAATACCAACTGTATGTACATATTAA
Unaligned ( gi|25 ): TTANNNNNNNNNNNNNNNNNNNNNNNNNAGAAAAGAGTATATATCTTGGTGTCATTA
Unaligned ( gi|27 ): GCNATGACATGCAGTTCTTGGATAATTTCTGT