lowQualScore : 11111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 1 11 111 4444444444444444444444 77777777777777777777777777777777777 111111111111111 1 22222 33 11 3333333 11 11 11 22222222222222222222222222222222222222222222222222222222222222222222222 111 33333 111 33333333 11 555555555555555555 111 11 333333 3 3333333 111 5555555555555555 1111 2222 1 11 33333 222 1 555555 222 111111 2 111 1 33333 222222222 3 1 111 111 22 111 444444444444444444444 11 1 44 33333333333
lowQualScore : 3 88 999 9999999999999999999999 77777777777777777777777777777777777 88 999999999999999 1 0 8 0 8 6 99999 0 8 999 55 11 0 6666666 8 11 11 3 0 11 88888888888888888888888888888888888888888888888888888888888888888888888 8 444 8 8 55555 111 6 99 00000000 11 8 999999999999999999 5 8 6 555 4 00 777777 4 99 2222222 000 88 0 1 2222222222222222 7777 7777 8 6 11 44444 2 555 0 000000 7 555 666666 8 4 111 0 88888 8 555555555 3 2 3 8 6 1 5 5 444 5 5 000 66 77 1 5 4 666 3 555 222222222222222222222 44 77 3 3 44 3 3 3 3 2 44 6 11 3 3 3 3 5 8 11 7 77 55 666 44444444444 8
lowQualScore : . .. ... ...................... ................................... .. ............... . . . . . . ..... . . ... .. .. . ....... . .. .. . . .. ....................................................................... . ... . . ..... ... . .. ........ .. . .................. . . . ... . .. ...... . .. ....... ... .. . . ................ .... .... . . .. ..... . ... . ...... . ... ...... . . ... . ..... . ......... . . . . . . . . ... . . ... .. .. . . . ... . ... ..................... .. .. . . .. . . . . . .. . .. . . . . . . .. . .. .. ... ........... .
lowQualScore : 3 33 000 8888888888888888888888 88888888888888888888888888888888888 88 222222222222222 4 0 0 8 0 0 66666 6 0 000 88 00 8 0000000 0 00 88 8 8 00 00000000000000000000000000000000000000000000000000000000000000000000000 0 000 0 0 00000 777 7 22 00000000 00 0 222222222222222222 6 0 7 333 2 33 555555 3 22 0000000 333 88 8 0 0000000000000000 8888 4444 0 0 00 00000 5 555 0 666666 3 000 000000 0 0 888 0 00000 0 000000000 2 0 2 0 7 4 7 7 444 7 7 999 44 99 7 0 0 666 6 555 444444444444444444444 77 99 3 3 66 3 3 3 3 5 66 7 22 6 6 6 6 4 5 55 3 44 00 444 44444444444 0
consensus : GTGTTGAT-TA--TAGTTTG-TAATAGAAT-AG--TTTAT-TCT--GTC--GCATAAAA-------AC-GAGTGT-----TTCAAAATTTTA-AGTTCT-AAA---AC--TGCTTT-GCGAAATCGTCC-AATGAAA-ATGA-GT--TTAT-ACTGAAAAGAAG-AATCC--TTGCTAAATA-AT----CAG-T--CATTT-ATTCGTTCAATGG--CC--AT-TTGAC---------G-----TA----TTTTC-G-GC-A---G----G--T---TTTTTTTC-----A-TCCA---AAAC-T-TCT--NTTCTC---ATG-C--ACAACCG---G-TC-TT--CTCA-TGC-CACA-CAT-A--TGATCTCATG-CACAACATTTTCT-TT-C-GGAT-CAT----GGTAAA-ATTATAT--TTAT--TC-ACAT-TCGGAAAG-AAAATC-TTTTGTTA--GANA-TGA---AGGAGG--GTTTTAAAA-AGAATATTTA-CAGATTGATCGT--GGTNC-NAATAATGGTAACAAGGTTT-AGGAA--T-ACTAAT--CAAAAATGCACACA--T---TTCCCTAGGTTG-AACCCGGGGCAAAA--CTTCTGC--AAGG-AAAAT--A------TAAGCAGTCCTGTATGAA-ATAA-ATCATTTGG-TACG-GA-AGACAAATC--CCTTGGCC-A-CTG-C-ATCACATCG-TCCG--ATTGACGAAATACC-T-AATATA-AAGCTCAA-ATTTT--CTT--A-------TCA--------T-AGC--AACGT-GG-TTGTTG--TTTTC-ACTC-G-A-TCTCA--TGC-A--CA-A-CCGGAAG-TCGTTCTC-ATGATTTTCT--TTG-CAC-AACAT--TTG---GTTGTGCA-AGAGAAACG-ATAAGCGG-CGT
Reference ( gi|2 ) : GTGTTGAT-TA--TAGTTTG-TAATAGAA--AG--TTTAT-TCT--GT---GCATAAAA-------AC-AAGTGT-----TTCAAAATTTTA-AGTTCT-AAA---AC--TGCATT-GCGAAATCGTCC-AATGAAA-ACGA-GT--TTAT-ATTGAAAAGAAGTAATCC--TTGCTAAATA-TT----CAG-T--CATTT-ATTCGTTCAATGG--CC--AT-TTGGC---------G-----TA----TTTTC---GC-A---G----G------TTTTTTGC-----A-TCCA---AAAC-T-TCT--ATTCTC---ATG-C--ACAACCG---G-T--TT--CTCA-TGC-CACA-CAT-A--TGATCTCATG-CACAACATTTTCT-TT-C-GGAT-CAT----G-TAAAGATTATAT--TTGG--TCAACAT-TTGGAAAG-AAAATC-TGTCGTTA--GAT--TGA---AGGAGG--GCTTTAAAA-AGAATATTTA-CAGATTGATCGT--GGCGT-CAATAATGGTAATAAGGTTT-AAGAAAATGACTAAT--CAAAAATGCACACA--T---TTCCCTAGGTTG-A-CCTGGGGCAAAA--CTTGTGC--A--G-AAAAT--A------TAAGCAGTTC-GTATGAA-ATAA-ATCATTTGG-TACG-GA-AGACAAATT--CCTTGGCC-A-CTG-C-ATCACATCGGTCCG--ATTGACGAAATACC-T-AATATA-AAGCTCAA-ATTTC--CTT--A-------TCA--------T-AGC--AACGT-GG-TTGTTG--TTTTC-ACTC-G-A-TCTCA--TGC-A--CA-A-CCGGAAG-TCGTTCTC-ACGAATTTCTTCTTG-CAT-AACAT--TTG---GTTGTGCACAGAGAAACGAATAAGCGG-CGT
gi|3 : GTGTTGAT-TACATAGCTTGGTAATAGAAT-AG--TT-AT-TCTCTGT---GCATAAAA---------------------TTCATAGTT-----GTTC-----------------------AAT--TTA-AATGAAA-ATGA--T--TGGT-ATTGAAAAGGGAGATTCC--TTGCTAAATA-AA----CAG-TTACATTTCATCCGTTCAATGG--CCCCAT-TTGGC---------G-----TA----TTTTTTG-GCCA---G----G------TTTTTTTTTCTTTA-TCCA---AAAT-T-T----ATTCTC---ATG-C--AC-ACCG---T-T--TT--CTCA-TG--CACA-CA--A--TGA-CTCATG-CACAACATTTT-T-TT-C-GGAT-CATG---G-TAAAAA-TATAT--TTGGTATC-ACA--TTGGAAAG--AAATT-TTTTGTTA--GAGA-TGA---AGGAGGGTGTTTTAAAA-AGATTACTTA-CATATTGATTGT--GGTAC-AGATAATGGTA--AAGGTTT-AAG--AAT-ACT-AT--CAAAAATGCACACAATT---TCCCCTAGGTTGAA-CCTGGGGCAAAA--CTTGTGC--AGTG-AAAATTAA------TAA-CAGTTCTGTATAAA-ATAA-ATCATTTGGTTACGTGAGAGACAAATT--CCTTGGCC-A-CTG-CAATCACATCG--TCG--ATTGATGAATTACC-T-AATATA-AGGCTC-A-ATTTT--CTT--AT------TCA--------T-AGC--AGCGT-GG-TTGTTG---TTTC-ACTC-GAA-TCTCA--TGC-ACCCA-ACCCGGAAG--CGTTCTC-AT--ATTTCT--TTGCCATAAACAT--TT----GTT-TGCA-AGA-AGACG-ATAAGCGG-
gi|8 : GTGTTGAT-TA--TGGTT-----GTAGAAT-AG--TTTA--TCT--GTG--GCATAAAA-------AC--AGTGT-----TT--AAATTTTG----TCTAAAA---AC--TGCTTT-ACAAAAT-GTCCGAAT-AAA-ATGA-G---TGAT-A-TAAAAAGAAG--ATCCGGTTGCTAGAGA-AT----CAATT--CATTT-GT--GTTCAATGG--GC--ATCTTGACAGTGCTATAA-----TA----TTTTC---AC-GCCCG----GTGTATTTTTTTTTC-----ATTCCA---AAAC-TAT-----TTCTC---ATGCC--ACAAcgtg
gi|1 : GTTGATGTA--TAGTTTG-TAATAGAATTAGGTTTTATCTCT--GTCCAGCATTAAATTATAATAC-GAATGTAACTGTTCAAAATT--AGAGTTCT-AAATAAACCCTGCTTTTGCAAAATCGTCC-A-TGATATATCATGTAATTATTACTGATAAAAGGAAGACC--CTGC-AAATAATTGTCGTAG-T--CATTC-ATTCCTTCGATGGTCCC--AT-TTTTC---------GGTCTTTGCTCTTTTTCCGAGCTA---GTGTTG------TTTTTT-C-----A-TCCAGTAAAACCT-TCTCCATTCTTCTTATG-CCCACAACCA---G-T--TTTTCTCA-TGC--ACAACAT-GACTGATCTCATGTCACAACATTTTCT-TTTC-GGATTCATCCGGG-TAAA-ATTATATATTTAG--TCA-CAT-GCGAAAAG-AAAATC-TTTT-TTA--GAA--TGATCTAG-AGG--G-TTTAAAA-AGAATATTCATCAGATTGATCGTCTGGTTTACAATAATTGTAAC--GGTTTTAAGAA--TACCTAATTTCATAAATGCACATA--T---TTCCCTAGGTTG-AACCCGTGGCAAAA--TTTCTGC--AAGG-AAAAT--AGTGTGATAAGCAGTTCTGTATGAATATAA-ATCATTTGGGTACG-GA-AGACAAATTTCCCTTGGCC-AACTGTC-ATCACATTCGTCCGCGATTTAC-AAATACC-TTAATATA-A-GCTCAA-ATTTTT-CTT--A-------ACT--------T--GC--AACGT-GG-GTTTTC--TTTTC-AATC-A-T-TCTCA--TGCCA--CA-A-CCGGAAG-TCGTTCTC-ACGATTTTCT--TTG-CAC-AACATGGTTGGAAGTTGTGCA-AGAG-AACG-ATAAGCGG-
gi|4 : tgtcTTAT-TTT--ATTA-GCATAAAA-------ACCAAGTGA-----GTCAAA-TGTTA-AGTTCT-AAA---AC--TGCTTT-ATGAAATCGTCC-AATGAAA-ATGA-GT--TTAC-ATT--AAGGAAG--ATCC--TTGCTAAATA-AT----CAG-T--CAGTT--CTCGTTCA-TGG--CC--AT-TTGAC---------G-----TA----TTTTC-----------------------------C-----A-TCCA---AAAC-T-TCTT-CTTCTC---ATG-C--ACAACCG---G-TCTTT--CTCAATGCACAAA-CATGA--TGATCTCATG-GACAACATTTTCT-TT-TTGGAG--AT----GATAAA-ATTATAT--TTAT--T--ACAT-TGGTAATG-AAAAAC-T-TTGTTATAGATGATGG---GGGGGG--G---TAAAACAGAATATTTAACAGATTGATCGT--GATAC-AAATAATG---ATAAAGTTT-AGGAA--T-ACTAAC----AAAGTGCAAACA--TATTTTCCCTAGGTAG-AACCTGGG-CAAAAGATTTTTGC--AAGG-AAAAT--A------CTGACAGTCC--TGT---------ATCATTTGG-TACG-GA-AGAAACATC--CCTTGGCCTA-CTG-T-ATCACATCG-TCCG--ATTGACGAAATACCCT-AATAAT-AAGCTCTATATTTT--CTT--A--------CA--------TTAGC--AACGT-GG-TTGTTG--TTTTC-ACTC-G-A-TCTAA--TGC-AG-CA-A-CCGGAAGTTCGTTCTC-ATGA---TTTTATTG-CAA-AACAT--TTG---GTTGTGCA-AGAGGAACG-ATAAGCGT-CGTcgtg
gi|5 : tga-AGTTCT-AAA---AC--TGCTTT-GCGAAATCGTCC-AATGAAA-ATGA-G---TTAT-ACGAAAAGGAAG--ATCC--TTGCTAAATA-AC----CAG-T--CATTC-ATTCGTTCAATGG--CC---------C---------A-----T-----TTTCC---GC-A---G----GGTT---TTTTTTCC-----A-TCCA---AAAC-T-TCT--CTTCTG---AAG-C--ACAACCG---GTT--TT--CTCA-TG--CACA-CA-------------------GACATTTTCT-TT-T-TGGT-CATG---G-TAAA-ATTATAT--TTAT--TC-ACATATTGGAAAGAAAAATCTTGT--TTA--GAA--TGA---AGGAGG--G-TTTAAAA-AGAATATTTA-CAGATTGATCGT--GGTTA-CAATAATGGTA--AAGGTTT-AGGAAg
gi|12 : TCTC---ATG-C--ACAACCGTAAG-TCGTT--CTCA-TG--------AT-T--T--TCTT-TG-CATAACATTTtactaa
gi|15 : aatataaggcttaaattttcttatcatagcaacgtggttgtagttttaactcgaAACATTTTCTCTT-C-GG-T-TAT----GGTAAA-ATTATAT--TTAT--TCCACAT-T-GGCAAG-AA-----------T---GATA-TGA----GGAGG--GTTTAAAAA-AGAATATTTA-CGGATTGATCGT--Gggttgtgcaagagaaggataagcggccgtg
gi|17 : aCATTTTCT-TTTC-GGGT-TAT----GGTAAA-ATTATAT--TTAT--TC-ACAT-Tata
gi|7 : AATACGCACA--T---TTTCCCAAGTTG-AACCTGGGGCAAAA--CTTTTGC--A--GGAAAAT--A------TGAGCAGTCCTGTATGAA-ATAA-ATCATTTGG-TACG-GA-AGACAAATC--CCTTGGCC-A-CTG-C-ATCACATC-GTCCG--ATTGACAGAATACC-T-AATATACAAGCTTAA-A--------------------CG--------T--GC---ACGT--G-TTGTGG--TTTT-------------------------CG-A-CTGGAAG-TCGTTCTT-ATGA--------TTA-C---AACAT--TTG---GTTGTGCA-AGAG-AACG-ATAAGCGG-ggcaa
gi|6 : aatggtaaggtttaggCA--T---TTCCCTACGGTG-A-ACCGGGGCAAA---CTTCTGCTAG--G-AAAAT--A------TAAGGAGTCCTGTATGAA-GTAACATCATTTGG-TACG-GA-AGACAAAT---CCTTGGCC-A-C-G---ATTA-ATCG-TCCG--ATTGACGAA-TACC-C-AATATA---GCTCAA-ACTTT--CTT--A--------CT--------T-AGC--AACGC-GG-TTGTTG--TTTTTTACTC-G-A-TCTAA--TGC-A--CACA-CCGGA-G-TCGTTCTC-ATGATTTTCT--TTGCCAC-AACAT--TTG---GTTGTGCAAAGAG-AACG-ATAAGCGG-cgtg
gi|9 : AA-GTCATTTGG-TACG-GA-AGATAAATC--CCTTGGCC-A-CTC-C-ATCACATTG-TCCG--ATTGACGAAATACC-T-ATTATA-AAGCTCAA-ATTTT--CTT--AACTAATATAAACT-----T-AGC--AACGT-GG-TTGTTG--TTTTC-ACTC-A-A-TCTAA--TGC-A--CA-A-CCGGAAG-TCGTTCTC-AATCAGTTCT--TTG-CAC-AACAT--TTT---GTTGTGCA---AGAGACG-ATAAGAGGTCGTcgtg
gi|10 : aTCATTTG--TACG-GA-AGATAAATC--CCTTG-CC-A-CTC-C-ATCACATTG-TCCG--ATTGACGAAATACC-T-ATTATA-AAGC-AAA-ATTTT--CTT--AAC-----TAATATAAACTT-AGCA-AACGT-GGTTTGTTG----TTC-ACT--A-A-TCTAA---GC-A--CA-A-CC-GAAG-TCG-TCT--ATGATTTTCT--TTG-CAC-AACAT--TTT---GTTGT---CAGAG--ACG-ATAAGAGGTCGTg
gi|16 : TACC-T-AATATA-AGGCTCAA-ATTTT--CTT--T-------TCA--------T-AGC--AATGT-GT-TTGTTG--TTTTC-ACTC-G-A-TCTCA--TGC-A--g
gi|12 : -AATATA-AGGCTTAA-ATTTT--CTT--A-------TCA--------T-AGC--AACGT-GG-TTGTAG--TTTTA-ACTC-G-A-TCTCA--TGC-A--CA-A-CCGTAAG-TCGTTCTC-ATGATTTTCT--TTG-CAT-AACAT--TTG---GTTGTGCA-AGAGAA--GGATAAGCGG-
gi|11 : -AATATA-G-GCTTAA-ATTTTTTCTT--AA------TCA--------T-AGC--AACGTGGG-TTGTAGGTTTTTA-ACTC-G-GCTCTCA--TGC-AC-CA-A-CCGTAAG-TCGTTCTCAATGATTTTCT--TTG-CAT-AACA---TTG---GTTGTGCA-AGAGAAA--GATAAGC-G-CGTcgtg
gi|14 : TATA-AAGCTCAA-TTTTT--TTTTTA-------CCT--------T-TGC--AACGT-GG-TTG-----TTTTC-ACTC-G-A-TCTAA--TGC-A--CA-A-TCGGAAG-TCGTTCTC-TTGATTTTCT--TTG-CAC-AACAC--TTG---GTTGTGCA-AGA-AAACG-ATAAGCGG-g
gi|13 : --------T-AGCTTAACGT-GG---GTTG--TTT-C-ACTCCG-A-TTACAGATGCGA--CA-A-TCGGAAT-TCGT-CTT-ATGA-TTTCTTCT-G-CAC-AACAC--T-G---GTTGTGCATAAGAAAACG-ATAAGcgtg
1 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|18 ): GTTGTGTAAGAGAACGATAAGCGGCCGTG
Alignments
lowQualScore : 1 11 1 11 11 11 333 444444444444444444444 11111 11111111 22222 1111111 222 11111 11111 55555555555555555555555555555555555555555555 1111 111 22222222 1 1 22222 1 111 111 1 1 1111 111 1111 22 1111111 222 222222 1 44444444444444444
lowQualScore : 0 33 3 0 33 33 0 88 11 777 777777777777777777777 3 99999 66666666 6 1 2 6 6 11111 6 3333333 6 000 99 66666 6 99 88 1 99 00000 4 99999999999999999999999999999999999999999999 6 5 4444 6 111 6 66666666 6 99 9 6 8 6 5 88888 5 8 5 5 1 666 000 5 77 999 5 5 666 6 3 3 0 4 5555 444 3 6 6 6 99 1111 33 6 99 6 6 9999999 000 9 99 3 55 888888 1 6 5 5 5 5 5 66 0 0 888 5 5 66 4 4 44 3 3 44 22222222222222222 77 6 77 3 3 3 1 44 3 3 77 3 3 3 3 3 44 44 6 3 44 555 3 77 88 3 6
lowQualScore : . .. . . .. .. . .. .. ... ..................... . ..... ........ . . . . . ..... . ....... . ... .. ..... . .. .. . .. ..... . ............................................ . . .... . ... . ........ . .. . . . . . ..... . . . . . ... ... . .. ... . . ... . . . . . .... ... . . . . .. .... .. . .. . . ....... ... . .. . .. ...... . . . . . . . .. . . ... . . .. . . .. . . .. ................. .. . .. . . . . .. . . .. . . . . . .. .. . . .. ... . .. .. . .
lowQualScore : 0 88 2 0 22 88 8 88 00 222 000000000000000000000 8 88888 88888888 7 0 5 7 7 55555 7 2222222 7 000 22 77777 7 22 33 7 22 00000 3 77777777777777777777777777777777777777777777 7 7 2222 7 777 7 22222222 7 22 6 0 0 0 0 44444 6 0 7 7 4 000 000 7 99 333 7 7 333 7 2 2 8 0 2222 888 5 7 7 7 22 4444 33 7 22 7 7 6666666 888 0 22 7 22 333333 0 7 7 0 0 0 0 99 2 0 222 0 0 99 4 4 77 3 1 22 66666666666666666 33 2 33 1 1 1 5 22 1 1 33 3 3 3 3 3 66 66 7 3 66 444 1 33 88 1 7
consensus : GTGTTGAT-TA--TAGTTTG-TAATAGAAT-AG--TTTAT-TCT--GT---GCATAAAA-------AC-GAGTGT-----TTCAAAATTTTA-AGTTCTAAA---A-C--TGCTTT-GCGAAATCGTCC-AATGAAA-ATGA-GT--TTAT-ATTGA---AAAGA-AG-AATCC--TTGCTAAATAATC-----AG-T--CATTT-ATTCGTTCAATGG--CC--AT-TTGGC---------G----------TATTTT--C-G-GC-AG-G-----TT-TTTTTTC----A-TCCA---AAAC-TTCTN-----TTCTCATG-C--ACAACCGGTTTTTCTCA-TGCACACACAT-A--TGATCTCATG-CACAACATTTTC-T-TT-CGGAT-CAT---GGTAAA-ATTATAT--TTA-T-TC-A-CAT-TCGGAAAG-AAAATCTTTTGTTAGA-ATGA---AGGAGGGT--TTTAAAA-AGAATATTT-A-CAGATTGATCGT--GGTNCA-AATAATGGTAATAAGGTTT-AGGAA--T-AC-TAAT--CAAAAATGCACACA---TTTCCCTAGGTTGAACCTGGGGCAAA--ACTTNTGCAAGGAAAAT------ATAAGCAGTCCTGTATGAA-ATAA-ATCATTT-GGT-ACG-GA-AGACAAA--TCCCTTGGCC-ACTG-C-ATCACA-TCG-TC--CGATTGACGAAATA-CC-TAATATA-AAGCTC-AAA-TTTT--CTT--A--T-CA--------TAGC--AACGTGG-TTGTTG--TTTTCACTC-G-A-TCTCA--TG-C-A--C-A-A-CCGGAAG-TCGTTCTC-ATGATT--TTCT--TTG-CAC-AACAT--TTG---GTTGTGC-A--AGAGAAACG-ATAAGCGG-CGT
Reference ( family-1845 ) : GTGTTGAT-TA--TAGTTTG-TAATAGAAT-AG--TTTAT-TCT--GTC--GCATAAAA-------AC-GAGTGT-----TTCAAAATTTTA-AGTTCTAAA---A-C--TGCTTT-GCGAAATCGTCC-AATGAAA-ATGA-GT--TTAT-ACTGA---AAAGA-AG-AATCC--TTGCTAAATAATC-----AG-T--CATTT-ATTCGTTCAATGG--CC--AT-TTGAC---------G----------TATTTT--C-G-GC-AG-G-----TT-TTTTTTC----A-TCCA---AAAC-TTCTN-----TTCTCATG-C--ACAACCGGTCTT-CTCA-TGC-CACACAT-A--TGATCTCATG-CACAACATTTTC-T-TT-CGGAT-CAT---GGTAAA-ATTATAT--TTA-T-TC-A-CAT-TCGGAAAG-AAAATCTTTTGTTAGANATGA---AGGAGGGT--TTTAAAA-AGAATATTT-A-CAGATTGATCGT--GGTNCN-AATAATGGTAACAAGGTTT-AGGAA--T-AC-TAAT--CAAAAATGCACACA---TTTCCCTAGGTTGAACCCGGGGCAAA--ACTTCTGCAAGGAAAAT------ATAAGCAGTCCTGTATGAA-ATAA-ATCATTT-GGT-ACG-GA-AGACAAA--TCCCTTGGCC-ACTG-C-ATCACA-TCG-TC--CGATTGACGAAATA-CC-TAATATA-AAGCTC-AAA-TTTT--CTT--A--T-CA--------TAGC--AACGTGG-TTGTTG--TTTTCACTC-G-A-TCTCA--TG-C-A--C-A-A-CCGGAAG-TCGTTCTC-ATGATT--TTCT--TTG-CAC-AACAT--TTG---GTTGTGC-A--AGAGAAACG-ATAAGCGG-CGT
gi|1 : GTTGATGTA--TAGTTTG-TAATAGAATTAGGTTTTATCTCT--GTCCAGCATTAAATTATAATAC-GAATGTAACTGTTCAAAATT--AGAGTTCTAAATAAA-CCCTGCTTTTGCAAAATCGTCC-A-TGATATATCATGTAATTATTACTGATAAAAGGA-AG-A--CC--CTGC-AAATAATTGTCGTAG-T--CATTC-ATTCCTTCGATGGTCCC--AT-TTTTC---------GGTCTTTGCTCTTTTTC--C-GAGCTAGTG-----TTGTTTTTTC----A-TCCAGTAAAACCTTCTCCATTCTTCTTATG-CCCACAACCAGTTTTTCTCA-TGCACA-ACAT-GACTGATCTCATGTCACAACATTTTC-T-TTTCGGATTCATCCGGGTAAA-ATTATATATTTA-G-TC-A-CAT-GCGAAAAG-AAAATCTTTT-TTAGA-ATGATCTAG-AGGGT--TT-AAAA-AGAATATTC-ATCAGATTGATCGTCTGGTTTACAATAATTGTAAC--GGTTTTAAGAA--T-ACCTAATTTCATAAATGCACATA---TTTCCCTAGGTTGAACCCGTGGCAAA--ATTTCTGCAAGGAAAATAGTGTGATAAGCAGTTCTGTATGAATATAA-ATCATTTGGGT-ACG-GA-AGACAAATTTCCCTTGGCCAACTGTC-ATCACATTCG-TCCGCGATTTAC-AAATA-CCTTAATAT--AAGCTC-AAATTTTT--CTT--A--A-C---------TTGC--AACGTGG-GTTTTC--TTTTCAATC-A-T-TCTCA--TGCC-A--C-A-A-CCGGAAG-TCGTTCTC-ACGATT--TTCT--TTG-CAC-AACATGGTTGGAAGTTGTGC-A--AGAG-AACG-ATAAGCGG-
gi|10 : tgtcTCATTT-G-T-ACG-GA-AGATAAA--TCCCTTG-CC-ACTC-C-ATCACA-TTG-TC--CGATTGACGAAATA-CC-TATTATA-AAGC-A-AAA-TTTT--CTT--AACT-AATATAAACTTAGCA-AACGTGGTTTGTTG----TTCACT--A-A-TCTAA---G-C-A--C-A-A-CC-GAAG-TCG-TCT--ATGATT--TTCT--TTG-CAC-AACAT--TTT---GTTGT-C------AGAGACG-ATAAGAGGTCGTcgtg
gi|11 : AATATA-G-GCTT-AAA-TTTTTTCTT--AA-T-CA--------TAGC--AACGTGGGTTGTAGGTTTTTAACTC-G-GCTCTCA--TG-C-A--CCA-A-CCGTAAG-TCGTTCTCAATGATT--TTCT--TTG-CAT-AACA---TTG---GTTGTGC-A--AGAGAAA-G-ATAAGC-G-CGTg
gi|12 : AATATA-AGGCTT-AAA-TTTT--CTT--A--T-CA--------TAGC--AACGTGG-TTGTAG--TTTTAACTC-G-A-TCTCA--TG-C-A--C-A-A-CCGTAAG-TCGTTCTC-ATGATT--TTCT--TTG-CAT-AACAT--TTG---GTTGTGC-A--AGAGAAG-G-ATAAGCGG-g
gi|13 : -TCTT--TTT--G--TACT--------TAGCTTAACGTGG---GTTG--TTT-CACTCCG-A-TTACAGATG-CGA--C-A-A-TCGGAAT-TCGT-CTT-ATGATT--TCTT--CTG-CAC-AACAC--T-G---GTTGTGC-ATAAGA-AAACG-ATAAGcgtg
gi|14 : ataacggctcgtTATA-AAGCTC-AAT-TTTT--TTTTTA--C-CT--------TTGC--AACGTGG-TTG-----TTTTCACTC-G-A-TCTAA--TG-C-A--C-A-A-TCGGAAG-TCGTTCTC-TTGATT--TTCT--TTG-CAC-AACAC--TTG---GTTGTGC-A--AGA-AAACG-ATAAGCGG-gccg
gi|15 : AACATTTTC-TCTT-CGG-T-TAT---GGTAAA-ATTATAT--TTA-T-TCCA-CAT-T-GGCAAG-AA----------T-GATATGA----GGAGGGT--TTAAAAA-AGAATATTT-A-CGGATTGATCGT--GATcgtg
gi|16 : aTA-CC-TAATATA-AGGCTC-AAA-TTTT--CTT--T--T-CA--------TAGC--AATGTGT-TTGTTG--TTTTCACTC-G-A-TCTCA--TG-C-A--a
gi|17 : CATTTTC-T-TTTCGGGT-TAT---GGTAAA-ATTATAT--TTA-T-TC-A-CAT-T
gi|18 : ---GTTGTGT-A--AGAGAA-CG-ATAAGCGG-ggcaa
gi|2 : GTGTTGAT-TA--TAGTTTG-TAATAGAA--AG--TTTAT-TCT--GT---GCATAAAA-------AC-AAGTGT-----TTCAAAATTTTA-AGTTCTAAA---A-C--TGCATT-GCGAAATCGTCC-AATGAAA-ACGA-GT--TTAT-ATTGA---AAAGA-AGTAATCC--TTGCTAAATATTC-----AG-T--CATTT-ATTCGTTCAATGG--CC--AT-TTGGC---------G----------TATTTT--C-G--C-AG-G-----TT-TTTTG-C----A-TCCA---AAAC-TTCTA-----TTCTCATG-C--ACAACCGGT-TT-CTCA-TGC-CACACAT-A--TGATCTCATG-CACAACATTTTC-T-TT-CGGAT-CAT---G-TAAAGATTATAT--TTG-G-TC-AACAT-TTGGAAAG-AAAATCTGTCGTTAGAT-TGA---AGGAGGGC--TTTAAAA-AGAATATTT-A-CAGATTGATCGT--GGCGTC-AATAATGGTAATAAGGTTT-AAGAAAATGAC-TAAT--CAAAAATGCACACA---TTTCCCTAGGTTGA-CCTGGGGCAAA--ACTTGTGCA--GAAAAT------ATAAGCAGTTC-GTATGAA-ATAA-ATCATTT-GGT-ACG-GA-AGACAAA--TTCCTTGGCC-ACTG-C-ATCACA-TCGGTC--CGATTGACGAAATA-CC-TAATATA-AAGCTC-AAA-TTTC--CTT--A--T-CA--------TAGC--AACGTGG-TTGTTG--TTTTCACTC-G-A-TCTCA--TG-C-A--C-A-A-CCGGAAG-TCGTTCTC-ACGAAT--TTCTTCTTG-CAT-AACAT--TTG---GTTGTGC-AC-AGAGAAACGAATAAGCGG-CGTcgtg
gi|3 : GTGTTGAT-TACATAGCTTGGTAATAGAAT-AG--TT-AT-TCTCTGT---GCATAAAA---------------------TTCATAGTT-----GTTC---A---A-------TTT-A------------AATGAAA-ATGA--T--TGGT-ATTGA---AAAGGGAG-ATTCC--TTGCTAAATAAAC-----AG-TTACATTTCATCCGTTCAATGG--CCCCAT-TTGGC---------G----------TATTTT--TTG-GCCAG-G-----TT-TTTTTTTCTTTA-TCCA---AAAT-TT--A-----TTCTCATG-C--ACA-CCG-TTTT-CTCA-TGC--ACACA--A--TGA-CTCATG-CACAACATTTT--T-TT-CGGAT-CAT---GGTAAA-AATATAT--TTGGTATC-A-CAT-T-GGAAAG-AAA-TTTTTTGTTAGAGATGA---AGGAGGGTGTTTTAAAA-AGATTACTT-A-CATATTGATTGT--GGTACA-GATAATGGTAA--AGGTTT-AAGAA--T-AC-TA-T--CAAAAATGCACACAAT-TTCCCCTAGGTTGAACCTGGGGCAAA--ACTTGTGCAGTGAAAATTA----ATAA-CAGTTCTGTATAAA-ATAA-ATCATTT-GGTTACGTGAGAGACAAA--TTCCTTGGCC-ACTG-CAATCACA-TCG-T---CGATTGATGAATTA-CC-TAATATA-AGGCTC--AA-TTTT--CTT--AT-T-CA--------TAGC--AGCGTGG-TTGTTG---TTTCACTC-GAA-TCTCA--TG-C-ACCC-A-ACCCGGAAG--CGTTCTC-ATA--T--TTCT--TTGCCATAAACAT--TT----GTT-TGC-A--AGA-AGACG-ATAAGCGG-
gi|4 : TTAT-TTT--ATTA-GCATAAAA-------ACCAAGTGA-----GTCAAA-TGTTA-AGTTCTAAA---A-C--TGCTTT-ATGAAATCGTCC-AATGAAA-ATGA-GT--TTAC-ATT-----AAGGA-AG-A-TCC--TTGCTAAATAATC-----AG-T--CAGTT--CTCGTTCA-TGG--CC--AT-TTGAC---------G----------TATTTT--C------------------------C----A-TCCA---AAAC-TTCTTC----TTCTCATG-C--ACAACCGGTCTTTCTCAATGCACAAACATGA--TGATCTCATG-GACAACATTTTCTT-TT-TGGA--GAT---GATAAA-ATTATAT--TTA-T-T--A-CAT-TGGTAATG-AAAAAC-TTTGTTATAGATGA---TGGGGGGG--GGTAAAACAGAATATTTAA-CAGATTGATCGT--GATACA-AATAATG---ATAAAGTTT-AGGAA--T-AC-TAAC----AAAGTGCAAACATATTTTCCCTAGGTAGAACCT-GGGCAAAAGATTTTTGCAAGGAAAAT------ACTGACAGTCCTGT-----------ATCATTT-GGT-ACG-GA-AGAAACA--TCCCTTGGCCTACTG-T-ATCACA-TCG-TC--CGATTGACGAAATACCC-TAATAAT-AAGCTCTATA-TTTT--CTT--A----CAT-------TAGC--AACGTGG-TTGTTG--TTTTCACTC-G-A-TCTAA--TG-C-AG-C-A-A-CCGGAAGTTCGTTCTC-ATGATT--TTA---TTG-CAA-AACAT--TTG---GTTGTGC-A--AGAGGAACG-ATAAGCGT-CGTcgtg
gi|5 : tga-AGTTCTAAA---A-C--TGCTTT-GCGAAATCGTCC-AATGAAA-ATGA-G---TTAT-AC-GA---AAAGG-AA-GATCC--TTGCTAAATAACC-----AG-T--CATTC-ATTCGTTCAATGG--CC------------------------------CATTTT--C-C-GC-AG-GGT---TT-TTTTTCC----A-TCCA---AAAC-TTCTC-----TTCTGAAG-C--ACAACCGGTTTT-CTCA-TG--CACACA-------------------GACATTTTC-T-TT-TTGGT-CAT---GGTAAA-ATTATAT--TTA-T-TC-A-CATATTGGAAAGAAAAATCTTGT-TTAGA-ATGA---AGGAGGG---TTTAAAA-AGAATATTT-A-CAGATTGATCGT--GGTTAC-AATAATGGTA--AAGGTTT-AGGAA--T-AC-TAAg
gi|6 : CA---TTTCCCTACGGTGAACC-GGGGCAAA---CTTCTGCTAGGAAAAT------ATAAGGAGTCCTGTATGAA-GTAACATCATTT-GGT-ACG-GA-AGACAAA--T-CCTTGGCC-AC-G---ATTA-A-TCG-TC--CGATTGACG-AATA-CC-CAATAT---AGCTC-AAA-CTTT--CTT--A----CT--------TAGC--AACGCGG-TTGTTGT-TTTTTACTC-G-A-TCTAA--TG-C-A--C-ACA-CCGG-AG-TCGTTCTC-ATGATT--TTCT--TTGCCAC-AACAT--TTG---GTTGTGCAA--AGAG-AACG-ATAAGCGG-
gi|7 : AATGGTAA---GGTTT-AGGAA--T-A----------------CGCACA---TTTTCCCAAGTTGAACCTGGGGCAAA--ACTTTTGC-AGGAAAAT------ATGAGCAGTCCTGTATGAA-ATAA-ATCATTT-GGT-ACG-GA-AGACAAA--TCCCTTGGCC-ACTG-C-ATCACA-TCG-TC--CGATTGACAGAATA-CC-TAATATACAAGCTT-AAA-----------------CG--------T-GC---ACGT-G-TTGTGG--TTTT-------------------------C-G-A-CTGGAAG-TCGTTCTT-ATGATT-------------AC-AACAT--TTG---GTTGTGC-A--AGAG-AACG-ATAAGCGG-cgtg
gi|8 : GTGTTGAT-TA--TGGTT-----GTAGAAT-AG--TTTAT--CT--GTG--GCATAAAA-------AC--AGTGT-----TT--AAATTTTG----TCTAAA---AAC--TGCTTT-ACAAAAT-GTCCGAAT-AAA-ATGA-G---TGAT-A-TAA---AAAGA-AG--ATCCGGTTGCTAGAGAATC-----AATT--CATTT-GT--GTTCAATGG--GC--ATCTTGACAGTGCTATAA----------TATTTTCAC-G-CC-CG-GTGTATTT-TTTTTTC----ATTCCA---AAAC-T--AT-----TTCTCATGCC--ACAAcgtg
gi|9 : AA-GTCATTT-GGT-ACG-GA-AGATAAA--TCCCTTGGCC-ACTC-C-ATCACA-TTG-TC--CGATTGACGAAATA-CC-TATTATA-AAGCTC-AAA-TTTT--CTT--AACT-AATATAAACTTAGC--AACGTGG-TTGTTG--TTTTCACTC-A-A-TCTAA--TG-C-A--C-A-A-CCGGAAG-TCGTTCTC-A--ATCAGTTCT--TTG-CAC-AACAT--TTT---GTTGTGC-A--AGAG--ACG-ATAAGAGGTCGT
Alignments
lowQualScore : 1 11 1 11 11 11 333 444444444444444444444 11111 111 22222 111 222 11111 11111 55555555555555555555555555555555555555555555 1111 111 22222222 2222222 111 111 111 1 111 111 1 1111 22 1111111 111111 222222 1 33333333333333333
lowQualScore : 0 33 3 0 33 33 0 88 11 333 777777777777777777777 3 99999 6 111 99 6 1 2 6 6 11111 6 9 1 111 6 000 99 66666 6 99 88 1 99 00000 3 99999999999999999999999999999999999999999999 6 5 4444 6 111 6 66666666 6 99 5 0 8 0 5 9999999 5 8 5 111 2 77 000 5 77 999 5 5 666 6 3 88 3 111 444 3 6 3 99 1111 11 6 99 6 6 9999999 111111 1 99 1 55 888888 1 1 6 5 5 5 5 5 66 0 888 5 5 66 0 8 3 0 3 3 44 99999999999999999 3 77 6 44 3 3 3 3 1 44 3 3 77 3 3 3 3 3 44 44 6 3 44 555 3 77 88 3 6
lowQualScore : . .. . . .. .. . .. .. ... ..................... . ..... . ... .. . . . . . ..... . . . ... . ... .. ..... . .. .. . .. ..... . ............................................ . . .... . ... . ........ . .. . . . . . ....... . . . ... . .. ... . .. ... . . ... . . .. . ... ... . . . .. .... .. . .. . . ....... ...... . .. . .. ...... . . . . . . . . .. . ... . . .. . . . . . . .. ................. . .. . .. . . . . . .. . . .. . . . . . .. .. . . .. ... . .. .. . .
lowQualScore : 0 88 2 0 22 88 8 88 00 000 000000000000000000000 8 88888 7 777 22 7 0 5 7 7 55555 7 8 0 777 7 000 22 77777 7 22 33 7 22 00000 7 77777777777777777777777777777777777777777777 7 7 2222 7 777 7 22222222 7 22 6 8 0 8 0 0000000 6 0 7 777 3 44 000 7 99 333 7 7 333 7 2 33 3 777 888 5 7 3 22 0000 00 7 22 7 7 6666666 888888 7 22 0 22 333333 0 0 7 7 0 0 0 0 99 0 222 0 0 99 4 9 3 8 3 1 22 55555555555555555 1 33 2 22 1 1 1 1 5 22 1 1 33 3 3 3 3 3 66 66 7 3 66 444 1 33 88 1 7
consensus : GTGTTGAT-TA--TAGTTTG-TAATAGAAT-AG--TTTAT-TCT--GT---GCATAAAA-------AC-GAGTGT-----TTCAAAATTTTA-AGTTCT-AAA---AC--TGCTTT-GCGAAATCGTCC-AATGAAA-ATGA-GT--TTAT-ATTGA---AAAGA-AG-AATCC--TTGCTAAATAATC-----AG-T--CATTT-ATTCGTTCAATGG--CC--AT-TTGGC---------G----------TATTTT--C-G-GC-AG-G-----TT-TTTTTTC----A-TCCA---AAAC-TTCTN-----TTCTCATG-C--ACAACCGGTTTTTCTCA-TGCACACACAT-A--TGATCTCATG-CACAACATTTTCT-TT-C-GGAT-CAT---GGTAAA-ATTATAT--TTA-T-T-CA-CAT-TCGGAAAG-AAAATCTTTTGTTAGA-ATGA---AGGAGGGT--TTTAAAA-AGAATATTTA-CAGATTGATCGT--GGTNCA-AATAATGGTAATAAGGTTT-AGGAA--T-AC-TAAT--CAAAAATGCACACA--T---TTCCCTAGGTTGAACCTGGGGCAAAA--CTTNTGCAAGGAAAAT------ATAAGCAGTCCTGTATGAA-ATAA-ATCATTT-GGT-ACG-GA-AGACAAA--TCCCTTGGCC-ACTG-C-ATCACA-TCG-TC--CGATTGACGAAATACC-TAATATA-AAGCTCAA-A-TTTT--CTT--A--T-CA--------T-AGC--AACGTGG-TTGTTG--TTTTC-ACTC-G-A-TCTCA--TG-C-A--C-A-A-CCGGAAG-TCGTTCTC-ATGATT--TTCT--TTG-CAC-AACAT--TTG---GTTGTGC-A--AGAGAAACG-ATAAGCGG-CGT
Reference ( family-1845 ) : GTGTTGAT-TA--TAGTTTG-TAATAGAAT-AG--TTTAT-TCT--GT---GCATAAAA-------AC-GAGTGT-----TTCAAAATTTTA-AGTTCT-AAA---AC--TGCTTT-GCGAAATCGTCC-AATGAAA-ATGA-GT--TTAT-ATTGA---AAAGA-AG-AATCC--TTGCTAAATAATC-----AG-T--CATTT-ATTCGTTCAATGG--CC--AT-TTGGC---------G----------TATTTT--C-G-GC-AG-G-----TT-TTTTTTC----A-TCCA---AAAC-TTCTN-----TTCTCATG-C--ACAACCGGTTTTTCTCA-TGCACACACAT-A--TGATCTCATG-CACAACATTTTCT-TT-C-GGAT-CAT---GGTAAA-ATTATAT--TTA-T-T-CA-CAT-TCGGAAAG-AAAATCTTTTGTTAGA-ATGA---AGGAGGGT--TTTAAAA-AGAATATTTA-CAGATTGATCGT--GGTNCA-AATAATGGTAATAAGGTTT-AGGAA--T-AC-TAAT--CAAAAATGCACACA--T---TTCCCTAGGTTGAACCTGGGGCAAAA--CTTNTGCAAGGAAAAT------ATAAGCAGTCCTGTATGAA-ATAA-ATCATTT-GGT-ACG-GA-AGACAAA--TCCCTTGGCC-ACTG-C-ATCACA-TCG-TC--CGATTGACGAAATACC-TAATATA-AAGCTCAA-A-TTTT--CTT--A--T-CA--------T-AGC--AACGTGG-TTGTTG--TTTTC-ACTC-G-A-TCTCA--TG-C-A--C-A-A-CCGGAAG-TCGTTCTC-ATGATT--TTCT--TTG-CAC-AACAT--TTG---GTTGTGC-A--AGAGAAACG-ATAAGCGG-CGT
gi|1 : GTTGATGTA--TAGTTTG-TAATAGAATTAGGTTTTATCTCT--GTCCAGCATTAAATTATAATAC-GAATGTAACTGTTCAAAATT--AGAGTTCT-AAATAAACCCTGCTTTTGCAAAATCGTCC-A-TGATATATCATGTAATTATTACTGATAAAAGGA-AG-A--CC--CTGC-AAATAATTGTCGTAG-T--CATTC-ATTCCTTCGATGGTCCC--AT-TTTTC---------GGTCTTTGCTCTTTTTC--C-GAGCTAGTG-----TTGTTTTTTC----A-TCCAGTAAAACCTTCTCCATTCTTCTTATG-CCCACAACCAGTTTTTCTCA-TGCACA-ACAT-GACTGATCTCATGTCACAACATTTTCT-TTTC-GGATTCATCCGGGTAAA-ATTATATATTTA-G-T-CA-CAT-GCGAAAAG-AAAATCTTTT-TTAGA-ATGATCTAG-AGGGT--TT-AAAA-AGAATATTCATCAGATTGATCGTCTGGTTTACAATAATTGTAAC--GGTTTTAAGAA--T-ACCTAATTTCATAAATGCACATA--T---TTCCCTAGGTTGAACCCGTGGCAAAA--TTTCTGCAAGGAAAATAGTGTGATAAGCAGTTCTGTATGAATATAA-ATCATTTGGGT-ACG-GA-AGACAAATTTCCCTTGGCCAACTGTC-ATCACATTCG-TCCGCGATTTAC-AAATACCTTAATAT--AAGCTCAA-ATTTTT--CTT--A--A-C---------T-TGC--AACGTGG-GTTTTC--TTTTC-AATC-A-T-TCTCA--TGCC-A--C-A-A-CCGGAAG-TCGTTCTC-ACGATT--TTCT--TTG-CAC-AACATGGTTGGAAGTTGTGC-A--AGAG-AACG-ATAAGCGG-
gi|10 : tgtcTCATTT-G-T-ACG-GA-AGATAAA--TCCCTTG-CC-ACTC-C-ATCACA-TTG-TC--CGATTGACGAAATACC-TATTATA-AAGC-AAA-A-TTTT--CTT--AACT-AATATAAACTT-AGCA-AACGTGGTTTGTTG----TTC-ACT--A-A-TCTAA---G-C-A--C-A-A-CC-GAAG-TCG-TCT--ATGATT--TTCT--TTG-CAC-AACAT--TTT---GTTGT-C------AGAGACG-ATAAGAGGTCGTcgtg
gi|11 : AATATA-G-GCTTAA-A-TTTTTTCTT--AA-T-CA--------T-AGC--AACGTGGGTTGTAGGTTTTTA-ACTC-G-GCTCTCA--TG-C-A--CCA-A-CCGTAAG-TCGTTCTCAATGATT--TTCT--TTG-CAT-AACA---TTG---GTTGTGC-A--AGAGAAA-G-ATAAGC-G-CGTg
gi|12 : AATATA-AGGCTTAA-A-TTTT--CTT--A--T-CA--------T-AGC--AACGTGG-TTGTAG--TTTTA-ACTC-G-A-TCTCA--TG-C-A--C-A-A-CCGTAAG-TCGTTCTC-ATGATT--TTCT--TTG-CAT-AACAT--TTG---GTTGTGC-A--AGAGAAG-G-ATAAGCGG-g
gi|13 : -TCTT--TTT--G--TACT--------T-AGCTTAACGTGG---GTTG--TTT-C-ACTCCG-A-TTACAGATG-CGA--C-A-A-TCGGAAT-TCGT-CTT-ATGATT--TCTT--CTG-CAC-AACAC--T-G---GTTGTGC-ATAAGA-AAACG-ATAAGcgtg
gi|14 : ataacggctcgtTATA-AAGCTCAA-T-TTTT--TTTTTA--C-CT--------T-TGC--AACGTGG-TTG-----TTTTC-ACTC-G-A-TCTAA--TG-C-A--C-A-A-TCGGAAG-TCGTTCTC-TTGATT--TTCT--TTG-CAC-AACAC--TTG---GTTGTGC-A--AGA-AAACG-ATAAGCGG-gccg
gi|15 : AACATTTTCTCTT-C-GG-T-TAT---GGTAAA-ATTATAT--TTA-T-TCCA-CAT-T-GGCAAG-AA-------TGAT----ATG----AGGAGGGT--TTAAAAA-AGAATATTTA-CGGATTGATCGT--GATcgtg
gi|16 : aTACC-TAATATA-AGGCTCAA-A-TTTT--CTT--T--T-CA--------T-AGC--AATGTGT-TTGTTG--TTTTC-ACTC-G-A-TCTCA--TG-C-A--a
gi|17 : CATTTTCT-TTTC-GGGT-TAT---GGTAAA-ATTATAT--TTA-T-T-CA-CAT-T
gi|18 : ---GTTGTGT-A--AGAGAA-CG-ATAAGCGG-ggcaa
gi|2 : GTGTTGAT-TA--TAGTTTG-TAATAGAA--AG--TTTAT-TCT--GT---GCATAAAA-------AC-AAGTGT-----TTCAAAATTTTA-AGTTCT-AAA---AC--TGCATT-GCGAAATCGTCC-AATGAAA-ACGA-GT--TTAT-ATTGA---AAAGA-AGTAATCC--TTGCTAAATATTC-----AG-T--CATTT-ATTCGTTCAATGG--CC--AT-TTGGC---------G----------TATTTT--C-G--C-AG-G-----TT-TTTTG-C----A-TCCA---AAAC-TTCTA-----TTCTCATG-C--ACAACCGGTTT--CTCA-TGC-CACACAT-A--TGATCTCATG-CACAACATTTTCT-TT-C-GGAT-CAT---G-TAAAGATTATAT--TTG-G-T-CAACAT-TTGGAAAG-AAAATCTGTCGTTAGA-TTGA---AGGAGGGC--TTTAAAA-AGAATATTTA-CAGATTGATCGT--GGCGTC-AATAATGGTAATAAGGTTT-AAGAAAATGAC-TAAT--CAAAAATGCACACA--T---TTCCCTAGGTTGA-CCTGGGGCAAAA--CTTGTGCA--GAAAAT------ATAAGCAGTTC-GTATGAA-ATAA-ATCATTT-GGT-ACG-GA-AGACAAA--TTCCTTGGCC-ACTG-C-ATCACA-TCGGTC--CGATTGACGAAATACC-TAATATA-AAGCTCAA-A-TTTC--CTT--A--T-CA--------T-AGC--AACGTGG-TTGTTG--TTTTC-ACTC-G-A-TCTCA--TG-C-A--C-A-A-CCGGAAG-TCGTTCTC-ACGAAT--TTCTTCTTG-CAT-AACAT--TTG---GTTGTGC-AC-AGAGAAACGAATAAGCGG-CGTcgtg
gi|3 : GTGTTGAT-TACATAGCTTGGTAATAGAAT-AG--TT-AT-TCTCTGT---GCATAAAA---------------------TTCATAGTT-----GTTC----A---A------TTT-A------------AATGAAA-ATGA--T--TGGT-ATTGA---AAAGGGAG-ATTCC--TTGCTAAATAAAC-----AG-TTACATTTCATCCGTTCAATGG--CCCCAT-TTGGC---------G----------TATTTT--TTG-GCCAG-G-----TT-TTTTTTTCTTTA-TCCA---AAAT-TT--A-----TTCTCATG-C--ACA-CCG--TTTTCTCA-TGCACACA----A--TGA-CTCATG-CACAACATTTT-T-TT-C-GGAT-CAT---GGTAAA-AATATAT--TTGGTAT-CA-CAT-T-GGAAAG-AAA-TTTTTTGTTAGAGATGA---AGGAGGGTGTTTTAAAA-AGATTACTTA-CATATTGATTGT--GGTACA-GATAATGGTAA--AGGTTT-AAGAA--T-AC-TA-T--CAAAAATGCACACAATT---TCCCCTAGGTTGAACCTGGGGCAAAA--CTTGTGCAGTGAAAATTA----ATAA-CAGTTCTGTATAAA-ATAA-ATCATTT-GGTTACGTGAGAGACAAA--TTCCTTGGCC-ACTG-CAATCACA-TCG-T---CGATTGATGAATTACC-TAATATA-AGGCTC-A-A-TTTT--CTT--AT-T-CA--------T-AGC--AGCGTGG-TTGTTG---TTTC-ACTC-GAA-TCTCA--TG-C-ACCC-A-ACCCGGAAG--CGTTCTC-ATA--T--TTCT--TTGCCATAAACAT--TT----GTT-TGC-A--AGA-AGACG-ATAAGCGG-
gi|4 : TTAT-TTT--ATTA-GCATAAAA-------ACCAAGTGA-----GTCAAA-TGTTA-AGTTCT-AAA---AC--TGCTTT-ATGAAATCGTCC-AATGAAA-ATGA-GT--TTAC-ATT-----AAGGA-AG-A-TCC--TTGCTAAATAATC-----AG-T--CAGTT--CTCGTTCA-TGG--CC--AT-TTGAC---------G----------TATTTT--C------------------------C----A-TCCA---AAAC-TTCTTC----TTCTCATG-C--ACAACCGGTCTTTCTCAATGCACAAACATGA--TGATCTCATG-GACAACATTTTCT-TT-TTGGAG--AT---GATAAA-ATTATAT--TTA-T-T--A-CAT-TGGTAATG-AAAAACTTT-GTTATAGATGA---TGGGGGGG--GGTAAAACAGAATATTTAACAGATTGATCGT--GATACA-AATAATG---ATAAAGTTT-AGGAA--T-AC-TAAC----AAAGTGCAAACA--TATTTTCCCTAGGTAGAACCTGGG-CAAAAGATTTTTGCAAGGAAAAT------ACTGACAGTCCTGTAT-----------CATTT-GGT-ACG-GA-AGAAACA--TCCCTTGGCCTACTG-T-ATCACA-TCG-TC--CGATTGACGAAATACCCTAATAAT-AAGCTCTATA-TTTT--CTT--A----CA--------TTAGC--AACGTGG-TTGTTG--TTTTC-ACTC-G-A-TCTAA--TG-C-AG-C-A-A-CCGGAAGTTCGTTCTC-ATGATT--TTA---TTG-CAA-AACAT--TTG---GTTGTGC-A--AGAGGAACG-ATAAGCGT-CGTcgtg
gi|5 : tga-AGTTCT-AAA---AC--TGCTTT-GCGAAATCGTCC-AATGAAA-ATGA-G---TTAT-A-CGA---AAAGG-AA-GATCC--TTGCTAAATAACC-----AG-T--CATTC-ATTCGTTCAATGG--CC------------------------------CATTTT--C-C-GC-AG-GGT---TT-TTTTTCC----A-TCCA---AAAC-TTCTC-----TTCTGAAG-C--ACAACCGG-TTTTCTCA-TGCACACA---------------------GACATTTTCT-TT-T-TGGT-CAT---GGTAAA-ATTATAT--TTA-T-T-CA-CATATTGGAAAGAAAAATCTTGT-TTAGA-ATGA---AGGAGGG---TTTAAAA-AGAATATTTA-CAGATTGATCGT--GGTTAC-AATAATGGTA--AAGGTTT-AGGAA--T-AC-TAAg
gi|6 : CA--T---TTCCCTACGGTGAACC-GGGGCAAA---CTTCTGCTAGGAAAAT------ATAAGGAGTCCTGTATGAA-GTAACATCATTT-GGT-ACG-GA-AGACAAA--TCC-TTGGCC-AC-G---ATTA-A-TCG-TC--CGATTGACGAA-TACC-CAATATA---GCTCAA-A-CTTT--CTT--A----CT--------T-AGC--AACGCGG-TTGTTG--TTTTTTACTC-G-A-TCTAA--TG-C-A--C-ACA-CCGGA-G-TCGTTCTC-ATGATT--TTCT--TTGCCAC-AACAT--TTG---GTTGTGCAA--AGAG-AACG-ATAAGCGG-
gi|7 : AATGGTAA---GGTTT-AGGAA--T-A----------------CGCACA--T---TTTCCCAAGTTGAACCTGGGGCAAAA--CTTTTGC-AGGAAAAT------ATGAGCAGTCCTGTATGAA-ATAA-ATCATTT-GGT-ACG-GA-AGACAAA--TCCCTTGGCC-ACTG-C-ATCACA-TCG-TC--CGATTGACAGAATACC-TAATATACAAGCTTAA-A-----------------CG--------T--GC---ACGT-G-TTGTGG--TTTT--------------------------C-G-A-CTGGAAG-TCGTTCTT-ATGATT-------------AC-AACAT--TTG---GTTGTGC-A--AGAG-AACG-ATAAGCGG-cgtg
gi|8 : GTGTTGAT-TA--TGGTT-----GTAGAAT-AG--TTTA--TCT--GTG--GCATAAAA-------AC--AGTGT-----TT--AAATTTTG----TCTAAAA---AC--TGCTTT-ACAAAAT-GTCCGAAT-AAA-ATGA-G---TGAT-A-TAA---AAAGA-AG--ATCCGGTTGCTAGAGAATC-----AATT--CATTT-GT--GTTCAATGG--GC--ATCTTGACAGTGCTATAA----------TATTTTCAC-G-CC-CG-GTGTATTT-TTTTTTC----ATTCCA---AAAC-T--AT-----TTCTCATGCC--ACAAcgtg
gi|9 : AA-GTCATTT-GGT-ACG-GA-AGATAAA--TCCCTTGGCC-ACTC-C-ATCACA-TTG-TC--CGATTGACGAAATACC-TATTATA-AAGCTCAA-A-TTTT--CTT--AACT-AATATAAACTT-AGC--AACGTGG-TTGTTG--TTTTC-ACTC-A-A-TCTAA--TG-C-A--C-A-A-CCGGAAG-TCGTTCTC-A--ATCAGTTCT--TTG-CAC-AACAT--TTT---GTTGTGC-A--AGAG--ACG-ATAAGAGGTCGT
Alignments
lowQualScore : 1 11 1 11 11 11 333 444444444444444444444 11111 111 22222 111 222 11111 11111 55555555555555555555555555555555555555555555 1111 111 22222222 2222222 111 111 111 1 111 111 1 1111 22 1111111 111111 222222 1 33333333333333333
lowQualScore : 0 33 3 0 33 33 0 88 11 333 777777777777777777777 3 99999 6 111 99 6 1 2 6 6 11111 6 9 1 111 6 000 99 66666 6 99 88 1 99 00000 3 99999999999999999999999999999999999999999999 6 5 4444 6 111 6 66666666 6 99 5 0 8 0 5 9999999 5 8 5 111 2 77 000 5 77 999 5 5 666 6 3 88 3 111 444 3 6 3 99 1111 11 6 99 6 6 9999999 111111 1 99 1 55 888888 1 1 6 5 5 5 5 5 66 0 888 5 5 66 0 8 3 0 3 3 44 99999999999999999 3 77 6 44 3 3 3 3 1 44 3 3 77 3 3 3 3 3 44 44 6 3 44 555 3 77 88 3 6
lowQualScore : . .. . . .. .. . .. .. ... ..................... . ..... . ... .. . . . . . ..... . . . ... . ... .. ..... . .. .. . .. ..... . ............................................ . . .... . ... . ........ . .. . . . . . ....... . . . ... . .. ... . .. ... . . ... . . .. . ... ... . . . .. .... .. . .. . . ....... ...... . .. . .. ...... . . . . . . . . .. . ... . . .. . . . . . . .. ................. . .. . .. . . . . . .. . . .. . . . . . .. .. . . .. ... . .. .. . .
lowQualScore : 0 88 2 0 22 88 8 88 00 000 000000000000000000000 8 88888 7 777 22 7 0 5 7 7 55555 7 8 0 777 7 000 22 77777 7 22 33 7 22 00000 7 77777777777777777777777777777777777777777777 7 7 2222 7 777 7 22222222 7 22 6 8 0 8 0 0000000 6 0 7 777 3 44 000 7 99 333 7 7 333 7 2 33 3 777 888 5 7 3 22 0000 00 7 22 7 7 6666666 888888 7 22 0 22 333333 0 0 7 7 0 0 0 0 99 0 222 0 0 99 4 9 3 8 3 1 22 55555555555555555 1 33 2 22 1 1 1 1 5 22 1 1 33 3 3 3 3 3 66 66 7 3 66 444 1 33 88 1 7
consensus : GTGTTGAT-TA--TAGTTTG-TAATAGAAT-AG--TTTAT-TCT--GT---GCATAAAA-------AC-GAGTGT-----TTCAAAATTTTA-AGTTCT-AAA---AC--TGCTTT-GCGAAATCGTCC-AATGAAA-ATGA-GT--TTAT-ATTGA---AAAGA-AG-AATCC--TTGCTAAATAATC-----AG-T--CATTT-ATTCGTTCAATGG--CC--AT-TTGGC---------G----------TATTTT--C-G-GC-AG-G-----TT-TTTTTTC----A-TCCA---AAAC-TTCTN-----TTCTCATG-C--ACAACCGGTTTTTCTCA-TGCACACACAT-A--TGATCTCATG-CACAACATTTTCT-TT-C-GGAT-CAT---GGTAAA-ATTATAT--TTA-T-T-CA-CAT-TCGGAAAG-AAAATCTTTTGTTAGA-ATGA---AGGAGGGT--TTTAAAA-AGAATATTTA-CAGATTGATCGT--GGTNCA-AATAATGGTAATAAGGTTT-AGGAA--T-AC-TAAT--CAAAAATGCACACA--T---TTCCCTAGGTTGAACCTGGGGCAAAA--CTTNTGCAAGGAAAAT------ATAAGCAGTCCTGTATGAA-ATAA-ATCATTT-GGT-ACG-GA-AGACAAA--TCCCTTGGCC-ACTG-C-ATCACA-TCG-TC--CGATTGACGAAATACC-TAATATA-AAGCTCAA-A-TTTT--CTT--A--T-CA--------T-AGC--AACGTGG-TTGTTG--TTTTC-ACTC-G-A-TCTCA--TG-C-A--C-A-A-CCGGAAG-TCGTTCTC-ATGATT--TTCT--TTG-CAC-AACAT--TTG---GTTGTGC-A--AGAGAAACG-ATAAGCGG-CGT
Reference ( family-1845 ) : GTGTTGAT-TA--TAGTTTG-TAATAGAAT-AG--TTTAT-TCT--GT---GCATAAAA-------AC-GAGTGT-----TTCAAAATTTTA-AGTTCT-AAA---AC--TGCTTT-GCGAAATCGTCC-AATGAAA-ATGA-GT--TTAT-ATTGA---AAAGA-AG-AATCC--TTGCTAAATAATC-----AG-T--CATTT-ATTCGTTCAATGG--CC--AT-TTGGC---------G----------TATTTT--C-G-GC-AG-G-----TT-TTTTTTC----A-TCCA---AAAC-TTCTN-----TTCTCATG-C--ACAACCGGTTTTTCTCA-TGCACACACAT-A--TGATCTCATG-CACAACATTTTCT-TT-C-GGAT-CAT---GGTAAA-ATTATAT--TTA-T-T-CA-CAT-TCGGAAAG-AAAATCTTTTGTTAGA-ATGA---AGGAGGGT--TTTAAAA-AGAATATTTA-CAGATTGATCGT--GGTNCA-AATAATGGTAATAAGGTTT-AGGAA--T-AC-TAAT--CAAAAATGCACACA--T---TTCCCTAGGTTGAACCTGGGGCAAAA--CTTNTGCAAGGAAAAT------ATAAGCAGTCCTGTATGAA-ATAA-ATCATTT-GGT-ACG-GA-AGACAAA--TCCCTTGGCC-ACTG-C-ATCACA-TCG-TC--CGATTGACGAAATACC-TAATATA-AAGCTCAA-A-TTTT--CTT--A--T-CA--------T-AGC--AACGTGG-TTGTTG--TTTTC-ACTC-G-A-TCTCA--TG-C-A--C-A-A-CCGGAAG-TCGTTCTC-ATGATT--TTCT--TTG-CAC-AACAT--TTG---GTTGTGC-A--AGAGAAACG-ATAAGCGG-CGT
gi|1 : GTTGATGTA--TAGTTTG-TAATAGAATTAGGTTTTATCTCT--GTCCAGCATTAAATTATAATAC-GAATGTAACTGTTCAAAATT--AGAGTTCT-AAATAAACCCTGCTTTTGCAAAATCGTCC-A-TGATATATCATGTAATTATTACTGATAAAAGGA-AG-A--CC--CTGC-AAATAATTGTCGTAG-T--CATTC-ATTCCTTCGATGGTCCC--AT-TTTTC---------GGTCTTTGCTCTTTTTC--C-GAGCTAGTG-----TTGTTTTTTC----A-TCCAGTAAAACCTTCTCCATTCTTCTTATG-CCCACAACCAGTTTTTCTCA-TGCACA-ACAT-GACTGATCTCATGTCACAACATTTTCT-TTTC-GGATTCATCCGGGTAAA-ATTATATATTTA-G-T-CA-CAT-GCGAAAAG-AAAATCTTTT-TTAGA-ATGATCTAG-AGGGT--TT-AAAA-AGAATATTCATCAGATTGATCGTCTGGTTTACAATAATTGTAAC--GGTTTTAAGAA--T-ACCTAATTTCATAAATGCACATA--T---TTCCCTAGGTTGAACCCGTGGCAAAA--TTTCTGCAAGGAAAATAGTGTGATAAGCAGTTCTGTATGAATATAA-ATCATTTGGGT-ACG-GA-AGACAAATTTCCCTTGGCCAACTGTC-ATCACATTCG-TCCGCGATTTAC-AAATACCTTAATAT--AAGCTCAA-ATTTTT--CTT--A--A-C---------T-TGC--AACGTGG-GTTTTC--TTTTC-AATC-A-T-TCTCA--TGCC-A--C-A-A-CCGGAAG-TCGTTCTC-ACGATT--TTCT--TTG-CAC-AACATGGTTGGAAGTTGTGC-A--AGAG-AACG-ATAAGCGG-
gi|10 : tgtcTCATTT-G-T-ACG-GA-AGATAAA--TCCCTTG-CC-ACTC-C-ATCACA-TTG-TC--CGATTGACGAAATACC-TATTATA-AAGC-AAA-A-TTTT--CTT--AACT-AATATAAACTT-AGCA-AACGTGGTTTGTTG----TTC-ACT--A-A-TCTAA---G-C-A--C-A-A-CC-GAAG-TCG-TCT--ATGATT--TTCT--TTG-CAC-AACAT--TTT---GTTGT-C------AGAGACG-ATAAGAGGTCGTcgtg
gi|11 : AATATA-G-GCTTAA-A-TTTTTTCTT--AA-T-CA--------T-AGC--AACGTGGGTTGTAGGTTTTTA-ACTC-G-GCTCTCA--TG-C-A--CCA-A-CCGTAAG-TCGTTCTCAATGATT--TTCT--TTG-CAT-AACA---TTG---GTTGTGC-A--AGAGAAA-G-ATAAGC-G-CGTg
gi|12 : AATATA-AGGCTTAA-A-TTTT--CTT--A--T-CA--------T-AGC--AACGTGG-TTGTAG--TTTTA-ACTC-G-A-TCTCA--TG-C-A--C-A-A-CCGTAAG-TCGTTCTC-ATGATT--TTCT--TTG-CAT-AACAT--TTG---GTTGTGC-A--AGAGAAG-G-ATAAGCGG-g
gi|13 : -TCTT--TTT--G--TACT--------T-AGCTTAACGTGG---GTTG--TTT-C-ACTCCG-A-TTACAGATG-CGA--C-A-A-TCGGAAT-TCGT-CTT-ATGATT--TCTT--CTG-CAC-AACAC--T-G---GTTGTGC-ATAAGA-AAACG-ATAAGcgtg
gi|14 : ataacggctcgtTATA-AAGCTCAA-T-TTTT--TTTTTA--C-CT--------T-TGC--AACGTGG-TTG-----TTTTC-ACTC-G-A-TCTAA--TG-C-A--C-A-A-TCGGAAG-TCGTTCTC-TTGATT--TTCT--TTG-CAC-AACAC--TTG---GTTGTGC-A--AGA-AAACG-ATAAGCGG-gccg
gi|15 : AACATTTTCTCTT-C-GG-T-TAT---GGTAAA-ATTATAT--TTA-T-TCCA-CAT-T-GGCAAG-AA-------TGAT----ATG----AGGAGGGT--TTAAAAA-AGAATATTTA-CGGATTGATCGT--GATcgtg
gi|16 : aTACC-TAATATA-AGGCTCAA-A-TTTT--CTT--T--T-CA--------T-AGC--AATGTGT-TTGTTG--TTTTC-ACTC-G-A-TCTCA--TG-C-A--a
gi|17 : CATTTTCT-TTTC-GGGT-TAT---GGTAAA-ATTATAT--TTA-T-T-CA-CAT-T
gi|18 : ---GTTGTGT-A--AGAGAA-CG-ATAAGCGG-ggcaa
gi|2 : GTGTTGAT-TA--TAGTTTG-TAATAGAA--AG--TTTAT-TCT--GT---GCATAAAA-------AC-AAGTGT-----TTCAAAATTTTA-AGTTCT-AAA---AC--TGCATT-GCGAAATCGTCC-AATGAAA-ACGA-GT--TTAT-ATTGA---AAAGA-AGTAATCC--TTGCTAAATATTC-----AG-T--CATTT-ATTCGTTCAATGG--CC--AT-TTGGC---------G----------TATTTT--C-G--C-AG-G-----TT-TTTTG-C----A-TCCA---AAAC-TTCTA-----TTCTCATG-C--ACAACCGGTTT--CTCA-TGC-CACACAT-A--TGATCTCATG-CACAACATTTTCT-TT-C-GGAT-CAT---G-TAAAGATTATAT--TTG-G-T-CAACAT-TTGGAAAG-AAAATCTGTCGTTAGA-TTGA---AGGAGGGC--TTTAAAA-AGAATATTTA-CAGATTGATCGT--GGCGTC-AATAATGGTAATAAGGTTT-AAGAAAATGAC-TAAT--CAAAAATGCACACA--T---TTCCCTAGGTTGA-CCTGGGGCAAAA--CTTGTGCA--GAAAAT------ATAAGCAGTTC-GTATGAA-ATAA-ATCATTT-GGT-ACG-GA-AGACAAA--TTCCTTGGCC-ACTG-C-ATCACA-TCGGTC--CGATTGACGAAATACC-TAATATA-AAGCTCAA-A-TTTC--CTT--A--T-CA--------T-AGC--AACGTGG-TTGTTG--TTTTC-ACTC-G-A-TCTCA--TG-C-A--C-A-A-CCGGAAG-TCGTTCTC-ACGAAT--TTCTTCTTG-CAT-AACAT--TTG---GTTGTGC-AC-AGAGAAACGAATAAGCGG-CGTcgtg
gi|3 : GTGTTGAT-TACATAGCTTGGTAATAGAAT-AG--TT-AT-TCTCTGT---GCATAAAA---------------------TTCATAGTT-----GTTC----A---A------TTT-A------------AATGAAA-ATGA--T--TGGT-ATTGA---AAAGGGAG-ATTCC--TTGCTAAATAAAC-----AG-TTACATTTCATCCGTTCAATGG--CCCCAT-TTGGC---------G----------TATTTT--TTG-GCCAG-G-----TT-TTTTTTTCTTTA-TCCA---AAAT-TT--A-----TTCTCATG-C--ACA-CCG--TTTTCTCA-TGCACACA----A--TGA-CTCATG-CACAACATTTT-T-TT-C-GGAT-CAT---GGTAAA-AATATAT--TTGGTAT-CA-CAT-T-GGAAAG-AAA-TTTTTTGTTAGAGATGA---AGGAGGGTGTTTTAAAA-AGATTACTTA-CATATTGATTGT--GGTACA-GATAATGGTAA--AGGTTT-AAGAA--T-AC-TA-T--CAAAAATGCACACAATT---TCCCCTAGGTTGAACCTGGGGCAAAA--CTTGTGCAGTGAAAATTA----ATAA-CAGTTCTGTATAAA-ATAA-ATCATTT-GGTTACGTGAGAGACAAA--TTCCTTGGCC-ACTG-CAATCACA-TCG-T---CGATTGATGAATTACC-TAATATA-AGGCTC-A-A-TTTT--CTT--AT-T-CA--------T-AGC--AGCGTGG-TTGTTG---TTTC-ACTC-GAA-TCTCA--TG-C-ACCC-A-ACCCGGAAG--CGTTCTC-ATA--T--TTCT--TTGCCATAAACAT--TT----GTT-TGC-A--AGA-AGACG-ATAAGCGG-
gi|4 : TTAT-TTT--ATTA-GCATAAAA-------ACCAAGTGA-----GTCAAA-TGTTA-AGTTCT-AAA---AC--TGCTTT-ATGAAATCGTCC-AATGAAA-ATGA-GT--TTAC-ATT-----AAGGA-AG-A-TCC--TTGCTAAATAATC-----AG-T--CAGTT--CTCGTTCA-TGG--CC--AT-TTGAC---------G----------TATTTT--C------------------------C----A-TCCA---AAAC-TTCTTC----TTCTCATG-C--ACAACCGGTCTTTCTCAATGCACAAACATGA--TGATCTCATG-GACAACATTTTCT-TT-TTGGAG--AT---GATAAA-ATTATAT--TTA-T-T--A-CAT-TGGTAATG-AAAAACTTT-GTTATAGATGA---TGGGGGGG--GGTAAAACAGAATATTTAACAGATTGATCGT--GATACA-AATAATG---ATAAAGTTT-AGGAA--T-AC-TAAC----AAAGTGCAAACA--TATTTTCCCTAGGTAGAACCTGGG-CAAAAGATTTTTGCAAGGAAAAT------ACTGACAGTCCTGTAT-----------CATTT-GGT-ACG-GA-AGAAACA--TCCCTTGGCCTACTG-T-ATCACA-TCG-TC--CGATTGACGAAATACCCTAATAAT-AAGCTCTATA-TTTT--CTT--A----CA--------TTAGC--AACGTGG-TTGTTG--TTTTC-ACTC-G-A-TCTAA--TG-C-AG-C-A-A-CCGGAAGTTCGTTCTC-ATGATT--TTA---TTG-CAA-AACAT--TTG---GTTGTGC-A--AGAGGAACG-ATAAGCGT-CGTcgtg
gi|5 : tga-AGTTCT-AAA---AC--TGCTTT-GCGAAATCGTCC-AATGAAA-ATGA-G---TTAT-A-CGA---AAAGG-AA-GATCC--TTGCTAAATAACC-----AG-T--CATTC-ATTCGTTCAATGG--CC------------------------------CATTTT--C-C-GC-AG-GGT---TT-TTTTTCC----A-TCCA---AAAC-TTCTC-----TTCTGAAG-C--ACAACCGG-TTTTCTCA-TGCACACA---------------------GACATTTTCT-TT-T-TGGT-CAT---GGTAAA-ATTATAT--TTA-T-T-CA-CATATTGGAAAGAAAAATCTTGT-TTAGA-ATGA---AGGAGGG---TTTAAAA-AGAATATTTA-CAGATTGATCGT--GGTTAC-AATAATGGTA--AAGGTTT-AGGAA--T-AC-TAAg
gi|6 : CA--T---TTCCCTACGGTGAACC-GGGGCAAA---CTTCTGCTAGGAAAAT------ATAAGGAGTCCTGTATGAA-GTAACATCATTT-GGT-ACG-GA-AGACAAA--TCC-TTGGCC-AC-G---ATTA-A-TCG-TC--CGATTGACGAA-TACC-CAATATA---GCTCAA-A-CTTT--CTT--A----CT--------T-AGC--AACGCGG-TTGTTG--TTTTTTACTC-G-A-TCTAA--TG-C-A--C-ACA-CCGGA-G-TCGTTCTC-ATGATT--TTCT--TTGCCAC-AACAT--TTG---GTTGTGCAA--AGAG-AACG-ATAAGCGG-
gi|7 : AATGGTAA---GGTTT-AGGAA--T-A----------------CGCACA--T---TTTCCCAAGTTGAACCTGGGGCAAAA--CTTTTGC-AGGAAAAT------ATGAGCAGTCCTGTATGAA-ATAA-ATCATTT-GGT-ACG-GA-AGACAAA--TCCCTTGGCC-ACTG-C-ATCACA-TCG-TC--CGATTGACAGAATACC-TAATATACAAGCTTAA-A-----------------CG--------T--GC---ACGT-G-TTGTGG--TTTT--------------------------C-G-A-CTGGAAG-TCGTTCTT-ATGATT-------------AC-AACAT--TTG---GTTGTGC-A--AGAG-AACG-ATAAGCGG-cgtg
gi|8 : GTGTTGAT-TA--TGGTT-----GTAGAAT-AG--TTTA--TCT--GTG--GCATAAAA-------AC--AGTGT-----TT--AAATTTTG----TCTAAAA---AC--TGCTTT-ACAAAAT-GTCCGAAT-AAA-ATGA-G---TGAT-A-TAA---AAAGA-AG--ATCCGGTTGCTAGAGAATC-----AATT--CATTT-GT--GTTCAATGG--GC--ATCTTGACAGTGCTATAA----------TATTTTCAC-G-CC-CG-GTGTATTT-TTTTTTC----ATTCCA---AAAC-T--AT-----TTCTCATGCC--ACAAcgtg
gi|9 : AA-GTCATTT-GGT-ACG-GA-AGATAAA--TCCCTTGGCC-ACTC-C-ATCACA-TTG-TC--CGATTGACGAAATACC-TATTATA-AAGCTCAA-A-TTTT--CTT--AACT-AATATAAACTT-AGC--AACGTGG-TTGTTG--TTTTC-ACTC-A-A-TCTAA--TG-C-A--C-A-A-CCGGAAG-TCGTTCTC-A--ATCAGTTCT--TTG-CAC-AACAT--TTT---GTTGTGC-A--AGAG--ACG-ATAAGAGGTCGT
blockSeqs : . CA T G T . T CT TA ACCAAGTGA A TTAA A . . . C C G . GT . T G . G TAA GG . T TA CA T . CCAT G AGTGCTATAATATTTTCACGCCCGGTGTAT . T CTTT T . . CTTC C . T A C CATGA T . C TC G T . G . GTA C A ATT A A TG G . TGT A C A . GTC TA . AA G . ATCAA TATT T GA G AG TA G G . C . T T G . T CA . G . C C T . TT AACTAATATAAACT T TT T GT T C A C A GA . G CC C C C T A AG TC C A . . A TA GA A T
blockSeqs : . . T . T . T . G ACAAGTGT G TTAA . . . . T C . . GT . T G . . AT . . . . A C . ATC G GTATTTTTTGGCCAGG . C . . . . CTA . . T . C CATA T . . TT A T . . . T . . TT . A CG G . T T . . . ACA TA . . . . TCAA ATT T . G AA . A A . . . . . . . . C . . . . . . . . AACTAATATAAACT . A G . . . . . C . . . G . . . . . . . C . . . . C GA . T
blockSeqs : . . . . . . T . . ACAGTGT A TTG . . . . C C . . T . T G . . GA . . . . A T . AT A CATTTTCCGCAGGGT . T . . . . CTC . . . . A A . . . C A C . . . T . . TG . A TG . . C T . . . ACA A . . . . ACA T T . T TA . G G . . . . . . . . C . . . . . . . . TTACCT . . . . . . . . C . . . . . . . . . . . . . . . . . GA . .
blockSeqs : . . . . . . . . . . C . . . G . . A . . A . . . . G T . AT A GTATTTTCGCAGG . . . . . . AT . . . . C . . . . C A C . . . G . . T . . G . . G T . . . TAC . . . . . . T T . C A . G G . . . . . . . . T . . . . . . . . AATCA . . . . . . . . C . . . . . . . . . . . . . . . . . GA . .
blockSeqs : . . . . . . . . G . . . . . A . . . . . . . . . GTATTTTC . . . . . . A . . . C G C . . . T . . T . . T . . . T . . . . . . . . T . . T A . . . . . . . . . . . C . . . . . . . . GTACT . . . . . . . . A . . . . . . . . . . . . . . . . . GA . .
blockSeqs : . T . . . . . T . . . . . . . . . C . . . . . . . . ATTCA . . . . . . . . C . . . . . . . . . . . . . . . . . GG . .
blockSeqs : . . . . . . . . . . . . . . . ATCA . . . . . . . . C . . . . . . . . . . . . . . . . . A . .
blockSeqs : . . . . . TTCA . . . . . . . . C . . . . . . . . . . . . . . . . . A . .
blockSeqs : . . . . ATCA . . . . . . . . A . . . . . . . . . . . . . . . . . A . .
blockSeqs : . . . . ACA . . . . . . . . A . . . . . . . . . . . . . . . . . G . .
blockSeqs : . . . . ACT . . . . . . . . A . . . . . . . . . . . . . . . . . G . .
blockSeqs : . . CG . . . . . . . . . . . . . . . . G .
blockSeqCons : T* *** ACAGTG*************** TTG** *** ** G**** *** ***** ** GTATTTTCCGCGGG****************************** *** CTA***** ** A****** C** C* *** ** CG *** ** ACN* A* CA***** ****** ** C** ** ATCA************* ** *** GA
originalCons : GTGTTGAT-TA--TAGTTTG-TAATAGAAT-AG--TTTAT-TCT--GT---GCATAAAA-------AC-GAGTGT-----TTCAAAATTTTA-AGTTCT-AAA---AC--TGCTTT-GCGAAATCGTCC-AATGAAA-ATGA-GT--TTAT-ATTGA---AAAGA-AG-AATCC--TTGCTAAATAATC-----AG-T--CATTT-ATTCGTTCAATGG--CC--AT-TTGGC---------G----------TATTTT--C-G-GC-AG-G-----TT-TTTTTTC----A-TCCA---AAAC-TTCTN-----TTCTCATG-C--ACAACCGGTTTTTCTCA-TGCACACACAT-A--TGATCTCATG-CACAACATTTTCT-TT-C-GGAT-CAT---GGTAAA-ATTATAT--TTA-T-T-CA-CAT-TCGGAAAG-AAAATCTTTTGTTAGA-ATGA---AGGAGGGT--TTTAAAA-AGAATATTTA-CAGATTGATCGT--GGTNCA-AATAATGGTAATAAGGTTT-AGGAA--T-AC-TAAT--CAAAAATGCACACA--T---TTCCCTAGGTTGAACCTGGGGCAAAA--CTTNTGCAAGGAAAAT------ATAAGCAGTCCTGTATGAA-ATAA-ATCATTT-GGT-ACG-GA-AGACAAA--TCCCTTGGCC-ACTG-C-ATCACA-TCG-TC--CGATTGACGAAATACC-TAATATA-AAGCTCAA-A-TTTT--CTT--A--T-CA--------T-AGC--AACGTGG-TTGTTG--TTTTC-ACTC-G-A-TCTCA--TG-C-A--C-A-A-CCGGAAG-TCGTTCTC-ATGATT--TTCT--TTG-CAC-AACAT--TTG---GTTGTGC-A--AGAGAAACG-ATAAGCGG-CGT
finalCons : GTGTTGAT-TA--TAGTTTG-TAATAGAAT-AG--TTTAT-TCT--GT---GCATAAAAACAGTG---------------TTCAAAATTTTG--GTTCT-AAA---AC--TGCTTT-GCGAAATCGTCC-AATGAAA-ATGAG----TTAT-ATTGA---AAAGA-AG-AATCC--TTGCTAAATAATC-----AG-T--CATTT-ATTCGTTCAATGG--CC--AT-TTGGCGTATTTTCCGCGGG------------------------------TT-TTTTTTC----A-TCCA---AAAC-TTCTA-----TTCTCATG-C--ACAACCGGTTTTTCTCA-TGCACACAA------TGATCTCATG-CACAACATTTTCT-TTC--GGATC-AT---GGTAAA-ATTATAT--TTA-T-T-CA-CAT-TCGGAAAG-AAAATCTTTCGTTAGA-ATGA---AGGAGGGT--TTTAAAA-AGAATATTTA-CAGATTGATCGT--GGTACN-AATAATGGTAAA-AGGTTT-AGGAA--T-AC-TACA-----AAATGCACACA--T---TTCCCTAGGTTGAACCTGGGGCAAAA--CTTNTGCAAGGAAAAT------ATAAGCAGTCCTGTATGAA-ATAA-ATCATTT-GGT-ACG-GA-AGACAAA--TCCCTTGGCC-ACTGC--ATCACA-TCG-TC--CGATTGACGAAATACC-TAATATA-AAGCTCAA-A-TTTT--CTTATCA-------------T-AGC--AACGTGG-TTGTTG--TTTTC-ACTC-G-A-TCTCA--TG-C-A--C-A-A-CCGGAAG-TCGTTCTC-ATGATT--TTCT--TTG-CAC-AACAT--TTG---GTTGTGC-A--AGAGAAACG-ATAAGCGG-CGT
Alignments
lowQualScore : 1 11 1 11 11 11 333 666666666666666666 2222 111 1111 1 111 222 11111 11111 444444444444444444444 55555555555555555 2222222 111 2222 111 11 3333 111 111 111 2222 1 1111 111 1 1 222 444444444444 111111 222222 1 33333333333333333
lowQualScore : 0 33 3 0 33 33 0 88 11 333 222222222222222222 8 8 0 3333 6 111 99 6 1 2 6 4444 6 3 6 9 1 111 6 000 99 66666 6 99 88 1 99 00000 3 111111111111111111111 33333333333333333 6 0000000 6 111 77 1111 111 6 99 5 0 8 8 99 8888 5 8 5 111 2 77 000 5 77 999 5 5 666 6 6 1 4444 3 5555 444 3 6 3 99 9999 6 333 99 6 333333333333 8 111111 1 99 1 9 888888 1 1 6 5 5 5 5 5 66 0 0 888 5 5 66 8 44 3 3 44 99999999999999999 3 77 6 77 3 3 3 1 44 3 3 77 3 3 3 3 3 44 44 6 3 44 555 3 77 88 3 6
lowQualScore : . .. . . .. .. . .. .. ... .................. . . . .... . ... .. . . . . .... . . . . . ... . ... .. ..... . .. .. . .. ..... . ..................... ................. . ....... . ... .. .... ... . .. . . . . .. .... . . . ... . .. ... . .. ... . . ... . . . .... . .... ... . . . .. .... . ... .. . ............ . ...... . .. . . ...... . . . . . . . . .. . . ... . . .. . .. . . .. ................. . .. . .. . . . . .. . . .. . . . . . .. .. . . .. ... . .. .. . .
lowQualScore : 0 88 2 0 22 88 8 88 00 000 666666666666666666 0 0 8 1111 7 777 22 7 0 5 7 2222 7 3 7 8 0 777 7 000 22 77777 7 22 33 7 22 00000 7 333333333333333333333 88888888888888888 7 8888888 7 777 77 5555 777 7 22 6 8 0 0 00 8888 6 0 7 777 3 44 000 7 99 333 7 7 333 7 7 0 3333 3 2222 888 5 7 3 22 3333 6 777 22 7 888888888888 0 888888 7 22 0 8 333333 0 0 7 7 0 0 0 0 99 2 0 222 0 0 99 9 77 3 1 22 55555555555555555 1 33 2 33 1 1 1 5 22 1 1 33 3 3 3 3 3 66 66 7 3 66 444 1 33 88 1 7
consensus : GTGTTGAT-TA--TAGTTTG-TAATAGAAT-AG--TTTAT-TCT--GT---GCATAAAA-------AC-A-----A-GTG-TT-CAAAATTTNA-GTTCT-AAA---AC--TGCTTT-GCGAAATCGTCC-AATGAAA----ATG-AGTT-AT-ATTGA---AAAGA-AG-AATCC--TTGCTAAATAATC-----AG-T--CATTT-ATTCGTTCAATGG--CC--AT-TTGGC---------G-----TA----TTTTC-CG--C-G---G-G---TT-TTTTTT-C----A-TCCA---AAAC-TTCT--A-TTCTC---ATG-C--ACAACCGGTTTTTCTCA-TGC-ACAA-CATGA-TGATCTCATG-CACAACATTTTCT-TT-C-GGAT-CAT---GGTAAA-ATTATAT--TTA-T-TC-A-CAT-TCGGAAAG-AA-AATCTTTTG-TTAGA-ATGA---AGGAGGGT--TTTAAAA-AGAATATTTA-CAGATTGATCGT--GG-T--ACAAATAATGGTAA-AAGGTTTAGGAA--T-AC-TAA---C--A-AAA-TGCACACA--T---TTCCCTAGGTTGAACCTGGGGCAAAA--CTTNTGCAAGGAAAAT------ATAAGCAGTCCTGTATGAA-ATAA-ATCATTT-GGT-ACG-GA-AGACAAA--TCCCTTGGCC-ACTG-C-ATCACA-TCG-TC--CGATTGACGAAATACC-TAATATA-AAGCTCAA-A-TTTT--CTT--A--T-CA--------T-AGC--AACGTGG-TTGTTG--TTTTCACTC-G-A-TCTCA--TG-C-A--C-A-A-CCGGAAG-TCGTTCTC-ATGATT--TTCT--TTG-CAC-AACAT--TTG---GTTGTGC-A--AGAGAAACG-ATAAGCGG-CGT
Reference ( family-1845 ) : GTGTTGAT-TA--TAGTTTG-TAATAGAAT-AG--TTTAT-TCT--GT---GCATAAAA-------AC-------A-GTG-TT-CAAAATTTTG-GTTCT-AAA---AC--TGCTTT-GCGAAATCGTCC-AATGAAA----ATG-AGTT-AT-ATTGA---AAAGA-AG-AATCC--TTGCTAAATAATC-----AG-T--CATTT-ATTCGTTCAATGG--CC--AT-TTGGC---------G-----TA----TTTTC-CG--C-G---G-G---TT-TTTTTT-C----A-TCCA---AAAC-TTCT--A-TTCTC---ATG-C--ACAACCGGTTTTTCTCA-TGC-ACA--CA--A-TGATCTCATG-CACAACATTTTCT-TT-C-GGAT-CAT---GGTAAA-ATTATAT--TTA-T-TC-A-CAT-TCGGAAAG-AA-AATCTTTCG-TTAGA-ATGA---AGGAGGGT--TTTAAAA-AGAATATTTA-CAGATTGATCGT--GG-T--ACNAATAATGGTAA-AAGGTTTAGGAA--T-AC-TA----C--A-AAA-TGCACACA--T---TTCCCTAGGTTGAACCTGGGGCAAAA--CTTNTGCAAGGAAAAT------ATAAGCAGTCCTGTATGAA-ATAA-ATCATTT-GGT-ACG-GA-AGACAAA--TCCCTTGGCC-ACTG-C-ATCACA-TCG-TC--CGATTGACGAAATACC-TAATATA-AAGCTCAA-A-TTTT--CTT--A--T-CA--------T-AGC--AACGTGG-TTGTTG--TTTTCACTC-G-A-TCTCA--TG-C-A--C-A-A-CCGGAAG-TCGTTCTC-ATGATT--TTCT--TTG-CAC-AACAT--TTG---GTTGTGC-A--AGAGAAACG-ATAAGCGG-CGT
gi|1 : GTTGATGTA--TAGTTTG-TAATAGAATTAGGTTTTATCTCT--GTCCAGCATTAAATTATAATACGAATGTAA-CTG-TT-CAAAATTAGA-GTTCT-AAATAAACCCTGCTTTTGCAAAATCGTCC-A-TGATATATCATGTAATT-ATTACTGATAAAAGGA-AG-A--CC--CTGC-AAATAATTGTCGTAG-T--CATTC-ATTCCTTCGATGGTCCC--AT-TTTTC---------GGTCTTTGCTCTTTTTC-CG--A-GCTAGTG---TTGTTTTTT-C----A-TCCAGTAAAACCTTCTCCA-TTCTTCTTATG-CCCACAACCAGTTTTTCTCA-TGC-ACAA-CATGACTGATCTCATGTCACAACATTTTCT-TTTC-GGATTCATCCGGGTAAA-ATTATATATTTA-G-TC-A-CAT-GCGAAAAG-AA-AATCTTTT--TTAGA-ATGATCTAG-AGGGT--TT-AAAA-AGAATATTCATCAGATTGATCGTCTGG-TTTAC-AATAATTGTAA-CGGTTTTAAGAA--T-ACCTAATTTC--ATAAA-TGCACATA--T---TTCCCTAGGTTGAACCCGTGGCAAAA--TTTCTGCAAGGAAAATAGTGTGATAAGCAGTTCTGTATGAATATAA-ATCATTTGGGT-ACG-GA-AGACAAATTTCCCTTGGCCAACTGTC-ATCACATTCG-TCCGCGATTTAC-AAATACCTTAATAT--AAGCTCAA-ATTTTT--CTT--A--A-C---------T-TGC--AACGTGG-GTTTTC--TTTTCAATC-A-T-TCTCA--TGCC-A--C-A-A-CCGGAAG-TCGTTCTC-ACGATT--TTCT--TTG-CAC-AACATGGTTGGAAGTTGTGC-A--AGAG-AACG-ATAAGCGG-
gi|10 : tgtcTCATTT-G-T-ACG-GA-AGATAAA--TCCCTTG-CC-ACTC-C-ATCACA-TTG-TC--CGATTGACGAAATACC-TATTATA-AAGC-AAA-A-TTTT--CTT--AACT-AATATAAACTT-AGCA-AACGTGGTTTGTTG----TTCACT--A-A-TCTAA---G-C-A--C-A-A-CC-GAAG-TCG-TCT--ATGATT--TTCT--TTG-CAC-AACAT--TTT---GTTGT-C------AGAGACG-ATAAGAGGTCGTcgtg
gi|11 : AATATA-G-GCTTAA-A-TTTTTTCTT--AA-T-CA--------T-AGC--AACGTGGGTTGTAGGTTTTTAACTC-G-GCTCTCA--TG-C-A--CCA-A-CCGTAAG-TCGTTCTCAATGATT--TTCT--TTG-CAT-AACA---TTG---GTTGTGC-A--AGAGAAA-G-ATAAGC-G-CGTg
gi|12 : AATATA-AGGCTTAA-A-TTTT--CTT--A--T-CA--------T-AGC--AACGTGG-TTGTAG--TTTTAACTC-G-A-TCTCA--TG-C-A--C-A-A-CCGTAAG-TCGTTCTC-ATGATT--TTCT--TTG-CAT-AACAT--TTG---GTTGTGC-A--AGAGAAG-G-ATAAGCGG-g
gi|13 : -TCTT--TTT--G--TACT--------T-AGCTTAACGTGG---GTTG--TTT-CACTCCG-A-TTACAGATG-CGA--C-A-A-TCGGAAT-TCGT-CTT-ATGATT--TCTT--CTG-CAC-AACAC--T-G---GTTGTGC-ATAAGA-AAACG-ATAAGcgtg
gi|14 : ataacggctcgtTATA-AAGCTCAA-T-TTTT--TTTTTA--C-CT--------T-TGC--AACGTGG-TTG-----TTTTCACTC-G-A-TCTAA--TG-C-A--C-A-A-TCGGAAG-TCGTTCTC-TTGATT--TTCT--TTG-CAC-AACAC--TTG---GTTGTGC-A--AGA-AAACG-ATAAGCGG-gccg
gi|15 : AACATTTTCTCTT-C-GG-T-TAT---GGTAAA-ATTATAT--TTA-T-TCCA-CAT-T-GGCAAG-AATGAT-------------ATGA----GGAGGGT--TTAAAAA-AGAATATTTA-CGGATTGATCGT--GA-T--Acgtg
gi|16 : aTACC-TAATATA-AGGCTCAA-A-TTTT--CTT--T--T-CA--------T-AGC--AATGTGT-TTGTTG--TTTTCACTC-G-A-TCTCA--TG-C-A--
gi|17 : CATTTTCT-TTTC-GGGT-TAT---GGTAAA-ATTATAT--TTA-T-TC-A-CAT-T
gi|18 : ---GTTGTGT-A--AGAGAA-CG-ATAAGCGG-ggcaa
gi|2 : GTGTTGAT-TA--TAGTTTG-TAATAGAA--AG--TTTAT-TCT--GT---GCATAAAA-------AC-------AAGTG-TTTCAAAATTTTAAGTTCT-AAA---AC--TGCATT-GCGAAATCGTCC-AATGAAA----ACG-AGTTTAT-ATTGA---AAAGA-AGTAATCC--TTGCTAAATATTC-----AG-T--CATTT-ATTCGTTCAATGG--CC--AT-TTGGC---------G-----TA----TTTTC--G--C-A---G-G---TT-TTTTG--C----A-TCCA---AAAC-TTCT--A-TTCTC---ATG-C--ACAACCGGTTT--CTCA-TGCCACA--CAT-A-TGATCTCATG-CACAACATTTTCT-TT-C-GGAT-CAT---G-TAAAGATTATAT--TTG-G-TC-AACAT-TTGGAAAG-AA-AATCTGTCG-TTAGA-TTGA---AGGAGGGC--TTTAAAA-AGAATATTTA-CAGATTGATCGT--GG-C--GTCAATAATGGTAATAAGGTTTAAGAAAATGAC-TAAT--C--A-AAAATGCACACA--T---TTCCCTAGGTTGA-CCTGGGGCAAAA--CTTGTGCA--GAAAAT------ATAAGCAGTTC-GTATGAA-ATAA-ATCATTT-GGT-ACG-GA-AGACAAA--TTCCTTGGCC-ACTG-C-ATCACA-TCGGTC--CGATTGACGAAATACC-TAATATA-AAGCTCAA-A-TTTC--CTT--A--T-CA--------T-AGC--AACGTGG-TTGTTG--TTTTCACTC-G-A-TCTCA--TG-C-A--C-A-A-CCGGAAG-TCGTTCTC-ACGAAT--TTCTTCTTG-CAT-AACAT--TTG---GTTGTGC-AC-AGAGAAACGAATAAGCGG-CGTcgtg
gi|3 : GTGTTGAT-TACATAGCTTGGTAATAGAAT-AG--TT-AT-TCTCTGT---GCATAAAA----------------------TT-CATAGTT----GTTC----A---A------TTT-A------------AATGAAA----ATG-ATTG-GT-ATTGA---AAAGGGAG-ATTCC--TTGCTAAATAAAC-----AG-TTACATTTCATCCGTTCAATGG--CCCCAT-TTGGC---------G-----TA----TTTTT-TGGCC-A---G-G---TT-TTTTTT-TCTTTA-TCCA---AAAT-TT----A-TTCTC---ATG-C--ACA-CCG--TTTTCTCA-TGC-ACA--CA--A-TGA-CTCATG-CACAACATTTT-T-TT-C-GGAT-CAT---GGTAAA-AATATAT--TTGGTATC-A-CAT-T-GGAAAG-AA-A-TTTTTTG-TTAGAGATGA---AGGAGGGTGTTTTAAAA-AGATTACTTA-CATATTGATTGT--GG-T--ACAGATAATGGTAA-A-GGTTTAAGAA--T-AC-TA----TCAA-AAA-TGCACACAATT---TCCCCTAGGTTGAACCTGGGGCAAAA--CTTGTGCAGTGAAAATTA----ATAA-CAGTTCTGTATAAA-ATAA-ATCATTT-GGTTACGTGAGAGACAAA--TTCCTTGGCC-ACTG-CAATCACA-TCG-T---CGATTGATGAATTACC-TAATATA-AGGCTC-A-A-TTTT--CTT--AT-T-CA--------T-AGC--AGCGTGG-TTGTTG---TTTCACTC-GAA-TCTCA--TG-C-ACCC-A-ACCCGGAAG--CGTTCTC-ATA--T--TTCT--TTGCCATAAACAT--TT----GTT-TGC-A--AGA-AGACG-ATAAGCGG-
gi|4 : TTAT-TTT--ATTA-GCATAAAA-------ACCA-----A-GTGAGT-CAAATGTTAA-GTTCT-AAA---AC--TGCTTT-ATGAAATCGTCC-AATGAAA----ATG-AGTTTAC-ATT-----AAGGA-AG-A-TCC--TTGCTAAATAATC-----AG-T--CAGTT--CTCGTTCA-TGG--CC--AT-TTGAC---------G-----TA----TTTTC-C------------------------------A-TCCA---AAAC-TTCTT-C-TTCTC---ATG-C--ACAACCGGTCTTTCTCAATGC-ACAAACATGA-TGATCTCATG-GACAACATTTTCT-TT-TTGGAG--AT---GATAAA-ATTATAT--TTA-T-T--A-CAT-TGGTAATG-AA-AAACTTT-G-TTATAGATGA---TGGGGGGG--GGTAAAACAGAATATTTAACAGATTGATCGT--GA-T--ACAAATAATGATAA-A--GTTTAGGAA--T-AC-TAA---C--A-AAG-TGCAAACA--TATTTTCCCTAGGTAGAACCTGGG-CAAAAGATTTTTGCAAGGAAAAT------ACTGACAGTCCTGTAT-----------CATTT-GGT-ACG-GA-AGAAACA--TCCCTTGGCCTACTG-T-ATCACA-TCG-TC--CGATTGACGAAATACCCTAATAAT-AAGCTCTATA-TTTT--CTT--A----CA--------TTAGC--AACGTGG-TTGTTG--TTTTCACTC-G-A-TCTAA--TG-C-AG-C-A-A-CCGGAAGTTCGTTCTC-ATGATT--TTA---TTG-CAA-AACAT--TTG---GTTGTGC-A--AGAGGAACG-ATAAGCGT-CGTcgtg
gi|5 : tga-GTTCT-AAA---AC--TGCTTT-GCGAAATCGTCC-AATGAAA----ATG-AGTT-AT-A-CGA---AAAGG-AA-GATCC--TTGCTAAATAACC-----AG-T--CATTC-ATTCGTTCAATGG--CC-------------------------CA----TTTTC-CG--CAG---G-G---TT-TTTTTTCC----A-TCCA---AAAC-TTCT--C-TTCTG---AAG-C--ACAACCGG-TTTTCTCA-TGC-ACA--CA------------------GACATTTTCT-TT-T-TGGT-CAT---GGTAAA-ATTATAT--TTA-T-TC-A-CATATTGGAAAGAAA-AATCTT--GTTTAGA-ATGA---AGGAGGG---TTTAAAA-AGAATATTTA-CAGATTGATCGT--GGTT--AC-AATAATGGT-A-AAGGTTTAGGAA--T-AC-TA----g
gi|6 : aCA--T---TTCCCTACGGTGAACC-GGGGCAAA---CTTCTGCTAGGAAAAT------ATAAGGAGTCCTGTATGAA-GTAACATCATTT-GGT-ACG-GA-AGACAAA--T-CCTTGGCC-AC-G---ATTA-A-TCG-TC--CGATTGACG-AATACC-CAATAT---AGCTCAA-A-CTTT--CTT--A----CT--------T-AGC--AACGCGG-TTGTTGT-TTTTTACTC-G-A-TCTAA--TG-C-A--C-ACA-CCGG-AG-TCGTTCTC-ATGATT--TTCT--TTGCCAC-AACAT--TTG---GTTGTGCAA--AGAG-AACG-ATAAGCGG-a
gi|7 : AATGGTAA---GGTTTAGGAA--T-AC-------------------GCACA--T---TTTCCCAAGTTGAACCTGGGGCAAAA--CTTTTGCA-GGAAAAT------ATGAGCAGTCCTGTATGAA-ATAA-ATCATTT-GGT-ACG-GA-AGACAAA--TCCCTTGGCC-ACTG-C-ATCACA-TCG-TC--CGATTGACAGAATACC-TAATATACAAGCTTAA-A-----------------CG--------T--GC---ACGT-G-TTGTGG--TTTT-------------------------C-G-A-CTGGAAG-TCGTTCTT-ATGATT-------------AC-AACAT--TTG---GTTGTGC-A--AGAG-AACG-ATAAGCGG-cgtg
gi|8 : GTGTTGAT-TA--TGGTT-----GTAGAAT-AG--TTTA--TCT--GTG--GCATAAAA-------AC-------A-GTG-TT-T-AAATTTTG---TCTAAAA---AC--TGCTTT-ACAAAAT-GTCCGAAT-AAA----ATG-AGTG-AT-A-TAA---AAAGA-AG--ATCCGGTTGCTAGAGAATC-----AATT--CATTT-GT--GTTCAATGG--GC--ATCTTGACAGTGCTATAA-----TA----TTTTCACGCCC-G---GTGTATTT-TTTTTT-C----ATTCCA---AAA----CT--ATTTCTC---ATGCC--ACAAcgtg
gi|9 : AA-GTCATTT-GGT-ACG-GA-AGATAAA--TCCCTTGGCC-ACTC-C-ATCACA-TTG-TC--CGATTGACGAAATACC-TATTATA-AAGCTCAA-A-TTTT--CTT--AACT-AATATAAACTT-AGC--AACGTGG-TTGTTG--TTTTCACTC-A-A-TCTAA--TG-C-A--C-A-A-CCGGAAG-TCGTTCTC-A--ATCAGTTCT--TTG-CAC-AACAT--TTT---GTTGTGC-A--AGAG--ACG-ATAAGAGGTCGT