lowQualScore                  :                                                                                                                                                                             222222222222222222222222222222222222                                                                                                           11111111111111111111111111111111111111111111111111111111111111111111111111111111111111                                                                                                                                                                                                                                                                                                                                                                                                                              111111111111111111111111111111111111111111111111111111111111111111111111111111111111111                                                                                                                           11111111111111111111111111111111111111111111111111111111111111111                                                                                            1111111111111111111111111111                                                                                                                                         
lowQualScore                  :                                                                                                                                               22        33333333        1   111111111111111111111111111111111111        2222               22222222   1        2    1            1                                    11   00000000000000000000000000000000000000000000000000000000000000000000000000000000000000  11         222222222222          1111     11              11     11         1       1    1   11         4            33333333             9999999999999999999999999999999999999999999999999             33333333333           222222222           111         7777777777777777777777777777777777777777777777777777777777777777777777777777777         11     1       111      333333   11        333333         22222222    333333333333333333333333333333333333333333333333333333333333333333333333333333333333333        11     111           111111           111                  111          111   1          222222222                 44444444444444444444444444444444444444444444444444444444444444444             1111    2222222222222222    33333            222222222222                  1   2222222222222222222222222222         2222       555555     22                       1     1111          22   2222                                                    
lowQualScore                  :                                                                                                                                               22        44444444 0      0   333333333333333333333333333333333333   6 0  8888 1   7     9   99999999   0        1    0     6      5                                    88   00000000000000000000000000000000000000000000000000000000000000000000000000000000000000  22  33     444444444444  8    0  4444     22        8   8 11     99  8      5       0    3   22         0            00000000        8    9999999999999999999999999999999999999999999999999 8   88      22222222222  6        444444444  1     5  000 5 77    5555555555555555555555555555555555555555555555555555555555555555555555555555555   88    11     6 8  8  444      555555   22        000000  1   3  44444444    222222222222222222222222222222222222222222222222222222222222222222222222222222222222222 2    8 11  8  999      99 6 999999  6        111     1   1     5  000 5 77     222   1 1  7  6  666666666  6  99     6    88888888888888888888888888888888888888888888888888888888888888888   6         9999    3333333333333333    33333      99    999999999999      0    0      0   0000000000000000000000000000       9 1111   99  000000     33      0  2      2      5 0   4444    1   6 22   1111              2                                4    
lowQualScore                  :                                                                                                                                               ..        ........ .      .   ....................................   . .  .... .   .     .   ........   .        .    .     .      .                                    ..   ......................................................................................  ..  ..     ............  .    .  ....     ..        .   . ..     ..  .      .       .    .   ..         .            ........        .    ................................................. .   ..      ...........  .        .........  .     .  ... . ..    ...............................................................................   ..    ..     . .  .  ...      ......   ..        ......  .   .  ........    ....................................................................................... .    . ..  .  ...      .. . ......  .        ...     .   .     .  ... . ..     ...   . .  .  .  .........  .  ..     .    .................................................................   .         ....    ................    .....      ..    ............      .    .      .   ............................       . ....   ..  ......     ..      .  .      .      . .   ....    .   . ..   ....              .                                .    
lowQualScore                  :                                                                                                                                               22        55555555 2      0   777777777777777777777777777777777777   7 7  3333 0   3     7   88888888   0        2    5     0      0                                    00   44444444444444444444444444444444444444444444444444444444444444444444444444444444444444  00  55     888888888888  0    8  8888     88        0   0 00     00  0      0       6    2   00         0            55555555        0    7777777777777777777777777777777777777777777777777 0   88      00000000000  7        777777777  0     7  000 7 99    3333333333333333333333333333333333333333333333333333333333333333333333333333333   88    00     0 0  0  000      000000   77        000000  5   5  77777777    333333333333333333333333333333333333333333333333333333333333333333333333333333333333333 8    0 00  0  444      22 7 222222  7        777     5   0     7  000 7 99     111   9 4  5  3  777777777  7  22     7    99999999999999999999999999999999999999999999999999999999999999999   7         5555    0000000000000000    33333      22    333333333333      8    2      0   2222222222222222222222222222       5 2222   33  777777     88      2  0      5      0 2   8888    0   0 33   2222              8                                0    
consensus                     :                                                                                                                                        TCAGCCCAGGGGGTGTTA-CA-GGGTCATTAAG-TGC----------A-----------AAAAA---T-----TGAACGAA----GGGTATCGTGTGACA------T-ATC-AAACTGAAAGTCTNGACGAGTAGAGTTCANNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTTCAGTTCCAAGGGGGGG--TGT--CGGGG--TCGTTAAGTG---A--AA----C---------GAAAA---ATT-------GACCGAA--GG--GTA-TCGTGTGACA--T-A------TC-AAATTGAA---GGTCTTGACGAGTAG-AGT-T--CAGCCC-GG-GGTGTTACAGGGTCATTAAGCGAGTAGAGTTCAG-CCCGGGGGTGTTA-CA-GGGTCATTAAG-TGCA---------AANTG------AA---AAA---AGTGACCGAAGGG--T--A-TCG-TGTGACA--T-A------TC-AAATTGAAAGTCTCG--ACGAGTAG-AG---T-T--CAGCCCGGGGG-GT---G-----G----GG-------------T--CA--TTAAG-TGCAAAA--TTT---------AC----AAAT-GACC--GAAGG-G-TA-TC-GTGTGACA------TAT-CAAATTGAA---GGTCTTGACGAGTAG---AGTTCAGCC-----CNGG----GG-----------------T--G-TTAC---G-TGCAAAA---TTA--AAACG--TCCTC-----------CAAAGG-G--TA-TCG-TGTGACA--T-A------TC-AAATTGAA---GGTCTTGACGAGTAG-AG---T-T--CAGCC--CGGGGGTGTTACGGG---------GT-CA--TTAAG-TGCA----------AAA-TG-------A--AAAAGTC---CGAAGG--GTATCGTGTGAC------A--TAT-CAAATTGAA---GGTCT-------TGAC-----GAGT-----TCAGCCCGGGGG------------TGTTACAGGGTCATTAAG-TGCAAT--G---TTTN----T----AANT--GAACAAAGG----GTATCGTGT----TACAT--ATCAAACTGAAAGTCTNGACGAGTAGAGT-T--CAGCCGGGGGGTGGGGGG-ATTTGGGCGACTTGTGTGTTGGCATCCCAACACAATTATCACTAGTTNCTTT
Reference ( gi|1 )            :                                                                                                                                        TCAGCCCAGGGGGTGTTC-TA-GG-TCATTAAG-TGC---------TA---GAT-----AAAGAACAT-----TGACCGAA----GAGTATCGTGTAACA------T-ATC-AAATTGAACGTCTCGACGAATAGAGTGCAAAATTTAAAAAAATGGCCGAAATTGATGGGTTCAGTTCC----GGGGG--TGTT-CAGGGGGTCATTATGTG---A--AA----T---------AAAAA---ATT-------GACCCAA--GG--GTG-TCGTGTGACA--T-A------TC-AAATTGAA---GGTCTCCATGAGTAG-AGT-T--CAGCCT-GG-GGTGTTCCAGGGTCATTAAGTGAACAAAGTTCAGTCCCGGGGGTGTTC-TA-GG-TCATTAAG-TGCA---------AAATA------AA---AAA---AATGACTGAAGG---T--A-TCG-TGTGACA--C-A------TC-AAATTGAACGGCTCT--ACGAGTAG-AG---T-T--CAGCATAGAGG-GT---G-----G----GG-------------T--CA--TTGAG-TGCAAAA--TTT---------A-----AAAT-GACC--GAAGG-G-TA-TC-ATGTGACA------TAT-TAAATTGAA---GGACTTGACAAGTGG---ACTTCAGCC-----CCGG----GG-----------------T--G-TTAT---G-TGCAAAA---TTA--AAACG--TTCTC-----------CGAAGG-G--TA-TCT-TGTGACA--T-A------TC-AAATTGAA---GGTCTTGACGAGTAG-AG---T-T--CAGCC--CGGGTGTGTTACGGG---------GT-CA--TTAAG-TGCA----------AAA-TG-------A--GAAAGTCCTCCGAAGG--TTATCTTTTGAC------G--TAT-CAAATTGAA---GGTCT-------TGAC-----GAGT-----TCAGCCCAGGGG------------TGTTACAGGGTCATTAAG-TGCG--------TTTA----A----AAAA--GAACAAATG----GTAATGTTT----TACAT--ATCAAACTGGAAGTCTGGACGAGGAGAGT-T--CAGCTGGGAGAAGGGAGG-ATTTGGGCGACTTGCGTGTTGGCATCCCAACACAATTATCACTAGTTACTTT
gi|2                          :                                                                                                                                        TCAGCCC-GGTGGTGTTA-CA-GGGTCATTAAG-CGCATTTTTTTTTA------------------AT-----TGAACAAA----GGGTATCGTGTTACA------T-ATC-ATACTGAAAGTCTGGACGAGT
gi|5                          : gtgcaccgttgcgtgggtggtaaagtagaacgtttcagcggactgtacgggtttcattaagtgcaaaaatgaaaagtcctcgaaggggtaatcttgtgacagctatcaaatgaaaaaggtcttgacgagtagagtTCAGCCCA-GGGGTGTTA-CAGGG-TAATTAAA-TGC---------tcagctggggggtgggggatttgggcgacttttgtgttggtatcccaacacaattatcactagtttgttttgtttttatcatatttc
gi|3                          :                                                                                                              gacatatcaaattgaaggtcttgatgagtaaagtGGGGGGGCTGGTA-TG-TTATCAAGCTGC----------------------AAAAAATTTACAAATGACCGAAAGCGGAGCA--ATGTGACA------TTATCCAAATTGAA-GTCTTTACGAGTAGAGTaattttatctttaattgaacaattggta
gi|4                          :                                                                aagaaaaacacaatgacaaagggagtatcggtgactatcaaattgatgtctccataagtagcagttcatccaaggggggggGGGGTGTTA-CA-GGGTCATTAAG-TGC---------AATTTGTTTTTTCAAAAA---T-----TGAACAAA----GGGTATCGTGTGACATACATGT-ATC-AAACTGAAAGTCTGGATGAGGAGAGTTCAattacagccagcggctggtaatggtcagcttgcgtgcaaaa
gi|5                          :                                                                                                                                                                                                                                         ACA------T-ATC-AAATTGAAGGTCTTGATGAGTAAAGTTCAgccggggggggggggggatttgggcgacttgtgtgttggcatcccaacacaattatcactagtttctttttatgttcgtgctaatttc
gi|3                          :                                                                                                                                                                                                                                                                                                                 gGTTCA--TCCAAGGGGGGG--GG----GGGGGGCTGGTATGTT---ATCAAGCTGC---------AAAAA---ATTTACAAATGACCGAA--AGCGGAG-CAATGTGACA--TTA------TCCAAATTGAA---G-TCTTTACGAGTAG-AGTATTACAGCCgcccaggggtgttacagggtaattaaatgcaattttatctttaattgaacaattggta
gi|2                          :                                                                                                                                                                                                                                                        aagaaaaacacaatgacaaagggagtatcggtgactatcaaattgatgtctccataagtagcaGTTTC----AGCGGACTGTA-C-GGGTTTCATTAAGTGCAAA--AA----T---------GAAAA---GTC---------CTCGAAGGG--GTAATCTTGTGACAGCT-A------TC-AAAT-GAAAAAGGTCTTGACGAGTAG-AGT-T--CAGCCC-GGTGGTGTTACAGGGTCATTAAGCGagcggctggtaatggtcagcttgcgtgcaaaa
gi|4                          :                                                                                                                                                                                                                                                                                                  gtgcaccgttgcgtgggtggtaaagtagaacGGGG--TGTTACAGGG--TCATTAAGTG---C--AA----TTTGTTTTTTCAAAA---ATT-------GAACAAA--GG--GTA-TCGTGTGACA--T-ACATGTATC-AAACTGAA---AGTCTGGATGAGGAG-AGT-T--CAGCCG-GG-GGcatttttttttaattgaacaaagggtatcgtgttacatatcatactgaaagtctggacgagttcagctggggggtgggggatttgggcgacttttgtgttggtatcccaacacaattatcactagtttgttttgtttttatcatatttc
gi|3                          :                                                                                                                                                                                                                                                                                                                                                                 --AA----G---------AAAAACACAAT-------GACAAAG--GGA-GTA-TCG-GTGAC---T-A------TC-AAATTGA----TGTCTCCATAAGTAGCAGT-T--CATCCA-AG-GGgggggggggatttgggcgacttgtgtgttggcatcccaacacaattatcactagtttctttttatgttcgtgctaatttc
gi|5                          :                                                                                                                                                                                                                                                                                                                                                                                                                            GACA--T-A------TC-AAATTGAA---GGTCTTGATGAGTAA-AGT-T--CAGCCCAGG-GGTGTTACAGGGTAATTAAATGggggggggggggctggtatgttatcaagctgcaaaaaatttacaaatgaccgaaagcggagcaatgtgacattatccaaattgaagtctttacgagtagagtattacagccagcggctggtaatggtcagcttgcgtgcaaaa
gi|4                          :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      -GG-GGTGTTACAGGGTCATTAAGTGcaattttatctttaattgaacaattggta
gi|2                          :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  AAGGTC-TTGA-CGAGTAGAGTTCAG-CCCGGTGGTGTTA-CA-GGGTCATTAAG-CGCATTTTTTTTTAATTG------AA---CAA---AG--------GG---T--A-TCG-TGTTACA--T-A------TC-ATACTGAAAGTCTGG--AC-----G-AG---T-T--CAGC-TGGGGG-GT---G-----G----GG-------------caatttgttttttcaaaaattgaacaaagggtatcgtgtgacatacatgtatcaaactgaaagtctggatgaggagagttcagccggggggggggggggatttgggcgacttgtgtgttggcatcccaacacaattatcactagtttctttttatgttcgtgctaatttc
gi|5                          :                                                                                                                                                                                                                                                                                                                                                                               gtgcaccgttgcgtgggtggtaaagtagaacgtttcagcggactgtacgggtttcattaagtgcaaaaatgaaaagtcctcgaaggggtaatcttgtgacagctatcaaatgaaaAAGGTC-TTGA-TGAGTAAAGTTCAG-CCCAGGGGTGTTA-CAGGG-TAATTAAA-TGCA---------Agatttgggcgacttttgtgttggtatcccaacacaattatcactagtttgttttgtttttatcatatttc
gi|3                          :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  gacatatcaaattgGGGGGGGCTGGTA-TG-TTATCAAGCTGCA---------AAA--------AATTTACA---AATGACCGAAAG---CGGA-GCAATGTGACA--TTA------TCCAAATTGAA-GTCTTT--ACGAGTAG-AG---TATTACAGC-CAGCGG-CT---G-----GTAATGG-------------T--CAGCTTGCG-TGCAAAA--ttttatctttaattgaacaattggta
gi|4                          :                                                                                                                                                                                                                                                                                                                                                                                                                                                aagaaaaacacaatgacaaagggagtatcggtgactatcaaattgatgtctccataagtagcagttcatccaaggggggggGGGGTGTTA-CA-GGGTCATTAAG-TGCA---------ATTTGTTTTTTCA---AAA---ATTGAACAAAGGG--T--A-TCG-TGTGACA--T-ACATGTATC-AAACTGAAAGTCTGG--ATGAGGAG-AG---T-T--CAGCCGGGGGG-GG---G-----G----GG-------------
gi|2                          :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                -TCATTAAG-TGCA---------AAA-A------TG---AAA---AGTCCTCGAAGGGG-T--AATCT-TGTGACAGCT-A------TC-AAATGAAAAAGGTCTTGACGAGTAG-AG---T-T--CAGCCCGGTGGTGTTACA-----G----GG-------------T--CA--TTAAG-CGCA-----TTT---------TTTTTTAATT-GAAC--AAAGG-G-TA-TC-GTGTTACA------TAT-CATACTGAA---AGTCTGGACGAG--------TTCAGCT-----GGGG----GG-----------------T--G-ggatttgggcgacttgtgtgttggcatcccaacacaattatcactagtttctttttatgttcgtgctaatttc
gi|3                          :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       gtgcaccgttgcgtgggtggtaaagtagaacgtttcagcggactgtacgggtt------AA---AAACACAATGAC-AAAGGGAGT--A-TCG--GTGAC---T-A------TC-AAATTGA-TGTCTCC--ATAAGTAGCAG---T-T--CATCCAAGGGG-GG---G-----G----GGGGGGGCTGGTATGT--TA--TCAAGCTGCAAAAAATTT---------AC----AAAT-GACC--GAAAGCG-GA-GCAATGTGACAT-----TATCCAAATTGAA---GT-CTTTACGAGTAGAGTATTACAGCCAGCGGCTGGTAATGG-----------------TCAGCTTGC---G-TGCAAAA---ggggatttgggcgacttttgtgttggtatcccaacacaattatcactagtttgttttgtttttatcatatttc
gi|5                          :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     aagGACA--T-A------TC-AAATTGAAGGTCTTG--ATGAGTAA-AG---T-T--CAGCCCAG-GG-GT---GTTACAG----GG-------------T--AA--TTAAA-TGCAA
gi|2                          :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              AGTAG-AACGTT-T--CAGCG--GACT-GT---AC----G----GG-------------TTTCA--TTAAG-TGCAAAA--ATG---------A-----AAA--GTCCTCGAAGG-GGTAATC-TTGTGACAGC----TAT-CAAAT-GAAAAAGGTCTTGACGAGTAG---AGTTCAGCC-----CGGT----GG-----------------T--G-TTA--------CAGGG---TCATTAAGCGCATTTTTTTTTAATTGAACAAAGG-G--TA-TCG-TGTTACA--T-A------TC-ATACTGAA---AGTCTGGAC-----G-AG---T-T--CAGCT--GGGGGGTGttttatctttaattgaacaattggta
gi|4                          :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                gtgcaccgttgcgtgggtggtaaGG-GT---GTTACAG----GG-------------T--CA--TTAAG-TGCAA----TTTGTTTTTTCAA-----AAATTGAAC--AAAGG-G-TA-TC-GTGTGACATACATGTAT-CAAACTGAA---AGTCTGGATGAGGAG---AGTTCAG-------CCGG----GG-----------------ggggatttgggcgacttttgtgttggtatcccaacacaattatcactagtttgttttgtttttatcatatttc
gi|3                          :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 gAAT-GACA--AAGGGAG-TA-TC-G-GTGAC-------TAT-CAAATTGAT---GT-CTCCATAAGTAGC--AGTTCATCC-----AAGG----GGGGGGGGGGGGGCTGGTAT--G-TTATCAAGCTGCAAAAAATTTAC-AAATG--A---C-----------CGAAAGCG--GA-GCAATGTGACA--TTA------TCCAAATTGAA---G-TCTTTACGAGTAG-AG---TATTACAGCCAGCGGCTG-GTAAT--G---------GT-CAGCTTGCG-TGCA----------AAA-ggggggggggatttgggcgacttgtgtgttggcatcccaacacaattatcactagtttctttttatgttcgtgctaatttc
gi|5                          :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   aagaaaaacacGACA------TAT-CAAATTGAA---GGTCTTGATGAGTAA---AGTTCAGCC-----CAGG----GG-----------------T--G-TTACAGGG-T----AA---TTA--AA
gi|2                          :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  AGCGG---ACTGTA---------CGG----GT-----------------TTCA-TTAA---G-TGCAAAA---ATG--AAAAG--TCCTC-----------GAAGGG-G--TAATCT-TGTGACAGCT-A------TC-AAAT-GAAAAAGGTCTTGACGAGTAG-AG---T-T--CAGCC--CGGTGGTGTTACAGG---------GT-CA--TTAAG-CGCATTTTTTTTT-AAT-TG-------A--A---------CAAAGG--GTATCGTGTTAC------A--TAT-CATACTGAA---AGTCT-------GGAC-----GAGT-----TCAGCTGGGGGG------------TGtgcaattttatctttaattgaacaattggta
gi|4                          :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                gtgcaccgttgcgtgggtggtaaagtagaacgtttcAAAA---TTG--AA---------------------CAAAGG-G--TA-TCG-TGTGACA--T-ACATGTATC-AAACTGAA---AGTCTGGATGAGGAG-AG---T-T--CAGCC--GGGGggggatttgggcgacttttgtgttggtatcccaacacaattatcactagtttgttttgtttttatcatatttc
gi|3                          :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     ggggtgttacagggtcattaagtgcaatttgttttttca-----------CAAAGG-GAGTA-TCG--GTGAC---T-A------TC-AAATTG-A---TGTCTCCATAAGTAGCAG---T-T--CATCC--AAGGGGGGGGGGGGGGGCTGGTATGT-TA--TCAAGCTGCAAAAAATTTACAAA-TG-------ACCGAAAG-----CGGAG----CA--ATGTGAC------AT-TATCCAAATTGAA----GTCT-------TTAC-----GAGT-------------AGAG------------TATTACAGggggggggggatttgggcgacttgtgtgttggcatcccaacacaattatcactagtttctttttatgttcgtgctaatttc
gi|5                          :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           aagaaaaacacaatgaGACA--T-A------TC-AAATTGAA---GGTCTTGATGAGTAA-AG---T-T--CAGCC--CAGGGGTGTTACAGG---------GT-AA--TTAAA-TGCA----------Accagcggctggtaatggtcagcttgcgtgcaaaa
gi|2                          :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  AGTAG-AACGTT-T--CAGC-----GGACTGT-ACGGG---------TTTCA--TTAAG-TGCA----------AAAATG-------A---AAAGTCCTC-GAAGGGGTAATCTTGTGAC------AGCTAT-CAAAT-GAAAAAGGTCT-------TGAC-----GAGTAGAGTTCAGCCCGGTGG------------TGTTACAGGGTCATTAAG-CGCA--------TTTT----TTTTTAATT--GAACAAAGG----GTATCGTGT----TACAT--ATCATACTGAAAGTCTGGACGAG-----T-T--CAGCTGGGGGGTGGG-GG-ATTTGGGCGACTTTTGTGTTGGTATCCCAACACAATTATCACTAGTTttttatctttaattgaacaattggta
gi|4                          :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    gtgcaccgttgcgtgggtggtaaGGGGTGTTACAGG---------GT-CA--TTAAG-TGCA----------ATT-TGTTTTTTCA--AAAA-TTGAACAAAGG--GTATCGTGTGACATACATG--TAT-CAAACTGAA---AGTCT-------GGATGAGGAGAGT-----TCAGCCGGGGGG------------tgttttgtttttatcatatttc
gi|3                          :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      TGAC---------TAT-CAAATTGA----TGTCTCCATAAGTAGC------AGT-----TCATCCAAGGGGGGGGGGGGGGGCTGGTAT---GTTATCAAGCTGCAAAAAA---TTTA----C----AAAT--GACCGAAAGCGGAGCAATGTG------ACATT-ATCCAAATTGAAGTCTTTACGAGTAGAGTATTACAGCCAGCGGCTGGTAA-----TGGTCAGCTTGCGTGggggggggatttgggcgacttgtgtgttggcatcccaacacaattatcactagtttctttttatgttcgtgctaatttc
gi|5                          :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        aagaaaaacacaatgacaaagggagtatcggGAC------A--TAT-CAAATTGAA---GGTCT-------TGAT-----GAGTAAAGTTCAGCCCAGGGG------------TGTTACAGGGTAATTAAA-TGCAAT------TTTATCTTT----AATT--GAACAATTG----GTAcaaaa
gi|4                          :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         GGGG------------TGTTACAGGGTCATTAAG-TGCAATTTGTTTTTTC----A----AAAATTGAACAAAGG----GTATCGTGTGACATACATGTATCAAACTGAAAGTCTGGATGAGGAGAGT-T--CAGCCGGGGGGGGGGGGGGATTTGGGCGACTTGTGTGTTGGCATCCCAACACAATTATCACTAGTTTCTTT
gi|5                          :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      ACAT--ATCAAATTGAAGGTCTTGATGAGTAAAGT-T--CAGCttatgttcgtgctaatttc
gi|8                          :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         gGGGGA-ATTTGGGCGACTTGTGTGTTGGCATCCCAACACAATTATCACTAGTTACTTccaggggtgttacagggtaattaaatgcaattttatctttaattgaacaattggta
gi|18                         :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    GGGCGACTTGTGTGTTGGCTTTCCAACACAATTATCActttttcttacaaattt

Unaligned ( gi|6 ): TTTTTCAATCATTGTTCAGCGTGCAGTCAACATGCGTTCAGCGTGCGGTCACCGTGTGCGTGTGGTAAAGTTGAATGTTTCAGGGACTGTAA
Unaligned ( gi|7 ): CATCATCACCGTTCACCAAATTATTGTTTGCTCTGCATGCGGGTCACCGTGCGTGTGTGTAAAGTAGAACGTTTCAGGGACTGTATCA
Unaligned ( gi|9 ): CATTATTCATTGATTGTTCAGCTGCAGTCACCGTGCGTGTGGTAAAGTAGAACATTTCAGGGACTGTA
Unaligned ( gi|10 ): ATGCGGTTCTATCATTGCGTGTGCGTAAAGTAGAACGAGTAGTTTCAGCGACTGCTACCA
Unaligned ( gi|11 ): GTGCCGGTCACCTGTGCGTGTGCGTAAAGTAGAGAGCGTTTTCAGGCTTACTATGC
Unaligned ( gi|12 ): GTCACCGGCTTCTGCGTGCGGTCCGTGCGTGTGTATGAACGTTTCAGGGACTGTA
Unaligned ( gi|13 ): CTGCGTGCGTCATCCGATGGCGTAGGGGTAAAGTAGAACGTTCAGGGACTGATAT
Unaligned ( gi|14 ): GCATGCGGTCACCGTGCGTGTGGTAAAGGTAGAACGTTTCAGGGACTGTATC
Unaligned ( gi|15 ): TGCGGGTCCCCGTGCGTGGTCGGTAAAGGTAGAACGTTTCAGGGAACTGTC
Unaligned ( gi|16 ): TGTATGCGTTCACTGTTCAAGTGGGAACGAAGAACGTTTCAGGGACTGTAT
Unaligned ( gi|17 ): CAGCGTGCGGTCACCATTCGTTCTGCATGCGATCACCGTGTGTG
Unaligned ( gi|19 ): GTGGGTAAAGGTAGAACGTTTCAGGGACTGTATATATA
Unaligned ( gi|20 ): TGTAAAGTAGACCGTTTCAGGGACTGTACCAAGC
Unaligned ( gi|21 ): GCGTGTGGTAAAGTAGAACGTTTCAGGGATTGCA

lowQualScore                  :                                   111111111111                                                                                                                                                                                                                                                                                                                                                                 1111111111111                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     
lowQualScore                  :                  22   4           222222222222     1                               1                 1  22222222222222222222222222222          8888        7777          1      11           1                                  22                          1                11         4            22   4                      333      1     33     1     1           33     1        2        111          1111111111111        2       22    1             2     22       2   2         1                 3333     77777777777777777777                                    1                                    333      222  11   1       2              2      44444   22     22222  1       11            222             66666                                 4444444444444444444                      2222     11                       11                     11                                                     
lowQualScore                  :                  11   0           555555555555     5     6         6          6    5    1     6      5  99999999999999999999999999999          5555        6666      6   7      22           5      6                           11 6               6        5             6  22 6       0            11   0              1       555 6    0     55     5     5           11 3   5        0      2 999     3    0000000000000        0       77    5             0 3 3 66       0   0         5 4   2         2 8888     22222222222222222222                     6    6         5                                    555      000  33   5     2 0              0      00000   77     44444  5 2     88        7   333             66666       0                         4444444444444444444  1        2          8888     88                1      44         0      7    22                                                1    
lowQualScore                  :                  ..   .           ............     .     .         .          .    .    .     .      .  .............................          ....        ....      .   .      ..           .      .                           .. .               .        .             .  .. .       .            ..   .              .       ... .    .     ..     .     .           .. .   .        .      . ...     .    .............        .       ..    .             . . . ..       .   .         . .   .         . ....     ....................                     .    .         .                                    ...      ...  ..   .     . .              .      .....   ..     .....  . .     ..        .   ...             .....       .                         ...................  .        .          ....     ..                .      ..         .      .    ..                                                .    
lowQualScore                  :                  00   0           000000000000     0     0         0          0    0    0     0      0  00000000000000000000000000000          0000        0000      0   0      00           0      0                           00 0               0        0             0  00 0       0            00   0              0       000 0    5     00     5     5           55 0   0        0      5 000     0    0000000000000        0       55    0             0 0 0 00       0   0         0 0   5         5 5555     00000000000000000000                     0    0         0                                    000      000  00   5     5 0              0      55555   55     55555  0 5     33        3   333             77777       7                         0000000000000000000  0        5          3333     33                0      33         7      7    55                                                0    
consensus                     : TCAGCCCAGGGGGTGTTCTAGG-TCATTAAGTGCTAGATAAAGAACATTGACCGAAGAGTATCGTGTAACATATCAAATTGAACGTCTCGACGAATAGAGTGCAAAATTTAAAAAAATGGCCGAAATTGATGGGTTCAGTTCC----GGGGGTGTTCAGGGGGTCATTATGTGAAATAAAAAATTGACCCAAGGGTGTCGTGTGACATATCAAATTGAAGGTCTCCATGAGTAGAGTTCAGCCTGGGGTGTTCCAGGGTCATTAAGTGAACAAAGTTCAGTCCCGGGGGTGTTCTAGG-TCATTAAGTGCAAAATGAAAAACACAATGACNGAGGGAGTATCGTGTGACACATCAAATTGANCGNCTCCACGAGTAGCAGTTCANCNNAGGGGGNGGGGGGGGGCTGGTATGTCATCGAGCTGCAAAAAATTTACAAATGACCGAAGGCGNANCAATGTGACATTATCCAAATTGAAGGNCTTNACGAGTGGANTATTACAGCCAGCGGCCGGTAATGGTCAGCTTGCGTGCAAAATTAAAACGTTCTCCGAAGGGTATCTTGTGACATATCAAATTGAAGGTCTTGACGAGTAGAGCGTTTCAGCCCGGGNNTGTTACGGGNTTCATTAAGTGCAAAAATGAGAAAGTCCTCCTCGAAGGNGTAATCTTNTGACG--TATCAAATTGAA---GGTCTTGACGAGTAGAGTTCAGCCCGGGGGTGTTACAGGGTCATTAAGTGCAAT--NTT---TTTT----AATTGAACAAANGGTATCGTGT----TACAT--ATCAAACTGAAAGTCTGGACGAGGAGAGTTCAGCCGGGGGGNGGGG-GGATTTGGGCGACTTGTGTGTTGGCATCCCAACACAATTATCACTAGTTNCTTT
Reference ( family-1791 )     : TCAGCCCAGGGGGTGTTACAGGGTCATTAAGTGC------AAAAA-ATTGAACGAAGGGTATCGTGTGACATATCAAACTGAAAGTCTNGACGAGTAGAGTTCANNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTTCAGTTCCAAGGGGGGGTGTC---GGGGTCGTTAAGTGAAACGAAAAATTGACCGAAGGGTATCGTGTGACATATCAAATTGAAGGTCTTGACGAGTAGAGTTCAGCCCGGGGTGTTACAGGGTCATTAAGCGAGTAGAGTTCAG-CCCGGGGGTGTTACAGGGTCATTAAGTGCAAANTGAAAAA---AGTGACCGAAGG-GTATCGTGTGACATATCAAATTGAAAGTCTCGACGAGTAG-AGTTCAGCCCGGGGGGTGGGG-------------TCATTAAG-TGCAAAA--TTTACAAATGACCGAAGG-GTATC-GTGTGACA-TAT-CAAATTGAAGGTCTTGACGAGTAGAGT-T--CAGCC-----CNGG----GGT--G-TTACGTGCAAAATTAAAACGTCCTCCAAAGGGTATCGTGTGACATATCAAATTGAAGGTCTTGACGAGTAGAG---TTCAGCCCGGGGGTGTTACGGGGT-CATTAAGTGCAAAA-TGAAAAAG---TCC--GAAGGG-TA-TCGTGTGACA--TATCAAATTGAA---GGTCTTGACGAGT-----TCAGCCCGGGGGTGTTACAGGGTCATTAAGTGCAAT--GTT---TNT-----AANTGAACAAAGGGTATCGTGT----TACAT--ATCAAACTGAAAGTCTNGACGAGTAGAGTTCAGCCGGGGGGTGGGG-GGATTTGGGCGACTTGTGTGTTGGCATCCCAACACAATTATCACTAGTTNCTTT
gi|1                          : TCAGCCCAGGGGGTGTTCTAGG-TCATTAAGTGCTAGATAAAGAACATTGACCGAAGAGTATCGTGTAACATATCAAATTGAACGTCTCGACGAATAGAGTGCAAAATTTAAAAAAATGGCCGAAATTGATGGGTTCAGTTCC----GGGGGTGTTCAGGGGGTCATTATGTGAAATAAAAAATTGACCCAAGGGTGTCGTGTGACATATCAAATTGAAGGTCTCCATGAGTAGAGTTCAGCCTGGGGTGTTCCAGGGTCATTAAGTGAACAAAGTTCAGTCCCGGGGGTGTTCTAGG-TCATTAAGTGCAAAATAAAAAA---AATGACTGAAGG--TATCGTGTGACACATCAAATTGAACGGCTCTACGAGTAG-AGTTCAGCATAGAGGGTGGGG-------------TCATTGAG-TGCAAAA--TTTA-AAATGACCGAAGG-GTATC-ATGTGACA-TAT-TAAATTGAAGGACTTGACAAGTGGACT-T--CAGCC-----CCGG----GGT--G-TTATGTGCAAAATTAAAACGTTCTCCGAAGGGTATCTTGTGACATATCAAATTGAAGGTCTTGACGAGTAGAG---TTCAGCCCGGGTGTGTTACGGGGT-CATTAAGTGCAAAA-TGAGAAAGTCCTCC--GAAGGT-TA-TCTTTTGACG--TATCAAATTGAA---GGTCTTGACGAGT-----TCAGCCCAGGGGTGTTACAGGGTCATTAAGTGC-----GTT---TAA-----AAAAGAACAAATGGTAATGTTT----TACAT--ATCAAACTGGAAGTCTGGACGAGGAGAGTTCAGCTGGGAGAAGGGA-GGATTTGGGCGACTTGCGTGTTGGCATCCCAACACAATTATCACTAGTTACTTT
gi|18                         :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  GGGCGACTTGTGTGTTGGCTTTCCAACACAATTATCA
gi|2                          :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                             ggAGTAGAACGTTTCAGC---GGACTGT-ACGGGTTTCATTAAGTGCAAAAATGAAAA-G---TCCTCGAAGGGGTAATCTTGTGACAGCTATCAAAT-GAAAAAGGTCTTGACGAGTAGAGTTCAGCCCGGTGGTGTTACAGGGTCATTAAGCGCATT--TTT---TTTT----AATTGAACAAAGGGTATCGTGT----TACAT--ATCATACTGAAAGTCTGGACGAGT-----TCAGCTGGGGGGTGGGG--GATTTGGGCGACTTTTGTGTTGGTATCCCAACACAATTATCACTAGTTTGTTT
gi|3                          :                                                                                                                                                                                                                                                                                                     gtgcaccgttgcgtgggtggtaaGAAAAACACAATGACAAAGGGAGTATCG-GTGAC-TATCAAATTGAT-GTCTCCATAAGTAGCAGTTCATCCAAGGGGGGGGGGGGGGGCTGGTATGTTATCAAGCTGCAAAAAATTTACAAATGACCGAAAGCGGAGCAATGTGACATTATCCAAATTGAA-GTCTTTACGAGTAGAGTATTACAGCCAGCGGCTGGTAATGGTCAGCTTGCGTGCAAAAtgtttttatcatatttc
gi|4                          :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              aaGGGGTGTTACAGGGTCATTAAGTGCAATTTGTT---TTTTCAAAAATTGAACAAAGGGTATCGTGTGACATACATGTATCAAACTGAAAGTCTGGATGAGGAGAGTTCAGCCGGGGGGGGGGGGGGATTTGGGCGACTTGTGTGTTGGCATCCCAACACAATTATCACTAGTTTCTTT
gi|5                          :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 GACA--TATCAAATTGAA---GGTCTTGATGAGTAAAGTTCAGCCCAGGGGTGTTACAGGGTAATTAAATGCAAT--TTTATCTTT-----AATTGAACAATTGGTAttatgttcgtgctaatttc
gi|8                          :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        GGG-GAATTTGGGCGACTTGTGTGTTGGCATCCCAACACAATTATCACTAGTTACTT

Unaligned ( gi|6 ): TTTTTCAATCATTGTTCAGCGTGCAGTCAACATGCGTTCAGCGTGCGGTCACCGTGTGCGTGTGGTAAAGTTGAATGTTTCAGGGACTGTAA
Unaligned ( gi|7 ): CATCATCACCGTTCACCAAATTATTGTTTGCTCTGCATGCGGGTCACCGTGCGTGTGTGTAAAGTAGAACGTTTCAGGGACTGTATCA
Unaligned ( gi|9 ): CATTATTCATTGATTGTTCAGCTGCAGTCACCGTGCGTGTGGTAAAGTAGAACATTTCAGGGACTGTA
Unaligned ( gi|10 ): ATGCGGTTCTATCATTGCGTGTGCGTAAAGTAGAACGAGTAGTTTCAGCGACTGCTACCA
Unaligned ( gi|11 ): GTGCCGGTCACCTGTGCGTGTGCGTAAAGTAGAGAGCGTTTTCAGGCTTACTATGC
Unaligned ( gi|12 ): GTCACCGGCTTCTGCGTGCGGTCCGTGCGTGTGTATGAACGTTTCAGGGACTGTA
Unaligned ( gi|13 ): CTGCGTGCGTCATCCGATGGCGTAGGGGTAAAGTAGAACGTTCAGGGACTGATAT
Unaligned ( gi|14 ): GCATGCGGTCACCGTGCGTGTGGTAAAGGTAGAACGTTTCAGGGACTGTATC
Unaligned ( gi|15 ): TGCGGGTCCCCGTGCGTGGTCGGTAAAGGTAGAACGTTTCAGGGAACTGTC
Unaligned ( gi|16 ): TGTATGCGTTCACTGTTCAAGTGGGAACGAAGAACGTTTCAGGGACTGTAT
Unaligned ( gi|17 ): CAGCGTGCGGTCACCATTCGTTCTGCATGCGATCACCGTGTGTG
Unaligned ( gi|19 ): GTGGGTAAAGGTAGAACGTTTCAGGGACTGTATATATA
Unaligned ( gi|20 ): TGTAAAGTAGACCGTTTCAGGGACTGTACCAAGC
Unaligned ( gi|21 ): GCGTGTGGTAAAGTAGAACGTTTCAGGGATTGCA

lowQualScore                  :                                                                                                                                                                                                                                                                                                                            222            11     1     1           11              1                     4444444444444        1       11    1             1      1        1   1        1                 2222     22222    2222   2222                                                                         222      222       1       1              1   1         555     22            111            222             11                                     333333     2222                      2222     11                                              1                                                      
lowQualScore                  :                                                                                                                                                                                                                                                                                                                            000      1     88     5     5           66 1            5      1 22      1    7777777777777        5       88    5             5 1 1  5        5   5        5 1   1         1 5555     55555    4444   3333                                                                         000      000  22   5     1 5              5   5         777     33 4     1    999        7   333             11          0                          555555     1111           1          8888     88                    6             0      77   0                                                 1    
lowQualScore                  :                                                                                                                                                                                                                                                                                                                            ...      .     ..     .     .           .. .            .      . ..      .    .............        .       ..    .             . . .  .        .   .        . .   .         . ....     .....    ....   ....                                                                         ...      ...  ..   .     . .              .   .         ...     .. .     .    ...        .   ...             ..          .                          ......     ....           .          ....     ..                    .             .      ..   .                                                 .    
lowQualScore                  :                                                                                                                                                                                                                                                                                                                            555      0     00     5     5           00 0            0      0 00      0    0000000000000        0       55    0             0 0 0  5        5   0        0 0   0         0 0000     55555    5555   0000                                                                         555      000  00   5     0 5              5   0         555     00 0     0    000        3   333             00          7                          888888     2222           0          3333     33                    7             7      77   0                                                 0    
consensus                     : TCAGCCCAGGGGGTGTTCTAGGTCATTAAGTGCTAGATAAAGAACATTGACCGAAGAGTATCGTGTAACATATCAAATTGAACGTCTCGACGAATAGAGTGCAAAATTTAAAAAAATGGCCGAAATTGATGGGTTCAGTTCCGGGGGTGTTCAGGGGGTCATTATGTGAAATAAAAAATTGACCCAAGGGTGTCGTGTGACATATCAAATTGAAGGTCTCCATGAGTAGAGTTCAGCCTGGGGTGTTCCAGGGTCATTAAGTGAACAAAGTTCAGTCCCGGGGGTGTTCTAGGTCATTAAGTGCAAAATGAAAAACACAATGACNGAGGGAGTATCGTGTGACACATCAAATTGANCGNCTCCACGAGTAGCAGTTCANCNNAGGGGGNGGGGGGGGGCTGGTATGTCATCGAGCTGCAAAAAATTTACAAATGACCGAAGGCGNANCAATGTGACATTATCCAAATTGAAGGNCTTNACGAGTGGANTATTACAGCCAGCGGCCGGTAATGGTCAGCTTGCGTGCAAAATTAAAACGTTCTCCGAAGGGTATCTTGTGACATATCAAATTGAAGGTCTTGACGAGTAGAGCGTTTCAGCCCGGGNNTGTTACGGGNTTCATTAAGTGCAAAAATGAGAAAGTCCTCC--GAAGGGGTNATCTTNTGACG--TATCAAATTGAA---GGTCTTGACGAGTAGAGTTCAGCCCGGGGGTGTTACAGGGTCATTAAGTGCAATTT--TTTTT----AATTGAACAAANGGTATCGTGT----TACAT--ATCAAACTGAAAGTCTGGACGAGGAGAGTTCAGCCGGGGGGNGGGG-GGATTTGGGCGACTTGTGTGTTGGCATCCCAACACAATTATCACTAGTTNCTTT
Reference ( family-1791 )     : TCAGCCCAGGGGGTGTTCTAGGTCATTAAGTGCTAGATAAAGAACATTGACCGAAGAGTATCGTGTAACATATCAAATTGAACGTCTCGACGAATAGAGTGCAAAATTTAAAAAAATGGCCGAAATTGATGGGTTCAGTTCCGGGGGTGTTCAGGGGGTCATTATGTGAAATAAAAAATTGACCCAAGGGTGTCGTGTGACATATCAAATTGAAGGTCTCCATGAGTAGAGTTCAGCCTGGGGTGTTCCAGGGTCATTAAGTGAACAAAGTTCAGTCCCGGGGGTGTTCTAGGTCATTAAGTGCAAAATGAAAAACACAATGACNGAGGGAGTATCGTGTGACACATCAAATTGANCGNCTCCACGAGTAGCAGTTCANCNNAGGGGGNGGGGGGGGGCTGGTATGTCATCGAGCTGCAAAAAATTTACAAATGACCGAAGGCGNANCAATGTGACATTATCCAAATTGAAGGNCTTNACGAGTGGANTATTACAGCCAGCGGCCGGTAATGGTCAGCTTGCGTGCAAAATTAAAACGTTCTCCGAAGGGTATCTTGTGACATATCAAATTGAAGGTCTTGACGAGTAGAGCGTTTCAGCCCGGGNNTGTTACGGGNTTCATTAAGTGCAAAAATGAGAAAGTCCTCCTCGAAGGNGTAATCTTNTGACG--TATCAAATTGAA---GGTCTTGACGAGTAGAGTTCAGCCCGGGGGTGTTACAGGGTCATTAAGTGCAATNT--TTTTT----AATTGAACAAANGGTATCGTGT----TACAT--ATCAAACTGAAAGTCTGGACGAGGAGAGTTCAGCCGGGGGGNGGGG-GGATTTGGGCGACTTGTGTGTTGGCATCCCAACACAATTATCACTAGTTNCTTT
gi|1                          : TCAGCCCAGGGGGTGTTCTAGGTCATTAAGTGCTAGATAAAGAACATTGACCGAAGAGTATCGTGTAACATATCAAATTGAACGTCTCGACGAATAGAGTGCAAAATTTAAAAAAATGGCCGAAATTGATGGGTTCAGTTCCGGGGGTGTTCAGGGGGTCATTATGTGAAATAAAAAATTGACCCAAGGGTGTCGTGTGACATATCAAATTGAAGGTCTCCATGAGTAGAGTTCAGCCTGGGGTGTTCCAGGGTCATTAAGTGAACAAAGTTCAGTCCCGGGGGTGTTCTAGGTCATTAAGTGCAAAATAAAAAA---AATGACTGAAGG--TATCGTGTGACACATCAAATTGAACGGCTCTACGAGTAG-AGTTCAGCATAGAGGGTGGGG-------------TCATTGAG-TGCAAAA--TTTA-AAATGACCGAAGG-GTATCA-TGTGACAT-ATT-AAATTGAAGGACTTGACAAGTGGACT--T-CAGCC-----CCGG----GGT--G-TTATGTGCAAAATTAAAACGTTCTCCGAAGGGTATCTTGTGACATATCAAATTGAAGGTCTTGACGAGTAGAG---TTCAGCCCGGGTGTGTTACGGGGT-CATTAAGTGCAAAA-TGAGAAAGTCCTCC--GAAGG--TTATCTTTTGACG--TATCAAATTGAA---GGTCTTGACGAGT-----TCAGCCCAGGGGTGTTACAGGGTCATTAAGTGCG------TTTAA----AAAAGAACAAATGGTAATGTTT----TACAT--ATCAAACTGGAAGTCTGGACGAGGAGAGTTCAGCTGGGAGAAGGGA-GGATTTGGGCGACTTGCGTGTTGGCATCCCAACACAATTATCACTAGTTACTTT
gi|18                         :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         GGGCGACTTGTGTGTTGGCTTTCCAACACAATTATCA
gi|2                          :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       ggAGTAGAACGTTTCAGC---GGACTGT-ACGGGTTTCATTAAGTGCAAAAATGA-AAAGTCCTC---GAAGGGGTAATCTTGTGACAGCTATCAAAT-GAAAAAGGTCTTGACGAGTAGAGTTCAGCCCGGTGGTGTTACAGGGTCATTAAGCGCATTTT--TTTTT----AATTGAACAAAGGGTATCGTGT----TACAT--ATCATACTGAAAGTCTGGAC-----GAGTTCAGCTGGGGGGT-GGG-GGATTTGGGCGACTTTTGTGTTGGTATCCCAACACAATTATCACTAGTTTGTTT
gi|3                          :                                                                                                                                                                                                                                                                                               gtgcaccgttgcgtgggtggtaaGAAAAACACAATGACAAAGGGAGTATCG-GTGAC-TATCAAATTGAT-GTCTCCATAAGTAGCAGTTCATCCAAGGGGGGGGGGGGGGGCTGGTATGTTATCAAGCTGCAAAAAATTTACAAATGACCGAAAGCGGAGCAATGTGACATTATCCAAATTGAA-GTCTTTACGAGTAGAGTATTACAGCCAGCGGCTGGTAATGGTCAGCTTGCGTGCAAAAtgtttttatcatatttc
gi|4                          :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        aaGGGGTGTTACAGGGTCATTAAGTGCAATTTGTTTTTTCAAAAATTGAACAAAGGGTATCGTGTGACATACATGTATCAAACTGAAAGTCTGGATGAGGAGAGTTCAGCCGGGGGGGGGGGGGGATTTGGGCGACTTGTGTGTTGGCATCCCAACACAATTATCACTAGTTTCTTT
gi|5                          :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           GACA--TATCAAATTGAA---GGTCTTGATGAGTAAAGTTCAGCCCAGGGGTGTTACAGGGTAATTAAATGCAATTTTATCTTT----AATTGAACAATTGGTAttatgttcgtgctaatttc
gi|8                          :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               GGG-GAATTTGGGCGACTTGTGTGTTGGCATCCCAACACAATTATCACTAGTTACTT

Unaligned ( gi|6 ): TTTTTCAATCATTGTTCAGCGTGCAGTCAACATGCGTTCAGCGTGCGGTCACCGTGTGCGTGTGGTAAAGTTGAATGTTTCAGGGACTGTAA
Unaligned ( gi|7 ): CATCATCACCGTTCACCAAATTATTGTTTGCTCTGCATGCGGGTCACCGTGCGTGTGTGTAAAGTAGAACGTTTCAGGGACTGTATCA
Unaligned ( gi|9 ): CATTATTCATTGATTGTTCAGCTGCAGTCACCGTGCGTGTGGTAAAGTAGAACATTTCAGGGACTGTA
Unaligned ( gi|10 ): ATGCGGTTCTATCATTGCGTGTGCGTAAAGTAGAACGAGTAGTTTCAGCGACTGCTACCA
Unaligned ( gi|11 ): GTGCCGGTCACCTGTGCGTGTGCGTAAAGTAGAGAGCGTTTTCAGGCTTACTATGC
Unaligned ( gi|12 ): GTCACCGGCTTCTGCGTGCGGTCCGTGCGTGTGTATGAACGTTTCAGGGACTGTA
Unaligned ( gi|13 ): CTGCGTGCGTCATCCGATGGCGTAGGGGTAAAGTAGAACGTTCAGGGACTGATAT
Unaligned ( gi|14 ): GCATGCGGTCACCGTGCGTGTGGTAAAGGTAGAACGTTTCAGGGACTGTATC
Unaligned ( gi|15 ): TGCGGGTCCCCGTGCGTGGTCGGTAAAGGTAGAACGTTTCAGGGAACTGTC
Unaligned ( gi|16 ): TGTATGCGTTCACTGTTCAAGTGGGAACGAAGAACGTTTCAGGGACTGTAT
Unaligned ( gi|17 ): CAGCGTGCGGTCACCATTCGTTCTGCATGCGATCACCGTGTGTG
Unaligned ( gi|19 ): GTGGGTAAAGGTAGAACGTTTCAGGGACTGTATATATA
Unaligned ( gi|20 ): TGTAAAGTAGACCGTTTCAGGGACTGTACCAAGC
Unaligned ( gi|21 ): GCGTGTGGTAAAGTAGAACGTTTCAGGGATTGCA

lowQualScore                  :                                                                                                                                                                                                                                                                                                                            222           11      1     1           11              1                    4444444444444         1   11        1             1     1        1   1         1                 2222     22222    2222   2222                                                                         222      222       1     11           1       1         1   11              111            222                                                    222222     2222                      2222     11                                              1                                                      
lowQualScore                  :                                                                                                                                                                                                                                                                                                                            000      1    88      5     5           66 1            5      1 22      1   7777777777777         5   88        5             5 1 1 5        5   5         5 1   1         1 5555     55555    4444   3333                                                                         000      000  22   5     66           5       5         5   77   1     1    999        7   333         6               0                          888888     1111           1          8888     88                    6             0      77   0                                                 1    
lowQualScore                  :                                                                                                                                                                                                                                                                                                                            ...      .    ..      .     .           .. .            .      . ..      .   .............         .   ..        .             . . . .        .   .         . .   .         . ....     .....    ....   ....                                                                         ...      ...  ..   .     ..           .       .         .   ..   .     .    ...        .   ...         .               .                          ......     ....           .          ....     ..                    .             .      ..   .                                                 .    
lowQualScore                  :                                                                                                                                                                                                                                                                                                                            555      0    00      5     5           00 0            0      0 00      0   0000000000000         0   55        0             0 0 0 5        5   0         0 0   0         0 0000     55555    5555   0000                                                                         555      000  00   5     55           5       0         0   55   0     0    000        3   333         7               7                          222222     2222           0          3333     33                    7             7      77   0                                                 0    
consensus                     : TCAGCCCAGGGGGTGTTCTAGGTCATTAAGTGCTAGATAAAGAACATTGACCGAAGAGTATCGTGTAACATATCAAATTGAACGTCTCGACGAATAGAGTGCAAAATTTAAAAAAATGGCCGAAATTGATGGGTTCAGTTCCGGGGGTGTTCAGGGGGTCATTATGTGAAATAAAAAATTGACCCAAGGGTGTCGTGTGACATATCAAATTGAAGGTCTCCATGAGTAGAGTTCAGCCTGGGGTGTTCCAGGGTCATTAAGTGAACAAAGTTCAGTCCCGGGGGTGTTCTAGGTCATTAAGTGCAAAATGAAAAACACAATGACNGAGGGAGTATCGTGTGACACATCAAATTGANCGNCTCCACGAGTAGCAGTTCANCNNAGGGGGNGGGGGGGGGCTGGTATGTCATCGAGCTGCAAAAAATTTACAAATGACCGAAGGCGNANCAATGTGACATTATCCAAATTGAAGGNCTTNACGAGTGGANTATTACAGCCAGCGGCCGGTAATGGTCAGCTTGCGTGCAAAATTAAAACGTTCTCCGAAGGGTATCTTGTGACATATCAAATTGAAGGTCTTGACGAGTAGAGCGTTTCAGCCCGGGNNTGTTACGGGNTTCATTAAGTGCAAAAATGAGAAAGTCCTCCGAAGGGGTNATCTTNTGACG--TATCAAATTGAA---GGTCTTGACGAGTAGAGTTCAGCCCGGGGGTGTTACAGGGTCATTAAGTGCAATTT--TTTTT----AATTGAACAAANGGTATCGTGT----TACAT--ATCAAACTGAAAGTCTGGACGAGGAGAGTTCAGCCGGGGGGNGGGG-GGATTTGGGCGACTTGTGTGTTGGCATCCCAACACAATTATCACTAGTTNCTTT
Reference ( family-1791 )     : TCAGCCCAGGGGGTGTTCTAGGTCATTAAGTGCTAGATAAAGAACATTGACCGAAGAGTATCGTGTAACATATCAAATTGAACGTCTCGACGAATAGAGTGCAAAATTTAAAAAAATGGCCGAAATTGATGGGTTCAGTTCCGGGGGTGTTCAGGGGGTCATTATGTGAAATAAAAAATTGACCCAAGGGTGTCGTGTGACATATCAAATTGAAGGTCTCCATGAGTAGAGTTCAGCCTGGGGTGTTCCAGGGTCATTAAGTGAACAAAGTTCAGTCCCGGGGGTGTTCTAGGTCATTAAGTGCAAAATGAAAAACACAATGACNGAGGGAGTATCGTGTGACACATCAAATTGANCGNCTCCACGAGTAGCAGTTCANCNNAGGGGGNGGGGGGGGGCTGGTATGTCATCGAGCTGCAAAAAATTTACAAATGACCGAAGGCGNANCAATGTGACATTATCCAAATTGAAGGNCTTNACGAGTGGANTATTACAGCCAGCGGCCGGTAATGGTCAGCTTGCGTGCAAAATTAAAACGTTCTCCGAAGGGTATCTTGTGACATATCAAATTGAAGGTCTTGACGAGTAGAGCGTTTCAGCCCGGGNNTGTTACGGGNTTCATTAAGTGCAAAAATGAGAAAGTCCTCCGAAGGGGTNATCTTNTGACG--TATCAAATTGAA---GGTCTTGACGAGTAGAGTTCAGCCCGGGGGTGTTACAGGGTCATTAAGTGCAATTT--TTTTT----AATTGAACAAANGGTATCGTGT----TACAT--ATCAAACTGAAAGTCTGGACGAGGAGAGTTCAGCCGGGGGGNGGGG-GGATTTGGGCGACTTGTGTGTTGGCATCCCAACACAATTATCACTAGTTNCTTT
gi|1                          : TCAGCCCAGGGGGTGTTCTAGGTCATTAAGTGCTAGATAAAGAACATTGACCGAAGAGTATCGTGTAACATATCAAATTGAACGTCTCGACGAATAGAGTGCAAAATTTAAAAAAATGGCCGAAATTGATGGGTTCAGTTCCGGGGGTGTTCAGGGGGTCATTATGTGAAATAAAAAATTGACCCAAGGGTGTCGTGTGACATATCAAATTGAAGGTCTCCATGAGTAGAGTTCAGCCTGGGGTGTTCCAGGGTCATTAAGTGAACAAAGTTCAGTCCCGGGGGTGTTCTAGGTCATTAAGTGCAAAATAAAAAA---AATGACTGAAG--GTATCGTGTGACACATCAAATTGAACGGCTCTACGAGTAG-AGTTCAGCATAGAGGGTGGG-------------GTCATTGAG-TGC--AAAATTTA-AAATGACCGAAGG-GTATC-ATGTGACA-TAT-TAAATTGAAGGACTTGACAAGTGGACT-T--CAGCC-----CCGG----GGT--G-TTATGTGCAAAATTAAAACGTTCTCCGAAGGGTATCTTGTGACATATCAAATTGAAGGTCTTGACGAGTAGAG---TTCAGCCCGGGTGTGTTACGGGG-TCATTAAGTGC-AAAATGAGAAAGTCCTCCGAA--GGTTATCTTTTGACG--TATCAAATTGAA---GGTCTTGAC-----GAGTTCAGCCCAGGGGTGTTACAGGGTCATTAAGTGCG------TTTAA----AAAAGAACAAATGGTAATGTTT----TACAT--ATCAAACTGGAAGTCTGGACGAGGAGAGTTCAGCTGGGAGAAGGGA-GGATTTGGGCGACTTGCGTGTTGGCATCCCAACACAATTATCACTAGTTACTTT
gi|18                         :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       GGGCGACTTGTGTGTTGGCTTTCCAACACAATTATCA
gi|2                          :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       ggAGTAGAACGTTTCAGC---GGACTGT-ACGGGTTTCATTAAGTGCAAAAATGA-AAAGTCCTC-GAAGGGGTAATCTTGTGACAGCTATCAAAT-GAAAAAGGTCTTGACGAGTAGAGTTCAGCCCGGTGGTGTTACAGGGTCATTAAGCGCATTTT--TTTTT----AATTGAACAAAGGGTATCGTGT----TACAT--ATCATACTGAAAGTCTGGAC-----GAGTTCAGCTGGGGGGT-GGG-GGATTTGGGCGACTTTTGTGTTGGTATCCCAACACAATTATCACTAGTTTGTTT
gi|3                          :                                                                                                                                                                                                                                                                                               gtgcaccgttgcgtgggtggtaaGAAAAACACAATGACAAAGGGAGTATCG-GTGAC-TATCAAATTGAT-GTCTCCATAAGTAGCAGTTCATCCAAGGGGGGGGGGGGGGGCTGGTATGTTATCAAGCTGCAAAAAATTTACAAATGACCGAAAGCGGAGCAATGTGACATTATCCAAATTGAA-GTCTTTACGAGTAGAGTATTACAGCCAGCGGCTGGTAATGGTCAGCTTGCGTGCAAAAtgtttttatcatatttc
gi|4                          :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      aaGGGGTGTTACAGGGTCATTAAGTGCAATTTGTTTTTTCAAAAATTGAACAAAGGGTATCGTGTGACATACATGTATCAAACTGAAAGTCTGGATGAGGAGAGTTCAGCCGGGGGGGGGGGGGGATTTGGGCGACTTGTGTGTTGGCATCCCAACACAATTATCACTAGTTTCTTT
gi|5                          :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         GACA--TATCAAATTGAA---GGTCTTGATGAGTAAAGTTCAGCCCAGGGGTGTTACAGGGTAATTAAATGCAATTTTATCTTT----AATTGAACAATTGGTAttatgttcgtgctaatttc
gi|8                          :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                             GGG-GAATTTGGGCGACTTGTGTGTTGGCATCCCAACACAATTATCACTAGTTACTT

Unaligned ( gi|6 ): TTTTTCAATCATTGTTCAGCGTGCAGTCAACATGCGTTCAGCGTGCGGTCACCGTGTGCGTGTGGTAAAGTTGAATGTTTCAGGGACTGTAA
Unaligned ( gi|7 ): CATCATCACCGTTCACCAAATTATTGTTTGCTCTGCATGCGGGTCACCGTGCGTGTGTGTAAAGTAGAACGTTTCAGGGACTGTATCA
Unaligned ( gi|9 ): CATTATTCATTGATTGTTCAGCTGCAGTCACCGTGCGTGTGGTAAAGTAGAACATTTCAGGGACTGTA
Unaligned ( gi|10 ): ATGCGGTTCTATCATTGCGTGTGCGTAAAGTAGAACGAGTAGTTTCAGCGACTGCTACCA
Unaligned ( gi|11 ): GTGCCGGTCACCTGTGCGTGTGCGTAAAGTAGAGAGCGTTTTCAGGCTTACTATGC
Unaligned ( gi|12 ): GTCACCGGCTTCTGCGTGCGGTCCGTGCGTGTGTATGAACGTTTCAGGGACTGTA
Unaligned ( gi|13 ): CTGCGTGCGTCATCCGATGGCGTAGGGGTAAAGTAGAACGTTCAGGGACTGATAT
Unaligned ( gi|14 ): GCATGCGGTCACCGTGCGTGTGGTAAAGGTAGAACGTTTCAGGGACTGTATC
Unaligned ( gi|15 ): TGCGGGTCCCCGTGCGTGGTCGGTAAAGGTAGAACGTTTCAGGGAACTGTC
Unaligned ( gi|16 ): TGTATGCGTTCACTGTTCAAGTGGGAACGAAGAACGTTTCAGGGACTGTAT
Unaligned ( gi|17 ): CAGCGTGCGGTCACCATTCGTTCTGCATGCGATCACCGTGTGTG
Unaligned ( gi|19 ): GTGGGTAAAGGTAGAACGTTTCAGGGACTGTATATATA
Unaligned ( gi|20 ): TGTAAAGTAGACCGTTTCAGGGACTGTACCAAGC
Unaligned ( gi|21 ): GCGTGTGGTAAAGTAGAACGTTTCAGGGATTGCA

lowQualScore                  :                                                                                                                                                                                                                                                                                                                            222           11      1     1           11              1                    4444444444444         1   11        1             1     1        1   1         1                 2222     22222    2222   2222                                                                         222      222       1     11           1       1         1   11              111            222                                                    222222     2222                      2222     11                                              1                                                      
lowQualScore                  :                                                                                                                                                                                                                                                                                                                            000      1    88      5     5           66 1            5      1 22      1   7777777777777         5   88        5             5 1 1 5        5   5         5 1   1         1 5555     55555    4444   3333                                                                         000      000  22   5     66           5       5         5   77   1     1    999        7   333         6               0                          888888     1111           1          8888     88                    6             0      77   0                                                 1    
lowQualScore                  :                                                                                                                                                                                                                                                                                                                            ...      .    ..      .     .           .. .            .      . ..      .   .............         .   ..        .             . . . .        .   .         . .   .         . ....     .....    ....   ....                                                                         ...      ...  ..   .     ..           .       .         .   ..   .     .    ...        .   ...         .               .                          ......     ....           .          ....     ..                    .             .      ..   .                                                 .    
lowQualScore                  :                                                                                                                                                                                                                                                                                                                            555      0    00      5     5           00 0            0      0 00      0   0000000000000         0   55        0             0 0 0 5        5   0         0 0   0         0 0000     55555    5555   0000                                                                         555      000  00   5     55           5       0         0   55   0     0    000        3   333         7               7                          222222     2222           0          3333     33                    7             7      77   0                                                 0    
consensus                     : TCAGCCCAGGGGGTGTTCTAGGTCATTAAGTGCTAGATAAAGAACATTGACCGAAGAGTATCGTGTAACATATCAAATTGAACGTCTCGACGAATAGAGTGCAAAATTTAAAAAAATGGCCGAAATTGATGGGTTCAGTTCCGGGGGTGTTCAGGGGGTCATTATGTGAAATAAAAAATTGACCCAAGGGTGTCGTGTGACATATCAAATTGAAGGTCTCCATGAGTAGAGTTCAGCCTGGGGTGTTCCAGGGTCATTAAGTGAACAAAGTTCAGTCCCGGGGGTGTTCTAGGTCATTAAGTGCAAAATGAAAAACACAATGACNGAGGGAGTATCGTGTGACACATCAAATTGANCGNCTCCACGAGTAGCAGTTCANCNNAGGGGGNGGGGGGGGGCTGGTATGTCATCGAGCTGCAAAAAATTTACAAATGACCGAAGGCGNANCAATGTGACATTATCCAAATTGAAGGNCTTNACGAGTGGANTATTACAGCCAGCGGCCGGTAATGGTCAGCTTGCGTGCAAAATTAAAACGTTCTCCGAAGGGTATCTTGTGACATATCAAATTGAAGGTCTTGACGAGTAGAGCGTTTCAGCCCGGGNNTGTTACGGGNTTCATTAAGTGCAAAAATGAGAAAGTCCTCCGAAGGGGTNATCTTNTGACG--TATCAAATTGAA---GGTCTTGACGAGTAGAGTTCAGCCCGGGGGTGTTACAGGGTCATTAAGTGCAATTT--TTTTT----AATTGAACAAANGGTATCGTGT----TACAT--ATCAAACTGAAAGTCTGGACGAGGAGAGTTCAGCCGGGGGGNGGGG-GGATTTGGGCGACTTGTGTGTTGGCATCCCAACACAATTATCACTAGTTNCTTT
Reference ( family-1791 )     : TCAGCCCAGGGGGTGTTCTAGGTCATTAAGTGCTAGATAAAGAACATTGACCGAAGAGTATCGTGTAACATATCAAATTGAACGTCTCGACGAATAGAGTGCAAAATTTAAAAAAATGGCCGAAATTGATGGGTTCAGTTCCGGGGGTGTTCAGGGGGTCATTATGTGAAATAAAAAATTGACCCAAGGGTGTCGTGTGACATATCAAATTGAAGGTCTCCATGAGTAGAGTTCAGCCTGGGGTGTTCCAGGGTCATTAAGTGAACAAAGTTCAGTCCCGGGGGTGTTCTAGGTCATTAAGTGCAAAATGAAAAACACAATGACNGAGGGAGTATCGTGTGACACATCAAATTGANCGNCTCCACGAGTAGCAGTTCANCNNAGGGGGNGGGGGGGGGCTGGTATGTCATCGAGCTGCAAAAAATTTACAAATGACCGAAGGCGNANCAATGTGACATTATCCAAATTGAAGGNCTTNACGAGTGGANTATTACAGCCAGCGGCCGGTAATGGTCAGCTTGCGTGCAAAATTAAAACGTTCTCCGAAGGGTATCTTGTGACATATCAAATTGAAGGTCTTGACGAGTAGAGCGTTTCAGCCCGGGNNTGTTACGGGNTTCATTAAGTGCAAAAATGAGAAAGTCCTCCGAAGGGGTNATCTTNTGACG--TATCAAATTGAA---GGTCTTGACGAGTAGAGTTCAGCCCGGGGGTGTTACAGGGTCATTAAGTGCAATTT--TTTTT----AATTGAACAAANGGTATCGTGT----TACAT--ATCAAACTGAAAGTCTGGACGAGGAGAGTTCAGCCGGGGGGNGGGG-GGATTTGGGCGACTTGTGTGTTGGCATCCCAACACAATTATCACTAGTTNCTTT
gi|1                          : TCAGCCCAGGGGGTGTTCTAGGTCATTAAGTGCTAGATAAAGAACATTGACCGAAGAGTATCGTGTAACATATCAAATTGAACGTCTCGACGAATAGAGTGCAAAATTTAAAAAAATGGCCGAAATTGATGGGTTCAGTTCCGGGGGTGTTCAGGGGGTCATTATGTGAAATAAAAAATTGACCCAAGGGTGTCGTGTGACATATCAAATTGAAGGTCTCCATGAGTAGAGTTCAGCCTGGGGTGTTCCAGGGTCATTAAGTGAACAAAGTTCAGTCCCGGGGGTGTTCTAGGTCATTAAGTGCAAAATAAAAAA---AATGACTGAAG--GTATCGTGTGACACATCAAATTGAACGGCTCTACGAGTAG-AGTTCAGCATAGAGGGTGGG-------------GTCATTGAG-TGC--AAAATTTA-AAATGACCGAAGG-GTATC-ATGTGACA-TAT-TAAATTGAAGGACTTGACAAGTGGACT-T--CAGCC-----CCGG----GGT--G-TTATGTGCAAAATTAAAACGTTCTCCGAAGGGTATCTTGTGACATATCAAATTGAAGGTCTTGACGAGTAGAG---TTCAGCCCGGGTGTGTTACGGGG-TCATTAAGTGC-AAAATGAGAAAGTCCTCCGAA--GGTTATCTTTTGACG--TATCAAATTGAA---GGTCTTGAC-----GAGTTCAGCCCAGGGGTGTTACAGGGTCATTAAGTGCG------TTTAA----AAAAGAACAAATGGTAATGTTT----TACAT--ATCAAACTGGAAGTCTGGACGAGGAGAGTTCAGCTGGGAGAAGGGA-GGATTTGGGCGACTTGCGTGTTGGCATCCCAACACAATTATCACTAGTTACTTT
gi|18                         :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       GGGCGACTTGTGTGTTGGCTTTCCAACACAATTATCA
gi|2                          :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       ggAGTAGAACGTTTCAGC---GGACTGT-ACGGGTTTCATTAAGTGCAAAAATGA-AAAGTCCTC-GAAGGGGTAATCTTGTGACAGCTATCAAAT-GAAAAAGGTCTTGACGAGTAGAGTTCAGCCCGGTGGTGTTACAGGGTCATTAAGCGCATTTT--TTTTT----AATTGAACAAAGGGTATCGTGT----TACAT--ATCATACTGAAAGTCTGGAC-----GAGTTCAGCTGGGGGGT-GGG-GGATTTGGGCGACTTTTGTGTTGGTATCCCAACACAATTATCACTAGTTTGTTT
gi|3                          :                                                                                                                                                                                                                                                                                               gtgcaccgttgcgtgggtggtaaGAAAAACACAATGACAAAGGGAGTATCG-GTGAC-TATCAAATTGAT-GTCTCCATAAGTAGCAGTTCATCCAAGGGGGGGGGGGGGGGCTGGTATGTTATCAAGCTGCAAAAAATTTACAAATGACCGAAAGCGGAGCAATGTGACATTATCCAAATTGAA-GTCTTTACGAGTAGAGTATTACAGCCAGCGGCTGGTAATGGTCAGCTTGCGTGCAAAAtgtttttatcatatttc
gi|4                          :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      aaGGGGTGTTACAGGGTCATTAAGTGCAATTTGTTTTTTCAAAAATTGAACAAAGGGTATCGTGTGACATACATGTATCAAACTGAAAGTCTGGATGAGGAGAGTTCAGCCGGGGGGGGGGGGGGATTTGGGCGACTTGTGTGTTGGCATCCCAACACAATTATCACTAGTTTCTTT
gi|5                          :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         GACA--TATCAAATTGAA---GGTCTTGATGAGTAAAGTTCAGCCCAGGGGTGTTACAGGGTAATTAAATGCAATTTTATCTTT----AATTGAACAATTGGTAttatgttcgtgctaatttc
gi|8                          :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                             GGG-GAATTTGGGCGACTTGTGTGTTGGCATCCCAACACAATTATCACTAGTTACTT


blockSeqs                     :                                                                                                                                                                                                                                                                                                                            CAC      A    GA      .     .           T  T            C      T CA      G   GGGGGGCTGGTAT         C   AA        C             C G G A        T   C         . T   T         G ATTA     AGCGG    TAAT   CAGC                                                                         CGT      .    AC   .     TT           A       .         .   GG   A     G    AGC        T   AAA         G                                          ATTTGT     CAAA           G          GACA     GT                    G                    GG   G                                                 T
blockSeqs                     :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            A          .   .           G                                          ATTTTA     .              G          .        .                     .                    T    .                                                 T
blockSeqs                     :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  TTTT       .              T                                                                   .                                                 A


blockSeqCons                  : 
originalCons                  : TCAGCCCAGGGGGTGTTCTAGGTCATTAAGTGCTAGATAAAGAACATTGACCGAAGAGTATCGTGTAACATATCAAATTGAACGTCTCGACGAATAGAGTGCAAAATTTAAAAAAATGGCCGAAATTGATGGGTTCAGTTCCGGGGGTGTTCAGGGGGTCATTATGTGAAATAAAAAATTGACCCAAGGGTGTCGTGTGACATATCAAATTGAAGGTCTCCATGAGTAGAGTTCAGCCTGGGGTGTTCCAGGGTCATTAAGTGAACAAAGTTCAGTCCCGGGGGTGTTCTAGGTCATTAAGTGCAAAATGAAAAACACAATGACNGAGGGAGTATCGTGTGACACATCAAATTGANCGNCTCCACGAGTAGCAGTTCANCNNAGGGGGNGGGGGGGGGCTGGTATGTCATCGAGCTGCAAAAAATTTACAAATGACCGAAGGCGNANCAATGTGACATTATCCAAATTGAAGGNCTTNACGAGTGGANTATTACAGCCAGCGGCCGGTAATGGTCAGCTTGCGTGCAAAATTAAAACGTTCTCCGAAGGGTATCTTGTGACATATCAAATTGAAGGTCTTGACGAGTAGAGCGTTTCAGCCCGGGNNTGTTACGGGNTTCATTAAGTGCAAAAATGAGAAAGTCCTCCGAAGGGGTNATCTTNTGACG--TATCAAATTGAA---GGTCTTGACGAGTAGAGTTCAGCCCGGGGGTGTTACAGGGTCATTAAGTGCAATTT--TTTTT----AATTGAACAAANGGTATCGTGT----TACAT--ATCAAACTGAAAGTCTGGACGAGGAGAGTTCAGCCGGGGGGNGGGG-GGATTTGGGCGACTTGTGTGTTGGCATCCCAACACAATTATCACTAGTTNCTTT
finalCons                     : TCAGCCCAGGGGGTGTTCTAGGTCATTAAGTGCTAGATAAAGAACATTGACCGAAGAGTATCGTGTAACATATCAAATTGAACGTCTCGACGAATAGAGTGCAAAATTTAAAAAAATGGCCGAAATTGATGGGTTCAGTTCCGGGGGTGTTCAGGGGGTCATTATGTGAAATAAAAAATTGACCCAAGGGTGTCGTGTGACATATCAAATTGAAGGTCTCCATGAGTAGAGTTCAGCCTGGGGTGTTCCAGGGTCATTAAGTGAACAAAGTTCAGTCCCGGGGGTGTTCTAGGTCATTAAGTGCAAAATGAAAAACACAATGACNGAGGGAGTATCGTGTGACACATCAAATTGANCGNCTCCACGAGTAGCAGTTCANCNNAGGGGGNGGGGGGGGGCTGGTATGTCATCGAGCTGCAAAAAATTTACAAATGACCGAAGGCGNANCAATGTGACATTATCCAAATTGAAGGNCTTNACGAGTGGANTATTACAGCCAGCGGCCGGTAATGGTCAGCTTGCGTGCAAAATTAAAACGTTCTCCGAAGGGTATCTTGTGACATATCAAATTGAAGGTCTTGACGAGTAGAGCGTTTCAGCCCGGGNNTGTTACGGGNTTCATTAAGTGCAAAAATGAGAAAGTCCTCCGAAGGGGTNATCTTNTGACG--TATCAAATTGAA---GGTCTTGACGAGTAGAGTTCAGCCCGGGGGTGTTACAGGGTCATTAAGTGCAATTT--TTTTT----AATTGAACAAANGGTATCGTGT----TACAT--ATCAAACTGAAAGTCTGGACGAGGAGAGTTCAGCCGGGGGGNGGGG-GGATTTGGGCGACTTGTGTGTTGGCATCCCAACACAATTATCACTAGTTNCTTT

Unaligned ( gi|6 ): TTTTTCAATCATTGTTCAGCGTGCAGTCAACATGCGTTCAGCGTGCGGTCACCGTGTGCGTGTGGTAAAGTTGAATGTTTCAGGGACTGTAA
Unaligned ( gi|7 ): CATCATCACCGTTCACCAAATTATTGTTTGCTCTGCATGCGGGTCACCGTGCGTGTGTGTAAAGTAGAACGTTTCAGGGACTGTATCA
Unaligned ( gi|9 ): CATTATTCATTGATTGTTCAGCTGCAGTCACCGTGCGTGTGGTAAAGTAGAACATTTCAGGGACTGTA
Unaligned ( gi|10 ): ATGCGGTTCTATCATTGCGTGTGCGTAAAGTAGAACGAGTAGTTTCAGCGACTGCTACCA
Unaligned ( gi|11 ): GTGCCGGTCACCTGTGCGTGTGCGTAAAGTAGAGAGCGTTTTCAGGCTTACTATGC
Unaligned ( gi|12 ): GTCACCGGCTTCTGCGTGCGGTCCGTGCGTGTGTATGAACGTTTCAGGGACTGTA
Unaligned ( gi|13 ): CTGCGTGCGTCATCCGATGGCGTAGGGGTAAAGTAGAACGTTCAGGGACTGATAT
Unaligned ( gi|14 ): GCATGCGGTCACCGTGCGTGTGGTAAAGGTAGAACGTTTCAGGGACTGTATC
Unaligned ( gi|15 ): TGCGGGTCCCCGTGCGTGGTCGGTAAAGGTAGAACGTTTCAGGGAACTGTC
Unaligned ( gi|16 ): TGTATGCGTTCACTGTTCAAGTGGGAACGAAGAACGTTTCAGGGACTGTAT
Unaligned ( gi|17 ): CAGCGTGCGGTCACCATTCGTTCTGCATGCGATCACCGTGTGTG
Unaligned ( gi|19 ): GTGGGTAAAGGTAGAACGTTTCAGGGACTGTATATATA
Unaligned ( gi|20 ): TGTAAAGTAGACCGTTTCAGGGACTGTACCAAGC
Unaligned ( gi|21 ): GCGTGTGGTAAAGTAGAACGTTTCAGGGATTGCA

lowQualScore                  :                                                                                                                                                                                                                                                                                                                            222           11      1     1           11              1                    4444444444444         1   11        1             1     1        1   1         1                 2222     22222    2222   2222                                                                         222      222       1     11           1       1         1   11              111            222                                                    222222     2222                      2222     11                                              1                                                      
lowQualScore                  :                                                                                                                                                                                                                                                                                                                            000      1    88      5     5           66 1            5      1 22      1   7777777777777         5   88        5             5 1 1 5        5   5         5 1   1         1 5555     55555    4444   3333                                                                         000      000  22   5     66           5       5         5   77   1     1    999        7   333         6               0                          888888     1111           1          8888     88                    6             0      77   0                                                 1    
lowQualScore                  :                                                                                                                                                                                                                                                                                                                            ...      .    ..      .     .           .. .            .      . ..      .   .............         .   ..        .             . . . .        .   .         . .   .         . ....     .....    ....   ....                                                                         ...      ...  ..   .     ..           .       .         .   ..   .     .    ...        .   ...         .               .                          ......     ....           .          ....     ..                    .             .      ..   .                                                 .    
lowQualScore                  :                                                                                                                                                                                                                                                                                                                            555      0    00      5     5           00 0            0      0 00      0   0000000000000         0   55        0             0 0 0 5        5   0         0 0   0         0 0000     55555    5555   0000                                                                         555      000  00   5     55           5       0         0   55   0     0    000        3   333         7               7                          222222     2222           0          3333     33                    7             7      77   0                                                 0    
consensus                     : TCAGCCCAGGGGGTGTTCTAGGTCATTAAGTGCTAGATAAAGAACATTGACCGAAGAGTATCGTGTAACATATCAAATTGAACGTCTCGACGAATAGAGTGCAAAATTTAAAAAAATGGCCGAAATTGATGGGTTCAGTTCCGGGGGTGTTCAGGGGGTCATTATGTGAAATAAAAAATTGACCCAAGGGTGTCGTGTGACATATCAAATTGAAGGTCTCCATGAGTAGAGTTCAGCCTGGGGTGTTCCAGGGTCATTAAGTGAACAAAGTTCAGTCCCGGGGGTGTTCTAGGTCATTAAGTGCAAAATGAAAAACACAATGACNGAGGGAGTATCGTGTGACACATCAAATTGANCGNCTCCACGAGTAGCAGTTCANCNNAGGGGGNGGGGGGGGGCTGGTATGTCATCGAGCTGCAAAAAATTTACAAATGACCGAAGGCGNANCAATGTGACATTATCCAAATTGAAGGNCTTNACGAGTGGANTATTACAGCCAGCGGCCGGTAATGGTCAGCTTGCGTGCAAAATTAAAACGTTCTCCGAAGGGTATCTTGTGACATATCAAATTGAAGGTCTTGACGAGTAGAGCGTTTCAGCCCGGGNNTGTTACGGGNTTCATTAAGTGCAAAAATGAGAAAGTCCTCCGAAGGGGTNATCTTNTGACG--TATCAAATTGAA---GGTCTTGACGAGTAGAGTTCAGCCCGGGGGTGTTACAGGGTCATTAAGTGCAATTT--TTTTT----AATTGAACAAANGGTATCGTGT----TACAT--ATCAAACTGAAAGTCTGGACGAGGAGAGTTCAGCCGGGGGGNGGGG-GGATTTGGGCGACTTGTGTGTTGGCATCCCAACACAATTATCACTAGTTNCTTT
Reference ( family-1791 )     : TCAGCCCAGGGGGTGTTCTAGGTCATTAAGTGCTAGATAAAGAACATTGACCGAAGAGTATCGTGTAACATATCAAATTGAACGTCTCGACGAATAGAGTGCAAAATTTAAAAAAATGGCCGAAATTGATGGGTTCAGTTCCGGGGGTGTTCAGGGGGTCATTATGTGAAATAAAAAATTGACCCAAGGGTGTCGTGTGACATATCAAATTGAAGGTCTCCATGAGTAGAGTTCAGCCTGGGGTGTTCCAGGGTCATTAAGTGAACAAAGTTCAGTCCCGGGGGTGTTCTAGGTCATTAAGTGCAAAATGAAAAACACAATGACNGAGGGAGTATCGTGTGACACATCAAATTGANCGNCTCCACGAGTAGCAGTTCANCNNAGGGGGNGGGGGGGGGCTGGTATGTCATCGAGCTGCAAAAAATTTACAAATGACCGAAGGCGNANCAATGTGACATTATCCAAATTGAAGGNCTTNACGAGTGGANTATTACAGCCAGCGGCCGGTAATGGTCAGCTTGCGTGCAAAATTAAAACGTTCTCCGAAGGGTATCTTGTGACATATCAAATTGAAGGTCTTGACGAGTAGAGCGTTTCAGCCCGGGNNTGTTACGGGNTTCATTAAGTGCAAAAATGAGAAAGTCCTCCGAAGGGGTNATCTTNTGACG--TATCAAATTGAA---GGTCTTGACGAGTAGAGTTCAGCCCGGGGGTGTTACAGGGTCATTAAGTGCAATTT--TTTTT----AATTGAACAAANGGTATCGTGT----TACAT--ATCAAACTGAAAGTCTGGACGAGGAGAGTTCAGCCGGGGGGNGGGG-GGATTTGGGCGACTTGTGTGTTGGCATCCCAACACAATTATCACTAGTTNCTTT
gi|1                          : TCAGCCCAGGGGGTGTTCTAGGTCATTAAGTGCTAGATAAAGAACATTGACCGAAGAGTATCGTGTAACATATCAAATTGAACGTCTCGACGAATAGAGTGCAAAATTTAAAAAAATGGCCGAAATTGATGGGTTCAGTTCCGGGGGTGTTCAGGGGGTCATTATGTGAAATAAAAAATTGACCCAAGGGTGTCGTGTGACATATCAAATTGAAGGTCTCCATGAGTAGAGTTCAGCCTGGGGTGTTCCAGGGTCATTAAGTGAACAAAGTTCAGTCCCGGGGGTGTTCTAGGTCATTAAGTGCAAAATAAAAAA---AATGACTGAAG--GTATCGTGTGACACATCAAATTGAACGGCTCTACGAGTAG-AGTTCAGCATAGAGGGTGGG-------------GTCATTGAG-TGC--AAAATTTA-AAATGACCGAAGG-GTATC-ATGTGACA-TAT-TAAATTGAAGGACTTGACAAGTGGACT-T--CAGCC-----CCGG----GGT--G-TTATGTGCAAAATTAAAACGTTCTCCGAAGGGTATCTTGTGACATATCAAATTGAAGGTCTTGACGAGTAGAG---TTCAGCCCGGGTGTGTTACGGGG-TCATTAAGTGC-AAAATGAGAAAGTCCTCCGAA--GGTTATCTTTTGACG--TATCAAATTGAA---GGTCTTGAC-----GAGTTCAGCCCAGGGGTGTTACAGGGTCATTAAGTGCG------TTTAA----AAAAGAACAAATGGTAATGTTT----TACAT--ATCAAACTGGAAGTCTGGACGAGGAGAGTTCAGCTGGGAGAAGGGA-GGATTTGGGCGACTTGCGTGTTGGCATCCCAACACAATTATCACTAGTTACTTT
gi|18                         :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       GGGCGACTTGTGTGTTGGCTTTCCAACACAATTATCA
gi|2                          :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       ggAGTAGAACGTTTCAGC---GGACTGT-ACGGGTTTCATTAAGTGCAAAAATGA-AAAGTCCTC-GAAGGGGTAATCTTGTGACAGCTATCAAAT-GAAAAAGGTCTTGACGAGTAGAGTTCAGCCCGGTGGTGTTACAGGGTCATTAAGCGCATTTT--TTTTT----AATTGAACAAAGGGTATCGTGT----TACAT--ATCATACTGAAAGTCTGGAC-----GAGTTCAGCTGGGGGGT-GGG-GGATTTGGGCGACTTTTGTGTTGGTATCCCAACACAATTATCACTAGTTTGTTT
gi|3                          :                                                                                                                                                                                                                                                                                               gtgcaccgttgcgtgggtggtaaGAAAAACACAATGACAAAGGGAGTATCG-GTGAC-TATCAAATTGAT-GTCTCCATAAGTAGCAGTTCATCCAAGGGGGGGGGGGGGGGCTGGTATGTTATCAAGCTGCAAAAAATTTACAAATGACCGAAAGCGGAGCAATGTGACATTATCCAAATTGAA-GTCTTTACGAGTAGAGTATTACAGCCAGCGGCTGGTAATGGTCAGCTTGCGTGCAAAAtgtttttatcatatttc
gi|4                          :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      aaGGGGTGTTACAGGGTCATTAAGTGCAATTTGTTTTTTCAAAAATTGAACAAAGGGTATCGTGTGACATACATGTATCAAACTGAAAGTCTGGATGAGGAGAGTTCAGCCGGGGGGGGGGGGGGATTTGGGCGACTTGTGTGTTGGCATCCCAACACAATTATCACTAGTTTCTTT
gi|5                          :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         GACA--TATCAAATTGAA---GGTCTTGATGAGTAAAGTTCAGCCCAGGGGTGTTACAGGGTAATTAAATGCAATTTTATCTTT----AATTGAACAATTGGTAttatgttcgtgctaatttc
gi|8                          :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                             GGG-GAATTTGGGCGACTTGTGTGTTGGCATCCCAACACAATTATCACTAGTTACTT

Unaligned ( gi|6 ): TTTTTCAATCATTGTTCAGCGTGCAGTCAACATGCGTTCAGCGTGCGGTCACCGTGTGCGTGTGGTAAAGTTGAATGTTTCAGGGACTGTAA
Unaligned ( gi|7 ): CATCATCACCGTTCACCAAATTATTGTTTGCTCTGCATGCGGGTCACCGTGCGTGTGTGTAAAGTAGAACGTTTCAGGGACTGTATCA
Unaligned ( gi|9 ): CATTATTCATTGATTGTTCAGCTGCAGTCACCGTGCGTGTGGTAAAGTAGAACATTTCAGGGACTGTA
Unaligned ( gi|10 ): ATGCGGTTCTATCATTGCGTGTGCGTAAAGTAGAACGAGTAGTTTCAGCGACTGCTACCA
Unaligned ( gi|11 ): GTGCCGGTCACCTGTGCGTGTGCGTAAAGTAGAGAGCGTTTTCAGGCTTACTATGC
Unaligned ( gi|12 ): GTCACCGGCTTCTGCGTGCGGTCCGTGCGTGTGTATGAACGTTTCAGGGACTGTA
Unaligned ( gi|13 ): CTGCGTGCGTCATCCGATGGCGTAGGGGTAAAGTAGAACGTTCAGGGACTGATAT
Unaligned ( gi|14 ): GCATGCGGTCACCGTGCGTGTGGTAAAGGTAGAACGTTTCAGGGACTGTATC
Unaligned ( gi|15 ): TGCGGGTCCCCGTGCGTGGTCGGTAAAGGTAGAACGTTTCAGGGAACTGTC
Unaligned ( gi|16 ): TGTATGCGTTCACTGTTCAAGTGGGAACGAAGAACGTTTCAGGGACTGTAT
Unaligned ( gi|17 ): CAGCGTGCGGTCACCATTCGTTCTGCATGCGATCACCGTGTGTG
Unaligned ( gi|19 ): GTGGGTAAAGGTAGAACGTTTCAGGGACTGTATATATA
Unaligned ( gi|20 ): TGTAAAGTAGACCGTTTCAGGGACTGTACCAAGC
Unaligned ( gi|21 ): GCGTGTGGTAAAGTAGAACGTTTCAGGGATTGCA