lowQualScore : 11111111111111111111111111111
lowQualScore : 11 111 333 1111111 222222222 11111111111111111111111111111 1 1111111 111111 11 88888888888888888888888888888888888888888888 44444444444444444 111111 1 11 1 22222222222222222222 66666666666 333333 3333 111 222 33333333333333 1 4444444444
lowQualScore : 66 3 222 888 000 8 8 1111111 666666666 6 33333333333333333333333333333 777 55 1 8 555 55 555 4444444 777 888888 777 00 2 22222222222222222222222222222222222222222222 999 66 2 5 66 00000000000000000 444444 4 00 5 5 22222222222222222222 6 33333333333 99 1 5 000000 6 8888 000 000 77777777777777 55 0 2 6 5 5 5 0000000000 2
lowQualScore : .. . ... ... ... . . ....... ......... . ............................. ... .. . . ... .. ... ....... ... ...... ... .. . ............................................ ... .. . . .. ................. ...... . .. . . .................... . ........... .. . . ...... . .... ... ... .............. .. . . . . . . .......... .
lowQualScore : 00 3 999 888 555 9 4 9999999 333333333 2 44444444444444444444444444444 888 88 9 9 777 11 999 4444444 888 999999 888 66 0 11111111111111111111111111111111111111111111 444 99 0 0 99 11111111111111111 444444 5 11 4 0 00000000000000000000 7 55555555555 66 7 7 777777 6 4444 000 000 44444444444444 55 9 4 9 0 0 0 3333333333 2
consensus : AGGCCAGACNAAGTCATTTCTT-TGTT---AAGCGTCAGCG-GGCGGTTAGGTT---T-T-CG--A-TNCCCTGATGGCAAAA-A--AA-AAA-ACAAA--AA---A--CAGTA---TATTTCCGGAATTTTCCT-TCCG-TCACTGTTCGTTAT-------ATTA---TTCAT------TG---CATCCAAATCACT-AAGAAGCTNTAA---ATCG-CCG----T-------TTTACN-CC------NACTGT--GTCA--AATTTAG-T--GCAC--CAGACATGCA--TGTT------TTGGATAT-TTGATCCTCA-T-CGGTG-GTA-CTT-AGGN-T-GAAATAAAAAAATAA-A-A-GTG-GCGTCA-CCTACAATGAN--TTGTACAGCTCGTATTTTCGTTTG---TTTTTT-T-CTGATAG----G---------TAATTA--GGTTTTGTTAGTCTGACCTGACGCTTAACAAAGAA-A-AAAAA-----C-AGGTATGGCCT
Reference ( gi|1 ) : AGGCCAGAGCAGGTCATCTCTT-TCTT---AAGAATCAGCG-GGCGGTGAGGTT---T-T-CG--G-TTCCATGATGGCAAAACAAAAACAAA-ACAAAA-AACCCA--CAGTA---TATTTCCGGAATTTTCCT-TCCG-TCATTGTTCGTTAT-------ATTA---TTCAT------TG---CATCCAAATCACC-AAGAAGCTTTAT---ATTG-CCGA---TG------TTTACT-CC------TACTGT--GTCA--AATTTAG-T--GCAC--AAGACATGCA--TGTT------TTGGGTAT-CTGATCCACA-T-AGGTG-ATA-CTT-AGGG-T-GAAATAAAAAAACAAAACA-GTG-ACGTCA-CCTACAACGTT--TTGTACAGCTCGTATTTTTGAATG---TTTTTT-T-CTGATAG----T---------TAATTA--GGTTTTGTTAATCCGACCTGAGGCTTAACAAAGAA-A-AAAAA----GC-AGGTATGGCTTA
gi|9 : AGGCCAGACCAAATCACTTCGT-TGTT---AAGCGTCAGCG-GGTGGTTAGGTT---T-C-CG--A-TGCCCTGATGGCAAAAAAAAAAAAAAGGCGAAA-AA---A---GGTA---TATTTCTGGACATTTCCG-CCTG-TCGTTGTTCGTTAT-------GTTA---TTCATTGCGCATG---CATCTAAATCACC-ATGAAGCTGTAA---ATCG-CCG---------------------------TATTGT--GTAA--AATTTAG-T--G
gi|4 : ttAGGCTAGAACAAATCAACACTT-T--T---AAGTGTGAGTG-AGCGGTTAGGAT---C-T-CGATG-TTC--TGATGGCA---------------CAAAA-AA--------GTA---TATTTCCGGAATTTTCCA-TCCG-AGTTTGTTCGTTAT-------AGAA---TCCGT------TG---CACTCAAATCATG-AAAGGGCTATAA---AACG-CTG-------------TTACT-CTGACTAGTACTGT--GT------------T--GCAC--CATATCTGCA--TGTT------TTGGACAT-TTAATCCTCA-T-CAATA-ATA-TTTGAGAT-T-GAAATTAAAA--------A-GTG-GTGTCA-TCTACA
gi|11 : aAGGCCAGACAAAGTAATTTCTC-TGTTTTAAAGTGTCAGCG-GGTGGTAAGGTT---T-T-CG--A-TTCCTTGATttaaattgttgaca
gi|16 : aAGGCCAGACAAAGTCATTTCTT-TGTT---AAGCGTCAACG-GGCGGTGAGGTT---T-T-CG--A-TTCCCTGGTGGacagtatatttccggaattttccttccgccattgttcgttatactagtaatcatttattgcatccaaatcactaaga
gi|2 : ttGGCCAGGCCAAGTCATTTCTG-TGTT---AAGCGTCCGCG-GGCGGAGAGGTT---T------------------GGCAAAA----AATAAA-CCCAA----CCCAAACAGTA---TATTTCCGACATTTTCCT-TCAG-CCACTGTTCGTTAT-------ATTA---TTCAT------TG---CATCCAAATCACT-AAGAAGATATAG---ATCA-CC-ATTTTT------TTTACT-TC------CACTGT--GTCA--AATTTAG-T--GCAC--CAGGCATGCA--TGTT------TTGGATAT-CTGATCCTCG-T-AGGC---------------T-GAAATGATAAAA-AAGA-----G-GCGTCA-CCTACAATGAG--GTGTACAGCTCGTATTTTC--ATG---TTTTTT-TCCTGATAG----G---------TAATTA--GGTTTTGTTAGTCTGACCTGACGCTTTTCAAAGAA-A-GAAAAACCTAC-AGGTGTGGCT
gi|6 : GCCAGACAAGGTCATTTCTG-TGTT---AAG------CG-GGCGGCCGGGTTGGTTAT-CG--A-TTCC-CGATGACAAAACAA---CAAA-ACAAGTTAAC---------A---TATTTCC--AATGTATCT-TC---TC--TGCT-------------ATTATTGTTCAT------TATATTATTCATATCATC-GAAA----TCA----ATCG-CCT----TA------TTTATT-CG------TACTGTGGGTCA--AATTTAC-TTCGCAC--CAGA-ATGCG--TGTTGAATGCTTCGATATATTGATCTGCATT-AGGTGTATAGCTT-GGtact
gi|5 : CATCCCTTGTCTT---AG---TCAGTGTGATCGTTAGGTT---T-TTCG--AATGCCCTG-TGGCAAAAAACAAACAGT-ATAA-----------CAGTAGTTCATT-----AATTT--CTGTCCC-TCACTG------AT-------ATTA---TTTATAT----TG---CATC-AAATCATCTAAGAAGCTT-A----ATTG---AA---TAAGACTTTTTACAACC------GTCTGT--TCCATAAATTTAGGT--GGACCAGAGACAGGTA--TGTG------TTGG-TAT-TTGATTCTCA-T-CAGTG-GTA-CTT-AGGC-T-GAAATAAAAGA
gi|7 : TCCCTTGTCTT---AG---TCAGTGTGATCGTTAGGTT---T-TTCG--AATGCCCTG-TGGCAAAA---------A-ACAAAC-AGTATA--CA-TG---TATTTCCTTAATTT--CTGTCCC-TCACTGATCATTAT-------GTTA---ATAAT------TG---CATCCAAATCACT-AAGAAGCTTAATTGAATAGACC-----TT------TTTACA-CC------GACTGT--TCCA--AATTTAG-T--GGAC--CAGACATG----TG--------TTGGATAT-TTGATTCTCA-T-CAGTG-GT
gi|3 : GCG-GGCAGTTAAGTT---T-T-TG--A-TCCCCCGATGGCAAAA---------A-ACAAA----------CAGCA---TTTTTCCTAAATTTCCTG-TGCG-TCATTGATTGTTAT-------ATTA---TTAAT------TG---CATCCAAATTACT-AAGCAGCTTTAA---ATAG-CCAT---TC------ATTACA-CA------GACTGT--TTCA--CATTCAG-T--G------------------GTT------TTGGATAT-TTGATCCTCG-TCAG-----TA-C-----GG-TAGTATTAAATAAGTGGTACATATGTAC--CA-TCTGCAATGAA--TTGTACTGCTCGTATTTCTG--------TTTTT-C-CTGATAG----G---------TAATTA--GG-GTTGTTAGTCGGACCTGACGTTTAACAAAGAA-A-AAAA------C-AGGTAT
gi|8 : ttaggccacaccaaataatacctttggAAA-AAAAAA-AAACAA--CA-TA---TATTTCCGGAATTT-CCT----GATCA--GT--GTAGC-------ATTA---TTCAT------TG---CATCCAAG-AACTTAAGACGCTAAA----ATCG-CCA------------TTTACT-TC------T-CTA-----CA--AATT--G-T--G------------GCACCTATT------TTAG------TGA----CA-G-AGTTG-TTA-CTT-AGGC-T-GAAATAAAA---TAAAA-A-GTG-GCATCAACCTACAATGAG--TTGTACAGCTCGTACTTTaagc
gi|11 : aaA--CAGTA---TATTTCCGGAATTTTCCT-TCCG-CCATTGTTCGTTATACTAGTAATCA---TTTAT------TG---CATCCAAATCACT-AAGAc
gi|10 : aaggccagacaaagtaatttctctgttttaaagtgtcagcgggtggtaaggttttcgattccttgatGTT------TTAGATAG-TTG-TCCTCA-T-CAGTG-GCA-CTT-AAGGCT-GAAATAAAAAAA----A-A-GTT-GCGTCA-CCAACAATGAA--TTGTACATTTCGTATTTTCGTTTG---TTTGTC---CTGATAG----G---------TAAGTA--GGTTTTGCTAGTCTGACCTGACGCTTAATAAAGAA-ATAAGAA----
gi|13 : AACAAGTG-GCGTCA-CCTACAA--TTAATTGCACTGCTCGTATTTTCGTTTG---TGTTTC---CTGATAG----G---------TAATTA---------------TGACCTGATGCTTAACAAAGAA-A-AA----------AGGTATGACC
gi|15 : -GTG-GCACCA-CCTACAATGAA--TTGTAC---TCGTATTTTCGTTTG---TTTTTTGT-CT---------T---------T-CCTA----TTTTGCCAGTCTGACCTGATGTTTAACAAAG
gi|12 : GTT--TTGT----TTGGTTTTTTT---TG---TTTTTT-T-TTGGGGGGGGGTGGGGGGGAGTAATTA--GATTTTGTTAATCTGACCTGACGCTTAACAAAGAA-A-AAAA------CAAAGTATGACCta
gi|14 : --TTGTACAGCTCGTATTTTCGTTTGGGTTTTTTT-C-CTGATAG----G---------TAATTAGCGGTCATGTTAATCTGACCTG----TTAACAAGGAATA-AAAAA----AA-AGGTATGGCtaat
gi|19 : g-CTGGTAG----G---------TAATTG--GGTTTTGTCCATCTGACCTGACACTTAc
gi|17 : ---------TAATTA--GGATTTGTTAGTCTGATTTGACATTTAACAAAGAA-A-AA--------C-ACGCGTGGC
gi|18 : gAATAA--GGTTTTGTTAGTCTGACCTGATGCCCAACA---AA-A-AAAAC----CC-AGGTATGGCCgtttttattca
1 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|20 ): GCTTAGGCCAGACAAAGTCATTTCTT
Alignments
lowQualScore : 3333333333333333333333333 1111111 111111 1111111 2222222222 11111111 111111 2222 111 1111111 111111 1111111
lowQualScore : 1 4 1 777 1 8 0 8 8 2 4 9999999999999999999999999 8888 5 777 55 7 4 8 4 4 1 3333333 777777 4 4 8888888 44 4 8888888888 77 22 9999 66 4 66 66 0 44444444 222222 3 4 666 66 22 5 5 1 3 1 6666 66 5 1 0 66 888 666 3333333 000000 55 888 4 4444444
lowQualScore : . . . ... . . . . . . . ......................... .... . ... .. . . . . . . ....... ...... . . ....... .. . .......... .. .. .... .. . .. .. . ........ ...... . . ... .. .. . . . . . .... .. . . . .. ... ... ....... ...... .. ... . .......
lowQualScore : 0 0 1 888 9 0 8 0 0 4 7 2222222222222222222222222 5555 0 000 55 2 0 0 0 6 1 0000000 000000 0 0 1111111 66 4 1111111111 00 77 1111 11 4 11 99 1 00000000 888888 6 4 222 11 22 7 7 0 9 7 9999 99 0 0 5 88 888 444 0000000 555555 00 000 4 6666666
consensus : AGGCCAGACCAAGTCATTTCTT-TGTT---AAGCGTCAGCG-GGCGGTTAGGTTTT-CGA-TNCCCTGATGGCAAAA---AAA-AAAA-----CAAA---A-AAC----AGTA---TATTTCCG--GAATTTTC-CT-TCCG-TCATTGTTCGTTAT-------ATTATTCAT------TGCATCCAAATCA-CT-AAGAAGCT---N---TAAATC-G-CCG----T-T--TTACT-CCGACTGTG--TCA--AATTTAG-T--G-CACCAGA--CATGCATGTT------TTGGATAT-TTGATCCTCATC-GGT--GGTACTT-A-GGCTGAAATAAAANAA-AAAA--GTGGCGTCA-CCTACAATGAATTGTACAGCTCGTATTTTCGTTTG---TTTTTT-T-CTGA-------TAGG------TAATTA--GGTTTTGTTAGTCTGACCTGACGCTTAACAAAGA--AA-AAAA-----A-CAGGTATGGCCT
Reference ( family-1745 ) : AGGCCAGACNAAGTCATTTCTT-TGTT---AAGCGTCAGCG-GGCGGTTAGGTTTT-CGA-TNCCCTGATGGCAAAA---AAA-AAAA-----CAAA---A-AAC----AGTA---TATTTCCG--GAATTTTC-CT-TCCG-TCACTGTTCGTTAT-------ATTATTCAT------TGCATCCAAATCA-CT-AAGAAGCT---N---TAAATC-G-CCG----T-T--TTACN-CCNACTGTG--TCA--AATTTAG-T--G-CACCAGA--CATGCATGTT------TTGGATAT-TTGATCCTCATC-GGT--GGTACTT-A-GGNTGAAATAAAAAAATAAAA--GTGGCGTCA-CCTACAATGANTTGTACAGCTCGTATTTTCGTTTG---TTTTTT-T-CTGA-------TAGG------TAATTA--GGTTTTGTTAGTCTGACCTGACGCTTAACAAAGA--AA-AAAA-----A-CAGGTATGGCCT
gi|1 : AGGCCAGAGCAGGTCATCTCTT-TCTT---AAGAATCAGCG-GGCGGTGAGGTTTT-CGG-TTCCATGATGGCAAAACAAAAACAAAA-----CAAA---A-AACCCACAGTA---TATTTCCG--GAATTTTC-CT-TCCG-TCATTGTTCGTTAT-------ATTATTCAT------TGCATCCAAATCA-CC-AAGAAGCT---T---TATATT-G-CCGA---TGT--TTACT-CCTACTGTG--TCA--AATTTAG-T--G-CACAAGA--CATGCATGTT------TTGGGTAT-CTGATCCACATA-GGT--GATACTT-A-GGGTGAAATAAAAAAACAAAACAGTGACGTCA-CCTACAACGTTTTGTACAGCTCGTATTTTTGAATG---TTTTTT-T-CTGA-------TAGT------TAATTA--GGTTTTGTTAATCCGACCTGAGGCTTAACAAAGA--AA-AAAA-----AGCAGGTATGGCTT
gi|10 : GTT------TTAGATAG-TTG-TCCTCATC-AGT--GGCACTT-AAGGCTGAAATAAAAAAA---AA--GTTGCGTCA-CCAACAATGAATTGTACATTTCGTATTTTCGTTTG---TTTGTC---CTGA-------TAGG------TAAGTA--GGTTTTGCTAGTCTGACCTGACGCTTAATAAAGA--AATAAGA-----A-a
gi|11 : AGGCCAGACAAAGTAATTTCTC-TGTTTTAAAGTGTCAGCG-GGTGGTAAGGTTTT-CGA-TTCCTTGAT---------------------------------AC----AGTA---TATTTCCG--GAATTTTC-CT-TCCG-CCATTGTTCGTTATACTAGTAATCATTTAT------TGCATCCAAATCA-CT-AAGA
gi|12 : aTTTT--TTTG---TTTTTT-T-TTGGGGGGGGGTGGGGGGGAGTAATTA--GATTTTGTTAATCTGACCTGACGCTTAACAAAGA--AA-AAAA-----C-AAAGTATGACCT
gi|13 : gttttgtttggtAA--GTGGCGTCA-CCTACAATTAATTGCACTGCTCGTATTTTCGTTTG---TGTTTC---CTGA-------TAGG------TAATTA---------------TGACCTGATGCTTAACAAAGA--AA-AA----------AGGTATGACCTtaat
gi|14 : aacTTGTACAGCTCGTATTTTCGTTTGGGTTTTTTT-C-CTGA-------TAGG------TAATTAGCGGTCATGTTAATCTGACCTG----TTAACAAGGAATAA-AAAA-----A-AAGGTATGGCC
gi|15 : g--GTGGCACCA-CCTACAATGAATTGTA---CTCGTATTTTCGTTTG---TTTTTTGT-CT-------------------TTCCTA----TTTTGCCAGTCTGACCTGATGTTTAACAAAG
gi|16 : AGGCCAGACAAAGTCATTTCTT-TGTT---AAGCGTCAACG-GGCGGTGAGGTTTT-CGA-TTCCCTGGTGGta
gi|17 : ttG------TAATTA--GGATTTGTTAGTCTGATTTGACATTTAACAAAG------AAAA-----A-CACGCGTGGC
gi|18 : -------TAGG------AAATAA--GGTTTTGTTAGTCTGACCTGATGCCCAACAA--A--AA-AAAC-----C-CAGGTATGGCCTgtttttattca
gi|19 : -CTGG-------TAGG------TAATTG--GGTTTTGTCCATCTGACCTGACACTTA
gi|2 : GGCCAGGCCAAGTCATTTCTG-TGTT---AAGCGTCCGCG-GGCGGAGAGGTTT---------------GGCAAAA---AAT-AAAC-----CCAACCCA-AAC----AGTA---TATTTCCG--ACATTTTC-CT-TCAG-CCACTGTTCGTTAT-------ATTATTCAT------TGCATCCAAATCA-CT-AAGAAGAT---A---TAGATC-A-CCATTTTT-T--TTACT-TCCACTGTG--TCA--AATTTAG-T--G-CACCAGG--CATGCATGTT------TTGGATAT-CTGATCCTCG--------------T-A-GGCTGAAATGATAA---AAAA--GAGGCGTCA-CCTACAATGAGGTGTACAGCTCGTATTTTCA--TG---TTTTTT-TCCTGA-------TAGG------TAATTA--GGTTTTGTTAGTCTGACCTGACGCTTTTCAAAGA--AA-GAAAAACCTA-CAGGTGTGGCTT
gi|20 : AGGCCAGACAAAGTCATTTCTT-tact
gi|3 : gcttAGGCCACACCAAATAATACCTT-TG------------GGCG-GGCAGTTAAGTTTT-TGA-TCCCCCGATGGCAAAA---AA-----------CAAA-------C----AGCA---TTTTTCCT--AAATTTCC-TG-TGCG-TCATTGATTGTTAT-------ATTATTAAT------TGCATCCAAATTA-CT-AAGCAGCT---T---TAAATA-G-CCA----T-TCATTACA-CAGACTGTT--TCA--CATTCAG-T--G-----------------GTT------TTGGATAT-TTGATCCTCGTC-AGTACGG----T-A-GTATTAAAT-AAGTGGTACAT--AT-GTACCA-TCTGCAATGAATTGTACTGCTCGTATTTCTG--------TTTTT-C-CTGA-------TAGG------TAATTA--GG-GTTGTTAGTCGGACCTGACGTTTAACAAAG---AA-AAAA-----A-CAGGTAT
gi|4 : ttAGGCTAGAACAAATCAACACTT-T--T---AAGTGTGAGTG-AGCGGTTAGGATCT-CGA-TGTTCTGATGGCA-------------------CAAA---A-AA------GTA---TATTTCCG--GAATTTTC-CA-TCCG-AGTTTGTTCGTTAT-------AGAATCCGT------TGCACTCAAATCA-TG-AAAGGGCT---A---TAAAAC-G-CTG---------TTACT-CTGACTA-G--T----ACTGTGT-T--G-CACCATA--TCTGCATGTT------TTGGACAT-TTAATCCTCATC-AAT--AATATTTGA-GATTGAAATTA------AAAA--GTGGTGTCA-TCTACATTAAATTGTaagc
gi|5 : aCATCCCTTGTCTT---A---GTCAGTGTGATCGTTAGGTTTTTCGAATGCCCTG-TGGCAAAA---AAC-AAA------CAGT---ATAAC----AGTAGTTCATT-------AATTT---CTGTCCC-TCACTG------AT-------ATTATTTATAT----TGCATC-AAATCATCT-AAGAAGCT---TAATTGAATAAG-ACT----T-T--TTACAACCGTCTGTT--CCATAAATTTAGGT--G-GACCAGAGACAGGTATGTG------TTGG-TAT-TTGATTCTCATC-AGT--GGTACTT-A-GGCTGAAATAAAAGAtgaca
gi|6 : GCCAGACAAGGTCATTTCTG-TGTT---AAGCG--GGCG-GCCGGGTTGGTTAT-CGA-TTCCC-GATGACAAAA---CAACAAAA-----CAAG---TTAAC----A------TATTTCCAATGTATCTTCTCT-GCTA-TTATTGTTCATTAT-------ATTATTCAT------ATCATCGAAATCA----------------------ATC-G-CCT----TAT--TTATT-CGTACTGTGGGTCA--AATTTAC-TTCG-CACCAGA---ATGCGTGTTGAATGCTTCGATATATTGATCTGCATTAGGT--G
gi|7 : GTCAGTGTGATCGTTAGGTTTTTCGAATGCCCTG-TGGCAAAA---AAC-AAA------CAGT---A-TAC----A-TG---TATTTCCT--TAATTT---CTGTCCC-TCACTGATCATTAT-------GTTAATAAT------TGCATCCAAATCA-CT-AAGAAGCTTAAT---TGAATA-GACCT----T-T--TTACA-CCGACTGTT--CCA--AATTTAG-T--G-GACCAGA--CATG--TG--------TTGGATAT-TTGATTCTCATC-AGT--GGTtatagcttgg
gi|8 : tcccttgtcttaAAA---AAA-AAAA-----AAAA---C-AAC----A-TA---TATTTCCG--GAATTT-C-CT----GATCA--GT--GTAGC-------ATTATTCAT------TGCATCCAAG-AA-CTTAAGACGCT---A----AAATC-G-CCA----T-T--T-ACT-TCT-CTA-----CA--AATT--G-T--GGCACC-----------TATT------TTAG------TGA----CAGA-GTT--GTTACTT-A-GGCTGAAATAAAATAA--AAA--GTGGCATCAACCTACAATGAGTTGTACAGCTCGTACTTTC
gi|9 : AGGCCAGACCAAATCACTTCGT-TGTT---AAGCGTCAGCG-GGTGGTTAGGTTTC-CGA-TGCCCTGATGGCAAAA---AAA-AAAAAAAGGCGAA---A-AAA----GGTA---TATTTCTG--GACATTTC-CG-CCTG-TCGTTGTTCGTTAT-------GTTATTCATTGCGCATGCATCTAAATCA-CC-ATGAAGCT---G---TAAATC-G-CCG----T-------------ATTGTG--TAA--AATTTAG-T--G-
Alignments
lowQualScore : 3333333333333333333333333 1111111 111111 1111111 2222222222 11111111 111111 222222 111111 111 1111111 111111 1111111
lowQualScore : 1 4 1 777 1 8 0 8 8 2 4 9999999999999999999999999 8888 5 777 55 7 4 8 4 0 1 3333333 777777 4 4 8888888 44 4 8888888888 77777 9999 66 4 66 66 0 44444444 222222 3 4 666 66 0 555 444444 77 5 66 444444 5 0 66 888 666 3333333 000000 55 888 4 4444444
lowQualScore : . . . ... . . . . . . . ......................... .... . ... .. . . . . . . ....... ...... . . ....... .. . .......... ..... .... .. . .. .. . ........ ...... . . ... .. . ... ...... .. . .. ...... . . .. ... ... ....... ...... .. ... . .......
lowQualScore : 1 0 1 888 9 0 8 0 0 4 7 2222222222222222222222222 5555 0 000 55 2 0 0 0 4 1 0000000 000000 0 0 1111111 66 4 1111111111 11111 1111 11 4 11 99 1 00000000 888888 6 4 222 11 2 999 999999 99 7 99 444444 0 5 88 888 444 0000000 555555 00 000 4 6666666
consensus : AGGCCAGACCAAGTCATTTCTT-TGTT---AAGCGTCAGCG-GGCGGTTAGGTTTT-CGA-TNCCCTGATGGCAAAA---AAA-AAAA-----CAAA---A-AAC----AGTA---TATTTCCG--GAATTTTC-CT-TCCG-TCATTGTTCGTTAT-------ATTATTCAT------TGCATCCAAATCA-CT-AAGAAGCT---N---TAAATC-G-CCG----T-T--TTACT-CCGACTGTG--TCA--AATTTAG-T--G-CACCAGA--CATGCATGTT------TTGGATAT-TTGATCCTCATC-GGT--GGTACTT-A-GGCTGAAATAAAATAA--AAA-AGTGG--CGT------C-ACCTACAATGAATTGTACAGCTCGTATTTTCGTTTG---TTTTTT-T-CTGA-------TAGG------TAATTA--GGTTTTGTTAGTCTGACCTGACGCTTAACAAAGA--AA-AAAA-----A-CAGGTATGGCCT
Reference ( family-1745 ) : AGGCCAGACCAAGTCATTTCTT-TGTT---AAGCGTCAGCG-GGCGGTTAGGTTTT-CGA-TNCCCTGATGGCAAAA---AAA-AAAA-----CAAA---A-AAC----AGTA---TATTTCCG--GAATTTTC-CT-TCCG-TCATTGTTCGTTAT-------ATTATTCAT------TGCATCCAAATCA-CT-AAGAAGCT---N---TAAATC-G-CCG----T-T--TTACT-CCGACTGTG--TCA--AATTTAG-T--G-CACCAGA--CATGCATGTT------TTGGATAT-TTGATCCTCATC-GGT--GGTACTT-A-GGCTGAAATAAAANAA--AAA-AGTGG--CGT------C-ACCTACAATGAATTGTACAGCTCGTATTTTCGTTTG---TTTTTT-T-CTGA-------TAGG------TAATTA--GGTTTTGTTAGTCTGACCTGACGCTTAACAAAGA--AA-AAAA-----A-CAGGTATGGCCT
gi|1 : AGGCCAGAGCAGGTCATCTCTT-TCTT---AAGAATCAGCG-GGCGGTGAGGTTTT-CGG-TTCCATGATGGCAAAACAAAAACAAAA-----CAAA---A-AACCCACAGTA---TATTTCCG--GAATTTTC-CT-TCCG-TCATTGTTCGTTAT-------ATTATTCAT------TGCATCCAAATCA-CC-AAGAAGCT---T---TATATT-G-CCGA---TGT--TTACT-CCTACTGTG--TCA--AATTTAG-T--G-CACAAGA--CATGCATGTT------TTGGGTAT-CTGATCCACATA-GGT--GATACTT-A-GGGTGAAATAAAAAAACAAAACAGTGA--CGT------C-ACCTACAACGTTTTGTACAGCTCGTATTTTTGAATG---TTTTTT-T-CTGA-------TAGT------TAATTA--GGTTTTGTTAATCCGACCTGAGGCTTAACAAAGA--AA-AAAA-----AGCAGGTATGGCTT
gi|10 : GTT------TTAGATAG-TTG-TCCTCATC-AGT--GGCACTT-AAGGCTGAAATAAAA--A--AAA-AGTTG--CGT------C-ACCAACAATGAATTGTACATTTCGTATTTTCGTTTG---TTTGTC---CTGA-------TAGG------TAAGTA--GGTTTTGCTAGTCTGACCTGACGCTTAATAAAGA--AATAAGA-----A-a
gi|11 : AGGCCAGACAAAGTAATTTCTC-TGTTTTAAAGTGTCAGCG-GGTGGTAAGGTTTT-CGA-TTCCTTGAT---------------------------------AC----AGTA---TATTTCCG--GAATTTTC-CT-TCCG-CCATTGTTCGTTATACTAGTAATCATTTAT------TGCATCCAAATCA-CT-AAGA
gi|12 : aTTTT--TTTG---TTTTTT-T-TTGGGGGGGGGTGGGGGGGAGTAATTA--GATTTTGTTAATCTGACCTGACGCTTAACAAAGA--AA-AAAA-----C-AAAGTATGACCT
gi|13 : gttttgtttggtA--ACA-AGTGG--CGT------C-ACCTACAATTAATTGCACTGCTCGTATTTTCGTTTG---TGTTTC---CTGA-------TAGG------TAATTA---------------TGACCTGATGCTTAACAAAGA--AA-AA----------AGGTATGACCTtaat
gi|14 : TTGTACAGCTCGTATTTTCGTTTGGGTTTTTTT-C-CTGA-------TAGG------TAATTAGCGGTCATGTTAATCTGACCTG----TTAACAAGGAATAA-AAAA-----A-AAGGTATGGCC
gi|15 : gGTGG--CAC------C-ACCTACAATGAATTGTA---CTCGTATTTTCGTTTG---TTTTTTGT-CT-------------------TTCCTA----TTTTGCCAGTCTGACCTGATGTTTAACAAAG
gi|16 : AGGCCAGACAAAGTCATTTCTT-TGTT---AAGCGTCAACG-GGCGGTGAGGTTTT-CGA-TTCCCTGGTGGta
gi|17 : ttG------TAATTA--GGATTTGTTAGTCTGATTTGACATTTAACAAAG------AAAA-----A-CACGCGTGGC
gi|18 : -------TAGG------AAATAA--GGTTTTGTTAGTCTGACCTGATGCCCAACAA--A--AA-AAAC-----C-CAGGTATGGCCTgtttttattca
gi|19 : -CTGG-------TAGG------TAATTG--GGTTTTGTCCATCTGACCTGACACTTA
gi|2 : GGCCAGGCCAAGTCATTTCTG-TGTT---AAGCGTCCGCG-GGCGGAGAGGTTT---------------GGCAAAA---AAT-AAAC-----CCAACCCA-AAC----AGTA---TATTTCCG--ACATTTTC-CT-TCAG-CCACTGTTCGTTAT-------ATTATTCAT------TGCATCCAAATCA-CT-AAGAAGAT---A---TAGATC-A-CCATTTTT-T--TTACT-TCCACTGTG--TCA--AATTTAG-T--G-CACCAGG--CATGCATGTT------TTGGATAT-CTGATCCTCG--------------T-A-GGCTGAAAT--GATAA--AAA-AGAGG--CGT------C-ACCTACAATGAGGTGTACAGCTCGTATTTTCA--TG---TTTTTT-TCCTGA-------TAGG------TAATTA--GGTTTTGTTAGTCTGACCTGACGCTTTTCAAAGA--AA-GAAAAACCTA-CAGGTGTGGCTT
gi|20 : AGGCCAGACAAAGTCATTTCTT-tact
gi|3 : gcttAGGCCACACCAAATAATACCTT-TG------------GGCG-GGCAGTTAAGTTTT-TGA-TCCCCCGATGGCAAAA---AA-----------CAAA-------C----AGCA---TTTTTCCT--AAATTTCC-TG-TGCG-TCATTGATTGTTAT-------ATTATTAAT------TGCATCCAAATTA-CT-AAGCAGCT---T---TAAATA-G-CCA----T-TCATTACA-CAGACTGTT--TCA--CATTCAG-T--G-----------------GTT------TTGGATAT-TTGATCCTCGTC-AGTACGGTAGT-----------AT----TAA--ATA-AGTGGTACATATGTACC-ATCTGCAATGAATTGTACTGCTCGTATTTCTG--------TTTTT-C-CTGA-------TAGG------TAATTA--GG-GTTGTTAGTCGGACCTGACGTTTAACAAAG---AA-AAAA-----A-CAGGTAT
gi|4 : ttAGGCTAGAACAAATCAACACTT-T--T---AAGTGTGAGTG-AGCGGTTAGGATCT-CGA-TGTTCTGATGGCA-------------------CAAA---A-AA------GTA---TATTTCCG--GAATTTTC-CA-TCCG-AGTTTGTTCGTTAT-------AGAATCCGT------TGCACTCAAATCA-TG-AAAGGGCT---A---TAAAAC-G-CTG---------TTACT-CTGACTA-G--T----ACTGTGT-T--G-CACCATA--TCTGCATGTT------TTGGACAT-TTAATCCTCATC-AAT--AATATTTGA-GATTGAAAT-----TA--AAA-AGTGG--TGT------C-ATCTACATTAAATTGTaagc
gi|5 : aCATCCCTTGTCTT---A---GTCAGTGTGATCGTTAGGTTTTTCGAATGCCCTG-TGGCAAAA---AAC-AAA------CAGT---ATAAC----AGTAGTTCATT-------AATTT---CTGTCCC-TCACTG------AT-------ATTATTTATAT----TGCATC-AAATCATCT-AAGAAGCT---TAATTGAATAAG-ACT----T-T--TTACAACCGTCTGTT--CCATAAATTTAGGT--G-GACCAGAGACAGGTATGTG------TTGG-TAT-TTGATTCTCATC-AGT--GGTACTT-A-GGCTGAAATAAAAGAtgaca
gi|6 : GCCAGACAAGGTCATTTCTG-TGTT---AAGCG--GGCG-GCCGGGTTGGTTAT-CGA-TTCCC-GATGACAAAA---CAACAAAA-----CAAG---TTAAC----A------TATTTCCAATGTATCTTCTCT-GCTA-TTATTGTTCATTAT-------ATTATTCAT------ATCATCGAAATCA----------------------ATC-G-CCT----TAT--TTATT-CGTACTGTGGGTCA--AATTTAC-TTCG-CACCAGA---ATGCGTGTTGAATGCTTCGATATATTGATCTGCATTAGGT--G
gi|7 : GTCAGTGTGATCGTTAGGTTTTTCGAATGCCCTG-TGGCAAAA---AAC-AAA------CAGT---A-TAC----A-TG---TATTTCCT--TAATTT---CTGTCCC-TCACTGATCATTAT-------GTTAATAAT------TGCATCCAAATCA-CT-AAGAAGCTTAAT---TGAATA-GACCT----T-T--TTACA-CCGACTGTT--CCA--AATTTAG-T--G-GACCAGA--CATG--TG--------TTGGATAT-TTGATTCTCATC-AGT--GGTtatagcttgg
gi|8 : tcccttgtcttaAAA---AAA-AAAA-----AAAA---C-AAC----A-TA---TATTTCCG--GAATTT-C-CT----GATCA--GT--GTAGC-------ATTATTCAT------TGCATCCAAG-AA-CTTAAGACGCT---A----AAATC-G-CCA----T-T--T-ACT-TCT-CTA-----CA--AATT--G-T--GGCACC-----------TATT------TTAG------TGA----CAGA-GTT--GTTACTT-A-GGCTGAAATAAAAT-A--AAA-AGTGG--CAT------CAACCTACAATGAGTTGTACAGCTCGTACTTTC
gi|9 : AGGCCAGACCAAATCACTTCGT-TGTT---AAGCGTCAGCG-GGTGGTTAGGTTTC-CGA-TGCCCTGATGGCAAAA---AAA-AAAAAAAGGCGAA---A-AAA----GGTA---TATTTCTG--GACATTTC-CG-CCTG-TCGTTGTTCGTTAT-------GTTATTCATTGCGCATGCATCTAAATCA-CC-ATGAAGCT---G---TAAATC-G-CCG----T-------------ATTGTG--TAA--AATTTAG-T--G-
Alignments
lowQualScore : 3333333333333333333333333 1111111 111111 1111111 2222222222 11111111 111111 333333333 111111 111 1111111 111111 1111111
lowQualScore : 1 4 1 777 1 8 0 8 8 2 4 9999999999999999999999999 8888 5 777 55 7 4 8 4 0 1 3333333 777777 4 4 8888888 44 4 8888888888 77777 9999 66 4 66 66 0 44444444 222222 3 4 666 66 0 555 444444444 66 444444 5 0 66 888 666 3333333 000000 55 888 4 4444444
lowQualScore : . . . ... . . . . . . . ......................... .... . ... .. . . . . . . ....... ...... . . ....... .. . .......... ..... .... .. . .. .. . ........ ...... . . ... .. . ... ......... .. ...... . . .. ... ... ....... ...... .. ... . .......
lowQualScore : 1 0 1 888 9 0 8 0 0 4 7 2222222222222222222222222 5555 0 000 55 2 0 0 0 4 1 0000000 000000 0 0 1111111 66 4 1111111111 11111 1111 11 4 11 99 1 00000000 888888 6 4 222 11 2 999 111111111 99 444444 0 5 88 888 444 0000000 555555 00 000 4 6666666
consensus : AGGCCAGACCAAGTCATTTCTT-TGTT---AAGCGTCAGCG-GGCGGTTAGGTTTT-CGA-TNCCCTGATGGCAAAA---AAA-AAAA-----CAAA---A-AAC----AGTA---TATTTCCG--GAATTTTC-CT-TCCG-TCATTGTTCGTTAT-------ATTATTCAT------TGCATCCAAATCA-CT-AAGAAGCT---N---TAAATC-G-CCG----T-T--TTACT-CCGACTGTG--TCA--AATTTAG-T--G-CACCAGA--CATGCATGTT------TTGGATAT-TTGATCCTCATC-GGT--GGTACTT-A-GGCTGAAATAAAA---TAAAAAAGTGG--CGT------C-ACCTACAATGAATTGTACAGCTCGTATTTTCGTTTG---TTTTTT-T-CTGA-------TAGG------TAATTA--GGTTTTGTTAGTCTGACCTGACGCTTAACAAAGA--AA-AAAA-----A-CAGGTATGGCCT
Reference ( family-1745 ) : AGGCCAGACCAAGTCATTTCTT-TGTT---AAGCGTCAGCG-GGCGGTTAGGTTTT-CGA-TNCCCTGATGGCAAAA---AAA-AAAA-----CAAA---A-AAC----AGTA---TATTTCCG--GAATTTTC-CT-TCCG-TCATTGTTCGTTAT-------ATTATTCAT------TGCATCCAAATCA-CT-AAGAAGCT---N---TAAATC-G-CCG----T-T--TTACT-CCGACTGTG--TCA--AATTTAG-T--G-CACCAGA--CATGCATGTT------TTGGATAT-TTGATCCTCATC-GGT--GGTACTT-A-GGCTGAAATAAAA---TAAAAAAGTGG--CGT------C-ACCTACAATGAATTGTACAGCTCGTATTTTCGTTTG---TTTTTT-T-CTGA-------TAGG------TAATTA--GGTTTTGTTAGTCTGACCTGACGCTTAACAAAGA--AA-AAAA-----A-CAGGTATGGCCT
gi|1 : AGGCCAGAGCAGGTCATCTCTT-TCTT---AAGAATCAGCG-GGCGGTGAGGTTTT-CGG-TTCCATGATGGCAAAACAAAAACAAAA-----CAAA---A-AACCCACAGTA---TATTTCCG--GAATTTTC-CT-TCCG-TCATTGTTCGTTAT-------ATTATTCAT------TGCATCCAAATCA-CC-AAGAAGCT---T---TATATT-G-CCGA---TGT--TTACT-CCTACTGTG--TCA--AATTTAG-T--G-CACAAGA--CATGCATGTT------TTGGGTAT-CTGATCCACATA-GGT--GATACTT-A-GGGTGAAATAAAAAAACAAAACAGTGA--CGT------C-ACCTACAACGTTTTGTACAGCTCGTATTTTTGAATG---TTTTTT-T-CTGA-------TAGT------TAATTA--GGTTTTGTTAATCCGACCTGAGGCTTAACAAAGA--AA-AAAA-----AGCAGGTATGGCTT
gi|10 : GTT------TTAGATAG-TTG-TCCTCATC-AGT--GGCACTT-AAGGCTGAAATAAAA-----AAAAAGTTG--CGT------C-ACCAACAATGAATTGTACATTTCGTATTTTCGTTTG---TTTGTC---CTGA-------TAGG------TAAGTA--GGTTTTGCTAGTCTGACCTGACGCTTAATAAAGA--AATAAGA-----A-a
gi|11 : AGGCCAGACAAAGTAATTTCTC-TGTTTTAAAGTGTCAGCG-GGTGGTAAGGTTTT-CGA-TTCCTTGAT---------------------------------AC----AGTA---TATTTCCG--GAATTTTC-CT-TCCG-CCATTGTTCGTTATACTAGTAATCATTTAT------TGCATCCAAATCA-CT-AAGA
gi|12 : aTTTT--TTTG---TTTTTT-T-TTGGGGGGGGGTGGGGGGGAGTAATTA--GATTTTGTTAATCTGACCTGACGCTTAACAAAGA--AA-AAAA-----C-AAAGTATGACCT
gi|13 : gttttgtttggtAACAAGTGG--CGT------C-ACCTACAATTAATTGCACTGCTCGTATTTTCGTTTG---TGTTTC---CTGA-------TAGG------TAATTA---------------TGACCTGATGCTTAACAAAGA--AA-AA----------AGGTATGACCTtaat
gi|14 : TTGTACAGCTCGTATTTTCGTTTGGGTTTTTTT-C-CTGA-------TAGG------TAATTAGCGGTCATGTTAATCTGACCTG----TTAACAAGGAATAA-AAAA-----A-AAGGTATGGCC
gi|15 : gGTGG--CAC------C-ACCTACAATGAATTGTA---CTCGTATTTTCGTTTG---TTTTTTGT-CT-------------------TTCCTA----TTTTGCCAGTCTGACCTGATGTTTAACAAAG
gi|16 : AGGCCAGACAAAGTCATTTCTT-TGTT---AAGCGTCAACG-GGCGGTGAGGTTTT-CGA-TTCCCTGGTGGta
gi|17 : ttG------TAATTA--GGATTTGTTAGTCTGATTTGACATTTAACAAAG------AAAA-----A-CACGCGTGGC
gi|18 : -------TAGG------AAATAA--GGTTTTGTTAGTCTGACCTGATGCCCAACAA--A--AA-AAAC-----C-CAGGTATGGCCTgtttttattca
gi|19 : -CTGG-------TAGG------TAATTG--GGTTTTGTCCATCTGACCTGACACTTA
gi|2 : GGCCAGGCCAAGTCATTTCTG-TGTT---AAGCGTCCGCG-GGCGGAGAGGTTT---------------GGCAAAA---AAT-AAAC-----CCAACCCA-AAC----AGTA---TATTTCCG--ACATTTTC-CT-TCAG-CCACTGTTCGTTAT-------ATTATTCAT------TGCATCCAAATCA-CT-AAGAAGAT---A---TAGATC-A-CCATTTTT-T--TTACT-TCCACTGTG--TCA--AATTTAG-T--G-CACCAGG--CATGCATGTT------TTGGATAT-CTGATCCTCG--------------T-A-GGCTGAAAT--GA---TAAAAAAGAGG--CGT------C-ACCTACAATGAGGTGTACAGCTCGTATTTTCA--TG---TTTTTT-TCCTGA-------TAGG------TAATTA--GGTTTTGTTAGTCTGACCTGACGCTTTTCAAAGA--AA-GAAAAACCTA-CAGGTGTGGCTT
gi|20 : AGGCCAGACAAAGTCATTTCTT-tact
gi|3 : gcttAGGCCACACCAAATAATACCTT-TG------------GGCG-GGCAGTTAAGTTTT-TGA-TCCCCCGATGGCAAAA---AA-----------CAAA-------C----AGCA---TTTTTCCT--AAATTTCC-TG-TGCG-TCATTGATTGTTAT-------ATTATTAAT------TGCATCCAAATTA-CT-AAGCAGCT---T---TAAATA-G-CCA----T-TCATTACA-CAGACTGTT--TCA--CATTCAG-T--G-----------------GTT------TTGGATAT-TTGATCCTCGTC-AGTACGGTAGT-----------AT-------TAAATAAGTGGTACATATGTACC-ATCTGCAATGAATTGTACTGCTCGTATTTCTG--------TTTTT-C-CTGA-------TAGG------TAATTA--GG-GTTGTTAGTCGGACCTGACGTTTAACAAAG---AA-AAAA-----A-CAGGTAT
gi|4 : ttAGGCTAGAACAAATCAACACTT-T--T---AAGTGTGAGTG-AGCGGTTAGGATCT-CGA-TGTTCTGATGGCA-------------------CAAA---A-AA------GTA---TATTTCCG--GAATTTTC-CA-TCCG-AGTTTGTTCGTTAT-------AGAATCCGT------TGCACTCAAATCA-TG-AAAGGGCT---A---TAAAAC-G-CTG---------TTACT-CTGACTA-G--T----ACTGTGT-T--G-CACCATA--TCTGCATGTT------TTGGACAT-TTAATCCTCATC-AAT--AATATTTGA-GATTGAAAT-------T-AAAAAGTGG--TGT------C-ATCTACATTAAATTGTaagc
gi|5 : aCATCCCTTGTCTT---A---GTCAGTGTGATCGTTAGGTTTTTCGAATGCCCTG-TGGCAAAA---AAC-AAA------CAGT---ATAAC----AGTAGTTCATT-------AATTT---CTGTCCC-TCACTG------AT-------ATTATTTATAT----TGCATC-AAATCATCT-AAGAAGCT---TAATTGAATAAG-ACT----T-T--TTACAACCGTCTGTT--CCATAAATTTAGGT--G-GACCAGAGACAGGTATGTG------TTGG-TAT-TTGATTCTCATC-AGT--GGTACTT-A-GGCTGAAATAAAA---tgaca
gi|6 : GCCAGACAAGGTCATTTCTG-TGTT---AAGCG--GGCG-GCCGGGTTGGTTAT-CGA-TTCCC-GATGACAAAA---CAACAAAA-----CAAG---TTAAC----A------TATTTCCAATGTATCTTCTCT-GCTA-TTATTGTTCATTAT-------ATTATTCAT------ATCATCGAAATCA----------------------ATC-G-CCT----TAT--TTATT-CGTACTGTGGGTCA--AATTTAC-TTCG-CACCAGA---ATGCGTGTTGAATGCTTCGATATATTGATCTGCATTAGGT--Gga
gi|7 : GTCAGTGTGATCGTTAGGTTTTTCGAATGCCCTG-TGGCAAAA---AAC-AAA------CAGT---A-TAC----A-TG---TATTTCCT--TAATTT---CTGTCCC-TCACTGATCATTAT-------GTTAATAAT------TGCATCCAAATCA-CT-AAGAAGCTTAAT---TGAATA-GACCT----T-T--TTACA-CCGACTGTT--CCA--AATTTAG-T--G-GACCAGA--CATG--TG--------TTGGATAT-TTGATTCTCATC-AGT--GGTtatagcttgg
gi|8 : tcccttgtcttaAAA---AAA-AAAA-----AAAA---C-AAC----A-TA---TATTTCCG--GAATTT-C-CT----GATCA--GT--GTAGC-------ATTATTCAT------TGCATCCAAG-AA-CTTAAGACGCT---A----AAATC-G-CCA----T-T--T-ACT-TCT-CTA-----CA--AATT--G-T--GGCACC-----------TATT------TTAG------TGA----CAGA-GTT--GTTACTT-A-GGCTGAAATAAAA---T-AAAAAGTGG--CAT------CAACCTACAATGAGTTGTACAGCTCGTACTTTC
gi|9 : AGGCCAGACCAAATCACTTCGT-TGTT---AAGCGTCAGCG-GGTGGTTAGGTTTC-CGA-TGCCCTGATGGCAAAA---AAA-AAAAAAAGGCGAA---A-AAA----GGTA---TATTTCTG--GACATTTC-CG-CCTG-TCGTTGTTCGTTAT-------GTTATTCATTGCGCATGCATCTAAATCA-CC-ATGAAGCT---G---TAAATC-G-CCG----T-------------ATTGTG--TAA--AATTTAG-T--G-
Alignments
lowQualScore : 3333333333333333333333333 1111111 111111 1111111 2222222222 11111111 111111 333333333 111111 111 1111111 111111 1111111
lowQualScore : 1 4 1 777 1 8 0 8 8 2 4 9999999999999999999999999 8888 5 777 55 7 4 8 4 0 1 3333333 777777 4 4 8888888 44 4 8888888888 77777 9999 66 4 66 66 0 44444444 222222 3 4 666 66 0 555 444444444 66 444444 5 0 66 888 666 3333333 000000 55 888 4 4444444
lowQualScore : . . . ... . . . . . . . ......................... .... . ... .. . . . . . . ....... ...... . . ....... .. . .......... ..... .... .. . .. .. . ........ ...... . . ... .. . ... ......... .. ...... . . .. ... ... ....... ...... .. ... . .......
lowQualScore : 1 0 1 888 9 0 8 0 0 4 7 2222222222222222222222222 5555 0 000 55 2 0 0 0 4 1 0000000 000000 0 0 1111111 66 4 1111111111 11111 1111 11 4 11 99 1 00000000 888888 6 4 222 11 2 999 111111111 99 444444 0 5 88 888 444 0000000 555555 00 000 4 6666666
consensus : AGGCCAGACCAAGTCATTTCTT-TGTT---AAGCGTCAGCG-GGCGGTTAGGTTTT-CGA-TNCCCTGATGGCAAAA---AAA-AAAA-----CAAA---A-AAC----AGTA---TATTTCCG--GAATTTTC-CT-TCCG-TCATTGTTCGTTAT-------ATTATTCAT------TGCATCCAAATCA-CT-AAGAAGCT---N---TAAATC-G-CCG----T-T--TTACT-CCGACTGTG--TCA--AATTTAG-T--G-CACCAGA--CATGCATGTT------TTGGATAT-TTGATCCTCATC-GGT--GGTACTT-A-GGCTGAAATAAAA---TAAAAAAGTGG--CGT------C-ACCTACAATGAATTGTACAGCTCGTATTTTCGTTTG---TTTTTT-T-CTGA-------TAGG------TAATTA--GGTTTTGTTAGTCTGACCTGACGCTTAACAAAGA--AA-AAAA-----A-CAGGTATGGCCT
Reference ( family-1745 ) : AGGCCAGACCAAGTCATTTCTT-TGTT---AAGCGTCAGCG-GGCGGTTAGGTTTT-CGA-TNCCCTGATGGCAAAA---AAA-AAAA-----CAAA---A-AAC----AGTA---TATTTCCG--GAATTTTC-CT-TCCG-TCATTGTTCGTTAT-------ATTATTCAT------TGCATCCAAATCA-CT-AAGAAGCT---N---TAAATC-G-CCG----T-T--TTACT-CCGACTGTG--TCA--AATTTAG-T--G-CACCAGA--CATGCATGTT------TTGGATAT-TTGATCCTCATC-GGT--GGTACTT-A-GGCTGAAATAAAA---TAAAAAAGTGG--CGT------C-ACCTACAATGAATTGTACAGCTCGTATTTTCGTTTG---TTTTTT-T-CTGA-------TAGG------TAATTA--GGTTTTGTTAGTCTGACCTGACGCTTAACAAAGA--AA-AAAA-----A-CAGGTATGGCCT
gi|1 : AGGCCAGAGCAGGTCATCTCTT-TCTT---AAGAATCAGCG-GGCGGTGAGGTTTT-CGG-TTCCATGATGGCAAAACAAAAACAAAA-----CAAA---A-AACCCACAGTA---TATTTCCG--GAATTTTC-CT-TCCG-TCATTGTTCGTTAT-------ATTATTCAT------TGCATCCAAATCA-CC-AAGAAGCT---T---TATATT-G-CCGA---TGT--TTACT-CCTACTGTG--TCA--AATTTAG-T--G-CACAAGA--CATGCATGTT------TTGGGTAT-CTGATCCACATA-GGT--GATACTT-A-GGGTGAAATAAAAAAACAAAACAGTGA--CGT------C-ACCTACAACGTTTTGTACAGCTCGTATTTTTGAATG---TTTTTT-T-CTGA-------TAGT------TAATTA--GGTTTTGTTAATCCGACCTGAGGCTTAACAAAGA--AA-AAAA-----AGCAGGTATGGCTT
gi|10 : GTT------TTAGATAG-TTG-TCCTCATC-AGT--GGCACTT-AAGGCTGAAATAAAA-----AAAAAGTTG--CGT------C-ACCAACAATGAATTGTACATTTCGTATTTTCGTTTG---TTTGTC---CTGA-------TAGG------TAAGTA--GGTTTTGCTAGTCTGACCTGACGCTTAATAAAGA--AATAAGA-----A-a
gi|11 : AGGCCAGACAAAGTAATTTCTC-TGTTTTAAAGTGTCAGCG-GGTGGTAAGGTTTT-CGA-TTCCTTGAT---------------------------------AC----AGTA---TATTTCCG--GAATTTTC-CT-TCCG-CCATTGTTCGTTATACTAGTAATCATTTAT------TGCATCCAAATCA-CT-AAGA
gi|12 : aTTTT--TTTG---TTTTTT-T-TTGGGGGGGGGTGGGGGGGAGTAATTA--GATTTTGTTAATCTGACCTGACGCTTAACAAAGA--AA-AAAA-----C-AAAGTATGACCT
gi|13 : gttttgtttggtAACAAGTGG--CGT------C-ACCTACAATTAATTGCACTGCTCGTATTTTCGTTTG---TGTTTC---CTGA-------TAGG------TAATTA---------------TGACCTGATGCTTAACAAAGA--AA-AA----------AGGTATGACCTtaat
gi|14 : TTGTACAGCTCGTATTTTCGTTTGGGTTTTTTT-C-CTGA-------TAGG------TAATTAGCGGTCATGTTAATCTGACCTG----TTAACAAGGAATAA-AAAA-----A-AAGGTATGGCC
gi|15 : gGTGG--CAC------C-ACCTACAATGAATTGTA---CTCGTATTTTCGTTTG---TTTTTTGT-CT-------------------TTCCTA----TTTTGCCAGTCTGACCTGATGTTTAACAAAG
gi|16 : AGGCCAGACAAAGTCATTTCTT-TGTT---AAGCGTCAACG-GGCGGTGAGGTTTT-CGA-TTCCCTGGTGGta
gi|17 : ttG------TAATTA--GGATTTGTTAGTCTGATTTGACATTTAACAAAG------AAAA-----A-CACGCGTGGC
gi|18 : -------TAGG------AAATAA--GGTTTTGTTAGTCTGACCTGATGCCCAACAA--A--AA-AAAC-----C-CAGGTATGGCCTgtttttattca
gi|19 : -CTGG-------TAGG------TAATTG--GGTTTTGTCCATCTGACCTGACACTTA
gi|2 : GGCCAGGCCAAGTCATTTCTG-TGTT---AAGCGTCCGCG-GGCGGAGAGGTTT---------------GGCAAAA---AAT-AAAC-----CCAACCCA-AAC----AGTA---TATTTCCG--ACATTTTC-CT-TCAG-CCACTGTTCGTTAT-------ATTATTCAT------TGCATCCAAATCA-CT-AAGAAGAT---A---TAGATC-A-CCATTTTT-T--TTACT-TCCACTGTG--TCA--AATTTAG-T--G-CACCAGG--CATGCATGTT------TTGGATAT-CTGATCCTCG--------------T-A-GGCTGAAAT--GA---TAAAAAAGAGG--CGT------C-ACCTACAATGAGGTGTACAGCTCGTATTTTCA--TG---TTTTTT-TCCTGA-------TAGG------TAATTA--GGTTTTGTTAGTCTGACCTGACGCTTTTCAAAGA--AA-GAAAAACCTA-CAGGTGTGGCTT
gi|20 : AGGCCAGACAAAGTCATTTCTT-tact
gi|3 : gcttAGGCCACACCAAATAATACCTT-TG------------GGCG-GGCAGTTAAGTTTT-TGA-TCCCCCGATGGCAAAA---AA-----------CAAA-------C----AGCA---TTTTTCCT--AAATTTCC-TG-TGCG-TCATTGATTGTTAT-------ATTATTAAT------TGCATCCAAATTA-CT-AAGCAGCT---T---TAAATA-G-CCA----T-TCATTACA-CAGACTGTT--TCA--CATTCAG-T--G-----------------GTT------TTGGATAT-TTGATCCTCGTC-AGTACGGTAGT-----------AT-------TAAATAAGTGGTACATATGTACC-ATCTGCAATGAATTGTACTGCTCGTATTTCTG--------TTTTT-C-CTGA-------TAGG------TAATTA--GG-GTTGTTAGTCGGACCTGACGTTTAACAAAG---AA-AAAA-----A-CAGGTAT
gi|4 : ttAGGCTAGAACAAATCAACACTT-T--T---AAGTGTGAGTG-AGCGGTTAGGATCT-CGA-TGTTCTGATGGCA-------------------CAAA---A-AA------GTA---TATTTCCG--GAATTTTC-CA-TCCG-AGTTTGTTCGTTAT-------AGAATCCGT------TGCACTCAAATCA-TG-AAAGGGCT---A---TAAAAC-G-CTG---------TTACT-CTGACTA-G--T----ACTGTGT-T--G-CACCATA--TCTGCATGTT------TTGGACAT-TTAATCCTCATC-AAT--AATATTTGA-GATTGAAAT-------T-AAAAAGTGG--TGT------C-ATCTACATTAAATTGTaagc
gi|5 : aCATCCCTTGTCTT---A---GTCAGTGTGATCGTTAGGTTTTTCGAATGCCCTG-TGGCAAAA---AAC-AAA------CAGT---ATAAC----AGTAGTTCATT-------AATTT---CTGTCCC-TCACTG------AT-------ATTATTTATAT----TGCATC-AAATCATCT-AAGAAGCT---TAATTGAATAAG-ACT----T-T--TTACAACCGTCTGTT--CCATAAATTTAGGT--G-GACCAGAGACAGGTATGTG------TTGG-TAT-TTGATTCTCATC-AGT--GGTACTT-A-GGCTGAAATAAAA---tgaca
gi|6 : GCCAGACAAGGTCATTTCTG-TGTT---AAGCG--GGCG-GCCGGGTTGGTTAT-CGA-TTCCC-GATGACAAAA---CAACAAAA-----CAAG---TTAAC----A------TATTTCCAATGTATCTTCTCT-GCTA-TTATTGTTCATTAT-------ATTATTCAT------ATCATCGAAATCA----------------------ATC-G-CCT----TAT--TTATT-CGTACTGTGGGTCA--AATTTAC-TTCG-CACCAGA---ATGCGTGTTGAATGCTTCGATATATTGATCTGCATTAGGT--Gga
gi|7 : GTCAGTGTGATCGTTAGGTTTTTCGAATGCCCTG-TGGCAAAA---AAC-AAA------CAGT---A-TAC----A-TG---TATTTCCT--TAATTT---CTGTCCC-TCACTGATCATTAT-------GTTAATAAT------TGCATCCAAATCA-CT-AAGAAGCTTAAT---TGAATA-GACCT----T-T--TTACA-CCGACTGTT--CCA--AATTTAG-T--G-GACCAGA--CATG--TG--------TTGGATAT-TTGATTCTCATC-AGT--GGTtatagcttgg
gi|8 : tcccttgtcttaAAA---AAA-AAAA-----AAAA---C-AAC----A-TA---TATTTCCG--GAATTT-C-CT----GATCA--GT--GTAGC-------ATTATTCAT------TGCATCCAAG-AA-CTTAAGACGCT---A----AAATC-G-CCA----T-T--T-ACT-TCT-CTA-----CA--AATT--G-T--GGCACC-----------TATT------TTAG------TGA----CAGA-GTT--GTTACTT-A-GGCTGAAATAAAA---T-AAAAAGTGG--CAT------CAACCTACAATGAGTTGTACAGCTCGTACTTTC
gi|9 : AGGCCAGACCAAATCACTTCGT-TGTT---AAGCGTCAGCG-GGTGGTTAGGTTTC-CGA-TGCCCTGATGGCAAAA---AAA-AAAAAAAGGCGAA---A-AAA----GGTA---TATTTCTG--GACATTTC-CG-CCTG-TCGTTGTTCGTTAT-------GTTATTCATTGCGCATGCATCTAAATCA-CC-ATGAAGCT---G---TAAATC-G-CCG----T-------------ATTGTG--TAA--AATTTAG-T--G-
blockSeqs : A G G TTA T T T A T A AAAAAAAAAAGGCGAAA . G GTT AT T T G A T ACTAGTA TGCGCA T T TAAT AA A ATTTTTT AACCG TGGG TA G TC GC GACAGGTA GAATGC A A TAG AC AA AAAAT TA ATGTAC A TT GGT GT GGGGGGG GGGGAG GC AAT T AACCTA
blockSeqs : A . G . C T T A T G AATAAACCCAACCCA . G . . T . G . T . AT . . TAAT C . ATTCA TTCC TG . . . C CATGCA . A . CA . GA AAAA . . . TT . TC . . . A . A
blockSeqs : C . G . C . . . C A CAACAAAACAAGTT . G . . C . . . A . . . . A A . TTAT ACAG TT . . . C TCTGCA . A . CA . A GATA . . . TT . T . . . A . C
blockSeqs : A . G . T . . . G A AACAAACAGTAT . G . . T . . . T . . . . T C . TTT TCTG TT . . . G ATGCG . A . CA . A TA . . . TT . C . . . A . A
blockSeqs : C . C . C . . . G A AAAAAAAAAAAC . G . . T . . . T . . . . A C . TTT TCGT TT . . . C CATG . A . CA . A T . . . TT . C . . . A . A
blockSeqs : C . G . C . . . T A AACAAACAGTA . G . . T . . . A . . . . A A . ATT ACCG TG . . . G . . A . CA . . . . . . . . . . . A . C
blockSeqs : A . G . . . . . G . AACAAA . . . . . . . . T . . . . G C . GT TTCT G . . . . . . . . AG . . . . . . . . . . . . A
blockSeqs : C . . . . . . . G . CAAAA . . . . . . . . T . . . . . C . G . . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . . . . . . . . . . . . .
blockSeqs : . .
blockSeqCons : AACAAACAAA*************** **** NTT******* NAA****** A******
originalCons : AGGCCAGACCAAGTCATTTCTT-TGTT---AAGCGTCAGCG-GGCGGTTAGGTTTT-CGA-TNCCCTGATGGCAAAA---AAA-AAAA-----CAAA---A-AAC----AGTA---TATTTCCG--GAATTTTC-CT-TCCG-TCATTGTTCGTTAT-------ATTATTCAT------TGCATCCAAATCA-CT-AAGAAGCT---N---TAAATC-G-CCG----T-T--TTACT-CCGACTGTG--TCA--AATTTAG-T--G-CACCAGA--CATGCATGTT------TTGGATAT-TTGATCCTCATC-GGT--GGTACTT-A-GGCTGAAATAAAA---TAAAAAAGTGG--CGT------C-ACCTACAATGAATTGTACAGCTCGTATTTTCGTTTG---TTTTTT-T-CTGA-------TAGG------TAATTA--GGTTTTGTTAGTCTGACCTGACGCTTAACAAAGA--AA-AAAA-----A-CAGGTATGGCCT
finalCons : AGGCCAGACCAAGTCATTTCTT-TGTT---AAGCGTCAGCG-GGCGGTTAGGTTTT-CGA-TNCCCTGATGGCAAAAAACAAACAAA---------------AAC----AGTA---TATTTCCG--GAATTTTC-CT-TCCG-TCATTGTTCGTTAT-------ATTATTCAT------TGCATCCAAATCA-CT-AAGAAGCT---N---TAAATC-G-CCNTT-------TTACT-CCGACTGTG--TCA--AATTTAG-T--G-CACCAGA--CATGCATGTT------TTGGATAT-TTGATCCTCATC-GGT--GGTACTT-A-GGCTGAAATNAA------AAAAAGTGG--CGT------C-ACCTACAATGAATTGTACAGCTCGTATTTTCGTTTG---TTTTTT-T-CTGA-------TAGG------TAATTA--GGTTTTGTTAGTCTGACCTGACGCTTAACAAAGA--AA-AAAAA------CAGGTATGGCCT
Alignments
lowQualScore : 1111 444444444444444444444444444 1111111 111111 1111 22222222222 11111111 111111 111 111111 111111 111 1111111 111111 1111111
lowQualScore : 1 4 1 777 1 8 0 8 8 2 4 2222 1 333333333333333333333333333 5 777 55 7 4 8 4 0 1 3333333 777777 4 4 8888 44 4 11111111111 77777 9999 66 4 66 66 0 44444444 222222 3 4 666 66 0 555 111 66 666666 5 66 444444 5 0 66 888 666 3333333 000000 55 888 4 4444444
lowQualScore : . . . ... . . . . . . . .... . ........................... . ... .. . . . . . . ....... ...... . . .... .. . ........... ..... .... .. . .. .. . ........ ...... . . ... .. . ... ... .. ...... . .. ...... . . .. ... ... ....... ...... .. ... . .......
lowQualScore : 1 0 1 888 9 0 8 0 0 4 7 5555 6 333333333333333333333333333 0 000 55 2 0 0 0 4 1 0000000 000000 0 0 1111 66 4 66666666666 11111 1111 11 4 11 99 1 00000000 888888 6 4 222 11 2 999 777 99 444444 0 99 444444 0 5 88 888 444 0000000 555555 00 000 4 6666666
consensus : AGGCCAGACCAAGTCATTTCTT-TGTT---AAGCGTCAGCG-GGCGGTTAGGTTTT-CGA-TNCCCTGATGGCAAAA----AACAAA------C--A--A---N--A-A-----CAGTA---TATTTCCG--GAATTTTC-CT-TCCG-TCATTGTTCGTTAT-------ATTATTCAT------TGCATCCAAATCA-CT-AAGAAGCTN---TAAATC-G-CC----N-T-T--TTACT-CCGACTGTG--TCA--AATTTAG-T--G-CACCAGA--CATGCATGTT------TTGGATAT-TTGATCCTCATC-GGT--GGTACTT-A-GGCTGAAATAA-AA--AAA------A-GTGG--CGT------CA-CCTACAATGAATTGTACAGCTCGTATTTTCGTTTG---TTTTTT-T-CTGA-------TAGG------TAATTA--GGTTTTGTTAGTCTGACCTGACGCTTAACAAAGA--AA-AAAA-----A-CAGGTATGGCCT
Reference ( family-1745 ) : AGGCCAGACCAAGTCATTTCTT-TGTT---AAGCGTCAGCG-GGCGGTTAGGTTTT-CGA-TNCCCTGATGGCAAAA----AACAAA------C--A--A---A--A-A-----CAGTA---TATTTCCG--GAATTTTC-CT-TCCG-TCATTGTTCGTTAT-------ATTATTCAT------TGCATCCAAATCA-CT-AAGAAGCTN---TAAATC-G-CC----N-T-T--TTACT-CCGACTGTG--TCA--AATTTAG-T--G-CACCAGA--CATGCATGTT------TTGGATAT-TTGATCCTCATC-GGT--GGTACTT-A-GGCTGAAATNA-AA--AAA------A-GTGG--CGT------CA-CCTACAATGAATTGTACAGCTCGTATTTTCGTTTG---TTTTTT-T-CTGA-------TAGG------TAATTA--GGTTTTGTTAGTCTGACCTGACGCTTAACAAAGA--AA-AAAA-----A-CAGGTATGGCCT
gi|1 : AGGCCAGAGCAGGTCATCTCTT-TCTT---AAGAATCAGCG-GGCGGTGAGGTTTT-CGG-TTCCATGATGGCAAAACAAAAACAAAA-----C--A--A---A--A-AACCCACAGTA---TATTTCCG--GAATTTTC-CT-TCCG-TCATTGTTCGTTAT-------ATTATTCAT------TGCATCCAAATCA-CC-AAGAAGCTT---TATATT-G-CC----GATGT--TTACT-CCTACTGTG--TCA--AATTTAG-T--G-CACAAGA--CATGCATGTT------TTGGGTAT-CTGATCCACATA-GGT--GATACTT-A-GGGTGAAATAA-AA--AAACAAAACA-GTGA--CGT------CA-CCTACAACGTTTTGTACAGCTCGTATTTTTGAATG---TTTTTT-T-CTGA-------TAGT------TAATTA--GGTTTTGTTAATCCGACCTGAGGCTTAACAAAGA--AA-AAAA-----AGCAGGTATGGCTT
gi|10 : GTT------TTAGATAG-TTG-TCCTCATC-AGT--GGCACTT-AAGGCTGAAATAA-AA--AAA------AAGTTG--CGT------CA-CCAACAATGAATTGTACATTTCGTATTTTCGTTTG---TTTGTC---CTGA-------TAGG------TAAGTA--GGTTTTGCTAGTCTGACCTGACGCTTAATAAAGA--AATAAGA-----A-a
gi|11 : AGGCCAGACAAAGTAATTTCTC-TGTTTTAAAGTGTCAGCG-GGTGGTAAGGTTTT-CGA-TTCCTTGAT--------------------------------------A-----CAGTA---TATTTCCG--GAATTTTC-CT-TCCG-CCATTGTTCGTTATACTAGTAATCATTTAT------TGCATCCAAATCA-CT-AAGA
gi|12 : aTTTT--TTTG---TTTTTT-T-TTGGGGGGGGGTGGGGGGGAGTAATTA--GATTTTGTTAATCTGACCTGACGCTTAACAAAGA--AA-AAAA-----C-AAAGTATGACCT
gi|13 : gttttgtttggtA--ACA------A-GTGG--CGT------CA-CCTACAATTAATTGCACTGCTCGTATTTTCGTTTG---TGTTTC---CTGA-------TAGG------TAATTA---------------TGACCTGATGCTTAACAAAGA--AA-AA----------AGGTATGACCTtaat
gi|14 : TTGTACAGCTCGTATTTTCGTTTGGGTTTTTTT-C-CTGA-------TAGG------TAATTAGCGGTCATGTTAATCTGACCTG----TTAACAAGGAATAA-AAAA-----A-AAGGTATGGCC
gi|15 : g-GTGG--CAC------CA-CCTACAATGAATTGTA---CTCGTATTTTCGTTTG---TTTTTTGT-CT-------------------TTCCTA----TTTTGCCAGTCTGACCTGATGTTTAACAAAG
gi|16 : AGGCCAGACAAAGTCATTTCTT-TGTT---AAGCGTCAACG-GGCGGTGAGGTTTT-CGA-TTCCCTGGTGGta
gi|17 : ttG------TAATTA--GGATTTGTTAGTCTGATTTGACATTTAACAAAG------AAAA-----A-CACGCGTGGC
gi|18 : -------TAGG------AAATAA--GGTTTTGTTAGTCTGACCTGATGCCCAACAA--A--AA-AAAC-----C-CAGGTATGGCCTgtttttattca
gi|19 : -CTGG-------TAGG------TAATTG--GGTTTTGTCCATCTGACCTGACACTTA
gi|2 : GGCCAGGCCAAGTCATTTCTG-TGTT---AAGCGTCCGCG-GGCGGAGAGGTTT---------------GGCAAAA----AATAAA------CCCA--ACCCA--A-A-----CAGTA---TATTTCCG--ACATTTTC-CT-TCAG-CCACTGTTCGTTAT-------ATTATTCAT------TGCATCCAAATCA-CT-AAGAAGATA---TAGATC-A-CCATTTT-T-T--TTACT-TCCACTGTG--TCA--AATTTAG-T--G-CACCAGG--CATGCATGTT------TTGGATAT-CTGATCCTCG--------------T-A-GGCTGAAATGATAA--AAA------A-GAGG--CGT------CA-CCTACAATGAGGTGTACAGCTCGTATTTTCA--TG---TTTTTT-TCCTGA-------TAGG------TAATTA--GGTTTTGTTAGTCTGACCTGACGCTTTTCAAAGA--AA-GAAAAACCTA-CAGGTGTGGCTT
gi|20 : AGGCCAGACAAAGTCATTTCTT-tact
gi|3 : gcttAGGCCACACCAAATAATACCTT-TG------------GGCG-GGCAGTTAAGTTTT-TGA-TCCCCCGATGGCAAAA----AACAAA------C--A-------------------GCA---TTTTTCCT--AAATTTCC-TG-TGCG-TCATTGATTGTTAT-------ATTATTAAT------TGCATCCAAATTA-CT-AAGCAGCTT---TAAATA-G-CC----A-T-TCATTACA-CAGACTGTT--TCA--CATTCAG-T--G-----------------GTT------TTGGATAT-TTGATCCTCGTC-AGTACGGTAGT-----------ATT--AA--ATA------A-GTGGTACATATGTACCA-TCTGCAATGAATTGTACTGCTCGTATTTCTG--------TTTTT-C-CTGA-------TAGG------TAATTA--GG-GTTGTTAGTCGGACCTGACGTTTAACAAAG---AA-AAAA-----A-CAGGTAT
gi|4 : ttAGGCTAGAACAAATCAACACTT-T--T---AAGTGTGAGTG-AGCGGTTAGGATCT-CGA-TGTTCTGATGGCA-------------------C--A--A---A--A-A------AGTA---TATTTCCG--GAATTTTC-CA-TCCG-AGTTTGTTCGTTAT-------AGAATCCGT------TGCACTCAAATCA-TG-AAAGGGCTA---TAAAAC-G-C-------T-G--TTACT-CTGACTA-G--T----ACTGTGT-T--G-CACCATA--TCTGCATGTT------TTGGACAT-TTAATCCTCATC-AAT--AATATTTGA-GATTGAAATT---A--AAA------A-GTGG--TGT------CA-TCTACATTAAATTGTaagc
gi|5 : aCATCCCTTGTCTT---A---GTCAGTGTGATCGTTAGGTTTTTCGAATGCCCTG-TGGCAAAA----AACAAA------C--AGTA---T--A-A-----CAGTAGTTCATT-------AATTT---CTGTCCC-TCACTG------AT-------ATTATTTATAT----TGCATC-AAATCATCT-AAGAAGCTTAATTGAATAAG-AC----T-T-T--TTACAACCGTCTGTT--CCATAAATTTAGGT--G-GACCAGAGACAGGTATGTG------TTGG-TAT-TTGATTCTCATC-AGT--GGTACTT-A-GGCTGAAATAA-AA--GAtgaca
gi|6 : GCCAGACAAGGTCATTTCTG-TGTT---AAGCG--GGCG-GCCGGGTTGGTTAT-CGA-TTCCC-GATGACAAAAC---AACAAAA-----C--A--A---GTTA-A-----CA------TATTTCCAATGTATCTTCTCT-GCTA-TTATTGTTCATTAT-------ATTATTCAT------ATCATCGAAATCA-------------------ATC-G-CC----T-TAT--TTATT-CGTACTGTGGGTCA--AATTTAC-TTCG-CACCAGA---ATGCGTGTTGAATGCTTCGATATATTGATCTGCATTAGGT--G
gi|7 : GTCAGTGTGATCGTTAGGTTTTTCGAATGCCCTG-TGGCAAAA----AACAAA------C--A--G---T--ATA-----CA-TG---TATTTCCT--TAATTT---CTGTCCC-TCACTGATCATTAT-------GTTAATAAT------TGCATCCAAATCA-CT-AAGAAGCTTAATTGAATA-GACC----T-T-T--TTACA-CCGACTGTT--CCA--AATTTAG-T--G-GACCAGA--CATG--TG--------TTGGATAT-TTGATTCTCATC-AGT--GGTtatagcttgg
gi|8 : tcccttgtcttaAAAA----AAAAAA------A--A--A---C--A-A-----CA-TA---TATTTCCG--GAATTT-C-CT----GATCA--GT--GTAGC-------ATTATTCAT------TGCATCCAAG-AA-CTTAAGACGCTA----AAATC-G-CC----A-T-T--T-ACT-TCT-CTA-----CA--AATT--G-T--GGCACC-----------TATT------TTAG------TGA----CAGA-GTT--GTTACTT-A-GGCTGAAATAA-AATAAAA------A-GTGG--CAT------CAACCTACAATGAGTTGTACAGCTCGTACTTTC
gi|9 : aAGGCCAGACCAAATCACTTCGT-TGTT---AAGCGTCAGCG-GGTGGTTAGGTTTC-CGA-TGCCCTGATGGCAAAA----AAAAAAAAAAGGCG-A--A---A--A-A-----AGGTA---TATTTCTG--GACATTTC-CG-CCTG-TCGTTGTTCGTTAT-------GTTATTCATTGCGCATGCATCTAAATCA-CC-ATGAAGCTG---TAAATC-G-CC----G-T-------------ATTGTG--TAA--AATTTAG-T--G-