lowQualScore : 2222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222 1111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 111 111 222222222 11111 33333333333333 11111 111111 11 111 1111 2222 1111 1111111 111 111111 55555555 1 111111 2222222 1111111 111111 1111 11111 1 1111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111 11 1 111 1 1 888888888888888888888888888888 1 1 11 22222222 1 1 4444444444 1 222 111 9999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999 222222222 22222222 11 44444444 1 1 111 1111111111 1 1 111 2 3333333 1 111 22 333333333 222 11 11 111 2222222 111 33333333333333333333 1 1 11111 11 111 1 333 22 1 11 1 11 1 1 22 11111 1 1 1 11 1 111 1 111 1 111 22222 11111 1111 2222 111 111111 11 11 11 11 11 11 11 11 111 22222222 11 1111 111 55555555555555555555555 111 11111 11111 11111
lowQualScore : 4 66 4 4 4 4 66 3 4 777 4 222 3 4 4 6 1 6 111 666666666 11111 88888888888888 6 33333 3 77 3 999999 55 1 000 5 2222 5 66 888 66 888 5555 5 3333 777 66 4444444 000 9999 66 777777 4 4 4 1 66666666 4 4 2 4 9999 5 5 5 666 66 777777 66 3333333 5 1111111 222222 3 6 4444 2 666 33333 3 8888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888 33 0 111 2 0 0 888888888888888888888888888888 3 3 88 66666666 0 3 3 8888888888 0 333 111 5555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555 222222222 00000000 33 22222222 0 2 0 0 777 0 8 0 5555555555 8 6 6 8 8 0 8 666 0 88 8 8888888 8 8 2 333 33 333333333 111 22 8 8 99 333 6666666 99 5 000 8 88888888888888888888 2 0 0 2 66666 33 111 0 444 00 0 7 33 3 0 33 3 5 0 55 3 88888 0 3 0 0 3 3 33 0 777 0 111 0 777 6 1 6 666 6 6 11111 66666 2 6 6 4444 0000 888 6 6 99 6 111 6 6 6 6 6 1 6 999999 0 11 8 11 11 11 11 11 8 8 8 11 11 1 111 66666666 6 11 6 4444 6 111 6 6 6 3 11111111111111111111111 99 6 6 1 111 99 66666 8 999 11111 4 2 66 777 4 4 4 11111 4 4 4 66 4
lowQualScore : . .. . . . . .. . . ... . ... . . . . . . ... ......... ..... .............. . ..... . .. . ...... .. . ... . .... . .. ... .. ... .... . .... ... .. ....... ... .... .. ...... . . . . ........ . . . . .... . . . ... .. ...... .. ....... . ....... ...... . . .... . ... ..... . ................................................................................................................ .. . ... . . . .............................. . . .. ........ . . . .......... . ... ... ...................................................................................................................... ......... ........ .. ........ . . . . ... . . . .......... . . . . . . . ... . .. . ....... . . . ... .. ......... ... .. . . .. ... ....... .. . ... . .................... . . . . ..... .. ... . ... .. . . .. . . .. . . . .. . ..... . . . . . . .. . ... . ... . ... . . . ... . . ..... ..... . . . .... .... ... . . .. . ... . . . . . . . ...... . .. . .. .. .. .. .. . . . .. .. . ... ........ . .. . .... . ... . . . . ....................... .. . . . ... .. ..... . ... ..... . . .. ... . . . ..... . . . .. .
lowQualScore : 4 11 4 4 4 4 11 9 4 888 4 222 3 4 4 7 0 7 777 777777777 88888 22222222222222 7 77777 5 77 2 444444 66 7 000 7 1111 7 99 888 99 888 6666 0 9999 888 11 4444444 999 4444 11 111111 4 4 4 9 22222222 4 4 2 4 4444 0 0 0 222 99 888888 99 1111111 7 7777777 111111 2 7 2222 5 888 55555 3 6666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666 88 0 000 5 0 0 888888888888888888888888888888 3 3 33 77777777 7 3 3 3333333333 0 000 000 8888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888 222222222 00000000 88 22222222 0 0 0 8 555 8 0 8 6666666666 0 0 0 0 0 8 0 000 0 88 0 0000000 0 0 8 000 88 000000000 000 00 0 0 88 888 0000000 22 0 000 0 44444444444444444444 5 0 0 0 88888 88 000 0 000 00 0 0 88 2 0 88 2 0 0 55 2 22222 0 2 0 0 2 2 88 0 000 0 000 0 000 7 7 7 888 7 7 88888 00000 5 7 7 2222 8888 333 7 7 22 7 777 7 7 7 7 7 0 7 222222 8 00 0 00 00 00 00 00 0 0 0 00 00 7 777 77777777 7 00 7 2222 7 777 7 7 7 5 22222222222222222222222 22 7 7 0 777 22 00000 9 000 11111 4 3 11 888 4 4 4 11111 4 4 4 11 4
consensus : CGAGGG-TTGT--CC-C-A-G-AA--AAACGCGAA-CAT---T-T---CANA-TAT-TTTT-TGTGA-AACT---TC---------TAG--T--ATAT------C--TTTATTAT-TTGG--T--ACACAA-CAAAATGAT------CAT-NTTC---TGA-AT----AT-C--G---CTG--TG---AAATTTTT---AATG-CATTTTGT----CTG---TAAAT--AACATT-------TT--TATCACA----CTTT--A---A--CCAG-TCT-TA-CATAT--TA-ATAG-CT-GCCGGCGC-A----ACGCTG-A-C-GA-C-GT--C-A----AAA--CG-T-AA--CT-TC-G--T--GA-TGT--CTGTTAAC-G----TCA-T-ATTCATT--TCTTCTC-AAAATAC-CG-TCC----------------AC------A-A-ACA--------------TTTCTC-A--T-ATC-GCT---TA-C-ATCC--A-TGCATT------------------AAAAA--CG-TT-T-CTGA-ACT-AAGAGATG---TCGG--AG---------ATT-----G-TG-AT-ACTT--CGC---GG---CGAATT-TC-AGC-TC-AC-G-TGAAATCTCT-TTCCTCA-CA-A-ATGATT-------TTTT----AAT---GCGTAGGA-G---------AGA-ATG--CAAGCA-T-CTAGTAT-GA-CG-TCC-AT-CACCCTC---------------AT---------------TTTTAA-GTTT---TTCG-TCTCT--TTTTG--TCG--G--TT-CT-ACCACGCACCT-CTTC---CATAG-GATTA---C-CA--CTCC-A-ATC-ATCCT-T-AAACCTTT-TG-G-GTCATGTGT-ATACC-AA--TAG--GTC-CGAGACACATG-TTTGT-GTCGTG-TCTA--T-----CGTTTN--CATCTCTCTTTTN-GT-TT-GAACA-GGGA--TCAAACCTC---GC-CTCCANACAGT-A-T-TGAA-----TTA---C--AA---TTCGGTGC-GCC-GCATTA-TCA-TC--CG-A-C-GTTGCCAN-TTTTTGAAAATTTCTAAC-GGAAG--GTGTTTGTAC-GT--ATAACG-TCAT-AAAAATGTTATT-T-ATGA-CGTCAT-TT-TATATAATTTTAT--ACTG-ACGTGT--TT-GT-T-AG-ACCAT--AACGC-TTTTA-TTGATATA-A-TTATATTT-AAAAT-AT---A-ACGTTTG--T--ANA-A-TAAAATATA----GAGCG---AA-A-TTT-CAAC-CG--AAG-TGC---TCTTTT-CGAACG-TGCAAAAAA-A-TCG-GTGCGC-CG------ATTACTGATATTTTGCACC--TTTTAAA-TGCC--GTT--TTCA--TA--TTT--GT-TTG-TGACC-AAAAC--CTT--AATATTTT---TT----G---TG-AAAATTACGATTATACCAT-C----CACT-A---ACA-ATAGG-C-AAAAT------------------TT--NGTA--AAG-TTT-GGTGAC---GT--AGTTT--A--TG-AAATAT-C-TA-----AA-ANG--T---T-CGC-G-TTTT-----TC-T-G-GG--AC-AACCCTCGTA
Reference ( gi|4 ) : CGAGGG-TTGT--CC-C-A-G-AA--AAACACGAA-CAT---T-T---TATA-TAT-TTTT-TGTGA-AACT---TC---------TAG--T--ATAT------C--TTTAGTAT-TTGG--T--ACATAA-CAAAATGAT------CAT-ATTC---TGA-AT----AT-C--G---CTG--TG---AAATTTT----AATG-CATTTTGT----CTG---TAAAT--AACATT-------TT--TATCACA----CTTT--A---A--CCAG-TCT-TA-CATATGATA-ATAG-CT-GCCGGGGC-A----ACGCTG-A-C-GA-C-GT--C-A----AAA--CG-T-AA--CT-TC-G--T--GA-TGT--CTGTTAAC-G----TCA-T-ATTCATT--TTTTCTC-AAAATAC-CG-TCC----------------A-------------A--------------TTTCTT-A--T-ATC-GCT---T--C-ATCC--A-TGCATT------------------AAAAA--CG-TT-T-CTGA-ACT-AAGAGATG---TCGG--AA---------ATT-----A-TG-AT-ACTT--CGC---GG---CGAATT-TC-AG--TC-AT-G-TAAAATCTCT-TTCCTCC-CA-A-ATGATT-------TTT-----AAT---GC--AGGA-A---------AGA-ATG--CAAAAA-T-CTAGTAT-GA-CG-TCC-AC-CACCTTC-------------TTAT---------------TTTTAA-GTTT---TTCG-TCTCT--TTTTG--TCA--G--T--CT-ACCACGCGCCT-CTTT---CATAG-GATTA---C-CA--CTCC-A-ATC-ATCCT-T-AAACCTTT-TG-G-GTCATCTGT-ATACC-AA--T----GTC-CGAGACACATG-TTCGT-GACGT--TCTA--T-----CGTTTA--CATCTCTCTTTTT-GT-TT-GAATT-GGGG--CCAAACCTC---G--TTCCAAACAGT-A-T-TGAA-----TTA---C--AA---TTCGGTGC-GCC-GCATCA-TCA-TC--CG-A-C-GTTGCC-T-TTTTTAAAAATTTCTAAC-GGAAA--GTGTTTGTAC-GT--ATAAAG-TCAT-AAAAATGTTATT-T-ATGA-CGTCAT-TT-TATATAATTTTAT--ATTG-ACATGT--TT-GT-T-AG-ACCAT--AACAC-TTTTA-TTGATATA-A-TTATATTT-AAAAT-AT---A-ATGTTTG--T--ACA-A-TAAAATATA----GAGCA---AA-A-TTT-CAAC-CG--AAG-TGC---TCTTTT-CGAACG-TGCAAAAAA-A-TCG-GTGCGC-CG------ATTACTGATATTTTGCACC--TTTTAAA-TGCC--GTT--TTCA--TA--TTT--GT-TTG-TAACC-AAAAC--CTT--GATATTTT---TT----G---TG-AAAATTACGATTATACCAT-C----CACT-A---ACA-ATAGG-C-AAAAT------------------TT--AGTA--AAG-TTT-GGTGAC---GT--AGTTT--A--TG-AAATAT-C-TA-----AA-AAG--T---T-CGC-G-TTTT-----TC-T-G-GG--AC-AACCCTCGTA
gi|3 : CGAGAG-TTGT--CC-C-A-G-AA--AAACACGAA-CAT---T-T---TATG-TAT-TTTT-TGTGA-AACT---TC---------TAG--T---TAT------TCTTTTATTAT-TTGG--TGTACACAA-CAAAATG-T------CAT-TATC---TGA-AT----AT-C--G---CTGGCTG---AAATTTTT---AATG-CATTTTGT----CTG---TAAAT--A-CATT-------TT---ATCACA----CTTT--A---AACCCAG-TCT-TA-CATA------A-AG-CT-GCCGGCGC-A----ACGCTG-A-C-GA-C-GT--C-A----AA--------------------------------------AC-G----TAA-C-ATTCATT--TTTTCTC-AAA-TAC-CGCTCC----------------A-------------AATTGTGGAAAAACATTTCTTTA--T-ATC-GCT---T--C-ATCCCTACTGCATT------------------AAAAA--CGGTTGT-CTGATACT-AAGAGATG---TCGG--AA---------ATT-----G-TG-ATTACTT--CGC---GG---CGAATTCTC-AGCTTC-AC-GGTAAAATCCCT-TTCCTCA-CA-A-ATTATT-------T-------AATATCGC--AGGA-A---------AGA-ATGGCCAAACA-T-CTAGTATTGA-CG-TCC-AT-CACCCT----------------AT---------------TTTTAA-GTTT---TTCG-TCTCT--TTTTG--TCA--G--TT-CT-ACCACGCGCCT-CTTT---TATAG-G-TTA---C-CA--CTCC-A-TTCAATCCT-T-AAACCTTT-TG-G-GTCATGTGT-ATACC-AAATT----GTC-CGAGACACATGTTTTGTGGACGTG-TCTA--T-----CGTTTA--CATCTTTCTTTTT-GT-TT--AATTGGGGG--CCAAACCTC---GC-CTCCAAACAGT-A-T-TGAA------TA---CCAAA---TTCGGTGC-GCC-GCATCA--CATTC--CG-A-CTGTTGCCAT-TTTTTGAAAATTTCTAACGGGAAG--GTGTTTGTAC-GT--AAAACGTTCATAAAAAATCTTATT-TAATGA-CGTCAT-TTATAT-TAATTTTAT--ATTG-ACATGT--TTGGT-T-AG-ACCAT--AACAC-TTTCATTTGATATA-A-TTATATTTAAAAAT-AT---A-ATGTTTGC-T--ACATA-TAAAAAATAATCGGAGCC---AA-ATTTT-CAAC-CG--AAGTTGC---TCTTTT-CGAAC--TGC-AAAAA-A-TCG-GTGCGC-CG------ATTACTGATATTTTGCGGCTTTTTTAAA-TGCC--GTT--TTCA--TA--TTTTGGT-TTGTTAACC-AAAAC--CTT--GATATTTT---TT----GC--TG-AAAATTACGATTATACCATCC----CACT-A---ACA-ATAGG-CAAAAAT------------------TT--TGTA--AG---TT-GGTGAC---GT--AGTTT--A--TGAAAATAT-C-TA-----AATAAGTTT---T-CGC-GTTTTT-----TC-T-GTGG--ACAAACCCTCGT
gi|3 : aCGAGGGTTTGT--CCAC-A-GAAA--AAACGCGAA-AACTTAT-T---TAGA-TAT-TTT
gi|1 : acgagagttgtcccagaaaaacacgaacattttatgtattttttgtgaaacttctagttattcttttattatttggtgtacacaacaaaatgtcattatctgaatatcgctggctgaaatttttaatgcattttgtctgtaaatacattttatcacactttaaacccagtcttacataaagctgccggcgcaacgctgacgacgtcaaaacgtaacattcattttttctcaaataccgctccaaattgtggaaaaacatttctttatatcgcttcatccctactgcattaaaaacggttgtctgatactaagagatgtcggaaattgtgattacttcgcggcgaattctcagcttcacggtaaaatccctttcctcacaaattatttaatatcgcaggaaagaatggccaaacatctagtattgacgtccatcaccctatttttaagtttttcgtctctttttgtcagttctaccacgcgcctcttttataggttaccactccattcaatccttaaaccttttgggtcatgtgtataccaaattgtccgagacacatgttttgtggacgtgtctatcgtttacatctttctttttgtttaattgggggccaaacctcgcctccaaacagtattgaataccaaattcggtgcgccgcatcacattccgactgttgccattttttgaaaatttctaacgggaaggtgtttgtacgtaaaacgttcataaaaaatcttatttaatgacgtcatttatattaattttatattgacatgtttggttagaccataacactttcatttgatataattatatttaaaaatataatgtttgctacatataaaaaataatcggagccaaattttcaaccgaagttgctcttttcgaactgcaaaaaatcggtgcgccgattactgatattttgcggcttttttaaatgccgttttcatattttggtttgttaaccaaaaccttgatattttttgctgaaaattacgattataccatcccactaacaataggcaaaaattttgtaagttggtgacgtagtttatgCGAGGG-TTGT--CC-C-A-G-AA--A---TCGAA-CTT---T-T---TAGA-TAT-TTTA-T---A-AACTACGTCACCAAACGTTAC--T--ATAT------T--T---GCCT-ATGT--T--ACATGA-TGATATAAT------CGT-At
gi|2 : gagggttgtgtcccatgaacaacgcgaacgtttgctcataatatatttcggtaatagcttctaattcatacactcgactatattgcttgggctacacaggcaaaatgattcatttctgaattcgctgtgaaatttttaatggcattctgtctgtaataaattttttatcacactttcaaactaggtcttacataataatcgactaccgcgcaacgttgacgagcgtttcaaaagtcgtgagctatcgaatgatgtctgttaacgtatcattcattccttctccaaaatattcgtcctcactatgtgacgaacacatttatcatgatcagctaaaccgagccagctttaataacatttctaagtaagagataagtttggtaagattggtggatacttcgcgggcgcaagtttcagttgacttgaaatctctttcctaaacaaatgatttttttgttgatgcgagggacaaggaaagcattgaggtcccattcacccagatttttaaagtttatcgtctttttgtcactgttctaccaagcacctcctccatagcgattaccactcccaaccatccttaacctttgtgtgccagtgtatacctaataggtcgcgagacacatgtttgttcatttccaactcgtattcatctctctttaagtattgaacagcgatcaaaccttgcatcccagagtaattggaaaaggttgagctaatttcgtgcgccagcattatatcgccgatcgttgccattttaaaattgttaacgggaatggtgtgtgtacgtttataacgccataaaaatgttatttatgacgtcattatatataatttattgattggacatatggttgttgagaccatccaacgctttattgatttaattatattaagaatagcgaacatgtttgtgaaataaaatgaagagcgaatatttcagccgaagtgctctttttcgaacggtgaaagaaagatcgtgcgtcggttactgtattttgcaccttttaaatgccgttttcataattttgtttgtgatcaaaaccttaatgatttttgtgtaaaatCGAGGT-ATAT--CC-C-A-G-AAGAAAATGCGAAACAG---TGT---CGCA-TAT-TATTATGTTT-AACT---TT---------TAAGCC--ATAT------CA-TTT--TATGTTGG--T--ACACAA--AAAATGATTTTTATCATTGTTC---T-A-AT----AT-CAAG---CTG--TG---AAATTTTT---AAGG-AGTTTTGTA---CTG---TAAAT--AACGTT-------TTATTATCACA----CTTC--A---AT-CCAG-TCG-T--CACATTATAGAAAG-CTAGCCGCTGC-ACAAAAAGCTGCATC-GA---GT--CGA----AAA--CG-T-AAAATT-TC-G--T--GA-TGG--CCGT-----G----CCACT-ATGC----------TG-ACAA-AC-------------------------------------A--------------TTTCTC-ACAT-ATC-GCT---GA-C-ACCC--A-TGCATG------------------AAAAAAACA-CT-TACTGA-ACTCAAGAGATG-----GG--AGCGAGTAACGATTGTCATA-TG-AT-ACTTGCCGCTGTGG---CAAATT-TCGAGC-TC-ATTG-TGAAATCTCT-TTCCTCA-CA-AGATGATT-------TTTTA---AGC---GCGTAGGATA---------AGA-TTG--CAAG---T-CTAGTAT--A-CGGTTC-AT-CATCCGC---------------AT---------------TTTTAA-A--------CG-T---T--TTTTG--TCG--GATT--TT-ACCGCGCACCT-CTTC---CA-AG-GATTATGTC-CAGTTTTC-A-ATCCATCCTAT-AAATCTTT-TGTG-AGCATGGTT-ATGCC-AG--TAGGTGTC-CGAGACACATG-TTTGT-GTCGTGATCT---T-----CGTTTC--CATCTCTCTTTTA-GT-TTAGAACA-GGGG--TCAAACCTTACGG--CTCCACACAGTGA-T-TGAA-----T-A---C--AGAGGGTCGGT-C-GCC-GCCTTA-TCA-TC--CG-A-C-GTTTCCATGTTTTTGAAAATTTCTAAC-GGAAA--GGTTTTGTACGGT--ATAACG-TCAT--AAAATG-TATTAT-A-GA-CGTCATATT-TATATAAGTGTAT--ACTG-ATGTGT--TG-GTGT-AT-GCCAT---ACAC-TTTTA-TCTATATAGA-TAGTATTT-AAAACGAT------CGTTGGGATTAACA-ATTAAAATGT-----GATCAGACAA-C-TTTGCAAA-CAATAAA-CGCTTGTTCTTT-CAGACG-TGCAAAGAA-ATTCGAGTTGGC-CGACCGTAATTACTGATATTGTGCACT--TTTTAAAGTACCCGGGTAATTCACCTA--TTT--GTGTTG-TGACC-AAAGTCACTT--AAGATTTTGTCTTGTTAG---TG-AAAATTGCG-TTAT--CAT-C----CATTAA---ACA-ATAGG-C-AAAAT------------------ATGAAGTA--AAGATTTGGGTGA----GTTGAGTGT--GATTG-ACATAT-C-TA-----GA-AAT--T---TGCGT-G-TTTT-----TC-TGG-GG--AC-ACCCta
gi|7 : CGAGGG-TTGT--CC-C-T-G-AA--AAACGCGAA-CTT---T-T---TAGA-TAT-TT
gi|6 : ttttattgatataattatatttaaaatattatgtttgtacaataaaatatagaccaaaatttcaaccgaagtgctcttttcgaacgtgcaaaaaaatcggtgtgccgattactgatattttgcaccttttaaatgccgttttcatatttgtttgtaaccaaaaccttaatattttttgtgaaaattactattataccatccactaacaataggcaaatttttgtaaagtttggtgacgtagtttatgCGAGGG-TTGT--CC-C-A-G-AA--AAACGCGAA-CAT---T-T---CATA-TAT-TTTT-TGTGA-AACT---TC---------TAG--T--ATAT------C--ATTATTAT-TTGA--A--ACACAA-CAAAATGAT------CAT-TTTC---TGA-ATATCGAT-C--G---CTG--TG---AAATTTT----ACTG-CATTTTGT----CTG---TAAAT-----ACT-------TT--TATCACA----CTTT--A---A--CCAG-TCT-TA-C-T-------ATAG-CT-GCCGGCGC-A----ACGCTG-A-C-G--C-AT--C------AAA--CG-TAAA--CT-TC-G--T--GA---T--TTGTTAACGG----TCA-T-A-TCATCTGTTTTCTC-AAAATA--CG-TCC----------------ATATGAGAAAATACA--------------TTCC---A--T-ATC-GCT---TACC-ATNN--N-NNNNNNNNNNNNNNNNNNNNNNAAAAAAA--CG-TT-T-CTGA-ACT-AAGAGATG---Tta
gi|10 : taCGAGGG-TTGT--CC-C-A-G-AA--AAACGCGAA-CAT---T-T---CATA-TAT-TTTT-TGTGA-AACT---TC---------TAG--T--ATAT------C--TTTATTAT-TTGA--T--ACACAA-CAAAATGAT------CAT-TTTC---TGA-AT----AT-C--G---CTG--TA---AAATTTT----AATG-CATTTTGT----CTG---TAAAT--AACATT-------CT--TATCACA----TTTT--G---A--CCAG-TCT-TA-C-----ATA-ATAG-CT-GCCGGCGC-A----Ag
gi|1 : taGAGGG-TTGTGTCC-C-ATG-AA--CAACGCGAA-CGT---T-TGCTCATAATATATTTC-GGTAATAGCT---TC---------TAA--TTCATACACTCGAC--TATATTGC-TTGGGCT--ACACAGGCAAAATGATT-----CAT--TTC---TGA-AT-----T-C--G---CTG--TG---AAATTTTT---AATGGCATTCTGT----CTG---TAA-T--AAATTT-------TT--TATCACA----CTTTCAA---A--CTAGGTCT-TA-CATA--ATA-ATCGACT-ACCGCG-C-A----ACGTTG-A-C-GAGC-GTTTC-A----AAAGTCG-T-GAG-CTATC-GAAT--GA-TGT--CTGTTAAC-G----T-A-TCATTCATT--CCTTCTCCAAAATATTCG-TCCTCACTATGTGACGAACAC------------A--------------TTTATC-A--TGATCAGCTAAAC--CGAGCC--A--GCTTT------------------AATAA--CA-TT-T-CT-A-AGT-AAGAGATAAGTTTGGTAAG---------ATT-----GGTGGAT-ACTT--CGC---GGGCGCAAGTT-TC-AG--TTGAC-T-TGAAATCTCT-TTCCTAAACA-A-ATGATT-------TTTTTGTTGAT---GC--GAGG-G---------ACA-AGG--AAAGCA-T-------T-GA-GG-TCCCATTCACC--C-------------AGAT---------------TTTTAAAGTTT---ATCG-TCT----TTTTG--TCACTG--TT-CT-ACCAAGCACCT-CCTC---CATAGCGATTA---C-CA--CTCCCA-ACC-ATCCT-T-AA-CCTTTGTG-T-GCCAG-TGT-ATACCTAA--TAG--GTCGCGAGACACATG-TTTGT-TCATT--TCCAACT-----CGTATT--CATCTCTCTTTAA-GTATT-GAACA-GCGA--TCAAACCTT---GCATCCCAGA--GT-AAT-TGGAAAAGGTTGAGCT--AA---TTTCGTGC-GCCAGCATTA-T-A-TCGCCG-ATC-GTTGCC-A-TTTT--AAAATTGTTAAC-GGGAATGGTGTGTGTAC-GTTTATAACG-CCAT-AAAAATGTTATT-T-ATGA-CGTCAT-TA-TATATAATTT-ATTGATTGGACATATGGTT-GT-TGAG-ACCATCCAACGC-TTT-A-TTGATTTA-A-TTATATTA-AGAAT-AGCGAACATGTTTG--T--GAA-A-TAAAATGAA----GAGCG---AATA-TTT-CAGC-CG--AAG-TGC---TCTTTTTCGAACGGTGAAAGAAAGA-TCG--TGCGT-CG------GTTACTG-TATTTTGCACC--TTTTAAA-TGCC--GTT--TTCA--TAATTTT--GT-TTG-TGATC-AAAAC--CTT--AATGATTT---TT----G---TGTAAAATTACGATTATATCAT-C----ATGT-A---ACA--TAGG-C-AAA-T------------------AT--AGTA--ACG-TTT-GGTGAC---GT--AGTTT--A--TA-AAATAT-C-TA-----AA-AAG--T---T-CGA-----TT-----TC-T-G-GG--AC-AACCCTCGTA
gi|2 : GG-GTGT--CC-CCA-G-AA--AAACACGCA-AAT---T-TC--TAGA-TAT-
gi|9 : cgaggtatatcccagaagaaaatgcgaaacagtgtcgcatattattatgtttaacttttaagccatatcattttatgttggtacacaaaaaatgatttttatcattgttctaatatcaagctgtgaaatttttaaggagttttgtactgtaaataacgttttattatcacacttcaatccagtcgtcacattatagaaagctagccgctgcacaaaaagctgcatcgagtcgaaaacgtaaaatttcgtgatggccgtgccactatgctgacaaacatttctcacatatcgctgacacccatgcatgaaaaaaacacttactgaactcaagagatgggagcgagtaacgattgtcatatgatacttgccgctgtggcaaatttcgagctcattgtgaaatctctttcctcacaagatgattttttaagcgcgtaggataagattgcaagtctagtatacggttcatcatccgcatttttaaacgttttttgtcggattttaccgcgcacctcttccaaggattatgtccagttttcaatccatcctataaatcttttgtgagcatggttatgccagtaggtgtccgagacacatgtttgtgtcgtgatcttcgtttccatctctcttttagtttagaacaggggtcaaaccttacggctccacacagtgattgaatacagagggtcggtcgccgccttatcatccgacgtttccatgtttttgaaaatttctaacggaaaggttttgtacggtataacgtcataaaatgtattatagacgtcatatttatataagtgtatactgatgtgttggtgtatgccatacacttttatctatatagatagtatttaaaacgatcgttgggattaacaattaaaatgtgatcagacaactttgcaaacaataaacgcttgttctttcagacgtgcaaagaaattcgagttggccgaccgtaattactgatattgtgcactttttaaagtacccgggtaattcacctatttgtgttgtgaccaaagtcacttaagattttgtcttgttagtgaaaattgcgttatcatccattaaacaataggcaaaatatgaagtaaagatttgggtgagttgagtgtgattgacAAAATG----------T-AT-C---TGG-AC----AT-A--GTCCCTG--TGCCAAAAGTTTGTTCAATG---TCTTGTAGTCCTGAGTCAAATTTAACATTATCATTATT--TATCACAGTTTCTTT--ATATG--CCAT-TCTCTT-CACAT---A-ATAG-CT-G-CGGCGCTA----ACTCTG-A-CGGA-CTGC--CAA----AAA--CG-T-AAT-TT-TC-A--TTCGATTGCTACTGTTAAC-GAAGTCCA-T-ATTTATA--TCTTCTCTAAAAT
gi|11 : AGTGAT------CAT-GTACACATGACAT----ACGC--G---CT---TG---GTACTGT----ACTG-CATC---------------GAAT--AACATT-------TT---ATCACA----CTTT--A---AACCCAG-TCT-TATCATAT--TG---AG-CC-TCCGGCGC-A----ACGCAG-A-G-GA-C-GA--C-ATAATAAA--GGCT-AG--CT-TCGG--T--GA-TGT--
gi|13 : agttttagatatccctgttgagaaccagc--G---CTG--TG---AAAGTTT----TATG-CATTTAGT----CTG---TAAAT--AACATT-------TT--AAACACA----CTTT--A---A--CCAG-TCT-TA-CATAT------TAG-AT-GCCGGCGC-A----ACGCTG-A-C-GA-C-GT--C-A----AAA--CG-
gi|12 : TGT----CTG---TTAAT--AACATT-------TT--TATCACA----CTTC--A---A--CTAG-TCT-TA-CATA------ATAA-CT-ACCGGCGC-A----ACGTTG-A-C-GA-C-GT--C-A----AAA--CG-G-AG--CT-TC-G--T--GA-TGT--CTGTTAAC-G----TCA-T-ATTCATT--CCTTCTC-AAAATAT-CG-TCC----------------ACTATGTGACAAACA--------------TTTATC-A--T-ATC-GCT---
gi|5 : AAAACTTCTGTTCCCTT-CACA-ATGATTGTGTTTTTTT-----AAT---GCGTAGCA-GCTATATAATAGATATG--CAAAAAATGCTAGTAT-GACCG-TTC--T-TATCTTCACAGGTTTTAAGGTTATGCCGTTTCTCTGCCTTTTTAA-GTTTTGGTTCGTTCTCTAATTTTGATTCG--G--TTCCTCACCACGCACCTACGTTCCGCATAA-GATTA---T-CT--CACC-ACACC-ATCCT-TGAAACTTTT-TA-GTGTCATGTGTAATACC-AA--TA---GTC-CGAGACACATG-TT-GT-GTCGT--TCTA--TGATTGCTTTTGTTCATCTTTCTTTTTAGT-TT-GAATA-GAGATTTCAAA-CTC---G--CTCC--ACAGC-G-TATGCA-----TTA---C--AA----TCGTTGCTGCC-GCATTAGTCA-TC--TGAA-C-GTTGCC-A-TTTTT-GAAATTTCTAAC-AG-AG--GTG-TTGTAC-GT--AT-ACG-TCAT--AAAATGTTATT-T-TAGAGTATC-T-TT-TATATAATTTTAT--ACTG-ACAAG---TT-GT-T-AGAACCCT--AACGCTTTTTA-TTGCTACG-ATTTATATTT-AAAAT-AT---A-ATGTTTG--T--AAA-A-T-AAATATA----GAGCGC--AA-A-TTT-TAACGCG--AAG-TGC----CTTTT--GAACG-TGCAAAAAA-A-TCG-GTGCGTGCG------AT
gi|14 : ATAG-GATCG---CGCA---TCG-ATATC-ATCCT-T-AAACCTTT-TG-T-GTCATGTG--ATACC-AA--T----GTC-CGAGACACATG-TTTGT-Ggggttctatctaatgaatagaattgctcctttgccaggcggaggaagtggcactattattaaaaaaaattgcctgttcattttttctcccccaatattcttcgtttggtcagacccgattaaccattacatgatttatttttttatttaaaaattacgattattatcgacatactatagacgtataggtcgaaatacaaggcgaatatcaactttggtacaaagtgtgtgactgcgtagttttaatgtaaaaatcgtaaaaagtggatcgccgttttttttttctgggacacccttatacagctaaaatat
gi|15 : -GT-TT-GAACA-GGGA--TCAAACCTT---G--CTCCACAGAGT-A-T-TGAA-----TTA---C--AA---Ttc
gi|7 : -TTTTA-TTGATATA-A-TTATATTT-AAAAT-AT---T-ATGTTTG--T--ACA-A-TAAAATATA----GACCA---AA-A-TTT-CAAC-CG--AAG-TGC---TCTTTT-CGAACG-TGCAAAAAA-A-TCG-GTGTGC-CG------ATTACTGATATTTTGCACC--TTTTAAA-TGCC--GTT--TTCA--TA--TTT--GT-TTG-TAACC-AAAAC--CTT--AATATTTT---TT----G---TG-AAAATTACTATTATACCAT-C----CACT-A---ACA-ATAGG-C-AAATT------------------TT--TGTA--AAG-TTT-GGTGAC---GT--AGTTT--A--TG-AAATAT-C-TA-----AA-AAG--T---T-CGC-G-TTTT-----TC-A-G-GG--AC-AACCCTCGTA
gi|8 : -TTTTA-TTGATATA-G-TTATATTT-AAAAT-AC---A-ACGTTTG--T--GAA-A-TAAAATATA----GAGCG---AA-A-TTT-CAAC-CG--AAG-TGC---TCTTTT-CGAACG-TGCAAAAAA-A-TCG-GTGGGC-CG------ATTACTGATATTTTGCACC--TTTTAAA-TGCC--GTT--TTCA--TA--TTT--GT-TTG-TGACCAAAAAC--CTTAAGAT-TTTT---TT----G---TG-AAAATTACGATTATATCAT-C----CATT-A---ACA-ATCGT-C-AAAAT------------------TT--AGTA--AAG-TTT-GATGAC---GT--AGTT
gi|5 : TATTTT---TT----TATTTA-AAAATTACGATTAT--TAT-CGACATACT-ATAGACGTATAGGTC-GAAATACAAGGCGAATATCAACTTT--GGTACAAAG-TGT-G-TGACTGCGT--AGTTTTAA--TGTAAAAAT-CGTA-----AA-AAG--TGGAT-CGCCG-TTTTTTTTTTC-T-G-GG--AC--ACCCTTATA
gi|1 : aaaacttctgttcccttcacaatgattgtgtttttttaatgcgtagcagctatataatagatatgcaaaaaatgctagtatgaccgttcttatcttcacaggttttaaggttatgccgtttctctgcctttttaagttttggttcgttctctaattttgattcggttcctcaccacgcacctacgttccgcataagattatctcaccacaccatccttgaaactttttagtgtcatgtgtaataccaatagtccgagacacatgttgtgtcgttctatgattgcttttgttcatctttctttttagtttgaatagagatttcaaactcgctccacagcgtatgcattacaatcgttgctgccgcattagtcatctgaacgttgccatttttgaaatttctaacagaggtgttgtacgtatacgtcataaaatgttattttagagtatcttttatataattttatactgacaagttgttagaaccctaacgctttttattgctacgatttatatttaaaatataatgtttgtaaaataaatatagagcgcaaattttaacgcgaagtgccttttgaacgtgcaaaaaaatcggtgcgtgcgatgggttctatctaatgaatagaattgctcctttgccaggcggaggaagtggcactattattaaaaaaaattgcctgttcattttttctcccccaatattcttcgtttggtcagacccgattaaccattacatgattG-AAATATAT-TATGAGCAA-ACG--T---T-CGC-G-TTGT-----TCAT-G-GGACAC-AACCCTCcagctaaaatat
gi|3 : -AAATAC-A-TA-----AA-ATG--T---T-CGT-G-TTTT-----TC-T-G-GG--AC-AACTCTCGTggtaatagcttctaattcatacactcgactatattgcttgggctacacaggcaaaatgattcatttctgaattcgctgtgaaatttttaatggcattctgtctgtaataaattttttatcacactttcaaactaggtcttacataataatcgactaccgcgcaacgttgacgagcgtttcaaaagtcgtgagctatcgaatgatgtctgttaacgtatcattcattccttctccaaaatattcgtcctcactatgtgacgaacacatttatcatgatcagctaaaccgagccagctttaataacatttctaagtaagagataagtttggtaagattggtggatacttcgcgggcgcaagtttcagttgacttgaaatctctttcctaaacaaatgatttttttgttgatgcgagggacaaggaaagcattgaggtcccattcacccagatttttaaagtttatcgtctttttgtcactgttctaccaagcacctcctccatagcgattaccactcccaaccatccttaacctttgtgtgccagtgtatacctaataggtcgcgagacacatgtttgttcatttccaactcgtattcatctctctttaagtattgaacagcgatcaaaccttgcatcccagagtaattggaaaaggttgagctaatttcgtgcgccagcattatatcgccgatcgttgccattttaaaattgttaacgggaatggtgtgtgtacgtttataacgccataaaaatgttatttatgacgtcattatatataatttattgattggacatatggttgttgagaccatccaacgctttattgatttaattatattaagaatagcgaacatgtttgtgaaataaaatgaagagcgaatatttcagccgaagtgctctttttcgaacggtgaaagaaagatcgtgcgtcggttactgtattttgcaccttttaaatgccgttttcataattttgtttgtgatcaaaaccttaatgatttttgtgtaaaattacgattatatcatcatgtaacataggcaaatatagtaacgtttggtgacgtagtttataaaatatctaaaaagttcgatttctgggacaaccctcgta
gi|6 : -AAATAT-A-TG-----AA-ATG--T---T-CGC-G-TTTT-----TC-T-G-GG--AC-AACCCTCGTAtttgtgaaacttctagttattcttttattatttggtgtacacaacaaaatgtcattatctgaatatcgctggctgaaatttttaatgcattttgtctgtaaatacattttatcacactttaaacccagtcttacataaagctgccggcgcaacgctgacgacgtcaaaacgtaacattcattttttctcaaataccgctccaaattgtggaaaaacatttctttatatcgcttcatccctactgcattaaaaacggttgtctgatactaagagatgtcggaaattgtgattacttcgcggcgaattctcagcttcacggtaaaatccctttcctcacaaattatttaatatcgcaggaaagaatggccaaacatctagtattgacgtccatcaccctatttttaagtttttcgtctctttttgtcagttctaccacgcgcctcttttataggttaccactccattcaatccttaaaccttttgggtcatgtgtataccaaattgtccgagacacatgttttgtggacgtgtctatcgtttacatctttctttttgtttaattgggggccaaacctcgcctccaaacagtattgaataccaaattcggtgcgccgcatcacattccgactgttgccattttttgaaaatttctaacgggaaggtgtttgtacgtaaaacgttcataaaaaatcttatttaatgacgtcatttatattaattttatattgacatgtttggttagaccataacactttcatttgatataattatatttaaaaatataatgtttgctacatataaaaaataatcggagccaaattttcaaccgaagttgctcttttcgaactgcaaaaaatcggtgcgccgattactgatattttgcggcttttttaaatgccgttttcatattttggtttgttaaccaaaaccttgatattttttgctgaaaattacgattataccatcccactaacaataggcaaaaattttgtaagttggtgacgtagtttatgaaaatatctaaataagttttcgcgttttttctgtggacaaaccctcgt
gi|10 : -AAATAT-A-TG-----AA-ATG--T---T-CGC-G-TTTT-----TC-T-G-GG--AC-AACCCTCGTAtttgtgaaacttctagtatatcattattatttgaaacacaacaaaatgatcattttctgaatatcgatcgctgtgaaattttactgcattttgtctgtaaatacttttatcacactttaaccagtcttactatagctgccggcgcaacgctgacgcatcaaacgtaaacttcgtgatttgttaacggtcatatcatctgttttctcaaaatacgtccatatgagaaaatacattccatatcgcttaccatnnnnnnnnnnnnnnnnnnnnnnnnnaaaaaaacgtttctgaactaagagatgtg
1 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|16 ): ATTGAAATAGTACTAATGAAAACTAAAGTGAAGTA
Alignments
lowQualScore : 111 11111 222222222 11111 222222 1111 1111 1111 1111 1111111 11 3333333 111111 11 11 111111111 1 11 8888888888888888888888 111111 3333 11111 555555555555555555 11 11111 4444444444444 2222222 1 1 11 111 111 1 1 1 111 11 222222 11111 444444444444 1111 1 1111 1111 111 1111111 11 11 11 111 111 1 1 111 11 111 22 111 2222222 11 222222222222222222 11 1 111 11111 11 11 111 111 1111111 11 1111 111 111111 111 22222222 1111 111 444444444444444444 111 11111 1 111111 111 11111
lowQualScore : 99 6 99 6 6 111 1 6 6 6 6 11111 111111111 6 33333 6 555555 2222 2222 66 888 66 0000 6 66 0 5 3333 777 55 3333333 888 8888 55 777 55 4 4 4 4 0000000 3 4 4 55 4 66 4 4 555 4 66 000000 00 4 5 11 5 5 7777777 777777 1 5 333333333 1 888 0 1 00 6 7777777777777777777777 111111 6 99 6 6 0000 8 44444 999999999999999999 11 8 8 8 8 8 55555 2222222222222 6666666 0 0 33 777 777 0 0 6 0 666 8 11 8 88 0 333333 77777 8 8 8 000000000000 8 4444 0 8 8 8 8 0000 7777 111 6 3 9999999 9999999 11 11 8 0 11 8 8 99 6 111 6 000 6 3 3 6 6 6 111 6 6 44 99 6 1 111 33 111 6666666 1 77 6 6 99 99 66 1 2 6 6 444444444444444444 0 8 8 88 8 11 6 8 777 0 0 8 33333 0 8 11 0 8 88 0 0 0 8888 8 999 8 0 11 8 2 111 8 8 8 8 111 5 0 5 5 5 5 5 1111111 33 77 1 5 5 2222 999 5 5 5 77 5 77 5 000 5 5 5 5 5 5 666666 99 6 99 99 99 99 99 6 6 6 99 5 000 11111111 5 66 5 2222 5 000 5 5 5 1 222222222222222222 888 77 5 5 000 77 11111 3 6 6 1 111111 6 111 66666 6 6 6
lowQualScore : .. . .. . . ... . . . . . ..... ......... . ..... . ...... .... .... .. ... .. .... . .. . . .... ... .. ....... ... .... .. ... .. . . . . ....... . . . .. . .. . . ... . .. ...... .. . . .. . . ....... ...... . . ......... . ... . . .. . ...................... ...... . .. . . .... . ..... .................. .. . . . . . ..... ............. ....... . . .. ... ... . . . . ... . .. . .. . ...... ..... . . . ............ . .... . . . . . .... .... ... . . ....... ....... .. .. . . .. . . .. . ... . ... . . . . . . ... . . .. .. . . ... .. ... ....... . .. . . .. .. .. . . . . .................. . . . .. . .. . . ... . . . ..... . . .. . . .. . . . .... . ... . . .. . . ... . . . . ... . . . . . . . ....... .. .. . . . .... ... . . . .. . .. . ... . . . . . . ...... .. . .. .. .. .. .. . . . .. . ... ........ . .. . .... . ... . . . . .................. ... .. . . ... .. ..... . . . . ...... . ... ..... . . .
lowQualScore : 22 7 22 7 7 777 0 7 7 7 7 88888 000000000 7 77777 7 888888 7777 1111 99 888 99 6666 2 99 1 0 9999 888 55 0000000 999 5555 55 000 00 0 0 0 0 2222222 4 0 0 55 0 11 4 4 333 4 11 333333 66 4 0 99 0 0 9999999 111111 4 7 111111111 4 111 4 4 33 7 8888888888888888888888 888888 7 22 7 7 6666 0 88888 000000000000000000 00 0 0 0 0 0 00000 8888888888888 0000000 0 0 88 555 555 0 0 5 0 222 0 00 0 88 8 000000 88888 0 0 6 444444444444 0 0000 0 0 0 0 0 8888 0000 777 7 2 5555555 3333333 00 00 0 8 00 0 0 22 7 777 7 222 7 3 3 7 7 7 777 7 7 22 22 7 7 777 00 888 0000000 0 77 7 7 22 22 00 0 5 7 7 777777777777777777 8 0 0 88 0 00 0 0 666 8 8 0 88888 8 0 00 8 0 88 8 8 8 4444 0 666 0 8 00 0 8 888 0 0 0 0 888 7 1 7 7 7 7 7 0000000 66 99 0 7 7 1111 666 7 7 7 99 7 99 7 000 7 7 7 7 7 7 444444 22 7 22 22 22 22 22 7 7 7 22 7 000 44444444 7 77 7 1111 7 000 7 7 7 7 111111111111111111 999 99 7 7 000 99 88888 3 7 7 0 888888 7 777 77777 7 7 7
consensus : CGAGGGTTGT--CCCA-GAA--AAACGCGAA-CATT-T---CATA-TAT-TTTT-TGTGA-AACTTCTAG--T--ATAT------C--TTTATTAT-TTGG--T--ACACAA-CAAAATGAT------CATT-T-TCTGAAT----ATC--G---CTG--TG----AAATTT--TTAATG-CATTTTGT----CTG---TAAAT--AACATT-------TT--TATCACA----CTTT--A---A--CCAG-TC-T-TA-CAT-AT--TAATAG-CT-GCCG--GCGC-AAC--GCTG-A-CG-A-C-GT--C-A----AAA--CG-T-AA--CT-T-C-G--T--GAT-GT--CTGTTAAC-G----TCAT-ATTCATT--TCTTCTC-AAAATAC-CG-TCC----------ACA---------AACA--T---TTCTC-A--T-ATC-GCTTA--C-ATCC--A-TGCATT------------------AAAAA--CG-TT-T-CTGA-ACT-AAGAGATG---TCGG--AG---------ATTG-T-----G-AT-ACTT--CGC---GG---CGAATT-TC-AGCT-CAC-G-TGAAATCTCT-TTCC--TCA-CAA-ATGATT------TTTT----AA-TG-CGTAGGA-A---------AGA-ATG--C-AAANAT-CTAGTA-TGA-CG-TCC-AT-CACCCTC--AT---TTTTAA-GTTTT---T--CGT-CTCT--TTTTG--TCG--G-TTCT--ACCACGCGCCT-C-TTCC--ATAG-GATTA---C-CA--CTCC-A-ATC-ATCCT-T-AAACCTTT-TG-G-GTCATGTGTA-TACC-AATAGGT--C-CGAGACACATGTTTGTGT---CGTG-TCTA--TCGTT-------TNCATCTCTCTTTTT-GT-TT-GAACGGGGGT--CAAACCT--CGCCTCCACANAGT-A-TTGAA-----TTA---C--A---ATTCGGTGC-GCC-GCATTA-TCA-TC--CGA-C-GTTGCCA-TTTTTTGAAAATTTCTAAC-GG-AA--GGTGTTTGTAC-GT--ATAACG-TCAT-AAAAATGTTATTT-AT-GA-CGTCAT-TTTATA-TAATTTTAT--ATTG-ACATGT--TT-GT-T-AG-ACCAT--AACGC-TTTTA-TTGATATA-A-TTATATTT-AAAAT-AT--AAC--GTTTG--T--ACA-A-TAAAATATA----GAGC-G-A-A-A-TTT--CAAC-CG--AAG-TGC---TCTTTT-CGAACG-TGCAAAAAA-A-TCG-GTGCGC-CG------ATTACTGATATTTTGCACC--TTTTAAA-TGCC--GTT--TTCA--TA--TTT--GT-TTG-TGACC-AAAAC--CTTAATA-TTTT---TT----G---TG-AAAATTACGATTATACCAT-C----CACT-A---ACA-ATAGG-C-AAAAT------------------TT--AGTA--AAG-TTT-GGTGAC---GT--AGTTT--A--TG-AAATATC-TAAA-AAG--T---T-CGC-G-TTTT-----TCT-G-GGAC-AACCCTCGTA
Reference ( family-1733 ) : CGAGGGTTGT--CCCA-GAA--AAACGCGAA-CATT-T---CANA-TAT-TTTT-TGTGA-AACTTCTAG--T--ATAT------C--TTTATTAT-TTGG--T--ACACAA-CAAAATGAT------CATN-T-TCTGAAT----ATC--G---CTG--TG----AAATTT--TTAATG-CATTTTGT----CTG---TAAAT--AACATT-------TT--TATCACA----CTTT--A---A--CCAG-TC-T-TA-CAT-AT--TAATAG-CT-GCCG--GCGC-AAC--GCTG-A-CG-A-C-GT--C-A----AAA--CG-T-AA--CT-T-C-G--T--GAT-GT--CTGTTAAC-G----TCAT-ATTCATT--TCTTCTC-AAAATAC-CG-TCC----------ACA---------AACA--T---TTCTC-A--T-ATC-GCTTA--C-ATCC--A-TGCATT------------------AAAAA--CG-TT-T-CTGA-ACT-AAGAGATG---TCGG--AG---------ATTG-T-----G-AT-ACTT--CGC---GG---CGAATT-TC-AGCT-CAC-G-TGAAATCTCT-TTCC--TCA-CAA-ATGATT------TTTT----AA-TG-CGTAGGA-G---------AGA-ATG--C-AAGCAT-CTAGTA-TGA-CG-TCC-AT-CACCCTC--AT---TTTTAA-GTTTT---T--CGT-CTCT--TTTTG--TCG--G-TTCT--ACCACGCACCT-C-TTCC--ATAG-GATTA---C-CA--CTCC-A-ATC-ATCCT-T-AAACCTTT-TG-G-GTCATGTGTA-TACC-AATAGGT--C-CGAGACACATGTTTGTGT---CGTG-TCTA--TCGTT-------TNCATCTCTCTTTTN-GT-TT-GAACAGGGAT--CAAACCT--CGCCTCCANACAGT-A-TTGAA-----TTA---C--A---ATTCGGTGC-GCC-GCATTA-TCA-TC--CGA-C-GTTGCCA-NTTTTTGAAAATTTCTAAC-GG-AA--GGTGTTTGTAC-GT--ATAACG-TCAT-AAAAATGTTATTT-AT-GA-CGTCAT-TTTATA-TAATTTTAT--ACTG-ACGTGT--TT-GT-T-AG-ACCAT--AACGC-TTTTA-TTGATATA-A-TTATATTT-AAAAT-AT--AAC--GTTTG--T--ANA-A-TAAAATATA----GAGC-G-A-A-A-TTT--CAAC-CG--AAG-TGC---TCTTTT-CGAACG-TGCAAAAAA-A-TCG-GTGCGC-CG------ATTACTGATATTTTGCACC--TTTTAAA-TGCC--GTT--TTCA--TA--TTT--GT-TTG-TGACC-AAAAC--CTTAATA-TTTT---TT----G---TG-AAAATTACGATTATACCAT-C----CACT-A---ACA-ATAGG-C-AAAAT------------------TT--NGTA--AAG-TTT-GGTGAC---GT--AGTTT--A--TG-AAATATC-TAAA-ANG--T---T-CGC-G-TTTT-----TCT-G-GGAC-AACCCTCGTA
gi|1 : GAGGGTTGTGTCCCATGAA--CAACGCGAA-CGTT-TGCTCATAATATATTTC-GGTAATAGCTTCTAA--TTCATACACTCGAC--TATATTGC-TTGGGCT--ACACAGGCAAAATGATT-----CAT--T-TCTGAAT-----TC--G---CTG--TG----AAATTT--TTAATGGCATTCTGT----CTG---TAA-T--AAATTT-------TT--TATCACA----CTTTCAA---A--CTAGGTC-T-TA-CAT-AA--TAATCGACT-ACCG---CGC-AAC--GTTG-A-CG-AGC-GTTTC-A----AAAGTCG-T-GAG-CTAT-C-GAAT--GAT-GT--CTGTTAAC-G----T-ATCATTCATT--CCTTCTCCAAAATATTCG-TCCTCACTATGTGACG---------AACACAT---TTATC-A--TGATCAGCTAAACCGAGCC--A--GCTTT------------------AATAA--CA-TT-T-CT-A-AGT-AAGAGATAAGTTTGGTAAG---------ATTGGT-----GGAT-ACTT--CGC---GGGCGCAAGTT-TC-AGTT-GAC-T-TGAAATCTCT-TTCC--TAAACAA-ATGATT------TTTTTGTTGA-TG-CG-AGG--G---------ACA-AGG--A-AAGCAT--------TGA-GG-TCCCATTCACCCAG--AT---TTTTAAAGTTTA---T--CGT-CT----TTTTG--TCACTG-TTCT--ACCAAGCACCT-C-CTCC--ATAGCGATTA---C-CA--CTCCCA-ACC-ATCCT-T-AA-CCTTTGTG-T-GCCA-GTGTA-TACCTAATAGGT--CGCGAGACACATGTTTGT-T---CATT-TCCAACTCGTA-------TTCATCTCTCTTTAA-GTATT-GAACAGCGAT--CAAACCT--TGCATCC-CAGAGT-AATTGGAAAAGGTTGAGCT--A---ATTTCGTGC-GCCAGCATTA-T-A-TCGCCGATC-GTTGCCA-TTTT---AAAATTGTTAAC-GG-GAATGGTGTGTGTAC-GTTTATAACG-CCAT-AAAAATGTTATTT-AT-GA-CGTCAT-TATATA-TAATTT-ATTGATTGGACATATGGTT-GT-TGAG-ACCATCCAACGC-TTT-A-TTGATTTA-A-TTATATTA-AGAAT-AGCGAACATGTTTG--T--GAA-A-TAAAATGAA----GAGC-G-A-ATA-TTT--CAGC-CG--AAG-TGC---TCTTTTTCGAACGGTGAAAGAAAGA-TCG--TGCGT-CG------GTTACTG-TATTTTGCACC--TTTTAAA-TGCC--GTT--TTCA--TAATTTT--GT-TTG-TGATC-AAAAC--CTTAATG-ATTT---TT----G---TGTAAAATTACGATTATATCAT-C----ATGT-A---ACA--TAGG-C-AAA-T------------------AT--AGTA--ACG-TTT-GGTGAC---GT--AGTTT--A--TA-AAATATC-TAAA-AAG--T---T-CGA-----TT-----TCT-G-GGAC-AACCCTCGTA
gi|10 : CGAGGGTTGT--CCCA-GAA--AAACGCGAA-CATT-T---CATA-TAT-TTTT-TGTGA-AACTTCTAG--T--ATAT------C--TTTATTAT-TTGA--T--ACACAA-CAAAATGAT------CATT-T-TCTGAAT----ATC--G---CTG--TA----AAA-TT--TTAATG-CATTTTGT----CTG---TAAAT--AACATT-------CT--TATCACA----TTTT--G---A--CCAG-TC-T-TA-CA------TAATAG-CT-GCCG--GCGC-AA
gi|11 : taAAT--AACATT-------TT---ATCACA----CTTT--A---AACCCAG-TC-T-TATCAT-AT--TGA--G-CC-TCCG--GCGC-AAC--GCAG-A-GG-A-C-GA--C-ATAATAAA--GGCT-AG--CT-T-CGG--T--GAT-GT--
gi|12 : agttttagatatccctgttgagaaccagcagtgatcatgtacacatgacatacgcgcttggtactgtactgcatcgTGT----CTG---TTAAT--AACATT-------TT--TATCACA----CTTC--A---A--CTAG-TC-T-TA-CAT-A-----ATAA-CT-ACCG--GCGC-AAC--GTTG-A-CG-A-C-GT--C-A----AAA--CG-G-AG--CT-T-C-G--T--GAT-GT--CTGTTAAC-G----TCAT-ATTCATT--CCTTCTC-AAAATAT-CG-TCCACTATGTG--ACA---------AACA--T---TTATC-A--T-ATC-GCT
gi|13 : --G---CTG--TG----AAAGTT--TTA-TG-CATTTAGT----CTG---TAAAT--AACATT-------TT--AAACACA----CTTT--A---A--CCAG-TC-T-TA-CAT-AT-----TAG-AT-GCCG--GCGC-AAC--GCTG-A-CG-A-C-GT--C-A----AAA--CG-
gi|14 : --ATAG-GATCG---CGCA---TCG-ATATC-ATCCT-T-AAACCTTT-TG-T-GTCATGTG-A-TACC-AAT--GT--C-CGAGACACATGTTTGTGT---C
gi|15 : -GT-TT-GAACAGGGAT--CAAACCT--TG-CTCCACAGAGT-A-TTGAA-----TTA---C--A---AT
gi|2 : CGAGGTATAT--CCCA-GAAGAAAATGCGAAACAGTGT---CGCA-TAT-TATTATGTTT-AACTTTTAAGCC--ATAT------C--ATT-TTATGTTGG--T--ACACAA--AAAATGATTTTTATCATTGT-TCT-AAT----ATCAAG---CTG--TG----AAATTT--TTAAGG-AGTTTTGTA---CTG---TAAAT--AACGTT-------TTATTATCACA----CTTC--A---AT-CCAG-TCGT-CA-CATTAT--AGAAAG-CTAGCCGCTGCAC-AAAAAGCTGCATCG-A---GT--CGA----AAA--CG-T-AAAATT-T-C-G--T--GAT-GG--CCGT-----G----CCA---------------CT-----ATGC-TG--------------ACA---------AACA--T---TTCTC-ACAT-ATC-GCTGA--C-ACCC--A-TGCATG------------------AAAAAAACA-CT-TACTGA-ACTCAAGAGATG-----GG--AGCGAGTAACGATTG-TCATATG-AT-ACTTGCCGCTGTGG---CAAATT-TCGAGCT-CATTG-TGAAATCTCT-TTCC--TCA-CAAGATGATT------TTTT----AAGCG-CGTAGGATA---------AGA-TTG--C-AAG--T-CTAGTA-T-A-CGGTTC-AT-CATCCGC--AT---TTTTAA-A----------CGT----T--TTTTG--TCG--GATTTT--ACCGCGCACCT-C-TTCC--A-AG-GATTATGTC-CAGTTTTC-A-ATCCATCCTAT-AAATCTTT-TGTG-AGCATGGTTA-TGCC-AGTAGGTGTC-CGAGACACATGTTTGTGT---CGTGATCT---TCGTT-------TCCATCTCTCTTTTA-GT-TTAGAACAGGGGT--CAAACCTTACGGCTCCACACAGTGA-TTGAA------TA---C--AGAGGGTCGGT-C-GCC-GCCTTA-TCA-TC--CGA-C-GTTTCCATGTTTTTGAAAATTTCTAAC-GGAAA--GGT-TTTGTACGGT--ATAACG-TCAT--AAAATG-TA-TT-ATAGA-CGTCATATTTATA-TAAGTGTAT--ACTG-ATGTGT--TG-GTGT-AT-GCCAT---ACAC-TTTTA-TCTATATAGA-TAGTATTT-AAAACGAT----C--GTTGGGATTAACA-ATTAAAATGT-----GATCAG-ACA-A-CTTTGCAAA-CAATAAA-CGCTTGTTCTTT-CAGACG-TGCAAAGAA-ATTCGAGTTGGC-CGACCGTAATTACTGATATTGTGCACT--TTTTAAAGTACCCGGGTAATTCACCTA--TTT--GTGTTG-TGACC-AAAGTCACTTAAGA-TTTTGTCTTGTTAG---TG-AAAATTGCG-TTAT--CAT-C----CATTAA---ACA-ATAGG-C-AAAAT------------------ATGAAGTA--AAGATTTGGGTGA----GTTGAGTGT--GATTG-ACATATC-TAGA-AAT--T---TGCGT-G-TTTT-----TCTGG-GGAC-ACCC
gi|3 : CGAGAGTTGT--CCCA-GAA--AAACACGAA-CATT-T---TATG-TAT-TTTT-TGTGA-AACTTCTAG--T---TAT------TCTTTTATTAT-TTGG--TGTACACAA-CAAAATG-T------CATT-A-TCTGAAT----ATC--G---CTGGCTG----AAATTT--TTAATG-CATTTTGT----CTG---TAAAT--A-CATT-------TT---ATCACA----CTTT--A---AACCCAG-TC-T-TA-CAT-A-----A-AG-CT-GCCG--GCGC-AAC--GCTG-A-CG-A-C-GT--C-A----AAA--CG-T-AA--C---------------------------------------ATTCATT--TTTTCTC-AAA-TAC-CGCTCC----------AAATTGTGGAAAAACA--T---TTCTTTA--T-ATC-GCTT---C-ATCCCTACTGCATT------------------AAAAA--CGGTTGT-CTGATACT-AAGAGATG---TCGG--AA---------ATTG-T-----G-ATTACTT--CGC---GG---CGAATTCTC-AGCTTCAC-GGTAAAATCCCT-TTCC--TCA-CAA-ATTA---------TTT----AA-TATCGCAGGA-A---------AGA-ATGGCC-AAACAT-CTAGTATTGA-CG-TCC-AT-CACCCT---AT---TTTTAA-GTTTT---T--CGT-CTCT--TTTTG--TCA--G-TTCT--ACCACGCGCCT-C-TTTT--ATAG-G-TTA---C-CA--CTCC-A-TTCAATCCT-T-AAACCTTT-TG-G-GTCATGTGTA-TACC-AAATTGT--C-CGAGACACATGTTT-TGTGGACGTG-TCTA--TCGTT-------TACATCTTTCTTTTT-GT-TT-AATTGGGGGC--CAAACCT--CGCCTCCAAACAGT-A-TTGAA------TA---CCAA---ATTCGGTGC-GCC-GCATCA--CATTC--CGA-CTGTTGCCA-TTTTTTGAAAATTTCTAACGGG-AA--GGTGTTTGTAC-GT--AAAACGTTCATAAAAAATCTTATTTAAT-GA-CGTCA--TTTATATTAATTTTAT--ATTG-ACATGT--TTGGT-T-AG-ACCAT--AACAC-TTTCATTTGATATA-A-TTATATTTAAAAAT-AT--AAT--GTTTGC-T--ACATA-TAAAAAATAATCGGAGC-C-A-A-ATTTT--CAAC-CG--AAGTTGC---TCTTTT-CGAAC--TGC-AAAAA-A-TCG-GTGCGC-CG------ATTACTGATATTTTGCGGCTTTTTTAAA-TGCC--GTT--TTCA--TA--TTTTGGT-TTGTTAACC-AAAAC--CTTGATA-TTTT---TT----GC--TG-AAAATTACGATTATACCATCC----CACT-A---ACA-ATAGG-CAAAAAT------------------TT--TGTA--AG---TT-GGTGAC---GT--AGTTT--A--TGAAAATATC-TAAATAAGTTT---T-CGC-GTTTTT-----TCT-GTGGACAAACCCTCGT
gi|4 : aCGAGGGTTGT--CCCA-GAA--AAACACGAA-CATT-T---TATA-TAT-TTTT-TGTGA-AACTTCTAG--T--ATAT------C--TTTAGTAT-TTGG--T--ACATAA-CAAAATGAT------CATA-T-TCTGAAT----ATC--G---CTG--TG----AAATTT--T-AATG-CATTTTGT----CTG---TAAAT--AACATT-------TT--TATCACA----CTTT--A---A--CCAG-TC-T-TA-CAT-ATGATAATAG-CT-GCCG--GGGC-AAC--GCTG-A-CG-A-C-GT--C-A----AAA--CG-T-AA--CT-T-C-G--T--GAT-GT--CTGTTAAC-G----TCAT-ATTCATT--TTTTCTC-AAAATAC-CG-TCC----------A--------------A--T---TTCTT-A--T-ATC-GCTT---C-ATCC--A-TGCATT------------------AAAAA--CG-TT-T-CTGA-ACT-AAGAGATG---TCGG--AA---------ATTA-T-----G-AT-ACTT--CGC---GG---CGAATT-TC-AG-T-CAT-G-TAAAATCTCT-TTCC--TCC-CAA-ATGATT------TTT-----AA-TG-C--AGGA-A---------AGA-ATG--C-AAAAAT-CTAGTA-TGA-CG-TCC-AC-CACCTTCTTAT---TTTTAA-GTTTT---T--CGT-CTCT--TTTTG--TCA--G-T-CT--ACCACGCGCCT-C-TTTC--ATAG-GATTA---C-CA--CTCC-A-ATC-ATCCT-T-AAACCTTT-TG-G-GTCATCTGTA-TACC-AAT--GT--C-CGAGACACATGTTCGTGA---CGT--TCTA--TCGTT-------TACATCTCTCTTTTT-GT-TT-GAATTGGGGC--CAAACCT--CGT-TCCAAACAGT-A-TTGAA-----TTA---C--A---ATTCGGTGC-GCC-GCATCA-TCA-TC--CGA-C-GTTGCC--TTTTTTAAAAATTTCTAAC-GG-AA--AGTGTTTGTAC-GT--ATAAAG-TCAT-AAAAATGTTATTT-AT-GA-CGTCAT-TTTATA-TAATTTTAT--ATTG-ACATGT--TT-GT-T-AG-ACCAT--AACAC-TTTTA-TTGATATA-A-TTATATTT-AAAAT-AT--AAT--GTTTG--T--ACA-A-TAAAATATA----GAGC-A-A-A-A-TTT--CAAC-CG--AAG-TGC---TCTTTT-CGAACG-TGCAAAAAA-A-TCG-GTGCGC-CG------ATTACTGATATTTTGCACC--TTTTAAA-TGCC--GTT--TTCA--TA--TTT--GT-TTG-TAACC-AAAAC--CTTGATA-TTTT---TT----G---TG-AAAATTACGATTATACCAT-C----CACT-A---ACA-ATAGG-C-AAAAT------------------TT--AGTA--AAG-TTT-GGTGAC---GT--AGTTT--A--TG-AAATATC-TAAA-AAG--T---T-CGC-G-TTTT-----TCT-G-GGAC-AACCCTCGTA
gi|5 : AAACTTCTGTTCCCTTCA-CAA--TGATTGTGTTTTTTT----AA-TG-CGTAGCA-GCTATATAATAGATATG--CAAAAAATGCTAGTA-TGACCG-TTC--T-TATCTTC--ACAGGTTTTAA-GGTTA---TGCCGT-TTCT--
gi|5 : aT---TTTTAA-GTTTTGGTT--CGTTCTCTAATTTTGATTCG--G-TTCCTCACCACGCACCTACGTTCCGCATAA-GATTA---T-CT--CACC-ACACC-ATCCT-TGAAACTTTT-TA-GTGTCATGTGTAATACC-AATAG-T--C-CGAGACACATGTT-GTGT---CGT--TCTA--TGATTGCTTTTGTTCATCTTTCTTTTTAGT-TT-GAATAGAGATTTCAAAC-T--CGC-TCCACAGCGT-A-T-GCA-----TTA---C--A---AT-CGTTGCTGCC-GCATTAGTCA-TC--TGAAC-GTTGCCA--TTTTTGAAA-TTTCTAAC-AG-A---GGTGTT-GTAC-GT--ATA-CG-TCAT-AAAA-TGTTATTT-TA-GAGTATC-T-TTTATA-TAATTTTAT--ACTG-ACAAG---TT-GT-T-AGAACCCT--AACGCTTTTTA-TTGCTACG-ATTTATATTT-AAAAT-AT--AAT--GTTTG--T--AAA-A-T-AAATATA----GAGC-GCA-A-A-TTT--TAACGCG--AAG-TGC----CTTTT--GAACG-TGCAAAAAA-A-TCG-GTGCGTGCG------ATctgcctttttaagttttggttcgttctctaattttgattcggttcctcaccacgcacctacgttccgcataagattatctcaccacaccatccttgaaactttttagtgtcatgtgtaataccaatagtccgagacacatgttgtgtcgttctatgattgcttttgttcatctttctttttagtttgaatagagatttcaaactcgctccacagcgtatgcattacaatcgttgctgccgcattagtcatctgaacgttgccatttttgaaatttctaacagaggtgttgtacgtatacgtcataaaatgttattttagagtatcttttatataattttatactgacaagttgttagaaccctaacgctttttattgctacgatttatatttaaaatataatgtttgtaaaataaatatagagcgcaaattttaacgcgaagtgccttttgaacgtgcaaaaaaatcggtgcgtgcgatgggttctatctaatgaatagaattgctcctttgccaggcggaggaagtggcactattattaaaaaaaattgcctgttcattttttctcccccaatattcttcgtttggtcagacccgattaaccattacatgatttatttttttatttaaaaattacgattattatcgacatactatagacgtataggtcgaaatacaaggcgaatatcaactttggtacaaagtgtgtgactgcgtagttttaatgtaaaaatcgtaaaaagtggatcgccgttttttttttctgggacacccttatacagctaaaatat
gi|5 : aaaacttctgttcccttcacaatgattgtgtttttttaatgcgtagcagctatataatagatatgcaaaaaatgctagtatgaccgttcttatcttcacaggttttaaggttatgccgtttctctgccTA-TTTT---TT----TATTTA-AAAATTACGATTAT--TAT-CGACATACT-ATAGACGTATAGGTC-GAAATACAAGGCGAATATCAACTTT--GGTACAAAG-TGT-G-TGACTGCGT--AGTTTTAA--TGTAAAAATCGTAAA-AAG--TGGAT-CGCCG-TTTTTTTTTTCT-G-GGAC--ACCCTTATAgggttctatctaatgaatagaattgctcctttgccaggcggaggaagtggcactattattaaaaaaaattgcctgttcattttttctcccccaatattcttcgtttggtcagacccgattaaccattacatgatttatttttttatttaaaaattacgattattatcgacatactatagacgtataggtcgaaatacaaggcgaatatcaactttggtacaaagtgtgtgactgcgtagttttaatgtaaaaatcgtaaaaagtggatcgccgttttttttttctgggacacccttatacagctaaaatat
gi|6 : aaaacttctgttcccttcacaatgattgtgtttttttaatgcgtagcagctatataatagatatgcaaaaaatgctagtatgaccgttcttatcttcacaggttttaaggttatgccgtttctctgcctttttaagttttggttcgttctctaattttgattcggttcctcaccacgcacctacgttccgcataagattatctcaccacaccatccttgaaactttttagtgtcatgtgtaataccaatagtccgagacacatgttgtgtcgttctatgattgcttttgttcatctttctttttagtttgaatagagatttcaaactcgctccacagcgtatgcattacaatcgttgctgccgcattagtcatctgaacgttgccatttttgaaatttctaacagaggtgttgtacgtatacgtcataaaatgttattttagagtatcttttatataattttatactgacaagttgttagaaccctaacgctttttattgctacgatttatatttaaaatataatgtttgtaaaataaatatagagcgcaaattttaacgcgaagtgccttttgaacgtgcaaaaaaatcggtgcgtgcgatgggttctatctaatgaatagaattgctcctttgccaggcggaggaagtggcactattattaaaaaaaattgcctgttcattttttctcccccaatattcttcgtttggtcagacccgattaaccattacatgattCGAGGGTTGT--CCCA-GAA--AAACGCGAA-CATT-T---CATA-TAT-TTTT-TGTGA-AACTTCTAG--T--ATAT------C--ATTATTAT-TTGA--A--ACACAA-CAAAATGAT------CATT-T-TCTGAATATCGATC--G---CTG--TG----AAA-TT--TTACTG-CATTTTGT----CTG---TAAAT-----ACT-------TT--TATCACA----CTTT--A---A--CCAG-TC-T-TA-C-T-------ATAG-CT-GCCG--GCGC-AAC--GCTG-A-CG---C-AT--C------AAA--CG-TAAA--CT-T-C-G--T--GA---T--TTGTTAACGG----TCAT-A-TCATCTGTTTTCTC-AAAATA--CG-TCC----------ATATGAG-----AAAA--TACATTC-C-A--T-ATC-GCTTAC-C-ATNN--N-NNNNNNNNNNNNNNNNNNNNNNAAAAAAA--CG-TT-T-CTGA-ACT-AAGAGATG---Tcagctaaaatat
gi|7 : ta-TTTTA-TTGATATA-A-TTATATTT-AAAAT-AT--TAT--GTTTG--T--ACA-A-TAAAATATA----GACC-A-A-A-A-TTT--CAAC-CG--AAG-TGC---TCTTTT-CGAACG-TGCAAAAAA-A-TCG-GTGTGC-CG------ATTACTGATATTTTGCACC--TTTTAAA-TGCC--GTT--TTCA--TA--TTT--GT-TTG-TAACC-AAAAC--CTTAATA-TTTT---TT----G---TG-AAAATTACTATTATACCAT-C----CACT-A---ACA-ATAGG-C-AAATT------------------TT--TGTA--AAG-TTT-GGTGAC---GT--AGTTT--A--TG-AAATATC-TAAA-AAG--T---T-CGC-G-TTTT-----TCA-G-GGAC-AACCCTCGTAg
gi|8 : -TTTTA-TTGATATA-G-TTATATTT-AAAAT-AC--AAC--GTTTG--T--GAA-A-TAAAATATA----GAGC-G-A-A-A-TTT--CAAC-CG--AAG-TGC---TCTTTT-CGAACG-TGCAAAAAA-A-TCG-GTGGGC-CG------ATTACTGATATTTTGCACC--TTTTAAA-TGCC--GTT--TTCA--TA--TTT--GT-TTG-TGACCAAAAAC--CTTAAGATTTTT---TT----G---TG-AAAATTACGATTATATCAT-C----CATT-A---ACA-ATCGT-C-AAAAT------------------TT--AGTA--AAG-TTT-GATGAC---GT--AGTT
gi|9 : ATG-TATCTGGAC----ATA--GTCCCTG--TGCCAAAAGTTTGTTCAATG---TCTTGTAGTCCTGAGTCAAATTTAACATTATCATTATT--TATCACAGTTTCTTT--ATATG--CCAT-TC-TCTT-CAC-AT---AATAG-CT-GC-G--GCGCTAAC--TCTG-A-CGGA-CTGC--C-A----AAAA-CG-T-AA--TT-TTC-A--TTCGATTGCTACTGTTAAC-GAAGTCCAT-ATTTATA--TCTTCTCTAAAAT
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|16 ): ATTGAAATAGTACTAATGAAAACTAAAGTGAAGTA
Alignments
lowQualScore : 111 11111 222222222 11111 222222 1111 1111 1111 1111111 11 3333333 111111 11 11 111111111 1 11 8888888888888888888888 111111 3333 11111 555555555555555555 11 11111 4444444444444 2222222 1 1 11 111 111 1 1 1 111 11 222222 11111 44444444444 1111 1111 1111 111 1111111 11 11 11 111 111 1 1 111 11 111 22 111 2222222 1 222222222222222222 11 1 11111 11 11 111 111 1111111 11 1111 111 111111 111 22222222 1111 111 444444444444444444 111 11111 1 111111 111 11111
lowQualScore : 99 6 99 6 6 111 6 6 6 6 11111 111111111 6 33333 6 5 222222 5 2222 66 888 66 0000 6 66 0 5 3333 777 55 3333333 888 8888 55 777 55 4 4 4 4 0000000 3 4 4 55 4 66 4 4 555 4 66 000000 00 4 5 11 5 5 7777777 777777 1 5 333333333 1 888 0 1 00 6 7777777777777777777777 111111 6 99 6 6 0000 8 44444 999999999999999999 11 8 8 8 8 8 55555 2222222222222 6666666 0 0 33 777 777 0 0 6 0 666 8 11 8 88 0 333333 77777 8 8 4 22222222222 8 0 4444 8 8 8 8 8 0000 7777 111 6 3 9999999 9999999 11 11 8 0 11 8 8 99 6 111 6 000 6 3 3 6 6 6 111 6 6 44 99 6 1 111 33 111 6666666 1 88 6 6 4 99 99 9 1 6 6 444444444444444444 0 8 8 88 8 11 6 8 0 8 999 8 33333 0 8 11 0 8 88 0 0 0 8888 8 999 8 0 11 8 111 8 8 8 8 111 5 0 5 5 5 5 5 1111111 33 77 0 5 5 2222 999 5 5 5 77 5 77 5 000 5 5 5 5 5 5 666666 99 6 99 99 99 99 99 6 6 6 99 5 000 11111111 5 66 5 2222 5 000 5 5 5 1 222222222222222222 888 77 5 5 000 77 11111 3 6 6 111111 6 111 66666 6 6 6
lowQualScore : .. . .. . . ... . . . . ..... ......... . ..... . . ...... . .... .. ... .. .... . .. . . .... ... .. ....... ... .... .. ... .. . . . . ....... . . . .. . .. . . ... . .. ...... .. . . .. . . ....... ...... . . ......... . ... . . .. . ...................... ...... . .. . . .... . ..... .................. .. . . . . . ..... ............. ....... . . .. ... ... . . . . ... . .. . .. . ...... ..... . . . ........... . . .... . . . . . .... .... ... . . ....... ....... .. .. . . .. . . .. . ... . ... . . . . . . ... . . .. .. . . ... .. ... ....... . .. . . . .. .. . . . . .................. . . . .. . .. . . . . ... . ..... . . .. . . .. . . . .... . ... . . .. . ... . . . . ... . . . . . . . ....... .. .. . . . .... ... . . . .. . .. . ... . . . . . . ...... .. . .. .. .. .. .. . . . .. . ... ........ . .. . .... . ... . . . . .................. ... .. . . ... .. ..... . . . ...... . ... ..... . . .
lowQualScore : 22 7 22 7 7 777 7 7 7 7 88888 000000000 7 77777 7 0 111111 7 1111 99 888 99 6666 2 99 1 0 9999 888 55 0000000 999 5555 55 000 00 0 0 0 0 2222222 4 0 0 55 0 11 4 4 333 4 11 333333 66 4 0 99 0 0 9999999 111111 4 7 111111111 4 111 4 4 33 7 8888888888888888888888 888888 7 22 7 7 6666 0 88888 000000000000000000 00 0 0 0 0 0 00000 8888888888888 0000000 0 0 88 555 555 0 0 5 0 222 0 00 0 88 8 000000 88888 0 0 0 00000000000 0 8 0000 8 0 0 0 0 8888 0000 777 7 2 5555555 3333333 00 00 0 8 00 0 0 22 7 777 7 222 7 3 3 7 7 7 777 7 7 22 22 7 7 777 00 888 0000000 0 11 7 7 8 22 22 2 0 7 7 777777777777777777 8 0 0 88 0 00 0 0 8 0 666 0 88888 8 0 00 8 0 88 8 8 8 4444 0 666 0 8 00 0 888 0 0 0 0 888 7 1 7 7 7 7 7 0000000 66 99 7 7 7 1111 666 7 7 7 99 7 99 7 000 7 7 7 7 7 7 444444 22 7 22 22 22 22 22 7 7 7 22 7 000 44444444 7 77 7 1111 7 000 7 7 7 7 111111111111111111 444 99 7 7 000 99 88888 3 7 7 888888 7 777 77777 7 7 7
consensus : CGAGGGTTGT--CCCA-GAA--AAACGCGAA-CATT-T---CATA-TAT-TTTT-TGTGA-AACTTCTAG--T--ATAT------C--TTTATTAT-TTGG--T--ACACAA-CAAAATGAT------CATT-TTCTGAAT----ATC--G---CTG--TG----AAATTT--TTAATG-CATTTTGT----CTG---TAAAT--AACATT-------TT--TATCACA----CTTT--A---A--CCAG-TC-T-TA-CAT-AT--TAATAG-CT-GCCG--GCGC-AAC--GCTG-A-CG-A-C-GT--C-A----AAA--CG-T-AA--CT-T-C-G--T--GAT-GT--CTGTTAAC-G----TCAT-ATTCATT--TCTTCTC-AAAATAC-CG-TCC----------ACA---------AACA--T---TTCTC-A--T-ATC-GCTTA--C-ATCC--A-TGCATT------------------AAAAA--CG-TT-T-CTGA-ACT-AAGAGATG---TCGG--AG---------ATTG-T-----G-AT-ACTT--CGC---GG---CGAATT-TC-AGCT-CAC-G-TGAAATCTCT-TTCC--TCA-CAA-ATGATT------TTTT----AA-TG-CGTAGGA-A---------AGA-ATG--C-AAANAT-CTAGTA-TGA-CG-TCC-AT-CACCCTC--AT---TTTTAA-GTTTT---T--CGT-CTCT--TTTTG--TCG--G-TTCT--ACCACGCGCCT-C-TTCC--ATAG-GATTA---C-CA--CTCC-A-ATC-ATCCT-T-AAACCTTT-TG-G-GTCATGTGTA-TACC-AATAGGT--C-CGAGACACATGTTTGTGT---CGTG-TCTA--TCGTT-------TNCATCTCTCTTTTT-GT-TT-GAACGGGGGT--CAAACCT--CGC-TCCACANAGT-A-TTGAA-----TTA---C--A---ATTCGGTGC-GCC-GCATTA-TCA-TC--CGA-C-GTTGCCAT-TTTTTGAAAATTTCTAAC-GG-AA--GGTGTTTGTAC-GT--ATAACG-TCAT-AAAAATGTTATTT-AT-GA-CGTCAT-TTTATA-TAATTTTAT--ATTG-ACATGT--TT-GT-T-AG-ACCAT--AACGC-TTTTA-TTGATATA-A-TTATATTT-AAAAT-AT--AAC--GTTTG--T--ACA-A-TAAAATATA----GAGC-G-A-A-A-TTT--CAAC-CG--AAG-TGC---TCTTTT-CGAACG-TGCAAAAAA-A-TCG-GTGCGC-CG------ATTACTGATATTTTGCACC--TTTTAAA-TGCC--GTT--TTCA--TA--TTT--GT-TTG-TGACC-AAAAC--CTTAATA-TTTT---TT----G---TG-AAAATTACGATTATACCAT-C----CACT-A---ACA-ATAGG-C-AAAAT------------------TT--AGTA--AAG-TTT-GGTGAC---GT--AGTTT--A--TG-AAATATC-TAAA-AAG--T---T-CGC-G-TTTT-----TCT-G-GGAC-AACCCTCGTA
Reference ( family-1733 ) : CGAGGGTTGT--CCCA-GAA--AAACGCGAA-CATT-T---CATA-TAT-TTTT-TGTGA-AACTTCTAG--T--ATAT------C--TTTATTAT-TTGG--T--ACACAA-CAAAATGAT------CATT-TTCTGAAT----ATC--G---CTG--TG----AAATTT--TTAATG-CATTTTGT----CTG---TAAAT--AACATT-------TT--TATCACA----CTTT--A---A--CCAG-TC-T-TA-CAT-AT--TAATAG-CT-GCCG--GCGC-AAC--GCTG-A-CG-A-C-GT--C-A----AAA--CG-T-AA--CT-T-C-G--T--GAT-GT--CTGTTAAC-G----TCAT-ATTCATT--TCTTCTC-AAAATAC-CG-TCC----------ACA---------AACA--T---TTCTC-A--T-ATC-GCTTA--C-ATCC--A-TGCATT------------------AAAAA--CG-TT-T-CTGA-ACT-AAGAGATG---TCGG--AG---------ATTG-T-----G-AT-ACTT--CGC---GG---CGAATT-TC-AGCT-CAC-G-TGAAATCTCT-TTCC--TCA-CAA-ATGATT------TTTT----AA-TG-CGTAGGA-A---------AGA-ATG--C-AAANAT-CTAGTA-TGA-CG-TCC-AT-CACCCTC--AT---TTTTAA-GTTTT---T--CGT-CTCT--TTTTG--TCG--G-TTCT--ACCACGCGCCT-C-TTCC--ATAG-GATTA---C-CA--CTCC-A-ATC-ATCCT-T-AAACCTTT-TG-G-GTCATGTGTA-TACC-AATAGGT--C-CGAGACACATGTTTGTGT---CGTG-TCTA--TCGTT-------TNCATCTCTCTTTTT-GT-TT-GAACGGGGGT--CAAACCT--CGCCTCCACANAGT-A-TTGAA-----TTA---C--A---ATTCGGTGC-GCC-GCATTA-TCA-TC--CGA-C-GTTGCCAT-TTTTTGAAAATTTCTAAC-GG-AA--GGTGTTTGTAC-GT--ATAACG-TCAT-AAAAATGTTATTT-AT-GA-CGTCAT-TTTATA-TAATTTTAT--ATTG-ACATGT--TT-GT-T-AG-ACCAT--AACGC-TTTTA-TTGATATA-A-TTATATTT-AAAAT-AT--AAC--GTTTG--T--ACA-A-TAAAATATA----GAGC-G-A-A-A-TTT--CAAC-CG--AAG-TGC---TCTTTT-CGAACG-TGCAAAAAA-A-TCG-GTGCGC-CG------ATTACTGATATTTTGCACC--TTTTAAA-TGCC--GTT--TTCA--TA--TTT--GT-TTG-TGACC-AAAAC--CTTAATA-TTTT---TT----G---TG-AAAATTACGATTATACCAT-C----CACT-A---ACA-ATAGG-C-AAAAT------------------TT--AGTA--AAG-TTT-GGTGAC---GT--AGTTT--A--TG-AAATATC-TAAA-AAG--T---T-CGC-G-TTTT-----TCT-G-GGAC-AACCCTCGTA
gi|1 : GAGGGTTGTGTCCCATGAA--CAACGCGAA-CGTT-TGCTCATAATATATTTC-GGTAATAGCTTCTAA--TTCATACACTCGAC--TATATTGC-TTGGGCT--ACACAGGCAAAATGATT-----CATT-T-CTGAAT-----TC--G---CTG--TG----AAATTT--TTAATGGCATTCTGT----CTG---TAA-T--AAATTT-------TT--TATCACA----CTTTCAA---A--CTAGGTC-T-TA-CAT-AA--TAATCGACT-ACCG---CGC-AAC--GTTG-A-CG-AGC-GTTTC-A----AAAGTCG-T-GAG-CTAT-C-GAAT--GAT-GT--CTGTTAAC-G----T-ATCATTCATT--CCTTCTCCAAAATATTCG-TCCTCACTATGTGACG---------AACACAT---TTATC-A--TGATCAGCTAAACCGAGCC--A--GCTTT------------------AATAA--CA-TT-T-CT-A-AGT-AAGAGATAAGTTTGGTAAG---------ATTGGT-----GGAT-ACTT--CGC---GGGCGCAAGTT-TC-AGTT-GAC-T-TGAAATCTCT-TTCC--TAAACAA-ATGATT------TTTTTGTTGA-TG-CGAGGGACA---------AGG-A------AAGCAT--------TGA-GG-TCCCATTCACCCAG--AT---TTTTAAAGTTTA---T--CGT-CT----TTTTG--TCACTG-TTCT--ACCAAGCACCT-C-CTCC--ATAGCGATTA---C-CA--CTCCCA-ACC-ATCCT-T-AA-CCTTTGTG-T-GCCA-GTGTA-TACCTAATAGGT--CGCGAGACACATGTTTGT-T---CATT-TCCAACTCGTA-------TTCATCTCTCTTTAA-GTATT-GAACAGCGAT--CAAACCT--TGCATCC-CAGAGT-AATTGGAAAAGGTTGAGCT--A---ATTTCGTGC-GCCAGCATTA-T-A-TCGCCGATC-GTTGCCAT-TTT---AAAATTGTTAAC-GG-GAATGGTGTGTGTAC-GTTTATAACG-CCAT-AAAAATGTTATTT-AT-GA-CGTCAT-TATATA-TAATTT-ATTGATTGGACATATGGTT-GT-TGAG-ACCATCCAACGC-TTT-A-TTGATTTA-A-TTATATTA-AGAAT-AGCGAACATGTTTG--T--GAA-A-TAAAATGAA----GAGC-G-A-ATA-TTT--CAGC-CG--AAG-TGC---TCTTTTTCGAACGGTGAAAGAAAGA-TCG--TGCGT-CG------GTTACTG-TATTTTGCACC--TTTTAAA-TGCC--GTT--TTCA--TAATTTT--GT-TTG-TGATC-AAAAC--CTTAATG-ATTT---TT----G---TGTAAAATTACGATTATATCAT-C----ATGT-A---ACA--TAGG-C-AAA-T------------------AT--AGTA--ACG-TTT-GGTGAC---GT--AGTTT--A--TA-AAATATC-TAAA-AAG--T---T-CGA-----TT-----TCT-G-GGAC-AACCCTCGTA
gi|10 : CGAGGGTTGT--CCCA-GAA--AAACGCGAA-CATT-T---CATA-TAT-TTTT-TGTGA-AACTTCTAG--T--ATAT------C--TTTATTAT-TTGA--T--ACACAA-CAAAATGAT------CATT-TTCTGAAT----ATC--G---CTG--TA----AAA-TT--TTAATG-CATTTTGT----CTG---TAAAT--AACATT-------CT--TATCACA----TTTT--G---A--CCAG-TC-T-TA-CA------TAATAG-CT-GCCG--GCGC-AA
gi|11 : taAAT--AACATT-------TT---ATCACA----CTTT--A---AACCCAG-TC-T-TATCAT-AT--TGA--G-CC-TCCG--GCGC-AAC--GCAG-A-GG-A-C-GA--C-ATAATAAA--GGCT-AG--CT-T-CGG--T--GAT-GT--
gi|12 : agttttagatatccctgttgagaaccagcagtgatcatgtacacatgacatacgcgcttggtactgtactgcatcgTGT----CTG---TTAAT--AACATT-------TT--TATCACA----CTTC--A---A--CTAG-TC-T-TA-CAT-A-----ATAA-CT-ACCG--GCGC-AAC--GTTG-A-CG-A-C-GT--C-A----AAA--CG-G-AG--CT-T-C-G--T--GAT-GT--CTGTTAAC-G----TCAT-ATTCATT--CCTTCTC-AAAATAT-CG-TCCACTATGTG--ACA---------AACA--T---TTATC-A--T-ATC-GCT
gi|13 : --G---CTG--TG----AAAGTT--TTA-TG-CATTTAGT----CTG---TAAAT--AACATT-------TT--AAACACA----CTTT--A---A--CCAG-TC-T-TA-CAT-AT-----TAG-AT-GCCG--GCGC-AAC--GCTG-A-CG-A-C-GT--C-A----AAA--CG-
gi|14 : --ATAG-GATCG---CGCA---TCG-ATATC-ATCCT-T-AAACCTTT-TG-T-GTCATGTG-A-TACC-AAT--GT--C-CGAGACACATGTTTGTGT---C
gi|15 : -GT-TT-GAACAGGGAT--CAAACCT--TGC-TCCACAGAGT-A-TTGAA-----TTA---C--A---AT
gi|2 : CGAGGTATAT--CCCA-GAAGAAAATGCGAAACAGTGT---CGCA-TAT-TATTATGTTT-AACTTTTAAGCC--ATAT------C--ATT-TTATGTTGG--T--ACACAA--AAAATGATTTTTATCATTGTTCT-AAT----ATCAAG---CTG--TG----AAATTT--TTAAGG-AGTTTTGTA---CTG---TAAAT--AACGTT-------TTATTATCACA----CTTC--A---AT-CCAG-TCGT-CA-CATTAT--AGAAAG-CTAGCCGCTGCAC-AAAAAGCTGCATCG-A---GT--CGA----AAA--CG-T-AAAATT-T-C-G--T--GAT-GG--CCGT-----G----CCA---------------CT-----ATGC-TG--------------ACA---------AACA--T---TTCTC-ACAT-ATC-GCTGA--C-ACCC--A-TGCATG------------------AAAAAAACA-CT-TACTGA-ACTCAAGAGATG-----GG--AGCGAGTAACGATTG-TCATATG-AT-ACTTGCCGCTGTGG---CAAATT-TCGAGCT-CATTG-TGAAATCTCT-TTCC--TCA-CAAGATGATT------TTTT----AAGCG-CGTAGGATA---------AGA-TTG--C-AAG--T-CTAGTA-T-A-CGGTTC-AT-CATCCGC--AT---TTTTAA-A----------CGT----T--TTTTG--TCG--GATTTT--ACCGCGCACCT-C-TTCC--A-AG-GATTATGTC-CAGTTTTC-A-ATCCATCCTAT-AAATCTTT-TGTG-AGCATGGTTA-TGCC-AGTAGGTGTC-CGAGACACATGTTTGTGT---CGTGATCT---TCGTT-------TCCATCTCTCTTTTA-GT-TTAGAACAGGGGT--CAAACCTTACGGCTCCACACAGTGA-TTGAA------TA---C--AGAGGGTCGGT-C-GCC-GCCTTA-TCA-TC--CGA-C-GTTTCCATGTTTTTGAAAATTTCTAAC-GGAAA--GGT-TTTGTACGGT--ATAACG-TCAT--AAAATG-TA-TT-ATAGA-CGTCATATTTATA-TAAGTGTAT--ACTG-ATGTGT--TG-GTGT-AT-GCCAT---ACAC-TTTTA-TCTATATAGA-TAGTATTT-AAAACGAT----C--GTTGGGATTAACA-ATTAAAATGT-----GATCAG-ACA-A-CTTTGCAAA-CAATAAA-CGCTTGTTCTTT-CAGACG-TGCAAAGAA-ATTCGAGTTGGC-CGACCGTAATTACTGATATTGTGCACT--TTTTAAAGTACCCGGGTAATTCACCTA--TTT--GTGTTG-TGACC-AAAGTCACTTAAGA-TTTTGTCTTGTTAG---TG-AAAATTGCG-TTAT--CAT-C----CATTAA---ACA-ATAGG-C-AAAAT------------------ATGAAGTA--AAGATTTGGGTGA----GTTGAGTGT--GATTG-ACATATC-TAGA-AAT--T---TGCGT-G-TTTT-----TCTGG-GGAC-ACCC
gi|3 : CGAGAGTTGT--CCCA-GAA--AAACACGAA-CATT-T---TATG-TAT-TTTT-TGTGA-AACTTCTAG--T---TAT------TCTTTTATTAT-TTGG--TGTACACAA-CAAAATG-T------CATT-ATCTGAAT----ATC--G---CTGGCTG----AAATTT--TTAATG-CATTTTGT----CTG---TAAAT--A-CATT-------TT---ATCACA----CTTT--A---AACCCAG-TC-T-TA-CAT-A-----A-AG-CT-GCCG--GCGC-AAC--GCTG-A-CG-A-C-GT--C-A----AAA--CG-T-AA--C---------------------------------------ATTCATT--TTTTCTC-AAA-TAC-CGCTCC----------AAATTGTGGAAAAACA--T---TTCTTTA--T-ATC-GCTT---C-ATCCCTACTGCATT------------------AAAAA--CGGTTGT-CTGATACT-AAGAGATG---TCGG--AA---------ATTG-T-----G-ATTACTT--CGC---GG---CGAATTCTC-AGCTTCAC-GGTAAAATCCCT-TTCC--TCA-CAA-ATTA---------TTT----AA-TATCGCAGGA-A---------AGA-ATGGCC-AAACAT-CTAGTATTGA-CG-TCC-AT-CACCCT---AT---TTTTAA-GTTTT---T--CGT-CTCT--TTTTG--TCA--G-TTCT--ACCACGCGCCT-C-TTTT--ATAG-G-TTA---C-CA--CTCC-A-TTCAATCCT-T-AAACCTTT-TG-G-GTCATGTGTA-TACC-AAATTGT--C-CGAGACACATGTTT-TGTGGACGTG-TCTA--TCGTT-------TACATCTTTCTTTTT-GT-TT-AATTGGGGGC--CAAACCT--CGCCTCCAAACAGT-A-TTGAA------TA---CCAA---ATTCGGTGC-GCC-GCATCA--CATTC--CGA-CTGTTGCCAT-TTTTTGAAAATTTCTAACGGG-AA--GGTGTTTGTAC-GT--AAAACGTTCATAAAAAATCTTATTTAAT-GA-CGTCA--TTTATATTAATTTTAT--ATTG-ACATGT--TTGGT-T-AG-ACCAT--AACAC-TTTCATTTGATATA-A-TTATATTTAAAAAT-AT--AAT--GTTTGC-T--ACATA-TAAAAAATAATCGGAGC-C-A-A-ATTTT--CAAC-CG--AAGTTGC---TCTTTT-CGAAC--TGC-AAAAA-A-TCG-GTGCGC-CG------ATTACTGATATTTTGCGGCTTTTTTAAA-TGCC--GTT--TTCA--TA--TTTTGGT-TTGTTAACC-AAAAC--CTTGATA-TTTT---TT----GC--TG-AAAATTACGATTATACCATCC----CACT-A---ACA-ATAGG-CAAAAAT------------------TT--TGTA--AG---TT-GGTGAC---GT--AGTTT--A--TGAAAATATC-TAAATAAGTTT---T-CGC-GTTTTT-----TCT-GTGGACAAACCCTCGT
gi|4 : aCGAGGGTTGT--CCCA-GAA--AAACACGAA-CATT-T---TATA-TAT-TTTT-TGTGA-AACTTCTAG--T--ATAT------C--TTTAGTAT-TTGG--T--ACATAA-CAAAATGAT------CATA-TTCTGAAT----ATC--G---CTG--TG----AAATTT--T-AATG-CATTTTGT----CTG---TAAAT--AACATT-------TT--TATCACA----CTTT--A---A--CCAG-TC-T-TA-CAT-ATGATAATAG-CT-GCCG--GGGC-AAC--GCTG-A-CG-A-C-GT--C-A----AAA--CG-T-AA--CT-T-C-G--T--GAT-GT--CTGTTAAC-G----TCAT-ATTCATT--TTTTCTC-AAAATAC-CG-TCC----------A--------------A--T---TTCTT-A--T-ATC-GCTT---C-ATCC--A-TGCATT------------------AAAAA--CG-TT-T-CTGA-ACT-AAGAGATG---TCGG--AA---------ATTA-T-----G-AT-ACTT--CGC---GG---CGAATT-TC-AG-T-CAT-G-TAAAATCTCT-TTCC--TCC-CAA-ATGATT------TTT-----AA-TG-C--AGGA-A---------AGA-ATG--C-AAAAAT-CTAGTA-TGA-CG-TCC-AC-CACCTTCTTAT---TTTTAA-GTTTT---T--CGT-CTCT--TTTTG--TCA--G-T-CT--ACCACGCGCCT-C-TTTC--ATAG-GATTA---C-CA--CTCC-A-ATC-ATCCT-T-AAACCTTT-TG-G-GTCATCTGTA-TACC-AAT--GT--C-CGAGACACATGTTCGTGA---CGT--TCTA--TCGTT-------TACATCTCTCTTTTT-GT-TT-GAATTGGGGC--CAAACCT--CGT-TCCAAACAGT-A-TTGAA-----TTA---C--A---ATTCGGTGC-GCC-GCATCA-TCA-TC--CGA-C-GTTGCC-T-TTTTTAAAAATTTCTAAC-GG-AA--AGTGTTTGTAC-GT--ATAAAG-TCAT-AAAAATGTTATTT-AT-GA-CGTCAT-TTTATA-TAATTTTAT--ATTG-ACATGT--TT-GT-T-AG-ACCAT--AACAC-TTTTA-TTGATATA-A-TTATATTT-AAAAT-AT--AAT--GTTTG--T--ACA-A-TAAAATATA----GAGC-A-A-A-A-TTT--CAAC-CG--AAG-TGC---TCTTTT-CGAACG-TGCAAAAAA-A-TCG-GTGCGC-CG------ATTACTGATATTTTGCACC--TTTTAAA-TGCC--GTT--TTCA--TA--TTT--GT-TTG-TAACC-AAAAC--CTTGATA-TTTT---TT----G---TG-AAAATTACGATTATACCAT-C----CACT-A---ACA-ATAGG-C-AAAAT------------------TT--AGTA--AAG-TTT-GGTGAC---GT--AGTTT--A--TG-AAATATC-TAAA-AAG--T---T-CGC-G-TTTT-----TCT-G-GGAC-AACCCTCGTA
gi|5 : AAACTTCTGTTCCCTTCA-CAA--TGATTGTGTTTTTTT----AA-TG-CGTAGCA-GCTATATAATAGATATG--CAAAAAATGCTAGTA-TGACCG-TTC--T-TATCTTC--ACAGGTTTTAA-GGTTA---TGCCGT-TTCT--
gi|5 : aT---TTTTAA-GTTTTGGTT--CGTTCTCTAATTTTGATTCG--G-TTCCTCACCACGCACCTACGTTCCGCATAA-GATTA---T-CT--CACC-ACACC-ATCCT-TGAAACTTTT-TA-GTGTCATGTGTAATACC-AATAG-T--C-CGAGACACATGTT-GTGT---CGT--TCTA--TGATTGCTTTTGTTCATCTTTCTTTTTAGT-TT-GAATAGAGATTTCAAAC-T--CGC-TCCACAGCGT-A-T-GCA-----TTA---C--A---AT-CGTTGCTGCC-GCATTAGTCA-TC--TGAAC-GTTGCCAT-TTTT--GAAATTTCTAAC-AG-A---GGTGTT-GTAC-GT--ATA-CG-TCAT-AAAA-TGTTATTT-TA-GAGTATC-T-TTTATA-TAATTTTAT--ACTG-ACAAG---TT-GT-T-AGAACCCT--AACGCTTTTTA-TTGCTACG-ATTTATATTT-AAAAT-AT--AAT--GTTTG--T--AAA-A-T-AAATATA----GAGC-GCA-A-A-TTT--TAACGCG--AAG-TGC----CTTTT--GAACG-TGCAAAAAA-A-TCG-GTGCGTGCG------ATctgcctttttaagttttggttcgttctctaattttgattcggttcctcaccacgcacctacgttccgcataagattatctcaccacaccatccttgaaactttttagtgtcatgtgtaataccaatagtccgagacacatgttgtgtcgttctatgattgcttttgttcatctttctttttagtttgaatagagatttcaaactcgctccacagcgtatgcattacaatcgttgctgccgcattagtcatctgaacgttgccatttttgaaatttctaacagaggtgttgtacgtatacgtcataaaatgttattttagagtatcttttatataattttatactgacaagttgttagaaccctaacgctttttattgctacgatttatatttaaaatataatgtttgtaaaataaatatagagcgcaaattttaacgcgaagtgccttttgaacgtgcaaaaaaatcggtgcgtgcgatgggttctatctaatgaatagaattgctcctttgccaggcggaggaagtggcactattattaaaaaaaattgcctgttcattttttctcccccaatattcttcgtttggtcagacccgattaaccattacatgatttatttttttatttaaaaattacgattattatcgacatactatagacgtataggtcgaaatacaaggcgaatatcaactttggtacaaagtgtgtgactgcgtagttttaatgtaaaaatcgtaaaaagtggatcgccgttttttttttctgggacacccttatacagctaaaatat
gi|5 : aaaacttctgttcccttcacaatgattgtgtttttttaatgcgtagcagctatataatagatatgcaaaaaatgctagtatgaccgttcttatcttcacaggttttaaggttatgccgtttctctgccTA-TTTT---TT----TATTTA-AAAATTACGATTAT--TAT-CGACATACT-ATAGACGTATAGGTC-GAAATACAAGGCGAATATCAACTTT--GGTACAAAG-TGT-G-TGACTGCGT--AGTTTTAA--TGTAAAAATCGTAAA-AAG--TGGAT-CGCCG-TTTTTTTTTTCT-G-GGAC--ACCCTTATAgggttctatctaatgaatagaattgctcctttgccaggcggaggaagtggcactattattaaaaaaaattgcctgttcattttttctcccccaatattcttcgtttggtcagacccgattaaccattacatgatttatttttttatttaaaaattacgattattatcgacatactatagacgtataggtcgaaatacaaggcgaatatcaactttggtacaaagtgtgtgactgcgtagttttaatgtaaaaatcgtaaaaagtggatcgccgttttttttttctgggacacccttatacagctaaaatat
gi|6 : aaaacttctgttcccttcacaatgattgtgtttttttaatgcgtagcagctatataatagatatgcaaaaaatgctagtatgaccgttcttatcttcacaggttttaaggttatgccgtttctctgcctttttaagttttggttcgttctctaattttgattcggttcctcaccacgcacctacgttccgcataagattatctcaccacaccatccttgaaactttttagtgtcatgtgtaataccaatagtccgagacacatgttgtgtcgttctatgattgcttttgttcatctttctttttagtttgaatagagatttcaaactcgctccacagcgtatgcattacaatcgttgctgccgcattagtcatctgaacgttgccatttttgaaatttctaacagaggtgttgtacgtatacgtcataaaatgttattttagagtatcttttatataattttatactgacaagttgttagaaccctaacgctttttattgctacgatttatatttaaaatataatgtttgtaaaataaatatagagcgcaaattttaacgcgaagtgccttttgaacgtgcaaaaaaatcggtgcgtgcgatgggttctatctaatgaatagaattgctcctttgccaggcggaggaagtggcactattattaaaaaaaattgcctgttcattttttctcccccaatattcttcgtttggtcagacccgattaaccattacatgattCGAGGGTTGT--CCCA-GAA--AAACGCGAA-CATT-T---CATA-TAT-TTTT-TGTGA-AACTTCTAG--T--ATAT------C--ATTATTAT-TTGA--A--ACACAA-CAAAATGAT------CATT-TTCTGAATATCGATC--G---CTG--TG----AAA-TT--TTACTG-CATTTTGT----CTG---TAAAT-----ACT-------TT--TATCACA----CTTT--A---A--CCAG-TC-T-TA-C-T-------ATAG-CT-GCCG--GCGC-AAC--GCTG-A-CG---C-AT--C------AAA--CG-TAAA--CT-T-C-G--T--GA---T--TTGTTAACGG----TCAT-A-TCATCTGTTTTCTC-AAAATA--CG-TCC----------ATATGAG-----AAAA--TACATTC-C-A--T-ATC-GCTTAC-C-ATNN--N-NNNNNNNNNNNNNNNNNNNNNNAAAAAAA--CG-TT-T-CTGA-ACT-AAGAGATG---Tcagctaaaatat
gi|7 : ta-TTTTA-TTGATATA-A-TTATATTT-AAAAT-AT--TAT--GTTTG--T--ACA-A-TAAAATATA----GACC-A-A-A-A-TTT--CAAC-CG--AAG-TGC---TCTTTT-CGAACG-TGCAAAAAA-A-TCG-GTGTGC-CG------ATTACTGATATTTTGCACC--TTTTAAA-TGCC--GTT--TTCA--TA--TTT--GT-TTG-TAACC-AAAAC--CTTAATA-TTTT---TT----G---TG-AAAATTACTATTATACCAT-C----CACT-A---ACA-ATAGG-C-AAATT------------------TT--TGTA--AAG-TTT-GGTGAC---GT--AGTTT--A--TG-AAATATC-TAAA-AAG--T---T-CGC-G-TTTT-----TCA-G-GGAC-AACCCTCGTAg
gi|8 : -TTTTA-TTGATATA-G-TTATATTT-AAAAT-AC--AAC--GTTTG--T--GAA-A-TAAAATATA----GAGC-G-A-A-A-TTT--CAAC-CG--AAG-TGC---TCTTTT-CGAACG-TGCAAAAAA-A-TCG-GTGGGC-CG------ATTACTGATATTTTGCACC--TTTTAAA-TGCC--GTT--TTCA--TA--TTT--GT-TTG-TGACCAAAAAC--CTTAAGATTTTT---TT----G---TG-AAAATTACGATTATATCAT-C----CATT-A---ACA-ATCGT-C-AAAAT------------------TT--AGTA--AAG-TTT-GATGAC---GT--AGTT
gi|9 : AAAATG-----------T-ATCTGGAC----ATA--GTCCCTG--TGCCAAAAGTTTGTTCAATG---TCTTGTAGTCCTGAGTCAAATTTAACATTATCATTATT--TATCACAGTTTCTTT--ATATG--CCAT-TC-TCTT-CAC-AT---AATAG-CT-GC-G--GCGCTAAC--TCTG-A-CGGA-CTGC--C-A----AAAA-CG-T-AA--TT-TTC-A--TTCGATTGCTACTGTTAAC-GAAGTCCAT-ATTTATA--TCTTCTCTAAAAT
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|16 ): ATTGAAATAGTACTAATGAAAACTAAAGTGAAGTA
Alignments
lowQualScore : 111 11111 222222222 11111 222222 1111 1111 1111 1111111 11 3333333 111111 11 11 111111111 1 11 8888888888888888888888 111111 3333 11111 555555555555555555 11 11111 4444444444444 2222222 1 1 11 111 111 1 1 1 111 11 222222 11111 44444444444 1111 1111 1111 111 1111111 11 11 11 111 111 1 1 111 11 111 22 111 2222222 111 222222222222222222 11 1 11111 11 11 111 111 1111111 11 1111 111 111111 111 22222222 1111 111 444444444444444444 111 11111 1 111111 111 11111
lowQualScore : 99 6 99 6 6 111 6 6 6 6 11111 111111111 6 33333 6 5 222222 5 2222 66 888 66 0000 6 66 0 5 3333 777 55 3333333 888 8888 55 777 55 4 4 4 4 0000000 3 4 4 55 4 66 4 4 555 4 66 000000 00 4 5 11 5 5 7777777 777777 1 5 333333333 1 888 0 1 00 6 7777777777777777777777 111111 6 99 6 6 0000 8 44444 999999999999999999 11 8 8 8 8 8 55555 2222222222222 6666666 0 0 33 777 777 0 0 6 0 666 8 11 8 88 0 333333 77777 8 8 4 22222222222 8 0 4444 8 8 8 8 8 0000 7777 111 6 3 9999999 9999999 11 11 8 0 11 8 8 99 6 111 6 000 6 3 3 6 6 6 111 6 6 44 99 6 1 111 33 111 6666666 1 88 6 6 4 99 111 6 6 1 6 6 444444444444444444 0 8 8 88 8 11 6 8 0 8 999 8 33333 0 8 11 0 8 88 0 0 0 8888 8 999 8 0 11 8 111 8 8 8 8 111 5 0 5 5 5 5 5 1111111 33 77 0 5 5 2222 999 5 5 5 77 5 77 5 000 5 5 5 5 5 5 666666 99 6 99 99 99 99 99 6 6 6 99 5 000 11111111 5 66 5 2222 5 000 5 5 5 1 222222222222222222 888 77 5 5 000 77 11111 3 6 6 111111 6 111 66666 6 6 6
lowQualScore : .. . .. . . ... . . . . ..... ......... . ..... . . ...... . .... .. ... .. .... . .. . . .... ... .. ....... ... .... .. ... .. . . . . ....... . . . .. . .. . . ... . .. ...... .. . . .. . . ....... ...... . . ......... . ... . . .. . ...................... ...... . .. . . .... . ..... .................. .. . . . . . ..... ............. ....... . . .. ... ... . . . . ... . .. . .. . ...... ..... . . . ........... . . .... . . . . . .... .... ... . . ....... ....... .. .. . . .. . . .. . ... . ... . . . . . . ... . . .. .. . . ... .. ... ....... . .. . . . .. ... . . . . . .................. . . . .. . .. . . . . ... . ..... . . .. . . .. . . . .... . ... . . .. . ... . . . . ... . . . . . . . ....... .. .. . . . .... ... . . . .. . .. . ... . . . . . . ...... .. . .. .. .. .. .. . . . .. . ... ........ . .. . .... . ... . . . . .................. ... .. . . ... .. ..... . . . ...... . ... ..... . . .
lowQualScore : 22 7 22 7 7 777 7 7 7 7 88888 000000000 7 77777 7 0 111111 7 1111 99 888 99 6666 2 99 1 0 9999 888 55 0000000 999 5555 55 000 00 0 0 0 0 2222222 4 0 0 55 0 11 4 4 333 4 11 333333 66 4 0 99 0 0 9999999 111111 4 7 111111111 4 111 4 4 33 7 8888888888888888888888 888888 7 22 7 7 6666 0 88888 000000000000000000 00 0 0 0 0 0 00000 8888888888888 0000000 0 0 88 555 555 0 0 5 0 222 0 00 0 88 8 000000 88888 0 0 0 00000000000 0 8 0000 8 0 0 0 0 8888 0000 777 7 2 5555555 3333333 00 00 0 8 00 0 0 22 7 777 7 222 7 3 3 7 7 7 777 7 7 22 22 7 7 777 00 888 0000000 0 11 7 7 8 22 777 7 7 0 7 7 777777777777777777 8 0 0 88 0 00 0 0 8 0 666 0 88888 8 0 00 8 0 88 8 8 8 4444 0 666 0 8 00 0 888 0 0 0 0 888 7 1 7 7 7 7 7 0000000 66 99 7 7 7 1111 666 7 7 7 99 7 99 7 000 7 7 7 7 7 7 444444 22 7 22 22 22 22 22 7 7 7 22 7 000 44444444 7 77 7 1111 7 000 7 7 7 7 111111111111111111 444 99 7 7 000 99 88888 3 7 7 888888 7 777 77777 7 7 7
consensus : CGAGGGTTGT--CCCA-GAA--AAACGCGAA-CATT-T---CATA-TAT-TTTT-TGTGA-AACTTCTAG--T--ATAT------C--TTTATTAT-TTGG--T--ACACAA-CAAAATGAT------CATT-TTCTGAAT----ATC--G---CTG--TG----AAATTT--TTAATG-CATTTTGT----CTG---TAAAT--AACATT-------TT--TATCACA----CTTT--A---A--CCAG-TC-T-TA-CAT-AT--TAATAG-CT-GCCG--GCGC-AAC--GCTG-A-CG-A-C-GT--C-A----AAA--CG-T-AA--CT-T-C-G--T--GAT-GT--CTGTTAAC-G----TCAT-ATTCATT--TCTTCTC-AAAATAC-CG-TCC----------ACA---------AACA--T---TTCTC-A--T-ATC-GCTTA--C-ATCC--A-TGCATT------------------AAAAA--CG-TT-T-CTGA-ACT-AAGAGATG---TCGG--AG---------ATTG-T-----G-AT-ACTT--CGC---GG---CGAATT-TC-AGCT-CAC-G-TGAAATCTCT-TTCC--TCA-CAA-ATGATT------TTTT----AA-TG-CGTAGGA-A---------AGA-ATG--C-AAANAT-CTAGTA-TGA-CG-TCC-AT-CACCCTC--AT---TTTTAA-GTTTT---T--CGT-CTCT--TTTTG--TCG--G-TTCT--ACCACGCGCCT-C-TTCC--ATAG-GATTA---C-CA--CTCC-A-ATC-ATCCT-T-AAACCTTT-TG-G-GTCATGTGTA-TACC-AATAGGT--C-CGAGACACATGTTTGTGT---CGTG-TCTA--TCGTT-------TNCATCTCTCTTTTT-GT-TT-GAACGGGGGT--CAAACCTC---G-C-TCCACANAGT-A-TTGAA-----TTA---C--A---ATTCGGTGC-GCC-GCATTA-TCA-TC--CGA-C-GTTGCCAT-TTTTTGAAAATTTCTAAC-GG-AA--GGTGTTTGTAC-GT--ATAACG-TCAT-AAAAATGTTATTT-AT-GA-CGTCAT-TTTATA-TAATTTTAT--ATTG-ACATGT--TT-GT-T-AG-ACCAT--AACGC-TTTTA-TTGATATA-A-TTATATTT-AAAAT-AT--AAC--GTTTG--T--ACA-A-TAAAATATA----GAGC-G-A-A-A-TTT--CAAC-CG--AAG-TGC---TCTTTT-CGAACG-TGCAAAAAA-A-TCG-GTGCGC-CG------ATTACTGATATTTTGCACC--TTTTAAA-TGCC--GTT--TTCA--TA--TTT--GT-TTG-TGACC-AAAAC--CTTAATA-TTTT---TT----G---TG-AAAATTACGATTATACCAT-C----CACT-A---ACA-ATAGG-C-AAAAT------------------TT--AGTA--AAG-TTT-GGTGAC---GT--AGTTT--A--TG-AAATATC-TAAA-AAG--T---T-CGC-G-TTTT-----TCT-G-GGAC-AACCCTCGTA
Reference ( family-1733 ) : CGAGGGTTGT--CCCA-GAA--AAACGCGAA-CATT-T---CATA-TAT-TTTT-TGTGA-AACTTCTAG--T--ATAT------C--TTTATTAT-TTGG--T--ACACAA-CAAAATGAT------CATT-TTCTGAAT----ATC--G---CTG--TG----AAATTT--TTAATG-CATTTTGT----CTG---TAAAT--AACATT-------TT--TATCACA----CTTT--A---A--CCAG-TC-T-TA-CAT-AT--TAATAG-CT-GCCG--GCGC-AAC--GCTG-A-CG-A-C-GT--C-A----AAA--CG-T-AA--CT-T-C-G--T--GAT-GT--CTGTTAAC-G----TCAT-ATTCATT--TCTTCTC-AAAATAC-CG-TCC----------ACA---------AACA--T---TTCTC-A--T-ATC-GCTTA--C-ATCC--A-TGCATT------------------AAAAA--CG-TT-T-CTGA-ACT-AAGAGATG---TCGG--AG---------ATTG-T-----G-AT-ACTT--CGC---GG---CGAATT-TC-AGCT-CAC-G-TGAAATCTCT-TTCC--TCA-CAA-ATGATT------TTTT----AA-TG-CGTAGGA-A---------AGA-ATG--C-AAANAT-CTAGTA-TGA-CG-TCC-AT-CACCCTC--AT---TTTTAA-GTTTT---T--CGT-CTCT--TTTTG--TCG--G-TTCT--ACCACGCGCCT-C-TTCC--ATAG-GATTA---C-CA--CTCC-A-ATC-ATCCT-T-AAACCTTT-TG-G-GTCATGTGTA-TACC-AATAGGT--C-CGAGACACATGTTTGTGT---CGTG-TCTA--TCGTT-------TNCATCTCTCTTTTT-GT-TT-GAACGGGGGT--CAAACCTC---G-C-TCCACANAGT-A-TTGAA-----TTA---C--A---ATTCGGTGC-GCC-GCATTA-TCA-TC--CGA-C-GTTGCCAT-TTTTTGAAAATTTCTAAC-GG-AA--GGTGTTTGTAC-GT--ATAACG-TCAT-AAAAATGTTATTT-AT-GA-CGTCAT-TTTATA-TAATTTTAT--ATTG-ACATGT--TT-GT-T-AG-ACCAT--AACGC-TTTTA-TTGATATA-A-TTATATTT-AAAAT-AT--AAC--GTTTG--T--ACA-A-TAAAATATA----GAGC-G-A-A-A-TTT--CAAC-CG--AAG-TGC---TCTTTT-CGAACG-TGCAAAAAA-A-TCG-GTGCGC-CG------ATTACTGATATTTTGCACC--TTTTAAA-TGCC--GTT--TTCA--TA--TTT--GT-TTG-TGACC-AAAAC--CTTAATA-TTTT---TT----G---TG-AAAATTACGATTATACCAT-C----CACT-A---ACA-ATAGG-C-AAAAT------------------TT--AGTA--AAG-TTT-GGTGAC---GT--AGTTT--A--TG-AAATATC-TAAA-AAG--T---T-CGC-G-TTTT-----TCT-G-GGAC-AACCCTCGTA
gi|1 : GAGGGTTGTGTCCCATGAA--CAACGCGAA-CGTT-TGCTCATAATATATTTC-GGTAATAGCTTCTAA--TTCATACACTCGAC--TATATTGC-TTGGGCT--ACACAGGCAAAATGATT-----CATT-T-CTGAAT-----TC--G---CTG--TG----AAATTT--TTAATGGCATTCTGT----CTG---TAA-T--AAATTT-------TT--TATCACA----CTTTCAA---A--CTAGGTC-T-TA-CAT-AA--TAATCGACT-ACCG---CGC-AAC--GTTG-A-CG-AGC-GTTTC-A----AAAGTCG-T-GAG-CTAT-C-GAAT--GAT-GT--CTGTTAAC-G----T-ATCATTCATT--CCTTCTCCAAAATATTCG-TCCTCACTATGTGACG---------AACACAT---TTATC-A--TGATCAGCTAAACCGAGCC--A--GCTTT------------------AATAA--CA-TT-T-CT-A-AGT-AAGAGATAAGTTTGGTAAG---------ATTGGT-----GGAT-ACTT--CGC---GGGCGCAAGTT-TC-AGTT-GAC-T-TGAAATCTCT-TTCC--TAAACAA-ATGATT------TTTTTGTTGA-TG-CGAGGGACA---------AGG-A------AAGCAT--------TGA-GG-TCCCATTCACCCAG--AT---TTTTAAAGTTTA---T--CGT-CT----TTTTG--TCACTG-TTCT--ACCAAGCACCT-C-CTCC--ATAGCGATTA---C-CA--CTCCCA-ACC-ATCCT-T-AA-CCTTTGTG-T-GCCA-GTGTA-TACCTAATAGGT--CGCGAGACACATGTTTGT-T---CATT-TCCAACTCGTA-------TTCATCTCTCTTTAA-GTATT-GAACAGCGAT--CAAACCTT---G-CATCC-CAGAGT-AATTGGAAAAGGTTGAGCT--A---ATTTCGTGC-GCCAGCATTA-T-A-TCGCCGATC-GTTGCCAT-TTT---AAAATTGTTAAC-GG-GAATGGTGTGTGTAC-GTTTATAACG-CCAT-AAAAATGTTATTT-AT-GA-CGTCAT-TATATA-TAATTT-ATTGATTGGACATATGGTT-GT-TGAG-ACCATCCAACGC-TTT-A-TTGATTTA-A-TTATATTA-AGAAT-AGCGAACATGTTTG--T--GAA-A-TAAAATGAA----GAGC-G-A-ATA-TTT--CAGC-CG--AAG-TGC---TCTTTTTCGAACGGTGAAAGAAAGA-TCG--TGCGT-CG------GTTACTG-TATTTTGCACC--TTTTAAA-TGCC--GTT--TTCA--TAATTTT--GT-TTG-TGATC-AAAAC--CTTAATG-ATTT---TT----G---TGTAAAATTACGATTATATCAT-C----ATGT-A---ACA--TAGG-C-AAA-T------------------AT--AGTA--ACG-TTT-GGTGAC---GT--AGTTT--A--TA-AAATATC-TAAA-AAG--T---T-CGA-----TT-----TCT-G-GGAC-AACCCTCGTA
gi|10 : CGAGGGTTGT--CCCA-GAA--AAACGCGAA-CATT-T---CATA-TAT-TTTT-TGTGA-AACTTCTAG--T--ATAT------C--TTTATTAT-TTGA--T--ACACAA-CAAAATGAT------CATT-TTCTGAAT----ATC--G---CTG--TA----AAA-TT--TTAATG-CATTTTGT----CTG---TAAAT--AACATT-------CT--TATCACA----TTTT--G---A--CCAG-TC-T-TA-CA------TAATAG-CT-GCCG--GCGC-AA
gi|11 : taAAT--AACATT-------TT---ATCACA----CTTT--A---AACCCAG-TC-T-TATCAT-AT--TGA--G-CC-TCCG--GCGC-AAC--GCAG-A-GG-A-C-GA--C-ATAATAAA--GGCT-AG--CT-T-CGG--T--GAT-GT--
gi|12 : agttttagatatccctgttgagaaccagcagtgatcatgtacacatgacatacgcgcttggtactgtactgcatcgTGT----CTG---TTAAT--AACATT-------TT--TATCACA----CTTC--A---A--CTAG-TC-T-TA-CAT-A-----ATAA-CT-ACCG--GCGC-AAC--GTTG-A-CG-A-C-GT--C-A----AAA--CG-G-AG--CT-T-C-G--T--GAT-GT--CTGTTAAC-G----TCAT-ATTCATT--CCTTCTC-AAAATAT-CG-TCCACTATGTG--ACA---------AACA--T---TTATC-A--T-ATC-GCT
gi|13 : --G---CTG--TG----AAAGTT--TTA-TG-CATTTAGT----CTG---TAAAT--AACATT-------TT--AAACACA----CTTT--A---A--CCAG-TC-T-TA-CAT-AT-----TAG-AT-GCCG--GCGC-AAC--GCTG-A-CG-A-C-GT--C-A----AAA--CG-
gi|14 : --ATAG-GATCG---CGCA---TCG-ATATC-ATCCT-T-AAACCTTT-TG-T-GTCATGTG-A-TACC-AAT--GT--C-CGAGACACATGTTTGTGT---C
gi|15 : -GT-TT-GAACAGGGAT--CAAACCTT---G-C-TCCACAGAGT-A-TTGAA-----TTA---C--A---AT
gi|2 : CGAGGTATAT--CCCA-GAAGAAAATGCGAAACAGTGT---CGCA-TAT-TATTATGTTT-AACTTTTAAGCC--ATAT------C--ATT-TTATGTTGG--T--ACACAA--AAAATGATTTTTATCATTGTTCT-AAT----ATCAAG---CTG--TG----AAATTT--TTAAGG-AGTTTTGTA---CTG---TAAAT--AACGTT-------TTATTATCACA----CTTC--A---AT-CCAG-TCGT-CA-CATTAT--AGAAAG-CTAGCCGCTGCAC-AAAAAGCTGCATCG-A---GT--CGA----AAA--CG-T-AAAATT-T-C-G--T--GAT-GG--CCGT-----G----CCA---------------CT-----ATGC-TG--------------ACA---------AACA--T---TTCTC-ACAT-ATC-GCTGA--C-ACCC--A-TGCATG------------------AAAAAAACA-CT-TACTGA-ACTCAAGAGATG-----GG--AGCGAGTAACGATTG-TCATATG-AT-ACTTGCCGCTGTGG---CAAATT-TCGAGCT-CATTG-TGAAATCTCT-TTCC--TCA-CAAGATGATT------TTTT----AAGCG-CGTAGGATA---------AGA-TTG--C-AAG--T-CTAGTA-T-A-CGGTTC-AT-CATCCGC--AT---TTTTAA-A----------CGT----T--TTTTG--TCG--GATTTT--ACCGCGCACCT-C-TTCC--A-AG-GATTATGTC-CAGTTTTC-A-ATCCATCCTAT-AAATCTTT-TGTG-AGCATGGTTA-TGCC-AGTAGGTGTC-CGAGACACATGTTTGTGT---CGTGATCT---TCGTT-------TCCATCTCTCTTTTA-GT-TTAGAACAGGGGT--CAAACCTTACGG-C-TCCACACAGTGA-TTGAA------TA---C--AGAGGGTCGGT-C-GCC-GCCTTA-TCA-TC--CGA-C-GTTTCCATGTTTTTGAAAATTTCTAAC-GGAAA--GGT-TTTGTACGGT--ATAACG-TCAT--AAAATG-TA-TT-ATAGA-CGTCATATTTATA-TAAGTGTAT--ACTG-ATGTGT--TG-GTGT-AT-GCCAT---ACAC-TTTTA-TCTATATAGA-TAGTATTT-AAAACGAT----C--GTTGGGATTAACA-ATTAAAATGT-----GATCAG-ACA-A-CTTTGCAAA-CAATAAA-CGCTTGTTCTTT-CAGACG-TGCAAAGAA-ATTCGAGTTGGC-CGACCGTAATTACTGATATTGTGCACT--TTTTAAAGTACCCGGGTAATTCACCTA--TTT--GTGTTG-TGACC-AAAGTCACTTAAGA-TTTTGTCTTGTTAG---TG-AAAATTGCG-TTAT--CAT-C----CATTAA---ACA-ATAGG-C-AAAAT------------------ATGAAGTA--AAGATTTGGGTGA----GTTGAGTGT--GATTG-ACATATC-TAGA-AAT--T---TGCGT-G-TTTT-----TCTGG-GGAC-ACCC
gi|3 : CGAGAGTTGT--CCCA-GAA--AAACACGAA-CATT-T---TATG-TAT-TTTT-TGTGA-AACTTCTAG--T---TAT------TCTTTTATTAT-TTGG--TGTACACAA-CAAAATG-T------CATT-ATCTGAAT----ATC--G---CTGGCTG----AAATTT--TTAATG-CATTTTGT----CTG---TAAAT--A-CATT-------TT---ATCACA----CTTT--A---AACCCAG-TC-T-TA-CAT-A-----A-AG-CT-GCCG--GCGC-AAC--GCTG-A-CG-A-C-GT--C-A----AAA--CG-T-AA--C---------------------------------------ATTCATT--TTTTCTC-AAA-TAC-CGCTCC----------AAATTGTGGAAAAACA--T---TTCTTTA--T-ATC-GCTT---C-ATCCCTACTGCATT------------------AAAAA--CGGTTGT-CTGATACT-AAGAGATG---TCGG--AA---------ATTG-T-----G-ATTACTT--CGC---GG---CGAATTCTC-AGCTTCAC-GGTAAAATCCCT-TTCC--TCA-CAA-ATTA---------TTT----AA-TATCGCAGGA-A---------AGA-ATGGCC-AAACAT-CTAGTATTGA-CG-TCC-AT-CACCCT---AT---TTTTAA-GTTTT---T--CGT-CTCT--TTTTG--TCA--G-TTCT--ACCACGCGCCT-C-TTTT--ATAG-G-TTA---C-CA--CTCC-A-TTCAATCCT-T-AAACCTTT-TG-G-GTCATGTGTA-TACC-AAATTGT--C-CGAGACACATGTTT-TGTGGACGTG-TCTA--TCGTT-------TACATCTTTCTTTTT-GT-TT-AATTGGGGGC--CAAACCTC---GCC-TCCAAACAGT-A-TTGAA------TA---CCAA---ATTCGGTGC-GCC-GCATCA--CATTC--CGA-CTGTTGCCAT-TTTTTGAAAATTTCTAACGGG-AA--GGTGTTTGTAC-GT--AAAACGTTCATAAAAAATCTTATTTAAT-GA-CGTCA--TTTATATTAATTTTAT--ATTG-ACATGT--TTGGT-T-AG-ACCAT--AACAC-TTTCATTTGATATA-A-TTATATTTAAAAAT-AT--AAT--GTTTGC-T--ACATA-TAAAAAATAATCGGAGC-C-A-A-ATTTT--CAAC-CG--AAGTTGC---TCTTTT-CGAAC--TGC-AAAAA-A-TCG-GTGCGC-CG------ATTACTGATATTTTGCGGCTTTTTTAAA-TGCC--GTT--TTCA--TA--TTTTGGT-TTGTTAACC-AAAAC--CTTGATA-TTTT---TT----GC--TG-AAAATTACGATTATACCATCC----CACT-A---ACA-ATAGG-CAAAAAT------------------TT--TGTA--AG---TT-GGTGAC---GT--AGTTT--A--TGAAAATATC-TAAATAAGTTT---T-CGC-GTTTTT-----TCT-GTGGACAAACCCTCGT
gi|4 : aCGAGGGTTGT--CCCA-GAA--AAACACGAA-CATT-T---TATA-TAT-TTTT-TGTGA-AACTTCTAG--T--ATAT------C--TTTAGTAT-TTGG--T--ACATAA-CAAAATGAT------CATA-TTCTGAAT----ATC--G---CTG--TG----AAATTT--T-AATG-CATTTTGT----CTG---TAAAT--AACATT-------TT--TATCACA----CTTT--A---A--CCAG-TC-T-TA-CAT-ATGATAATAG-CT-GCCG--GGGC-AAC--GCTG-A-CG-A-C-GT--C-A----AAA--CG-T-AA--CT-T-C-G--T--GAT-GT--CTGTTAAC-G----TCAT-ATTCATT--TTTTCTC-AAAATAC-CG-TCC----------A--------------A--T---TTCTT-A--T-ATC-GCTT---C-ATCC--A-TGCATT------------------AAAAA--CG-TT-T-CTGA-ACT-AAGAGATG---TCGG--AA---------ATTA-T-----G-AT-ACTT--CGC---GG---CGAATT-TC-AG-T-CAT-G-TAAAATCTCT-TTCC--TCC-CAA-ATGATT------TTT-----AA-TG-C--AGGA-A---------AGA-ATG--C-AAAAAT-CTAGTA-TGA-CG-TCC-AC-CACCTTCTTAT---TTTTAA-GTTTT---T--CGT-CTCT--TTTTG--TCA--G-T-CT--ACCACGCGCCT-C-TTTC--ATAG-GATTA---C-CA--CTCC-A-ATC-ATCCT-T-AAACCTTT-TG-G-GTCATCTGTA-TACC-AAT--GT--C-CGAGACACATGTTCGTGA---CGT--TCTA--TCGTT-------TACATCTCTCTTTTT-GT-TT-GAATTGGGGC--CAAACCTC---G-T-TCCAAACAGT-A-TTGAA-----TTA---C--A---ATTCGGTGC-GCC-GCATCA-TCA-TC--CGA-C-GTTGCC-T-TTTTTAAAAATTTCTAAC-GG-AA--AGTGTTTGTAC-GT--ATAAAG-TCAT-AAAAATGTTATTT-AT-GA-CGTCAT-TTTATA-TAATTTTAT--ATTG-ACATGT--TT-GT-T-AG-ACCAT--AACAC-TTTTA-TTGATATA-A-TTATATTT-AAAAT-AT--AAT--GTTTG--T--ACA-A-TAAAATATA----GAGC-A-A-A-A-TTT--CAAC-CG--AAG-TGC---TCTTTT-CGAACG-TGCAAAAAA-A-TCG-GTGCGC-CG------ATTACTGATATTTTGCACC--TTTTAAA-TGCC--GTT--TTCA--TA--TTT--GT-TTG-TAACC-AAAAC--CTTGATA-TTTT---TT----G---TG-AAAATTACGATTATACCAT-C----CACT-A---ACA-ATAGG-C-AAAAT------------------TT--AGTA--AAG-TTT-GGTGAC---GT--AGTTT--A--TG-AAATATC-TAAA-AAG--T---T-CGC-G-TTTT-----TCT-G-GGAC-AACCCTCGTA
gi|5 : AAACTTCTGTTCCCTTCA-CAA--TGATTGTGTTTTTTT----AA-TG-CGTAGCA-GCTATATAATAGATATG--CAAAAAATGCTAGTA-TGACCG-TTC--T-TATCTTC--ACAGGTTTTAA-GGTTA---TGCCGT-TTCT--
gi|5 : aT---TTTTAA-GTTTTGGTT--CGTTCTCTAATTTTGATTCG--G-TTCCTCACCACGCACCTACGTTCCGCATAA-GATTA---T-CT--CACC-ACACC-ATCCT-TGAAACTTTT-TA-GTGTCATGTGTAATACC-AATAG-T--C-CGAGACACATGTT-GTGT---CGT--TCTA--TGATTGCTTTTGTTCATCTTTCTTTTTAGT-TT-GAATAGAGATTTCAAAC-TC---G-C-TCCACAGCGT-A-T-GCA-----TTA---C--A---AT-CGTTGCTGCC-GCATTAGTCA-TC--TGAAC-GTTGCCAT-TTTT--GAAATTTCTAAC-AG-A---GGTGTT-GTAC-GT--ATA-CG-TCAT-AAAA-TGTTATTT-TA-GAGTATC-T-TTTATA-TAATTTTAT--ACTG-ACAAG---TT-GT-T-AGAACCCT--AACGCTTTTTA-TTGCTACG-ATTTATATTT-AAAAT-AT--AAT--GTTTG--T--AAA-A-T-AAATATA----GAGC-GCA-A-A-TTT--TAACGCG--AAG-TGC----CTTTT--GAACG-TGCAAAAAA-A-TCG-GTGCGTGCG------ATctgcctttttaagttttggttcgttctctaattttgattcggttcctcaccacgcacctacgttccgcataagattatctcaccacaccatccttgaaactttttagtgtcatgtgtaataccaatagtccgagacacatgttgtgtcgttctatgattgcttttgttcatctttctttttagtttgaatagagatttcaaactcgctccacagcgtatgcattacaatcgttgctgccgcattagtcatctgaacgttgccatttttgaaatttctaacagaggtgttgtacgtatacgtcataaaatgttattttagagtatcttttatataattttatactgacaagttgttagaaccctaacgctttttattgctacgatttatatttaaaatataatgtttgtaaaataaatatagagcgcaaattttaacgcgaagtgccttttgaacgtgcaaaaaaatcggtgcgtgcgatgggttctatctaatgaatagaattgctcctttgccaggcggaggaagtggcactattattaaaaaaaattgcctgttcattttttctcccccaatattcttcgtttggtcagacccgattaaccattacatgatttatttttttatttaaaaattacgattattatcgacatactatagacgtataggtcgaaatacaaggcgaatatcaactttggtacaaagtgtgtgactgcgtagttttaatgtaaaaatcgtaaaaagtggatcgccgttttttttttctgggacacccttatacagctaaaatat
gi|5 : aaaacttctgttcccttcacaatgattgtgtttttttaatgcgtagcagctatataatagatatgcaaaaaatgctagtatgaccgttcttatcttcacaggttttaaggttatgccgtttctctgccTA-TTTT---TT----TATTTA-AAAATTACGATTAT--TAT-CGACATACT-ATAGACGTATAGGTC-GAAATACAAGGCGAATATCAACTTT--GGTACAAAG-TGT-G-TGACTGCGT--AGTTTTAA--TGTAAAAATCGTAAA-AAG--TGGAT-CGCCG-TTTTTTTTTTCT-G-GGAC--ACCCTTATAgggttctatctaatgaatagaattgctcctttgccaggcggaggaagtggcactattattaaaaaaaattgcctgttcattttttctcccccaatattcttcgtttggtcagacccgattaaccattacatgatttatttttttatttaaaaattacgattattatcgacatactatagacgtataggtcgaaatacaaggcgaatatcaactttggtacaaagtgtgtgactgcgtagttttaatgtaaaaatcgtaaaaagtggatcgccgttttttttttctgggacacccttatacagctaaaatat
gi|6 : aaaacttctgttcccttcacaatgattgtgtttttttaatgcgtagcagctatataatagatatgcaaaaaatgctagtatgaccgttcttatcttcacaggttttaaggttatgccgtttctctgcctttttaagttttggttcgttctctaattttgattcggttcctcaccacgcacctacgttccgcataagattatctcaccacaccatccttgaaactttttagtgtcatgtgtaataccaatagtccgagacacatgttgtgtcgttctatgattgcttttgttcatctttctttttagtttgaatagagatttcaaactcgctccacagcgtatgcattacaatcgttgctgccgcattagtcatctgaacgttgccatttttgaaatttctaacagaggtgttgtacgtatacgtcataaaatgttattttagagtatcttttatataattttatactgacaagttgttagaaccctaacgctttttattgctacgatttatatttaaaatataatgtttgtaaaataaatatagagcgcaaattttaacgcgaagtgccttttgaacgtgcaaaaaaatcggtgcgtgcgatgggttctatctaatgaatagaattgctcctttgccaggcggaggaagtggcactattattaaaaaaaattgcctgttcattttttctcccccaatattcttcgtttggtcagacccgattaaccattacatgattCGAGGGTTGT--CCCA-GAA--AAACGCGAA-CATT-T---CATA-TAT-TTTT-TGTGA-AACTTCTAG--T--ATAT------C--ATTATTAT-TTGA--A--ACACAA-CAAAATGAT------CATT-TTCTGAATATCGATC--G---CTG--TG----AAA-TT--TTACTG-CATTTTGT----CTG---TAAAT-----ACT-------TT--TATCACA----CTTT--A---A--CCAG-TC-T-TA-C-T-------ATAG-CT-GCCG--GCGC-AAC--GCTG-A-CG---C-AT--C------AAA--CG-TAAA--CT-T-C-G--T--GA---T--TTGTTAACGG----TCAT-A-TCATCTGTTTTCTC-AAAATA--CG-TCC----------ATATGAG-----AAAA--TACATTC-C-A--T-ATC-GCTTAC-C-ATNN--N-NNNNNNNNNNNNNNNNNNNNNNAAAAAAA--CG-TT-T-CTGA-ACT-AAGAGATG---Tcagctaaaatat
gi|7 : ta-TTTTA-TTGATATA-A-TTATATTT-AAAAT-AT--TAT--GTTTG--T--ACA-A-TAAAATATA----GACC-A-A-A-A-TTT--CAAC-CG--AAG-TGC---TCTTTT-CGAACG-TGCAAAAAA-A-TCG-GTGTGC-CG------ATTACTGATATTTTGCACC--TTTTAAA-TGCC--GTT--TTCA--TA--TTT--GT-TTG-TAACC-AAAAC--CTTAATA-TTTT---TT----G---TG-AAAATTACTATTATACCAT-C----CACT-A---ACA-ATAGG-C-AAATT------------------TT--TGTA--AAG-TTT-GGTGAC---GT--AGTTT--A--TG-AAATATC-TAAA-AAG--T---T-CGC-G-TTTT-----TCA-G-GGAC-AACCCTCGTAg
gi|8 : -TTTTA-TTGATATA-G-TTATATTT-AAAAT-AC--AAC--GTTTG--T--GAA-A-TAAAATATA----GAGC-G-A-A-A-TTT--CAAC-CG--AAG-TGC---TCTTTT-CGAACG-TGCAAAAAA-A-TCG-GTGGGC-CG------ATTACTGATATTTTGCACC--TTTTAAA-TGCC--GTT--TTCA--TA--TTT--GT-TTG-TGACCAAAAAC--CTTAAGATTTTT---TT----G---TG-AAAATTACGATTATATCAT-C----CATT-A---ACA-ATCGT-C-AAAAT------------------TT--AGTA--AAG-TTT-GATGAC---GT--AGTT
gi|9 : AAAATG-----------T-ATCTGGAC----ATA--GTCCCTG--TGCCAAAAGTTTGTTCAATG---TCTTGTAGTCCTGAGTCAAATTTAACATTATCATTATT--TATCACAGTTTCTTT--ATATG--CCAT-TC-TCTT-CAC-AT---AATAG-CT-GC-G--GCGCTAAC--TCTG-A-CGGA-CTGC--C-A----AAAA-CG-T-AA--TT-TTC-A--TTCGATTGCTACTGTTAAC-GAAGTCCAT-ATTTATA--TCTTCTCTAAAAT
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|16 ): ATTGAAATAGTACTAATGAAAACTAAAGTGAAGTA
Alignments
lowQualScore : 111 11111 222222222 11111 222222 1111 1111 1111 1111111 11 3333333 111111 11 11 111111111 1 11 8888888888888888888888 111111 3333 11111 555555555555555555 11 11111 4444444444444 2222222 1 1 11 111 111 1 1 1 111 11 222222 11111 44444444444 1111 1111 1111 111 1111111 11 11 11 111 111 1 1 111 11 111 22 111 2222222 111 222222222222222222 11 1 11111 11 11 111 111 1111111 11 1111 111 111111 111 22222222 1111 111 444444444444444444 111 11111 1 111111 111 11111
lowQualScore : 99 6 99 6 6 111 6 6 6 6 11111 111111111 6 33333 6 5 222222 5 2222 66 888 66 0000 6 66 0 5 3333 777 55 3333333 888 8888 55 777 55 4 4 4 4 0000000 3 4 4 55 4 66 4 4 555 4 66 000000 00 4 5 11 5 5 7777777 777777 1 5 333333333 1 888 0 1 00 6 7777777777777777777777 111111 6 99 6 6 0000 8 44444 999999999999999999 11 8 8 8 8 8 55555 2222222222222 6666666 0 0 33 777 777 0 0 6 0 666 8 11 8 88 0 333333 77777 8 8 4 22222222222 8 0 4444 8 8 8 8 8 0000 7777 111 6 3 9999999 9999999 11 11 8 0 11 8 8 99 6 111 6 000 6 3 3 6 6 6 111 6 6 44 99 6 1 111 33 111 6666666 1 88 6 6 4 99 111 6 6 1 6 6 444444444444444444 0 8 8 88 8 11 6 8 0 8 999 8 33333 0 8 11 0 8 88 0 0 0 8888 8 999 8 0 11 8 111 8 8 8 8 111 5 0 5 5 5 5 5 1111111 33 77 0 5 5 2222 999 5 5 5 77 5 77 5 000 5 5 5 5 5 5 666666 99 6 99 99 99 99 99 6 6 6 99 5 000 11111111 5 66 5 2222 5 000 5 5 5 1 222222222222222222 888 77 5 5 000 77 11111 3 6 6 111111 6 111 66666 6 6 6
lowQualScore : .. . .. . . ... . . . . ..... ......... . ..... . . ...... . .... .. ... .. .... . .. . . .... ... .. ....... ... .... .. ... .. . . . . ....... . . . .. . .. . . ... . .. ...... .. . . .. . . ....... ...... . . ......... . ... . . .. . ...................... ...... . .. . . .... . ..... .................. .. . . . . . ..... ............. ....... . . .. ... ... . . . . ... . .. . .. . ...... ..... . . . ........... . . .... . . . . . .... .... ... . . ....... ....... .. .. . . .. . . .. . ... . ... . . . . . . ... . . .. .. . . ... .. ... ....... . .. . . . .. ... . . . . . .................. . . . .. . .. . . . . ... . ..... . . .. . . .. . . . .... . ... . . .. . ... . . . . ... . . . . . . . ....... .. .. . . . .... ... . . . .. . .. . ... . . . . . . ...... .. . .. .. .. .. .. . . . .. . ... ........ . .. . .... . ... . . . . .................. ... .. . . ... .. ..... . . . ...... . ... ..... . . .
lowQualScore : 22 7 22 7 7 777 7 7 7 7 88888 000000000 7 77777 7 0 111111 7 1111 99 888 99 6666 2 99 1 0 9999 888 55 0000000 999 5555 55 000 00 0 0 0 0 2222222 4 0 0 55 0 11 4 4 333 4 11 333333 66 4 0 99 0 0 9999999 111111 4 7 111111111 4 111 4 4 33 7 8888888888888888888888 888888 7 22 7 7 6666 0 88888 000000000000000000 00 0 0 0 0 0 00000 8888888888888 0000000 0 0 88 555 555 0 0 5 0 222 0 00 0 88 8 000000 88888 0 0 0 00000000000 0 8 0000 8 0 0 0 0 8888 0000 777 7 2 5555555 3333333 00 00 0 8 00 0 0 22 7 777 7 222 7 3 3 7 7 7 777 7 7 22 22 7 7 777 00 888 0000000 0 11 7 7 8 22 777 7 7 0 7 7 777777777777777777 8 0 0 88 0 00 0 0 8 0 666 0 88888 8 0 00 8 0 88 8 8 8 4444 0 666 0 8 00 0 888 0 0 0 0 888 7 1 7 7 7 7 7 0000000 66 99 7 7 7 1111 666 7 7 7 99 7 99 7 000 7 7 7 7 7 7 444444 22 7 22 22 22 22 22 7 7 7 22 7 000 44444444 7 77 7 1111 7 000 7 7 7 7 111111111111111111 444 99 7 7 000 99 88888 3 7 7 888888 7 777 77777 7 7 7
consensus : CGAGGGTTGT--CCCA-GAA--AAACGCGAA-CATT-T---CATA-TAT-TTTT-TGTGA-AACTTCTAG--T--ATAT------C--TTTATTAT-TTGG--T--ACACAA-CAAAATGAT------CATT-TTCTGAAT----ATC--G---CTG--TG----AAATTT--TTAATG-CATTTTGT----CTG---TAAAT--AACATT-------TT--TATCACA----CTTT--A---A--CCAG-TC-T-TA-CAT-AT--TAATAG-CT-GCCG--GCGC-AAC--GCTG-A-CG-A-C-GT--C-A----AAA--CG-T-AA--CT-T-C-G--T--GAT-GT--CTGTTAAC-G----TCAT-ATTCATT--TCTTCTC-AAAATAC-CG-TCC----------ACA---------AACA--T---TTCTC-A--T-ATC-GCTTA--C-ATCC--A-TGCATT------------------AAAAA--CG-TT-T-CTGA-ACT-AAGAGATG---TCGG--AG---------ATTG-T-----G-AT-ACTT--CGC---GG---CGAATT-TC-AGCT-CAC-G-TGAAATCTCT-TTCC--TCA-CAA-ATGATT------TTTT----AA-TG-CGTAGGA-A---------AGA-ATG--C-AAANAT-CTAGTA-TGA-CG-TCC-AT-CACCCTC--AT---TTTTAA-GTTTT---T--CGT-CTCT--TTTTG--TCG--G-TTCT--ACCACGCGCCT-C-TTCC--ATAG-GATTA---C-CA--CTCC-A-ATC-ATCCT-T-AAACCTTT-TG-G-GTCATGTGTA-TACC-AATAGGT--C-CGAGACACATGTTTGTGT---CGTG-TCTA--TCGTT-------TNCATCTCTCTTTTT-GT-TT-GAACGGGGGT--CAAACCTC---G-C-TCCACANAGT-A-TTGAA-----TTA---C--A---ATTCGGTGC-GCC-GCATTA-TCA-TC--CGA-C-GTTGCCAT-TTTTTGAAAATTTCTAAC-GG-AA--GGTGTTTGTAC-GT--ATAACG-TCAT-AAAAATGTTATTT-AT-GA-CGTCAT-TTTATA-TAATTTTAT--ATTG-ACATGT--TT-GT-T-AG-ACCAT--AACGC-TTTTA-TTGATATA-A-TTATATTT-AAAAT-AT--AAC--GTTTG--T--ACA-A-TAAAATATA----GAGC-G-A-A-A-TTT--CAAC-CG--AAG-TGC---TCTTTT-CGAACG-TGCAAAAAA-A-TCG-GTGCGC-CG------ATTACTGATATTTTGCACC--TTTTAAA-TGCC--GTT--TTCA--TA--TTT--GT-TTG-TGACC-AAAAC--CTTAATA-TTTT---TT----G---TG-AAAATTACGATTATACCAT-C----CACT-A---ACA-ATAGG-C-AAAAT------------------TT--AGTA--AAG-TTT-GGTGAC---GT--AGTTT--A--TG-AAATATC-TAAA-AAG--T---T-CGC-G-TTTT-----TCT-G-GGAC-AACCCTCGTA
Reference ( family-1733 ) : CGAGGGTTGT--CCCA-GAA--AAACGCGAA-CATT-T---CATA-TAT-TTTT-TGTGA-AACTTCTAG--T--ATAT------C--TTTATTAT-TTGG--T--ACACAA-CAAAATGAT------CATT-TTCTGAAT----ATC--G---CTG--TG----AAATTT--TTAATG-CATTTTGT----CTG---TAAAT--AACATT-------TT--TATCACA----CTTT--A---A--CCAG-TC-T-TA-CAT-AT--TAATAG-CT-GCCG--GCGC-AAC--GCTG-A-CG-A-C-GT--C-A----AAA--CG-T-AA--CT-T-C-G--T--GAT-GT--CTGTTAAC-G----TCAT-ATTCATT--TCTTCTC-AAAATAC-CG-TCC----------ACA---------AACA--T---TTCTC-A--T-ATC-GCTTA--C-ATCC--A-TGCATT------------------AAAAA--CG-TT-T-CTGA-ACT-AAGAGATG---TCGG--AG---------ATTG-T-----G-AT-ACTT--CGC---GG---CGAATT-TC-AGCT-CAC-G-TGAAATCTCT-TTCC--TCA-CAA-ATGATT------TTTT----AA-TG-CGTAGGA-A---------AGA-ATG--C-AAANAT-CTAGTA-TGA-CG-TCC-AT-CACCCTC--AT---TTTTAA-GTTTT---T--CGT-CTCT--TTTTG--TCG--G-TTCT--ACCACGCGCCT-C-TTCC--ATAG-GATTA---C-CA--CTCC-A-ATC-ATCCT-T-AAACCTTT-TG-G-GTCATGTGTA-TACC-AATAGGT--C-CGAGACACATGTTTGTGT---CGTG-TCTA--TCGTT-------TNCATCTCTCTTTTT-GT-TT-GAACGGGGGT--CAAACCTC---G-C-TCCACANAGT-A-TTGAA-----TTA---C--A---ATTCGGTGC-GCC-GCATTA-TCA-TC--CGA-C-GTTGCCAT-TTTTTGAAAATTTCTAAC-GG-AA--GGTGTTTGTAC-GT--ATAACG-TCAT-AAAAATGTTATTT-AT-GA-CGTCAT-TTTATA-TAATTTTAT--ATTG-ACATGT--TT-GT-T-AG-ACCAT--AACGC-TTTTA-TTGATATA-A-TTATATTT-AAAAT-AT--AAC--GTTTG--T--ACA-A-TAAAATATA----GAGC-G-A-A-A-TTT--CAAC-CG--AAG-TGC---TCTTTT-CGAACG-TGCAAAAAA-A-TCG-GTGCGC-CG------ATTACTGATATTTTGCACC--TTTTAAA-TGCC--GTT--TTCA--TA--TTT--GT-TTG-TGACC-AAAAC--CTTAATA-TTTT---TT----G---TG-AAAATTACGATTATACCAT-C----CACT-A---ACA-ATAGG-C-AAAAT------------------TT--AGTA--AAG-TTT-GGTGAC---GT--AGTTT--A--TG-AAATATC-TAAA-AAG--T---T-CGC-G-TTTT-----TCT-G-GGAC-AACCCTCGTA
gi|1 : GAGGGTTGTGTCCCATGAA--CAACGCGAA-CGTT-TGCTCATAATATATTTC-GGTAATAGCTTCTAA--TTCATACACTCGAC--TATATTGC-TTGGGCT--ACACAGGCAAAATGATT-----CATT-T-CTGAAT-----TC--G---CTG--TG----AAATTT--TTAATGGCATTCTGT----CTG---TAA-T--AAATTT-------TT--TATCACA----CTTTCAA---A--CTAGGTC-T-TA-CAT-AA--TAATCGACT-ACCG---CGC-AAC--GTTG-A-CG-AGC-GTTTC-A----AAAGTCG-T-GAG-CTAT-C-GAAT--GAT-GT--CTGTTAAC-G----T-ATCATTCATT--CCTTCTCCAAAATATTCG-TCCTCACTATGTGACG---------AACACAT---TTATC-A--TGATCAGCTAAACCGAGCC--A--GCTTT------------------AATAA--CA-TT-T-CT-A-AGT-AAGAGATAAGTTTGGTAAG---------ATTGGT-----GGAT-ACTT--CGC---GGGCGCAAGTT-TC-AGTT-GAC-T-TGAAATCTCT-TTCC--TAAACAA-ATGATT------TTTTTGTTGA-TG-CGAGGGACA---------AGG-A------AAGCAT--------TGA-GG-TCCCATTCACCCAG--AT---TTTTAAAGTTTA---T--CGT-CT----TTTTG--TCACTG-TTCT--ACCAAGCACCT-C-CTCC--ATAGCGATTA---C-CA--CTCCCA-ACC-ATCCT-T-AA-CCTTTGTG-T-GCCA-GTGTA-TACCTAATAGGT--CGCGAGACACATGTTTGT-T---CATT-TCCAACTCGTA-------TTCATCTCTCTTTAA-GTATT-GAACAGCGAT--CAAACCTT---G-CATCC-CAGAGT-AATTGGAAAAGGTTGAGCT--A---ATTTCGTGC-GCCAGCATTA-T-A-TCGCCGATC-GTTGCCAT-TTT---AAAATTGTTAAC-GG-GAATGGTGTGTGTAC-GTTTATAACG-CCAT-AAAAATGTTATTT-AT-GA-CGTCAT-TATATA-TAATTT-ATTGATTGGACATATGGTT-GT-TGAG-ACCATCCAACGC-TTT-A-TTGATTTA-A-TTATATTA-AGAAT-AGCGAACATGTTTG--T--GAA-A-TAAAATGAA----GAGC-G-A-ATA-TTT--CAGC-CG--AAG-TGC---TCTTTTTCGAACGGTGAAAGAAAGA-TCG--TGCGT-CG------GTTACTG-TATTTTGCACC--TTTTAAA-TGCC--GTT--TTCA--TAATTTT--GT-TTG-TGATC-AAAAC--CTTAATG-ATTT---TT----G---TGTAAAATTACGATTATATCAT-C----ATGT-A---ACA--TAGG-C-AAA-T------------------AT--AGTA--ACG-TTT-GGTGAC---GT--AGTTT--A--TA-AAATATC-TAAA-AAG--T---T-CGA-----TT-----TCT-G-GGAC-AACCCTCGTA
gi|10 : CGAGGGTTGT--CCCA-GAA--AAACGCGAA-CATT-T---CATA-TAT-TTTT-TGTGA-AACTTCTAG--T--ATAT------C--TTTATTAT-TTGA--T--ACACAA-CAAAATGAT------CATT-TTCTGAAT----ATC--G---CTG--TA----AAA-TT--TTAATG-CATTTTGT----CTG---TAAAT--AACATT-------CT--TATCACA----TTTT--G---A--CCAG-TC-T-TA-CA------TAATAG-CT-GCCG--GCGC-AA
gi|11 : taAAT--AACATT-------TT---ATCACA----CTTT--A---AACCCAG-TC-T-TATCAT-AT--TGA--G-CC-TCCG--GCGC-AAC--GCAG-A-GG-A-C-GA--C-ATAATAAA--GGCT-AG--CT-T-CGG--T--GAT-GT--
gi|12 : agttttagatatccctgttgagaaccagcagtgatcatgtacacatgacatacgcgcttggtactgtactgcatcgTGT----CTG---TTAAT--AACATT-------TT--TATCACA----CTTC--A---A--CTAG-TC-T-TA-CAT-A-----ATAA-CT-ACCG--GCGC-AAC--GTTG-A-CG-A-C-GT--C-A----AAA--CG-G-AG--CT-T-C-G--T--GAT-GT--CTGTTAAC-G----TCAT-ATTCATT--CCTTCTC-AAAATAT-CG-TCCACTATGTG--ACA---------AACA--T---TTATC-A--T-ATC-GCT
gi|13 : --G---CTG--TG----AAAGTT--TTA-TG-CATTTAGT----CTG---TAAAT--AACATT-------TT--AAACACA----CTTT--A---A--CCAG-TC-T-TA-CAT-AT-----TAG-AT-GCCG--GCGC-AAC--GCTG-A-CG-A-C-GT--C-A----AAA--CG-
gi|14 : --ATAG-GATCG---CGCA---TCG-ATATC-ATCCT-T-AAACCTTT-TG-T-GTCATGTG-A-TACC-AAT--GT--C-CGAGACACATGTTTGTGT---C
gi|15 : -GT-TT-GAACAGGGAT--CAAACCTT---G-C-TCCACAGAGT-A-TTGAA-----TTA---C--A---AT
gi|2 : CGAGGTATAT--CCCA-GAAGAAAATGCGAAACAGTGT---CGCA-TAT-TATTATGTTT-AACTTTTAAGCC--ATAT------C--ATT-TTATGTTGG--T--ACACAA--AAAATGATTTTTATCATTGTTCT-AAT----ATCAAG---CTG--TG----AAATTT--TTAAGG-AGTTTTGTA---CTG---TAAAT--AACGTT-------TTATTATCACA----CTTC--A---AT-CCAG-TCGT-CA-CATTAT--AGAAAG-CTAGCCGCTGCAC-AAAAAGCTGCATCG-A---GT--CGA----AAA--CG-T-AAAATT-T-C-G--T--GAT-GG--CCGT-----G----CCA---------------CT-----ATGC-TG--------------ACA---------AACA--T---TTCTC-ACAT-ATC-GCTGA--C-ACCC--A-TGCATG------------------AAAAAAACA-CT-TACTGA-ACTCAAGAGATG-----GG--AGCGAGTAACGATTG-TCATATG-AT-ACTTGCCGCTGTGG---CAAATT-TCGAGCT-CATTG-TGAAATCTCT-TTCC--TCA-CAAGATGATT------TTTT----AAGCG-CGTAGGATA---------AGA-TTG--C-AAG--T-CTAGTA-T-A-CGGTTC-AT-CATCCGC--AT---TTTTAA-A----------CGT----T--TTTTG--TCG--GATTTT--ACCGCGCACCT-C-TTCC--A-AG-GATTATGTC-CAGTTTTC-A-ATCCATCCTAT-AAATCTTT-TGTG-AGCATGGTTA-TGCC-AGTAGGTGTC-CGAGACACATGTTTGTGT---CGTGATCT---TCGTT-------TCCATCTCTCTTTTA-GT-TTAGAACAGGGGT--CAAACCTTACGG-C-TCCACACAGTGA-TTGAA------TA---C--AGAGGGTCGGT-C-GCC-GCCTTA-TCA-TC--CGA-C-GTTTCCATGTTTTTGAAAATTTCTAAC-GGAAA--GGT-TTTGTACGGT--ATAACG-TCAT--AAAATG-TA-TT-ATAGA-CGTCATATTTATA-TAAGTGTAT--ACTG-ATGTGT--TG-GTGT-AT-GCCAT---ACAC-TTTTA-TCTATATAGA-TAGTATTT-AAAACGAT----C--GTTGGGATTAACA-ATTAAAATGT-----GATCAG-ACA-A-CTTTGCAAA-CAATAAA-CGCTTGTTCTTT-CAGACG-TGCAAAGAA-ATTCGAGTTGGC-CGACCGTAATTACTGATATTGTGCACT--TTTTAAAGTACCCGGGTAATTCACCTA--TTT--GTGTTG-TGACC-AAAGTCACTTAAGA-TTTTGTCTTGTTAG---TG-AAAATTGCG-TTAT--CAT-C----CATTAA---ACA-ATAGG-C-AAAAT------------------ATGAAGTA--AAGATTTGGGTGA----GTTGAGTGT--GATTG-ACATATC-TAGA-AAT--T---TGCGT-G-TTTT-----TCTGG-GGAC-ACCC
gi|3 : CGAGAGTTGT--CCCA-GAA--AAACACGAA-CATT-T---TATG-TAT-TTTT-TGTGA-AACTTCTAG--T---TAT------TCTTTTATTAT-TTGG--TGTACACAA-CAAAATG-T------CATT-ATCTGAAT----ATC--G---CTGGCTG----AAATTT--TTAATG-CATTTTGT----CTG---TAAAT--A-CATT-------TT---ATCACA----CTTT--A---AACCCAG-TC-T-TA-CAT-A-----A-AG-CT-GCCG--GCGC-AAC--GCTG-A-CG-A-C-GT--C-A----AAA--CG-T-AA--C---------------------------------------ATTCATT--TTTTCTC-AAA-TAC-CGCTCC----------AAATTGTGGAAAAACA--T---TTCTTTA--T-ATC-GCTT---C-ATCCCTACTGCATT------------------AAAAA--CGGTTGT-CTGATACT-AAGAGATG---TCGG--AA---------ATTG-T-----G-ATTACTT--CGC---GG---CGAATTCTC-AGCTTCAC-GGTAAAATCCCT-TTCC--TCA-CAA-ATTA---------TTT----AA-TATCGCAGGA-A---------AGA-ATGGCC-AAACAT-CTAGTATTGA-CG-TCC-AT-CACCCT---AT---TTTTAA-GTTTT---T--CGT-CTCT--TTTTG--TCA--G-TTCT--ACCACGCGCCT-C-TTTT--ATAG-G-TTA---C-CA--CTCC-A-TTCAATCCT-T-AAACCTTT-TG-G-GTCATGTGTA-TACC-AAATTGT--C-CGAGACACATGTTT-TGTGGACGTG-TCTA--TCGTT-------TACATCTTTCTTTTT-GT-TT-AATTGGGGGC--CAAACCTC---GCC-TCCAAACAGT-A-TTGAA------TA---CCAA---ATTCGGTGC-GCC-GCATCA--CATTC--CGA-CTGTTGCCAT-TTTTTGAAAATTTCTAACGGG-AA--GGTGTTTGTAC-GT--AAAACGTTCATAAAAAATCTTATTTAAT-GA-CGTCA--TTTATATTAATTTTAT--ATTG-ACATGT--TTGGT-T-AG-ACCAT--AACAC-TTTCATTTGATATA-A-TTATATTTAAAAAT-AT--AAT--GTTTGC-T--ACATA-TAAAAAATAATCGGAGC-C-A-A-ATTTT--CAAC-CG--AAGTTGC---TCTTTT-CGAAC--TGC-AAAAA-A-TCG-GTGCGC-CG------ATTACTGATATTTTGCGGCTTTTTTAAA-TGCC--GTT--TTCA--TA--TTTTGGT-TTGTTAACC-AAAAC--CTTGATA-TTTT---TT----GC--TG-AAAATTACGATTATACCATCC----CACT-A---ACA-ATAGG-CAAAAAT------------------TT--TGTA--AG---TT-GGTGAC---GT--AGTTT--A--TGAAAATATC-TAAATAAGTTT---T-CGC-GTTTTT-----TCT-GTGGACAAACCCTCGT
gi|4 : aCGAGGGTTGT--CCCA-GAA--AAACACGAA-CATT-T---TATA-TAT-TTTT-TGTGA-AACTTCTAG--T--ATAT------C--TTTAGTAT-TTGG--T--ACATAA-CAAAATGAT------CATA-TTCTGAAT----ATC--G---CTG--TG----AAATTT--T-AATG-CATTTTGT----CTG---TAAAT--AACATT-------TT--TATCACA----CTTT--A---A--CCAG-TC-T-TA-CAT-ATGATAATAG-CT-GCCG--GGGC-AAC--GCTG-A-CG-A-C-GT--C-A----AAA--CG-T-AA--CT-T-C-G--T--GAT-GT--CTGTTAAC-G----TCAT-ATTCATT--TTTTCTC-AAAATAC-CG-TCC----------A--------------A--T---TTCTT-A--T-ATC-GCTT---C-ATCC--A-TGCATT------------------AAAAA--CG-TT-T-CTGA-ACT-AAGAGATG---TCGG--AA---------ATTA-T-----G-AT-ACTT--CGC---GG---CGAATT-TC-AG-T-CAT-G-TAAAATCTCT-TTCC--TCC-CAA-ATGATT------TTT-----AA-TG-C--AGGA-A---------AGA-ATG--C-AAAAAT-CTAGTA-TGA-CG-TCC-AC-CACCTTCTTAT---TTTTAA-GTTTT---T--CGT-CTCT--TTTTG--TCA--G-T-CT--ACCACGCGCCT-C-TTTC--ATAG-GATTA---C-CA--CTCC-A-ATC-ATCCT-T-AAACCTTT-TG-G-GTCATCTGTA-TACC-AAT--GT--C-CGAGACACATGTTCGTGA---CGT--TCTA--TCGTT-------TACATCTCTCTTTTT-GT-TT-GAATTGGGGC--CAAACCTC---G-T-TCCAAACAGT-A-TTGAA-----TTA---C--A---ATTCGGTGC-GCC-GCATCA-TCA-TC--CGA-C-GTTGCC-T-TTTTTAAAAATTTCTAAC-GG-AA--AGTGTTTGTAC-GT--ATAAAG-TCAT-AAAAATGTTATTT-AT-GA-CGTCAT-TTTATA-TAATTTTAT--ATTG-ACATGT--TT-GT-T-AG-ACCAT--AACAC-TTTTA-TTGATATA-A-TTATATTT-AAAAT-AT--AAT--GTTTG--T--ACA-A-TAAAATATA----GAGC-A-A-A-A-TTT--CAAC-CG--AAG-TGC---TCTTTT-CGAACG-TGCAAAAAA-A-TCG-GTGCGC-CG------ATTACTGATATTTTGCACC--TTTTAAA-TGCC--GTT--TTCA--TA--TTT--GT-TTG-TAACC-AAAAC--CTTGATA-TTTT---TT----G---TG-AAAATTACGATTATACCAT-C----CACT-A---ACA-ATAGG-C-AAAAT------------------TT--AGTA--AAG-TTT-GGTGAC---GT--AGTTT--A--TG-AAATATC-TAAA-AAG--T---T-CGC-G-TTTT-----TCT-G-GGAC-AACCCTCGTA
gi|5 : AAACTTCTGTTCCCTTCA-CAA--TGATTGTGTTTTTTT----AA-TG-CGTAGCA-GCTATATAATAGATATG--CAAAAAATGCTAGTA-TGACCG-TTC--T-TATCTTC--ACAGGTTTTAA-GGTTA---TGCCGT-TTCT--
gi|5 : aT---TTTTAA-GTTTTGGTT--CGTTCTCTAATTTTGATTCG--G-TTCCTCACCACGCACCTACGTTCCGCATAA-GATTA---T-CT--CACC-ACACC-ATCCT-TGAAACTTTT-TA-GTGTCATGTGTAATACC-AATAG-T--C-CGAGACACATGTT-GTGT---CGT--TCTA--TGATTGCTTTTGTTCATCTTTCTTTTTAGT-TT-GAATAGAGATTTCAAAC-TC---G-C-TCCACAGCGT-A-T-GCA-----TTA---C--A---AT-CGTTGCTGCC-GCATTAGTCA-TC--TGAAC-GTTGCCAT-TTTT--GAAATTTCTAAC-AG-A---GGTGTT-GTAC-GT--ATA-CG-TCAT-AAAA-TGTTATTT-TA-GAGTATC-T-TTTATA-TAATTTTAT--ACTG-ACAAG---TT-GT-T-AGAACCCT--AACGCTTTTTA-TTGCTACG-ATTTATATTT-AAAAT-AT--AAT--GTTTG--T--AAA-A-T-AAATATA----GAGC-GCA-A-A-TTT--TAACGCG--AAG-TGC----CTTTT--GAACG-TGCAAAAAA-A-TCG-GTGCGTGCG------ATctgcctttttaagttttggttcgttctctaattttgattcggttcctcaccacgcacctacgttccgcataagattatctcaccacaccatccttgaaactttttagtgtcatgtgtaataccaatagtccgagacacatgttgtgtcgttctatgattgcttttgttcatctttctttttagtttgaatagagatttcaaactcgctccacagcgtatgcattacaatcgttgctgccgcattagtcatctgaacgttgccatttttgaaatttctaacagaggtgttgtacgtatacgtcataaaatgttattttagagtatcttttatataattttatactgacaagttgttagaaccctaacgctttttattgctacgatttatatttaaaatataatgtttgtaaaataaatatagagcgcaaattttaacgcgaagtgccttttgaacgtgcaaaaaaatcggtgcgtgcgatgggttctatctaatgaatagaattgctcctttgccaggcggaggaagtggcactattattaaaaaaaattgcctgttcattttttctcccccaatattcttcgtttggtcagacccgattaaccattacatgatttatttttttatttaaaaattacgattattatcgacatactatagacgtataggtcgaaatacaaggcgaatatcaactttggtacaaagtgtgtgactgcgtagttttaatgtaaaaatcgtaaaaagtggatcgccgttttttttttctgggacacccttatacagctaaaatat
gi|5 : aaaacttctgttcccttcacaatgattgtgtttttttaatgcgtagcagctatataatagatatgcaaaaaatgctagtatgaccgttcttatcttcacaggttttaaggttatgccgtttctctgccTA-TTTT---TT----TATTTA-AAAATTACGATTAT--TAT-CGACATACT-ATAGACGTATAGGTC-GAAATACAAGGCGAATATCAACTTT--GGTACAAAG-TGT-G-TGACTGCGT--AGTTTTAA--TGTAAAAATCGTAAA-AAG--TGGAT-CGCCG-TTTTTTTTTTCT-G-GGAC--ACCCTTATAgggttctatctaatgaatagaattgctcctttgccaggcggaggaagtggcactattattaaaaaaaattgcctgttcattttttctcccccaatattcttcgtttggtcagacccgattaaccattacatgatttatttttttatttaaaaattacgattattatcgacatactatagacgtataggtcgaaatacaaggcgaatatcaactttggtacaaagtgtgtgactgcgtagttttaatgtaaaaatcgtaaaaagtggatcgccgttttttttttctgggacacccttatacagctaaaatat
gi|6 : aaaacttctgttcccttcacaatgattgtgtttttttaatgcgtagcagctatataatagatatgcaaaaaatgctagtatgaccgttcttatcttcacaggttttaaggttatgccgtttctctgcctttttaagttttggttcgttctctaattttgattcggttcctcaccacgcacctacgttccgcataagattatctcaccacaccatccttgaaactttttagtgtcatgtgtaataccaatagtccgagacacatgttgtgtcgttctatgattgcttttgttcatctttctttttagtttgaatagagatttcaaactcgctccacagcgtatgcattacaatcgttgctgccgcattagtcatctgaacgttgccatttttgaaatttctaacagaggtgttgtacgtatacgtcataaaatgttattttagagtatcttttatataattttatactgacaagttgttagaaccctaacgctttttattgctacgatttatatttaaaatataatgtttgtaaaataaatatagagcgcaaattttaacgcgaagtgccttttgaacgtgcaaaaaaatcggtgcgtgcgatgggttctatctaatgaatagaattgctcctttgccaggcggaggaagtggcactattattaaaaaaaattgcctgttcattttttctcccccaatattcttcgtttggtcagacccgattaaccattacatgattCGAGGGTTGT--CCCA-GAA--AAACGCGAA-CATT-T---CATA-TAT-TTTT-TGTGA-AACTTCTAG--T--ATAT------C--ATTATTAT-TTGA--A--ACACAA-CAAAATGAT------CATT-TTCTGAATATCGATC--G---CTG--TG----AAA-TT--TTACTG-CATTTTGT----CTG---TAAAT-----ACT-------TT--TATCACA----CTTT--A---A--CCAG-TC-T-TA-C-T-------ATAG-CT-GCCG--GCGC-AAC--GCTG-A-CG---C-AT--C------AAA--CG-TAAA--CT-T-C-G--T--GA---T--TTGTTAACGG----TCAT-A-TCATCTGTTTTCTC-AAAATA--CG-TCC----------ATATGAG-----AAAA--TACATTC-C-A--T-ATC-GCTTAC-C-ATNN--N-NNNNNNNNNNNNNNNNNNNNNNAAAAAAA--CG-TT-T-CTGA-ACT-AAGAGATG---Tcagctaaaatat
gi|7 : ta-TTTTA-TTGATATA-A-TTATATTT-AAAAT-AT--TAT--GTTTG--T--ACA-A-TAAAATATA----GACC-A-A-A-A-TTT--CAAC-CG--AAG-TGC---TCTTTT-CGAACG-TGCAAAAAA-A-TCG-GTGTGC-CG------ATTACTGATATTTTGCACC--TTTTAAA-TGCC--GTT--TTCA--TA--TTT--GT-TTG-TAACC-AAAAC--CTTAATA-TTTT---TT----G---TG-AAAATTACTATTATACCAT-C----CACT-A---ACA-ATAGG-C-AAATT------------------TT--TGTA--AAG-TTT-GGTGAC---GT--AGTTT--A--TG-AAATATC-TAAA-AAG--T---T-CGC-G-TTTT-----TCA-G-GGAC-AACCCTCGTAg
gi|8 : -TTTTA-TTGATATA-G-TTATATTT-AAAAT-AC--AAC--GTTTG--T--GAA-A-TAAAATATA----GAGC-G-A-A-A-TTT--CAAC-CG--AAG-TGC---TCTTTT-CGAACG-TGCAAAAAA-A-TCG-GTGGGC-CG------ATTACTGATATTTTGCACC--TTTTAAA-TGCC--GTT--TTCA--TA--TTT--GT-TTG-TGACCAAAAAC--CTTAAGATTTTT---TT----G---TG-AAAATTACGATTATATCAT-C----CATT-A---ACA-ATCGT-C-AAAAT------------------TT--AGTA--AAG-TTT-GATGAC---GT--AGTT
gi|9 : AAAATG-----------T-ATCTGGAC----ATA--GTCCCTG--TGCCAAAAGTTTGTTCAATG---TCTTGTAGTCCTGAGTCAAATTTAACATTATCATTATT--TATCACAGTTTCTTT--ATATG--CCAT-TC-TCTT-CAC-AT---AATAG-CT-GC-G--GCGCTAAC--TCTG-A-CGGA-CTGC--C-A----AAAA-CG-T-AA--TT-TTC-A--TTCGATTGCTACTGTTAAC-GAAGTCCAT-ATTTATA--TCTTCTCTAAAAT
blockSeqs : . . GA A G . . . A . GCC TCT G TGT . A TTTTAT G ATCG AA TCC GC CCAA G GT . AGTC AGT TT ATCATTA ATT GTTT . TAT AC . G C T ATGATA T . A CT T AA C T GA T . ATAAT A C A AA . T ATTC TTGCTA T G AAGTCCAT T CTG T T C AAATTGTGGAAA TACA T CA . . TAC . CTACT NNNNNNNNNNNNNNNNAA AA G G A T C TC AGCGAGTAACG TCATAT . T GC TGT . C G C T TG G CT . GA GTGTTT T G T T GCTATATAAT T GCC C G T C G AT TCTT AGG . T TGGTT TCTCTAA AT . A TC A G GC . TGT G GTT . T C A G . TG A . AG GT . T GGA GA A GCTTTTG C TA . A A TT ACG C . G G . TACAGAG T . GT T . A T G TTG G AAA G . T AA ATA G ATA T . . T G G . A A T T G T A G AAT GA TA T T ATCG AG C . T TG G AT T TTG . . . T A G ACCGTA TT G CG AA CC . TG G T A CA T GTC GTTAG . AC C GACA A TAG T T A A ACAAGGCGAATATCAACT GAA CA A G TGC TG GAT A G T TGGA G GT TTTTT G T A
blockSeqs : . . . . . . . . . . T C . T . A . . . . . . . T . . A . . . T . . . AC . . . . TATAG T . . . . . . . A . . GA . . . . . . GGT TGT T . TCAT T T . C . ACTATGTGACA T . . . . GA . AT . . . . . . . TC AA T . . . . . . . C . GG . . . A . T . . C TA . CA A . . . . AT GC . . T ATGC CTCT . . . . . . . . . . C . C A . . . GT . . TT . . T . G A . A A . . A . . . . C . . TACCAA . . T . . . . . TTG . AA . . . A AAT . AT . . . T . . . . A . . . . . . AAT C . . . . GC . . . . . . . . . . . . . . . . . . . . . . . . . . . . TATT . AC . . . . . . . A . T . . . . . TAA T . . TTT . CG . . . .
blockSeqs : . . . . . . . . . . T C . T . A . . . . . . . T . . . . . . T . . . T . . . . ATTG T . . . . . . . A . . A . . . . . . GT TGT T . TCAT T T . C . ATATGAG T . . . . T . AT . . . . . . . . AA T . . . . . . . . . G . . . A . T . . T A . C A . . . . AC TC . . G TT CTCT . . . . . . . . . . C . . . . . . T . . AG . . T . . A . A T . . G . . . . C . . TTACA . . T . . . . . TTA . AA . . . A AT . A . . . T . . . . A . . . . . . AAT . . . . . C . . . . . . . . . . . . . . . . . . . . . . . . . . . . GC . AC . . . . . . . A . A . . . . . A . . . T . G . . . .
blockSeqs : . . . . . . . . . . T C . T . A . . . . . . . T . . . . . . A . . . . . . . . ATA A . . . . . . . A . . A . . . . . . GT TGG T . TCAT T T . C . ACA T . . . . T . NN . . . . . . . . . . . . . . . . A . C . . . . . T T . . T TT TTCT . . . . . . . . . . C . . . . . . G . . . . . C . . . . T T . . T . . . . C . . TTACA . . . . . . . . T . A . . . . TA . T . . . . . . . . . . . . . . . TAT . . . . . A . . . . . . . . . . . . . . . . . . . . . . . . . . . . G . AT . . . . . . . A . G . . . . . A . . . T . G . . . .
blockSeqs : . . . . . . . . . . T C . A . . . . . . . . . T . . . . . . T . . . . . . . . TA T . . . . . . . A . . A . . . . . . GT TGT . . CCA . A . . . A T . . . . . . . . T . . . . . . . . . . . G . . . . . . . . . A . . . . G . . TTACA . . . . . . AAC . . . . . A . . . . . . . . . . . . . . . . . . . . . . . . . . . . G . . . . . . . . . T . T . . . . . A . . . T . G . . . .
blockSeqs : . . . . . . . . . . . . . . . T . . . . . . . . AT T . . . . . . . A . . A . . . . . . GT T . . . . . . . . . . . . C . . . . . G . . . . . . . . . . . . . . . . . G . . . . . . . . . A . A . . . . .
blockSeqs : . . . . . . . . . . . T . . . . . . . . A T . . . . . . . A . . A . . . . . . . .
blockSeqs : . . . . . . . . . . . . . A . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . . . . . . .
blockSeqCons : ** *** T**** C******** T**** ****** ** ATA**** A** ** ** ** GT***** C* ATATGG**************** T***** TA** AT*** T**** A********** C*** AT** CTCT*** ** G* A** TTACA************* ** TTG AA*** ** AT* ** T** A** AAT**** ** G**
originalCons : CGAGGGTTGT--CCCA-GAA--AAACGCGAA-CATT-T---CATA-TAT-TTTT-TGTGA-AACTTCTAG--T--ATAT------C--TTTATTAT-TTGG--T--ACACAA-CAAAATGAT------CATT-TTCTGAAT----ATC--G---CTG--TG----AAATTT--TTAATG-CATTTTGT----CTG---TAAAT--AACATT-------TT--TATCACA----CTTT--A---A--CCAG-TC-T-TA-CAT-AT--TAATAG-CT-GCCG--GCGC-AAC--GCTG-A-CG-A-C-GT--C-A----AAA--CG-T-AA--CT-T-C-G--T--GAT-GT--CTGTTAAC-G----TCAT-ATTCATT--TCTTCTC-AAAATAC-CG-TCC----------ACA---------AACA--T---TTCTC-A--T-ATC-GCTTA--C-ATCC--A-TGCATT------------------AAAAA--CG-TT-T-CTGA-ACT-AAGAGATG---TCGG--AG---------ATTG-T-----G-AT-ACTT--CGC---GG---CGAATT-TC-AGCT-CAC-G-TGAAATCTCT-TTCC--TCA-CAA-ATGATT------TTTT----AA-TG-CGTAGGA-A---------AGA-ATG--C-AAANAT-CTAGTA-TGA-CG-TCC-AT-CACCCTC--AT---TTTTAA-GTTTT---T--CGT-CTCT--TTTTG--TCG--G-TTCT--ACCACGCGCCT-C-TTCC--ATAG-GATTA---C-CA--CTCC-A-ATC-ATCCT-T-AAACCTTT-TG-G-GTCATGTGTA-TACC-AATAGGT--C-CGAGACACATGTTTGTGT---CGTG-TCTA--TCGTT-------TNCATCTCTCTTTTT-GT-TT-GAACGGGGGT--CAAACCTC---G-C-TCCACANAGT-A-TTGAA-----TTA---C--A---ATTCGGTGC-GCC-GCATTA-TCA-TC--CGA-C-GTTGCCAT-TTTTTGAAAATTTCTAAC-GG-AA--GGTGTTTGTAC-GT--ATAACG-TCAT-AAAAATGTTATTT-AT-GA-CGTCAT-TTTATA-TAATTTTAT--ATTG-ACATGT--TT-GT-T-AG-ACCAT--AACGC-TTTTA-TTGATATA-A-TTATATTT-AAAAT-AT--AAC--GTTTG--T--ACA-A-TAAAATATA----GAGC-G-A-A-A-TTT--CAAC-CG--AAG-TGC---TCTTTT-CGAACG-TGCAAAAAA-A-TCG-GTGCGC-CG------ATTACTGATATTTTGCACC--TTTTAAA-TGCC--GTT--TTCA--TA--TTT--GT-TTG-TGACC-AAAAC--CTTAATA-TTTT---TT----G---TG-AAAATTACGATTATACCAT-C----CACT-A---ACA-ATAGG-C-AAAAT------------------TT--AGTA--AAG-TTT-GGTGAC---GT--AGTTT--A--TG-AAATATC-TAAA-AAG--T---T-CGC-G-TTTT-----TCT-G-GGAC-AACCCTCGTA
finalCons : CGAGGGTTGT--CCCA-GAA--AAACGCGAA-CATT-T---CATA-TAT-TTTT-TGTGA-AACTTCTAGT----ATATC--------TTTATTAT-TTGGT----ACACAA-CAAAATGAT------CATT-TTCTGAAT----ATC--G---CTG--TG----AAATTT--TTAATG-CATTTTGT----CTG---TAAAT--AACATT-------TT--TATCACA----CTTT--A---A--CCAG-TC-T-TA-CATATA----ATAG-CT-GCCG--GCGC-AAC--GCTG-A-CGA--C-GT--C-A----AAA--CG-T-AA--CT-T-CGT-----GAT-GT--CTGTTAAC-G----TCAT-ATTCATT--TCTTCTC-AAAATAC-CG-TCCATATGG----------------AACAT-----TTCTC-A--T-ATC-GCTTA--C-ATCCAT---GCATT------------------AAAAA--CG-TT-T-CTGA-ACT-AAGAGATG---TCGG--AG---------ATTG-T-----G-AT-ACTT--CGC---GG---CGAATT-TC-AGCT-CAC-G-TGAAATCTCT-TTCC--TCA-CAA-ATGATT------TTTT----AA-TG-CGTAGGAA----------AGA-ATGC---AAANAT-CTAGTA-TGA-CG-TCCAT--CACCCTC--AT---TTTTAA-GTTTT---T--CGTCTCT---TTTTG--TCG--G-TTCT--ACCACGCGCCT-C-TTCC--ATAG-GATTA---C-CA--CTCC-A-ATC-ATCCT-T-AAACCTTT-TG-G-GTCATGTGTA-TACC-AATAGGT--C-CGAGACACATGTTTGTGT---CGTG-TCTA--TCGTT-------TNCATCTCTCTTTTT-GT-TT-GAACGGGGGT--CAAACCTC---G-C-TCCACANAGT-A-TTGAATTACA-------------ATTCGGTGC-GCC-GCATTA-TCA-TC--CGA-C-GTTGCCAT-TTTTTGAAAATTTCTAAC-GGAA---GGTGTTTGTAC-GT--ATAACG-TCAT-AAAAATGTTATTT-AT-GA-CGTCAT-TTTATA-TAATTTTAT--ATTG-ACATGT--TT-GT-T-AG-ACCATA--ACGC-TTTTA-TTGATATA-A-TTATATTT-AAAAT-ATAAT----GTTTG--T--ACA-A-TAAAATATA----GAGC-G-A-A-A-TTT--CAAC-CG--AAG-TGC---TCTTTT-CGAACG-TGCAAAAAA-A-TCG-GTGCGC-CG------ATTACTGATATTTTGCACC--TTTTAAA-TGCC--GTT--TTCA--TA--TTT--GT-TTG-TGACC-AAAAC--CTTAATA-TTTT---TT----G---TG-AAAATTACGATTATACCAT-C----CACT-A---ACA-ATAGG-C-AAAAT------------------TT--AGTA--AAG-TTT-GGTGAC---GT--AGTTT--A--TG-AAATATC-TAAA-AAG--T---T-CGCG--TTTT-----TCT-G-GGAC-AACCCTCGTA
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|16 ): ATTGAAATAGTACTAATGAAAACTAAAGTGAAGTA
Alignments
lowQualScore : 111 11111 222222222 11111 222222 1111 1111 1111 1111111 11 2222222 111111 11 111111111 1 11 6666666666666666666666666666666 3333 11111 555555555555555555 11 11111 4444444444444 2222222 1 1 11 111 111 1 1 1 111 11 222222 11111 44444444444 11 111 1111 1111 111 1111111 11 11 11 111 111 1 1 111 11 111 22 111 2222222 111 222222222222222222 11 1 11111 11 11 111 111 11111 11 1111 111 111111 111 22222222 1111 111 444444444444444444 111 11111 1 111111 111 11111
lowQualScore : 99 6 99 6 6 111 6 6 6 6 11111 111111111 6 33333 6 5 222222 5 2222 66 888 66 0000 6 66 0 5 3333 777 55 3333333 888 8888 55 777 55 4 4 4 4 0 4 6666666 4 4 4 55 4 66 4 4 4 4 4 66 444444 66 4 5 66 5 7777777 777777 1 5 333333333 1 888 0 1 00 6 3333333333333333333333333333333 6 99 6 6 0000 8 44444 999999999999999999 11 8 8 8 8 8 55555 2222222222222 6666666 0 0 33 777 777 0 0 6 0 666 8 11 8 88 0 333333 77777 8 8 4 22222222222 8 0 11 222 8 8 8 8 0000 7777 111 6 3 9999999 9999999 11 11 8 0 11 8 8 99 6 111 6 000 6 3 3 6 6 6 111 6 6 44 99 6 1 111 33 111 6666666 1 88 6 6 4 99 111 6 6 1 6 6 444444444444444444 0 8 8 88 8 11 6 8 0 8 999 8 33333 0 8 11 0 8 88 0 0 0 8888 8 999 8 0 11 8 111 8 8 8 8 111 5 0 5 5 5 5 5 77777 33 77 0 5 5 2222 999 5 5 5 77 5 77 5 000 5 5 5 5 5 5 666666 99 6 99 99 99 99 99 6 6 6 99 5 000 11111111 5 66 5 2222 5 000 5 5 5 1 222222222222222222 888 77 5 5 000 77 11111 3 6 6 111111 6 111 66666 6 6 6
lowQualScore : .. . .. . . ... . . . . ..... ......... . ..... . . ...... . .... .. ... .. .... . .. . . .... ... .. ....... ... .... .. ... .. . . . . . . ....... . . . .. . .. . . . . . .. ...... .. . . .. . ....... ...... . . ......... . ... . . .. . ............................... . .. . . .... . ..... .................. .. . . . . . ..... ............. ....... . . .. ... ... . . . . ... . .. . .. . ...... ..... . . . ........... . . .. ... . . . . .... .... ... . . ....... ....... .. .. . . .. . . .. . ... . ... . . . . . . ... . . .. .. . . ... .. ... ....... . .. . . . .. ... . . . . . .................. . . . .. . .. . . . . ... . ..... . . .. . . .. . . . .... . ... . . .. . ... . . . . ... . . . . . . . ..... .. .. . . . .... ... . . . .. . .. . ... . . . . . . ...... .. . .. .. .. .. .. . . . .. . ... ........ . .. . .... . ... . . . . .................. ... .. . . ... .. ..... . . . ...... . ... ..... . . .
lowQualScore : 22 7 22 7 7 777 7 7 7 7 88888 000000000 7 77777 7 0 111111 7 1111 99 888 99 6666 2 99 1 0 9999 888 55 0000000 999 5555 55 000 00 0 0 0 0 8 0 2222222 0 0 0 55 0 11 4 4 4 4 4 11 888888 11 4 0 99 0 9999999 111111 4 7 111111111 4 111 4 4 33 7 0000000000000000000000000000000 7 22 7 7 6666 0 88888 000000000000000000 00 0 0 0 0 0 00000 8888888888888 0000000 0 0 88 555 555 0 0 5 0 222 0 00 0 88 8 000000 88888 0 0 0 00000000000 0 8 00 666 0 0 0 0 8888 0000 777 7 2 5555555 3333333 00 00 0 8 00 0 0 22 7 777 7 222 7 3 3 7 7 7 777 7 7 22 22 7 7 777 00 888 0000000 0 11 7 7 8 22 777 7 7 0 7 7 777777777777777777 8 0 0 88 0 00 0 0 8 0 666 0 88888 8 0 00 8 0 88 8 8 8 4444 0 666 0 8 00 0 888 0 0 0 0 888 7 1 7 7 7 7 7 44444 66 99 7 7 7 1111 666 7 7 7 99 7 99 7 000 7 7 7 7 7 7 444444 22 7 22 22 22 22 22 7 7 7 22 7 000 44444444 7 77 7 1111 7 000 7 7 7 7 111111111111111111 444 99 7 7 000 99 88888 3 7 7 888888 7 777 77777 7 7 7
consensus : CGAGGGTTGT--CCCA-GAA--AAACGCGAA-CATT-T---CATA-TAT-TTTT-TGTGA-AACTTCTAG--T--ATAT------C--TTTATTAT-TTGG--T--ACACAA-CAAAATGAT------CATT-TTCTGAAT----ATC--G---CTG--TG----AAATTT--TTAATG-CATTTTGT----CTG---TAAAT--AACATT-------TT--TATCACA----CTTT--A---A--CCAG-TC-T-TA-CAT-A-T---A-AT-AG-CT-GCCG--GCGC-AAC--GCTG-A-C-GA-C-GT--C-A----AAA--CG-T-AA--CT-TC-G--T--GA-TGT--CTGTTAAC-G----TCAT-ATTCATT--TCTTCTC-AAAATAC-CG-TCC-----A---TATG----GAA---CA--T---TTCTC-A--T-ATC-GCTTA--C-ATCC--A-TGCATT------------------AAAAA--CG-TT-T-CTGA-ACT-AAGAGATG---TCGG--AG---------ATTG-T-----G-AT-ACTT--CGC---GG---CGAATT-TC-AGCT-CAC-G-TGAAATCTCT-TTCC--TCA-CAA-ATGATT------TTTT----AA-TG-CGTAGGA-A---------AGA-ATG--CAAANA-T-CTAGTA-TGA-CG-TCC-AT-CACCCTC--AT---TTTTAA-GTTTT---T--CGT-CTCT--TTTTG--TCG--G-TTCT--ACCACGCGCCT-C-TTCC--ATAG-GATTA---C-CA--CTCC-A-ATC-ATCCT-T-AAACCTTT-TG-G-GTCATGTGTA-TACC-AATAGGT--C-CGAGACACATGTTTGTGT---CGTG-TCTA--TCGTT-------TNCATCTCTCTTTTT-GT-TT-GAACGGGGGT--CAAACCTC---G-C-TCCACANAGT-A-TTGAA-----TTA---C--A---ATTCGGTGC-GCC-GCATTA-TCA-TC--CGA-C-GTTGCCAT-TTTTTGAAAATTTCTAAC-GG-AA--GGTGTTTGTAC-GT--ATAACG-TCAT-AAAAATGTTATTT-AT-GA-CGTCAT-TTTATA-TAATTTTAT--ATTG-ACATGT--TT-GT-T-AG-ACCAT--AACGC-TTTTA-TTGATATA-A-TTATATTT-AAAAT-AT---A-ACGTTTG--T--ACA-A-TAAAATATA----GAGC-G-A-A-A-TTT--CAAC-CG--AAG-TGC---TCTTTT-CGAACG-TGCAAAAAA-A-TCG-GTGCGC-CG------ATTACTGATATTTTGCACC--TTTTAAA-TGCC--GTT--TTCA--TA--TTT--GT-TTG-TGACC-AAAAC--CTTAATA-TTTT---TT----G---TG-AAAATTACGATTATACCAT-C----CACT-A---ACA-ATAGG-C-AAAAT------------------TT--AGTA--AAG-TTT-GGTGAC---GT--AGTTT--A--TG-AAATATC-TAAA-AAG--T---T-CGC-G-TTTT-----TCT-G-GGAC-AACCCTCGTA
Reference ( family-1733 ) : CGAGGGTTGT--CCCA-GAA--AAACGCGAA-CATT-T---CATA-TAT-TTTT-TGTGA-AACTTCTAG--T--ATAT------C--TTTATTAT-TTGG--T--ACACAA-CAAAATGAT------CATT-TTCTGAAT----ATC--G---CTG--TG----AAATTT--TTAATG-CATTTTGT----CTG---TAAAT--AACATT-------TT--TATCACA----CTTT--A---A--CCAG-TC-T-TA-CAT-A-T---A-AT-AG-CT-GCCG--GCGC-AAC--GCTG-A-C-GA-C-GT--C-A----AAA--CG-T-AA--CT-TC-G--T--GA-TGT--CTGTTAAC-G----TCAT-ATTCATT--TCTTCTC-AAAATAC-CG-TCC-----A---TATG----GAA---CA--T---TTCTC-A--T-ATC-GCTTA--C-ATCC--A-TGCATT------------------AAAAA--CG-TT-T-CTGA-ACT-AAGAGATG---TCGG--AG---------ATTG-T-----G-AT-ACTT--CGC---GG---CGAATT-TC-AGCT-CAC-G-TGAAATCTCT-TTCC--TCA-CAA-ATGATT------TTTT----AA-TG-CGTAGGA-A---------AGA-ATG--CAAANA-T-CTAGTA-TGA-CG-TCC-AT-CACCCTC--AT---TTTTAA-GTTTT---T--CGT-CTCT--TTTTG--TCG--G-TTCT--ACCACGCGCCT-C-TTCC--ATAG-GATTA---C-CA--CTCC-A-ATC-ATCCT-T-AAACCTTT-TG-G-GTCATGTGTA-TACC-AATAGGT--C-CGAGACACATGTTTGTGT---CGTG-TCTA--TCGTT-------TNCATCTCTCTTTTT-GT-TT-GAACGGGGGT--CAAACCTC---G-C-TCCACANAGT-A-TTGAA-----TTA---C--A---ATTCGGTGC-GCC-GCATTA-TCA-TC--CGA-C-GTTGCCAT-TTTTTGAAAATTTCTAAC-GG-AA--GGTGTTTGTAC-GT--ATAACG-TCAT-AAAAATGTTATTT-AT-GA-CGTCAT-TTTATA-TAATTTTAT--ATTG-ACATGT--TT-GT-T-AG-ACCAT--AACGC-TTTTA-TTGATATA-A-TTATATTT-AAAAT-AT---A-ATGTTTG--T--ACA-A-TAAAATATA----GAGC-G-A-A-A-TTT--CAAC-CG--AAG-TGC---TCTTTT-CGAACG-TGCAAAAAA-A-TCG-GTGCGC-CG------ATTACTGATATTTTGCACC--TTTTAAA-TGCC--GTT--TTCA--TA--TTT--GT-TTG-TGACC-AAAAC--CTTAATA-TTTT---TT----G---TG-AAAATTACGATTATACCAT-C----CACT-A---ACA-ATAGG-C-AAAAT------------------TT--AGTA--AAG-TTT-GGTGAC---GT--AGTTT--A--TG-AAATATC-TAAA-AAG--T---T-CGC-G-TTTT-----TCT-G-GGAC-AACCCTCGTA
gi|1 : GAGGGTTGTGTCCCATGAA--CAACGCGAA-CGTT-TGCTCATAATATATTTC-GGTAATAGCTTCTAA--TTCATACACTCGAC--TATATTGC-TTGGGCT--ACACAGGCAAAATGATT-----CATT-T-CTGAAT-----TC--G---CTG--TG----AAATTT--TTAATGGCATTCTGT----CTG---TAA-T--AAATTT-------TT--TATCACA----CTTTCAA---A--CTAGGTC-T-TA-CAT-AAT---A-AT-CGACT-ACCG---CGC-AAC--GTTG-A-C-GAGC-GTTTC-A----AAAGTCG-T-GAG-CTATC-GAAT--GA-TGT--CTGTTAAC-G----T-ATCATTCATT--CCTTCTCCAAAATATTCG-TCCTCACTA---TGTGAC--GAA---CACAT---TTATC-A--TGATCAGCTAAACCGAGCC--A--GCTTT------------------AATAA--CA-TT-T-CT-A-AGT-AAGAGATAAGTTTGGTAAG---------ATTGGT-----GGAT-ACTT--CGC---GGGCGCAAGTT-TC-AGTT-GAC-T-TGAAATCTCT-TTCC--TAAACAA-ATGATT------TTTTTGTTGA-TG-CGAGGGACA---------AGG-A-----AAGCA-T--------TGA-GG-TCCCATTCACCCAG--AT---TTTTAAAGTTTA---T--CGT-CT----TTTTG--TCACTG-TTCT--ACCAAGCACCT-C-CTCC--ATAGCGATTA---C-CA--CTCCCA-ACC-ATCCT-T-AA-CCTTTGTG-T-GCCA-GTGTA-TACCTAATAGGT--CGCGAGACACATGTTTGT-T---CATT-TCCAACTCGTA-------TTCATCTCTCTTTAA-GTATT-GAACAGCGAT--CAAACCTT---G-CATCC-CAGAGT-AATTGGAAAAGGTTGAGCT--A---ATTTCGTGC-GCCAGCATTA-T-A-TCGCCGATC-GTTGCCAT-TTT---AAAATTGTTAAC-GG-GAATGGTGTGTGTAC-GTTTATAACG-CCAT-AAAAATGTTATTT-AT-GA-CGTCAT-TATATA-TAATTT-ATTGATTGGACATATGGTT-GT-TGAG-ACCATCCAACGC-TTT-A-TTGATTTA-A-TTATATTA-AGAAT-AGCGAACATGTTTG--T--GAA-A-TAAAATGAA----GAGC-G-A-ATA-TTT--CAGC-CG--AAG-TGC---TCTTTTTCGAACGGTGAAAGAAAGA-TCG--TGCGT-CG------GTTACTG-TATTTTGCACC--TTTTAAA-TGCC--GTT--TTCA--TAATTTT--GT-TTG-TGATC-AAAAC--CTTAATG-ATTT---TT----G---TGTAAAATTACGATTATATCAT-C----ATGT-A---ACA--TAGG-C-AAA-T------------------AT--AGTA--ACG-TTT-GGTGAC---GT--AGTTT--A--TA-AAATATC-TAAA-AAG--T---T-CGA-----TT-----TCT-G-GGAC-AACCCTCGTA
gi|10 : CGAGGGTTGT--CCCA-GAA--AAACGCGAA-CATT-T---CATA-TAT-TTTT-TGTGA-AACTTCTAG--T--ATAT------C--TTTATTAT-TTGA--T--ACACAA-CAAAATGAT------CATT-TTCTGAAT----ATC--G---CTG--TA----AAA-TT--TTAATG-CATTTTGT----CTG---TAAAT--AACATT-------CT--TATCACA----TTTT--G---A--CCAG-TC-T-TA-C---A-T---A-AT-AG-CT-GCCG--GCGC-AA
gi|11 : taAAT--AACATT-------TT---ATCACA----CTTT--A---AACCCAG-TC-T-TATCAT-A-T------TGAG-CC-TCCG--GCGC-AAC--GCAG-A-G-GA-C-GA--C-ATAATAAA--GGCT-AG--CT-TCGG--T--GA-TGT--
gi|12 : agttttagatatccctgttgagaaccagcagtgatcatgtacacatgacatacgcgcttggtactgtactgcatcgTGT----CTG---TTAAT--AACATT-------TT--TATCACA----CTTC--A---A--CTAG-TC-T-TA-CAT-A-------AT-AA-CT-ACCG--GCGC-AAC--GTTG-A-C-GA-C-GT--C-A----AAA--CG-G-AG--CT-TC-G--T--GA-TGT--CTGTTAAC-G----TCAT-ATTCATT--CCTTCTC-AAAATAT-CG-TCC-----AC--TATGTGACAAA---CA--T---TTATC-A--T-ATC-GCT
gi|13 : --G---CTG--TG----AAAGTT--TTA-TG-CATTTAGT----CTG---TAAAT--AACATT-------TT--AAACACA----CTTT--A---A--CCAG-TC-T-TA-CAT-A-T------T-AG-AT-GCCG--GCGC-AAC--GCTG-A-C-GA-C-GT--C-A----AAA--CG-
gi|14 : --ATAG-GATCG---CGCA---TCG-ATATC-ATCCT-T-AAACCTTT-TG-T-GTCATGTG-A-TACC-AAT--GT--C-CGAGACACATGTTTGTGT---C
gi|15 : -GT-TT-GAACAGGGAT--CAAACCTT---G-C-TCCACAGAGT-A-TTGAA-----TTA---C--A---AT
gi|2 : CGAGGTATAT--CCCA-GAAGAAAATGCGAAACAGTGT---CGCA-TAT-TATTATGTTT-AACTTTTAAGCC--ATAT------C--ATT-TTATGTTGG--T--ACACAA--AAAATGATTTTTATCATTGTTCT-AAT----ATCAAG---CTG--TG----AAATTT--TTAAGG-AGTTTTGTA---CTG---TAAAT--AACGTT-------TTATTATCACA----CTTC--A---AT-CCAG-TCGT-CA-CATTA-T---AGAA-AG-CTAGCCGCTGCAC-AAAAAGCTGCATC-GA---GT--CGA----AAA--CG-T-AAAATT-TC-G--T--GA-TGG--CCGT-----G----CCA---------------CT-----ATGC-TG---------A---CA-------AA---CA--T---TTCTC-ACAT-ATC-GCTGA--C-ACCC--A-TGCATG------------------AAAAAAACA-CT-TACTGA-ACTCAAGAGATG-----GG--AGCGAGTAACGATTG-TCATATG-AT-ACTTGCCGCTGTGG---CAAATT-TCGAGCT-CATTG-TGAAATCTCT-TTCC--TCA-CAAGATGATT------TTTT----AAGCG-CGTAGGATA---------AGA-TTG--CAAG---T-CTAGTA-T-A-CGGTTC-AT-CATCCGC--AT---TTTTAA-A----------CGT----T--TTTTG--TCG--GATTTT--ACCGCGCACCT-C-TTCC--A-AG-GATTATGTC-CAGTTTTC-A-ATCCATCCTAT-AAATCTTT-TGTG-AGCATGGTTA-TGCC-AGTAGGTGTC-CGAGACACATGTTTGTGT---CGTGATCT---TCGTT-------TCCATCTCTCTTTTA-GT-TTAGAACAGGGGT--CAAACCTTACGG-C-TCCACACAGTGA-TTGAA------TA---C--AGAGGGTCGGT-C-GCC-GCCTTA-TCA-TC--CGA-C-GTTTCCATGTTTTTGAAAATTTCTAAC-GGAAA--GGT-TTTGTACGGT--ATAACG-TCAT--AAAATG-TA-TT-ATAGA-CGTCATATTTATA-TAAGTGTAT--ACTG-ATGTGT--TG-GTGT-AT-GCCAT---ACAC-TTTTA-TCTATATAGA-TAGTATTT-AAAACGAT------CGTTGGGATTAACA-ATTAAAATGT-----GATCAG-ACA-A-CTTTGCAAA-CAATAAA-CGCTTGTTCTTT-CAGACG-TGCAAAGAA-ATTCGAGTTGGC-CGACCGTAATTACTGATATTGTGCACT--TTTTAAAGTACCCGGGTAATTCACCTA--TTT--GTGTTG-TGACC-AAAGTCACTTAAGA-TTTTGTCTTGTTAG---TG-AAAATTGCG-TTAT--CAT-C----CATTAA---ACA-ATAGG-C-AAAAT------------------ATGAAGTA--AAGATTTGGGTGA----GTTGAGTGT--GATTG-ACATATC-TAGA-AAT--T---TGCGT-G-TTTT-----TCTGG-GGAC-ACCC
gi|3 : CGAGAGTTGT--CCCA-GAA--AAACACGAA-CATT-T---TATG-TAT-TTTT-TGTGA-AACTTCTAG--T---TAT------TCTTTTATTAT-TTGG--TGTACACAA-CAAAATG-T------CATT-ATCTGAAT----ATC--G---CTGGCTG----AAATTT--TTAATG-CATTTTGT----CTG---TAAAT--A-CATT-------TT---ATCACA----CTTT--A---AACCCAG-TC-T-TA-CAT-A-------A--AG-CT-GCCG--GCGC-AAC--GCTG-A-C-GA-C-GT--C-A----AAA--CG-T-AA--C--------------------------------------ATTCATT--TTTTCTC-AAA-TAC-CGCTCC-----AAATTGTG----GAAAAACA--T---TTCTTTA--T-ATC-GCTT---C-ATCCCTACTGCATT------------------AAAAA--CGGTTGT-CTGATACT-AAGAGATG---TCGG--AA---------ATTG-T-----G-ATTACTT--CGC---GG---CGAATTCTC-AGCTTCAC-GGTAAAATCCCT-TTCC--TCA-CAA-ATTA---------TTT----AA-TATCGCAGGA-A---------AGA-ATGGCCAAACA-T-CTAGTATTGA-CG-TCC-AT-CACCCT---AT---TTTTAA-GTTTT---T--CGT-CTCT--TTTTG--TCA--G-TTCT--ACCACGCGCCT-C-TTTT--ATAG-G-TTA---C-CA--CTCC-A-TTCAATCCT-T-AAACCTTT-TG-G-GTCATGTGTA-TACC-AAATTGT--C-CGAGACACATGTTT-TGTGGACGTG-TCTA--TCGTT-------TACATCTTTCTTTTT-GT-TT-AATTGGGGGC--CAAACCTC---GCC-TCCAAACAGT-A-TTGAA------TA---CCAA---ATTCGGTGC-GCC-GCATCA--CATTC--CGA-CTGTTGCCAT-TTTTTGAAAATTTCTAACGGG-AA--GGTGTTTGTAC-GT--AAAACGTTCATAAAAAATCTTATTTAAT-GA-CGTCA--TTTATATTAATTTTAT--ATTG-ACATGT--TTGGT-T-AG-ACCAT--AACAC-TTTCATTTGATATA-A-TTATATTTAAAAAT-AT---A-ATGTTTGC-T--ACATA-TAAAAAATAATCGGAGC-C-A-A-ATTTT--CAAC-CG--AAGTTGC---TCTTTT-CGAAC--TGC-AAAAA-A-TCG-GTGCGC-CG------ATTACTGATATTTTGCGGCTTTTTTAAA-TGCC--GTT--TTCA--TA--TTTTGGT-TTGTTAACC-AAAAC--CTTGATA-TTTT---TT----GC--TG-AAAATTACGATTATACCATCC----CACT-A---ACA-ATAGG-CAAAAAT------------------TT--TGTA--AG---TT-GGTGAC---GT--AGTTT--A--TGAAAATATC-TAAATAAGTTT---T-CGC-GTTTTT-----TCT-GTGGACAAACCCTCGT
gi|4 : aCGAGGGTTGT--CCCA-GAA--AAACACGAA-CATT-T---TATA-TAT-TTTT-TGTGA-AACTTCTAG--T--ATAT------C--TTTAGTAT-TTGG--T--ACATAA-CAAAATGAT------CATA-TTCTGAAT----ATC--G---CTG--TG----AAATTT--T-AATG-CATTTTGT----CTG---TAAAT--AACATT-------TT--TATCACA----CTTT--A---A--CCAG-TC-T-TA-CAT-A-TGATA-AT-AG-CT-GCCG--GGGC-AAC--GCTG-A-C-GA-C-GT--C-A----AAA--CG-T-AA--CT-TC-G--T--GA-TGT--CTGTTAAC-G----TCAT-ATTCATT--TTTTCTC-AAAATAC-CG-TCC-----A------------------A--T---TTCTT-A--T-ATC-GCTT---C-ATCC--A-TGCATT------------------AAAAA--CG-TT-T-CTGA-ACT-AAGAGATG---TCGG--AA---------ATTA-T-----G-AT-ACTT--CGC---GG---CGAATT-TC-AG-T-CAT-G-TAAAATCTCT-TTCC--TCC-CAA-ATGATT------TTT-----AA-TG-C--AGGA-A---------AGA-ATG--CAAAAA-T-CTAGTA-TGA-CG-TCC-AC-CACCTTCTTAT---TTTTAA-GTTTT---T--CGT-CTCT--TTTTG--TCA--G-T-CT--ACCACGCGCCT-C-TTTC--ATAG-GATTA---C-CA--CTCC-A-ATC-ATCCT-T-AAACCTTT-TG-G-GTCATCTGTA-TACC-AAT--GT--C-CGAGACACATGTTCGTGA---CGT--TCTA--TCGTT-------TACATCTCTCTTTTT-GT-TT-GAATTGGGGC--CAAACCTC---G-T-TCCAAACAGT-A-TTGAA-----TTA---C--A---ATTCGGTGC-GCC-GCATCA-TCA-TC--CGA-C-GTTGCC-T-TTTTTAAAAATTTCTAAC-GG-AA--AGTGTTTGTAC-GT--ATAAAG-TCAT-AAAAATGTTATTT-AT-GA-CGTCAT-TTTATA-TAATTTTAT--ATTG-ACATGT--TT-GT-T-AG-ACCAT--AACAC-TTTTA-TTGATATA-A-TTATATTT-AAAAT-AT---A-ATGTTTG--T--ACA-A-TAAAATATA----GAGC-A-A-A-A-TTT--CAAC-CG--AAG-TGC---TCTTTT-CGAACG-TGCAAAAAA-A-TCG-GTGCGC-CG------ATTACTGATATTTTGCACC--TTTTAAA-TGCC--GTT--TTCA--TA--TTT--GT-TTG-TAACC-AAAAC--CTTGATA-TTTT---TT----G---TG-AAAATTACGATTATACCAT-C----CACT-A---ACA-ATAGG-C-AAAAT------------------TT--AGTA--AAG-TTT-GGTGAC---GT--AGTTT--A--TG-AAATATC-TAAA-AAG--T---T-CGC-G-TTTT-----TCT-G-GGAC-AACCCTCGTA
gi|5 : AAACTTCTGTTCCCTTCA-CAA--TGATTGTGTTTTTTT----AA-TG-CGTAGCA-GCTATATAATAGATATG--CAAAAAATGCTAGTA-TGACCG-TTC--T-TATCTTC--ACAGGTTTTAA-GGTTA---TGCCGT-TTCT--
gi|5 : aT---TTTTAA-GTTTTGGTT--CGTTCTCTAATTTTGATTCG--G-TTCCTCACCACGCACCTACGTTCCGCATAA-GATTA---T-CT--CACC-ACACC-ATCCT-TGAAACTTTT-TA-GTGTCATGTGTAATACC-AATAG-T--C-CGAGACACATGTT-GTGT---CGT--TCTA--TGATTGCTTTTGTTCATCTTTCTTTTTAGT-TT-GAATAGAGATTTCAAAC-TC---G-C-TCCACAGCGT-A-T-GCA-----TTA---C--A---AT-CGTTGCTGCC-GCATTAGTCA-TC--TGAAC-GTTGCCAT-TTTT--GAAATTTCTAAC-AG-A---GGTGTT-GTAC-GT--ATA-CG-TCAT-AAAA-TGTTATTT-TA-GAGTATC-T-TTTATA-TAATTTTAT--ACTG-ACAAG---TT-GT-T-AGAACCCT--AACGCTTTTTA-TTGCTACG-ATTTATATTT-AAAAT-AT---A-ATGTTTG--T--AAA-A-T-AAATATA----GAGC-GCA-A-A-TTT--TAACGCG--AAG-TGC----CTTTT--GAACG-TGCAAAAAA-A-TCG-GTGCGTGCG------ATctgcctttttaagttttggttcgttctctaattttgattcggttcctcaccacgcacctacgttccgcataagattatctcaccacaccatccttgaaactttttagtgtcatgtgtaataccaatagtccgagacacatgttgtgtcgttctatgattgcttttgttcatctttctttttagtttgaatagagatttcaaactcgctccacagcgtatgcattacaatcgttgctgccgcattagtcatctgaacgttgccatttttgaaatttctaacagaggtgttgtacgtatacgtcataaaatgttattttagagtatcttttatataattttatactgacaagttgttagaaccctaacgctttttattgctacgatttatatttaaaatataatgtttgtaaaataaatatagagcgcaaattttaacgcgaagtgccttttgaacgtgcaaaaaaatcggtgcgtgcgatgggttctatctaatgaatagaattgctcctttgccaggcggaggaagtggcactattattaaaaaaaattgcctgttcattttttctcccccaatattcttcgtttggtcagacccgattaaccattacatgatttatttttttatttaaaaattacgattattatcgacatactatagacgtataggtcgaaatacaaggcgaatatcaactttggtacaaagtgtgtgactgcgtagttttaatgtaaaaatcgtaaaaagtggatcgccgttttttttttctgggacacccttatacagctaaaatat
gi|5 : aaaacttctgttcccttcacaatgattgtgtttttttaatgcgtagcagctatataatagatatgcaaaaaatgctagtatgaccgttcttatcttcacaggttttaaggttatgccgtttctctgccTA-TTTT---TT----TATTTA-AAAATTACGATTAT--TAT-CGACATACT-ATAGACGTATAGGTC-GAAATACAAGGCGAATATCAACTTT--GGTACAAAG-TGT-G-TGACTGCGT--AGTTTTAA--TGTAAAAATCGTAAA-AAG--TGGAT-CGCCG-TTTTTTTTTTCT-G-GGAC--ACCCTTATAgggttctatctaatgaatagaattgctcctttgccaggcggaggaagtggcactattattaaaaaaaattgcctgttcattttttctcccccaatattcttcgtttggtcagacccgattaaccattacatgatttatttttttatttaaaaattacgattattatcgacatactatagacgtataggtcgaaatacaaggcgaatatcaactttggtacaaagtgtgtgactgcgtagttttaatgtaaaaatcgtaaaaagtggatcgccgttttttttttctgggacacccttatacagctaaaatat
gi|6 : aaaacttctgttcccttcacaatgattgtgtttttttaatgcgtagcagctatataatagatatgcaaaaaatgctagtatgaccgttcttatcttcacaggttttaaggttatgccgtttctctgcctttttaagttttggttcgttctctaattttgattcggttcctcaccacgcacctacgttccgcataagattatctcaccacaccatccttgaaactttttagtgtcatgtgtaataccaatagtccgagacacatgttgtgtcgttctatgattgcttttgttcatctttctttttagtttgaatagagatttcaaactcgctccacagcgtatgcattacaatcgttgctgccgcattagtcatctgaacgttgccatttttgaaatttctaacagaggtgttgtacgtatacgtcataaaatgttattttagagtatcttttatataattttatactgacaagttgttagaaccctaacgctttttattgctacgatttatatttaaaatataatgtttgtaaaataaatatagagcgcaaattttaacgcgaagtgccttttgaacgtgcaaaaaaatcggtgcgtgcgatgggttctatctaatgaatagaattgctcctttgccaggcggaggaagtggcactattattaaaaaaaattgcctgttcattttttctcccccaatattcttcgtttggtcagacccgattaaccattacatgattCGAGGGTTGT--CCCA-GAA--AAACGCGAA-CATT-T---CATA-TAT-TTTT-TGTGA-AACTTCTAG--T--ATAT------C--ATTATTAT-TTGA--A--ACACAA-CAAAATGAT------CATT-TTCTGAATATCGATC--G---CTG--TG----AAA-TT--TTACTG-CATTTTGT----CTG---TAAAT-----ACT-------TT--TATCACA----CTTT--A---A--CCAG-TC-T-TA-C-T---------AT-AG-CT-GCCG--GCGC-AAC--GCTG-A-C-G--C-AT--C------AAA--CG-TAAA--CT-TC-G--T--GA---T--TTGTTAACGG----TCAT-A-TCATCTGTTTTCTC-AAAATA--CG-TCC-----A---TATGA---GAA---AA--TACATTC-C-A--T-ATC-GCTTAC-C-ATNN--N-NNNNNNNNNNNNNNNNNNNNNNAAAAAAA--CG-TT-T-CTGA-ACT-AAGAGATG---Tcagctaaaatat
gi|7 : ta-TTTTA-TTGATATA-A-TTATATTT-AAAAT-AT---T-ATGTTTG--T--ACA-A-TAAAATATA----GACC-A-A-A-A-TTT--CAAC-CG--AAG-TGC---TCTTTT-CGAACG-TGCAAAAAA-A-TCG-GTGTGC-CG------ATTACTGATATTTTGCACC--TTTTAAA-TGCC--GTT--TTCA--TA--TTT--GT-TTG-TAACC-AAAAC--CTTAATA-TTTT---TT----G---TG-AAAATTACTATTATACCAT-C----CACT-A---ACA-ATAGG-C-AAATT------------------TT--TGTA--AAG-TTT-GGTGAC---GT--AGTTT--A--TG-AAATATC-TAAA-AAG--T---T-CGC-G-TTTT-----TCA-G-GGAC-AACCCTCGTAg
gi|8 : -TTTTA-TTGATATA-G-TTATATTT-AAAAT-AC---A-ACGTTTG--T--GAA-A-TAAAATATA----GAGC-G-A-A-A-TTT--CAAC-CG--AAG-TGC---TCTTTT-CGAACG-TGCAAAAAA-A-TCG-GTGGGC-CG------ATTACTGATATTTTGCACC--TTTTAAA-TGCC--GTT--TTCA--TA--TTT--GT-TTG-TGACCAAAAAC--CTTAAGATTTTT---TT----G---TG-AAAATTACGATTATATCAT-C----CATT-A---ACA-ATCGT-C-AAAAT------------------TT--AGTA--AAG-TTT-GATGAC---GT--AGTT
gi|9 : AAAATG-----------T-ATCTGGAC----ATA--GTCCCTG--TGCCAAAAGTTTGTTCAATG---TCTTGTAGTCCTGAGTCAAATTTAACATTATCATTATT--TATCACAGTTTCTTT--ATATG--CCAT-TC-TCTT-CAC-A-T---A-AT-AG-CT-G-CG--GCGCTAAC--TCTG-A-CGGA-CTGC--CAA----AAA--CG-T-AAT-TT-TC-A--TTCGATTGCTACTGTTAAC-GAAGTCCAT-ATTTATA--TCTTCTCTAAAAT
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|16 ): ATTGAAATAGTACTAATGAAAACTAAAGTGAAGTA