lowQualScore : 1111111111111111 11111111111111111111111111111111111111111111111111 33333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333 11111111111111111111111111111111111111111111111111111111
lowQualScore : 2222 1 111 1 1111111111111111 1 22222 11 1 11 22222222222 00000000000000000000000000000000000000000000000000 11 11 6666666666666 1 222222222 55555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555 1 1 5555555555555 11 11 888888888888888888888888888888888888888888888888888 1 11111 2222222 11 44444444444444444444444 1 1 777777777777777777777777777777777777777777777777777777777777 2 2 222 3333 11111 55555555555555 33333333333 111 1111 44444444444444444444444444444444444444444444444444444444 11111 1111 11111 22222222222222222
lowQualScore : 8888 0 0 3 6 6 777 0 0 4444444444444444 0 9 11111 3 88 0 22 88888888888 22222222222222222222222222222222222222222222222222 99 6 55 77 6 1 1 88 7 3333333333333 3 888888888 1 33333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333 0 0 1 0 0 0 2222222222222 11 2 0 11 000000000000000000000000000000000000000000000000000 8 8 8 1 8 88 6 22222 3333333 66 3 11111111111111111111111 0 77 0 6 444444444444444444444444444444444444444444444444444444444444 4 2 6 0 0 7 888 2222 3 55555 00000000000000 22222222222 3 1 6 444 3333 22222222222222222222222222222222222222222222222222222222 55 55 4 4 11111 2222 777 55 00000 55555555555555555 3 3 55 0 3 4 4
lowQualScore : .... . . . . . ... . . ................ . . ..... . .. . .. ........... .................................................. .. . .. .. . . . .. . ............. . ......... . .................................................................................................................................................. . . . . . . ............. .. . . .. ................................................... . . . . . .. . ..... ....... .. . ....................... . .. . . ............................................................ . . . . . . ... .... . ..... .............. ........... . . . ... .... ........................................................ .. .. . . ..... .... ... .. ..... ................. . . .. . . . .
lowQualScore : 3333 0 8 8 0 0 555 8 0 0000000000000000 0 0 55555 2 88 0 00 55555555555 33333333333333333333333333333333333333333333333333 22 7 88 77 7 0 0 00 3 3333333333333 3 333333333 0 88888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888 0 2 2 2 0 2 0000000000000 00 8 8 00 777777777777777777777777777777777777777777777777777 0 0 0 4 0 88 0 00000 2222222 55 2 22222222222222222222222 0 88 0 5 333333333333333333333333333333333333333333333333333333333333 0 5 0 0 0 3 000 6666 8 44444 88888888888888 22222222222 7 8 7 333 5555 44444444444444444444444444444444444444444444444444444444 55 55 0 0 11111 5555 000 55 00000 55555555555555555 6 6 00 5 6 0 0
consensus : ACATGTGACATGTACA----GACTGTACAAAAA-AATGTACACTTTTTCAA-TTGAATT-CACGCT-C---ATGTACAGACTGTACA-CCAAAATTCAC--G--CTAAATGATAA-TTGTGCAAATCCTTTAAATTCA-G-TCTTTAGA----A-CAGCTGTTTTGATTACGCAA---------T----C------CA---TTTCT-GTACT------------GTGGGA-CTTCGACATGCT-TG--ATA-GAT-CACGGACAAAAGGTGTG-TCCACAACA---G-GTCAG--AAGTGGTTCGAACA-AT--TCCGTTGATA-------ATTAAGCCAAGCCCCTGNTGNCTGATGTTCTTTTCAATTTGATGTTCNNATNTTAACAGNGATACAGCGTGAAANCAAAANCNCTAGGCTGTGTAT-A-GNCATCGTAATCAT-GAGGCTGGA-ATAAAAA--AG-GCCAA-TTTCCTAGA-AAGCA------AT--C--TT--TATGACTTT--GAAA-ATA-TTTTAAAATC-----T-----T----------------TAAATGGCT-T-T-GTAA-GAATAAT-TAAT-AAAA-ATC-TATG-NTAAT-TTTAATCGTAAGTT--TNAGTGTGTCACC-----A--AA-TGTGATCACC-CGAATTTCCTCTAA-TTTT-CT---AATCG-----NAA-A-TGC-AGG-T------A-TGNATG--------GAAANTAGNAATGTATGAAGCTATTTAAAGGTCTC-ACA-TATACAATCAAATCATGGAAA-TTGTG-AAACA-TTTCTCGGC------ATA--ATACTTTTA-TGGACATAT--GAAAC-A--TTTTA----GT-ATCGATAT---TTG--TGCACA-GATTT---N-GTA----CCACA---TTTTGC--AAA--CT-TGTGTACA-GATTTT-----TCACTCAA----AAT---CACG--C-----TTTTTCAAAGGCATT-----------------GTACAG-ATT-T--GGGGTTGAAA-AATTA-TCACA-TGTATGC
Reference ( gi|1 ) : ACATGTGATATGTACA----GACTGTACAAAAA-AATGTACACTTTCTTAA-TGGAATT-CACGCTGTAAAGTGTAAAGACTGTACA-CAAAAATTCAC--G--CTAAATGATAAATTGTGCAAATCCTTTAAATTCA-G-CCTTGAGA----A-CAGCTGTTTTGATTATGCAA---------T----C------CA---TTTCT-GTACT------------GTGGGA-CTTCGATATGCT-TG--ATA-GAT-CACGGACAAAAGGTGTG-TCCACAACA---G-GTCAATTAAGTGGATTGAACCTAT--TCCATTAATA-------ATTA--CCAA-----TGATACCTGA---------CACCT-----TTTGCATA---A-AAGGATACAA-ATAA--TTAAA-TCACTAGGCTGTGTAT-G-GACATTGTAGTCAT-GAGGTTGAAAATAAAAACCAA-ATCAA-TTTCCTAGA-AAGCA------AC--C--TT--TACGACTTT--GAAA-ACA-TTTCAAAACC-----T-----T----------------TAAATGGCT-T-T-GTAA-GAATAAT-TAAT-AAAA-ATC-TATG-TTAAC-TTTAATTTTAAGTT--TTAGTGTGTCACC-----A--AA-TGTGATCATC-CGAATTTCCTCTAA-CTTT-CA---AATCG-----AAA-A-TGCAAGG-T------A-TGTATG--------AAAATTAGGAGTG-ATGAAG-TATTTAAAGGTC---ACA-TATACAATCAAATTATGGAAA-TTGTGCCAACA-TTTCTCAGC------TTA--ATACTTTTA-TAGACATAT--GAAAC-A--TTTTATACGGTAATTGATAT---TTGTCTGCATA-GATTT---A-GTC----TCAGGGTTTTTTGC--AAA--CT-TGTGTACA-GATTTT-----TCACTCAA----AAT---CACG--C-----TTTTTCAAAGGCATT-----------------GTACAG-ATT-T--GGGGTTGAAA-AATTA-TCACA-TGTATGC
gi|14 : ACATGTGATAAGTACATGCAGACTGTACAAAAA-AATGCACACTTTTTCAA-CTTACTTTCACGCTGCAACGC-------CTGTACA-CCAAAATTCAC--A--CAAAATGATAATTTTTGCAAATCCATTAAATTCA-G-TCT----A----A-CAGCTGTTCTTATTATGCAA---------C----C------CA---TT
gi|10 : TGACATGTACA----GACTGTACAAAAATAAAGT-CACTTTTTCAA-TTGAAAT-CACATTTTC---TG------CTGTACATCAATAATTCACCAGACCTAAATGATAA--TGTGCAAATCCTTTAAATTCATGTCCTTTAGA----AACAGCTGTTTTGATTATGCAA---------TC---C------CAT--TTTCTAATACCTGACAGTAAAAGGTGGGA--TTTGATATGCTCTGA-ATATAAT-CATGGATAAAAGGTGTG-TCCAC
gi|20 : ATGTACA----GACTGTACACCAA-AATTCACGCT
gi|20 : tgtacaaaaaaatgtacactttttcaatagaattcacgTGTACAAAAA-AATGTACACTTTTTCAA-TAGAATT-CACG-------ATGTACAGACTGTACA-CCAAAATTCAC--G--CTAAATGATAAATTGAGCAAATCCTTTAAAaaatgataaattgagcaaatcctttaaag
gi|12 : GTAC-CTTTTTCAAATTGAGTT-CACG-------ATGTACAGATTGTACA-CCAAAACACAC--G--CT-----------TGTGCAAATCCTTTAAATTCA-G-TCTTTAGA----A-CAGCTGTTTTGATTACGCAA---------T----C------CA---TT-------------------------GG-CTTTGATATGCT-TG--ATA-GAT-CACGGATAAAAGGCGTG-TCCACAAC--------------AGTGGTTTGAACACAT--TCCATTGATA-------ATg
gi|2 : CTATAAATTCA-G-TTTTTAGACACTG-CAGCTGTTTTGATTACGCAAAACTCCAGAT----CACAATGCA---TTTCT-GTACTTGTAC-------GTGGGAACTTCGATATGCT-GG--ATC-GATTCA-GGACAA--GGTGTGGTCCACAACA---GCGTCAATTAAGTGGTTTGAACC-AT--GCAACTGACACCTTTGCATTA------------GATGTTTG--------------------TTCAAATATTAACAGGGATATAACATAAAATTAAAATCTCTAGGCTGT-----------CTGTA-TCAT-GAGGTTAAAAATAAAAAC-AG-ACCAAATTTCCTAGA-AAGCA------AA--CTTTT--TATGACTTT--GAAA-ACA-TTT--AAACC-----TTAATAT----------------TAAAATGCT-T-TCGTAA-GAATAA--TAATAAAAA-ATC-TATG-ATAAC-TTTAATTT--AGTT--TACGTGCGT-ACCCGGTGA--AA-TGTGATCATC-CGAATTTCCTCT-------------AATCG-----AAA-ATTGC-AGG-T------ATTGCAAA--------GAAATTAGGAATG-ATGAAG-TA-TTAAAGGTC---ACA-TA-AC-ATCAAATTATGGAAATTTATG-CAACATTTTCTCAGCTTCCGGTTA--AT--CTTTA-TAGACATAT--GAAAC-A--TTTTATA----A--TGATAT---TCG-CTGCATA-GATTT---A-GTA----CCACA---TTTTGC--AAA--TT-TGTGTACAGGATTTT-----TCACTCAAT---AAT---CAAG--C-----TTTTTCAAAGGCATT-----------------GAACAG-CTT-TCGGGGGTTGAAA-ACTTA-TCACA-
gi|4 : aTTTTGATTGCGTAA---------CTTGAC------TAGGGTTTCC-TAACT------------ATGGGA-CTTCGACATGCT-TG--GCA-GAT-CGCGGACAAAA-GTAT--TCCAC--CATTTG-GTCAG--AAATAAGTCAAACAGATGGTATGTTAAT---------TTAAGCCAAGCCCCTGCTAACTGATGTTCTTTTCAATTTGATGTTTTCATT---A-AAT--TACAG-GTGA--ACAAA-ACA-TATGAT---TATCA-GGCATCGTAATTAT-GAGG------ATAAGG---AG-GCCAA-TTTCCTACA-AATCATTTATTACTTC--CT--TACG-CTTT--TTAA-ATC-TT----AATT-----T-----T----------------CAAATGtgt
gi|3 : tgtaatgcattaggccaaaaaaaaaaaatatgtctgtttcctgctgcccgaccgaccaggactcaaaacccgacctggatttttttttttttttttttaaatccgaataacatttaaaatgttgacaaatccaaagagcattccaatttgcagattttatggctatataaattcagtctaacagttaattcactacaatttaaggccaatgtAA---------T----CA-----CA---TGTAT-GTACT-----------------A-CT---ACATGCT-GGGCATA--AT-CACAGACAAAAAGTGC--TCCAC
gi|5 : tttcctaccgccgaaccgaccatgactcaaaaaccctcgacctggatttttttttttttttaaatccgaataaacatctttaatatgttgcagaatcagaaaaacattccaatttgcagccattttttttaggtctataaaatcagtgttatacagttataattcaatacaatttttaagtccaatgtgtgttgaattgcgtaacacttgactagggtttaacct---TTTCT-A-ACT------------ATGGGA-ATTCGACATGCT-TG--GCA-GAT-CACGGACGAAAGcattgttgtcagatatgaatagaagcaagactaggtaactccatactaaatttattaatcctgcaacattgagttctttttcatttttattaataaaatgttttcattaaagtcagtgaacaaaacaaagcggagtcaaagagatgattatcactgggtcatactaggttagcatcttaattattgaggataagggaggccaattcctatcaaaacccattaatacttaccctctaacgctttttaaaccatcaattaattttcaaatg
gi|6 : gccaaaaaaatataagtctgtttcctgctgcccgaccgacctggactcaaaacccccgacctggatttttaaaaaaaaatttctcttgttttaaaaattttgagtaacatttaaaatgttggcaaatcaaggaattcatatctatatataaatcagtcttcactacaattaaagtccagtgtgttgattgcgtaaccactttcaaatagggtGGCTGTATTT-GAGACATAGCAATTAA-GAGG------ATAAAAA---G-GTCAA-TATTCAAGA-AAACA------TT--T--TT--CATTATTTT--GAAA-ATAGTTTTAAAATCTTATTT-----T----------------TGAATG--T-TAT-GTTG-GAATAAT-TAATCAAAA-ATC-GATG-tactccgccatgtggactcagacatgccaagccttgaattattaaccctgctaattgatggttttttttcattttgatgttgttttcagtaaattatgggtaaacaaaataaaagcagtcaacgtataattgtcaaaatacaaggtttgggcatcgtaattatgaggataagaaggccaatttccttcaaagcacaatttcttactt
gi|9 : atttgaattagaatttatttcaaattatttaaagataaacaaaatgcaggtggtttGTAT-A-GTTATCATAATCATAGAGGCTGGA---------CAAGACCAA-TTTACCAAATAAGAG------AT--C--TTATTATGACTTT--GAAATATA-TTTTAAAAGC-----T-----TGAGAAAAAATTATTTTTAAATG-CT-T-T-GTAAAGAGTAATATGAT-AAAA---T-TATG-T-AATATTTAGTTGTAAGTT--T-AGT-TG-CAAC-----AGCAA-TGTGATC--CGCGAATTTC-TCTAA-TTTT-CA---TATCG-----CAA-A-TGCAAGGAT------A-TATATG--------atctcttctacttgtctttattgatcattagaaatttttagataggtaaagaaggtctcaacaacaatcaaatcatggaaattctcggcatcataatttaatggacatatgcaaccattttatgattgatattttgtacagattttgtaccacattttgtaaacttgtgtacagattattcactaaaaatcacacctttgcaaagtgtacagatttgtggttgaaaaataatcatgtatgta
gi|16 : cT--TATGACTTTTTGAAA-TC---TT---AATT-----T-----T----------------CATATGG-T-T-T-ATAA-GAATAAT-TAAC-GAAA-ATTGTATGAGTAA--TTTAATCATAAG-T--TCATTGTGCCTCC-----A--AATTGTGATAACC-CGAATTTCTTCTCATCTTTACT---ATTCG-----CAA-A-TG
gi|7 : -TTTCAAAAT-------------------------------AATG--TAT-T-GTTA-AAATAAT-TGAT-AAAACACC-TAT--TTCAT-TTTAACTGCAAGTTGATTA---TGTCACC-----G--AA-TATAATCACC-CGAATTTCCTCTAA-TTTT-TTTTTAATCGCTTGCAAATA-TGCCAGT-TTGGACAA-TGAATGTTGAATTAAAAAATAGCAATGTATGAAACTATTCTGAGACC---ACAGCATA-GATC---TCGTGGAA-----------TA-TTT-TCAGC------ATATTATATTTATACTAAACGTAT--GACACCA--TTTT-----GTTATCAATGTACTTTGT--GCA---GATTT---TTGTA----CCA---TATTTAGC--AAA--TT-TGCATGCA-TATTTT-----TCACTCAA----AAT---CACA--C-----TTTTTTTAAGGCCTC-----------------GTACAA-ATT-T--AAGGTTG-AA-AATTA-TCACA-TGT
gi|8 : aacactttttaaatcttaatATATAAAGGTCTCCACA----ACAATCAGATCATGGAAT-TTGTTGAAATA-TTTCTTGGC------ATC--ATACTTTCA-TGGACATATTAAAAAC-A--TTTTA-----------ATAT---TT---TGTACA-GATTT---T-GTA----CCACA---TTTTGC--AAA--CT-TGTGTACA-GATTTT-----TCATTTAA----AAT---CACA--C-----CGTTTTAAAGGTATT-----------------GCACAG-ATT-T--GTGGTTGAAA-AATTA-TCAC---GTATGCt
gi|15 : gttatgttggaataattgattaaatctttattcAAAGGTC---ACA-TATACAATC---------ACA-TTGTGCAAACA-TTTCTCAGC------TTA--AGATT-----TAG---TAC----CAC-A--TTTT-----GCAA-----AC---TTG--TGTACA-GATTTTTCA-CTCAAAATCACGCTTTTT--C--AAAGGCA-T-TGTACA-GATTTat
gi|6 : AAGGTCTCAACA----ACAATCAAATCATGGAAA-TT-------------CTCGGC------ATC--ATAATTTAA-TGGACATAT--GCAACCA--TTTTATG-----ATTGATAT---TT---TGTACA-GATTT---T-GTA----CCACA---TTTTGT--AAA--CT-TGTGTACA-GATTAT-----TCACTAAA----AAT---CACA--C-----CTTTGCAAAG----T-----------------GTACAG-ATT-T--GTGGTTGAAA-AATAA-T--CA-TGTATGggggttgaaaaattatcacatgtatgt
gi|11 : atttgaattagaatttatttcaaattatttaaagataaacaaaatgcaggtggtttggctgtatttgagacatagcaattaagaggataaaaaggtcaatattcaagaaaacatttttcattattttgaaaatagttttaaaatcttatttttgaatgttatgttggaataattaatcaaaaatcgatgatctcttctacttgtctttattgatcattagaaatttttagataggtaaagACTTTTA-TGTACATAT--TAAAC-ACATTTT-----GTGATTGATAT---TT---TGTACA-GATTT---T-GTA----CCACA--TTTTTGC--AAA--CT-TGTGTATA-GATTTT-----TGACTCAATTATAAT---CACA--C-----CTTTATAAAGGCATT-----------------GTACAG-GTT-T--GTGCTTG-AA-AATTA-TCACA-TGTAta
gi|15 : tcaaatgattaaaaactacacaaaatgaaaacggcACAT---TTCTCAGCTTAAGATTT---A-GTA----CCACA---TTTTGC--AAA--CT-TGTGTACA-GATTTT-----TCACTCAA----AAT---CACG--C-----TTTTTCAAAGGCATT-----------------GTACAG-ATT-T--GGGGTTGAAA-AATTA-TCACA-TGTATG
gi|18 : aaaggtcacatatacaatcacattgtgcaaTTTTTG---AAA--CT-TGTGCACA-GATGTT-----TC-TTC------ACT---CACG--CAATGGTTTTTTAAGTTCATG-----------------GCTCAG-ATTCT--GGGGTTGAAATAATTATTCAAACTGTATGt
gi|19 : gggttatgaTTGCCAAAA--CTATGT-TACA-GATGTTATCAATTATTAAA----AATACTTACGGCC-----TTTGTAAAAGCCATT-----------------GTACAGAATC-T--GCAGTTGAAA-AAaga
gi|17 : attaggtatcaccta--AGA--CT-TGTGTACA-GATTTT-----TCACTCAA----AAT---CACG--C-----TTTTATAAAGGCATTTATAAGCGCATTGTACAGTACAG-CTT-T--GGGGTTCAAA-AATTA-TAACA-TGTAT
gi|21 : cattatgtaatAA----AAT---CACG--C-----TTTTTCAAAGGCATT-----------------GTACAG-ATT-T--AGGGTTGAAA-ATTTA-TCACA-TGTATG
gi|22 : TTCAAAGGCATT-----------------GTACAG-CTT-T--GGGGTTAAAA-AATTA-TCACA-TGTAT
1 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|13 ): CATTCATCCTAGAAAAACACTGAGGAAATTACGTATTTGTACTTCGCATAAGGCCAAACCAAAAAAAAAAAGTCTGTTTCCTGCTGCCCGGCCCACCTTGATGCCTGGGATTTTTTTTTTTTTTTTTTTTTGGGTCTTAAAAATTCCGAATATTAAACATTAAATAATTGATGAATC
Alignments
lowQualScore : 2222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
lowQualScore : 2222 1 444444444 11111 22 333333333333333333333 9999999999999999999999999999999999999999999999999999999 11 11 7777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777 22222222222222222 666666666666666 22222 11111 22222222 6666666666666666666666666 22 111 111 111 11 11 11 11111111 666666666666666666666666666666666666666666666666666666666 111 1 2 3333333333 2222222 222222222 33333333 111 222 11111 1111 22222222222222222
lowQualScore : 0 8888 0 0 0 8 1 8 555555555 6 5 8 55555 0 8 11 6 6 333333333333333333333 1111111111111111111111111111111111111111111111111111111 66 5 33 5 5 77 7 0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 55555555555555555 666 111111111111111 999 666 33333 99 00000 11111111 5 4444444444444444444444444 2 1 22 6 6 000 222 6 999 00 6 55 00 1 3 44 99999999 6 7 99 3 1 111111111111111111111111111111111111111111111111111111111 1 777 1 5 3 7 99 0000000000 5 2222222 6 0 4 777777777 1 6 99 6 6 99 33333333 9 111 222 7 5 1 777 4 55 777 4 4 00000 1111 666 55 99999 33333333333333333 3 3 44 3 3 3
lowQualScore : . .... . . . . . . ......... . . . ..... . . .. . . ..................... ....................................................... .. . .. . . .. . .......................................................................................................................................................................................................... ................. ... ............... ... ... ..... .. ..... ........ . ......................... . . .. . . ... ... . ... .. . .. .. . . .. ........ . . .. . . ......................................................... . ... . . . . .. .......... . ....... . . . ......... . . .. . . .. ........ . ... ... . . . ... . .. ... . . ..... .... ... .. ..... ................. . . .. . . .
lowQualScore : 7 3333 0 8 8 0 0 0 444444444 0 6 0 22222 8 0 66 7 7 555555555555555555555 7777777777777777777777777777777777777777777777777777777 44 7 66 7 7 11 2 8888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888 00000000000000000 111 000000000000000 444 888 66666 22 11111 66666666 7 3333333333333333333333333 4 7 88 7 7 000 555 7 000 88 7 77 77 0 7 22 33333333 7 3 22 7 7 999999999999999999999999999999999999999999999999999999999 0 555 0 5 2 5 66 5555555555 7 3333333 7 7 0 333333333 0 7 22 7 7 22 55555555 0 777 555 8 0 0 000 0 55 000 0 0 00000 4444 444 00 11111 33333333333333333 3 3 66 3 6 6
consensus : ACATGTGATATGTACA----GACTGTACAAAAA-AATGTACACTTTTTCAA-TTGAA-TTCACGCTGCA---TGTACAGACTGTACACCAA-AATTCAC--G--CTAAATGAT-AA-TTGTGCAAATCCTTTAAATTCA-GT-CTT---TAG-A----A--------CAGCTGTTTTGATTACGCAA---------T----CA-----CA--------TTTCT-GTACT------------GTGGGA-CTTCGACATGCT-TG--ATA-GAT-CACGGACAAAAGGTGTG-TCCACAACG---G--G--TCAG--AAGTGGNTCGAA-----------CA-AT--TCCAT--TG-A--TAATTAA-CCAA--CCCTGCTAAC--T--GACG--TTCTTTTCAATTT----------GATGTT--------TNNAT------TTAA---CAG-G----A-TA--------CAACGTGAA-A---TCAAA---------ATCACTAGG-----CTGTGTAT-AGGCATCGTAATCA-T-GAGG-T--AA-TAAAGA--AGGCCAA-T-TTCCTANA-AAGCAA--TCTT--TATGACTT--T--GAAA-AC----ATTTT-AA-----AA----------------TTTTTAAATG-CT-TTGTAA-GAATAAT-TAATAAAA-A-TC-TATG--TAAT-TTT-AATTNTAAGTTTNAGTGTGTCACC-----A--AA-TGTGATCACCCGA--ATTTCCTCTAATTTT--CT---A-ATCGC-----AA-AT-GC-A--GGT-------AT-GTATG--------GAAATT---AGGAATGTATGAAG-TATTTAAAGGTCTCACATA-ACAATCAAATCATGGAAATT-GT-G-NAACATTT-CTCGGCNT------A--ATACTTTTA-TGGACATAT--GA-AAC-A--TTTTA----NT-ATTGATA---TTTG--TGCACAGA-TTTNGTACCACA---TTTT-GC--AA---ACT-TGTGTACA-GATTTT-----TCACTCAA----AAT---CACG--C-----TTTTTCAAAGGCATT-----------------GTACAG-ATT-T--GGGGTTGAAA-AATTA-TCACA-TGTATGC
Reference ( family-1524 ) : ACATGTGACATGTACA----GACTGTACAAAAA-AATGTACACTTTTTCAA-TTGAA-TTCACGCT-CA---TGTACAGACTGTACACCAA-AATTCAC--G--CTAAATGAT-AA-TTGTGCAAATCCTTTAAATTCA-GT-CTT---TAG-A----A--------CAGCTGTTTTGATTACGCAA---------T----C------CA--------TTTCT-GTACT------------GTGGGA-CTTCGACATGCT-TG--ATA-GAT-CACGGACAAAAGGTGTG-TCCACAACA---G--G--TCAG--AAGTGGTTCGAA-----------CA-AT--TCCGT--TG-A--TAATTAAGCCAAGCCCCTGNTGNC--T--GATG--TTCTTTTCAATTT----------GATGTT--------CNNAT-----NTTAA---CAGNG----A-TA--------CAGCGTGAA-A---NCAAA---------ANCNCTAGG-----CTGTGTAT-AGNCATCGTAATCA-T-GAGGCTGGAA-TAAAAA--AGGCCAA-T-TTCCTAGA-AAGCAA--TCTT--TATGACTT--T--GAAA-AT----ATTTT-AA-----AA----------------TCTTTAAATGGCT-TTGTAA-GAATAAT-TAATAAAA-A-TC-TATG-NTAAT-TTT-AATCGTAAGTTTNAGTGTGTCACC-----A--AA-TGTGATCACCCGA--ATTTCCTCTAATTTT--CT---A-ATCGN-----AA-AT-GC-A--GGT-------AT-GNATG--------GAAANT---AGNAATGTATGAAGCTATTTAAAGGTCTCACATATACAATCAAATCATGGAAATT-GT-G-AAACATTT-CTCGGCAT------A--ATACTTTTA-TGGACATAT--GA-AAC-A--TTTTA----GT-ATCGATA---TTTG--TGCACAGA-TTTNGTACCACA---TTTT-GC--AA---ACT-TGTGTACA-GATTTT-----TCACTCAA----AAT---CACG--C-----TTTTTCAAAGGCATT-----------------GTACAG-ATT-T--GGGGTTGAAA-AATTA-TCACA-TGTATGC
gi|1 : ACATGTGATATGTACA----GACTGTACAAAAA-AATGTACACTTTCTTAA-TGGAA-TTCACGCTGTAAAGTGTAAAGACTGTACACAAA-AATTCAC--G--CTAAATGAT-AAATTGTGCAAATCCTTTAAATTCA-GC-CTT---GAG-A----A--------CAGCTGTTTTGATTATGCAA---------T----C------CA--------TTTCT-GTACT------------GTGGGA-CTTCGATATGCT-TG--ATA-GAT-CACGGACAAAAGGTGTG-TCCACAACA---G--G--TCAATTAAGTGGATTGAA-----------CCTAT--TCCAT--TA-A--TAATTA--CCAA-----TGATACC--T--GACA--CCTTTTGCA----------------------------------------TAA---AAG-G----A-TA--------CA-----AATA---ATTAA---------ATCACTAGG-----CTGTGTAT-GGACATTGTAGTCA-T-GAGGTTGAAAATAAAAACCAAATCAA-T-TTCCTAGA-AAGCAA--CCTT--TACGACTT--T--GAAA-AC----ATTTC-AA-----AA----------------CCTTTAAATGGCT-TTGTAA-GAATAAT-TAATAAAA-A-TC-TATG-TTAAC-TTT-AATTTTAAGTTTTAGTGTGTCACC-----A--AA-TGTGATCATCCGA--ATTTCCTCTAACTTT--CA---A-ATCGA-----AA-AT-GCAA--GGT-------AT-GTATG--------AAAATT---AGGAGTG-ATGAAG-TATTTAAAGG--TCACATATACAATCAAATTATGGAAATT-GT-GCCAACATTT-CTCAGCTT------A--ATACTTTTA-TAGACATAT--GA-AAC-A--TTTTATACGGTAATTGATA---TTTGTCTGCATAGA-TTTAGTCTCAGGGTTTTTT-GC--AA---ACT-TGTGTACA-GATTTT-----TCACTCAA----AAT---CACG--C-----TTTTTCAAAGGCATT-----------------GTACAG-ATT-T--GGGGTTGAAA-AATTA-TCACA-TGTATGC
gi|10 : TGACATGTACA----GACTGTACAAAAATAAAGT-CACTTTTTCAA-TTGAA-ATCA-----CA---TTTTCTG-CTGTACATCAATAATTCACCAGACCTAAATGAT-AA--TGTGCAAATCCTTTAAATTCATGTCCTT---TAGAA----A--------CAGCTGTTTTGATTATGCAA---------TC---C------CAT-------TTTCTAATACCTGACAGTAAAAGGTGGGA--TTTGATATGCTCTGA-ATATAAT-CATGGATAAAAGGTGTG-TCCAC
gi|11 : ACTTTTA-TGTACATAT--TA-AAC-ACATTTT-----GTGATTGATA---TTT---TGTACAGA-TTTTGTACCACA---TTTTTGC--AA---ACT-TGTGTATA-GATTTT-----TGACTCAATTATAAT---CACA--C-----CTTTATAAAGGCATT-----------------GTACAG-GTT-T--GTGCTTG-AA-AATTA-TCACA-TGTA
gi|12 : tcaaatgattaaaaactacacaaaatgaaaacggcGTAC-CTTTTTCAAATTGAG-TTCACG----A---TGTACAGATTGTACACCAA-AACACAC--G--CT------------TGTGCAAATCCTTTAAATTCA-GT-CTT---TAG-A----A--------CAGCTGTTTTGATTACGCAA---------T----C------CA--------TT-------------------------GG-CTTTGATATGCT-TG--ATA-GAT-CACGGATAAAAGGCGTG-TCCACAAC-----------------AGTGGTTTGAA-----------CACAT--TCCAT--TG-A--TAAT
gi|14 : ACATGTGATAAGTACATGCAGACTGTACAAAAA-AATGCACACTTTTTCAA-CTTACTTTCACGCTGCA------AC-GCCTGTACACCAA-AATTCAC--A--CAAAATGAT-AATTTTTGCAAATCCATTAAATTCA-GT-CT--------A----A--------CAGCTGTTCTTATTATGCAA---------C----C------CA--------TT
gi|15 : AAAGGTC--ACATATACAATCA---C------ATT-GT-GCAAACATTT-CTCAGCTT------A--A
gi|15 : AGA-TTTAGTACCACA---TTTT-GC--AA---ACT-TGTGTACA-GATTTT-----TCACTCAA----AAT---CACG--C-----TTTTTCAAAGGCATT-----------------GTACAG-ATT-T--GGGGTTGAAA-AATTA-TCACA-TGTATGgatttagtaccacattttgcaaacttgtgtacagatttttcactcaaaatcacgctttttcaaaggcattgtacagatttggggttgaaaaattatcacatgtatgt
gi|16 : aaaggtcacatatacaatcacattgtgcaaacatttctcagcttaT--TATGACTT--TTTGAAA--------TCTT-AA-----------------------TTTTCATATGG-T-TTATAA-GAATAAT-TAACGAAA-A-TTGTATGAGTAA--TTT-AATCATAAG-TTCATTGTGCCTCC-----A--AATTGTGATAACCCGA--ATTTCTTCTCATCTTTACT---A-TTCGC-----AA-AT-Gt
gi|17 : CA---TTAT-GT--AATAGACT-TGTGTACA-GATTTT-----TCACTCAA----AAT---CACG--C-----TTTTATAAAGGCATTTATAAGCGCATTGTACAGTACAG-CTT-T--GGGGTTCAAA-AATTA-TAACA-TGTAT
gi|18 : ---TTTT-G---AA---ACT-TGTGCACA-GATGTT-----TC-TTC------ACT---CACG--CAATGGTTTTTTAAGTTCATG-----------------GCTCAG-ATTCT--GGGGTTGAAATAATTATTCAAACTGTATG
gi|19 : gggttatgatA-TTAGGTATCACC---TATT-GCCAAA---ACTATGT-TACA-GATGTTATCAATTATTAAA----AATACTTACGGCC-----TTTGTAAAAGCCATT-----------------GTACAGAATC-T--GCAGTTGAAA-AAaga
gi|2 : CTATAAATTCA-GT-TTT---TAG-ACACTG--------CAGCTGTTTTGATTACGCAAAACTCCAGAT----CACAATGCA--------TTTCT-GTACTTGTAC-------GTGGGAACTTCGATATGCT-GG--ATC-GATTCA-GGACAA--GGTGTGGTCCACAACA---GC-G--TCAATTAAGTGGTTTGAA-----------CC-AT--GCAAC--TG-A--CA-------------CCT-TTGCA--TTAGATG--TT-----------------------TGTT--------CAAAT-----ATTAA---CAGGG----A-TA--------TAACATAAA-A---TTAAA---------ATCTCTAGG-----CTGTCTGT-A----------TCA-T-GAGGTTAAAAATAAAAAC-AGACCAAAT-TTCCTAGA-AAGCAAACTTTT--TATGACTT--T--GAAA-AC----ATTTA-AACCTT-AA----------------TATTAAAATGCTT-TCGTAA-GAATAAT--AATAAAA-AATC-TATG-ATAAC-TTT-AAT--TTAGTTTACGTGCGT-ACCCGGTGA--AA-TGTGATCATCCGA--ATTTCCTCTAAT--------------CGA-----AA-ATTGC-A--GGT-------ATTGCAAA--------GAAATT---AGGAATG-ATGAAG-TATT-AAAGGTC--ACATA-ACA-TCAAATTATGGAAATTTAT-G-CAACATTTTCTCAGCTTCCGGTTA--AT--CTTTA-TAGACATAT--GA-AAC-A--TTTTA-----T-AATGATA---TTCGC-TGCATAGA-TTTAGTACCACA---TTTT-GC--AA---ATT-TGTGTACAGGATTTT-----TCACTCAAT---AAT---CAAG--C-----TTTTTCAAAGGCATT-----------------GAACAG-CTT-TCGGGGGTTGAAA-ACTTA-TCACA-
gi|20 : aTGTACAAAAA-AATGTACACTTTTTCAA-TAGAA-TTCACG----A---TGTACAGACTGTACACCAA-AATTCAC--G--CTAAATGATAAA-TTGAGCAAATCCTTTAAAtgt
gi|21 : AA----AAT---CACG--C-----TTTTTCAAAGGCATT-----------------GTACAG-ATT-T--AGGGTTGAAA-ATTTA-TCACA-TGTATGg
gi|22 : TTCAAAGGCATT-----------------GTACAG-CTT-T--GGGGTTAAAA-AATTA-TCACA-TGTAT
gi|3 : AA---------T----CA-----CA--------TGTAT-GTACT-----------------A-CT---ACATGCT-GGGCATA--AT-CACAGACAAAAAGTGC--TCCACCATT---GTTG--TCAG--ATATGAATAGAAGCAAGACTAGGTA-AC--TCCATACTA-AATTTATTAA-------TCCTGC-AACATT--GA-G--TTCTTTTTCATTTTTATTAATAAAATGTT--------TTCA-------TTAAAGTCAGTGAACAA-AA--------CAAAGCGGA-G---TCAAAGAGATGATTATCACTGGGTCATACTAGGT-T-AG-CATCTTAATTATT-GAGG-----A-TAAGGG--AGGCCAA---TTCCTA
gi|4 : tttcctaccgccgaaccgaccatgactcaaaaaccctcgacctggatttttttttttttttaaatccgaataaacatctttaatatgttgcagaatcagaaaaacattccaatttgcagccattttttttaggtctataaaatcagtgttatacagttataattcaatacaatttttaagtccaatgtgtgttgaattgcgtaacacttgactagggtttaacctTTTTGATTGCGTAA---------CTTGAC------TAGGG-----TTTCC-TAACT------------ATGGGA-CTTCGACATGCT-TG--GCA-GAT-CGCGGACAAAAG-TAT--TCCAC--CATTTG--G--TCAG--AAATAAGTCAAA-----------CAGATGGTATGT--TA-A--T--TTAAGCCAAGCCCCTGCTAAC--T--GATG--TTCTTTTCAATTT----------GATGTT--------TTCA-------TTAA------------ATTA--------CAG-GTGAA------CAAA---------A-CA-TATG-----AT---TATCAGGCATCGTAATTA-T-GAGG-----A-T-AAGG--AGGCCAA-T-TTCCTACA-AATCA-----TT--TATTACTTCCT--TACG-CT-----TTTT-AAATCTTAA----------------TTTTCAAATGtcaaaacccattaatacttaccctctaacgctttttaaaccatcaattaattttcaaatg
gi|5 : tgtaatgcattaggccaaaaaaaaaaaatatgtctgtttcctgctgcccgaccgaccaggactcaaaacccgacctggatttttttttttttttttttaaatccgaataacatttaaaatgttgacaaatccaaagagcattccaatttgcagattttatggctatataaattcagtctaacagttaattcactacaatttaaggccaatgtTAAAT-CA-GT-CTTCACTAC-A----ATTAAAGTCCAG-TGTGTTGATTGCGTAA---------C----CACTTT-CAAATAGGGTTTTCT-A-ACT------------ATGGGA-ATTCGACATGCT-TG--GCA-GAT-CACGGACGAAA-GTAC--TCCGCCATGT--G--GACTCAG--ACATG---C--------------CA-AG--CC--T--TGAA--TTATTAA-------CCCTGCTAAT--T--GATGGTTTTTTTTCATTTT----------GATGTTGTTTTCAGTAAATTATGGGTAAA---CA-AA----A-TAAAAGCAGTCAACGTATA-ATTGTCAAA---------AT-ACAAGG-----TT-----T-GGGCATCGTAATTA-T-GAGG-----A-T-AAGA--AGGCCAA-T-TTCCTTCA-AAGCA
gi|6 : gccaaaaaaatataagtctgtttcctgctgcccgaccgacctggactcaaaacccccgacctggatttttaaaaaaaaatttctcttgttttaaaaattttgagtaacatttaaaatgttggcaaatcaaggaattcatatctatataGG-----CTGTATTTGAGACATAGCAATTA-A-GAGG-----A-TAAAAA---GGTCAA-TATTC----------AA---------------------GAAA-AC----ATTTT--------------------------TCATTA-----TT-TTG--A-AAATAGT-T--TTAAA-A-TC-T-----TATT-TTTGAATGTTATGTTGGAATAATTAATC-----A--AA----AATC----GATGATCTCTTCTACTTGT--CT---TTATTG---------AT---------C-------AT----TA--------GAAATTTTTAGATAGGTA--AAG-------AAGGTCTCA-ACA-ACAATCAAATCATGGAAATT---------------CTCGGCAT------C--ATAATTTAA-TGGACATAT--GC-AACCA--TTTTA----TG-ATTGATA---TTT---TGTACAGA-TTTTGTACCACA---TTTT-GT--AA---ACT-TGTGTACA-GATTAT-----TCACTAAA----AAT---CACA--C-----CTTTGCAAAG----T-----------------GTACAG-ATT-T--GTGGTTGAAA-AATAA-T--CA-TGTATGcaatttcttactt
gi|7 : atttgaattagaatttatttcaaattatttaaagataaacaaaatgcaggtggtttACTT--T--TTAA-ATCTTAATTTTCAA-----AA----------------T-----AATG--TATTGTTA-AAATAAT-TGATAAAACA-CC-TAT--TTCAT-TTT-AACTGCAAGTT-GATTATGTCACC-----G--AA-TATAATCACCCGA--ATTTCCTCTAATTTT--TTTTTA-ATCGCTTGCAAATAT-GC-C--AGTTTGGACAAT-GAATGTTGAATTAAAAAAT---AGCAATGTATGAAACTATTCTGAG--------------ACCACAGCATAGATCTC-GT-G-GAATATTT--TCAGCAT------ATTATATTTATACTAAACGTAT--GACACC-A--TTTTG----TT-ATCAATGTACTTTG--TG--CAGATTTTTGTACCATA---TTTA-GC--AA---ATT-TGCATGCA-TATTTT-----TCACTCAA----AAT---CACA--C-----TTTTTTTAAGGCCTC-----------------GTACAA-ATT-T--AAGGTTG-AA-AATTA-TCACA-TGTta
gi|8 : aacATATAAAGGTCTC-CACA-ACAATCAGATCATGGAATTT-GTTG-AAATATTT-CTTGGCAT------C--ATACTTTCA-TGGACATATTAAA-AAC-A--TTTTA----AT-AT--------TTTG--T--ACAGA-TTTTGTACCACA---TTTT-GC--AA---ACT-TGTGTACA-GATTTT-----TCATTTAA----AAT---CACA--C-----CGTTTTAAAGGTATT-----------------GCACAG-ATT-T--GTGGTTGAAA-AATTA-TCAC---GTATGCt
gi|9 : gttatgttggaataattgattaaatctttattcGTAT-AGTTATCATAATCA-TAGAGGCTGGAC------A--AGACCAA-T-TTACCAAATAAGAGA--TCTTATTATGACTT--T--GAAATAT----ATTTT-AA-----AAGCTTGAGAAAAAATTATTTTTAAATG-CT-TTGTAAAGAGTAATATGATAAAA----T-TATG--TAATATTT-AGTTGTAAGTTT-AGT-TG-CAAC-----AGCAA-TGTGATC-CGCGA--ATTTC-TCTAATTTT--CA---T-ATCGC-----AA-AT-GC-AAGGAT-------AT-ATATG--------at
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|13 ): CATTCATCCTAGAAAAACACTGAGGAAATTACGTATTTGTACTTCGCATAAGGCCAAACCAAAAAAAAAAAGTCTGTTTCCTGCTGCCCGGCCCACCTTGATGCCTGGGATTTTTTTTTTTTTTTTTTTTTGGGTCTTAAAAATTCCGAATATTAAACATTAAATAATTGATGAATC
Alignments
lowQualScore : 1111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 2222 1 33333333333333 11111 22 333333333333333333333 888888888888888888888888888888888888888888888888888 11 11 5555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555 22222222222222 1 555555 11111 2222222222222222222222 1111111 7777777777777777777777777777 1111 111 111 1111 11 11 11111111 333333333 11 222222 1 2222 222 222 3333333333333 22222222 1111111 222222222 1111 22222 111 11111 11111 1111 22222222222222222
lowQualScore : 8888 0 0 0 8 1 8 77777777777777 0 8 55555 0 8 11 6 6 333333333333333333333 999999999999999999999999999999999999999999999999999 66 5 33 5 5 4 77 3 9999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999 1 66666666666666 1 777777 0 44444 999 8888 9999999999999999999999 4444444 888 77 66 2222222222222222222222222222 1 0 0000 5 6 6 000 222 6 4444 6 00 6 22 00 1 3 44 99999999 6 7 99 3 1 111111111 999 6 99 1 888888 1 0 0000 222 3 111 4444444444444 44444444 5 1 3 3333333 6 6 0 1 777777777 1 6 99 3333 11111 6 1 111 33333 3 66 777 4 55 777 4 4 00000 1111 666 55 99999 33333333333333333 3 3 44 3 3 3
lowQualScore : .... . . . . . . .............. . . ..... . . .. . . ..................... ................................................... .. . .. . . . .. . .......................................................................................................................................................................................................... . .............. . ...... . ..... ... .... ...................... ....... ... .. .. ............................ . . .... . . . ... ... . .... . .. . .. .. . . .. ........ . . .. . . ......... ... . .. . ...... . . .... ... . ... ............. ........ . . . ....... . . . . ......... . . .. .... ..... . . ... ..... . .. ... . .. ... . . ..... .... ... .. ..... ................. . . .. . . .
lowQualScore : 3333 0 8 8 0 0 0 88888888888888 6 0 22222 8 0 66 7 7 555555555555555555555 666666666666666666666666666666666666666666666666666 44 7 66 7 7 3 11 0 8888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888 0 22222222222222 4 111111 1 33333 444 9999 5555555555555555555555 4444444 666 00 99 8888888888888888888888888888 8 4 6666 0 7 7 000 555 7 2222 7 88 7 77 77 0 7 22 33333333 7 3 22 7 7 777777777 222 7 00 4 222222 0 0 8888 000 2 888 3333333333333 22222222 7 0 3 5555555 7 7 7 0 333333333 0 7 22 5555 77777 7 0 777 55555 7 00 000 0 55 000 0 0 00000 4444 444 00 11111 33333333333333333 3 3 66 3 6 6
consensus : ACATGTGATATGTACA----GACTGTACAAAAA-AATGTACACTTTTTCAA-TTGAA-TTCACGCTGTA---TGTACAGACTGTACACCAA-AATTCAC--G--CTAAATGAT-AA-TTGTGCAAATCCTTTAAATTCA-GT-CTT---TAG-A----A--------CAGCTGTTTTGATTACGCAA---------TCAC--------A-----TTTCT-GTACT------------GTGGGA-CTTCGACATGCT-TG--ATA-GAT-CACGGACAAAAGGTGTG-TCCACNACG-G--G--TCAG--AAGTGGNTCGAA-----------CA-ATTCCAT--TGATAATT--A-CCAA--CCCTGCTAAC--TGACG--TTCTTTTCAATTT----------GA---TGTT--------TNN----A----T-T-----TAA--CAG-----G-ATA--------CAACGTGAAAT---CAAA---------ATCACTAGGCTGTGTAT-AGG----CATCGTAATCAT-GAGG------ATAAAGA--AGGCCAA-T-TTCCTA-NA-AAGC-----AA--TCTT--TA-----TGAC---T---TT--GAAA-ACA--TTTTAA-----A-----A----------------TTTTCAAA----TG-CTTT-GTAA-GAATAAT-TAATAAAA-A-TC-TAT--G-T-AAT-TTT-AATTNTAAGTTTNAGTGTGTCACC-----A--AA-TGTGATCACCCGA--ATTTCCTCTAATTTT--CT---A-ATCGCAAAT-GCAA-GGTAT-G----TATGGA-AATT---AGGAATGTATGAAGTATTTAAAGGTC-CA---CAT--A-ACAAT--------CAAATCATGGAAATT-GT-GC-AA-CATTT-CTCGGCNT------A--ATACTTTTA-TGGACATAT--GAAAC-A--TTTTAT----TA-TTGATAT---TTG-T--GCACAGATTTN-GTACCACA---TTTT-GC--AA---ACT-TGTGTACA-GATTTT-----TCACTCAA----AAT---CACG--C-----TTTTTCAAAGGCATT-----------------GTACAG-ATT-T--GGGGTTGAAA-AATTA-TCACA-TGTATGC
Reference ( family-1524 ) : ACATGTGATATGTACA----GACTGTACAAAAA-AATGTACACTTTTTCAA-TTGAA-TTCACGCTGCA---TGTACAGACTGTACACCAA-AATTCAC--G--CTAAATGAT-AA-TTGTGCAAATCCTTTAAATTCA-GT-CTT---TAG-A----A--------CAGCTGTTTTGATTACGCAA---------TCAC--------A-----TTTCT-GTACT------------GTGGGA-CTTCGACATGCT-TG--ATA-GAT-CACGGACAAAAGGTGTG-TCCACAACG-G--G--TCAG--AAGTGGNTCGAA-----------CA-ATTCCAT--TGATAATT--AACCAA--CCCTGCTAAC--TGACG--TTCTTTTCAATTT----------GA---TGTT--------TNN----A----T-T-----TAA--CAG-----G-ATA--------CAACGTGAAAT---CAAA---------ATCACTAGGCTGTGTAT-AGG----CATCGTAATCAT-GAGGT----AATAAAGA--AGGCCAA-T-TTCCTA-NA-AAGC-----AA--TCTT--TA-----TGAC---T---TT--GAAA-ACA--TTTTAA-----A-----A----------------TTTTTAAA----TG-CTTT-GTAA-GAATAAT-TAATAAAA-A-TC-TAT--G-T-AAT-TTT-AATTNTAAGTTTNAGTGTGTCACC-----A--AA-TGTGATCACCCGA--ATTTCCTCTAATTTT--CT---A-ATCGCAAAT-GCA--GGTAT-G----TATGGA-AATT---AGGAATGTATGAAGTATTTAAAGGTCTCA---CAT--A-ACAAT--------CAAATCATGGAAATT-GT-GN-AA-CATTT-CTCGGCNT------A--ATACTTTTA-TGGACATAT--GAAAC-A--TTTTAN----TA-TTGATAT---TTG-T--GCACAGATTTN-GTACCACA---TTTT-GC--AA---ACT-TGTGTACA-GATTTT-----TCACTCAA----AAT---CACG--C-----TTTTTCAAAGGCATT-----------------GTACAG-ATT-T--GGGGTTGAAA-AATTA-TCACA-TGTATGC
gi|1 : ACATGTGATATGTACA----GACTGTACAAAAA-AATGTACACTTTCTTAA-TGGAA-TTCACGCTGTAAAGTGTAAAGACTGTACACAAA-AATTCAC--G--CTAAATGAT-AAATTGTGCAAATCCTTTAAATTCA-GC-CTT---GAG-A----A--------CAGCTGTTTTGATTATGCAA---------TC-C--------A-----TTTCT-GTACT------------GTGGGA-CTTCGATATGCT-TG--ATA-GAT-CACGGACAAAAGGTGTG-TCCACAACA-G--G--TCAATTAAGTGGATTGAA-----------CCTATTCCAT--TAATAATT--A-CCAA-----TGATACC--TGACA--CCTTTTGCA---------------------------------------------------TAA--AAG-----G-ATA--------CAA-AT--AAT---TAAA----------TCACTAGGCTGTGTAT-GGA----CATTGTAGTCAT-GAGGTTGAAAATAAAAACCAAATCAA-T-TTCCTA-GA-AAGC-----AA--CCTT--TA-----CGAC---T---TT--GAAA-ACA--TTTCAA-----A-----A----------------CCTTTAAA----TGGCTTT-GTAA-GAATAAT-TAATAAAA-A-TC-TAT--G-TTAAC-TTT-AATTTTAAGTTTTAGTGTGTCACC-----A--AA-TGTGATCATCCGA--ATTTCCTCTAACTTT--CA---A-ATCGAAAAT-GCAA-GGTAT-G----TATGAA-AATT---AGGAGTG-ATGAAGTATTTAAAGGTC--A---CAT--ATACAAT--------CAAATTATGGAAATT-GT-GCCAA-CATTT-CTCAGCTT------A--ATACTTTTA-TAGACATAT--GAAAC-A--TTTTATACGGTAATTGATAT---TTG-TCTGCATAGATTTA-GTCTCAGGGTTTTTT-GC--AA---ACT-TGTGTACA-GATTTT-----TCACTCAA----AAT---CACG--C-----TTTTTCAAAGGCATT-----------------GTACAG-ATT-T--GGGGTTGAAA-AATTA-TCACA-TGTATGC
gi|10 : TGACATGTACA----GACTGTACAAAAATAAAGT-CACTTTTTCAA-TTGAA-ATCACATTTTC---TG------CTGTACATCAATAATTCACCAGACCTAAATGAT-AA--TGTGCAAATCCTTTAAATTCATGTCCTT---TAGAA----A--------CAGCTGTTTTGATTATGCAA---------TCCC--------AT----TTTCTAATACCTGACAGTAAAAGGTGGGA--TTTGATATGCTCTGA-ATATAAT-CATGGATAAAAGGTGTG-TCCAC
gi|11 : ACTTTTA-TGTACATAT--TAAAC-ACATTTTGT----GA-TTGATAT---TT--T--GTACAGATTTT-GTACCACA---TTTTTGC--AA---ACT-TGTGTATA-GATTTT-----TGACTCAATTATAAT---CACA--C-----CTTTATAAAGGCATT-----------------GTACAG-GTT-T--GTGCTTG-AA-AATTA-TCACA-TGTA
gi|12 : tcaaatgattaaaaactacacaaaatgaaaacggcGTAC-CTTTTTCAAATTGAG-TTCACG----A---TGTACAGATTGTACACCAA-AACACAC--G--CT------------TGTGCAAATCCTTTAAATTCA-GT-CTT---TAG-A----A--------CAGCTGTTTTGATTACGCAA---------TC-C--------A-----TT-------------------------GG-CTTTGATATGCT-TG--ATA-GAT-CACGGATAAAAGGCGTG-TCCACAAC---------------AGTGGTTTGAA-----------CACATTCCAT--TGATAAT
gi|14 : ACATGTGATAAGTACATGCAGACTGTACAAAAA-AATGCACACTTTTTCAA-CTTACTTTCACGCTGCA------AC-GCCTGTACACCAA-AATTCAC--A--CAAAATGAT-AATTTTTGCAAATCCATTAAATTCA-GT-CT--------A----A--------CAGCTGTTCTTATTATGCAA---------CC-C--------A-----TT
gi|15 : AAAGGTC--A---CAT--ATACAAT--------CA---CAT------T-GT-GC-AAACATTT-CTCAGCTT------A--A
gi|15 : AGATTTA-GTACCACA---TTTT-GC--AA---ACT-TGTGTACA-GATTTT-----TCACTCAA----AAT---CACG--C-----TTTTTCAAAGGCATT-----------------GTACAG-ATT-T--GGGGTTGAAA-AATTA-TCACA-TGTATGgatttagtaccacattttgcaaacttgtgtacagatttttcactcaaaatcacgctttttcaaaggcattgtacagatttggggttgaaaaattatcacatgtatgt
gi|16 : aaaggtcacatatacaatcacattgtgcaaacatttctcagcttaT--TA-----TGAC---T---TTTTGAAA------TCTTAA----------------------------TTTTCATA----TG-GTTT-ATAA-GAATAAT-TAACGAAA-A-TTGTATGAG-T-AA--TTT-AATCATAAG-TTCATTGTGCCTCC-----A--AATTGTGATAACCCGA--ATTTCTTCTCATCTTTACT---A-TTCGCAAAT-Gt
gi|17 : CA---TTAT-GT--AATAGACT-TGTGTACA-GATTTT-----TCACTCAA----AAT---CACG--C-----TTTTATAAAGGCATTTATAAGCGCATTGTACAGTACAG-CTT-T--GGGGTTCAAA-AATTA-TAACA-TGTAT
gi|18 : ---TTTT-G---AA---ACT-TGTGCACA-GATGTT-----TC-TTC------ACT---CACG--CAATGGTTTTTTAAGTTCATG-----------------GCTCAG-ATTCT--GGGGTTGAAATAATTATTCAAACTGTATG
gi|19 : gggttatgatATTAG-GTATCACC---TATT-GCCAAA---ACTATGT-TACA-GATGTTATCAATTATTAAA----AATACTTACGGCC-----TTTGTAAAAGCCATT-----------------GTACAGAATC-T--GCAGTTGAAA-AAaga
gi|2 : CTATAAATTCA-GT-TTT---TAG-ACACTG--------CAGCTGTTTTGATTACGCAAAACTCCAGATCAC--------AATGCATTTCT-GTACTTGTAC-------GTGGGAACTTCGATATGCT-GG--ATC-GATTCA-GGACAA--GGTGTGGTCCACAACA-GC-G--TCAATTAAGTGGTTTGAA-----------C------------------------CA------TGC-AAC--TGACA--C-CTTTGCA-TTA----------GA---TGTT--------TGTTCAAA----TAT-----TAA--CAG-----GGATA--------TAACATAAAAT---TAAA---------ATCTCTAGGCTGTCTGT-A--------------TCAT-GAGGTTAAAAATAAAAAC-AGACCAAAT-TTCCTA-GA-AAGC-----AAACTTTT--TA-----TGAC---T---TT--GAAA-ACA--TTTAAACCTT-A-----A----------------TATTAAAA----TG-CTTTCGTAA-GAATAAT--AATAAAA-AATC-TAT--GAT-AAC-TTT-AATTT--AGTTTACGTGCGT-ACCCGGTGA--AA-TGTGATCATCCGA--ATTTCCTCTAAT--------------CGAAAATTGCA--GGTATTG----CAAAGA-AATT---AGGAATG-ATGAAGTATT-AAAGGTC--A---CAT--A-ACA-T--------CAAATTATGGAAATTTAT-GC-AA-CATTTTCTCAGCTTCCGGTTA--AT--CTTTA-TAGACATAT--GAAAC-A--TTTTA-----TA-ATGATAT---TCGCT--GCATAGATTTA-GTACCACA---TTTT-GC--AA---ATT-TGTGTACAGGATTTT-----TCACTCAAT---AAT---CAAG--C-----TTTTTCAAAGGCATT-----------------GAACAG-CTT-TCGGGGGTTGAAA-ACTTA-TCACA-
gi|20 : aTGTACAAAAA-AATGTACACTTTTTCAA-TAGAA-TTCACG----A---TGTACAGACTGTACACCAA-AATTCAC--G--CTAAATGATAAA-TTGAGCAAATCCTTTAAAtgt
gi|21 : AA----AAT---CACG--C-----TTTTTCAAAGGCATT-----------------GTACAG-ATT-T--AGGGTTGAAA-ATTTA-TCACA-TGTATGg
gi|22 : TTCAAAGGCATT-----------------GTACAG-CTT-T--GGGGTTAAAA-AATTA-TCACA-TGTAT
gi|3 : AA---------TCAC--------A-----TGTAT-GTACT-----------------A-CT---ACATGCT-GGGCATA--AT-CACAGACAAAAAGTGC--TCCACCATT-GTTG--TCAG--ATATGAATAGAAGCAAGACTAGGTA-ACTCCATACTAA--ATT--TATTAA--TCCTGC-AACATTGA-G--TTCTTTTTCATTTTTATTAATAAAA---TGTT--------TTC----A----T-T-----AAAGTCAGTGAACA-AAA--------CAAAGCGGAGT---CAAAGAGATGATTATCACTGGGTCATAC-T-AGGTTAGCATCTTAATTATTGAGG------ATAAGGG--AGGCCAA---TTCCTATCA-AAACCCATTAA--TACT--TACCCTCTAACGCTT---TT--TAAA-CCA----TCAATT---A-----A----------------TTTTCAAA----TG-
gi|4 : tttcctaccgccgaaccgaccatgactcaaaaaccctcgacctggatttttttttttttttaaatccgaataaacatctttaatatgttgcagaatcagaaaaacattccaatttgcagccattttttttaggtctataaaatcagtgttatacagttataattcaatacaatttttaagtccaatgtgtgttgaattgcgtaacacttgactagggtttaacctTTTTGATTGCGTAACT-------TGACTAGG----G-----TTTCC-TAACT------------ATGGGA-CTTCGACATGCT-TG--GCA-GAT-CGCGGACAAAAG-TAT--TCCACCATTTG--G--TCAG--AAATAAGTCAAA-----------CAGATGGTAT---GTTAATTTAAGCCAAGCCCCTGCTAAC--TGATG--TTCTTTTCAATTT----------GA---TGTT--------TTC----A----T-T-----AAA--T----------TA--------CAG-GTGAA-----CAAA---------A-CA-TATGAT---TATCAGG----CATCGTAATTAT-GAGG------AT-AAGG--AGGCCAA-T-TTCCTA-CA-AATC-----A-----TT--TA-----TTAC---TTCCTT----AC-GCT--TTTTAAATCTTA-----A----------------TTTTCAAA----TG-
gi|5 : tgtaatgcattaggccaaaaaaaaaaaatatgtctgtttcctgctgcccgaccgaccaggactcaaaacccgacctggatttttttttttttttttttaaatccgaataacatttaaaatgttgacaaatccaaagagcattccaatttgcagattttatggctatataaattcagtctaacagttaattcactacaatttaaggccaatgtTAAAT-CA-GT-CTTCACTAC-A----ATTAAAGTCCAG-TGTGTTGATTGCGTAA---------CCACTTTCAAATAGGGT-TTTCT-A-ACT------------ATGGGA-ATTCGACATGCT-TG--GCA-GAT-CACGGACGAAAG-TAC--TCCGCCATGTG--GACTCAG--ACATG---C--------------CA-AGCC--T--TGA--ATT--A-TTAA--CCCTGCTAAT--TGATGGTTTTTTTTCATTTT----------GA---TGTTGTTTTCAGTAA----A----T-TATGGGTAAA-CAA-----A-ATAAAAGCAGTCAACGTATAATTGTCAAA---------AT-ACAAGGTT-----T-GGG----CATCGTAATTAT-GAGG------ATAA-GA--AGGCCAA-T-TTCCTT-CA-AAGC-----A
gi|6 : gccaaaaaaatataagtctgtttcctgctgcccgaccgacctggactcaaaacccccgacctggatttttaaaaaaaaatttctcttgttttaaaaattttgagtaacatttaaaatgttggcaaatcaaggaattcatatctatataTTTGAATTA----------GAATTTATT--------TCA----AATTAT-T-----TAA----A-----G-ATA---------AACA--AAAT---GCAG---------GTGGTTTGGCTGTATTTGAGA----CATAGCAATTAA-GAGG------ATAAA-A--AGGTCAA-TATTC----------------AA------------------------------GAAA-ACA--TTTT------------------------------TCATTA---------TTTT-G--A-AAATAGT-T--TTAAA-A-TC-T------T-ATT-TTTGAATGTTATGTTGGAATAATTAATC-----A--AA----AATC----GATGATCTCTTCTACTTGT--CT---TTATTG---AT--------CAT--------TAGA-AATTTTTAGATAGGTA--AAG------AAGGTCTCA----AC--A-ACAAT--------CAAATCATGGAAATT----------------CTCGGCAT------C--ATAATTTAA-TGGACATAT--GCAACCA--TTTTAT----GA-TTGATAT---TT--T--GTACAGATTTT-GTACCACA---TTTT-GT--AA---ACT-TGTGTACA-GATTAT-----TCACTAAA----AAT---CACA--C-----CTTTGCAAAG----T-----------------GTACAG-ATT-T--GTGGTTGAAA-AATAA-T--CA-TGTATGcaatttcttactt
gi|7 : aA-ACACTTTTTAA-----ATCTTAA----------------TTTTCAAAATAATG-TATT-GTTA-AAATAAT-TGATAAAACA-CC-TAT--T-T-CAT-TTT-AACTGCAAGTT-GATTATGTCACC-----G--AA-TATAATCACCCGA--ATTTCCTCTAATTTT--TTTTTA-ATCGCT--T-GCA--AATAT-GCCAGTTTGGACAAT------GAATGT-TGAATTA---AAAAATAGCAATGTATGAA-ACTATTCTGAGACCACAGCATAGATCTC-GT-GG-AA-TATTT--TCAGCAT------ATTATATTTATACTAAACGTAT--GACACCA--TTTTGT----TA-TCAATGTACTTTG-T--GCA--GATTTTTGTACCATA---TTTA-GC--AA---ATT-TGCATGCA-TATTTT-----TCACTCAA----AAT---CACA--C-----TTTTTTTAAGGCCTC-----------------GTACAA-ATT-T--AAGGTTG-AA-AATTA-TCACA-TGTta
gi|8 : ATATAAAGGTCTC----CAC--A-ACAAT--------CAGATCATGGAATTT-GTTGA-AA-TATTT-CTTGGCAT------C--ATACTTTCA-TGGACATATTAAAAAC-A--TTTTAA----TA-TT--------TTG-T----ACAGATTTT-GTACCACA---TTTT-GC--AA---ACT-TGTGTACA-GATTTT-----TCATTTAA----AAT---CACA--C-----CGTTTTAAAGGTATT-----------------GCACAG-ATT-T--GTGGTTGAAA-AATTA-TCAC---GTATGCt
gi|9 : gttatgttggaataattgattaaatctttattcGTAT-AGT----TATCATAATCATAGAGGC------TGGACA--AGACCAA-T-TTACCA-AATAAGA-----GA--TCTTATTA-----TGAC---T---TT--GAAATATA--TTTTAA-----A-----AGCTTGAGAAAAAATTATTTTTAAA----TG-CTTT-GTAAAGAGTAATATGATAAAA----T-TAT--G-T-AATATTT-AGTTGTAAGTTT-AGT-TG-CAAC-----AGCAA-TGTGATC-CGCGA--ATTTC-TCTAATTTT--CA---T-ATCGCAAAT-GCAAGGATAT-A----TATGat
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|13 ): CATTCATCCTAGAAAAACACTGAGGAAATTACGTATTTGTACTTCGCATAAGGCCAAACCAAAAAAAAAAAGTCTGTTTCCTGCTGCCCGGCCCACCTTGATGCCTGGGATTTTTTTTTTTTTTTTTTTTTGGGTCTTAAAAATTCCGAATATTAAACATTAAATAATTGATGAATC
Alignments
lowQualScore : 1111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 2222 1 33333333333333 11111 22 333333333333333333333 888888888888888888888888888888888888888888888888888 11 11 4444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444 22222222222222 1 333333 1111 2222222222222222222222 1111111 7777777777777777777777777777 1111 111 111 1111 11 11 11111111 5555555555555555555555555555555555555555555555555555555 111 1 111111 11 1 1111111 222222222 1111 3333333 111 333 11111 1111 22222222222222222
lowQualScore : 8888 0 0 0 8 1 8 55555555555555 0 8 55555 0 8 11 6 6 333333333333333333333 999999999999999999999999999999999999999999999999999 66 5 33 5 5 77 1 4444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444 1 66666666666666 1 222222 7 4444 999 8888 9999999999999999999999 4444444 888 77 66 2222222222222222222222222222 0000 5 6 6 000 222 6 4444 6 00 6 22 00 1 3 44 99999999 6 7 99 3 1 1111111111111111111111111111111111111111111111111111111 777 0 5 3 444444 66 4 3 7 4 2 3 2222222 6 6 0 1 777777777 1 6 99 3333 1111111 111 000 3 66 777 4 55 777 4 4 00000 1111 666 55 99999 33333333333333333 3 3 44 3 3 3
lowQualScore : .... . . . . . . .............. . . ..... . . .. . . ..................... ................................................... .. . .. . . .. . ............................................................................................................................................................................................................. . .............. . ...... . .... ... .... ...................... ....... ... .. .. ............................ .... . . . ... ... . .... . .. . .. .. . . .. ........ . . .. . . ....................................................... ... . . . ...... .. . . . . . . ....... . . . . ......... . . .. .... ....... ... ... . .. ... . .. ... . . ..... .... ... .. ..... ................. . . .. . . .
lowQualScore : 3333 0 8 8 0 0 0 00000000000000 6 0 22222 8 0 66 7 7 555555555555555555555 666666666666666666666666666666666666666666666666666 44 7 66 7 7 11 0 3333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333 0 22222222222222 4 999999 1 1111 444 9999 5555555555555555555555 4444444 666 00 99 8888888888888888888888888888 6666 0 7 7 000 555 7 2222 7 88 7 77 77 0 7 22 33333333 7 3 22 7 7 5555555555555555555555555555555555555555555555555555555 555 2 5 2 444444 00 2 3 3 2 5 3 7777777 7 7 7 0 333333333 0 7 22 5555 2222222 777 888 7 00 000 0 55 000 0 0 00000 4444 444 00 11111 33333333333333333 3 3 66 3 6 6
consensus : ACATGTGATATGTACA----GACTGTACAAAAA-AATGTACACTTTTTCAA-TTGAA-TTCACGCTGTA---TGTACAGACTGTACACCAA-AATTCAC--G--CTAAATGAT-AA-TTGTGCAAATCCTTTAAATTCA-GT-CTT---TAG-A----A--------CAGCTGTTTTGATTACGCAA---------TCAC--------A-----TTTCT-GTACT------------GTGGGA-CTTCGACATGCT-TG--ATA-GAT-CACGGACAAAAGGTGTG-TCCACNA-CG-G--G--TCAG--AAGTGGNTCGAA-----------CA-ATTCCATTGA-TAA--TT---ACCAA--CCCTGCTAAC--TGACG--TTCTTTTCAATTT----------GA---TGTT--------TNN----A----T-T-----TAA--CAG-----G-ATA--------CAACGTGAAAT---CAAA---------ATCACTAGGCTGTGTAT-AGG----CATCGTAATCAT-GAGG------ATAAAGA--AGGCCAA-T-TTCCTA-NA-AAGC-----AA--TCTT--TA-----TGAC---T---TT--GAAA-ACA--TTTTAA-----A-----A----------------TTTTCAAA----TG-CTTT-GTAA-GAATAAT-TAATAAAA-A-TC-TAT--G-T-AAT-TTT-AATTNTAAGTTTNAGTGTGTCACC-----A--AA-TGTGATCACCCGA--ATTTCCTCTAATTTT--CT---A-ATCGC-----AA-AT-GCAAGG-T------AT-GTATG--------GAAATT---AGGAATGTATGAAG-TATTTAAAGGTC-CACATA-ACAATCAAATCATGGAAATT-GT-G-CAA-CATTT-CTCGGCNT------A--ATACTTTTA-TGGACATAT--GAAAC-A--TTTTAT----T-ATTGATAT---TTG--TGCACAGATTTN-GTACCACA---TTTT-GC--AA---ACT-TGTGTACA-GATTTT-----TCACTCAA----AAT---CACG--C-----TTTTTCAAAGGCATT-----------------GTACAG-ATT-T--GGGGTTGAAA-AATTA-TCACA-TGTATGC
Reference ( family-1524 ) : ACATGTGATATGTACA----GACTGTACAAAAA-AATGTACACTTTTTCAA-TTGAA-TTCACGCTGTA---TGTACAGACTGTACACCAA-AATTCAC--G--CTAAATGAT-AA-TTGTGCAAATCCTTTAAATTCA-GT-CTT---TAG-A----A--------CAGCTGTTTTGATTACGCAA---------TCAC--------A-----TTTCT-GTACT------------GTGGGA-CTTCGACATGCT-TG--ATA-GAT-CACGGACAAAAGGTGTG-TCCACNA-CG-G--G--TCAG--AAGTGGNTCGAA-----------CA-ATTCCATTGA-TAA--TT---ACCAA--CCCTGCTAAC--TGACG--TTCTTTTCAATTT----------GA---TGTT--------TNN----A----T-T-----TAA--CAG-----G-ATA--------CAACGTGAAAT---CAAA---------ATCACTAGGCTGTGTAT-AGG----CATCGTAATCAT-GAGG------ATAAAGA--AGGCCAA-T-TTCCTA-NA-AAGC-----AA--TCTT--TA-----TGAC---T---TT--GAAA-ACA--TTTTAA-----A-----A----------------TTTTCAAA----TG-CTTT-GTAA-GAATAAT-TAATAAAA-A-TC-TAT--G-T-AAT-TTT-AATTNTAAGTTTNAGTGTGTCACC-----A--AA-TGTGATCACCCGA--ATTTCCTCTAATTTT--CT---A-ATCGC-----AA-AT-GCAAGG-T------AT-GTATG--------GAAATT---AGGAATGTATGAAG-TATTTAAAGGTC-CACATA-ACAATCAAATCATGGAAATT-GT-G-CAA-CATTT-CTCGGCNT------A--ATACTTTTA-TGGACATAT--GAAAC-A--TTTTAT----T-ATTGATAT---TTG--TGCACAGATTTN-GTACCACA---TTTT-GC--AA---ACT-TGTGTACA-GATTTT-----TCACTCAA----AAT---CACG--C-----TTTTTCAAAGGCATT-----------------GTACAG-ATT-T--GGGGTTGAAA-AATTA-TCACA-TGTATGC
gi|1 : ACATGTGATATGTACA----GACTGTACAAAAA-AATGTACACTTTCTTAA-TGGAA-TTCACGCTGTAAAGTGTAAAGACTGTACACAAA-AATTCAC--G--CTAAATGAT-AAATTGTGCAAATCCTTTAAATTCA-GC-CTT---GAG-A----A--------CAGCTGTTTTGATTATGCAA---------TC-C--------A-----TTTCT-GTACT------------GTGGGA-CTTCGATATGCT-TG--ATA-GAT-CACGGACAAAAGGTGTG-TCCACAA-CA-G--G--TCAATTAAGTGGATTGAA-----------CCTATTCCATTAA-TAA--TT---ACCAA-----TGATACC--TGACA--CCTTTTGCA---------------------------------------------------TAA--AAG-----G-ATA--------CAA-AT--AAT---TAAA----------TCACTAGGCTGTGTAT-GGA----CATTGTAGTCAT-GAGGTTGAAAATAAAAACCAAATCAA-T-TTCCTA-GA-AAGC-----AA--CCTT--TA-----CGAC---T---TT--GAAA-ACA--TTTCAA-----A-----A----------------CCTTTAAA----TGGCTTT-GTAA-GAATAAT-TAATAAAA-A-TC-TAT--G-TTAAC-TTT-AATTTTAAGTTTTAGTGTGTCACC-----A--AA-TGTGATCATCCGA--ATTTCCTCTAACTTT--CA---A-ATCGA-----AA-AT-GCAAGG-T------AT-GTATG--------AAAATT---AGGAGTG-ATGAAG-TATTTAAAGGT--CACATATACAATCAAATTATGGAAATT-GT-GCCAA-CATTT-CTCAGCTT------A--ATACTTTTA-TAGACATAT--GAAAC-A--TTTTATACGGTAATTGATAT---TTGTCTGCATAGATTTA-GTCTCAGGGTTTTTT-GC--AA---ACT-TGTGTACA-GATTTT-----TCACTCAA----AAT---CACG--C-----TTTTTCAAAGGCATT-----------------GTACAG-ATT-T--GGGGTTGAAA-AATTA-TCACA-TGTATGC
gi|10 : TGACATGTACA----GACTGTACAAAAATAAAGT-CACTTTTTCAA-TTGAA-ATCACATTTTC---TG------CTGTACATCAATAATTCACCAGACCTAAATGAT-AA--TGTGCAAATCCTTTAAATTCATGTCCTT---TAGAA----A--------CAGCTGTTTTGATTATGCAA---------TCCC--------AT----TTTCTAATACCTGACAGTAAAAGGTGGGA--TTTGATATGCTCTGA-ATATAAT-CATGGATAAAAGGTGTG-TCCAC
gi|11 : ACTTTTA-TGTACATAT--TAAAC-ACATTTTGT----G-ATTGATAT---TT---TGTACAGATTTT-GTACCACA---TTTTTGC--AA---ACT-TGTGTATA-GATTTT-----TGACTCAATTATAAT---CACA--C-----CTTTATAAAGGCATT-----------------GTACAG-GTT-T--GTGCTTG-AA-AATTA-TCACA-TGTA
gi|12 : tcaaatgattaaaaactacacaaaatgaaaacggcGTAC-CTTTTTCAAATTGAG-TTCACG----A---TGTACAGATTGTACACCAA-AACACAC--G--CT------------TGTGCAAATCCTTTAAATTCA-GT-CTT---TAG-A----A--------CAGCTGTTTTGATTACGCAA---------TC-C--------A-----TT-------------------------GG-CTTTGATATGCT-TG--ATA-GAT-CACGGATAAAAGGCGTG-TCCACAA-C---------------AGTGGTTTGAA-----------CACATTCCATTGA-TAA--T
gi|14 : ACATGTGATAAGTACATGCAGACTGTACAAAAA-AATGCACACTTTTTCAA-CTTACTTTCACGCTGCA------AC-GCCTGTACACCAA-AATTCAC--A--CAAAATGAT-AATTTTTGCAAATCCATTAAATTCA-GT-CT--------A----A--------CAGCTGTTCTTATTATGCAA---------CC-C--------A-----TT
gi|15 : AAAGGTC--ACATATACAATCA---CAT------T-GT-G-CAAACATTT-CTCAGCTT------A--A
gi|15 : AGATTTA-GTACCACA---TTTT-GC--AA---ACT-TGTGTACA-GATTTT-----TCACTCAA----AAT---CACG--C-----TTTTTCAAAGGCATT-----------------GTACAG-ATT-T--GGGGTTGAAA-AATTA-TCACA-TGTATGgatttagtaccacattttgcaaacttgtgtacagatttttcactcaaaatcacgctttttcaaaggcattgtacagatttggggttgaaaaattatcacatgtatgt
gi|16 : aaaggtcacatatacaatcacattgtgcaaacatttctcagcttaT--TA-----TGAC---T---TTTTGAAA------TCTTAA----------------------------TTTTCATA----TG-GTTT-ATAA-GAATAAT-TAACGAAA-A-TTGTATGAG-T-AA--TTT-AATCATAAG-TTCATTGTGCCTCC-----A--AATTGTGATAACCCGA--ATTTCTTCTCATCTTTACT---A-TTCGC-----AA-AT-Gt
gi|17 : CA---TTAT-GT--AATAGACT-TGTGTACA-GATTTT-----TCACTCAA----AAT---CACG--C-----TTTTATAAAGGCATTTATAAGCGCATTGTACAGTACAG-CTT-T--GGGGTTCAAA-AATTA-TAACA-TGTAT
gi|18 : ---TTTT-G---AA---ACT-TGTGCACA-GATGTT-----TC-TTC------ACT---CACG--CAATGGTTTTTTAAGTTCATG-----------------GCTCAG-ATTCT--GGGGTTGAAATAATTATTCAAACTGTATG
gi|19 : gggttatgatATTAG-GTATCACC---TATT-GCCAAA---ACTATGT-TACA-GATGTTATCAATTATTAAA----AATACTTACGGCC-----TTTGTAAAAGCCATT-----------------GTACAGAATC-T--GCAGTTGAAA-AAaga
gi|2 : CTATAAATTCA-GT-TTT---TAG-ACACTG--------CAGCTGTTTTGATTACGCAAAACTCCAGATCAC--------AATGCATTTCT-GTACTTGTAC-------GTGGGAACTTCGATATGCT-GG--ATC-GATTCA-GGACAA--GGTGTGGTCCACAA-CA-GC-G--TCAATTAAGTGGTTTGAA-----------C-------------------------CA------TGC-AAC--TGACA--C-CTTTGCA-TTA----------GA---TGTT--------TGTTCAAA----TAT-----TAA--CAG-----GGATA--------TAACATAAAAT---TAAA---------ATCTCTAGGCTGTCTGT-A--------------TCAT-GAGGTTAAAAATAAAAAC-AGACCAAAT-TTCCTA-GA-AAGC-----AAACTTTT--TA-----TGAC---T---TT--GAAA-ACA--TTTAAACCTT-A-----A----------------TATTAAAA----TG-CTTTCGTAA-GAATAAT--AATAAAA-AATC-TAT--GAT-AAC-TTT-AATTT--AGTTTACGTGCGT-ACCCGGTGA--AA-TGTGATCATCCGA--ATTTCCTCTAAT--------------CGA-----AA-ATTGCA-GG-T------ATTGCAAA--------GAAATT---AGGAATG-ATGAAG-TATT-AAAGGTC--ACATA-ACA-TCAAATTATGGAAATTTAT-G-CAA-CATTTTCTCAGCTTCCGGTTA--AT--CTTTA-TAGACATAT--GAAAC-A--TTTTA-----T-AATGATAT---TCGC-TGCATAGATTTA-GTACCACA---TTTT-GC--AA---ATT-TGTGTACAGGATTTT-----TCACTCAAT---AAT---CAAG--C-----TTTTTCAAAGGCATT-----------------GAACAG-CTT-TCGGGGGTTGAAA-ACTTA-TCACA-
gi|20 : aTGTACAAAAA-AATGTACACTTTTTCAA-TAGAA-TTCACG----A---TGTACAGACTGTACACCAA-AATTCAC--G--CTAAATGATAAA-TTGAGCAAATCCTTTAAAtgt
gi|21 : AA----AAT---CACG--C-----TTTTTCAAAGGCATT-----------------GTACAG-ATT-T--AGGGTTGAAA-ATTTA-TCACA-TGTATGg
gi|22 : TTCAAAGGCATT-----------------GTACAG-CTT-T--GGGGTTAAAA-AATTA-TCACA-TGTAT
gi|3 : AA---------TCAC--------A-----TGTAT-GTACT-----------------A-CT---ACATGCT-GGGCATA--AT-CACAGACAAAAAGTGC--TCCACCA-TT-GTTG--TCAG--ATATGAATAGAAGCAAGACTAGGTA-ACTCCAT--ACTAAATTT---ATTAA--TCCTGC-AACATTGA-G--TTCTTTTTCATTTTTATTAATAAAA---TGTT--------TTC----A----T-T-----AAAGTCAGTGAACA-AAA--------CAAAGCGGAGT---CAAAGAGATGATTATCACTGGGTCATAC-T-AGGTTAGCATCTTAATTATTGAGG------ATAAGGG--AGGCCAA---TTCCTATCA-AAACCCATTAA--TACT--TACCCTCTAACGCTT---TT--TAAA-CCA----TCAATT---A-----A----------------TTTTCAAA----TG-
gi|4 : tttcctaccgccgaaccgaccatgactcaaaaaccctcgacctggatttttttttttttttaaatccgaataaacatctttaatatgttgcagaatcagaaaaacattccaatttgcagccattttttttaggtctataaaatcagtgttatacagttataattcaatacaatttttaagtccaatgtgtgttgaattgcgtaacacttgactagggtttaacctTTTTGATTGCGTAACT-------TGACTAGG----G-----TTTCC-TAACT------------ATGGGA-CTTCGACATGCT-TG--GCA-GAT-CGCGGACAAAA-GTAT--TCCACCATTT-G--G--TCAG--AAATAAGTCAAA-----------CAGATGGTA-TGT-TAA--TTTAAGCCAAGCCCCTGCTAAC--TGATG--TTCTTTTCAATTT----------GA---TGTT--------TTC----A----T-T-----AAA--T----------TA--------CAG-GTGAA-----CAAA---------A-CA-TATGAT---TATCAGG----CATCGTAATTAT-GAGG------AT-AAGG--AGGCCAA-T-TTCCTA-CA-AATC-----A-----TT--TA-----TTAC---TTCCTT----AC-GCT--TTTTAAATCTTA-----A----------------TTTTCAAA----TG-
gi|5 : tgtaatgcattaggccaaaaaaaaaaaatatgtctgtttcctgctgcccgaccgaccaggactcaaaacccgacctggatttttttttttttttttttaaatccgaataacatttaaaatgttgacaaatccaaagagcattccaatttgcagattttatggctatataaattcagtctaacagttaattcactacaatttaaggccaatgtTAAAT-CA-GT-CTTCACTAC-A----ATTAAAGTCCAG-TGTGTTGATTGCGTAA---------CCACTTTCAAATAGGGT-TTTCT-A-ACT------------ATGGGA-ATTCGACATGCT-TG--GCA-GAT-CACGGACGAAAG-TAC--TCCGCCA-TGTG--GACTCAG--ACATG---C--------------CA-AGCC--TTGA---A--TT---ATTAA--CCCTGCTAAT--TGATGGTTTTTTTTCATTTT----------GA---TGTTGTTTTCAGTAA----A----T-TATGGGTAAA-CAA-----A-ATAAAAGCAGTCAACGTATAATTGTCAAA---------AT-ACAAGGTT-----T-GGG----CATCGTAATTAT-GAGG------AT-AAGA--AGGCCAA-T-TTCCTT-CA-AAGC-----A
gi|6 : gccaaaaaaatataagtctgtttcctgctgcccgaccgacctggactcaaaacccccgacctggatttttaaaaaaaaatttctcttgttttaaaaattttgagtaacatttaaaatgttggcaaatcaaggaattcatatctatataTTTGAATTA----------GAATTTATT--------TCA----AATTAT-T-----TAA----A-----G-ATA---------AACA--AAAT---GCAG---------GTGGTTTGGCTGTATTTGAGA----CATAGCAATTAA-GAGG------ATAAA-A--AGGTCAA-TATTC----------------AA------------------------------GAAA-ACA--TTTT---------------------------------TCAT-----TA-TTTT-G--A-AAATAGT-T--TTAAA-A-TC-T------T-ATT-TTTGAATGTTATGTTGGAATAATTAATC-----A--AA----AATC----GATGATCTCTTCTACTTGT--CT---TTATTG---------AT--------C------AT----TA--------GAAATTTTTAGATAGGTA--AAG-------AAGGTCTCA-ACA-ACAATCAAATCATGGAAATT----------------CTCGGCAT------C--ATAATTTAA-TGGACATAT--GCAACCA--TTTTAT----G-ATTGATAT---TT---TGTACAGATTTT-GTACCACA---TTTT-GT--AA---ACT-TGTGTACA-GATTAT-----TCACTAAA----AAT---CACA--C-----CTTTGCAAAG----T-----------------GTACAG-ATT-T--GTGGTTGAAA-AATAA-T--CA-TGTATGcaatttcttactt
gi|7 : aA-ACACTTTTTAA-----ATCTTAA----------------TTTTCAAAATAATG-TATT-GTTA-AAATAAT-TGATAAAACA-CC-TAT--T-T-CAT-TTT-AACTGCAAGTT-GATTATGTCACC-----G--AA-TATAATCACCCGA--ATTTCCTCTAATTTT--TTTTTA-ATCGCTTGCAAATAT-GCCAGT-TTGGACAAT-GAATGTTGAATTAAAAAAT---AGCAATGTATGAAACTATTCTGAGA-C-CACA---GCA--TAGATC-------TC-GT-G-GAA-TATTT--TCAGCAT------ATTATATTTATACTAAACGTAT--GACACCA--TTTTGT----T-ATCAATGTACTTTG--TGCA--GATTTTTGTACCATA---TTTA-GC--AA---ATT-TGCATGCA-TATTTT-----TCACTCAA----AAT---CACA--C-----TTTTTTTAAGGCCTC-----------------GTACAA-ATT-T--AAGGTTG-AA-AATTA-TCACA-TGTta
gi|8 : ATATAAAGGTC-TCCACA-ACAATCAGATCATGGAATTT-GTTG-AAA-TATTT-CTTGGCAT------C--ATACTTTCA-TGGACATATTAAAAAC-A--TTTTA-----------ATAT---TT---TGTACAGATTTT-GTACCACA---TTTT-GC--AA---ACT-TGTGTACA-GATTTT-----TCATTTAA----AAT---CACA--C-----CGTTTTAAAGGTATT-----------------GCACAG-ATT-T--GTGGTTGAAA-AATTA-TCAC---GTATGCt
gi|9 : gttatgttggaataattgattaaatctttattcGTAT-AGT----TATCATAATCATAGAGG------CTGGACA--AGACCAA-T-TTACCA-AATAAGA-----GA--TCTTATTA-----TGAC---T---TT--GAAATATA--TTTTAA-----A-----AGCTTGAGAAAAAATTATTTTTAAA----TG-CTTT-GTAAAGAGTAATATGATAAAA----T-TAT--G-T-AATATTT-AGTTGTAAGTTT-AGT-TG-CAAC-----AGCAA-TGTGATC-CGCGA--ATTTC-TCTAATTTT--CA---T-ATCGC-----AA-AT-GCAAGGAT------AT-ATATG--------at
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|13 ): CATTCATCCTAGAAAAACACTGAGGAAATTACGTATTTGTACTTCGCATAAGGCCAAACCAAAAAAAAAAAGTCTGTTTCCTGCTGCCCGGCCCACCTTGATGCCTGGGATTTTTTTTTTTTTTTTTTTTTGGGTCTTAAAAATTCCGAATATTAAACATTAAATAATTGATGAATC
Alignments
lowQualScore : 1111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 2222 1 33333333333333 11111 22 333333333333333333333 888888888888888888888888888888888888888888888888888 11 11 4444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444 22222222222222 1 333333 1111 2222222222222222222222 1111111 7777777777777777777777777777 1111 111 111 1111 11 11 11111111 5555555555555555555555555555555555555555555555555555555 111 1 111111 11 1 1111111 222222222 1111 3333333 111 333 11111 1111 22222222222222222
lowQualScore : 8888 0 0 0 8 1 8 55555555555555 0 8 55555 0 8 11 6 6 333333333333333333333 999999999999999999999999999999999999999999999999999 66 5 33 5 5 77 1 4444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444 1 66666666666666 1 222222 7 4444 999 8888 9999999999999999999999 4444444 888 77 66 2222222222222222222222222222 0000 5 6 6 000 222 6 4444 6 00 6 22 00 1 3 44 99999999 6 7 99 3 1 1111111111111111111111111111111111111111111111111111111 777 0 5 3 444444 66 4 3 7 4 2 3 2222222 6 6 0 1 777777777 1 6 99 3333 1111111 111 000 3 66 777 4 55 777 4 4 00000 1111 666 55 99999 33333333333333333 3 3 44 3 3 3
lowQualScore : .... . . . . . . .............. . . ..... . . .. . . ..................... ................................................... .. . .. . . .. . ............................................................................................................................................................................................................. . .............. . ...... . .... ... .... ...................... ....... ... .. .. ............................ .... . . . ... ... . .... . .. . .. .. . . .. ........ . . .. . . ....................................................... ... . . . ...... .. . . . . . . ....... . . . . ......... . . .. .... ....... ... ... . .. ... . .. ... . . ..... .... ... .. ..... ................. . . .. . . .
lowQualScore : 3333 0 8 8 0 0 0 00000000000000 6 0 22222 8 0 66 7 7 555555555555555555555 666666666666666666666666666666666666666666666666666 44 7 66 7 7 11 0 3333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333 0 22222222222222 4 999999 1 1111 444 9999 5555555555555555555555 4444444 666 00 99 8888888888888888888888888888 6666 0 7 7 000 555 7 2222 7 88 7 77 77 0 7 22 33333333 7 3 22 7 7 5555555555555555555555555555555555555555555555555555555 555 2 5 2 444444 00 2 3 3 2 5 3 7777777 7 7 7 0 333333333 0 7 22 5555 2222222 777 888 7 00 000 0 55 000 0 0 00000 4444 444 00 11111 33333333333333333 3 3 66 3 6 6
consensus : ACATGTGATATGTACA----GACTGTACAAAAA-AATGTACACTTTTTCAA-TTGAA-TTCACGCTGTA---TGTACAGACTGTACACCAA-AATTCAC--G--CTAAATGAT-AA-TTGTGCAAATCCTTTAAATTCA-GT-CTT---TAG-A----A--------CAGCTGTTTTGATTACGCAA---------TCAC--------A-----TTTCT-GTACT------------GTGGGA-CTTCGACATGCT-TG--ATA-GAT-CACGGACAAAAGGTGTG-TCCACNA-CG-G--G--TCAG--AAGTGGNTCGAA-----------CA-ATTCCATTGA-TAA--TT---ACCAA--CCCTGCTAAC--TGACG--TTCTTTTCAATTT----------GA---TGTT--------TNN----A----T-T-----TAA--CAG-----G-ATA--------CAACGTGAAAT---CAAA---------ATCACTAGGCTGTGTAT-AGG----CATCGTAATCAT-GAGG------ATAAAGA--AGGCCAA-T-TTCCTA-NA-AAGC-----AA--TCTT--TA-----TGAC---T---TT--GAAA-ACA--TTTTAA-----A-----A----------------TTTTCAAA----TG-CTTT-GTAA-GAATAAT-TAATAAAA-A-TC-TAT--G-T-AAT-TTT-AATTNTAAGTTTNAGTGTGTCACC-----A--AA-TGTGATCACCCGA--ATTTCCTCTAATTTT--CT---A-ATCGC-----AA-AT-GCAAGG-T------AT-GTATG--------GAAATT---AGGAATGTATGAAG-TATTTAAAGGTC-CACATA-ACAATCAAATCATGGAAATT-GT-G-CAA-CATTT-CTCGGCNT------A--ATACTTTTA-TGGACATAT--GAAAC-A--TTTTAT----T-ATTGATAT---TTG--TGCACAGATTTN-GTACCACA---TTTT-GC--AA---ACT-TGTGTACA-GATTTT-----TCACTCAA----AAT---CACG--C-----TTTTTCAAAGGCATT-----------------GTACAG-ATT-T--GGGGTTGAAA-AATTA-TCACA-TGTATGC
Reference ( family-1524 ) : ACATGTGATATGTACA----GACTGTACAAAAA-AATGTACACTTTTTCAA-TTGAA-TTCACGCTGTA---TGTACAGACTGTACACCAA-AATTCAC--G--CTAAATGAT-AA-TTGTGCAAATCCTTTAAATTCA-GT-CTT---TAG-A----A--------CAGCTGTTTTGATTACGCAA---------TCAC--------A-----TTTCT-GTACT------------GTGGGA-CTTCGACATGCT-TG--ATA-GAT-CACGGACAAAAGGTGTG-TCCACNA-CG-G--G--TCAG--AAGTGGNTCGAA-----------CA-ATTCCATTGA-TAA--TT---ACCAA--CCCTGCTAAC--TGACG--TTCTTTTCAATTT----------GA---TGTT--------TNN----A----T-T-----TAA--CAG-----G-ATA--------CAACGTGAAAT---CAAA---------ATCACTAGGCTGTGTAT-AGG----CATCGTAATCAT-GAGG------ATAAAGA--AGGCCAA-T-TTCCTA-NA-AAGC-----AA--TCTT--TA-----TGAC---T---TT--GAAA-ACA--TTTTAA-----A-----A----------------TTTTCAAA----TG-CTTT-GTAA-GAATAAT-TAATAAAA-A-TC-TAT--G-T-AAT-TTT-AATTNTAAGTTTNAGTGTGTCACC-----A--AA-TGTGATCACCCGA--ATTTCCTCTAATTTT--CT---A-ATCGC-----AA-AT-GCAAGG-T------AT-GTATG--------GAAATT---AGGAATGTATGAAG-TATTTAAAGGTC-CACATA-ACAATCAAATCATGGAAATT-GT-G-CAA-CATTT-CTCGGCNT------A--ATACTTTTA-TGGACATAT--GAAAC-A--TTTTAT----T-ATTGATAT---TTG--TGCACAGATTTN-GTACCACA---TTTT-GC--AA---ACT-TGTGTACA-GATTTT-----TCACTCAA----AAT---CACG--C-----TTTTTCAAAGGCATT-----------------GTACAG-ATT-T--GGGGTTGAAA-AATTA-TCACA-TGTATGC
gi|1 : ACATGTGATATGTACA----GACTGTACAAAAA-AATGTACACTTTCTTAA-TGGAA-TTCACGCTGTAAAGTGTAAAGACTGTACACAAA-AATTCAC--G--CTAAATGAT-AAATTGTGCAAATCCTTTAAATTCA-GC-CTT---GAG-A----A--------CAGCTGTTTTGATTATGCAA---------TC-C--------A-----TTTCT-GTACT------------GTGGGA-CTTCGATATGCT-TG--ATA-GAT-CACGGACAAAAGGTGTG-TCCACAA-CA-G--G--TCAATTAAGTGGATTGAA-----------CCTATTCCATTAA-TAA--TT---ACCAA-----TGATACC--TGACA--CCTTTTGCA---------------------------------------------------TAA--AAG-----G-ATA--------CAA-AT--AAT---TAAA----------TCACTAGGCTGTGTAT-GGA----CATTGTAGTCAT-GAGGTTGAAAATAAAAACCAAATCAA-T-TTCCTA-GA-AAGC-----AA--CCTT--TA-----CGAC---T---TT--GAAA-ACA--TTTCAA-----A-----A----------------CCTTTAAA----TGGCTTT-GTAA-GAATAAT-TAATAAAA-A-TC-TAT--G-TTAAC-TTT-AATTTTAAGTTTTAGTGTGTCACC-----A--AA-TGTGATCATCCGA--ATTTCCTCTAACTTT--CA---A-ATCGA-----AA-AT-GCAAGG-T------AT-GTATG--------AAAATT---AGGAGTG-ATGAAG-TATTTAAAGGT--CACATATACAATCAAATTATGGAAATT-GT-GCCAA-CATTT-CTCAGCTT------A--ATACTTTTA-TAGACATAT--GAAAC-A--TTTTATACGGTAATTGATAT---TTGTCTGCATAGATTTA-GTCTCAGGGTTTTTT-GC--AA---ACT-TGTGTACA-GATTTT-----TCACTCAA----AAT---CACG--C-----TTTTTCAAAGGCATT-----------------GTACAG-ATT-T--GGGGTTGAAA-AATTA-TCACA-TGTATGC
gi|10 : TGACATGTACA----GACTGTACAAAAATAAAGT-CACTTTTTCAA-TTGAA-ATCACATTTTC---TG------CTGTACATCAATAATTCACCAGACCTAAATGAT-AA--TGTGCAAATCCTTTAAATTCATGTCCTT---TAGAA----A--------CAGCTGTTTTGATTATGCAA---------TCCC--------AT----TTTCTAATACCTGACAGTAAAAGGTGGGA--TTTGATATGCTCTGA-ATATAAT-CATGGATAAAAGGTGTG-TCCAC
gi|11 : ACTTTTA-TGTACATAT--TAAAC-ACATTTTGT----G-ATTGATAT---TT---TGTACAGATTTT-GTACCACA---TTTTTGC--AA---ACT-TGTGTATA-GATTTT-----TGACTCAATTATAAT---CACA--C-----CTTTATAAAGGCATT-----------------GTACAG-GTT-T--GTGCTTG-AA-AATTA-TCACA-TGTA
gi|12 : tcaaatgattaaaaactacacaaaatgaaaacggcGTAC-CTTTTTCAAATTGAG-TTCACG----A---TGTACAGATTGTACACCAA-AACACAC--G--CT------------TGTGCAAATCCTTTAAATTCA-GT-CTT---TAG-A----A--------CAGCTGTTTTGATTACGCAA---------TC-C--------A-----TT-------------------------GG-CTTTGATATGCT-TG--ATA-GAT-CACGGATAAAAGGCGTG-TCCACAA-C---------------AGTGGTTTGAA-----------CACATTCCATTGA-TAA--T
gi|14 : ACATGTGATAAGTACATGCAGACTGTACAAAAA-AATGCACACTTTTTCAA-CTTACTTTCACGCTGCA------AC-GCCTGTACACCAA-AATTCAC--A--CAAAATGAT-AATTTTTGCAAATCCATTAAATTCA-GT-CT--------A----A--------CAGCTGTTCTTATTATGCAA---------CC-C--------A-----TT
gi|15 : AAAGGTC--ACATATACAATCA---CAT------T-GT-G-CAAACATTT-CTCAGCTT------A--A
gi|15 : AGATTTA-GTACCACA---TTTT-GC--AA---ACT-TGTGTACA-GATTTT-----TCACTCAA----AAT---CACG--C-----TTTTTCAAAGGCATT-----------------GTACAG-ATT-T--GGGGTTGAAA-AATTA-TCACA-TGTATGgatttagtaccacattttgcaaacttgtgtacagatttttcactcaaaatcacgctttttcaaaggcattgtacagatttggggttgaaaaattatcacatgtatgt
gi|16 : aaaggtcacatatacaatcacattgtgcaaacatttctcagcttaT--TA-----TGAC---T---TTTTGAAA------TCTTAA----------------------------TTTTCATA----TG-GTTT-ATAA-GAATAAT-TAACGAAA-A-TTGTATGAG-T-AA--TTT-AATCATAAG-TTCATTGTGCCTCC-----A--AATTGTGATAACCCGA--ATTTCTTCTCATCTTTACT---A-TTCGC-----AA-AT-Gt
gi|17 : CA---TTAT-GT--AATAGACT-TGTGTACA-GATTTT-----TCACTCAA----AAT---CACG--C-----TTTTATAAAGGCATTTATAAGCGCATTGTACAGTACAG-CTT-T--GGGGTTCAAA-AATTA-TAACA-TGTAT
gi|18 : ---TTTT-G---AA---ACT-TGTGCACA-GATGTT-----TC-TTC------ACT---CACG--CAATGGTTTTTTAAGTTCATG-----------------GCTCAG-ATTCT--GGGGTTGAAATAATTATTCAAACTGTATG
gi|19 : gggttatgatATTAG-GTATCACC---TATT-GCCAAA---ACTATGT-TACA-GATGTTATCAATTATTAAA----AATACTTACGGCC-----TTTGTAAAAGCCATT-----------------GTACAGAATC-T--GCAGTTGAAA-AAaga
gi|2 : CTATAAATTCA-GT-TTT---TAG-ACACTG--------CAGCTGTTTTGATTACGCAAAACTCCAGATCAC--------AATGCATTTCT-GTACTTGTAC-------GTGGGAACTTCGATATGCT-GG--ATC-GATTCA-GGACAA--GGTGTGGTCCACAA-CA-GC-G--TCAATTAAGTGGTTTGAA-----------C-------------------------CA------TGC-AAC--TGACA--C-CTTTGCA-TTA----------GA---TGTT--------TGTTCAAA----TAT-----TAA--CAG-----GGATA--------TAACATAAAAT---TAAA---------ATCTCTAGGCTGTCTGT-A--------------TCAT-GAGGTTAAAAATAAAAAC-AGACCAAAT-TTCCTA-GA-AAGC-----AAACTTTT--TA-----TGAC---T---TT--GAAA-ACA--TTTAAACCTT-A-----A----------------TATTAAAA----TG-CTTTCGTAA-GAATAAT--AATAAAA-AATC-TAT--GAT-AAC-TTT-AATTT--AGTTTACGTGCGT-ACCCGGTGA--AA-TGTGATCATCCGA--ATTTCCTCTAAT--------------CGA-----AA-ATTGCA-GG-T------ATTGCAAA--------GAAATT---AGGAATG-ATGAAG-TATT-AAAGGTC--ACATA-ACA-TCAAATTATGGAAATTTAT-G-CAA-CATTTTCTCAGCTTCCGGTTA--AT--CTTTA-TAGACATAT--GAAAC-A--TTTTA-----T-AATGATAT---TCGC-TGCATAGATTTA-GTACCACA---TTTT-GC--AA---ATT-TGTGTACAGGATTTT-----TCACTCAAT---AAT---CAAG--C-----TTTTTCAAAGGCATT-----------------GAACAG-CTT-TCGGGGGTTGAAA-ACTTA-TCACA-
gi|20 : aTGTACAAAAA-AATGTACACTTTTTCAA-TAGAA-TTCACG----A---TGTACAGACTGTACACCAA-AATTCAC--G--CTAAATGATAAA-TTGAGCAAATCCTTTAAAtgt
gi|21 : AA----AAT---CACG--C-----TTTTTCAAAGGCATT-----------------GTACAG-ATT-T--AGGGTTGAAA-ATTTA-TCACA-TGTATGg
gi|22 : TTCAAAGGCATT-----------------GTACAG-CTT-T--GGGGTTAAAA-AATTA-TCACA-TGTAT
gi|3 : AA---------TCAC--------A-----TGTAT-GTACT-----------------A-CT---ACATGCT-GGGCATA--AT-CACAGACAAAAAGTGC--TCCACCA-TT-GTTG--TCAG--ATATGAATAGAAGCAAGACTAGGTA-ACTCCAT--ACTAAATTT---ATTAA--TCCTGC-AACATTGA-G--TTCTTTTTCATTTTTATTAATAAAA---TGTT--------TTC----A----T-T-----AAAGTCAGTGAACA-AAA--------CAAAGCGGAGT---CAAAGAGATGATTATCACTGGGTCATAC-T-AGGTTAGCATCTTAATTATTGAGG------ATAAGGG--AGGCCAA---TTCCTATCA-AAACCCATTAA--TACT--TACCCTCTAACGCTT---TT--TAAA-CCA----TCAATT---A-----A----------------TTTTCAAA----TG-
gi|4 : tttcctaccgccgaaccgaccatgactcaaaaaccctcgacctggatttttttttttttttaaatccgaataaacatctttaatatgttgcagaatcagaaaaacattccaatttgcagccattttttttaggtctataaaatcagtgttatacagttataattcaatacaatttttaagtccaatgtgtgttgaattgcgtaacacttgactagggtttaacctTTTTGATTGCGTAACT-------TGACTAGG----G-----TTTCC-TAACT------------ATGGGA-CTTCGACATGCT-TG--GCA-GAT-CGCGGACAAAA-GTAT--TCCACCATTT-G--G--TCAG--AAATAAGTCAAA-----------CAGATGGTA-TGT-TAA--TTTAAGCCAAGCCCCTGCTAAC--TGATG--TTCTTTTCAATTT----------GA---TGTT--------TTC----A----T-T-----AAA--T----------TA--------CAG-GTGAA-----CAAA---------A-CA-TATGAT---TATCAGG----CATCGTAATTAT-GAGG------AT-AAGG--AGGCCAA-T-TTCCTA-CA-AATC-----A-----TT--TA-----TTAC---TTCCTT----AC-GCT--TTTTAAATCTTA-----A----------------TTTTCAAA----TG-
gi|5 : tgtaatgcattaggccaaaaaaaaaaaatatgtctgtttcctgctgcccgaccgaccaggactcaaaacccgacctggatttttttttttttttttttaaatccgaataacatttaaaatgttgacaaatccaaagagcattccaatttgcagattttatggctatataaattcagtctaacagttaattcactacaatttaaggccaatgtTAAAT-CA-GT-CTTCACTAC-A----ATTAAAGTCCAG-TGTGTTGATTGCGTAA---------CCACTTTCAAATAGGGT-TTTCT-A-ACT------------ATGGGA-ATTCGACATGCT-TG--GCA-GAT-CACGGACGAAAG-TAC--TCCGCCA-TGTG--GACTCAG--ACATG---C--------------CA-AGCC--TTGA---A--TT---ATTAA--CCCTGCTAAT--TGATGGTTTTTTTTCATTTT----------GA---TGTTGTTTTCAGTAA----A----T-TATGGGTAAA-CAA-----A-ATAAAAGCAGTCAACGTATAATTGTCAAA---------AT-ACAAGGTT-----T-GGG----CATCGTAATTAT-GAGG------AT-AAGA--AGGCCAA-T-TTCCTT-CA-AAGC-----A
gi|6 : gccaaaaaaatataagtctgtttcctgctgcccgaccgacctggactcaaaacccccgacctggatttttaaaaaaaaatttctcttgttttaaaaattttgagtaacatttaaaatgttggcaaatcaaggaattcatatctatataTTTGAATTA----------GAATTTATT--------TCA----AATTAT-T-----TAA----A-----G-ATA---------AACA--AAAT---GCAG---------GTGGTTTGGCTGTATTTGAGA----CATAGCAATTAA-GAGG------ATAAA-A--AGGTCAA-TATTC----------------AA------------------------------GAAA-ACA--TTTT---------------------------------TCAT-----TA-TTTT-G--A-AAATAGT-T--TTAAA-A-TC-T------T-ATT-TTTGAATGTTATGTTGGAATAATTAATC-----A--AA----AATC----GATGATCTCTTCTACTTGT--CT---TTATTG---------AT--------C------AT----TA--------GAAATTTTTAGATAGGTA--AAG-------AAGGTCTCA-ACA-ACAATCAAATCATGGAAATT----------------CTCGGCAT------C--ATAATTTAA-TGGACATAT--GCAACCA--TTTTAT----G-ATTGATAT---TT---TGTACAGATTTT-GTACCACA---TTTT-GT--AA---ACT-TGTGTACA-GATTAT-----TCACTAAA----AAT---CACA--C-----CTTTGCAAAG----T-----------------GTACAG-ATT-T--GTGGTTGAAA-AATAA-T--CA-TGTATGcaatttcttactt
gi|7 : aA-ACACTTTTTAA-----ATCTTAA----------------TTTTCAAAATAATG-TATT-GTTA-AAATAAT-TGATAAAACA-CC-TAT--T-T-CAT-TTT-AACTGCAAGTT-GATTATGTCACC-----G--AA-TATAATCACCCGA--ATTTCCTCTAATTTT--TTTTTA-ATCGCTTGCAAATAT-GCCAGT-TTGGACAAT-GAATGTTGAATTAAAAAAT---AGCAATGTATGAAACTATTCTGAGA-C-CACA---GCA--TAGATC-------TC-GT-G-GAA-TATTT--TCAGCAT------ATTATATTTATACTAAACGTAT--GACACCA--TTTTGT----T-ATCAATGTACTTTG--TGCA--GATTTTTGTACCATA---TTTA-GC--AA---ATT-TGCATGCA-TATTTT-----TCACTCAA----AAT---CACA--C-----TTTTTTTAAGGCCTC-----------------GTACAA-ATT-T--AAGGTTG-AA-AATTA-TCACA-TGTta
gi|8 : ATATAAAGGTC-TCCACA-ACAATCAGATCATGGAATTT-GTTG-AAA-TATTT-CTTGGCAT------C--ATACTTTCA-TGGACATATTAAAAAC-A--TTTTA-----------ATAT---TT---TGTACAGATTTT-GTACCACA---TTTT-GC--AA---ACT-TGTGTACA-GATTTT-----TCATTTAA----AAT---CACA--C-----CGTTTTAAAGGTATT-----------------GCACAG-ATT-T--GTGGTTGAAA-AATTA-TCAC---GTATGCt
gi|9 : gttatgttggaataattgattaaatctttattcGTAT-AGT----TATCATAATCATAGAGG------CTGGACA--AGACCAA-T-TTACCA-AATAAGA-----GA--TCTTATTA-----TGAC---T---TT--GAAATATA--TTTTAA-----A-----AGCTTGAGAAAAAATTATTTTTAAA----TG-CTTT-GTAAAGAGTAATATGATAAAA----T-TAT--G-T-AATATTT-AGTTGTAAGTTT-AGT-TG-CAAC-----AGCAA-TGTGATC-CGCGA--ATTTC-TCTAATTTT--CA---T-ATCGC-----AA-AT-GCAAGGAT------AT-ATATG--------at
blockSeqs : TGCA T A T T TTTTCTG T CAGAC A TT T C CACTACAATTAAAGTC AACTCCAGATCACAATGCATTTCTGTACTTGTACG AC C GC T T GG A TTGTTGTCAGATATGAATAGAAGCAAGACTAGGTAACTCCATACTAAATTTATTAATCCTGCAACATTGAGTTCTTTTTCATTTTTATTAATAAAATGTTTTCATTAAAGTCAGTGAACAAAACAAAGCGGAGTCAAAGAGATGATTATC C ATACTAGGTTAG T TTAAAA A AAC AT TCA CCATTAATACTTACCCTC GCTT TTG TA CT AAGCTTGAGAAAAAATTA ATAA . C A ATG AA G GAG . TA G AT TC T G CC CGGTGA T A TG T C TTTTTAATCGCTTGCAAATATGCCAGTTTGGACAATGAATGTTGAATTA TTT T T CTATTC TC T T A A G A TATGC A T T CCGGTTA C C TA ACA TG ACT GC C TT . T CA TAG A G ATCAA TTAT ACT GC AATGG TATAAGCGCATTGTACA A C CG T T C
blockSeqs : . . . T . ATGTACA . G . T . . TAGACACTG TCCCATTTTCTAATACCTGACAGTAAAAGG C . A . . G A TGTGGACTCAGACATGCCAAGCCTTGAATTATTAACCCTGCTAATTGATGGTTTTTTTTCATTTTGATGTTGTTTTCAGTAAATTATGGGTAAACAAAATAAAAGCAGTCAACGTATAATTGTCAAAAT C GTATTTGAGA A . A GG TA AAT AAACTTTTTA TTCC G A . ATCTTAA . . . . TA CA . GA . C . TT TA G G TA AGC . A . C T CATATCGCAAATGCAAGGATATATATG . T T TATT C T . A A G A GTTGA . . T ATT A . . CA TG . G T T . . . . . . . T . . . . . . . . . .
blockSeqs : . . T . CTGCAAC . A . . . . TAGAAA CCACTTTCAAATAGGGTTTTCTAACTA C . . . . G C TTTGGTCAGAAATAAGTCAAACAGATGGTATGTTAATTTAAGCCAAGCCCCTGCTAACTGATGTTCTTTTCAATTTGATGTTTTCATTAAATTACAGGTGAACAAAAC C GTCTGTA . . A GG T GA GATCTTATTA T T C . ATCTTAA . . . . TG A . T . T . GC GG A A TC A . A . T T CGAAAATTGCAGGTATTGCAAA . . . . T C . A G G T GTGC . . A A T . . CA TT . . C A . . . . . . . . . . . . . . . . . .
blockSeqs : . A . ATGTACA . G . . . . TAGAA CTTGACTAGGGTTTCCTAACTA C . . . . . C CAGCGTCAATTAAGTGGTTTGAACCATGCAACTGACACCTTTGCATTAGATGTTTGTTCAAATATTAACAGGGATATAACATAAAATTAAAATC T TATCAGG . . G GA T CA ATTTA T G G . CCTTAA . . . . A A . G . T . GT G T A T A . . . C T CTTTATTGATCATTA . C . . G . . GTGG . . A C C . . A T . . C G . . . . . . . . . . . . . . . . . .
blockSeqs : . . AA TCACATGTATGTACT A . . . . . C . TGGG . . . CA T CA AA T G A . TTAA . . . . T . . . . . . T T G . C G . . . . . . . . . . . . . . . A C . . . A . . . . A . . . . . . . . . . . . . . . . . .
blockSeqs : TCCATT . . . . . . . . . A . . . . A . . . . T . . . . . . . . . . . . . . . . . .
blockSeqs : . . . . . T . . . . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . .
blockSeqs : . . . . .
blockSeqCons : NTGTACG******* T* TAGAA**************** G* GTATNTAGG***** ****** GG** AACTTNTTA************* CTTAA*********************** A** GTGN*** CA** TG***** *** ***
originalCons : ACATGTGATATGTACA----GACTGTACAAAAA-AATGTACACTTTTTCAA-TTGAA-TTCACGCTGTA---TGTACAGACTGTACACCAA-AATTCAC--G--CTAAATGAT-AA-TTGTGCAAATCCTTTAAATTCA-GT-CTT---TAG-A----A--------CAGCTGTTTTGATTACGCAA---------TCAC--------A-----TTTCT-GTACT------------GTGGGA-CTTCGACATGCT-TG--ATA-GAT-CACGGACAAAAGGTGTG-TCCACNA-CG-G--G--TCAG--AAGTGGNTCGAA-----------CA-ATTCCATTGA-TAA--TT---ACCAA--CCCTGCTAAC--TGACG--TTCTTTTCAATTT----------GA---TGTT--------TNN----A----T-T-----TAA--CAG-----G-ATA--------CAACGTGAAAT---CAAA---------ATCACTAGGCTGTGTAT-AGG----CATCGTAATCAT-GAGG------ATAAAGA--AGGCCAA-T-TTCCTA-NA-AAGC-----AA--TCTT--TA-----TGAC---T---TT--GAAA-ACA--TTTTAA-----A-----A----------------TTTTCAAA----TG-CTTT-GTAA-GAATAAT-TAATAAAA-A-TC-TAT--G-T-AAT-TTT-AATTNTAAGTTTNAGTGTGTCACC-----A--AA-TGTGATCACCCGA--ATTTCCTCTAATTTT--CT---A-ATCGC-----AA-AT-GCAAGG-T------AT-GTATG--------GAAATT---AGGAATGTATGAAG-TATTTAAAGGTC-CACATA-ACAATCAAATCATGGAAATT-GT-G-CAA-CATTT-CTCGGCNT------A--ATACTTTTA-TGGACATAT--GAAAC-A--TTTTAT----T-ATTGATAT---TTG--TGCACAGATTTN-GTACCACA---TTTT-GC--AA---ACT-TGTGTACA-GATTTT-----TCACTCAA----AAT---CACG--C-----TTTTTCAAAGGCATT-----------------GTACAG-ATT-T--GGGGTTGAAA-AATTA-TCACA-TGTATGC
finalCons : ACATGTGATATGTACA----GACTGTACAAAAA-AATGTACACTTTTTCAA-TTGAA-TTCACGNTGTACG-------GACTGTACACCAA-AATTCAC--G--CTAAATGAT-AAT-TGTGCAAATCCTTTAAATTCA-GT-CTTTAGAA----------------CAGCTGTTTTGATTACGCAA---------TCAC--------A-----TTTCT-GTACT------------GTGGGA-CTTCGACATGCT-TG--ATA-GAT-CACGGACAAAAGGTGTG-TCCACNA-CG-G--G--TCAG--AAGTGGNTCGAA-----------CA-ATTCCATTGA-TAA--TT---ACCAA--CCCTGCTAAC--TGACG--TTCTTTTCAATTT----------GA---TGTT--------TNN----A----T-T-----TAA--CAG-----G-ATA--------CAACGTGAAAT---CAAA---------ATCACTAGGCTGTATNTAGG-----CATCGTAATCAT-GAGG------ATAAAGG--AGGCCAA-T-TTCCTA-NA-AAGCAACTTNTTA-------------TGAC---T---TT--GAAA-ACA--TTTTAACTTAA-----------------------TTTTCAAA----TG-CTTT-GTAA-GAATAAT-TAATAAAAA--TC-TAT--G-T-AAT-TTT-AATTNTAAGTTTNAGTGTGTCACC-----A--AA-TGTGATCACCCGA--ATTTCCTCTAATTTT--CT---A-ATCGC-----AA-AT-GCAAGG-T------AT-GTATG--------GAAATT---AGGAATGTATGAAG-TATTTAAAGGTC-CACATA-ACAATCAAATCATGGAAATTGTGN---AA-CATTT-CTCGGCNT------A--ATACTTTTA-TGGACATAT--GAAACCA--TTTTATG-----ATTGATAT---TT---TGCACAGATTTN-GTACCACA---TTTT-GC--AA---ACT-TGTGTACA-GATTTT-----TCACTCAA----AAT---CACG--C-----TTTTTCAAAGGCATT-----------------GTACAG-ATT-T--GGGGTTGAAA-AATTA-TCACA-TGTATGC
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|13 ): CATTCATCCTAGAAAAACACTGAGGAAATTACGTATTTGTACTTCGCATAAGGCCAAACCAAAAAAAAAAAGTCTGTTTCCTGCTGCCCGGCCCACCTTGATGCCTGGGATTTTTTTTTTTTTTTTTTTTTGGGTCTTAAAAATTCCGAATATTAAACATTAAATAATTGATGAATC
Alignments
lowQualScore : 1111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 2222 1 33333333333 11111 22 333333333333333333333 888888888888888888888888888888888888888888888888888 11 11 4444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444 11111 1 333333 2222 22222222222 11111 55555555555555555555555555 1111 111 111 1111 11 11 11111111 5555555555555555555555555555555555555555555555555555555 111 1 1111111 1111 1 2222222 333333333 22222222222 111 11111 111 11111 1111 22222222222222222
lowQualScore : 8888 0 0 0 8 1 8 1 44444444444 8 55555 0 8 11 6 6 333333333333333333333 999999999999999999999999999999999999999999999999999 66 5 33 5 5 77 1 4444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444 1 777 1 1 5 33333 1 222222 7 0000 999 666 11111111111 33 44444 888 888888 55555555555555555555555555 0 0000 66 6 6 000 222 6 4444 6 00 6 22 00 1 3 44 99999999 6 7 99 1 1111111111111111111111111111111111111111111111111111111 777 0 5 3 5555555 2222 22 8 0 0 1 1111111 1 8 1 444444444 1 6 5 88 22222222222 77 777 00000 5 1 111 55 777 4 4 00000 1111 666 55 99999 33333333333333333 3 3 44 3 3 3
lowQualScore : .... . . . . . . . ........... . ..... . . .. . . ..................... ................................................... .. . .. . . .. . ............................................................................................................................................................................................................. . ... . . . ..... . ...... . .... ... ... ........... .. ..... ... ...... .......................... . .... .. . . ... ... . .... . .. . .. .. . . .. ........ . . .. . ....................................................... ... . . . ....... .... .. . . . . ....... . . . ......... . . . .. ........... .. ... ..... . . ... .. ... . . ..... .... ... .. ..... ................. . . .. . . .
lowQualScore : 3333 0 8 8 0 0 0 0 44444444444 0 22222 8 0 66 7 7 555555555555555555555 666666666666666666666666666666666666666666666666666 44 7 66 7 7 11 0 3333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333 0 888 5 0 7 99999 4 999999 1 3333 444 666 00000000000 11 33333 666 444444 22222222222222222222222222 2 6666 00 7 7 000 555 7 2222 7 88 7 77 77 0 7 22 33333333 7 3 22 7 5555555555555555555555555555555555555555555555555555555 555 2 5 2 4444444 0000 66 0 6 8 0 8888888 4 0 0 666666666 0 7 7 77 66666666666 99 999 33333 0 0 000 55 000 0 0 00000 4444 444 00 11111 33333333333333333 3 3 66 3 6 6
consensus : ACATGTGATATGTACA----GACTGTACAAAAA-AATGTACACTTTTTCAA-TTGAA-TTCACGNTGTA---CG----GACTGTACACCAA-AATTCAC--G--CTAAATGAT-AA-TTGTGCAAATCCTTTAAATTCA-GT-CTT---TAG-A----A--------CAGCTGTTTTGATTACGCAA---------TCAC--------A-----TTTCT-GTACT------------GTGGGA-CTTCGACATGCT-TG--ATA-GAT-CACGGACAAAAGGTGTG-TCCACNA-CG-G--G--TCAG--AAGTGGNTCGAA-----------CA-ATTCCATTGA-TAA--TT---ACCAA--CCCTGCTAAC--TGACG--TTCTTTTCAATTT----------GA---TGTT--------TNN----A----T-T-----TAA--CAG-----G-ATA--------CAACGTGAAAT---CAAA---------ATCACTAGGCTGTATNT-AGG----CATCGTAATCAT-GAGG------ATAAAGA--AGGCCAA-T-TTCCTANA-AAG--CAA-CTTATTACGACT-----TT--GAAA-ACA--TTTT-AAA--C------TTA----------ATTTTCAAA----TG-CTTT-GT-AAGAATAAT-TAATAAAA-A-TC-TAT--G-T-AAT-TTT-AATTNTAAGTTTNAGTGTGTCACC-----A--AA-TGTGATCACCCGA--ATTTCCTCTAATTTT--CT---A-ATCGC-----AA-AT-GCAAGG-T------AT-GTATG--------GAAATT---AGGAATGTATGAAG-TATTTAAAGGTC-CACACA-ACAATCAAATCATGGAAATT-GT-G-NAACATTT-CTCGGCAT------A--ATACTTTTA-TGGACATAT-GAAAC-CATTTTG-----TG-ATCGA--TATTT---TGCA-C---AGA-TTTNGTACCACA---TTTTGC--AA---ACT-TGTGTACAG-ATTTT-----TCACTCAA----AAT---CACG--C-----TTTTTCAAAGGCATT-----------------GTACAG-ATT-T--GGGGTTGAAA-AATTA-TCACA-TGTATGC
Reference ( family-1524 ) : ACATGTGATATGTACA----GACTGTACAAAAA-AATGTACACTTTTTCAA-TTGAA-TTCACGNTGTA---CG----GACTGTACACCAA-AATTCAC--G--CTAAATGAT-AA-TTGTGCAAATCCTTTAAATTCA-GT-CTT---TAG-A----A--------CAGCTGTTTTGATTACGCAA---------TCAC--------A-----TTTCT-GTACT------------GTGGGA-CTTCGACATGCT-TG--ATA-GAT-CACGGACAAAAGGTGTG-TCCACNA-CG-G--G--TCAG--AAGTGGNTCGAA-----------CA-ATTCCATTGA-TAA--TT---ACCAA--CCCTGCTAAC--TGACG--TTCTTTTCAATTT----------GA---TGTT--------TNN----A----T-T-----TAA--CAG-----G-ATA--------CAACGTGAAAT---CAAA---------ATCACTAGGCTGTATNT-AGG----CATCGTAATCAT-GAGG------ATAAAGG--AGGCCAA-T-TTCCTANA-AAG--CAA-CTTNTTATGACT-----TT--GAAA-ACA--TTTT-AA---C------TTA----------ATTTTCAAA----TG-CTTT-GT-AAGAATAAT-TAATAAAA-A-TC-TAT--G-T-AAT-TTT-AATTNTAAGTTTNAGTGTGTCACC-----A--AA-TGTGATCACCCGA--ATTTCCTCTAATTTT--CT---A-ATCGC-----AA-AT-GCAAGG-T------AT-GTATG--------GAAATT---AGGAATGTATGAAG-TATTTAAAGGTC-CACATA-ACAATCAAATCATGGAAATT-GT-G-NAACATTT-CTCGGCNT------A--ATACTTTTA-TGGACATAT-GAAAC-CATTTTA-----TG-ATTGA--TATTT---TGCA-C---AGA-TTTNGTACCACA---TTTTGC--AA---ACT-TGTGTACAG-ATTTT-----TCACTCAA----AAT---CACG--C-----TTTTTCAAAGGCATT-----------------GTACAG-ATT-T--GGGGTTGAAA-AATTA-TCACA-TGTATGC
gi|1 : ACATGTGATATGTACA----GACTGTACAAAAA-AATGTACACTTTCTTAA-TGGAA-TTCACGCTGTAAAGTGTAAAGACTGTACACAAA-AATTCAC--G--CTAAATGAT-AAATTGTGCAAATCCTTTAAATTCA-GC-CTT---GAG-A----A--------CAGCTGTTTTGATTATGCAA---------TC-C--------A-----TTTCT-GTACT------------GTGGGA-CTTCGATATGCT-TG--ATA-GAT-CACGGACAAAAGGTGTG-TCCACAA-CA-G--G--TCAATTAAGTGGATTGAA-----------CCTATTCCATTAA-TAA--TT---ACCAA-----TGATACC--TGACA--CCTTTTGCA---------------------------------------------------TAA--AAG-----G-ATA--------CAA-AT--AAT---TAAA----------TCACTAGGCTGTGTAT-GGA----CATTGTAGTCAT-GAGGTTGAAAATAAAAACCAAATCAA-T-TTCCTAGA-AAG--CAA-CCT-TTACGACT-----TT--GAAA-ACA--TTTC-AA------------A----------ACCTTTAAA----TGGCTTT-GT-AAGAATAAT-TAATAAAA-A-TC-TAT--G-TTAAC-TTT-AATTTTAAGTTTTAGTGTGTCACC-----A--AA-TGTGATCATCCGA--ATTTCCTCTAACTTT--CA---A-ATCGA-----AA-AT-GCAAGG-T------AT-GTATG--------AAAATT---AGGAGTG-ATGAAG-TATTTAAAGGT--CACATATACAATCAAATTATGGAAATT-GT-GCCAACATTT-CTCAGCTT------A--ATACTTTTA-TAGACATAT-GAAA--CATTTTATACGGTA-ATTGA--TATTTGTCTGCA-T---AGA-TTTAGTCTCAGGGTTTTTTGC--AA---ACT-TGTGTACAG-ATTTT-----TCACTCAA----AAT---CACG--C-----TTTTTCAAAGGCATT-----------------GTACAG-ATT-T--GGGGTTGAAA-AATTA-TCACA-TGTATGC
gi|10 : TGACATGTACA----GACTGTACAAAAATAAAGT-CACTTTTTCAA-TTGAA-ATCACATTTTC---TG------CTGTACATCAATAATTCACCAGACCTAAATGAT-AA--TGTGCAAATCCTTTAAATTCATGTCCTT---TAGAA----A--------CAGCTGTTTTGATTATGCAA---------TCCC--------AT----TTTCTAATACCTGACAGTAAAAGGTGGGA--TTTGATATGCTCTGA-ATATAAT-CATGGATAAAAGGTGTG-TCCAC
gi|11 : ACTTTTA-TGTACATAT-TAAACACATTTTG-----TG-ATTGA--TATTT---TGTA-C---AGA-TTTTGTACCACAT--TTTTGC--AA---ACT-TGTGTATAG-ATTTT-----TGACTCAATTATAAT---CACA--C-----CTTTATAAAGGCATT-----------------GTACAG-GTT-T--GTGCTTG-AA-AATTA-TCACA-TGTA
gi|12 : tcaaatgattaaaaactacacaaaatgaaaacggcGTAC-CTTTTTCAAATTGAG-TTCACGATGTA---CA----GATTGTACACCAA-AACACAC--G--CT------------TGTGCAAATCCTTTAAATTCA-GT-CTT---TAG-A----A--------CAGCTGTTTTGATTACGCAA---------TC-C--------A-----TT-------------------------GG-CTTTGATATGCT-TG--ATA-GAT-CACGGATAAAAGGCGTG-TCCACAA-C---------------AGTGGTTTGAA-----------CACATTCCATTGA-TAA--T
gi|14 : ACATGTGATAAGTACATGCAGACTGTACAAAAA-AATGCACACTTTTTCAA-CTTACTTTCACGCTGCA---AC----GCCTGTACACCAA-AATTCAC--A--CAAAATGAT-AATTTTTGCAAATCCATTAAATTCA-GT-CT--------A----A--------CAGCTGTTCTTATTATGCAA---------CC-C--------A-----TT
gi|15 : ACATAT-ACAAT-CACATTG-----TGCA--AA--CATTT---CTCAGCTTAAGA-TTTAGTACCACA---TTTTGC--AA---ACT-TGTGTACAG-ATTTT-----TCACTCAA----AAT---CACG--C-----TTTTTCAAAGGCATT-----------------GTACAG-ATT-T--GGGGTTGAAA-AATTA-TCACA-TGTATG
gi|16 : aaaggtcTTATGACT-----TTTTGAAA---------T------C------TTA----------ATTTTCATA----TG-GTTT-AT-AAGAATAAT-TAACGAAA-A-TTGTATGAG-T-AA--TTT-AATCATAAG-TTCATTGTGCCTCC-----A--AATTGTGATAACCCGA--ATTTCTTCTCATCTTTACT---A-TTCGC-----AA-AT-Gt
gi|17 : CA---TTATGT--AATAGACT-TGTGTACAG-ATTTT-----TCACTCAA----AAT---CACG--C-----TTTTATAAAGGCATTTATAAGCGCATTGTACAGTACAG-CTT-T--GGGGTTCAAA-AATTA-TAACA-TGTAT
gi|18 : ---TTTTG---AA---ACT-TGTGCACAG-ATGTT-----TC-TTC------ACT---CACG--CAATGGTTTTTTAAGTTCATG-----------------GCTCAG-ATTCT--GGGGTTGAAATAATTATTCAAACTGTATG
gi|19 : gggttatgatA-TTAGGTATCACC---TATTGCCAAA---ACTATGT-TACAG-ATGTTATCAATTATTAAA----AATACTTACGGCC-----TTTGTAAAAGCCATT-----------------GTACAGAATC-T--GCAGTTGAAA-AAaga
gi|2 : CTATAAATTCA-GT-TTT---TAG-ACACTG--------CAGCTGTTTTGATTACGCAAAACTCCAGATCAC--------AATGCATTTCT-GTACTTGTAC-------GTGGGAACTTCGATATGCT-GG--ATC-GATTCA-GGACAA--GGTGTGGTCCACAA-CA-GC-G--TCAATTAAGTGGTTTGAA-----------C-------------------------CA------TGC-AAC--TGACA--C-CTTTGCA-TTA----------GA---TGTT--------TGTTCAAA----TAT-----TAA--CAG-----GGATA--------TAACATAAAAT---TAAA---------ATCTCTAGGCTGTCTGT-A--------------TCAT-GAGGTTAAAAATAAAAAC-AGACCAAAT-TTCCTAGA-AAG--CAAACTTTTTATGACT-----TT--GAAA-ACA--TTTA-AA---CC-----TTA----------ATATTAAAA----TG-CTTTCGT-AAGAATAAT--AATAAAA-AATC-TAT--GAT-AAC-TTT-AATTT--AGTTTACGTGCGT-ACCCGGTGA--AA-TGTGATCATCCGA--ATTTCCTCTAAT--------------CGA-----AA-ATTGCA-GG-T------ATTGCAAA--------GAAATT---AGGAATG-ATGAAG-TATT-AAAGGTC--ACATA-ACA-TCAAATTATGGAAATTTAT-G-CAACATTTTCTCAGCTTCCGGTTA--AT--CTTTA-TAGACATAT-GAAAC--ATTTTA-----TA-AT-GA--TATTCGC-TGCA-T---AGA-TTTAGTACCACA---TTTTGC--AA---ATT-TGTGTACAGGATTTT-----TCACTCAAT---AAT---CAAG--C-----TTTTTCAAAGGCATT-----------------GAACAG-CTT-TCGGGGGTTGAAA-ACTTA-TCACA-
gi|20 : aTGTACAAAAA-AATGTACACTTTTTCAA-TAGAA-TTCACGATGTA---CA----GACTGTACACCAA-AATTCAC--G--CTAAATGATAAA-TTGAGCAAATCCTTTAAAtgt
gi|21 : AA----AAT---CACG--C-----TTTTTCAAAGGCATT-----------------GTACAG-ATT-T--AGGGTTGAAA-ATTTA-TCACA-TGTATGg
gi|22 : TTCAAAGGCATT-----------------GTACAG-CTT-T--GGGGTTAAAA-AATTA-TCACA-TGTAT
gi|3 : AA---------TCAC--------A-----TGTAT-GTACT-----------------A-CT---ACATGCT-GGGCATA--AT-CACAGACAAAAAGTGC--TCCACCA-TT-GTTG--TCAG--ATATGAATAGAAGCAAGACTAGGTA-ACTCCAT--ACTAAATTT---ATTAA--TCCTGC-AACATTGA-G--TTCTTTTTCATTTTTATTAATAAAA---TGTT--------TTC----A----T-T-----AAAGTCAGTGAACA-AAA--------CAAAGCGGAGT---CAAAGAGATGATTATCACTGGGTCATA-CT-AGGTTAGCATCTTAATTATTGAGG------ATAAGGG--AGGCCAA---TTCCTATC-AA----AA-CCCATTAATACTTACCCTC--TAAC-GCT--TTTTAAA---CCATCAATTA----------ATTTTCAAA----TG-
gi|4 : tttcctaccgccgaaccgaccatgactcaaaaaccctcgacctggatttttttttttttttaaatccgaataaacatctttaatatgttgcagaatcagaaaaacattccaatttgcagccattttttttaggtctataaaatcagtgttatacagttataattcaatacaatttttaagtccaatgtgtgttgaattgcgtaacacttgactagggtttaacctTTTTGATTGCGTAACT-------TGACTAGG----G-----TTTCC-TAACT------------ATGGGA-CTTCGACATGCT-TG--GCA-GAT-CGCGGACAAAA-GTAT--TCCACCATTT-G--G--TCAG--AAATAAGTCAAA-----------CAGATGGTA-TGT-TAA--TTTAAGCCAAGCCCCTGCTAAC--TGATG--TTCTTTTCAATTT----------GA---TGTT--------TTC----A----T-T-----AAA--T----------TA--------CAG-GTGAA-----CAAA---------A-CA-TATGAT-TATC--AGG----CATCGTAATTAT-GAGG------AT-AAGG--AGGCCAA-T-TTCCTACA-AAT--C-A-TTTATTACTTCC-----TT----AC-GCT--TTTT-AAAT-C------TTA----------ATTTTCAAA----TG-
gi|5 : tgtaatgcattaggccaaaaaaaaaaaatatgtctgtttcctgctgcccgaccgaccaggactcaaaacccgacctggatttttttttttttttttttaaatccgaataacatttaaaatgttgacaaatccaaagagcattccaatttgcagattttatggctatataaattcagtctaacagttaattcactacaatttaaggccaatgtTAAAT-CA-GT-CTTCACTAC-A----ATTAAAGTCCAG-TGTGTTGATTGCGTAA---------CCACTTTCAAATAGGGT-TTTCT-A-ACT------------ATGGGA-ATTCGACATGCT-TG--GCA-GAT-CACGGACGAAAG-TAC--TCCGCCA-TGTG--GACTCAG--ACATG---C--------------CA-AGCC--TTGA---A--TT---ATTAA--CCCTGCTAAT--TGATGGTTTTTTTTCATTTT----------GA---TGTTGTTTTCAGTAA----A----T-TATGGGTAAA-CAA-----A-ATAAAAGCAGTCAACGTATAATTGTCAAA---------AT-ACAAGG-----TTT-GGG----CATCGTAATTAT-GAGG------AT-AAGA--AGGCCAA-T-TTCCTTCA-AAGCACAA-TTTCTTA
gi|6 : gccaaaaaaatataagtctgtttcctgctgcccgaccgacctggactcaaaacccccgacctggatttttaaaaaaaaatttctcttgttttaaaaattttgagtaacatttaaaatgttggcaaatcaaggaattcatatctatataTTTGAATTA----------GAATTTATT--------TCA----AATTAT-T-----TAA----A-----G-ATA---------AACA--AAAT---GCAG---------GTGGTTTGGCTGTATTTGAGA----CATAGCAATTAA-GAGG------ATAAAA---AGGTCAA-TATTC------------AA----------------------GAAA-ACA--TTTT--------------TC----------ATT-----A----T---TTT-G---AAAATAGT-T--TTAAA-A-TC-T------T-ATT-TTTGAATGTTATGTTGGAATAATTAATC-----A--AA----AATC----GATGATCTCTTCTACTTGT--CT---TTATTG---------AT--------C------AT----TA--------GAAATTTTTAGATAGGTA--AAG-------AAGGTCTCA-ACA-ACAATCAAATCATGGAAATT---------------CTCGGCAT------C--ATAATTTAA-TGGACATAT-GCAAC-CATTTTA-----TG-ATTGA--TATTT---TGTA-C---AGA-TTTTGTACCACA---TTTTGT--AA---ACT-TGTGTACAG-ATTAT-----TCACTAAA----AAT---CACA--C-----CTTTGCAAAG----T-----------------GTACAG-ATT-T--GTGGTTGAAA-AATAA-T--CA-TGTATGctt
gi|7 : aA-ACACTTTTT-AAAT-C------TTA----------ATTTTCAAAATAATG-TATT-GT-TAAAATAAT-TGATAAAACA-CC-TAT--T-T-CAT-TTT-AACTGCAAGTT-GATTATGTCACC-----G--AA-TATAATCACCCGA--ATTTCCTCTAATTTT--TTTTTA-ATCGCTTGCAAATAT-GCCAGT-TTGGACAAT-GAATGTTGAATTAAAAAAT---AGCAATGTATGAAACTATTCTGAGA-C-CAC--A-GCA--TAGATC-------TC-GT-G-GAATATTT--TCAGCAT------ATTATATTTATACTAAACGTAT-GACAC-CATTTTG-----TT-ATCAATGTACTT---TGTG-C---AGATTTTTGTACCATA---TTTAGC--AA---ATT-TGCATGCAT-ATTTT-----TCACTCAA----AAT---CACA--C-----TTTTTTTAAGGCCTC-----------------GTACAA-ATT-T--AAGGTTG-AA-AATTA-TCACA-TGTta
gi|8 : ATATAAAGGTC-TCCACA-ACAATCAGATCATGGAATTT-GTTG-AAATATTT-CTTGGCAT------C--ATACTTTCA-TGGACATATTAAAAA-CATTTTA------------A--TATTT---TGTA-C---AGA-TTTTGTACCACA---TTTTGC--AA---ACT-TGTGTACAG-ATTTT-----TCATTTAA----AAT---CACA--C-----CGTTTTAAAGGTATT-----------------GCACAG-ATT-T--GTGGTTGAAA-AATTA-TCAC---GTATGCt
gi|9 : gttatgttggaataattgattaaatctttattcTAT-AGT----TATCATAATCATAGAGG------CTGGACA--AGACCAA-T-TTACCAAATAAG--AGATCTTATTATGACT-----TT--GAAATATA--TTTT-AAAAGC------TTGAGAAAAAATTATTTTTAAA----TG-CTTT-GTAAAGAGTAATATGATAAAA----T-TAT--G-T-AATATTT-AGTTGTAAGTTT-AGT-TG-CAAC-----AGCAA-TGTGATC-CGCGA--ATTT-CTCTAATTTT--CA---T-ATCGC-----AA-AT-GCAAGGAT------AT-ATATG--------at
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|13 ): CATTCATCCTAGAAAAACACTGAGGAAATTACGTATTTGTACTTCGCATAAGGCCAAACCAAAAAAAAAAAGTCTGTTTCCTGCTGCCCGGCCCACCTTGATGCCTGGGATTTTTTTTTTTTTTTTTTTTTGGGTCTTAAAAATTCCGAATATTAAACATTAAATAATTGATGAATC