lowQualScore : 111 111 11 2222222222 7777777777777777777777777777777777777777777777 1111 222222 3333333333 11 1 111 55555555555555555555555555 11
lowQualScore : 111 111 00 6666666666 1 4444444444444444444444444444444444444444444444 8888 777 0000 1 4 888888 8888888888 00 0 4 0 111 66666666666666666666666666 3 55 1 888 2 6 3
lowQualScore : ... ... .. .......... . .............................................. .... ... .... . . ...... .......... .. . . . ... .......................... . .. . ... . . .
lowQualScore : 777 777 00 3333333333 0 6666666666666666666666666666666666666666666666 5555 000 6666 5 0 444444 7777777777 11 2 6 1 777 55555555555555555555555555 0 22 8 555 5 0 0
consensus : TGGGAAT---TC--CGACAGAA-ATGA-------AAGTAAAATGTAAAT--A---TAGAT----ATT--TCAATA-CAT-GAG----G---AC-AT----GA---AC---NGCGACGCTTC-A-CGCCGGCATACTTTTCATGAAGC--GCTAACGCGCT-TCACGAAATA---TG-------AA----NCGT--CG-----CAGTTCATACCCTCATGTACTTTCAAAANTGAAANTT
Reference ( gi|1 ) : TGGGAAT---TC--CAACAGAA-GTGA-------ATATAAAATGTAAAT--A---TAGAT----ATT--TCAATA-CAT-AAG----G---AC-AT----GA---AC---TGTAACGCTTT-A-TGTGGGCATACTTTTCAGGAAGT--ACTAACGCGCC-TCAAGAAATA---TG-------AA----TCGT--CT-----CAGTTTATTCCTTCATGTACTTCCAAAACTAGAATTTT
gi|10 : TGGGAAT---TC--CGACAAAA-GTGA-------AAGTAGAATCTAAAA--A---TTAATTA--ATT--TCAA-A--AT--AG----GTTTGT-AT----GA---AC---AGCATTGCTTC-A-CGCTGGCCTACTTTT-ATGAAGG--CCTAA
gi|3 : TGGGAAT---TCTCCAATAGGA-ATGA-------AAATAAAATGCAAA---A---TAA------------CAATG-CAT-GA-----G---AT-ATTTACGA---AC---AGCAATGCGCT-G-T-----TATACTTTTCGTGAAGC--GCT
gi|15 : tatgcgtatgaatcttcatgagtataatagaactattctaacggcTGGGAAT---TC--CAACAGAATATGAAAGTACCATGTAAAATGTTAAT--
gi|2 : gcttgtgaatcttactaatatagaatgactgacagcGGGAATATTTC--AAAAACAA-ATGA-------AAGCTCAATTTCAAT--A---TAGA-----A------AATA-AAT-ATG---------T-AT----GA---AC---AACAACGCTTC-A-CGTCAGCATACTTTTC-------------ACGCGCT-TCATGTAATATTCTG-------A------CGTCACTTGTAACAGTTCACACCTTCATGTGTTTTCAAAAgc
gi|8 : GGGACT---TC--CGACAGAG-AAGA-------AAGCAAAATATAAATTCACTTTAGAA----ATTAACCGATGGTAT-AAATTGTG---AC-GG----GT---ACCATTGTGACGCTTT-A-TATCGGCATACTTCTCAaaaataatta
gi|7 : ccGAAT---TC---GACAGAA-ATAA-------AAATAAAATGTAAAA--AA--TAAATTTTAGTT--TTGGTA-CAT-GAG----G---GT-AT----GA---AA---GGCAACAACTC-A-CATCAGCATACTTTTC----------TTTACGTGCT-TCAGGAA
gi|14 : AGAT----AT-----AA-A-CAT-TAC----A---GC-AT----GA---AC---TGTGACGCTTC-ACTGC-CACATAC--TTCATGAAGTAAACTAGCGCGCCGT---GAAATG---TG-------gat
gi|9 : atttc--TCAATA-CAT---G----A---ACTAT----GA---AC---TGCAGCACTTT-A-CG----CATGC----------GT--ACTAATGCGCG-TTATAAAGTA---TG-------AA----ATGT--CC-----CAGTTCGTACTTGCGTGTGTTTTCAAAAATGAAAGTT
gi|4 : AATA-CATGAAG----GTATAC-AT----TGTATAC---TGCAATGTTTTGA-TGCCAGTATACTTTTCATGATGC--GAGAATTCACT-TCATGAA-------G-------AA----ACAT--CA-----TAGGTCATTCCCTCATGTACTTTCAg
gi|6 : ATA-CAC-GTG----G---AT-AT----GA---AC---TGTGGCGCTTC-A-CGCCTGCATCCTT-------------CTGACGCGCT-TTACGAAAgtcctaaat
gi|21 : gaagcattttaacaatgcatcaagtgaaggttcgatcgcttcagagatagaatT----GA---AC---GGCTATGCTTC-A-TGGTGGCATGCTTTTCATGAAGC--ACTAACACGCT-TCAaa
gi|17 : GGCATAGTTTTCACGAAGT--TCTGCCGCGCT-TCACGAAATA---TACTGGCGTAAAGCGTCAT--CG-----CAGTTTA-----TCATGTAC
gi|7 : cATG---TG-------AG----TTGT--TG-----CCTTTCATACCCTCATGTAC---CAAAACTAAAATTTa
12 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|5 ): CCATTATCTTCAATGAATGTGAACATGACATGCGTATGAATCGGATTTCAATAAACTCACTGTTTGTATGACTGTTAAATAACGGCTTAGAAATTCTCCGAAAGAAATGAAAATAGAA
Unaligned ( gi|11 ): CATTTTCTCAAGAATATTAACGGTGTGCGTATGAATCTGCCTAGATATAGTGCGACTGTTCTAACGATTGGAAATTATCCTACAGAAATAAAAATAGAATGT
Unaligned ( gi|12 ): GTTGGAAATCCCTAAAAGAGATGAAAGCCTCAGTTTTGAGAAGAGAGTGTAAACTATAACGATTCCCAACCGCATGCTTTTCACGAAGCTCTAATTAATGTT
Unaligned ( gi|13 ): NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCGGCGTATTTTTCCTGAAGCACTAACACGCTTCATC
Unaligned ( gi|16 ): GGGAATTCCAACACAAATACAATTAAGTTAAGTGAGAATGTGAACAACGGTGCTACACTCTGGACAGCATACTTCTTCA
Unaligned ( gi|18 ): CTATTTCCCCAAAAGTATGAACTATGTGCGCATGCGTCTCATTAAATATAGTGTGACTATCTTAACGGCTGGGA
Unaligned ( gi|19 ): TTAATGCCTGGGGATTCCGACAAAAATGAAAGTAGTATGTTGCACCTAATCCTTTAAAAG
Unaligned ( gi|20 ): CATGTATGTCTATTTTAACGACTGGGACTTTCCACAGAAAAGAAAGTAGAATGTAAA
Unaligned ( gi|22 ): TATTTCAGCAGCTGGAAATTCCGACAGAAAACAAAATACATGTACGATATAA
Unaligned ( gi|23 ): ATAAATAACTATTTTAACGGTTGGGAATTCTCCAACAGAAATAAATAAA
Unaligned ( gi|24 ): ATTCCAACGGCTGGCAATGTTCCTACAGAAATGAAAGTAAAATGTA
Unaligned ( gi|25 ): CTATTTTGACGGCTAGGGATTCCGACAGAAATGAAAGTAGGGT
Alignments
lowQualScore : 111 55555555555555555555555 2222222222222 1111111111 33333333 111 33333333 11
lowQualScore : 000 44 0 3 1 0 99999999999999999999999 3 0 0 4444444444444 6666 555 6666 1 3 3 1 5555 2 5555555555 4 0 55555555 44 444 22222222 00 4 1 1
lowQualScore : ... .. . . . . ....................... . . . ............. .... ... .... . . . . .... . .......... . . ........ .. ... ........ .. . . .
lowQualScore : 444 66 8 3 6 5 55555555555555555555555 6 5 2 0000000000000 5555 444 4444 8 1 1 5 7777 7 9999999999 2 1 88888888 66 000 44444444 00 6 0 0
consensus : TGGGAAT---TC--CGACAGAA-ATGAAAGTANAATGTAAAT--A---TAGAT----ATT--TCAAT-ACATGAG----G----AT-AT----GA---AC---NGCGACGCTTC-AC-GCCGG----CATACTT-TTCATGAAGC--GCTAACGCGCTTCACGAAATA--------TGAAACG---TC-------NCAGTTCATNCCTTCATGTACTTTCAAAANTGGAANTT
Reference ( family-152 ) : TGGGAAT---TC--CGACAGAA-ATGAAAGTAAAATGTAAAT--A---TAGAT----ATT--TCAAT-ACATGAG----G----AC-AT----GA---AC---NGCGACGCTTC-AC-GCCGG----CATACTT-TTCATGAAGC--GCTAACGCGCTTCACGAAATA--------TGAANCG---TC-------GCAGTTCATACCCTCATGTACTTTCAAAANTGAAANTT
gi|1 : TGGGAAT---TC--CAACAGAA-GTGAATATAAAATGTAAAT--A---TAGAT----ATT--TCAAT-ACATAAG----G----AC-AT----GA---AC---TGTAACGCTTT-AT-GTGGG----CATACTT-TTCAGGAAGT--ACTAACGCGCCTCAAGAAATA--------TGAATCG---TC-------TCAGTTTATTCCTTCATGTACTTCCAAAACTAGAATTT
gi|10 : TGGGAAT---TC--CGACAAAA-GTGAAAGTAGAATCTAAAA--A---TTAATTA--ATT--TCAA--A-AT-AG----GTTT-GT-AT----GA---AC---AGCATTGCTTC-AC-GCTGG----CCTACTT-TT-ATGAAGG--CCTAAt
gi|12 : GAG----A----GT-GT----AA---AC---TATAACGATTC-CC-AACCG----CATGCTT-TTCACGAAGC--TCTAA
gi|13 : gttggaaatccctaaaagagatgaaagcctcagttttgagaaCCGG----CGTATTT-TTCCTGAAGC--ACTAACACGCTTCAttaatgtt
gi|14 : nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnAGAT----AT-----AA--ACATTAC----A----GC-AT----GA---AC---TGTGACGCTTC-ACTGCC-A----CATAC---TTCATGAAGTAAACTAGCGCGC--CGTGAAATG--------TGtc
gi|15 : atttcTGGGAAT---TC--CAACAGAATATGAAAGTACCATGTAAA
gi|16 : gcttgtgaatcttactaatatagaatgactgacagcGGGAAT---TC--CAACACAA-AT------ACAAT-TAAGT------------------------T-AAGTGAG----A----AT-GT----GA---AC---AACGGTGCTAC-AC-TCTGGACAGCATACTTCTTCAatgttaatgc
gi|17 : CGG----CATAGTT-TTCACGAAGT--TCTGCCGCGCTTCACGAAATATACTGGCGTAAAGCGTCATC-------GCAGTTTA-----TCATGTAC
gi|19 : TGGGGAT---TC--CGACAAAA-ATGAAAGTAGTATGTa
gi|2 : ttaatgccGGGAATATTTC--AAAAACAA-ATGAAAGCTCAATTTCAAT--A---TAGA-----A------AAT-AAATATG----------T-AT----GA---AC---AACAACGCTTC-AC-GTCAG----CATACTT-TTC-------------ACGCGCTTCATGTAATATTC-----TGA--CG---TCACTTGTAACAGTTCACACCTTCATGTGTTTTCAAAAtgcacctaatcctttaaaag
gi|20 : TGGGACT---TT--CCACAGAA-AAGAAAGTAGAATGTAAAaaaataatta
gi|21 : catgtatgtctattttaacgacT----GA---AC---GGCTATGCTTC-AT-GGTGG----CATGCTT-TTCATGAAGC--ACTAACACGCTTCA
gi|24 : TGGCAATGT-TC--CTACAGAA-ATGAAAGTAAAATGTA
gi|25 : attccaacggcTAGGGAT---TC--CGACAGAA-ATGAAAGTA
gi|3 : ctattttgacggcTGGGAAT---TCTCCAATAGGA-ATGAAAATAAAATGCAAA---A---TAA------------CAAT-GCATGA-----G----AT-ATTTACGA---AC---AGCAATG------C-GCTGT----TATACTT-TTCGTGAAGC--GCTgggt
gi|4 : tatgcgtatgaatcttcatgagtataatagaactattctaacggcAAT-ACATGAA----GGTATAC-AT----TGTATAC---TGCAATGTTTTGAT-GCCAG----TATACTT-TTCATGATGC--GAGAATTCACTTCATGAA------------GAAACA---TC-------ATAGGTCATTCCCTCATGTACTTTCA
gi|6 : AT-ACACGTG----G----AT-AT----GA---AC---TGTGGCGCTTC-AC-GCCTG----CATCCTT--------------CTGACGCGCTTTACGAAAgtcctaaat
gi|7 : gaagcattttaacaatgcatcaagtgaaggttcgatcgcttcagagatagaatGAAT---TC---GACAGAA-ATAAAAATAAAATGTAAAA--AA--TAAATTTTAGTT--TTGGT-ACATGAG----G----GT-AT----GA---AA---GGCAACAACTC-AC-ATCAG----CATACTT-TTC----------TTTACGTGCTTCAGGAAaa
gi|8 : GGGACT---TC--CGACAGAG-AAGAAAGCAAAATATAAATTCACTTTAGAA----ATTAACCGATGGTATAAATTGTG----AC-GG----GT---ACCATTGTGACGCTTT-AT-ATCGG----CATACTT-CTCAgat
gi|9 : cc--TCAAT-ACATGA----------ACTAT----GA---AC---TGCAGCACTTT-AC-GCATG----CGTACT-----------------AATGCGCGTTATAAAGTA--------TGAAATG---TC-------CCAGTTCGTACTTGCGTGTGTTTTCAAAAATGAAAGTT
5 sequences could not be aligned to this reference sequence:
Unaligned ( gi|5 ): CCATTATCTTCAATGAATGTGAACATGACATGCGTATGAATCGGATTTCAATAAACTCACTGTTTGTATGACTGTTAAATAACGGCTTAGAAATTCTCCGAAAGAAATGAAAATAGAA
Unaligned ( gi|11 ): CATTTTCTCAAGAATATTAACGGTGTGCGTATGAATCTGCCTAGATATAGTGCGACTGTTCTAACGATTGGAAATTATCCTACAGAAATAAAAATAGAATGT
Unaligned ( gi|18 ): CTATTTCCCCAAAAGTATGAACTATGTGCGCATGCGTCTCATTAAATATAGTGTGACTATCTTAACGGCTGGGA
Unaligned ( gi|22 ): TATTTCAGCAGCTGGAAATTCCGACAGAAAACAAAATACATGTACGATATAA
Unaligned ( gi|23 ): ATAAATAACTATTTTAACGGTTGGGAATTCTCCAACAGAAATAAATAAA
Alignments
lowQualScore : 55555555555555555555555 11111 11111111111 1111111111 33333333 111 22222222
lowQualScore : 999 44 3 1 3 22222222222222222222222 666 0 99999 3 44444 11111111111 3 1 1 3 3 1 5555 2 5555555555 4 0 55555555 0 444 77777777 77 1 1
lowQualScore : ... .. . . . ....................... ... . ..... . ..... ........... . . . . . . .... . .......... . . ........ . ... ........ .. . .
lowQualScore : 666 22 1 0 6 77777777777777777777777 444 5 11111 3 88888 77777777777 1 0 8 1 1 5 7777 7 9999999999 2 1 88888888 8 000 00000000 66 0 0
consensus : TGGGAAT---TC--CGACAGAA-ATGAAAGTANAATGTA-AAT--A---TAGAT----ATT--TCAA---TACA-----TGA-GG---GTAT----G------A-ACNGCGACGCTTC-AC-GCCGG----CATACTT-TTCATGAAGC--GCTAACGCGCTTCACGAAATA--------TGAAACG---TC-------NCAGTTCATNCCTTCATGTACTTTCAAAANTGGAANTT
Reference ( family-152 ) : TGGGAAT---TC--CGACAGAA-ATGAAAGTANAATGTA-AAT--A---TAGAT----ATT--TCAA---TACA-----TGA-GG---ATAT----G------A-ACNGCGACGCTTC-AC-GCCGG----CATACTT-TTCATGAAGC--GCTAACGCGCTTCACGAAATA--------TGAAACG---TC-------NCAGTTCATNCCTTCATGTACTTTCAAAANTGGAANTT
gi|1 : TGGGAAT---TC--CAACAGAA-GTGAATATAAAATGTA-AAT--A---TAGAT----ATT--TCAA---TACA-----TAA-GG---ACAT----G------A-ACTGTAACGCTTT-AT-GTGGG----CATACTT-TTCAGGAAGT--ACTAACGCGCCTCAAGAAATA--------TGAATCG---TC-------TCAGTTTATTCCTTCATGTACTTCCAAAACTAGAATTT
gi|10 : TGGGAAT---TC--CGACAAAA-GTGAAAGTAGAATCTA-AAA--A---TTAATTA--ATT--TCAA----A-A-----T-A-GGTTTGTAT----G------A-ACAGCATTGCTTC-AC-GCTGG----CCTACTT-TT-ATGAAGG--CCTAAt
gi|12 : GA-GA---GTGT----A------A-ACTATAACGATTC-CC-AACCG----CATGCTT-TTCACGAAGC--TCTAA
gi|13 : gttggaaatccctaaaagagatgaaagcctcagttttgagaaCCGG----CGTATTT-TTCCTGAAGC--ACTAACACGCTTCAttaatgtt
gi|14 : nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnAGAT----AT-----AA----ACA-----TTA-CA---GCAT----G------A-ACTGTGACGCTTC-ACTGCC-A----CATAC---TTCATGAAGTAAACTAGCGCGC--CGTGAAATG--------TGtc
gi|15 : atttcTGGGAAT---TC--CAACAGAATATGAAAGTACCATGTA-AA
gi|16 : gcttgtgaatcttactaatatagaatgactgacagcGGGAAT---TC--CAACACAA-AT------ACAAT-TA-AGT---------------------------TAAG-----TGA-GA---ATGT----G------A-ACAACGGTGCTAC-AC-TCTGGACAGCATACTTCTTCAatgttaatgc
gi|17 : CGG----CATAGTT-TTCACGAAGT--TCTGCCGCGCTTCACGAAATATACTGGCGTAAAGCGTCATC-------GCAGTTTA-----TCATGTAC
gi|19 : TGGGGAT---TC--CGACAAAA-ATGAAAGTAGTATGTa
gi|2 : ttaatgccGGGAATATTTC--AAAAACAA-ATGAAAGCTCAATTTC-AAT--A---TAGA-----A------AA---TAAA-----TAT-G-----TAT----G------A-ACAACAACGCTTC-AC-GTCAG----CATACTT-TTC-------------ACGCGCTTCATGTAATATTC-----TG--ACG---TCACTTGTAACAGTTCACACCTTCATGTGTTTTCAAAAtgcacctaatcctttaaaag
gi|20 : TGGGACT---TT--CCACAGAA-AAGAAAGTAGAATGTA-AAaaaataatta
gi|21 : catgtatgtctattttaacgacT----G------A-ACGGCTATGCTTC-AT-GGTGG----CATGCTT-TTCATGAAGC--ACTAACACGCTTCA
gi|22 : TGGAAAT---TC--CGACAGAA-AACAAAATAC-ATGTACGAT--A---TA
gi|24 : tatttcagcagcTGGCAATGT-TC--CTACAGAA-ATGAAAGTAAAATGTA-a
gi|25 : attccaacggcTAGGGAT---TC--CGACAGAA-ATGAAAGTA
gi|3 : ctattttgacggcTGGGAAT---TCTCCAATAGGA-ATGAAAATAAAATGCA-AA---A---TAA------------CAA---TGCA-----TGA-G----ATATTTACG------A-ACAGCAATGC-------GCTGT----TATACTT-TTCGTGAAGC--GCTgggt
gi|4 : tatgcgtatgaatcttcatgagtataatagaactattctaacggcAA---TACA-----TGA-AG---GTAT----ACATTGTATACTGCAATGTTTTGAT-GCCAG----TATACTT-TTCATGATGC--GAGAATTCACTTCATGAA------------GAAACA---TC-------ATAGGTCATTCCCTCATGTACTTTCA
gi|6 : A---TACA-----CGT-GG---ATAT----G------A-ACTGTGGCGCTTC-AC-GCCTG----CATCCTT--------------CTGACGCGCTTTACGAAAgtcctaaat
gi|7 : gaagcattttaacaatgcatcaagtgaaggttcgatcgcttcagagatagaatGAAT---TC---GACAGAA-ATAAAAATAAAATGTA-AAA--AA--TAAATTTTAGTT--TTGG---TACA-----TGA-GG---GTAT----G------A-AAGGCAACAACTC-AC-ATCAG----CATACTT-TTC----------TTTACGTGCTTCAGGAAaa
gi|8 : GGGACT---TC--CGACAGAG-AAGAAAGCAAAATATA-AATTCACTTTAGAA----ATTAACCGATGGTATAAATTGTGACGG---GTAC-----------C-ATTGTGACGCTTT-AT-ATCGG----CATACTT-CTCAgat
gi|9 : cc--TCAA---TACA-----TGA-AC----TAT----G------A-ACTGCAGCACTTT-AC-GCATG----CGTACT-----------------AATGCGCGTTATAAAGTA--------TGAAATG---TC-------CCAGTTCGTACTTGCGTGTGTTTTCAAAAATGAAAGTT
4 sequences could not be aligned to this reference sequence:
Unaligned ( gi|5 ): CCATTATCTTCAATGAATGTGAACATGACATGCGTATGAATCGGATTTCAATAAACTCACTGTTTGTATGACTGTTAAATAACGGCTTAGAAATTCTCCGAAAGAAATGAAAATAGAA
Unaligned ( gi|11 ): CATTTTCTCAAGAATATTAACGGTGTGCGTATGAATCTGCCTAGATATAGTGCGACTGTTCTAACGATTGGAAATTATCCTACAGAAATAAAAATAGAATGT
Unaligned ( gi|18 ): CTATTTCCCCAAAAGTATGAACTATGTGCGCATGCGTCTCATTAAATATAGTGTGACTATCTTAACGGCTGGGA
Unaligned ( gi|23 ): ATAAATAACTATTTTAACGGTTGGGAATTCTCCAACAGAAATAAATAAA
Alignments
lowQualScore : 111 3333333333333333333333 111111111111111111 1111111111 33333333 111 22222222
lowQualScore : 000 44 3 1 4 6666666666666666666666 7777 222222222222222222 999999 3 1 2 3 3 2 6666666666 4 0 55555555 0 444 77777777 77 1 1
lowQualScore : ... .. . . . ...................... .... .................. ...... . . . . . . .......... . . ........ . ... ........ .. . .
lowQualScore : 444 66 3 0 0 9999999999999999999999 8888 555555555555555555 666666 3 0 8 3 3 4 8888888888 2 1 88888888 8 000 00000000 66 0 0
consensus : TGGGAAT---TC--CGACAGAA-ATGAAAGTANAATGTA-AAT--A---TAGAT----ATT--TCAA---TACA-----TGA-GG---G---TATG------A-ACTGCGACGCTTC-AC-GCCGGCATACTTTTCATGAAGC--GCTAACGCGCTTCACGAAATA--------TGAAACG---TC-------NCAGTTCATNCCTTCATGTACTTTCAAAANTGGAANTT
Reference ( family-152 ) : TGGGAAT---TC--CGACAGAA-ATGAAAGTANAATGTA-AAT--A---TAGAT----ATT--TCAA---TACA-----TGA-GG---G---TATG------A-ACNGCGACGCTTC-AC-GCCGGCATACTTTTCATGAAGC--GCTAACGCGCTTCACGAAATA--------TGAAACG---TC-------NCAGTTCATNCCTTCATGTACTTTCAAAANTGGAANTT
gi|1 : TGGGAAT---TC--CAACAGAA-GTGAATATAAAATGTA-AAT--A---TAGAT----ATT--TCAA---TACA-----TAA-GG---A---CATG------A-ACTGTAACGCTTT-AT-GTGGGCATACTTTTCAGGAAGT--ACTAACGCGCCTCAAGAAATA--------TGAATCG---TC-------TCAGTTTATTCCTTCATGTACTTCCAAAACTAGAATTT
gi|10 : TGGGAAT---TC--CGACAAAA-GTGAAAGTAGAATCTA-AAA--A---TTAATTA--ATT--TCAA----A-A-----T-A-GGTTTG---TATG------A-ACAGCATTGCTTC-AC-GCTGGCCTACTTTT-ATGAAGG--CCTAAt
gi|12 : GA-GA---G---TGTA------A-ACTATAACGATTC-CC-AACCGCATGCTTTTCACGAAGC--TCTAA
gi|13 : gttggaaatccctaaaagagatgaaagcctcagttttgagaaCCGGCGTATTTTTCCTGAAGC--ACTAACACGCTTCAttaatgtt
gi|14 : nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnAGAT----AT-----AA----ACA-----TTA-CA---G---CATG------A-ACTGTGACGCTTC-ACTGCC-ACATAC--TTCATGAAGTAAACTAGCGCGC--CGTGAAATG--------TGtc
gi|15 : atttcTGGGAAT---TC--CAACAGAATATGAAAGTACCATGTA-AA
gi|17 : gcttgtgaatcttactaatatagaatgactgacagcCGGCATAGTTTTCACGAAGT--TCTGCCGCGCTTCACGAAATATACTGGCGTAAAGCGTCATC-------GCAGTTTA-----TCATGTACatgttaatgc
gi|19 : TGGGGAT---TC--CGACAAAA-ATGAAAGTAGTATGTa
gi|2 : ttaatgccGGGAATATTTC--AAAAACAA-ATGAAAGCTCAATTTC-AAT--A---TAGA-----A------AA---TAAA-----TA---T---G---TATG------A-ACAACAACGCTTC-AC-GTCAGCATACTTTTC-------------ACGCGCTTCATGTAATATTC-----TG--ACG---TCACTTGTAACAGTTCACACCTTCATGTGTTTTCAAAAtgcacctaatcctttaaaag
gi|20 : TGGGACT---TT--CCACAGAA-AAGAAAGTAGAATGTA-AAaaaataatta
gi|21 : catgtatgtctattttaacgacTG------A-ACGGCTATGCTTC-AT-GGTGGCATGCTTTTCATGAAGC--ACTAACACGCTTCA
gi|22 : TGGAAAT---TC--CGACAGAA-AACAAAATAC-ATGTACGAT--A---TA
gi|24 : tatttcagcagcTGGCAATGT-TC--CTACAGAA-ATGAAAGTAAAATGTA-a
gi|25 : attccaacggcTAGGGAT---TC--CGACAGAA-ATGAAAGTA
gi|3 : ctattttgacggcTGGGAAT---TCTCCAATAGGA-ATGAAAATAAAATGCA-AA---A---TAA------------CAA---TGCA-----TGA-GA---TATTTACG------A-ACAGCAATGC-------GCTGTTATACTTTTCGTGAAGC--GCTgggt
gi|4 : tatgcgtatgaatcttcatgagtataatagaactattctaacggcAA---TACA-----TGA-AG---G---TATACATTGTATACTGCAATGTTTTGAT-GCCAGTATACTTTTCATGATGC--GAGAATTCACTTCATGAA------------GAAACA---TC-------ATAGGTCATTCCCTCATGTACTTTCA
gi|6 : A---TACA-----CGT-GG---A---TATG------A-ACTGTGGCGCTTC-AC-GCCTGCATCCTT-------------CTGACGCGCTTTACGAAAgtcctaaat
gi|7 : gaagcattttaacaatgcatcaagtgaaggttcgatcgcttcagagatagaatGAAT---TC---GACAGAA-ATAAAAATAAAATGTA-AAA--AA--TAAATTTTAGTT--TTGG---TACA-----TGA-GG---G---TATG------A-AAGGCAACAACTC-AC-ATCAGCATACTTTTC----------TTTACGTGCTTCAGGAAaa
gi|8 : GGGACT---TC--CGACAGAG-AAGAAAGCAAAATATA-AATTCACTTTAGAA----ATTAACCGATGGTATAAATTGTGACGG---G---TAC-------C-ATTGTGACGCTTT-AT-ATCGGCATACTTCTCAgat
gi|9 : cc--TCAA---TACA-----TGA-AC-------TATG------A-ACTGCAGCACTTT-AC-GCATGCGTACT----------------AATGCGCGTTATAAAGTA--------TGAAATG---TC-------CCAGTTCGTACTTGCGTGTGTTTTCAAAAATGAAAGTT
5 sequences could not be aligned to this reference sequence:
Unaligned ( gi|5 ): CCATTATCTTCAATGAATGTGAACATGACATGCGTATGAATCGGATTTCAATAAACTCACTGTTTGTATGACTGTTAAATAACGGCTTAGAAATTCTCCGAAAGAAATGAAAATAGAA
Unaligned ( gi|11 ): CATTTTCTCAAGAATATTAACGGTGTGCGTATGAATCTGCCTAGATATAGTGCGACTGTTCTAACGATTGGAAATTATCCTACAGAAATAAAAATAGAATGT
Unaligned ( gi|16 ): GGGAATTCCAACACAAATACAATTAAGTTAAGTGAGAATGTGAACAACGGTGCTACACTCTGGACAGCATACTTCTTCA
Unaligned ( gi|18 ): CTATTTCCCCAAAAGTATGAACTATGTGCGCATGCGTCTCATTAAATATAGTGTGACTATCTTAACGGCTGGGA
Unaligned ( gi|23 ): ATAAATAACTATTTTAACGGTTGGGAATTCTCCAACAGAAATAAATAAA
Alignments
lowQualScore : 111 3333333333333333333333 111111111111111111 1111111111 33333333 111 22222222
lowQualScore : 000 44 3 1 4 6666666666666666666666 7777 222222222222222222 999999 3 1 2 3 3 2 6666666666 4 0 55555555 0 444 77777777 77 1 1
lowQualScore : ... .. . . . ...................... .... .................. ...... . . . . . . .......... . . ........ . ... ........ .. . .
lowQualScore : 444 66 3 0 0 9999999999999999999999 8888 555555555555555555 666666 3 5 8 3 3 4 8888888888 2 1 88888888 8 000 00000000 66 0 0
consensus : TGGGAAT---TC--CGACAGAA-ATGAAAGTANAATGTA-AAT--A---TAGAT----ATT--TCAA---TACA-----TGA-GG---G---TATG------A-ACTGCGACGCTTC-AC-GCCGGCATACTTTTCATGAAGC--GCTAACGCGCTTCACGAAATA--------TGAAACG---TC-------NCAGTTCATNCCTTCATGTACTTTCAAAANTGGAANTT
Reference ( family-152 ) : TGGGAAT---TC--CGACAGAA-ATGAAAGTANAATGTA-AAT--A---TAGAT----ATT--TCAA---TACA-----TGA-GG---G---TATG------A-ACTGCGACGCTTC-AC-GCCGGCATACTTTTCATGAAGC--GCTAACGCGCTTCACGAAATA--------TGAAACG---TC-------NCAGTTCATNCCTTCATGTACTTTCAAAANTGGAANTT
gi|1 : TGGGAAT---TC--CAACAGAA-GTGAATATAAAATGTA-AAT--A---TAGAT----ATT--TCAA---TACA-----TAA-GG---A---CATG------A-ACTGTAACGCTTT-AT-GTGGGCATACTTTTCAGGAAGT--ACTAACGCGCCTCAAGAAATA--------TGAATCG---TC-------TCAGTTTATTCCTTCATGTACTTCCAAAACTAGAATTT
gi|10 : TGGGAAT---TC--CGACAAAA-GTGAAAGTAGAATCTA-AAA--A---TTAATTA--ATT--TCAA----A-A-----T-A-GGTTTG---TATG------A-ACAGCATTGCTTC-AC-GCTGGCCTACTTTT-ATGAAGG--CCTAAt
gi|12 : GA-GA---G---TGTA------A-ACTATAACGATTC-CC-AACCGCATGCTTTTCACGAAGC--TCTAA
gi|13 : gttggaaatccctaaaagagatgaaagcctcagttttgagaaCCGGCGTATTTTTCCTGAAGC--ACTAACACGCTTCAttaatgtt
gi|14 : nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnAGAT----AT-----AA----ACA-----TTA-CA---G---CATG------A-ACTGTGACGCTTC-ACTGCC-ACATAC--TTCATGAAGTAAACTAGCGCGC--CGTGAAATG--------TGtc
gi|15 : atttcTGGGAAT---TC--CAACAGAATATGAAAGTACCATGTA-AA
gi|17 : gcttgtgaatcttactaatatagaatgactgacagcCGGCATAGTTTTCACGAAGT--TCTGCCGCGCTTCACGAAATATACTGGCGTAAAGCGTCATC-------GCAGTTTA-----TCATGTACatgttaatgc
gi|19 : TGGGGAT---TC--CGACAAAA-ATGAAAGTAGTATGTa
gi|2 : ttaatgccGGGAATATTTC--AAAAACAA-ATGAAAGCTCAATTTC-AAT--A---TAGA-----A------AA---TAAA-----TA---T---G---TATG------A-ACAACAACGCTTC-AC-GTCAGCATACTTTTC-------------ACGCGCTTCATGTAATATTC-----TG--ACG---TCACTTGTAACAGTTCACACCTTCATGTGTTTTCAAAAtgcacctaatcctttaaaag
gi|20 : TGGGACT---TT--CCACAGAA-AAGAAAGTAGAATGTA-AAaaaataatta
gi|21 : catgtatgtctattttaacgacTG------A-ACGGCTATGCTTC-AT-GGTGGCATGCTTTTCATGAAGC--ACTAACACGCTTCA
gi|22 : TGGAAAT---TC--CGACAGAA-AACAAAATAC-ATGTACGAT--A---TA
gi|24 : tatttcagcagcTGGCAATGT-TC--CTACAGAA-ATGAAAGTAAAATGTA-a
gi|25 : attccaacggcTAGGGAT---TC--CGACAGAA-ATGAAAGTA
gi|3 : ctattttgacggcTGGGAAT---TCTCCAATAGGA-ATGAAAATAAAATGCA-AA---A---TAA------------CAA---TGCA-----TGA-GA---TATTTACG------A-ACAGCAATGC-------GCTGTTATACTTTTCGTGAAGC--GCTgggt
gi|4 : tatgcgtatgaatcttcatgagtataatagaactattctaacggcAA---TACA-----TGA-AG---G---TATACATTGTATACTGCAATGTTTTGAT-GCCAGTATACTTTTCATGATGC--GAGAATTCACTTCATGAA------------GAAACA---TC-------ATAGGTCATTCCCTCATGTACTTTCA
gi|6 : A---TACA-----CGT-GG---A---TATG------A-ACTGTGGCGCTTC-AC-GCCTGCATCCTT-------------CTGACGCGCTTTACGAAAgtcctaaat
gi|7 : gaagcattttaacaatgcatcaagtgaaggttcgatcgcttcagagatagaatGAAT---TC---GACAGAA-ATAAAAATAAAATGTA-AAA--AA--TAAATTTTAGTT--TTGG---TACA-----TGA-GG---G---TATG------A-AAGGCAACAACTC-AC-ATCAGCATACTTTTC----------TTTACGTGCTTCAGGAAaa
gi|8 : GGGACT---TC--CGACAGAG-AAGAAAGCAAAATATA-AATTCACTTTAGAA----ATTAACCGATGGTATAAATTGTGACGG---G---TAC-------C-ATTGTGACGCTTT-AT-ATCGGCATACTTCTCAgat
gi|9 : cc--TCAA---TACA-----TGA-AC-------TATG------A-ACTGCAGCACTTT-AC-GCATGCGTACT----------------AATGCGCGTTATAAAGTA--------TGAAATG---TC-------CCAGTTCGTACTTGCGTGTGTTTTCAAAAATGAAAGTT
blockSeqs : ATT TC T G C TTCACTTTAGAAATTAAC TGGT AATTGTGACGGG CATTGT T A A G T G ATGAAGTAAA T TACTGGCG TCA ACTTGTAA CA A G
blockSeqs : GT . . C . AAATAAATTTTAGTTT T TGAGATATT . . T A . . C ATGAAGGC C TTC . G TT
blockSeqs : . . . G . AATTAATTAATTT T TAGGTTTG . . T G . . G ACGAAGCT T . . A TA
blockSeqs : . . . C . TATAGAA T TTACAG . . A A . . G CTGAAGCA T . . C .
blockSeqs : . . . G . ATAA T TGAAGG . . G T . . A ACGAAGTT C .
blockSeqs : . . . C . T CGTGGA . . A A . . G ATGAAGCA G
blockSeqs : . . . A . T TGAGGG . . T A . . G GTGAAGCG T
blockSeqs : . . . A . . TGAAC . . T G . . A ATGATGCG
blockSeqs : . . . A . . TATG . . G A . . T .
blockSeqs : . . . A . . T G . . A .
blockSeqs : . . . . . T A . . G .
blockSeqs : T .
blockSeqs : .
blockSeqCons : AATTAATTAAC***********
originalCons : TGGGAAT---TC--CGACAGAA-ATGAAAGTANAATGTA-AAT--A---TAGAT----ATT--TCAA---TACA-----TGA-GG---G---TATG------A-ACTGCGACGCTTC-AC-GCCGGCATACTTTTCATGAAGC--GCTAACGCGCTTCACGAAATA--------TGAAACG---TC-------NCAGTTCATNCCTTCATGTACTTTCAAAANTGGAANTT
finalCons : TGGGAAT---TC--CGACAGAA-ATGAAAGTANAATGTA-AAAATTAATTAAC-----------CAA---TACA-----TGA-GG---G---TATG------A-ACTGCGACGCTTC-AC-GCCGGCATACTTTTCATGAAGC--GCTAACGCGCTTCACGAAATA--------TGAAACG---TC-------NCAGTTCATNCCTTCATGTACTTTCAAAANTGGAANTT
5 sequences could not be aligned to this reference sequence:
Unaligned ( gi|5 ): CCATTATCTTCAATGAATGTGAACATGACATGCGTATGAATCGGATTTCAATAAACTCACTGTTTGTATGACTGTTAAATAACGGCTTAGAAATTCTCCGAAAGAAATGAAAATAGAA
Unaligned ( gi|11 ): CATTTTCTCAAGAATATTAACGGTGTGCGTATGAATCTGCCTAGATATAGTGCGACTGTTCTAACGATTGGAAATTATCCTACAGAAATAAAAATAGAATGT
Unaligned ( gi|16 ): GGGAATTCCAACACAAATACAATTAAGTTAAGTGAGAATGTGAACAACGGTGCTACACTCTGGACAGCATACTTCTTCA
Unaligned ( gi|18 ): CTATTTCCCCAAAAGTATGAACTATGTGCGCATGCGTCTCATTAAATATAGTGTGACTATCTTAACGGCTGGGA
Unaligned ( gi|23 ): ATAAATAACTATTTTAACGGTTGGGAATTCTCCAACAGAAATAAATAAA
Alignments
lowQualScore : 111 555555555555555555555555555555555555 1111 1111111111 33333333 111 22222222
lowQualScore : 000 44 0 3 2 222222222222222222222222222222222222 99999 3 4444 888888 3 2 1 3 3 1 5555 2 5555555555 4 0 55555555 0 444 77777777 77 1 1
lowQualScore : ... .. . . . .................................... ..... . .... ...... . . . . . . .... . .......... . . ........ . ... ........ .. . .
lowQualScore : 444 66 8 3 3 222222222222222222222222222222222222 11111 3 0000 888888 1 7 8 1 1 5 7777 7 9999999999 2 1 88888888 8 000 00000000 66 0 0
consensus : TGGGAAT---TC--CGACAGAA-ATGAAAGTAAAATGTAAA---A-AT---T----AA---TTAA---C--GA---TACA-----TGA-GG---GTATG------A-ACNGCGACGCTTC-AC-GCCGG----CATACTT-TTCATGAAGC--GCTAACGCGCTTCACGAAATA--------TGAAACG---TC-------NCAGTTCATNCCTTCATGTACTTTCAAAANTGGAANTT
Reference ( family-152 ) : TGGGAAT---TC--CGACAGAA-ATGAAAGTANAATGTAAA---A-AT---T----AA---TTAA--CC--AA---TACA-----TGA-GG---GTATG------A-ACTGCGACGCTTC-AC-GCCGG----CATACTT-TTCATGAAGC--GCTAACGCGCTTCACGAAATA--------TGAAACG---TC-------NCAGTTCATNCCTTCATGTACTTTCAAAANTGGAANTT
gi|1 : TGGGAAT---TC--CAACAGAA-GTGAATATAAAATGTAAA---T-ATAGAT----AT---TT-----C--AA---TACA-----TAA-GG---ACATG------A-ACTGTAACGCTTT-AT-GTGGG----CATACTT-TTCAGGAAGT--ACTAACGCGCCTCAAGAAATA--------TGAATCG---TC-------TCAGTTTATTCCTTCATGTACTTCCAAAACTAGAATTT
gi|10 : TGGGAAT---TC--CGACAAAA-GTGAAAGTAGAATCTAAA---A-AT---T----AA---TTAATTTC--AA----A-A-----T-A-GGTTTGTATG------A-ACAGCATTGCTTC-AC-GCTGG----CCTACTT-TT-ATGAAGG--CCTAAt
gi|12 : GA-GA---GTGTA------A-ACTATAACGATTC-CC-AACCG----CATGCTT-TTCACGAAGC--TCTAA
gi|13 : gttggaaatccctaaaagagatgaaagcctcagttttgagaaCCGG----CGTATTT-TTCCTGAAGC--ACTAACACGCTTCAttaatgtt
gi|14 : nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnACA-----TTA-CA---GCATG------A-ACTGTGACGCTTC-ACTGCC-A----CATAC---TTCATGAAGTAAACTAGCGCGC--CGTGAAATG--------TGtc
gi|15 : atttcagatataaTGGGAAT---TC--CAACAGAATATGAAAGTACCATGTAAA---ATGT---T----AA---T
gi|16 : gcttgtgaatcttactaatatagaatgactgacagcGGGAAT---TC--CAACACAA-AT--------------AC---A-AT---T----AAG--TTAA--------------G-----TGA-GA---ATGTG------A-ACAACGGTGCTAC-AC-TCTGGACAGCATACTTCTTCAgc
gi|17 : CGG----CATAGTT-TTCACGAAGT--TCTGCCGCGCTTCACGAAATATACTGGCGTAAAGCGTCATC-------GCAGTTTA-----TCATGTAC
gi|19 : TGGGGAT---TC--CGACAAAA-ATGAAAGTAGTATGTa
gi|2 : ttaatgccGGGAATATTTC--AAAAACAA-ATGAAAGCTCAATTTCAA---T-AT---A----GA-----AA--AT--AA----ATA-----TG--------TATG------A-ACAACAACGCTTC-AC-GTCAG----CATACTT-TTC-------------ACGCGCTTCATGTAATATTC-----TG--ACG---TCACTTGTAACAGTTCACACCTTCATGTGTTTTCAAAAtgcacctaatcctttaaaag
gi|20 : TGGGACT---TT--CCACAGAA-AAGAAAGTAGAATGTAAA---aaaataatta
gi|21 : catgtatgtctattttaacgacTG------A-ACGGCTATGCTTC-AT-GGTGG----CATGCTT-TTCATGAAGC--ACTAACACGCTTCA
gi|24 : TGGCAATGT-TC--CTACAGAA-ATGAAAGTAAAATGTA
gi|25 : attccaacggcTAGGGAT---TC--CGACAGAA-ATGAAAGTA
gi|3 : ctattttgacggcTGGGAAT---TCTCCAATAGGA-ATGAAAATAAAATGCAAA---A------T----AA----------C--AA---TGCA-----TGA-GATATTTACG------A-ACAGCAATG------C-GCTGT----TATACTT-TTCGTGAAGC--GCTgggt
gi|4 : tatgcgtatgaatcttcatgagtataatagaactattctaacggc--AA---TACA-----TGA-AG---GTATACATTGTATACTGCAATGTTTTGAT-GCCAG----TATACTT-TTCATGATGC--GAGAATTCACTTCATGAA------------GAAACA---TC-------ATAGGTCATTCCCTCATGTACTTTCA
gi|6 : A---TACA-----CGT-GG---ATATG------A-ACTGTGGCGCTTC-AC-GCCTG----CATCCTT--------------CTGACGCGCTTTACGAAAgtcctaaat
gi|7 : gaagcattttaacaatgcatcaagtgaaggttcgatcgcttcagagatagaatGAAT---TC---GACAGAA-ATAAAAATAAAATGTAAA---A-AA---T----AAATTTTAG--TTTTGG---TACA-----TGA-GG---GTATG------A-AAGGCAACAACTC-AC-ATCAG----CATACTT-TTC----------TTTACGTGCTTCAGGAAaa
gi|8 : GGGACT---TC--CGACAGAG-AAGAAAGCAAAATATAAATTCA-CT---TTAGAAA---TTAA--CC--GATGGTATAAATTGTGACGG---GTAC-------C-ATTGTGACGCTTT-AT-ATCGG----CATACTT-CTCAgat
gi|9 : ccC--AA---TACA-----TGA-AC----TATG------A-ACTGCAGCACTTT-AC-GCATG----CGTACT-----------------AATGCGCGTTATAAAGTA--------TGAAATG---TC-------CCAGTTCGTACTTGCGTGTGTTTTCAAAAATGAAAGTT
5 sequences could not be aligned to this reference sequence:
Unaligned ( gi|5 ): CCATTATCTTCAATGAATGTGAACATGACATGCGTATGAATCGGATTTCAATAAACTCACTGTTTGTATGACTGTTAAATAACGGCTTAGAAATTCTCCGAAAGAAATGAAAATAGAA
Unaligned ( gi|11 ): CATTTTCTCAAGAATATTAACGGTGTGCGTATGAATCTGCCTAGATATAGTGCGACTGTTCTAACGATTGGAAATTATCCTACAGAAATAAAAATAGAATGT
Unaligned ( gi|18 ): CTATTTCCCCAAAAGTATGAACTATGTGCGCATGCGTCTCATTAAATATAGTGTGACTATCTTAACGGCTGGGA
Unaligned ( gi|22 ): TATTTCAGCAGCTGGAAATTCCGACAGAAAACAAAATACATGTACGATATAA
Unaligned ( gi|23 ): ATAAATAACTATTTTAACGGTTGGGAATTCTCCAACAGAAATAAATAAA