lowQualScore : 4444 22222222222222 222222222 2222222 8888888888888888888888888888888888888888888888888888888888888888888888888 11111111111 222222222222222 11 33333 333333333333 111111111111 11 888888888888888 1 111 1 3333 555555555555 1111111 222222222 1 1 11111 8888888888888888888888888888888888888888888888888888888888888888888888 111 11
lowQualScore : 4 4 0000 0 77 44444444444444 555 3 0 2 555 6 2 44 333333333 55 0000000 9 3 3 0 0 7777 3333333333333333333333333333333333333333333333333333333333333333333333333 5 77777777777 222222222222222 4 99 55 1 88888 4 55 44 999999999999 0 1 4 2 444444444444 00 1 7 000000000000000 5 44 7 2 7777 3 111 2 3 3 6 6 4 1 7777 0 9 111111111111 5555555 111111111 0 1 5 5 0 0 2 11111 9999 4444444444444444444444444444444444444444444444444444444444444444444444 8 111 2 4 0 4 9 666 555 4 44
lowQualScore : . . .... . .. .............. ... . . . ... . . .. ......... .. ....... . . . . . .... ......................................................................... . ........... ............... . .. .. . ..... . .. .. ............ . . . . ............ .. . . ............... . .. . . .... . ... . . . . . . . .... . . ............ ....... ......... . . . . . . . ..... .... ...................................................................... . ... . . . . . ... ... . ..
lowQualScore : 0 4 3333 8 11 33333333333333 999 3 4 8 444 7 2 33 444444444 33 4444444 6 5 6 5 5 7777 6666666666666666666666666666666666666666666666666666666666666666666666666 9 33333333333 666666666666666 0 44 55 9 22222 0 55 77 555555555555 8 6 0 1 555555555555 00 4 4 555555555555555 9 99 3 3 7777 3 999 7 6 5 4 7 4 9 0000 7 4 999999999999 5555555 555555555 7 4 0 0 0 7 2 22222 4444 1111111111111111111111111111111111111111111111111111111111111111111111 3 222 3 0 9 4 9 222 333 5 00
consensus : CCTANTCTT-CCACCTGAATTCGCGCCTATCAGAGTAT-A----------C-CAG-ATCCC-GAACTTTCTTACGC-ATT-TCCT-CGTCGGTGCA--TGGCA-TCCAGTGGG---CGT-CCAGACCTG-GCTTCATCTTCTA----AAGACTGT-----TCTACCGCGT-----T-------T---GA--------------A-------------ATT----TANCC-----------TGAGCA-T-------------AAG-ATGGTGCAGAGAGACCCATAAAC--ATCGGCTAA-TA-ACTCG--CCGT---N-TA-----TTTCCTTGCCTGTT-TTAC----C-T----TTTAAAT-ACAAGCACCGAATT--AC-T-------ATATAGCACGGTACTCAAC-TTTAGACGAA----AAGCGTGCCTTTGC-ATCACTAGCCAT-ATTTAT--GACATTTAATATCT--T--------CAA-----C-GAN--------TCGATACGCG-T-GCAA-TTTTGTACCCGGGTATA-AA---C-AT----GTAT-------------TG-------------A------------A-------------A-------------TCGTGACCGTCTCGGC-CAATCGAAAATGGGA-TAGG-C-TGG-T-TACTTATTGACTCGCCCN-CGTA
Reference ( gi|3 ) : CCTAATCTT-CTACCTGAATTCGTGTCTATCAGGGTAT-A----------C-CAA-ATCCC-GAACTTTCTTGCGT-ATT-TCCT-CGTTGGTGCA--TGGCG-TCTAGTGGG---TTT-CGAGACCTG-GCTTCATCTTCTA----AAGACTGT-----TCTACGGCGT-----T-------T---GA--------------A-------------ATT----TACCC-----------TGAGCA-T-------------AAG-ATGGTGCAGAGGGACCCATAAAC--ATTGGCTAATTA-ACTCG--CCAT---T-T------TTTCCTTGCCTGTT-TCAC----C-T----TTTAAAT-ACAAGCACCGAATT--ACATGTAT---ATATAGCACGATACTCAACTTTTAGATGAA----AGGCGTACCTGTGC-ATCACTAGTCCT-ATTTAT-AGACATTGAATATCT--C--------CAA-----T-GAG--------TCGATGCGCG-T-GCAA-TTTTGTACCCGGGTATACAA---C-AT----GTAT-------------TG-------------A------------A-------------A-------------TCGTGACTGTTTCGGC-CAATCGAAAATGGGA-TATG-C-TGG-T-TACTTATTGACTCGCCCA-TGTAG
gi|2 : CCTAATCTT-CTACCTGAATTCG-GTCTATCAGGGTAT-A----------C-CAA-ATCCC-GAACTTTCTTGCGT-ATT-TCCT-CGTTGGTGCA--TGGCG-TCTAGTGGG---TTT-CGAGACCTG-GCTTCATCTTCTA----AAGACTGT-----TCTACGGCGT-----T-------T---GA--------------A-------------ATT----TACCC-----------TGAGCA-T-------------AAG-ATGGTGCAGAGGGACCCATAAAC--ATTGGCTAATTA-ACTCG--CCAT---T-T------TTTCCTTGCCTGTT-TCAC----C-T----TTTAAAT-ACAAGCACCGAATT--ACATGTAT---ATATAGCACGATACTCAACTTTTAGATGAA----AGGCGTACCTGTGC-ATCACTAGTCCT-ATTTAT-AGACATTGAATATCT--C--------CAA-----T-GAG--------TCGATGCGCG-T-GCAA-TTTTGTACCCGGGTATACAA---C-AT----GTAT-------------TG-------------A------------A-------------A-------------TCGTGACTGTTTCGGC-CAATCGAAAATGGGA-TATG-CTTGG-T-TACTTATTGACTCGCCCATTGTA
gi|7 : CCTAATCTT-CTACCTGAATTCGT-TCTATCAGG-TAT-A----------C-CAA--TCCC-GAACTTTCTTGCGT-ATT-TCCT-CGTTGGTGCA--TGGCG-TCTAGTGGG---TTTTCGAGACCTG-GCTTCATCTTCTA----AAGACT-------TCTACGGCGT-----T-------T---GA--------------A-------------ATT----TACCC-----------TGAGCA-T-------------AAG-ATGGTGCAGAGGGACCCATAAAC--ATTGGCTAATTA-ACTCG--C-AT---T-T------TTTCCTTGCCTGTT-TCAC----C-T----TTTAAAT-ACAAGCACCGAATT--ACATGTAT---ATATAGCACGATACTCAACTTT-AGATGAA----AGGCGTACCTGTGC-ATCACTAGTCCT-ATTTATTAGACATTGAATATCT--C--------CAA-----T-GAG--------TCGATGCGCG-T-GCAA-TTTTGTACCCGGGTATACAA---C-AT----GTAT-------------TG-------------A------------A-------------A-------------TCGTGACTGTTTCGGC-CAATCG
gi|4 : CCTATTCTT-TCACCAGAATTCGA--CTATTAGAGTAC-AACATATCCCCCGCAATATCCC-GATCTTTCTTACAC-ATT-TCTT-TGTCAGTG------GCA-TCCAGTGGG---CGC-CCAGTCCTG-GCTTCATCATCTA----AATAC-GT-----TCTACCGCTT-----T-------T---GA--------------ATTCCCTTCCCAGAATC----TAACC-----------TGAGTA-T-------------AAA-AAGGCACAGAAAGACCCATAAAC--ATCGG--A--TA-ACTCG--CCAT---G-TA-----TTTCCTTGCCTGAT-TTAC----CTT----TTTCAAT-AAAAGCACCAAATT--AC-------------AGCATGGTACTCAAC-TTTAGTTGAA----AAGCATGTCTTTGC-ATCA
gi|15 : atgCCTAATCTTTCTACCTGAATTCG-GTCTATCAGG-TAT-A----------C-CAA-ATCCC-GAACTTTCTTGCGT-ATT-TCCT-CGTTGGTGCA--TGGCG-TCTAGTGGG---acgcgtgcaattttgtacccaggtataaaacatgtatcgaagcaaggcaggaaaatcgtaaccgtctcggtcaatcgaaaatgggataggctggacacttattgacgcgccctcgtata
gi|6 : TATTCTT-TTACCTGAATTC--GCCTAAC-GAGTAT-G------------CAG-CTCCA-GAACGTTCATACAC-ATTATCTT-AATCAG------TGACA-TTTGTTGGG-----G-CCAAA-CTG-ACTCCAT-TTCTA----AAGATT-T-----TCTAACGTGTATATAT-------TCCCAG--------------A-------------ATA----TA-CC-----------TGAGCA-A-------------AAG-ATGGTACAGA-AGACCCATTAACATATTG------TA-CCTCG--CCGT---G-TA-----TTTCCTTGCATCTT-TTAC----C-T----ATCAAAT-TCA------GAATT--A--------------AGCAC--CACTCAAC-ATTAGATGAA----AAATG--GCTTTCA-ATTATTAACCAT-G-TTAT----CATTTAATAAAT--TAGA-----GAA-----T-GAC--------TC-ATACGCG-T-ACAAGTTTTGTACTCAGGAAT--AA---CTAT----GTAT-------------GG-------------A------------G-------------A--------------CGTGACCG-TCCAGCTCAACCAAAAATAGGA-TAGA-C-TGG---TACTCATTGACTGGTCC
gi|5 : tgtgctaTATTCTT-TTACCTGAATT---GCCTAAC-GAGTAT-G----------A-CAC--TCCA-GAACTT-CATACATCATTATC-----TTAATCCAGTTGACA-TTTCGTTGG---CGG-CCAGAACTGCACTCCATGTTCTA----AAGATT-------TCTAACGTGT-----TATAGTTCC---AG--------------A-------------ATA----TACCC-----------TGAGCAAC-------------AAGCATGGTACAGAAGA--CCATTAAC--AT------ATTGTAC-CGTCCCGTG--TAT------CTTCCTTGC-TCTT-TAAC----C-T---------AT--------CCAAATTCAACAT--------TA-AGCAC--CACTCAACATTCAGATGAA----AAACATGCTT---CAATTATTAACCAT-G-TTAT----CATTTAATA--------------CAA-----TAGAGACATGACCTCCATACGCG-TAACAAGTTTTGTACTCAGGAATG-AA---CTAT----GTA--------------TG-------------A------------G-------------A--------------CG-GACCG-TCCAGC-CAACCAAAAATAGGACTAAGAC-TGGTT-TACTCATTGACTGGTCCtcata
gi|9 : aTCTT-TCACCTGAATTCGC--TTATCAG---------------------A-A-CCC-GAACAGTCTAACAC-AGT-TCCT-CATC----TT--TGACA-TTCAGTGGA---CAT-CTAGGTCTG-GTTTCATTTTCTA----AAGAC-GT-----TCTACCGCTT-----T-------T---GAATTCCCTTACCCACA-------------ATT----TAACC-----------TGAACA-T-------------AAG-ATGGTGCCGA-AGACCCACAAAC--ATCCGC----TA-ACTCG--CCGTGGAT-T------TT--CTTGCCCGTT-TTAC----C-A----TTTGAAT-ACAAGTACCGAAT---------------TATAGCACAGTACTCtcat
gi|13 : tgcgctcatTCTT-CCACCAGAATTC-T-CCTATCAGAGTAT-A----------C-CAG-ATCCC-AAACTTCCTTACAC-CTT-TCTT-CGTTGG------TGGCA-TCCAGTGGG---CGT-CCAGATCTG-GCTTCATCTTCTA----AAGAC-GT-----TATACCGCGC-----T-------T---GA--------------A---------------T----TCCCC-----------Tcatt
gi|19 : tgcctgcgctattTCTT-CCACCTGAATTCGC--CTATCAGAGTAT-A----------T-CAG-ATCCC-GAACTTTCTTacccagaatttcacc
gi|1 : TGAATTCGC--CTATCAGAGTATTG----------C-CAT-ATCCCCGAACTTTCT--AGT-ATT-TTCT---TCCGTCAA--TGACAATCCAGAGGG---CGT-CCAGACCTA-GCTT-ATCTTCTATTAAGAGAC-GT-----TTCACCACGT-----T-------T----A--------------A-------------ATTCCACTACCCAGAAATTAACCTGAGCA-TTTAACCTGCAGATAAG-ATGGTGCAG-GAGACTTGCAAAC--GTTGGCTAG-----CTTG--CAGT---G-TACGGTATTTACTTGCCTGTT-TTAC----T-T----TTTAAAT-TCAAGTAC---AT------TGTACCGAATATAGCATGGTACTC-ACCTTTAGATGAA----A-GCATGCCTTTGT-ATTACTAG--CT-ATGT-T-TGCTATTCAATATCT--TGTTATATAGAA-----C-GAC--------TAGATACGTACT-GTAA-TTTTG-ACCCATATATACAATCTT-ATACTAGTAT-------------TGAAACAAGGCATGCA------------A-------------A-------------CCATGGCCGTCTC-GT-CAATCGAAAATAGGA-TAGG-C-TGG-T-TACTTATTGACTCACCCT-CGTA
gi|8 : gtctattttttttcactt-CAG-ATTTC-TAATTTTCTTACAC-ATT-AGTT-TGTTA-T-----TGGCA-TTCAGTGGG---CTT-CCAGACTTG-GCTTCATATTCTA----AAG--------------------------------------------------------------------TT----TAACC-----------TTATCA-C-------------AAG-ATGATGCAGA-AGACTCATTAAC--ATTTGC----TA-ACTCG--CGGTGAAT-T------TT--GTTGCATGTT-GCACGATAC-TCAACTTTAGATGAAAAGCAC
gi|11 : acag-CAG-ATCCC-AAACTT-CTTACAA-ACT-TCTTGCGT-AGTGTA------A-TCCAGTGGGCGTTCC-CAAAATCTG-GCT-AATCTTCTG----AAAA-TGCAAATCCCTA-----T-----C-------T----A--------------A-------------ATTA---TAGCA-----------TGATCA-T-------------AAG-ATGGTGCAGA-ATACCCACAAAC--ATCGGGTAA------CCG--CTGT---G-T------ATTTCCTGCTGGTTATTA-------T----TATAAAT--CAAGTACC-AATT--------------TAAAGCACGGTACTCAAC-CTTAGACAAT----CGG----CCTTCGC-AT--CTAGCCacctttgcgtcactagccatgtttgatatttagtatcttgaaaagagtgaattgatacgcgttcaattttgtatccaggtataaaaatgtattgcaacttgacatggtaatcgtggctcccggtcaattgaaaattatgtagacttatcaattacatgtatgtaactcaccatcg
gi|10 : TTACTC-ATT-TCTT-CGTTGGTG------GTA-TCCGGTGGG---CGT-CCAAAACTG-GCTAAATCTTCTG----AAAA-TGCAAACCCCTAC----------T-------T---AA--------------A-------------TTT----CAACA-----------TGATCA-T-------------AAG-ATGGTGCAGA-AGACCCACAAAC--ATCGGC----TA-ACTCG--CTGT---G-TA-----TTTCCTTGCCTGTT-TTAT----C-------TTAAAT-ACAAGTACC-AATT--------------TAAAGCACGGTACTCAAC-CTTAGACGAA----TAGCAGGCCTTCGC-ATCACTAGCCAT-ATTT----GACATTTAATATCT--
gi|8 : ---ATGTTGCACGATACTCAACTTT-AGATGAA----AAGCACACCTTTGC-GTCACTAGCCAT-GTTT----GATATTTAGTATCT--T--------GAAAAGAGT-GAA--------TTGATACGCG-T-TCAA-TTTTGTATCCAGGTATA-AA---A-AT----GTAT-------------TGC------------AACTTGACATGGTA-------------A-------------TCGTGGC--TCCCGGT-CAATTGAAAAT-----TATG---TAG----ACTTATCAATT---ACA-TGTA
gi|12 : acagcagatttctaattttcttacacattagtttgttattggcattcagtgggcttccagacttggcttcatattctaaagtttaaccttatcacaagatgatgcagaagactcattaacatttgctaactcgcggtgaattttgttgcTTAGACGAATAGCAGGC---CTTTTGC-ATCACTAGCCAT-ATTT----GACATTTAATATCT--TATTAGA--TAA-----C-GAC--------TTGATAGGTG-T-GCAA-TTTTGTATCCAGGTATAAAA---C-AT----GTAT-------------TG-------------A------------A-------------ACAAGGCATGAAAATCGTGACTGTCTCAGC-CAATTGGAAATGTGA-TAGG-C-TGG-T-TACATATTGACTTGCCtgtaactcaccatcg
gi|16 : cGAA----AAACATACTTTTGC-AT-ACTAGCCATGATT-----GGCATTCAATATCTTAT--------CAA-----A-GAA--------TCatcgta
gi|4 : CGCG-T-GCAA-TTTTGTACCCAGGTATAAAA---C-AT----GTAT-------------CG-------------A------------AGCAAGGCAGGAAAA-------------TCGTAACCGTCTCGGT-CAATCGAAAATGGGA-TAGG-C-TGG-A-CACTTATTGACGCGCCCT-CGTAactcgacaggctggtcactct
gi|14 : atgcctattctttcaccagaattcgactattagagtacaacatatcccccgcaatatcccgatctttcttacacatttctttgtcagtggcatccagtgggcgcccagtcctggcttcatcatctaaatacgttctaccgcttttgaattcccttcccagaatctaacctgagtataaaaaggcacagaaagacccataaacatcggataactcgccatgtatttccttgcctgatttacctttttcaataaaagcaccaaattacagcatggtactcaactttagttgaaaagcatgtctttgcatcaaTGTATCCGG-TA-AAAA---C-AT----GTATGTGAAACAAGGCATG-------------A------------A-------------AAT-----------TCGTGAC-GTC---GC-CAATTGGAAATGTGA-TAGG-C-TGG-TATACATATTGACta
gi|17 : -------------A------------A-------------A-------------TTGTGATCGTCTTGAT-CAATTGGAAATGGGA-TAGG-T-TGG-C-TACTTATGGACTCGCattgcatcgtagcata
2 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|18 ): TTTTGCATACTAGCCATGATTGGCATCAATATCTTATCAAAGAATCACTCGACAGG
Unaligned ( gi|20 ): ATGTGAATGCCTAATATATGAACTATTCTCCACCTAAAATTCGCCTA
Alignments
lowQualScore : 333 11111111111 2222222222 6666666666666666666666666666666666666666666666666666666666666666666 2222222222222 1 111111 111111 1111 66666666666666 1 22222 44444444444 1111111 111111111 1 111 7777777777777777777777777777777777777777777777777777777777777777777777
lowQualScore : 1 3 3 3 111 2 44444444444 99999 3 33 6 77 2222222222 999 2 3 7777 4444444444444444444444444444444444444444444444444444444444444444444 3 4 3 0000000000000 3 8 55 999999 1 3 1 333333 3 0 3 7777 3 1111 66 0 9 00000000000000 2 00 2 1 11 3 5 7 99999 0 1 00000000000 8888888 555555555 4 4 8 6 555 4 8888 1111111111111111111111111111111111111111111111111111111111111111111111 4 5 1 3 55 4 8888 888 444 4 1
lowQualScore : . . . . ... . ........... ..... . .. . .. .......... ... . . .... ................................................................... . . . ............. . . .. ...... . . . ...... . . . .... . .... .. . . .............. . .. . . .. . . . ..... . . ........... ....... ......... . . . . ... . .... ...................................................................... . . . . .. . .... ... ... . .
lowQualScore : 0 6 6 6 000 6 66666666666 88888 1 66 2 33 9999999999 222 3 3 1111 8888888888888888888888888888888888888888888888888888888888888888888 3 2 6 0000000000000 6 7 55 666666 9 6 0 555555 6 5 6 7777 6 4444 22 4 1 66666666666666 3 99 0 6 00 1 2 3 55555 3 6 99999999999 6666666 555555555 4 4 9 0 000 0 5555 2222222222222222222222222222222222222222222222222222222222222222222222 9 7 2 6 55 0 5555 000 222 0 0
consensus : CCTANT-CTTCC-ACCT-GAATTCGCGTCTATCAGAGTAT-A--------CCAG----ATCCC-GAACTTTCTTACG-CATT-TCCT--CGTC-GGTG-CATGGCATCCAGTGGGCGTCC---AGACCTG-GCTTCATCTTCTA----AAGACTGT-----TCTA--CCGCGT-----T-------T---------------GAA--------------ATT-TANCCTGAGCA-T-------------AAG-ATGGTGCAGAGAGACCCATAAACATCGGCTAA-TAAC-TCGCCGTGTA-----T-TTCCTTGCCTGTT-TTAC----C-T----TTTAAAT-ACAAGCACCGAAT--TAC--------ATATAGCACGGTACTCAAC-TTTAGATGAAAAGCGTGCCTTT-GCATCACTAGCCAT-ATTTAT--GACATTNAATATCT--T--------CAA-----T-GA--------NTCGATACGCG-T-GCAA-TTTTGTACCCGGGTATACAA---C-AT----GTAT-------------TG-------------A------------A-------------A-------------TCGTGACCGTCTCGGC-CAATCGAAAATGGGAT--AGGC-T----GG-T-TAC-T-TAT-TGACTCGCCCTCGTA
Reference ( family-1452 ) : CCTANT-CTTCC-ACCT-GAATTCGCGCCTATCAGAGTAT-A--------CCAG----ATCCC-GAACTTTCTTACG-CATT-TCCT--CGTC-GGTG-CATGGCATCCAGTGGGCGTCC---AGACCTG-GCTTCATCTTCTA----AAGACTGT-----TCTA--CCGCGT-----T-------T---------------GAA--------------ATT-TANCCTGAGCA-T-------------AAG-ATGGTGCAGAGAGACCCATAAACATCGGCTAA-TAAC-TCGCCGTNTA-----T-TTCCTTGCCTGTT-TTAC----C-T----TTTAAAT-ACAAGCACCGAAT--TAC-----T--ATATAGCACGGTACTCAAC-TTTAGACGAAAAGCGTGCCTTT-GCATCACTAGCCAT-ATTTAT--GACATTTAATATCT--T--------CAA-----C-GA--------NTCGATACGCG-T-GCAA-TTTTGTACCCGGGTATA-AA---C-AT----GTAT-------------TG-------------A------------A-------------A-------------TCGTGACCGTCTCGGC-CAATCGAAAATGGGAT--AGGC-T----GG-T-TAC-T-TAT-TGACTCGCCCNCGTA
gi|1 : T-TTTTC-ACTTTGAATTCGC--CTATCAGAGTATTG--------CCAT----ATCCCCGAACTTTCT-A-G-TATT-TTCTTCCGTC-AATGACA----ATCCAGAGGGCGTCC---AGACCTA-GCTT-ATCTTCTATTAAGAGAC-GT-----TTCA--CCACGT-----T-------TAAATTCCACTACCCAGAA--------------ATT--AACCTGAGCA-TTTAACCTGCAGATAAG-ATGGTGCAG-GAGACTTGCAAACGTTGGCTAG----C-TTGCAGTGTACGGTAT-TTACTTGCCTGTT-TTAC----T-T----TTTAAAT-TCAAGTAC---ATTGTAC-----CGAATATAGCATGGTACTCACC-TTTAGATG-AAAGCATGCCTTT-GTATTACTAGCTAT-GTT--T--GCTATTCAATATCT--TGTTATATAGAA-----C-GA--------CTAGATACGTACT-GTAA-TTTTG-ACCCATATATACAATCTT-ATACTAGTAT-------------TGAAACAAGGCATGCA------------A-------------A-------------CCATGGCCGTCTC-GT-CAATCGAAAATAGGAT--AGGC-T----GG-T-TAC-T-TAT-TGACTCACCCTCGTA
gi|10 : gtctatttTTACT-CATT-TCTT--CGTT-GGTG-----GTATCCGGTGGGCGTCC---AAAACTG-GCTAAATCTTCTG----AAAA-TGCAAACCCCTA--C----------T-------T---------------AAA--------------TTT-CAACATGATCA-T-------------AAG-ATGGTGCAGA-AGACCCACAAACATCGGCTAA----C-TCGCTGTGTA-----T-TTCCTTGCCTGTT-TTAT----C-T----T--AAAT-ACAAGTACC-AAT--T-----------TAAAGCACGGTACTCAAC-CTTAGACGAATAGCAGGCCTTC-GCATCACTAGCCAT-ATT--T--GACATTTAATATCT--
gi|11 : CAG----ATCCC-AAACTT-CTTACA-AACT-TCTTG-CGT--AGTG-TA----ATCCAGTGGGCGTTCCCAAAATCTG-GC-TAATCTTCTG----AAAA-TG-------CAAATCCCTAT-----C-------T----------------AA--------------ATTATAGCATGATCA-T-------------AAG-ATGGTGCAGA-ATACCCACAAACATCGG---G-TAAC--CGCTGTGTA-----T-TTCC-TGCTGGTTATTA-------T----TATAAAT--CAAGTACC-AAT--T-----------TAAAGCACGGTACTCAAC-CTTAGAC---AATCG-GCCTTC-GCAT--CTAGCC
gi|12 : TTAGACGAATAGCAGGCCTTTTGCATCACTAGCCAT-ATTT----GACATTTAATATCT--TATTAGA--TAA-----C-GA--------CTTGATAGGTG-T-GCAA-TTTTGTATCCAGGTATA-AAA--C-AT----GTAT-------------TG-------------A------------A-------------ACAAGGCATGAAAATCGTGACTGTCTCAGC-CAATTGGAAATGTGAT--AGGC-T----GG-T-TAC-A-TAT-TGACTTGCCATCGTA
gi|13 : cCTATTTCTTCC-ACCA-GAATTCTC--CTATCAGAGTAT-A--------CCAG----ATCCC-AAACTTCCTTACA-CCTT-TCTT--CGTT-GGTG-----GCATCCAGTGGGCGTCC---AGATCTG-GCTTCATCTTCTA----AAGAC-GT-----TATA--CCGCGC-----T-------T---------------GAA----------------T-TCCCCT
gi|14 : tgcctgcgTGTATCCGG-TAAA-AA---C-AT----GTATGTGAAACAAGGCATG-------------A------------A-------------AAT-----------TCGTGAC-GTC---GC-CAATTGGAAATGTGAT--AGGC-T----GG-TATAC-A-TAT-TGACacccagaatttcacc
gi|15 : CCTAAT-CTTTCTACCT-GAATTCG-GTCTATCAG-GTAT-A--------CCAA----ATCCC-GAACTTTCTTGCG-TATT-TCCT--CGTT-GGTG-CATGGCGTCTAGTGGGattgcatcgtagcata
gi|16 : GAAAAACATACTTTT-GCAT-ACTAGCCATGATT-----GGCATTCAATATCTTAT--------CAA-----A-GA--------ATC
gi|17 : -------------A------------A-------------A-------------TTGTGATCGTCTTGAT-CAATTGGAAATGGGAT--AGGT-T----GG-C-TAC-T-TAT-GGACTCGCACTCGTAactcgacaggctggtcactct
gi|18 : atTTT-GCAT-ACTAGCCATGAT---T--GGCA-TCAATATCTTAT--------CAA-----A-GA--------ATCt
gi|19 : tT-CTTCC-ACCT-GAATTCGC--CTATCAGAGTAT-A--------TCAG----ATCCC-GAACTTTCTTactcgacagg
gi|2 : CCTAAT-CTTCT-ACCT-GAATTCG-GTCTATCAGGGTAT-A--------CCAA----ATCCC-GAACTTTCTTGCG-TATT-TCCT--CGTT-GGTG-CATGGCGTCTAGTGGGTTTCG---AGACCTG-GCTTCATCTTCTA----AAGACTGT-----TCTA--CGGCGT-----T-------T---------------GAA--------------ATT-TACCCTGAGCA-T-------------AAG-ATGGTGCAGAGGGACCCATAAACATTGGCTAATTAAC-TCGCCATTT------T-TTCCTTGCCTGTT-TCAC----C-T----TTTAAAT-ACAAGCACCGAAT--TACATGTAT--ATATAGCACGATACTCAACTTTTAGATGAAAGGCGTACCTGT-GCATCACTAGTCCT-ATTTATA-GACATTGAATATCT--C--------CAA-----T-GA--------GTCGATGCGCG-T-GCAA-TTTTGTACCCGGGTATACAA---C-AT----GTAT-------------TG-------------A------------A-------------A-------------TCGTGACTGTTTCGGC-CAATCGAAAATGGGAT--ATGCTT----GG-T-TAC-T-TAT-TGACTCGCCC
gi|3 : CCTAAT-CTTCT-ACCT-GAATTCGTGTCTATCAGGGTAT-A--------CCAA----ATCCC-GAACTTTCTTGCG-TATT-TCCT--CGTT-GGTG-CATGGCGTCTAGTGGGTTTCG---AGACCTG-GCTTCATCTTCTA----AAGACTGT-----TCTA--CGGCGT-----T-------T---------------GAA--------------ATT-TACCCTGAGCA-T-------------AAG-ATGGTGCAGAGGGACCCATAAACATTGGCTAATTAAC-TCGCCATTT------T-TTCCTTGCCTGTT-TCAC----C-T----TTTAAAT-ACAAGCACCGAAT--TACATGTAT--ATATAGCACGATACTCAACTTTTAGATGAAAGGCGTACCTGT-GCATCACTAGTCCT-ATTTATA-GACATTGAATATCT--C--------CAA-----T-GA--------GTCGATGCGCG-T-GCAA-TTTTGTACCCGGGTATACAA---C-AT----GTAT-------------TG-------------A------------A-------------A-------------TCGTGACTGTTTCGGC-CAATCGAAAATGGGAT--ATGC-T----GG-T-TAC-T-TAT-TGACTCGCCCATGTAattgta
gi|4 : CCTATT-CTTTC-ACCA-GAATTCGA--CTATTAGAGTAC-AACATATCCCCCGCAATATCCC-GATCTTTCTTACA-CATT-TCTT--TGTC-AGTG-----GCATCCAGTGGGCGCCC---AGTCCTG-GCTTCATCATCTA----AATAC-GT-----TCTA--CCGCTT-----T-------T---------------GAATTCCCTTCCCAGA-ATC-TAACCTGAGTA-T-------------AAA-AAGGCACAGAAAGACCCATAAACATCGG---A-TAAC-TCGCCATGTA-----T-TTCCTTGCCTGAT-TTAC----CTT----TTTCAAT-AAAAGCACCAAAT--TAC------------AGCATGGTACTCAAC-TTTAGTTGAAAAGCATGTCTTT-GCATCAg
gi|4 : atgACGCG-T-GCAA-TTTTGTACCCAGGTATA-AAA--C-AT----GTAT-------------CG-------------A------------AGCAAGGCAGGAAAA-------------TCGTAACCGTCTCGGT-CAATCGAAAATGGGAT--AGGC-T----GG-A-CAC-T-TAT-TGACGCGCCCTCGTAacgcgtgcaattttgtacccaggtataaaacatgtatcgaagcaaggcaggaaaatcgtaaccgtctcggtcaatcgaaaatgggataggctggacacttattgacgcgccctcgtata
gi|5 : atgcctattctttcaccagaattcgactattagagtacaacatatcccccgcaatatcccgatctttcttacacatttctttgtcagtggcatccagtgggcgcccagtcctggcttcatcatctaaatacgttctaccgcttttgaattcccttcccagaatctaacctgagtataaaaaggcacagaaagacccataaacatcggataactcgccatgtatttccttgcctgatttacctttttcaataaaagcaccaaattacagcatggtactcaactttagttgaaaagcatgtctttgcatcaTATT-CTTTT-ACCT-GAATT---GCCTAAC-GAGTAT-G--------ACAC-----TCCA-GAACTT-CATACATCATTATCTT--AATCCAGT----TGACATTTCGTTGGCGGCC---AGAACTGCACTCCATGTTCTA----AAGATT-------TCTA--ACGTGT-----TATAGTTCC---------------AGA--------------ATA-TACCCTGAGCAAC-------------AAGCATGGTACAGA-AGACC-ATTAACATA---TTG-TACCGTC-CCGTGTA-----TCTTCCTTGC-TCTT-TAAC----C-TA---TCCAAAT-TCAA----C--AT--TA-------------AGCAC--CACTCAACATTCAGATGAAAAACATGC--TT-CAATTATTAACCAT-GTT-AT----CATTTAATA--------------CAA-----TAGAGACATGACCTCCATACGCG-TAACAAGTTTTGTACTCAGGAATG-AA---CTAT----GTA--------------TG-------------A------------G-------------A--------------CG-GACCGTC-CAGC-CAACCAAAAATAGGACTAAGAC-T----GGTT-TAC-T-CAT-TGACTGGTCCTCATta
gi|6 : aTATT-CTTTT-ACCT-GAATT--CGCCTAAC-GAGTAT-G---------CAG----CTCCA-GAACGTTCATACA-CATTATCTT--AATC-AG-----TGACATTTGTTGGG-G-CC---AAA-CTG-ACTCCAT-TTCTA----AAGATT-T-----TCTA--ACGTGTATATAT-------TCCC------------AGA--------------ATA-TA-CCTGAGCA-A-------------AAG-ATGGTACAGA-AGACCCATTAACAT---ATTG-TACC-TCGCCGTGTA-----T-TTCCTTGCATCTT-TTAC----C-T----ATCAAAT-TCA------GAAT--TA-------------AGCAC--CACTCAAC-ATTAGATGAAAA--ATGGCTTT-CAATTATTAACCAT-G-TTAT----CATTTAATAAAT--TAGA-----GAA-----T-GA--------CTC-ATACGCG-T-ACAAGTTTTGTACTCAGGAATA-AC---T-AT----GTAT-------------GG-------------A------------G-------------A--------------CGTGACCGTC-CAGCTCAACCAAAAATAGGAT--AGAC-T----GG---TAC-T-CAT-TGACTGGTCCTCATA
gi|7 : tgtgctaCCTAAT-CTTCT-ACCT-GAATTCGT-TCTATCAG-GTAT-A--------CCA-----ATCCC-GAACTTTCTTGCG-TATT-TCCT--CGTT-GGTG-CATGGCGTCTAGTGGGTTTTCG--AGACCTG-GCTTCATCTTCTA----AAGACT-------TCTA--CGGCGT-----T-------T---------------GAA--------------ATT-TACCCTGAGCA-T-------------AAG-ATGGTGCAGAGGGACCCATAAACATTGGCTAATTAAC-TCG-CATTT------T-TTCCTTGCCTGTT-TCAC----C-T----TTTAAAT-ACAAGCACCGAAT--TACATGTAT--ATATAGCACGATACTCAAC-TTTAGATGAAAGGCGTACCTGT-GCATCACTAGTCCT-ATTTATTAGACATTGAATATCT--C--------CAA-----T-GA--------GTCGATGCGCG-T-GCAA-TTTTGTACCCGGGTATACAA---C-AT----GTAT-------------TG-------------A------------A-------------A-------------TCGTGACTGTTTCGGC-CAATCG
gi|8 : CAG----ATTTC-TAATTTTCTTACA-CATT-AGTT--TGTT--AT----TGGCATTCAGTGGGCTTCC---AGACTTG-GCTTCATATTCTA----AAG---------------------------------------------------------------------TT-TAACCTTATCA-C-------------AAG-ATGATGCAGA-AGACTCATTAACATTTGC----TAAC-TCGCGGTGAA-----T-TTTGTTGCATGTT-GCACGATAC-TCAACTTTAGATGAAAAGCAC
gi|8 : acag--ATGTTGCACGATACTCAAC-TTTAGATGAAAAGCACACCTTT-GCGTCACTAGCCAT-GTT--T--GATATTTAGTATCT--T--------GAAAAGAGT-GA--------ATTGATACGCG-T-TCAA-TTTTGTATCCAGGTATA-AA---A-AT----GTAT-------------TGC------------AACTTGACATGGTA-------------A-------------TCGTGGC--TCCCGGT-CAATTGAAAATTATGT--AGAC-TTATCAA-T-TACATGTATGTAACTCACCATCGacctttgcgtcactagccatgtttgatatttagtatcttgaaaagagtgaattgatacgcgttcaattttgtatccaggtataaaaatgtattgcaacttgacatggtaatcgtggctcccggtcaattgaaaattatgtagacttatcaattacatgtatgtaactcaccatcg
gi|9 : acagcagatttctaattttcttacacattagtttgttattggcattcagtgggcttccagacttggcttcatattctaaagtttaaccttatcacaagatgatgcagaagactcattaacatttgctaactcgcggtgaattttgttgcATT-CTTTC-ACCT-GAATTCGC--TTATCAGAA-----------------------CCC-GAACAGTCTAACA-CAGT-TCCT--CATC------TTTGACATTCAGTGGACATCT---AGGTCTG-GTTTCATTTTCTA----AAGAC-GT-----TCTA--CCGCTT-----T-------T---------------GAATTCCCTTACCCACAATT-TAACCTGAACA-T-------------AAG-ATGGTGCCGA-AGACCCACAAACATCCGCTAA----C-TCGCCGTGGA-----T-TTTCTTGCCCGTT-TTAC----C-A----TTTGAAT-ACAAGTACCGAAT--------------TATAGCACAGTACTC
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|20 ): ATGTGAATGCCTAATATATGAACTATTCTCCACCTAAAATTCGCCTA
Alignments
lowQualScore : 333 11111111111 2222222222 6666666666666666666666666666666666666666666666666666666666666666666 2222222222222 1 1111111 111111 1111 555555555555555555555 1 222222222 44444444444 1111111 111111111 1 88888888888888888888888888888888888888888888888888888888
lowQualScore : 1 3 3 3 333 2 44444444444 99999 3 33 6 77 2222222222 999 2 3 7777 4444444444444444444444444444444444444444444444444444444444444444444 3 4 3 0000000000000 3 8 55 9999999 1 3 2 333333 3 0 3 7777 1111 3 66 0 9 000000000000000000000 00 2 11 3 5 444444444 0 1 00000000000 3333333 555555555 4 4 8 0 99999 8888 4 00000000000000000000000000000000000000000000000000000000 0 5 1 3 55 4 8888 888 444 4 4 4
lowQualScore : . . . . ... . ........... ..... . .. . .. .......... ... . . .... ................................................................... . . . ............. . . .. ....... . . . ...... . . . .... .... . .. . . ..................... .. . .. . . ......... . . ........... ....... ......... . . . . ..... .... . ........................................................ . . . . .. . .... ... ... . . .
lowQualScore : 0 6 6 6 888 6 66666666666 88888 1 66 2 33 9999999999 222 3 3 1111 8888888888888888888888888888888888888888888888888888888888888888888 3 2 6 0000000000000 6 7 55 6666666 9 6 0 555555 6 5 6 7777 4444 6 22 4 1 555555555555555555555 99 0 00 1 2 111111111 3 0 99999999999 2222222 555555555 4 4 9 0 11111 5555 0 66666666666666666666666666666666666666666666666666666666 4 7 2 6 55 0 5555 000 222 0 0 0
consensus : CCTANT-CTTCC-ACCT-GAATTCGCGTCTATCAGAGTAT-A--------CCAG----ATCCC-GAACTTTCTTACG-CATT-TCCT--CGTC-GGTG-CATGGCATCCAGTGGGCGTCC---AGACCTG-GCTTCATCTTCTA----AAGACTGT-----TCTA--CCGCGT-----T-------T---------------GAA--------------ATT-TANCCTGAGCA-T-------------AAG-ATGGTGCAGAGAGACCCATAAACATCGGCTAA-T-AAC-TCGCCGTGTA-----T-TTCCTTGCCTGTT-TTAC----CT----TTT-AAAT-ACAAGCACCGAAT--TAC------AT------ATAGCACGGTACTCAAC-TTTAGATGAAAAGCGTGCCTTT-GCATCACTAGCCAT-ATTTAT--GACATTNAATATCT--T--------CAA-----T-GA--------NTCGATACGCG-T-GCAA-TTTTGTACCCGGGTATACAA---C-AT----GTAT-TG-------------A------------A-------------A--------------TCGTGACCGTCTCGGC-CAATCGAAAATGGGAT--AGGC-T----GG-T-TAC-T-TAT-TGAC-TCGCCC-TCGTA
Reference ( family-1452 ) : CCTANT-CTTCC-ACCT-GAATTCGCGTCTATCAGAGTAT-A--------CCAG----ATCCC-GAACTTTCTTACG-CATT-TCCT--CGTC-GGTG-CATGGCATCCAGTGGGCGTCC---AGACCTG-GCTTCATCTTCTA----AAGACTGT-----TCTA--CCGCGT-----T-------T---------------GAA--------------ATT-TANCCTGAGCA-T-------------AAG-ATGGTGCAGAGAGACCCATAAACATCGGCTAA-T-AAC-TCGCCGTGTA-----T-TTCCTTGCCTGTT-TTAC----CT----TTT-AAAT-ACAAGCACCGAAT--TAC------AT------ATAGCACGGTACTCAAC-TTTAGATGAAAAGCGTGCCTTT-GCATCACTAGCCAT-ATTTAT--GACATTNAATATCT--T--------CAA-----T-GA--------NTCGATACGCG-T-GCAA-TTTTGTACCCGGGTATACAA---C-AT----GTAT-TG-------------A------------A-------------A--------------TCGTGACCGTCTCGGC-CAATCGAAAATGGGAT--AGGC-T----GG-T-TAC-T-TAT-TGAC-TCGCCC-TCGTA
gi|1 : T-TTTTC-ACTTTGAATTCGC--CTATCAGAGTATTG--------CCAT----ATCCCCGAACTTTCT-A-G-TATT-TTCTTCCGTC-AATGACA----ATCCAGAGGGCGTCC---AGACCTA-GCTT-ATCTTCTATTAAGAGAC-GT-----TTCA--CCACGT-----T-------TAAATTCCACTACCCAGAA--------------ATT--AACCTGAGCA-TTTAACCTGCAGATAAG-ATGGTGCAG-GAGACTTGCAAACGTTGGCTAG-----C-TTGCAGTGTACGGTAT-TTACTTGCCTGTT-TTAC----TT----TTT-AAAT-TCAAGTAC---ATTGTACCGA---AT------ATAGCATGGTACTCACC-TTTAGATG-AAAGCATGCCTTT-GTATTACTAGCTAT-GTT--T--GCTATTCAATATCT--TGTTATATAGAA-----C-GA--------CTAGATACGTACT-GTAA-TTTTG-ACCCATATATACAATCTT-ATACTAGTAT-TGAAACAAGGCATGCA------------A-------------A--------------CCATGGCCGTCTC-GT-CAATCGAAAATAGGAT--AGGC-T----GG-T-TAC-T-TAT-TGAC-TCACCC-TCGTA
gi|10 : gtctatttTTACT-CATT-TCTT--CGTT-GGTG-----GTATCCGGTGGGCGTCC---AAAACTG-GCTAAATCTTCTG----AAAA-TGCAAACCCCTA--C----------T-------T---------------AAA--------------TTT-CAACATGATCA-T-------------AAG-ATGGTGCAGA-AGACCCACAAACATCGGCTAA-----C-TCGCTGTGTA-----T-TTCCTTGCCTGTT-TTAT----CT----T---AAAT-ACAAGTACC-AAT--T---------T------AAAGCACGGTACTCAAC-CTTAGACGAATAGCAGGCCTTC-GCATCACTAGCCAT-ATT--T--GACATTTAATATCT--
gi|11 : CAG----ATCCC-AAACTT-CTTACA-AACT-TCTTG-CGT--AGTG-TA----ATCCAGTGGGCGTTCCCAAAATCTG-GC-TAATCTTCTG----AAAA-TG-------CAAATCCCTAT-----C-------T----------------AA--------------ATTATAGCATGATCA-T-------------AAG-ATGGTGCAGA-ATACCCACAAACATCGG---G-T-AAC--CGCTGTGTA-----T-TTCC-TGCTGGTTATTA------T----TAT-AAAT--CAAGTACC-AAT--T---------T------AAAGCACGGTACTCAAC-CTTAGAC---AATCG-GCCTTC-GCAT--CTAGCC
gi|12 : TTAGACGAATAGCAGGCCTTTTGCATCACTAGCCAT-ATTT----GACATTTAATATCT--TATTAGA--TAA-----C-GA--------CTTGATAGGTG-T-GCAA-TTTTGTATCCAGGTATAAAA---C-AT----GTAT-TG-------------A------------A-------------ACAAGGCATGAAAA-TCGTGACTGTCTCAGC-CAATTGGAAATGTGAT--AGGC-T----GG-T-TAC-A-TAT-TGAC-TTGCCA-TCGTA
gi|13 : cCTATTTCTTCC-ACCA-GAATTCTC--CTATCAGAGTAT-A--------CCAG----ATCCC-AAACTTCCTTACA-CCTT-TCTT--CGTT-GGTG-----GCATCCAGTGGGCGTCC---AGATCTG-GCTTCATCTTCTA----AAGAC-GT-----TATA--CCGCGC-----T-------T---------------GAA----------------T-TCCCCT
gi|14 : tgcctgcgTGTATCCGG-TA-AAAA---C-AT----GTATGTG-------------A------------A-------------ACAAGGCATGAAAATTCGTGA-CGTC---GC-CAATTGGAAATGTGAT--AGGC-T----GG-TATAC-A-TAT-TGACATTG-CA-TCGTAacccagaatttcacc
gi|15 : CCTAAT-CTTTCTACCT-GAATTCG-GTCTATCAG-GTAT-A--------CCAA----ATCCC-GAACTTTCTTGCG-TATT-TCCT--CGTT-GGTG-CATGGCGTCTAGTGGGgcata
gi|16 : GAAAAACATACTTTT-GCAT-ACTAGCCATGAT---T--GGCATTCAATATCTTAT--------CAA-----A-GA--------ATC
gi|17 : -------------A------------A-------------A--------------TTGTGATCGTCTTGAT-CAATTGGAAATGGGAT--AGGT-T----GG-C-TAC-T-TAT-GGAC-TCGCAC-TCGTAactcgacaggctggtcactct
gi|18 : atTTT-GCAT-ACTAGCCATGAT---T--GGCA-TCAATATCTTAT--------CAA-----A-GA--------ATCt
gi|19 : tT-CTTCC-ACCT-GAATTCGC--CTATCAGAGTAT-A--------TCAG----ATCCC-GAACTTTCTTactcgacagg
gi|2 : CCTAAT-CTTCT-ACCT-GAATTCG-GTCTATCAGGGTAT-A--------CCAA----ATCCC-GAACTTTCTTGCG-TATT-TCCT--CGTT-GGTG-CATGGCGTCTAGTGGGTTTCG---AGACCTG-GCTTCATCTTCTA----AAGACTGT-----TCTA--CGGCGT-----T-------T---------------GAA--------------ATT-TACCCTGAGCA-T-------------AAG-ATGGTGCAGAGGGACCCATAAACATTGGCTAATT-AAC-TCGCCATTT------T-TTCCTTGCCTGTT-TCAC----CT----TTT-AAAT-ACAAGCACCGAAT--TACATGTATAT------ATAGCACGATACTCAACTTTTAGATGAAAGGCGTACCTGT-GCATCACTAGTCCT-ATTTATA-GACATTGAATATCT--C--------CAA-----T-GA--------GTCGATGCGCG-T-GCAA-TTTTGTACCCGGGTATACAA---C-AT----GTAT-TG-------------A------------A-------------A--------------TCGTGACTGTTTCGGC-CAATCGAAAATGGGAT--ATGCTT----GG-T-TAC-T-TAT-TGAC-TCGCCCATTGTA
gi|3 : CCTAAT-CTTCT-ACCT-GAATTCGTGTCTATCAGGGTAT-A--------CCAA----ATCCC-GAACTTTCTTGCG-TATT-TCCT--CGTT-GGTG-CATGGCGTCTAGTGGGTTTCG---AGACCTG-GCTTCATCTTCTA----AAGACTGT-----TCTA--CGGCGT-----T-------T---------------GAA--------------ATT-TACCCTGAGCA-T-------------AAG-ATGGTGCAGAGGGACCCATAAACATTGGCTAATT-AAC-TCGCCATTT------T-TTCCTTGCCTGTT-TCAC----CT----TTT-AAAT-ACAAGCACCGAAT--TACATGTATAT------ATAGCACGATACTCAACTTTTAGATGAAAGGCGTACCTGT-GCATCACTAGTCCT-ATTTATA-GACATTGAATATCT--C--------CAA-----T-GA--------GTCGATGCGCG-T-GCAA-TTTTGTACCCGGGTATACAA---C-AT----GTAT-TG-------------A------------A-------------A--------------TCGTGACTGTTTCGGC-CAATCGAAAATGGGAT--ATGC-T----GG-T-TAC-T-TAT-TGAC-TCGCCC-ATGTA
gi|4 : CCTATT-CTTTC-ACCA-GAATTCGA--CTATTAGAGTAC-AACATATCCCCCGCAATATCCC-GATCTTTCTTACA-CATT-TCTT--TGTC-AGTG-----GCATCCAGTGGGCGCCC---AGTCCTG-GCTTCATCATCTA----AATAC-GT-----TCTA--CCGCTT-----T-------T---------------GAATTCCCTTCCCAGA-ATC-TAACCTGAGTA-T-------------AAA-AAGGCACAGAAAGACCCATAAACATCGG---A-T-AAC-TCGCCATGTA-----T-TTCCTTGCCTGAT-TTAC----CT----TTTTCAAT-AAAAGCACCAAAT--TAC------A----------GCATGGTACTCAAC-TTTAGTTGAAAAGCATGTCTTT-GCATCAg
gi|4 : atgACGCG-T-GCAA-TTTTGTACCCAGGTATAAAA---C-AT----GTAT-CG-------------A------------AGCAAGGCAGGAAAA--------------TCGTAACCGTCTCGGT-CAATCGAAAATGGGAT--AGGC-T----GG-A-CAC-T-TAT-TGAC-GCGCCC-TCGTAacgcgtgcaattttgtacccaggtataaaacatgtatcgaagcaaggcaggaaaatcgtaaccgtctcggtcaatcgaaaatgggataggctggacacttattgacgcgccctcgtata
gi|5 : atgcctattctttcaccagaattcgactattagagtacaacatatcccccgcaatatcccgatctttcttacacatttctttgtcagtggcatccagtgggcgcccagtcctggcttcatcatctaaatacgttctaccgcttttgaattcccttcccagaatctaacctgagtataaaaaggcacagaaagacccataaacatcggataactcgccatgtatttccttgcctgatttacctttttcaataaaagcaccaaattacagcatggtactcaactttagttgaaaagcatgtctttgcatcaTATT-CTTTT-ACCT-GAATT---GCCTAAC-GAGTAT-G--------ACAC-----TCCA-GAACTT-CATACATCATTATCTT--AATCCAGT----TGACATTTCGTTGGCGGCC---AGAACTGCACTCCATGTTCTA----AAGATT-------TCTA--ACGTGT-----TATAGTTCC---------------AGA--------------ATA-TACCCTGAGCAAC-------------AAGCATGGTACAGA-AGACC-ATTAACATA---TTG-T-ACCGTC-CCGTGTA-----TCTTCCTTGC-TCTT-TAAC----CTA---TCC-AAAT-TCAA----C--AT--TA-----------------AGCAC--CACTCAACATTCAGATGAAAAACATGC--TT-CAATTATTAACCAT-G-TTAT----CATTTAATA--------------CAA-----TAGAGACATGACCTCCATACGCG-TAACAAGTTTTGTACTCAGGAATG-AA---CTAT----GTA--TG-------------A------------G-------------A---------------CG-GACCGTC-CAGC-CAACCAAAAATAGGACTAAGAC-T----GGTT-TAC-T-CAT-TGAC-TGGTCC-TCATta
gi|6 : aTATT-CTTTT-ACCT-GAATTCGC--CTAAC-GAGTAT-G---------CAG----CTCCA-GAACGTTCATACA-CATTATCTT--AATC-AG-----TGACATTTGTTGGG-G-CC---AAA-CTG-ACTCCAT-TTCTA----AAGATT-T-----TCTA--ACGTGTATATAT-------TCCC------------AGA--------------ATA-TA-CCTGAGCA-A-------------AAG-ATGGTACAGA-AGACCCATTAACAT---ATTG-T-ACC-TCGCCGTGTA-----T-TTCCTTGCATCTT-TTAC----CT----ATC-AAAT-TCA------GAAT--TA-----------------AGCAC--CACTCAAC-ATTAGATGAAAA--ATGGCTTT-CAATTATTAACCAT-G-TTAT----CATTTAATAAAT--TAGA-----GAA-----T-GA--------CTC-ATACGCG-T-ACAAGTTTTGTACTCAGGAAT--AA---CTAT----GTAT-GG-------------A------------G-------------A---------------CGTGACCGTC-CAGCTCAACCAAAAATAGGAT--AGAC-T----GG---TAC-T-CAT-TGAC-TGGTCC-TCATA
gi|7 : tgtgctaCCTAAT-CTTCT-ACCT-GAATTCGT-TCTATCAG-GTAT-A--------CCA-----ATCCC-GAACTTTCTTGCG-TATT-TCCT--CGTT-GGTG-CATGGCGTCTAGTGGGTTTTCG--AGACCTG-GCTTCATCTTCTA----AAGACT-------TCTA--CGGCGT-----T-------T---------------GAA--------------ATT-TACCCTGAGCA-T-------------AAG-ATGGTGCAGAGGGACCCATAAACATTGGCTAA-TTAAC-TCGC-ATTT------T-TTCCTTGCCTGTT-TCAC----CT----TTT-AAAT-ACAAGCACCGAAT--TAC------ATGTATATATAGCACGATACTCAAC-TTTAGATGAAAGGCGTACCTGT-GCATCACTAGTCCT-ATTTATTAGACATTGAATATCT--C--------CAA-----T-GA--------GTCGATGCGCG-T-GCAA-TTTTGTACCCGGGTATACAA---C-AT----GTAT-TG-------------A------------A-------------A--------------TCGTGACTGTTTCGGC-CAATCG
gi|8 : CAG----ATTTC-TAATTTTCTTACA-CATT-AGTT--TGTT--AT----TGGCATTCAGTGGGCTTCC---AGACTTG-GCTTCATATTCTA----AAG---------------------------------------------------------------------TT-TAACCTTATCA-C-------------AAG-ATGATGCAGA-AGACTCATTAACATTTGC----T-AAC-TCGCGGTGAA-----T-TTTGTTGCATGTT-GCACGATACTCAACTTT-AGATGAAAAGCAC
gi|8 : acagT--TGC------AT------GTTGCACGATACTCAAC-TTTAGATGAAAAGCACACCTTT-GCGTCACTAGCCAT-GTT--T--GATATTTAGTATCT--T--------GAAAAGAGT-GA--------ATTGATACGCG-T-TCAA-TTTTGTATCCAGGTATA-AA---A-AT----GTAT-TGC------------AACTTGACATGGTA-------------A--------------TCGTGGC--TCCCGGT-CAATTGAAAATTATGT--AGAC-TTATCAA-T-TACATGTATGTAAC-TCACCA-TCGacctttgcgtcactagccatgtttgatatttagtatcttgaaaagagtgaattgatacgcgttcaattttgtatccaggtataaaaatgtattgcaacttgacatggtaatcgtggctcccggtcaattgaaaattatgtagacttatcaattacatgtatgtaactcaccatcg
gi|9 : acagcagatttctaattttcttacacattagtttgttattggcattcagtgggcttccagacttggcttcatattctaaagtttaaccttatcacaagatgatgcagaagactcattaacatttgctaactcgcggtgaattttgATT-CTTTC-ACCT-GAATTCGC--TTATCAGAA-----------------------CCC-GAACAGTCTAACA-CAGT-TCCT--CATC------TTTGACATTCAGTGGACATCT---AGGTCTG-GTTTCATTTTCTA----AAGAC-GT-----TCTA--CCGCTT-----T-------T---------------GAATTCCCTTACCCACAATT-TAACCTGAACA-T-------------AAG-ATGGTGCCGA-AGACCCACAAACATCCGCTAA-----C-TCGCCGTGGA-----T-TTTCTTGCCCGTT-TTAC----CA----TTT-GAAT-ACAAGTACCGAAT------------T------ATAGCACAGTACTC
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|20 ): ATGTGAATGCCTAATATATGAACTATTCTCCACCTAAAATTCGCCTA
Alignments
lowQualScore : 333 11111111111 2222222222 6666666666666666666666666666666666666666666666666666666666666666666 2222222222222 1 1111111 111111 1111 555555555555555555555 1 222222222 44444444444 1111111 111111111 1 88888888888888888888888888888888888888888888888888888888
lowQualScore : 1 3 3 3 333 2 44444444444 99999 3 33 6 77 2222222222 999 2 3 7777 4444444444444444444444444444444444444444444444444444444444444444444 3 4 3 0000000000000 3 8 55 9999999 1 3 2 333333 3 0 3 7777 1111 3 66 0 9 000000000000000000000 00 2 11 3 5 444444444 0 1 00000000000 3333333 555555555 4 4 8 0 99999 8888 4 00000000000000000000000000000000000000000000000000000000 0 5 1 3 55 4 8888 888 444 4 4 4
lowQualScore : . . . . ... . ........... ..... . .. . .. .......... ... . . .... ................................................................... . . . ............. . . .. ....... . . . ...... . . . .... .... . .. . . ..................... .. . .. . . ......... . . ........... ....... ......... . . . . ..... .... . ........................................................ . . . . .. . .... ... ... . . .
lowQualScore : 0 6 6 6 888 6 66666666666 88888 1 66 2 33 9999999999 222 3 3 1111 8888888888888888888888888888888888888888888888888888888888888888888 3 2 6 0000000000000 6 7 55 6666666 9 6 0 555555 6 5 6 7777 4444 6 22 4 1 555555555555555555555 99 0 00 1 2 111111111 3 0 99999999999 2222222 555555555 4 4 9 0 11111 5555 0 66666666666666666666666666666666666666666666666666666666 4 7 2 6 55 0 5555 000 222 0 0 0
consensus : CCTANT-CTTCC-ACCT-GAATTCGCGTCTATCAGAGTAT-A--------CCAG----ATCCC-GAACTTTCTTACG-CATT-TCCT--CGTC-GGTG-CATGGCATCCAGTGGGCGTCC---AGACCTG-GCTTCATCTTCTA----AAGACTGT-----TCTA--CCGCGT-----T-------T---------------GAA--------------ATT-TANCCTGAGCA-T-------------AAG-ATGGTGCAGAGAGACCCATAAACATCGGCTAA-T-AAC-TCGCCGTGTA-----T-TTCCTTGCCTGTT-TTAC----CT----TTT-AAAT-ACAAGCACCGAAT--TAC------AT------ATAGCACGGTACTCAAC-TTTAGATGAAAAGCGTGCCTTT-GCATCACTAGCCAT-ATTTAT--GACATTNAATATCT--T--------CAA-----T-GA--------NTCGATACGCG-T-GCAA-TTTTGTACCCGGGTATACAA---C-AT----GTAT-TG-------------A------------A-------------A--------------TCGTGACCGTCTCGGC-CAATCGAAAATGGGAT--AGGC-T----GG-T-TAC-T-TAT-TGAC-TCGCCC-TCGTA
Reference ( family-1452 ) : CCTANT-CTTCC-ACCT-GAATTCGCGTCTATCAGAGTAT-A--------CCAG----ATCCC-GAACTTTCTTACG-CATT-TCCT--CGTC-GGTG-CATGGCATCCAGTGGGCGTCC---AGACCTG-GCTTCATCTTCTA----AAGACTGT-----TCTA--CCGCGT-----T-------T---------------GAA--------------ATT-TANCCTGAGCA-T-------------AAG-ATGGTGCAGAGAGACCCATAAACATCGGCTAA-T-AAC-TCGCCGTGTA-----T-TTCCTTGCCTGTT-TTAC----CT----TTT-AAAT-ACAAGCACCGAAT--TAC------AT------ATAGCACGGTACTCAAC-TTTAGATGAAAAGCGTGCCTTT-GCATCACTAGCCAT-ATTTAT--GACATTNAATATCT--T--------CAA-----T-GA--------NTCGATACGCG-T-GCAA-TTTTGTACCCGGGTATACAA---C-AT----GTAT-TG-------------A------------A-------------A--------------TCGTGACCGTCTCGGC-CAATCGAAAATGGGAT--AGGC-T----GG-T-TAC-T-TAT-TGAC-TCGCCC-TCGTA
gi|1 : T-TTTTC-ACTTTGAATTCGC--CTATCAGAGTATTG--------CCAT----ATCCCCGAACTTTCT-A-G-TATT-TTCTTCCGTC-AATGACA----ATCCAGAGGGCGTCC---AGACCTA-GCTT-ATCTTCTATTAAGAGAC-GT-----TTCA--CCACGT-----T-------TAAATTCCACTACCCAGAA--------------ATT--AACCTGAGCA-TTTAACCTGCAGATAAG-ATGGTGCAG-GAGACTTGCAAACGTTGGCTAG-----C-TTGCAGTGTACGGTAT-TTACTTGCCTGTT-TTAC----TT----TTT-AAAT-TCAAGTAC---ATTGTACCGA---AT------ATAGCATGGTACTCACC-TTTAGATG-AAAGCATGCCTTT-GTATTACTAGCTAT-GTT--T--GCTATTCAATATCT--TGTTATATAGAA-----C-GA--------CTAGATACGTACT-GTAA-TTTTG-ACCCATATATACAATCTT-ATACTAGTAT-TGAAACAAGGCATGCA------------A-------------A--------------CCATGGCCGTCTC-GT-CAATCGAAAATAGGAT--AGGC-T----GG-T-TAC-T-TAT-TGAC-TCACCC-TCGTA
gi|10 : gtctatttTTACT-CATT-TCTT--CGTT-GGTG-----GTATCCGGTGGGCGTCC---AAAACTG-GCTAAATCTTCTG----AAAA-TGCAAACCCCTA--C----------T-------T---------------AAA--------------TTT-CAACATGATCA-T-------------AAG-ATGGTGCAGA-AGACCCACAAACATCGGCTAA-----C-TCGCTGTGTA-----T-TTCCTTGCCTGTT-TTAT----CT----T---AAAT-ACAAGTACC-AAT--T---------T------AAAGCACGGTACTCAAC-CTTAGACGAATAGCAGGCCTTC-GCATCACTAGCCAT-ATT--T--GACATTTAATATCT--
gi|11 : CAG----ATCCC-AAACTT-CTTACA-AACT-TCTTG-CGT--AGTG-TA----ATCCAGTGGGCGTTCCCAAAATCTG-GC-TAATCTTCTG----AAAA-TG-------CAAATCCCTAT-----C-------T----------------AA--------------ATTATAGCATGATCA-T-------------AAG-ATGGTGCAGA-ATACCCACAAACATCGG---G-T-AAC--CGCTGTGTA-----T-TTCC-TGCTGGTTATTA------T----TAT-AAAT--CAAGTACC-AAT--T---------T------AAAGCACGGTACTCAAC-CTTAGAC---AATCG-GCCTTC-GCAT--CTAGCC
gi|12 : TTAGACGAATAGCAGGCCTTTTGCATCACTAGCCAT-ATTT----GACATTTAATATCT--TATTAGA--TAA-----C-GA--------CTTGATAGGTG-T-GCAA-TTTTGTATCCAGGTATAAAA---C-AT----GTAT-TG-------------A------------A-------------ACAAGGCATGAAAA-TCGTGACTGTCTCAGC-CAATTGGAAATGTGAT--AGGC-T----GG-T-TAC-A-TAT-TGAC-TTGCCA-TCGTA
gi|13 : cCTATTTCTTCC-ACCA-GAATTCTC--CTATCAGAGTAT-A--------CCAG----ATCCC-AAACTTCCTTACA-CCTT-TCTT--CGTT-GGTG-----GCATCCAGTGGGCGTCC---AGATCTG-GCTTCATCTTCTA----AAGAC-GT-----TATA--CCGCGC-----T-------T---------------GAA----------------T-TCCCCT
gi|14 : tgcctgcgTGTATCCGG-TA-AAAA---C-AT----GTATGTG-------------A------------A-------------ACAAGGCATGAAAATTCGTGA-CGTC---GC-CAATTGGAAATGTGAT--AGGC-T----GG-TATAC-A-TAT-TGACATTG-CA-TCGTAacccagaatttcacc
gi|15 : CCTAAT-CTTTCTACCT-GAATTCG-GTCTATCAG-GTAT-A--------CCAA----ATCCC-GAACTTTCTTGCG-TATT-TCCT--CGTT-GGTG-CATGGCGTCTAGTGGGgcata
gi|16 : GAAAAACATACTTTT-GCAT-ACTAGCCATGAT---T--GGCATTCAATATCTTAT--------CAA-----A-GA--------ATC
gi|17 : -------------A------------A-------------A--------------TTGTGATCGTCTTGAT-CAATTGGAAATGGGAT--AGGT-T----GG-C-TAC-T-TAT-GGAC-TCGCAC-TCGTAactcgacaggctggtcactct
gi|18 : atTTT-GCAT-ACTAGCCATGAT---T--GGCA-TCAATATCTTAT--------CAA-----A-GA--------ATCt
gi|19 : tT-CTTCC-ACCT-GAATTCGC--CTATCAGAGTAT-A--------TCAG----ATCCC-GAACTTTCTTactcgacagg
gi|2 : CCTAAT-CTTCT-ACCT-GAATTCG-GTCTATCAGGGTAT-A--------CCAA----ATCCC-GAACTTTCTTGCG-TATT-TCCT--CGTT-GGTG-CATGGCGTCTAGTGGGTTTCG---AGACCTG-GCTTCATCTTCTA----AAGACTGT-----TCTA--CGGCGT-----T-------T---------------GAA--------------ATT-TACCCTGAGCA-T-------------AAG-ATGGTGCAGAGGGACCCATAAACATTGGCTAATT-AAC-TCGCCATTT------T-TTCCTTGCCTGTT-TCAC----CT----TTT-AAAT-ACAAGCACCGAAT--TACATGTATAT------ATAGCACGATACTCAACTTTTAGATGAAAGGCGTACCTGT-GCATCACTAGTCCT-ATTTATA-GACATTGAATATCT--C--------CAA-----T-GA--------GTCGATGCGCG-T-GCAA-TTTTGTACCCGGGTATACAA---C-AT----GTAT-TG-------------A------------A-------------A--------------TCGTGACTGTTTCGGC-CAATCGAAAATGGGAT--ATGCTT----GG-T-TAC-T-TAT-TGAC-TCGCCCATTGTA
gi|3 : CCTAAT-CTTCT-ACCT-GAATTCGTGTCTATCAGGGTAT-A--------CCAA----ATCCC-GAACTTTCTTGCG-TATT-TCCT--CGTT-GGTG-CATGGCGTCTAGTGGGTTTCG---AGACCTG-GCTTCATCTTCTA----AAGACTGT-----TCTA--CGGCGT-----T-------T---------------GAA--------------ATT-TACCCTGAGCA-T-------------AAG-ATGGTGCAGAGGGACCCATAAACATTGGCTAATT-AAC-TCGCCATTT------T-TTCCTTGCCTGTT-TCAC----CT----TTT-AAAT-ACAAGCACCGAAT--TACATGTATAT------ATAGCACGATACTCAACTTTTAGATGAAAGGCGTACCTGT-GCATCACTAGTCCT-ATTTATA-GACATTGAATATCT--C--------CAA-----T-GA--------GTCGATGCGCG-T-GCAA-TTTTGTACCCGGGTATACAA---C-AT----GTAT-TG-------------A------------A-------------A--------------TCGTGACTGTTTCGGC-CAATCGAAAATGGGAT--ATGC-T----GG-T-TAC-T-TAT-TGAC-TCGCCC-ATGTA
gi|4 : CCTATT-CTTTC-ACCA-GAATTCGA--CTATTAGAGTAC-AACATATCCCCCGCAATATCCC-GATCTTTCTTACA-CATT-TCTT--TGTC-AGTG-----GCATCCAGTGGGCGCCC---AGTCCTG-GCTTCATCATCTA----AATAC-GT-----TCTA--CCGCTT-----T-------T---------------GAATTCCCTTCCCAGA-ATC-TAACCTGAGTA-T-------------AAA-AAGGCACAGAAAGACCCATAAACATCGG---A-T-AAC-TCGCCATGTA-----T-TTCCTTGCCTGAT-TTAC----CT----TTTTCAAT-AAAAGCACCAAAT--TAC------A----------GCATGGTACTCAAC-TTTAGTTGAAAAGCATGTCTTT-GCATCAg
gi|4 : atgACGCG-T-GCAA-TTTTGTACCCAGGTATAAAA---C-AT----GTAT-CG-------------A------------AGCAAGGCAGGAAAA--------------TCGTAACCGTCTCGGT-CAATCGAAAATGGGAT--AGGC-T----GG-A-CAC-T-TAT-TGAC-GCGCCC-TCGTAacgcgtgcaattttgtacccaggtataaaacatgtatcgaagcaaggcaggaaaatcgtaaccgtctcggtcaatcgaaaatgggataggctggacacttattgacgcgccctcgtata
gi|5 : atgcctattctttcaccagaattcgactattagagtacaacatatcccccgcaatatcccgatctttcttacacatttctttgtcagtggcatccagtgggcgcccagtcctggcttcatcatctaaatacgttctaccgcttttgaattcccttcccagaatctaacctgagtataaaaaggcacagaaagacccataaacatcggataactcgccatgtatttccttgcctgatttacctttttcaataaaagcaccaaattacagcatggtactcaactttagttgaaaagcatgtctttgcatcaTATT-CTTTT-ACCT-GAATT---GCCTAAC-GAGTAT-G--------ACAC-----TCCA-GAACTT-CATACATCATTATCTT--AATCCAGT----TGACATTTCGTTGGCGGCC---AGAACTGCACTCCATGTTCTA----AAGATT-------TCTA--ACGTGT-----TATAGTTCC---------------AGA--------------ATA-TACCCTGAGCAAC-------------AAGCATGGTACAGA-AGACC-ATTAACATA---TTG-T-ACCGTC-CCGTGTA-----TCTTCCTTGC-TCTT-TAAC----CTA---TCC-AAAT-TCAA----C--AT--TA-----------------AGCAC--CACTCAACATTCAGATGAAAAACATGC--TT-CAATTATTAACCAT-G-TTAT----CATTTAATA--------------CAA-----TAGAGACATGACCTCCATACGCG-TAACAAGTTTTGTACTCAGGAATG-AA---CTAT----GTA--TG-------------A------------G-------------A---------------CG-GACCGTC-CAGC-CAACCAAAAATAGGACTAAGAC-T----GGTT-TAC-T-CAT-TGAC-TGGTCC-TCATta
gi|6 : aTATT-CTTTT-ACCT-GAATTCGC--CTAAC-GAGTAT-G---------CAG----CTCCA-GAACGTTCATACA-CATTATCTT--AATC-AG-----TGACATTTGTTGGG-G-CC---AAA-CTG-ACTCCAT-TTCTA----AAGATT-T-----TCTA--ACGTGTATATAT-------TCCC------------AGA--------------ATA-TA-CCTGAGCA-A-------------AAG-ATGGTACAGA-AGACCCATTAACAT---ATTG-T-ACC-TCGCCGTGTA-----T-TTCCTTGCATCTT-TTAC----CT----ATC-AAAT-TCA------GAAT--TA-----------------AGCAC--CACTCAAC-ATTAGATGAAAA--ATGGCTTT-CAATTATTAACCAT-G-TTAT----CATTTAATAAAT--TAGA-----GAA-----T-GA--------CTC-ATACGCG-T-ACAAGTTTTGTACTCAGGAAT--AA---CTAT----GTAT-GG-------------A------------G-------------A---------------CGTGACCGTC-CAGCTCAACCAAAAATAGGAT--AGAC-T----GG---TAC-T-CAT-TGAC-TGGTCC-TCATA
gi|7 : tgtgctaCCTAAT-CTTCT-ACCT-GAATTCGT-TCTATCAG-GTAT-A--------CCA-----ATCCC-GAACTTTCTTGCG-TATT-TCCT--CGTT-GGTG-CATGGCGTCTAGTGGGTTTTCG--AGACCTG-GCTTCATCTTCTA----AAGACT-------TCTA--CGGCGT-----T-------T---------------GAA--------------ATT-TACCCTGAGCA-T-------------AAG-ATGGTGCAGAGGGACCCATAAACATTGGCTAA-TTAAC-TCGC-ATTT------T-TTCCTTGCCTGTT-TCAC----CT----TTT-AAAT-ACAAGCACCGAAT--TAC------ATGTATATATAGCACGATACTCAAC-TTTAGATGAAAGGCGTACCTGT-GCATCACTAGTCCT-ATTTATTAGACATTGAATATCT--C--------CAA-----T-GA--------GTCGATGCGCG-T-GCAA-TTTTGTACCCGGGTATACAA---C-AT----GTAT-TG-------------A------------A-------------A--------------TCGTGACTGTTTCGGC-CAATCG
gi|8 : CAG----ATTTC-TAATTTTCTTACA-CATT-AGTT--TGTT--AT----TGGCATTCAGTGGGCTTCC---AGACTTG-GCTTCATATTCTA----AAG---------------------------------------------------------------------TT-TAACCTTATCA-C-------------AAG-ATGATGCAGA-AGACTCATTAACATTTGC----T-AAC-TCGCGGTGAA-----T-TTTGTTGCATGTT-GCACGATACTCAACTTT-AGATGAAAAGCAC
gi|8 : acagT--TGC------AT------GTTGCACGATACTCAAC-TTTAGATGAAAAGCACACCTTT-GCGTCACTAGCCAT-GTT--T--GATATTTAGTATCT--T--------GAAAAGAGT-GA--------ATTGATACGCG-T-TCAA-TTTTGTATCCAGGTATA-AA---A-AT----GTAT-TGC------------AACTTGACATGGTA-------------A--------------TCGTGGC--TCCCGGT-CAATTGAAAATTATGT--AGAC-TTATCAA-T-TACATGTATGTAAC-TCACCA-TCGacctttgcgtcactagccatgtttgatatttagtatcttgaaaagagtgaattgatacgcgttcaattttgtatccaggtataaaaatgtattgcaacttgacatggtaatcgtggctcccggtcaattgaaaattatgtagacttatcaattacatgtatgtaactcaccatcg
gi|9 : acagcagatttctaattttcttacacattagtttgttattggcattcagtgggcttccagacttggcttcatattctaaagtttaaccttatcacaagatgatgcagaagactcattaacatttgctaactcgcggtgaattttgATT-CTTTC-ACCT-GAATTCGC--TTATCAGAA-----------------------CCC-GAACAGTCTAACA-CAGT-TCCT--CATC------TTTGACATTCAGTGGACATCT---AGGTCTG-GTTTCATTTTCTA----AAGAC-GT-----TCTA--CCGCTT-----T-------T---------------GAATTCCCTTACCCACAATT-TAACCTGAACA-T-------------AAG-ATGGTGCCGA-AGACCCACAAACATCCGCTAA-----C-TCGCCGTGGA-----T-TTTCTTGCCCGTT-TTAC----CA----TTT-GAAT-ACAAGTACCGAAT------------T------ATAGCACAGTACTC
blockSeqs : A T T . TGT A AACATATCCC GCAAT . AT A G TGGTGCAT CCA A C . CGTTCTACCGCTTTTGAATTCCCTTACCCACA A A A . C G CG CTAATT A G T A C A GATA CAAC T GA G TACATGTATATAT T AG T C ATTTATTA T TATTAGA AAGAGT GACATGACC . A G A CT . G AAACAAGGCATGAAAATT T A T TA T TATC TA ATG G A A
blockSeqs : A . . . GT A AC G . T A . TGGTGCAT G T . . CGTTCTACCGCTTTTGAATTCCCTTCCCAGA . G . . . G CG CTAATT A . T A . . . A . A G TACATGTATATAT T AG . C ATTTATA T TAGA TA C . . G A CT . . AAACAAGGCATGAAAAT T G . . . . TT A . . .
blockSeqs : A . . . GT G AC G . A . . TGGTGCAT . T . . TTTTCTAACGTGTATATATTCCCAGA . C . . . A TG CTAATT A . C A . . . . . A A TACATGTATATAT A AT . C ATTTATA C TAT C A . . . C C . . AAGCAAGGCAGGAAAAT T G . . . . T A . . .
blockSeqs : T . . . GC G AT A . A . . TGGTGCAT . C . . TTTCTAACGTGTTATAGTTCCAGA . C . . . G TG ATTGT A . C A . . . . . A G TGCATGT . GT . C GTTAT C TAT A A . . . C C . . CAACTTGACATGGTAAT T G . . . . C T . . .
blockSeqs : T . . . TT A AC G . G . . AGTGTA . C . . CTGTTCTACGGCGTTTGAA . C . . . . CG CTAA C . C A . . . . . A G TTAA . GT . C GTTAT G C A G . . . A C . . AAAT T G . . . . T T . . .
blockSeqs : T . . . C A AC A . G . . CCAGTT . C . . CTGTTCTACGGCGTTTGAA . A . . . . TG TTGT C . C A . . . . . T G TTAA . AT . T ATTT G C T G . . . C C . . AAAT T A . . . . T T . . .
blockSeqs : A . . . C A GA A . G . . TGGTG . A . . TGCAAACCCCTACTTAAA . C . . . . TT CTAA A . C A . . . . . T . TACA . AT . T ATTT T C T C . . . . C . . AAAT C A . . . . A T . . .
blockSeqs : T . . . A A AC C . A . . TGGTG . C . . CGTTATACCGCGCTTGAA . C . . . . CC GT A . G . . . . . . A . TAT . AT . C GATT T T T G . . . . C . . AAAT . G . . . . T T . . .
blockSeqs : . . . C . G G . A . . CAGTG . C . . TGCAAATCCCTATCTAA . A . . . . A AT . . C . . . . . . A . TA . GT . C GATT G . T A . A . . AGA . G . . . . . T . . .
blockSeqs : . . . C . . G . G . . CAGT . T . . CTTCTACGGCGTTTGAA . A . . . . . CT . . . . . . . . . . TA AC . . GTTT T AGA . . .
blockSeqs : . . A . . TATT . . . . . . . G . .
blockSeqs : . . A . . CTTT . .
blockSeqCons : AC********* ** **** ************* CTAAT** A***** TACATAT************** C********** C**** ****
originalCons : CCTANT-CTTCC-ACCT-GAATTCGCGTCTATCAGAGTAT-A--------CCAG----ATCCC-GAACTTTCTTACG-CATT-TCCT--CGTC-GGTG-CATGGCATCCAGTGGGCGTCC---AGACCTG-GCTTCATCTTCTA----AAGACTGT-----TCTA--CCGCGT-----T-------T---------------GAA--------------ATT-TANCCTGAGCA-T-------------AAG-ATGGTGCAGAGAGACCCATAAACATCGGCTAA-T-AAC-TCGCCGTGTA-----T-TTCCTTGCCTGTT-TTAC----CT----TTT-AAAT-ACAAGCACCGAAT--TAC------AT------ATAGCACGGTACTCAAC-TTTAGATGAAAAGCGTGCCTTT-GCATCACTAGCCAT-ATTTAT--GACATTNAATATCT--T--------CAA-----T-GA--------NTCGATACGCG-T-GCAA-TTTTGTACCCGGGTATACAA---C-AT----GTAT-TG-------------A------------A-------------A--------------TCGTGACCGTCTCGGC-CAATCGAAAATGGGAT--AGGC-T----GG-T-TAC-T-TAT-TGAC-TCGCCC-TCGTA
finalCons : CCTANT-CTTCC-ACCT-GAATTCGCGTCTATCAGAGTATAC---------CAG----ATCCC-GAACTTTCTTACG-CATT-TCCT--CGTC-GGTG-CATGGCATCCAGTGGGCGTCC---AGACCTG-GCTTCATCTTCTA----AAGACTGT-----TCTA--CCGCGT-----T-------T---------------GAA--------------ATT-TANCCTGAGCA-T-------------AAG-ATGGTGCAGAGAGACCCATAAACATCGGCTAAT--AAC-TCGCCGTGTA-----T-TTCCTTGCCTGTT-TTAC----CT----TTT-AAAT-ACAAGCACCGAATTACATAT--------------AGCACGGTACTCAAC-TTTAGATGAAAAGCGTGCCTTT-GCATCACTAGCCAT-ATTTAT--GACATTNAATATCTC----------CAA-----T-GA--------NTCGATACGCG-T-GCAA-TTTTGTACCCGGGTATACAAC----AT----GTAT-TG-------------A------------A-------------A--------------TCGTGACCGTCTCGGC-CAATCGAAAATGGGAT--AGGC-T----GG-T-TAC-T-TAT-TGAC-TCGCCC-TCGTA
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|20 ): ATGTGAATGCCTAATATATGAACTATTCTCCACCTAAAATTCGCCTA
Alignments
lowQualScore : 333 11111111111 2222222222 6666666666666666666666666666666666666666666666666666666666666666666 2222222222222 1 1111111 111111 1111 55555555555555555555 1 222222222 444444444444444444 1111111 111111111 1 88888888888888888888888888888888888888888888888888888888
lowQualScore : 1 3 3 3 333 2 44444444444 99999 3 33 6 77 2222222222 999 2 3 7777 4444444444444444444444444444444444444444444444444444444444444444444 3 4 3 0000000000000 3 8 55 9999999 1 3 2 333333 3 0 3 7777 1111 3 66 0 9 55555555555555555555 00 2 11 3 5 444444444 0 1 444444444444444444 3333333 555555555 4 4 8 0 99999 8888 4 00000000000000000000000000000000000000000000000000000000 0 5 1 3 55 4 8888 888 444 4 4 4
lowQualScore : . . . . ... . ........... ..... . .. . .. .......... ... . . .... ................................................................... . . . ............. . . .. ....... . . . ...... . . . .... .... . .. . . .................... .. . .. . . ......... . . .................. ....... ......... . . . . ..... .... . ........................................................ . . . . .. . .... ... ... . . .
lowQualScore : 0 6 6 6 888 6 66666666666 88888 1 66 2 33 9999999999 222 3 3 1111 8888888888888888888888888888888888888888888888888888888888888888888 3 2 6 0000000000000 6 7 55 6666666 9 6 0 555555 6 5 6 7777 4444 6 22 4 1 00000000000000000000 99 0 00 1 2 111111111 3 0 222222222222222222 2222222 555555555 4 4 9 0 11111 5555 0 66666666666666666666666666666666666666666666666666666666 4 7 2 6 55 0 5555 000 222 0 0 0
consensus : CCTANT-CTTCC-ACCT-GAATTCGCGTCTATCAGAGTAT-A--------CCAG----ATCCC-GAACTTTCTTACG-CATT-TCCT--CGTC-GGTG-CATGGCATCCAGTGGGCGTCC---AGACCTG-GCTTCATCTTCTA----AAGACTGT-----TCTA--CCGCGT-----T-------T---------------GAA--------------ATT-TANCCTGAGCA-T-------------AAG-ATGGTGCAGAGAGACCCATAAACATCGGCTAA-T-AAC-TCGCCGTGTA-----T-TTCCTTGCCTGTT-TTAC----CT----TTT-AAAT-ACAAGCACCGAATT--AC------AT------ATAGCACGGTACTCAAC-TTTAGATGAAAAGCGTGCCTTT-GCATCACTAGCCAT-ATTTAT--GACATTNAATATCT--T------C--------AA-----T-GA--------NTCGATACGCG-T-GCAA-TTTTGTACCCGGGTATACAA---C-AT----GTAT-TG-------------A------------A-------------A--------------TCGTGACCGTCTCGGC-CAATCGAAAATGGGAT--AGGC-T----GG-T-TAC-T-TAT-TGAC-TCGCCC-TCGTA
Reference ( family-1452 ) : CCTANT-CTTCC-ACCT-GAATTCGCGTCTATCAGAGTAT-A--------CCAG----ATCCC-GAACTTTCTTACG-CATT-TCCT--CGTC-GGTG-CATGGCATCCAGTGGGCGTCC---AGACCTG-GCTTCATCTTCTA----AAGACTGT-----TCTA--CCGCGT-----T-------T---------------GAA--------------ATT-TANCCTGAGCA-T-------------AAG-ATGGTGCAGAGAGACCCATAAACATCGGCTAA-T-AAC-TCGCCGTGTA-----T-TTCCTTGCCTGTT-TTAC----CT----TTT-AAAT-ACAAGCACCGAATT--AC------AT------ATAGCACGGTACTCAAC-TTTAGATGAAAAGCGTGCCTTT-GCATCACTAGCCAT-ATTTAT--GACATTNAATATCT--C------C--------AA-----T-GA--------NTCGATACGCG-T-GCAA-TTTTGTACCCGGGTATACAA---C-AT----GTAT-TG-------------A------------A-------------A--------------TCGTGACCGTCTCGGC-CAATCGAAAATGGGAT--AGGC-T----GG-T-TAC-T-TAT-TGAC-TCGCCC-TCGTA
gi|1 : T-TTTTC-ACTTTGAATTCGC--CTATCAGAGTATTG--------CCAT----ATCCCCGAACTTTCT-A-G-TATT-TTCTTCCGTC-AATGACA----ATCCAGAGGGCGTCC---AGACCTA-GCTT-ATCTTCTATTAAGAGAC-GT-----TTCA--CCACGT-----T-------TAAATTCCACTACCCAGAA--------------ATT--AACCTGAGCA-TTTAACCTGCAGATAAG-ATGGTGCAG-GAGACTTGCAAACGTTGGCTAG-----C-TTGCAGTGTACGGTAT-TTACTTGCCTGTT-TTAC----TT----TTT-AAAT-TCAAGTAC---ATTGTACCGA---AT------ATAGCATGGTACTCACC-TTTAGATGAAA-GCATGCCTTT-GTATTACTAGCTAT-GTTT----GCTATTCAATATCT--T------GTTATATAGAA-----C-GA--------CTAGATACGTACT-GTAA-TTTTG-ACCCATATATACAATCTT-ATACTAGTAT-TGAAACAAGGCATGCA------------A-------------A--------------CCATGGCCGTCTC-GT-CAATCGAAAATAGGAT--AGGC-T----GG-T-TAC-T-TAT-TGAC-TCACCC-TCGTA
gi|10 : gtctatttTTACT-CATT-TCTT--CGTT-GGTG-----GTATCCGGTGGGCGTCC---AAAACTG-GCTAAATCTTCTG----AAAA-TGCAAACCCCTA--C----------T-------T---------------AAA--------------TTT-CAACATGATCA-T-------------AAG-ATGGTGCAGA-AGACCCACAAACATCGGCTAA-----C-TCGCTGTGTA-----T-TTCCTTGCCTGTT-TTAT----CT----T---AAAT-ACAAGTACC-AATT-----------T------AAAGCACGGTACTCAAC-CTTAGACGAATAGCAGGCCTTC-GCATCACTAGCCAT-ATT--T--GACATTTAATATCT--
gi|11 : CAG----ATCCC-AAACTT-CTTACA-AACT-TCTTG-CGT--AGTG-TA----ATCCAGTGGGCGTTCCCAAAATCTG-GC-TAATCTTCTG----AAAA-TG-------CAAATCCCTAT-----C-------T----------------AA--------------ATTATAGCATGATCA-T-------------AAG-ATGGTGCAGA-ATACCCACAAACATCGG---G-T-AAC--CGCTGTGTA-----T-TTCC-TGCTGGTTATTA------T----TAT-AAAT--CAAGTACC-AATT-----------T------AAAGCACGGTACTCAAC-CTTAGAC---AATCG-GCCTTC-GCAT--CTAGCC
gi|12 : TTAGACGAATAGCAGGCCTTTTGCATCACTAGCCAT-ATTT----GACATTTAATATCT--TATTAGAT--------AA-----C-GA--------CTTGATAGGTG-T-GCAA-TTTTGTATCCAGGTATAAAA---C-AT----GTAT-TG-------------A------------A-------------ACAAGGCATGAAAA-TCGTGACTGTCTCAGC-CAATTGGAAATGTGAT--AGGC-T----GG-T-TAC-A-TAT-TGAC-TTGCCA-TCGTA
gi|13 : cCTATTTCTTCC-ACCA-GAATTCTC--CTATCAGAGTAT-A--------CCAG----ATCCC-AAACTTCCTTACA-CCTT-TCTT--CGTT-GGTG-----GCATCCAGTGGGCGTCC---AGATCTG-GCTTCATCTTCTA----AAGAC-GT-----TATA--CCGCGC-----T-------T---------------GAA----------------T-TCCCCT
gi|14 : tgcctgcgTGTATCCGG-TA-AAAA---C-AT----GTATGTG-------------A------------A-------------ACAAGGCATGAAAATTCGTGA-CGTC---GC-CAATTGGAAATGTGAT--AGGC-T----GG-TATAC-A-TAT-TGACATTG-CA-TCGTAacccagaatttcacc
gi|15 : CCTAAT-CTTTCTACCT-GAATTCG-GTCTATCAG-GTAT-A--------CCAA----ATCCC-GAACTTTCTTGCG-TATT-TCCT--CGTT-GGTG-CATGGCGTCTAGTGGGgcata
gi|16 : GAAAAACATACTTTT-GCAT-ACTAGCCATGAT---T--GGCATTCAATATCTTAT------C--------AA-----A-GA--------ATC
gi|17 : -------------A------------A-------------A--------------TTGTGATCGTCTTGAT-CAATTGGAAATGGGAT--AGGT-T----GG-C-TAC-T-TAT-GGAC-TCGCAC-TCGTAactcgacaggctggtcactct
gi|18 : atTTT-GCAT-ACTAGCCATGAT---T--GGCA-TCAATATCTTAT------C--------AA-----A-GA--------ATCt
gi|19 : tT-CTTCC-ACCT-GAATTCGC--CTATCAGAGTAT-A--------TCAG----ATCCC-GAACTTTCTTactcgacagg
gi|2 : CCTAAT-CTTCT-ACCT-GAATTCG-GTCTATCAGGGTAT-A--------CCAA----ATCCC-GAACTTTCTTGCG-TATT-TCCT--CGTT-GGTG-CATGGCGTCTAGTGGGTTTCG---AGACCTG-GCTTCATCTTCTA----AAGACTGT-----TCTA--CGGCGT-----T-------T---------------GAA--------------ATT-TACCCTGAGCA-T-------------AAG-ATGGTGCAGAGGGACCCATAAACATTGGCTAATT-AAC-TCGCCATTT------T-TTCCTTGCCTGTT-TCAC----CT----TTT-AAAT-ACAAGCACCGAATT--ACATGTATAT------ATAGCACGATACTCAACTTTTAGATGAAAGGCGTACCTGT-GCATCACTAGTCCT-ATTTATA-GACATTGAATATCT--C------C--------AA-----T-GA--------GTCGATGCGCG-T-GCAA-TTTTGTACCCGGGTATACAA---C-AT----GTAT-TG-------------A------------A-------------A--------------TCGTGACTGTTTCGGC-CAATCGAAAATGGGAT--ATGCTT----GG-T-TAC-T-TAT-TGAC-TCGCCCATTGTA
gi|3 : CCTAAT-CTTCT-ACCT-GAATTCGTGTCTATCAGGGTAT-A--------CCAA----ATCCC-GAACTTTCTTGCG-TATT-TCCT--CGTT-GGTG-CATGGCGTCTAGTGGGTTTCG---AGACCTG-GCTTCATCTTCTA----AAGACTGT-----TCTA--CGGCGT-----T-------T---------------GAA--------------ATT-TACCCTGAGCA-T-------------AAG-ATGGTGCAGAGGGACCCATAAACATTGGCTAATT-AAC-TCGCCATTT------T-TTCCTTGCCTGTT-TCAC----CT----TTT-AAAT-ACAAGCACCGAATT--ACATGTATAT------ATAGCACGATACTCAACTTTTAGATGAAAGGCGTACCTGT-GCATCACTAGTCCT-ATTTATA-GACATTGAATATCT--C------C--------AA-----T-GA--------GTCGATGCGCG-T-GCAA-TTTTGTACCCGGGTATACAA---C-AT----GTAT-TG-------------A------------A-------------A--------------TCGTGACTGTTTCGGC-CAATCGAAAATGGGAT--ATGC-T----GG-T-TAC-T-TAT-TGAC-TCGCCC-ATGTA
gi|4 : CCTATT-CTTTC-ACCA-GAATTCGA--CTATTAGAGTAC-AACATATCCCCCGCAATATCCC-GATCTTTCTTACA-CATT-TCTT--TGTC-AGTG-----GCATCCAGTGGGCGCCC---AGTCCTG-GCTTCATCATCTA----AATAC-GT-----TCTA--CCGCTT-----T-------T---------------GAATTCCCTTCCCAGA-ATC-TAACCTGAGTA-T-------------AAA-AAGGCACAGAAAGACCCATAAACATCGG---A-T-AAC-TCGCCATGTA-----T-TTCCTTGCCTGAT-TTAC----CT----TTTTCAAT-AAAAGCACCAAATT--AC------A----------GCATGGTACTCAAC-TTTAGTTGAAAAGCATGTCTTT-GCATCAg
gi|4 : atgACGCG-T-GCAA-TTTTGTACCCAGGTATAAAA---C-AT----GTAT-CG-------------A------------AGCAAGGCAGGAAAA--------------TCGTAACCGTCTCGGT-CAATCGAAAATGGGAT--AGGC-T----GG-A-CAC-T-TAT-TGAC-GCGCCC-TCGTAacgcgtgcaattttgtacccaggtataaaacatgtatcgaagcaaggcaggaaaatcgtaaccgtctcggtcaatcgaaaatgggataggctggacacttattgacgcgccctcgtata
gi|5 : atgcctattctttcaccagaattcgactattagagtacaacatatcccccgcaatatcccgatctttcttacacatttctttgtcagtggcatccagtgggcgcccagtcctggcttcatcatctaaatacgttctaccgcttttgaattcccttcccagaatctaacctgagtataaaaaggcacagaaagacccataaacatcggataactcgccatgtatttccttgcctgatttacctttttcaataaaagcaccaaattacagcatggtactcaactttagttgaaaagcatgtctttgcatcaTATT-CTTTT-ACCT-GAATT---GCCTAAC-GAGTAT-G--------ACAC-----TCCA-GAACTT-CATACATCATTATCTT--AATCCAGT----TGACATTTCGTTGGCGGCC---AGAACTGCACTCCATGTTCTA----AAGATT-------TCTA--ACGTGT-----TATAGTTCC---------------AGA--------------ATA-TACCCTGAGCAAC-------------AAGCATGGTACAGA-AGACC-ATTAACATA---TTG-T-ACCGTC-CCGTGTA-----TCTTCCTTGC-TCTT-TAAC----CTA---TCC-AAAT-TCAA----C--ATT--A-----------------AGCAC--CACTCAACATTCAGATGAAAAACATGC--TT-CAATTATTAACCAT-G-TTAT----CATTTAATA------------C--------AA-----TAGAGACATGACCTCCATACGCG-TAACAAGTTTTGTACTCAGGAATG-AA---CTAT----GTA--TG-------------A------------G-------------A---------------CG-GACCGTC-CAGC-CAACCAAAAATAGGACTAAGAC-T----GGTT-TAC-T-CAT-TGAC-TGGTCC-TCATta
gi|6 : aTATT-CTTTT-ACCT-GAATTCGC--CTAAC-GAGTAT-G---------CAG----CTCCA-GAACGTTCATACA-CATTATCTT--AATC-AG-----TGACATTTGTTGGG-G-CC---AAA-CTG-ACTCCAT-TTCTA----AAGATT-T-----TCTA--ACGTGTATATAT-------TCCC------------AGA--------------ATA-TA-CCTGAGCA-A-------------AAG-ATGGTACAGA-AGACCCATTAACAT---ATTG-T-ACC-TCGCCGTGTA-----T-TTCCTTGCATCTT-TTAC----CT----ATC-AAAT-TCA------GAATT--A-----------------AGCAC--CACTCAAC-ATTAGATGAAAA--ATGGCTTT-CAATTATTAACCAT-G-TTAT----CATTTAATAAAT--TAGA---G--------AA-----T-GA--------CTC-ATACGCG-T-ACAAGTTTTGTACTCAGGAAT--AA---CTAT----GTAT-GG-------------A------------G-------------A---------------CGTGACCGTC-CAGCTCAACCAAAAATAGGAT--AGAC-T----GG---TAC-T-CAT-TGAC-TGGTCC-TCATA
gi|7 : tgtgctaCCTAAT-CTTCT-ACCT-GAATTCGT-TCTATCAG-GTAT-A--------CCA-----ATCCC-GAACTTTCTTGCG-TATT-TCCT--CGTT-GGTG-CATGGCGTCTAGTGGGTTTTCG--AGACCTG-GCTTCATCTTCTA----AAGACT-------TCTA--CGGCGT-----T-------T---------------GAA--------------ATT-TACCCTGAGCA-T-------------AAG-ATGGTGCAGAGGGACCCATAAACATTGGCTAA-TTAAC-TCGC-ATTT------T-TTCCTTGCCTGTT-TCAC----CT----TTT-AAAT-ACAAGCACCGAATT--AC------ATGTATATATAGCACGATACTCAAC-TTTAGATGAAAGGCGTACCTGT-GCATCACTAGTCCT-ATTTATTAGACATTGAATATCT--C------C--------AA-----T-GA--------GTCGATGCGCG-T-GCAA-TTTTGTACCCGGGTATACAA---C-AT----GTAT-TG-------------A------------A-------------A--------------TCGTGACTGTTTCGGC-CAATCG
gi|8 : CAG----ATTTC-TAATTTTCTTACA-CATT-AGTT--TGTT--AT----TGGCATTCAGTGGGCTTCC---AGACTTG-GCTTCATATTCTA----AAG---------------------------------------------------------------------TT-TAACCTTATCA-C-------------AAG-ATGATGCAGA-AGACTCATTAACATTTGC----T-AAC-TCGCGGTGAA-----T-TTTGTTGCATGTT-GCACGATACTCAACTTT-AGATGAAAAGCAC
gi|8 : acagTT--GC------AT------GTTGCACGATACTCAAC-TTTAGATGAAAAGCACACCTTT-GCGTCACTAGCCAT-GTT--T--GATATTTAGTATCT--T------G--------AAAAGAGT-GA--------ATTGATACGCG-T-TCAA-TTTTGTATCCAGGTATA-AA---A-AT----GTAT-TGC------------AACTTGACATGGTA-------------A--------------TCGTGGC--TCCCGGT-CAATTGAAAATTATGT--AGAC-TTATCAA-T-TACATGTATGTAAC-TCACCA-TCGacctttgcgtcactagccatgtttgatatttagtatcttgaaaagagtgaattgatacgcgttcaattttgtatccaggtataaaaatgtattgcaacttgacatggtaatcgtggctcccggtcaattgaaaattatgtagacttatcaattacatgtatgtaactcaccatcg
gi|9 : acagcagatttctaattttcttacacattagtttgttattggcattcagtgggcttccagacttggcttcatattctaaagtttaaccttatcacaagatgatgcagaagactcattaacatttgctaactcgcggtgaattttgATT-CTTTC-ACCT-GAATTCGC--TTATCAGAA-----------------------CCC-GAACAGTCTAACA-CAGT-TCCT--CATC------TTTGACATTCAGTGGACATCT---AGGTCTG-GTTTCATTTTCTA----AAGAC-GT-----TCTA--CCGCTT-----T-------T---------------GAATTCCCTTACCCACAATT-TAACCTGAACA-T-------------AAG-ATGGTGCCGA-AGACCCACAAACATCCGCTAA-----C-TCGCCGTGGA-----T-TTTCTTGCCCGTT-TTAC----CA----TTT-GAAT-ACAAGTACCGAAT------------T------ATAGCACAGTACTC
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|20 ): ATGTGAATGCCTAATATATGAACTATTCTCCACCTAAAATTCGCCTA