lowQualScore : 111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111 1111111111111
lowQualScore : 1 11111 222 111 11 11 77777777777777777777 5555555555 111 8888888888888888888888888888 1 1 77777777777777 11 111 1 66666666666 1 3333333333 3 333333 44444 1 2222 1 11 11111 444 22 1 3333 1 1 222222222 1 222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222 111 11111 1111 11111 66666666666666666666666666666666666666666 2 222 22222222222 2222222222222222 1111111 1 1 33 22 33333 55555555555555 444444444444 1 1111 11 1 222 11 33 222 222 33333333333 1 22222 22222 2222 1 22 1 11 333333333 1 1 1 11 33333333 33 44444 1 11 11 11 11 1 2 1111111111111 666666666666666666666666666666 1 1 22222 33 5555555555555 2 1 22222 5555555555555555555 1 22 1 2222 4444444444444444 1 11 22222 333333333 111 33 333333 222 2222 2 2 11111 22222
lowQualScore : 9 1 8 5 44444 1 5 000 888 000 00 5 5 5 6 11 88 8 00000000000000000000 0 8 8 8 8 8888888888 8 444 8 8 8 0 1111111111111111111111111111 0 8 1 6 0 11111111111111 00 111 0 00000000000 0 2222222222 0 333333 00000 0 3 5555 0 1 66 88888 777 33 3 0 3333 0 0 3 999999999 0 2 3 111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111 111 55555 4444 66666 999 6 777 888 11111111111111111111111111111111111111111 6 0 555 8 33333333333 8 8888888888888888 2222222 8 6 3 0 2 0 8 8 11 8 8 55 8 0 22222 11111111111111 111111111111 0 5555 0 33 1 0 444 7 99 11 6 333 333 4 66666666666 0 88888 55555 1111 3 0 55 3 0 66 777777777 0 0 0 22 55555555 3 11 55555 0 11 99 1 5 8 88 8 11 22 2 6 7777777777777 6 888888888888888888888888888888 3 0 88888 99 1 55 0 0 8888888888888 6 8 6 00000 1 5555555555555555555 0 1 44 0 4444 6666666666666666 2 88 44444 3 3 444444444 5 5 000 5 5 4 33 5 0 0 222222 5 666 5 555 77 7777 33 3 0 11111 55555 6
lowQualScore : . . . . ..... . . ... ... ... .. . . . . .. .. . .................... . . . . . .......... . ... . . . . ............................ . . . . . .............. .. ... . ........... . .......... . ...... ..... . . .... . . .. ..... ... .. . . .... . . . ......... . . . ............................................................................................................ ... ..... .... ..... ... . ... ... ......................................... . . ... . ........... . ................ ....... . . . . . . . . .. . . .. . . ..... .............. ............ . .... . .. . . ... . .. .. . ... ... . ........... . ..... ..... .... . . .. . . .. ......... . . . .. ........ . .. ..... . .. .. . . . .. . .. .. . . ............. . .............................. . . ..... .. . .. . . ............. . . . ..... . ................... . . .. . .... ................ . .. ..... . . ......... . . ... . . . .. . . . ...... . ... . ... .. .... .. . . ..... ..... .
lowQualScore : 3 0 6 7 33333 4 7 999 000 111 66 7 7 7 7 00 88 0 99999999999999999999 6 0 0 0 0 4444444444 0 000 0 0 0 8 0000000000000000000000000000 8 0 0 0 8 66666666666666 88 777 0 00000000000 0 0000000000 0 555555 00000 0 7 4444 0 2 55 00000 555 88 2 0 2222 0 0 2 888888888 0 5 2 555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555 777 22222 8888 22222 333 7 222 777 00000000000000000000000000000000000000000 7 0 000 0 22222222222 0 8888888888888888 0000000 0 0 8 6 2 0 0 0 44 0 0 88 0 8 22222 99999999999999 000000000000 5 0000 8 88 2 0 333 3 33 77 7 333 333 7 00000000000 0 88888 00000 2222 2 0 22 2 0 00 000000000 0 0 0 55 00000000 2 22 00000 0 00 00 4 6 0 88 0 00 00 0 7 3333333333333 7 000000000000000000000000000000 3 0 55555 22 5 44 6 6 0000000000000 4 0 0 22222 4 2222222222222222222 6 4 00 0 8888 0000000000000000 8 00 33333 7 5 444444444 7 7 000 7 7 7 77 7 8 1 888888 0 222 7 777 99 3333 22 7 0 99999 55555 0
consensus : TAATGGACATGTACTAAGGAAACAGGGGCGC-ACAA-----GGTAATA-CC-AATCCCCCGC-T-TGCTATA-C-TGGAC-TTTTAAAA-AGGAAC-G--AC-AA-CTGAA--A-TTAACGAAA-G-A-TAAC-C-AAGT-T-GTA----TGTGATAC-AGTCAG---TCACT-A-A-AGTTATATCC----TGACGAGAG-CGTGTGTCTT--GACGACAAA-GTATTCGA-GGTATA-GTATATA-ATG-TATGAGGTATTTGTCATTCAA---TCTTC-GTGATATT--G---AA-TAT-AATTT-TTA--T-C-ACTTGAATGGAGGAAT-GTAG-ATTTT-T-G-TGACAA-CANACCT-C--AA-GAGCACAT-GTCCCGCT-A--CTTCCC--GAAATGATT-AGAAAGC-CTC--ACTAA-TGATTTC-TTCGAA-C-CGCTCTGTA-TATTCTGATGTC-AT------TCA--A---CAG----ATTAT----CA-----CAT---TT-CTACT--GCAA--TCCCG------CG--G--------------------CTG---CAAC---TTA----CGTTTTG--TTTTTTG--CC-T-T-TAACTGGCTTTT-T-ACA---C---A------------AA--------TCA-C------AC-GA-TTGGGGA--CTGGCATTC-TTG-T---TTT-GG-TTTATTCTAGCC-C-T-A---TT--TCCGACTTGC--A-T--G-TACGTTCTGATGAAAAAAAGTTCTACA-A-ATTCATT-GA-CCGCCGCCTTTATTTAA-TTGAAAAAAAAAATTTGATGAATGTTAT-T-TAT--TTAA-TAAAA-TAA-----AT-TTAAAAAAGGATTTTG--CAGGATTCG-AACACA-CTCCTCAGGATCAGT-ACAACA---CAAA---AACANACACNAC-ACAC---CACTT-CG-CG--TACCGTG-----ATT----TATAGTATTC-GGAGGTTTAA-ATTTGACTTC-ATAAAAGGGAGAAGT-A--AA---TG-CC-TA-AAGTTTTTCTTTAAAAA-GTGTGTTTTTTTGT-ATATAATGGGGGTC-CAGTCTC--CAT-TTTTTAAAAACATGAAAT-AGGATATACA-AGA-G--TTACA-CTATCCATTTGAAACCTTTCCTT-GGAG----AGACTTTGACCCCAC--TCATA-T-TCAA---A---C--TCAAT-TTTAATGG-CTAT-TTTACACACCT--ATTTTTCAATCAAAACTGCG--T-ATGGAGC--ATGTTTAA-CAACCCAAT-TATTAA--C----AAACCCTCGATTAATTTTAGNTATAA-G-AA-TCTAATT--TGGTGT-AGCCGAGATCACCGAC-TACT-TCA-TTTTTCACAAT-------TA-GAA-C---CGAATT-T-TTGGCA--TTTTG-AAATTTT---A-GAT-ATCCT-G-CGTCT-CAGAGC---G--GGATTTTGCCCCCGCCTTG-TGCGCCC---ATATTCTTTACCGAAAGTTT
Reference ( gi|1 ) : TAATGGACATGTACTAAGGAAATAGGGGCGC-ACAA-----GGCAATA-CC-A-TCCCTCGC-T-TGCTATA-C-TGGAC-TTTTAAAA-AGGAAC-G--AC-AA-CTGAA--A-TTAACGAAA-GCA-TAAC-C-AAGT-T-GTA----T-TGA-AC-AGTCAG---TCACT-A-A-AGTTATATCCC---TGACGAGAG-CG-GTGT-T---GATGACAAA-GTATTAGA-GGTATACGTATATACATG-TATGAGGTATTTGTCATTCAA---TCTTC-GTGATACT--G---A--TAT-AATTTATTA--T-C-ACTTGA-TGGAGGAAT-G-AG-ATTTTATTG-TGACAA-CAGACCT-C--AA-GAGCACAT-GTCCCGCT-A--CTTCC---GAAATGAT--AGAAAGC-CT---GCTAA-TGATTTC-TTCGAATC-CGCTC-GTA-TATTCTGATG---AT------TCA--A---CA-----ATTAT----CA-----CAT---TT-CTACT--GCAA--TCCCG------TG--G--------------------CT----TAAC---TTA----CGTTTTG--TTTTTTG--CC-T-T-TAACTGGCTTTT-T-ACA---C---A------------AA--------TCA-C------AC-GA-TTGGGG---CTGGCATTC-T-G-T---TT--GG-TTTATTCTAGCC-C-T-A---TT--TCGGACTTGC--A-T--G-TACATTCTGATGAAAAAAAATTCGACA-A-ATGCATT-GA-CCGCCGCCTTTATTTAA-TTGAAAAAAAAAATTTAATGAATGTTAT-T-TATTGTTAA-TAAAA-TAA-----AT-TTAAGAAAGGATTTTG--CAGGATTCG-AACA-A-CTCCTCAGGATCAG--ACAACA---CAAA---AACATACACCA--ACAC---CACTT-CG-CG--TACCGTG-----ATT----TATAATATTC-GGAGGTTTAATATTTGACTTC-ATAAAAGGAAGAAGT-A--A----TG-CC-TA-AAGTTTTTCTTTAAAAACGTGTGTTTTTTTGTAATATAAT--G--TC-CAGTCTC--CA--TTTTTAAAAACATGAAAT-AGGATATACA-AGA-G--TTACG-CTATCCATTT-AAACCTTTC------------GGACTTTGACCCCACG-TCATA-T-TCAA---A---C--TCAA--TTTAATGG-CTAT-TTT--AC-CCT--ATTTTTCAATCAAAACTGCG--T-ATGGAGC-TATGTCTAA-CA-CCCGAT-TATTAA--C----AAATTCTCAATTAATTTTAGA-ATAA-G-A--TCTAATTCTTGG-GT-AGTTTAGATCATCGAC-TACT-TCA-TTTTTCATAAT-------TA-GAA-C---CGAATT-T-TTGTCA-GTTTTG-AAATTTT---ATAAT-ATCCT-G-TGTCT-CAGAGC---G--GGATTCTGCCCCCGCCTTGTTGCG-CC---ATATTCTTT-CAAGAAATTT
gi|2 : TAATGGACATGTACTAAG-AAATAGGG-CGC-ACAA-----GGCAATA-CC-AATCCCTCGC-T-TGCTATA-CCTGGAC-TTTTAAAA-AGGAAC-G--AC-AA-CTGAA--AATTAACGAAA-G-A-TAACTC-AAGT-T-GTA----TGTGATAC-AGTCAG---TCACT-A-A-AGTTATATCC----TGACGAGAG-CGTGTGT-TT--GATGACAAA-GTATTAGA-GGTATACGTATATACATG-TATGAGGTATTTGTCATTCAA---TCTTCCGTGATA-T--G---AAATAT-AATTTATT-----C-ACTTGAATGGAGGAAT-G-GG-ATTTTAT-G-TGACAA-CAGACTA-C--AAAGAGCACAT--TCCCGC--A--CTTCCCGAAAAATGATT-AGAAAGC-CT---GCTAA-TGATTTC-TTCGAATCACGCTC-GTA-TATTCTGATG---AT------TCA--A---CA------TTAT----CA-----CAT---TT-CTACT--GCAAA-TCCCG------TG-----------------------CT----TAAC---TTA----CGTTTTGGTTTTTTTG--CC-C-T-TAACTGGCTTTT-TTACA---C---A------------AA--------TCA-C------AC-GA-TTGGGGA--CTGGCATTC-TTG-T---TTTTGG-TTTATTCTAGCC-C-TTA---TT--TTCGACTTGC--A-TAGG-TACATTCTGAT-AAAAAAAATTCGACA-A-AT-CATTTGA-CCGCCGCCTTTATTTAA-TTGAAAAAAAAAATTTA-TGAATGTTATAT-TATTGTTAAATAAAAATAA-----AT-TTAAGAAAGGATTTTG--CAGGATTCG-AACA-AACTCCTCAGGATCAG--ACAA-A---CAAA---AACATACACCA--A-AC---CACTT-CG-CG--TACCGTG-----ATT----TATAATATTC-GGAGGTTTAA-ATTTG-CTTC-ATAAAAGGAAGAAGT-A--AA---TG-CC-TA-AAGTTTTTCTTTAAAA-CGTGTGTTTTTT-GTATAATAAT--GGGTC-CAGTCTCAACA--TTTTTAAAAACATGAAAT-AGGATATACA-AGA-G--TTACG-CTATCCATTT-AAACCTTTC------------GGACTTTGACCCCACGTTCATA-TGTCAA---A---C--TCAATGTTTAATGG-CTAT-TTTACAC-CCT--ATTCT
gi|9 : aaaaaccccaaaCTAAG-AAACAAGGGCGCCACAA-----G-TAATA-CC------------------------TGGACCTTTTAAAACAGGAACCG--AC-AAACTGAACAACTTAACGAAAAGCACTAAC-CCAAGTGT-ATG----T-TGATAC-AGTCAG---TCACTTATA-AGTTGTATCC----TGACAAGAG-CGTGTGT-TTTTGATGACAAA-GTATTCGACGGT-----TATATA-----TATGAGGTATT-GTCATTCAA---TCTTC-GTGATA-T--GAAAA--TAT-AATTT-TTAATT-C-ATTTGA-TGGAGGAAT-T-A--ATTTTCTGC-TGACAA-Cgtatgttttttttaaagcagttgtacgtgttaa
gi|19 : gcTAAAGAA-TATGGGTGC-ACAAGTCAGGGCAA------A-TCTGTCGC-TCTGAGACA-C-AGGAT-ATCTAAAA-A
gi|13 : tAAGAAAACAGGG-CGC-ACAA-----GGTAATA-CCAA-TCACCCGC-C-TACTAC--C-TGGAC-TTTTAAAA-AGGAAC-G--AC-AA-CTGAA-----TAAC------------C-C-AAGT-T-GTA----TGTAATAC-AGTCAG---TCACT-A-A-AGTTATAC-------------------GTGTCT---GACGACAAA-GTATTTGA-GGTATATGT---------------GGTACTTGTCATTCAA---TCTTcaattt
gi|18 : AAAGAAACAGGG-CGC-ACAA-----GGTAATGCCC-A-TCCC-CGCTT-TGCTATACC-TGGAC-TTTTAAAA---GGAC-GAAACAAA-CTGA
gi|14 : aaaaatctgaaaaaagaacgaatatggAAGAAACAGGG-CGC-ACAA-----GGTAATA-CC-AATCACCCGC-C-TACTATC-C-TGGAC-TTTTAAAA-AGGAAC-G--AC--A-CTGA-----------------A-TAAC-C-AAGT-TGGTA----TGTAATAC-AGTCAG---TCACT-A-A-AG-TATAT--------AC---------GTGTCT---GACGAC-AA-GTATTTGA-GGTAT--------------TATGTGGTACTTGTCATTCAA---TCTT
gi|20 : GGGC-C-ACAA-----GGTAATA-CC-AATCCCCCGC-T-TGCTATA-C-CTGAC-TTTTTAAA-AGTAAC-
gi|5 : agaacaTAACGAAA-GAA--ACC-C-AAGT-T-GTAAAAATGTGATACCAGTCAGAAATCACT-A-ATATTTATATACTAAATGACAAGAGTCG-GTGT------ATGACAAATGTATGCGATGGTATA--TATATTGATGGTAT----TATTTGTCATTCAAGGTCCTTC-GTGATATGAAG---A--TATTAATTTTTTA--TTC-ACTTGAATGGAGGAATTGTAGTATTTT-TTGCTGACAAACATACCTAC--AA-AGACACATTATCCCGCT-AAACTTCCC--GAAATGAT--AG-AAGC-TTTA-ACTAATTGATTTCTTTCGAA-C-CGCTCTGTATTATTCTG-T----AT------TCT--A---CAG----GTTAT----CA-----CAT---AT-TTATTGAGCAATTTTTC-------TA--A--------------------CTGC--CAATCCGTTA----CGTTT----TTGTTTGCCCC-T-TATAACT-GCTTTT-T-ACA---C---AAAAAAACACAACAA--------TCATC------ACTGA-TTGGGA---CTGGTATTC-T-G-T---TT--GGTTTTATTCTAGCC-C-T-GATTTT--TC-GACTTGC--AGT--G-TACATCTTGATGAAAATAATTACTACA-A-AATCATT-GAGCCGCCGCCTTTA--TAA-TTGAAAAAAAAAATT--ATGAcga
gi|6 : GGTATCT----TTCAA---TCTTA-GTAATATT--A---AA-TAT-AATTC-TTA--T-TGATTTAAATGGAAAAAT-GTAG-ATTTT---G-TAACAT-CAAACCT-AGAAA-GTGCACAT-GTCTCGAT-A--CTCCCC--GATATGAT--AGAAAGCACT---ACTAA-TGACTTC-T--------------GTA-TATTCTGATGTTTAT------TCA--CTCTCAGTTTTATTATTGAGCA-----TTT---TT-CTACT--GCAA--TTCCGCGTTGCTG--GAGCAAAGTATTAAATGTTCTCT----CAAG---TTATATACGTTTTG--TTTTGT---CC-T-T-TAACTAG--TTT-A-ACA---C---A------------AA--------ACA-CAACCATAC-GACTTCGGG---ATGGCATTCTT-GTT---TT--AG-TTTTTTCTAACTGC-A-A---AT--TC-GACTTGC--A-T--G-TACG-TCTGGTG-AAAAAAGTTATGCAGA-AT-TATT-GA-ACGTCATCTTTA--TAA-TTGAAA
gi|3 : --AA-GAGCACAT-GTCCCGCTTA--CTTCCC--GAAATGATTAAGAAAGC-CTCCTACTAA-TGATTCT-TTCGAA-C-CGCTCTGTA-TATT-TGATATC-ATCAGTTATCACCA---TA-----ATTAT----TATTGAGCATCTGTT-CTACT--GCA---TCCCG------CT--GTT------------------CT----TAAC---TTA-----GTTT-G--TTTTGCG--CCCT-T-TAACTGCCTTTT-T-ACA---CCACA------------AACACACAATTCA-CC-----AC-GA-TTGGGGACTTTGGCATTC-T-A-TGTTTT--GG-TTTATTCTAGCC-CCT-A---TTCTTCG-ACTTGCCCA-T--GCTACAATCTGATGAAAAAAAATTCTACA-A-AATCATT-GA-CCGCCGCCTTTATTAAT-TTGAAAAAAAAAA-ATGATGAATGTTAT-TATATGCTT---TAAAA-TTA-----AA-ATAAAAA-------TG--CCAGGTTCGAAACACA-CTCC-CAGA--CAGT-ACAACA---CAAA---AATAAAAACTAC-ACGCTAACACTT-CGCCC--TACCGTG-----ATTCTAATAGAGTATTC-GGAGGTTTAAAATTTGACTTCAATAAAAGGGA-AAGT-AACA----TGCCC-TA-AAGTTT------------G-----TTTCTTGT-ATATAATGGG--TC-CAGTCTC--CATTTTTTTAAAAACATGATATCAGGATATACA-GAG-G--TAACA-CTAT-CATTTAAAACCTTTCCTTTAGAATGGGAGACTTTGA-CCCAC--TCATATT-TCAA---AACTT--TCAAT-TTTAGTGG-CTAT-TTTACAC-CCTTAATTTTTC-ATCAAAACTGCGGTT-AT-GAGC--GTGT-TAA-CA-CCCAATATATTAAGTC----AAA-CCTCAATTAA-TTTAGATATAAGG-A--TCTAA----TGT-GT-AG-TGAGATCACCGA---ACTCTCA-TTCTT-ACAAT-------TACGAA-C---CGAATT-T-TTGTCA--TTTTGAAAATTTT---A-GAT-ATCCT-G-GGTCT-CAGAGCGG-G--GGATTTTG-CCCCGCCTTG-TGCG-CC---
gi|8 : aca-----CAT---TTACTACT--GCTA--TGCCG------CGTTG--------------------CTGGAGCAAC---T-A----CGTTTTG--TTTT--G--CC-CAT-TAATTGATTTTTAT-ACAAAAC---AC-----------AA--------TCA-T------AC-AAATTGGGGG--CTGGCATTC-TTG-T---TTT-GG-TTTATTCTAGCC-G-T-A---TT--TTCGACTTGC--A-T--G-TACGTCCAG-TG--AAAAAGTTCTACA-ACAT-TATT-GA-CCGTCACCTTTA--TAATTTG---AAAAAAAT---ATGACTGTTA-----------AA-TAAAA-T--------T-TTAA-AAAGG-TCTTG--CAGGATTCG-AACA-cagatt
gi|15 : taacataatctttagAAC---TTA----TGTTTTT--GTTTTGG--CC-T-T-TTACTG-CTTTT-T-ACA---C----------------AA--------TCA-C------AC-GACTTGGGG---c
gi|4 : tcacatattattgagcatttttctactgccatcccgcgattctggagcaaagtatgtaaacatttgatcaaAA-TAAAA-TAATAAGAGTGTTAAAAAGGTATTTTAAACAGATTTCG-AACACA-CTCCTCAG-ATCAGTTACAACAGTACAAATATAACACACGCGT--A-AC---CACTTTCG-C---TACCGTGTATGGATT----CATAGCAT-C-GGAGGTGAAAT-TTTGACTTC-ATAAAAGTGAATAGT-A--AAAAATG-CCCTATAAGTTTT-CTTTAAAAA-GTGT-TTTTTTTGT--TATAAT--GGGTCATAGTCTC--CA--TTTTTAAAAACA-GAAAT-AGGATATAC--AGA-GGTTTACATCCAGTCATTTGAAACCTTTCTTTAGAAG----AGACTATGACCGCAC---CA-A-C-GCAAAGTA---CTGTCAAT-TTTAAAGGCCTATGTTT--ACACCT--ATTTTTC-ATCAAAACTGAG--T--T-GAGCTTATGTTTAATCA-CCC-AT-TATTAAT-C----AAA-CCTCAATTAA-CTTAGATATAA-GAA--TCTAATTTTTGGTGTGAGTTGAGATCACCGAC-TACT-CGATTTTTTCATAA--------TA-GAA-CGCGCAGATTGT-TTGTCA--TTTTG-AAATTTT---A-AGTGATCCT-GTTGTCT-CAGAGCTG-G--GGATT-TGCCCCC-CGTTGTGCCGCCC---AGATTCTac
gi|12 : ACACAATCACAC---GACTT-GG-GGACTACCGTG-----ATT----TATAATATTCAAGAGGTTTAA-ATTCGACTCC-ATAAAAGGA--AAGTAA--A----TG-CC-TC-AAGTTTTTCTTTAAAAA-GTGTG-TTTTTTGT-ATAGAATGGG--GC-CAGTCTC--CAT-TTTTTTTAAACAGGAAAT-AGGATATACA-GAG-G--TTA
gi|7 : CTC--CA--TTTTTTAATACATGAAAT-AGGATATATACAGACG--TTACA-C
gi|7 : gg-TTT--ACACCT--ATTTTC--ATCAAAACTGCG--TCAT-GAGC-AATATTCAA-CA-CCC-AT-TATTAA--TTTTAAAAACCATAACTAATTTTAnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngtttacacctattttcatcaaaactgcgtcatgagcaatattcaacacccattattaattttaaaaaccataactaattttaatnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncaatttttacaatagagccgaatttttggcactttgaaaatttagatatcctgtgt
gi|11 : ggctccattttttaatacatgaaataggatatatacagacgttacacnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngT--ATTGTT-AATTCAACCTGCC--C--TGACGC--ATGT-TAA-CAACCCAAT--ATAAT--C----AAAC---CG--TAATTTAAAT-ATAA-G-AA-TCTAATT--TGGTGT-AACCGAGATCACCAAC-TATT-T-A-TTTTGCACAAT--------A-GAA-C---CGAATT-T-TTGGCA--TTTAG-AAAATTT---A-GAT-ATCCT-T-CGTCT-CAGAGA---G--GTATTTT--CTCTGCCTTG-TGCG-CC---atnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncaatttttacaatagagccgaatttttggcactttgaaaatttagatatcctgtgt
gi|10 : ctcaaatcttttaaattcaatggtatgtaaccgaaagaattttctgaaT--ATTGTT-AATTCAACCTGCC--C--TGACGC--ATGT-TAA-CAACCCAAT--ATAAT--C----AAAC---CG--TAATTTAAAT-ATAA-G-AATCCTAATT--TGGTGT-AACCGAGATCA-CAACGTATT-T----TTTGCACAAT--------A-GAA-C---CGAATT-T-TTGGCA-TTTAAG-AAAAT------TGAT-ATCT----CGTCT-CATAGA---G--GTATTTT--CTCTGCCTTG-TGCGCCC---ATATTCca
gi|16 : ctcaaatcttttaaattcaatggtatgtaaccgaaagaattttctgaaGAT-ACCGA--TACT--CA-TTATTTACAACAATACAGTA-GAA-C---CGCATT-T-TTGGCATTTTTTA-AAATTGTAGAATAAT-ATCCTCG-TGT-T-CAGAGCGAAG--GGATT-TGCCCaa
gi|7 : agtgtagtcatgatcacCA-ATTTTTACAAT--------A-GAG-C---CGAATT-T-TTGGCA--CTTTG-AAAATTT---A-GAT-ATCCT-G-TGT
gi|17 : ggctccattttttaatacatgaaataggatatatacagacgttacacnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngtttacacctattttcatcaaaactgcgtcatgagcaatattcaacacccattattaattttaaaaaccataactaattttaatnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnAAA-------TA-GAAAC---CGAACT-TGTTGTCA-ATTTTG-AAATTTT---A-GAT-ATCCT-G-TGTCTCCAGAGC---G--GGGATTTGCCCCGACCTTGTGCCG-CCCAGA-ATTCTTT-TCGAAAGTTT
gi|19 : cTTTT---A-GAT-ATCCT-G-TGTCT-CAGAGC---GACAGATT-TG-CCCTGACTTG-TGCACCC---ATATTCTTTACAA
Alignments
lowQualScore : 2 11 333333 111111 1111 111 333333333333333333333333333 1 555555555555555 111 111111111 22222222 111 333333 2222 11 11 11 2 33333 1111 1 44444444444444444444444444 2222 11111 111 888888888888888888888888888888888888888888888 1111 111 111 11111 555555555555 111111 1 11 1 1 11 2222 555555555555555 2222222222 1 11 22 111 111 2222 111 11111 22222 1111 11 1111 1 22 44 22 1 888888888888 222 111 3333333333 11 1 1 22 55555555555555555555555555555555555555 1 111111 22 22222222 111111 111111 11 11111 222222222 11 222 1 11 1 1
lowQualScore : 9 5 5 22 11 5 00 5 5 5 5 99 6 6 444444 2 666666 6 6 6 4444 6 6 111 6 6 6 333333333333333333333333333 0 6 3 3 999999999999999 55 2 000 5 999999999 8 8 00000000 11 888 8 333333 8 1 5555 11 88 11 11 0 8 0 22222 8 88 7777 5 8 0 22222222222222222222222222 8888 44444 000 5 77 5 111111111111111111111111111111111111111111111 888 4 4444 5 555 5 000 33333 000000000000 5 5 666666 5 7 0 99 44 6 3 3 99 6 3 99 6 99 6 44 1 7 2 6 2 1 6 6 88 6 5555 444444444444444 8 4444444444 3 11 8 5 3 99 55 2 777 777 1 5555 5 444 8 99999 00000 7777 0 8 8 8 0 8 44 4444 8 6 8 0 0 88 0 00 88 8 00 8 99 22 3 6 6 6 99 8 6 9 444444444444 2 777 3 444 3333333333 33 0 3 0 5 77 66 99999999999999999999999999999999999999 1 6 1 666666 22 44444444 9 9 11 3 6 111111 5 5 555555 11 88888 1 777777777 5 5 888 5 5 2 66 5 5 4 9999 4 777 4 5 222 66 2 11 0 5 1 99 5
lowQualScore : . . . .. .. . .. . . . . .. . . ...... . ...... . . . .... . . ... . . . ........................... . . . . ............... .. . ... . ......... . . ........ .. ... . ...... . . .... .. .. .. .. . . . ..... . .. .... . . . .......................... .... ..... ... . .. . ............................................. ... . .... . ... . ... ..... ............ . . ...... . . . .. .. . . . .. . . .. . .. . .. . . . . . . . . .. . .... ............... . .......... . .. . . . .. .. . ... ... . .... . ... . ..... ..... .... . . . . . . .. .... . . . . . .. . .. .. . .. . .. .. . . . . .. . . . ............ . ... . ... .......... .. . . . . .. .. ...................................... . . . ...... .. ........ . . .. . . ...... . . ...... .. ..... . ......... . . ... . . . .. . . . .... . ... . . ... .. . .. . . . .. .
lowQualScore : 3 7 7 99 44 7 66 7 7 7 7 22 7 7 000000 5 888888 7 7 7 2222 7 7 777 7 7 7 777777777777777777777777777 7 7 7 3 222222222222222 88 3 000 7 666666666 0 0 00000000 66 666 0 888888 0 0 2222 22 88 00 00 4 0 8 44444 0 88 2222 4 0 8 00000000000000000000000000 3333 33333 000 7 99 7 999999999999999999999999999999999999999999999 666 9 6666 7 333 7 000 77777 000000000000 7 7 444444 7 1 1 22 00 7 2 3 22 7 3 22 7 22 7 22 7 3 2 7 2 0 7 7 55 7 6666 666666666666666 0 8888888888 6 00 0 0 2 88 55 5 555 555 0 6666 0 000 0 00000 00000 0000 8 0 0 0 8 0 22 8888 0 0 0 8 8 66 8 44 88 0 00 0 22 22 2 7 7 7 22 0 5 0 555555555555 5 000 2 888 8888888888 22 0 2 8 4 99 33 00000000000000000000000000000000000000 3 7 7 777777 55 55555555 0 0 88 3 7 888888 7 6 333333 66 77777 7 999999999 0 0 888 0 0 5 99 0 0 4 4444 4 222 4 0 555 99 6 22 4 7 4 77 5
consensus : TAATGGACATGTACTAAGGAAACAGGG-CGC-ACAAGGTAATACCAATCCCCCGC-TTGCTATA-C-TGGAC-TTTTAAAA-AGGAAC-G--AC-AA-CTGAA--A-TTAACGAAAG-A---TAAC-C-AAGTT-GTA----TGT-GATAC-AGTCAG---TCACT-A-A-AGTTATATCC-T----GACGAGAG-CGTGTG-T-TTGACGACAAA-GTATTCGA-GGTATA--TATAT-A-ATG-TATGAGGTATTTGTCATTCAA---TCTT-CGTGATATTG--AA--TAT-AATTT-TT-A--T-C-ACTTGAATGGAGGAAT-GTAG-ATTTTA-T-GCTGACAA-CAGACCT-C--AAGAGCACAT-GTCCCGCT-A--CTTCCCG--AAATGATTA-GAAAGCCTC--G-CTAAT-GATTTCTT-CGAA-C--CGCTCTGTAT-ATTCTGATGTT-AT------TCAA---CA-G----ATTAT----CA-----CAT---TT-CTACTG--C-AATCCCGC-G--GCTG---C--AA---------------C---T---------TACGTTTTG--TTTTTTGCC--T-T-TAACTGGC-TTTT-TACA---C---A-AA------------TCA-C-A------C-GA-TTGGGGACT--GGCATTCT-TG-TTTTGGTTTATTCTAGCCC-TA--TT-TTCGACTTGC--A-T--G-TACGTTCTGATGAAAAAAAATTCTACAA-AATCA-TTGA-CCGCCGCCTTTATTTAA-TTGAAAAAAAAAATTT-ATGAATGTTAT-T-TAT--T-T--AAT-AAAATAA-----AT-TTAAAAAAGGATTTTG--CAGGATTCG-AACACACTCCTCAGGATCAGT-ACAACA---CAAA---AACATACACNA-CACAC---CACTT-CG-CG--TACCGTG-----ATT----TATAATATTCG-GAGGTTT-AA-ATTTGACTTC-ATAAAAGGAAGAAGT---AA-ATGCCCTA-AAGTTTTTCTTTAAAAA-GTGTGTTTTTTTGT-AT-ATAAT--GGGTC-CAGTCTC--CA-TTTTTTAAAAACATGAAAT-AGGATATACA-AGA-G--TTACG-CTATCCATTTGAAACCTTTCCTT--G---GGGGGACTTTGACCCCACG-TCATA-T-TCAA---A---C--TCAAT-TTTAATGG-CTATTTTACACACCT--ATTTTTCAATCAAAACTGCG--T-ATGGAGC--ATGT-------------------TTAACAACC-CAAT-TA---TTAA--CAAACCCTCGATTAATTTTAGATATAAGAATC-TAA--T--TTGGTGT-AGTCGAGATCAC-----CGAC-TACT-TCA-TTTTTCACAAT-------TA-GAA-C---CGAATT-T-TTGNCA--TTT-TG-AAATTTTA-G----AT-ATCCTG-CGT-CT-CAGAGC---G--GGATTTTGCCCCCGCCTTG-TG-CGCCCAN-ATTCTTTACCGAAAGTTT
Reference ( family-1445 ) : TAATGGACATGTACTAAGGAAACAGGGGCGC-ACAAGGTAATACCAATCCCCCGC-TTGCTATA-C-TGGAC-TTTTAAAA-AGGAAC-G--AC-AA-CTGAA--A-TTAACGAAAG-A---TAAC-C-AAGTT-GTA----TGT-GATAC-AGTCAG---TCACT-A-A-AGTTATATCC-T----GACGAGAG-CGTGTG-TCTTGACGACAAA-GTATTCGA-GGTATA-GTATAT-A-ATG-TATGAGGTATTTGTCATTCAA---TCTT-CGTGATATTG--AA--TAT-AATTT-TT-A--T-C-ACTTGAATGGAGGAAT-GTAG-ATTTT--T-G-TGACAA-CANACCT-C--AAGAGCACAT-GTCCCGCT-A--CTTCCCG--AAATGATTA-GAAAGCCTC--A-CTAAT-GATTTCTT-CGAA-C--CGCTCTGTAT-ATTCTGATGTC-AT------TCAA---CA-G----ATTAT----CA-----CAT---TT-CTACTG--C-AATCCCGC-G--GCTG---C--AA---------------C---T---------TACGTTTTG--TTTTTTGCC--T-T-TAACTGGC-TTTT-TACA---C---A-AA------------TCA-C-A------C-GA-TTGGGGACT--GGCATTCT-TG-TTTTGGTTTATTCTAGCCC-TA--TT-TCCGACTTGC--A-T--G-TACGTTCTGATGAAAAAAAGTTCTACAA-ATTCA-TTGA-CCGCCGCCTTTATTTAA-TTGAAAAAAAAAATTTGATGAATGTTAT-T-TAT--T-T--AAT-AAAATAA-----AT-TTAAAAAAGGATTTTG--CAGGATTCG-AACACACTCCTCAGGATCAGT-ACAACA---CAAA---AACANACACNA-CACAC---CACTT-CG-CG--TACCGTG-----ATT----TATAGTATTCG-GAGGTTT-AA-ATTTGACTTC-ATAAAAGGGAGAAGT---AA-ATG-CCTA-AAGTTTTTCTTTAAAAA-GTGTGTTTTTTTGT-AT-ATAATGGGGGTC-CAGTCTC--CA-TTTTTTAAAAACATGAAAT-AGGATATACA-AGA-G--TTACA-CTATCCATTTGAAACCTTTCCTT--G---GAGAGACTTTGACCCCAC--TCATA-T-TCAA---A---C--TCAAT-TTTAATGG-CTATTTTACACACCT--ATTTTTCAATCAAAACTGCG--T-ATGGAGC--ATGT-------------------TTAACAACC-CAAT-TA---TTAA--CAAACCCTCGATTAATTTTAGNTATAAGAATC-TAA--T--TTGGTGT-AGCCGAGATCAC-----CGAC-TACT-TCA-TTTTTCACAAT-------TA-GAA-C---CGAATT-T-TTGGCA--TTT-TG-AAATTTTA-G----AT-ATCCTG-CGT-CT-CAGAGC---G--GGATTTTGCCCCCGCCTTG-TG-CGCCCAT-ATTCTTTACCGAAAGTTT
gi|1 : TAATGGACATGTACTAAGGAAATAGGGGCGC-ACAAGGCAATACCA-TCCCTCGC-TTGCTATA-C-TGGAC-TTTTAAAA-AGGAAC-G--AC-AA-CTGAA--A-TTAACGAAAGCA---TAAC-C-AAGTT-GTA----T-T-GA-AC-AGTCAG---TCACT-A-A-AGTTATATCCCT----GACGAGAG-CG-GTG-T--TGATGACAAA-GTATTAGA-GGTATACGTATAT-ACATG-TATGAGGTATTTGTCATTCAA---TCTT-CGTGATACTG--A---TAT-AATTTATT-A--T-C-ACTTGA-TGGAGGAAT-G-AG-ATTTTATT-G-TGACAA-CAGACCT-C--AAGAGCACAT-GTCCCGCT-A--CTTCC-G--AAATGAT-A-GAAAGCCT---G-CTAAT-GATTTCTT-CGAATC--CGCTC-GTAT-ATTCTGATG---AT------TCAA---CA------ATTAT----CA-----CAT---TT-CTACTG--C-AATCCCGT-G--GCT----T--AA---------------C---T---------TACGTTTTG--TTTTTTGCC--T-T-TAACTGGC-TTTT-TACA---C---A-AA------------TCA-C-A------C-GA-TTGGGG-CT--GGCATTCT--G-TTT-GGTTTATTCTAGCCC-TA--TT-TCGGACTTGC--A-T--G-TACATTCTGATGAAAAAAAATTCGACAA-ATGCA-TTGA-CCGCCGCCTTTATTTAA-TTGAAAAAAAAAATTTAATGAATGTTAT-T-TATTGT-T--AAT-AAAATAA-----AT-TTAAGAAAGGATTTTG--CAGGATTCG-AACA-ACTCCTCAGGATCAG--ACAACA---CAAA---AACATACACCA--ACAC---CACTT-CG-CG--TACCGTG-----ATT----TATAATATTCG-GAGGTTT-AATATTTGACTTC-ATAAAAGGAAGAAGT----A-ATG-CCTA-AAGTTTTTCTTTAAAAACGTGTGTTTTTTTGTAAT-ATAAT----GTC-CAGTCTC--CA--TTTTTAAAAACATGAAAT-AGGATATACA-AGA-G--TTACG-CTATCCATTT-AAACCTTTC------------GGACTTTGACCCCACG-TCATA-T-TCAA---A---C--TCAA--TTTAATGG-CTATTTTAC---CCT--ATTTTTCAATCAAAACTGCG--T-ATGGAGCT-ATGT-------------------CTAAC-ACC-CGAT-TA---TTAA--CAAATTCTCAATTAATTTTAGA-ATAAG-ATC-TAA--TTCTTGG-GT-AGTTTAGATCAT-----CGAC-TACT-TCA-TTTTTCATAAT-------TA-GAA-C---CGAATT-T-TTGTCAG-TTT-TG-AAATTTTATA----AT-ATCCTG-TGT-CT-CAGAGC---G--GGATTCTGCCCCCGCCTTGTTG-CG-CCAT-ATTCTTT
gi|10 : T--ATTGTT-AATTCAACCTGCC--C--TGACGC--ATGT-------------------T-AACAACC-CAAT--A---TAAT--CAAACC---G--TAATTT-AAATATAAGAATCCTAA--T--TTGGTGT-AACCGAGATCA------CAACGTATT-----TTTTGCACAA--------TA-GAA-C---CGAATT-T-TTGGCA--TTTAAG-AAAATT---G----AT-ATCT---CGT-CT-CATAGA---G--GTATTTT--CTCTGCCTTG-TG-CGCCCAT-ATTCcaagaaattt
gi|11 : ctcaaatcttttaaattcaatggtatgtaaccgaaagaattttctgaaT--ATTGTT-AATTCAACCTGCC--C--TGACGC--ATGT-------------------T-AACAACC-CAAT--A---TAAT--CAAACC---G--TAATTT-AAATATAAGAATC-TAA--T--TTGGTGT-AACCGAGATCAC-----CAAC-TATT-T-A-TTTTGCACAAT--------A-GAA-C---CGAATT-T-TTGGCA--TTT-AG-AAAATTTA-G----AT-ATCCTT-CGT-CT-CAGAGA---G--GTATTTT--CTCTGCCTTG-TG-CGCCCAaa
gi|12 : ctcaaatcttttaaattcaatggtatgtaaccgaaagaattttctgaaACACAATCACAC---GACTT-GG-GGACTACCGTG-----ATT----TATAATATTCAAGAGGTTT-AA-ATTCGACTCC-ATAAAAGGAA--AGT---AA-ATG-CCTC-AAGTTTTTCTTTAAAAA-GTGTG-TTTTTTGT-AT-AGAATGGGG--C-CAGTCTC--CA-TTTTTTTTAAACAGGAAAT-AGGATATACA-GAG-G--TTA
gi|13 : AAGAAAACAGGG-CGC-ACAAGGTAATACCAATCACCCGC-CTACTAC--C-TGGAC-TTTTAAAA-AGGAAC-G--AC-AA-CTGAA-----TAAC-------------C-C-AAGTT-GTA----TGT-AATAC-AGTCAG---TCACT-A-A-AGTTATA------------------CGTGT----CTGACGACAAA-GTATTTGA-GGTAT-----------ATG-T----GGTACTTGTCATTCAA---TCTT-
gi|14 : AAGAAACAGGG-CGC-ACAAGGTAATACCAATCACCCGC-CTACTATC-C-TGGAC-TTTTAAAA-AGGAAC-G--AC--A-CTGA----------------A---TAAC-C-AAGTTGGTA----TGT-AATAC-AGTCAG---TCACT-A-A-AG-TATAT---------AC---------GTG-TC-TGACGAC-AA-GTATTTGA-GGTAT---------------TATGTGGTACTTGTCATTCAA---TCTT-
gi|15 : A---CA-T----ATTATTGAGCA-----TTT---TT-CTACTG--C-CATCCCGC-G--
gi|15 : tc--AA---------------C---T---------TATGTTTTT--GTTTTGGCC--T-T-TTACTG-C-TTTT-TACA---C-----AA------------TCA-C-A------C-GACTTGGGGACattctggagcaaagtatgtaaacatttgatcaaaacttatgtttttgttttggccttttactgctttttacacaatcacacgacttggggac
gi|16 : tcacatattattgagcatttttctactgccatcccgcgattctggagcaaagtatgtaaacatttgatcaaGTGT-AGTCATGATCACGATACCGA--TACT--CA-TTATTTACAACAATACAGTA-GAA-C---CGCATT-T-TTGGCATTTTT-TA-AAATTGTA-GAATAAT-ATCCT--CGTGTT-CAGAGCGAAG--GGA-TTTGCCC
gi|17 : aCAAA-------TA-GAAAC---CGAACT-TGTTGTCAA-TTT-TG-AAATTTTA-G----AT-ATCCTG-TGT-CTCCAGAGC---G--GGGATTTGCCCCGACCTTG-TGCCGCCCAGAATTCTTT-TCGAAAGTTT
gi|18 : AAAGAAACAGGG-CGC-ACAAGGTAATGCCCAT-CCCCGCTTTGCTATACC-TGGAC-TTTTAAAA---GGAC-GAAACAAA-CTGA
gi|19 : aaaaatctgaaaaaagaacgaatatggTTTTA-G----AT-ATCCTG-TGT-CT-CAGAGC---GACAGA-TTTG-CCCTGACTTG-TG-CACCCAT-ATTCTTTA
gi|2 : ttTAATGGACATGTACTAAG-AAATAGGG-CGC-ACAAGGCAATACCAATCCCTCGC-TTGCTATA-CCTGGAC-TTTTAAAA-AGGAAC-G--AC-AA-CTGAA--AATTAACGAAAG-A---TAACTC-AAGTT-GTA----TGT-GATAC-AGTCAG---TCACT-A-A-AGTTATATCC-T----GACGAGAG-CGTGTG-T-TTGATGACAAA-GTATTAGA-GGTATACGTATAT-ACATG-TATGAGGTATTTGTCATTCAA---TCTTCCGTGATATGA--AA--TAT-AATTT-AT----T-C-ACTTGAATGGAGGAAT-G-GG-ATTTTA-T-G-TGACAA-CAGACTA-CA-AAGAGCACAT--TCCCGC--A--CTTCCCGAAAAATGATTA-GAAAGCCT---G-CTAAT-GATTTCTT-CGAA-TCACGCTC-GTAT-ATTCTGATG---AT------TCAA---C-------ATTAT----CA-----CAT---TT-CTACTG--CAAATCCCGT----GCT----T--AA---------------C---T---------TACGTTTTGGTTTTTTTGCC--C-T-TAACTGGCTTTTT-TACA---C---A-AA------------TCA-C-A------C-GA-TTGGGGACT--GGCATTCT-TGTTTTTGGTTTATTCTAGCCCTTA--TT-TTCGACTTGC--A-TAGG-TACATTCTGAT-AAAAAAAATTCGACAA-A-TCATTTGA-CCGCCGCCTTTATTTAA-TTGAAAAAAAAAATTT-ATGAATGTTATAT-TAT--TGTTAAATAAAAATAA-----AT-TTAAGAAAGGATTTTG--CAGGATTCG-AACAAACTCCTCAGGATCAG--ACAA-A---CAAA---AACATACAC---CAAAC---CACTT-CG-CG--TACCGTG-----ATT----TATAATATTCG-GAGGTTT-AA-ATTTG-CTTC-ATAAAAGGAAGAAGT---AA-ATG-CCTA-AAGTTTTTCTTTAAAAC-GTGTG-TTTTTTGT-ATAATAAT--GGGTC-CAGTCTCAACA--TTTTTAAAAACATGAAAT-AGGATATACA-AGA-G--TTACG-CTATCCATTT-AAACCTTTC------------GGACTTTGACCCCACGTTCATA-TGTCAA---A---C--TCAATGTTTAATGG-CTATTTTACAC-CCT--ATTCTaattt
gi|20 : aaaaaccccaaaAACAGGG-C-C-ACAAGGTAATACCAATCCCCCGC-TTGCTATA-C-CTGAC-TTTTTAAA-AGTAAC-gtatgttttttttaaagcagttgtacgtgttaa
gi|3 : ag--AAGAGCACAT-GTCCCGCTTA--CTTCCCG--AAATGATTAAGAAAGCCTCCTA-CTAAT-GATTCTTT-CGAA-C--CGCTCTGTAT-ATT-TGATATC-ATCAGTTATCAC---CATA----ATTAT----TATTGAGCATCTGTT-CTACTG--C-A-TCCCGC-T--GTT----CTTAA---------------C---T---------TA-GTTT-G--TTTTGCGCCC-T-T-TAACTGCC-TTTT-TACA---CCACA-AACACACAAT----TCA-CCA------C-GA-TTGGGGACTTTGGCATTCTATG-TTTTGGTTTATTCTAGCCCCTA--TTCTTCGACTTGCCCA-T--GCTACAATCTGATGAAAAAAAATTCTACAA-AATCA-TTGA-CCGCCGCCTTTATTAAT-TTGAAAAAAAAAA-ATGATGAATGTTAT-TATATGCT-T----T-AAAATTA-----AA-ATAAAAA-------TG--CCAGGTTCGAAACACACTCC-CAGA--CAGT-ACAACA---CAAA---AATAAAAACTA-CACGCTAACACTT-CGCCC--TACCGTG-----ATTCTAATAGAGTATTCG-GAGGTTTAAA-ATTTGACTTCAATAAAAGGGA-AAGT---AACATGCCCTA-AAGTTT------------G-----TTTCTTGT-AT-ATAAT--GGGTC-CAGTCTC--CATTTTTTTAAAAACATGATATCAGGATATACA-GAG-G--TAACA-CTAT-CATTTAAAACCTTTCCTTTAGAATGGGAGACTTTGA-CCCAC--TCATATT-TCAA---AACTT--TCAAT-TTTAGTGG-CTATTTTACAC-CCTTAATTTTTC-ATCAAAACTGCGGTT-AT-GAGC--GTG--------------------TTAAC-ACC-CAATATA---TTAAGTCAAA-CCTCAATTAA-TTTAGATATAAGGATC-TAA--T-----GTGT-AG-TGAGATCAC-----CGA---ACTCTCA-TTCTT-ACAAT-------TACGAA-C---CGAATT-T-TTGTCA--TTT-TGAAAATTTTA-G----AT-ATCCTG-GGT-CT-CAGAGCGG-G--GGATTTTG-CCCCGCCTTG-TG-CGCCCAG-ATTcga
gi|4 : aca--AAT-AAAATAATAAGAGTGTTAAAAAGGTATTTTAAACAGATTTCG-AACACACTCCTCAG-ATCAGTTACAACAGTACAAATATAACACACGCG--TA-AC---CACTTTCG-C---TACCGTGTATGGATT----CATAGCAT-CG-GAGGTGA-AA-TTTTGACTTC-ATAAAAGTGAATAGTAAAAA-ATGCCCTATAAG-TTTTCTTTAAAAA-GTGT-TTTTTTTGT--T-ATAAT--GGGTCATAGTCTC--CA--TTTTTAAAAACA-GAAAT-AGGATATAC--AGA-GGTTTACATCCAGTCATTTGAAACCTTTCTTTA-G---AAGAGACTATGACCGCAC---CA-A-C-GCAAAGTA---CTGTCAAT-TTTAAAGGCCTATGTT-TACACCT--ATTTTTC-ATCAAAACTGAG--T--T-GAGCTTATGT-------------------TTAATCACC-C-AT-TA---TTAAT-CAAA-CCTCAATTAA-CTTAGATATAAGAATC-TAATTT--TTGGTGTGAGTTGAGATCAC-----CGAC-TACT-CGATTTTTTCATAA--------TA-GAA-CGCGCAGATTGT-TTGTCA--TTT-TG-AAATTTTA-A----GTGATCCTGTTGT-CT-CAGAGCTG-G--GGA-TTTGCCCCC-CGTTG-TGCCGCCCAG-ATTCT
gi|5 : TAACGAAAG-A---AACC-C-AAGTT-GTAAAAATGT-GATACCAGTCAGAAATCACT-A-ATATTTATATAC-TAAATGACAAGAGTCG-GTG-T----ATGACAAATGTATGCGATGGTATA--TATATTG-ATGGTAT----TATTTGTCATTCAAGGTCCTT-CGTGATAT-G--AAGATATTAATTT-TTTA--TTC-ACTTGAATGGAGGAATTGTAGTATTTT--TTGCTGACAAACATACCTAC--AAAGACACATTATCCCGCT-AAACTTCCCG--AAATGAT-A-GAA-GCTTT--AACTAATTGATTTCTTTCGAA-C--CGCTCTGTATTATTCTG----T-AT------TCTA---CA-G----GTTAT----CA-----CAT---AT-TTATTGAGC-AATTTTTCTA--ACTG---CC-AA---------------TCCGT---------TACGTTTT----TGTTTGCCCCT-TATAACTG-C-TTTT-TACA---C---A-AAAAAACACAACAATCATC-A------CTGA-TTGGG-ACT--GGTATTCT--G-TTTGGTTTTATTCTAGCCC-TGATTT-TTCGACTTGC--AGT--G-TACATCTTGATGAAAATAATTACTACAA-AATCA-TTGAGCCGCCGCCTTTA--TAA-TTGAAAAAAAAAATT--ATGA
gi|6 : GGTATCT----TTCAA---TCTT-AGTAATATTA--AA--TAT-AATTC-TT-A--T-TGATTTAAATGGAAAAAT-GTAG-ATTTT----G-TAACAT-CAAACCT-AGAAAGTGCACAT-GTCTCGAT-A--CTCCCCG--ATATGAT-A-GAAAGCACT--A-CTAAT-GACTTCT----------------GTAT-ATTCTGATGTTTAT------TCACTCTCA-GTTTTATTATTGAGCA-----TTT---TT-CTACTG--C-AATTCCGC-GTTGCTGGAGC--AAAGTATTAAATGTTCTC---TCAAGTTATATACGTTTTG--TTTTGT-CC--T-T-TAACTAG---TTT-AACA---C---A-AA------------ACA-C-AACCATAC-GACTTCGGGA-T--GGCATTCT-TG-TTTTAGTTTTTTCTAACTG-CA--AA-TTCGACTTGC--A-T--G-TACG-TCTGGTG-AAAAAAGTTATGCAG-AATTA-TTGA-ACGTCATCTTTA--TAA-TTGAAA
gi|7 : CTC--CA-TTTTTTAATA-CATGAAAT-AGGATATATACAGACG--TTACA-C
gi|7 : ggACACCT--ATTTTC--ATCAAAACTGCG--TCATG-AGCA-ATATTCAACACCCATTATTAATTTTAAAAACCATAAC-TAATTTTAAT-NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN-NNN--N--NNNNNNN-NNNNNNNNNNNN-----NNNN-NNNN-NCA-ATTTTTACAAT--------A-GAG-C---CGAATT-T-TTGGCA--CTT-TG-AAAATTTA-G----AT-ATCCTG-TGT-nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngtttacacctattttcatcaaaactgcgtcatgagcaatattcaacacccattattaattttaaaaaccataactaattttaatnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncaatttttacaatagagccgaatttttggcactttgaaaatttagatatcctgtgt
gi|8 : ggctccattttttaatacatgaaataggatatatacagacgttacacnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngttt-----CAT---TTACTACTG--C-TATGCCGC-GTTGCTGGAGC--AA---------------C---T----------ACGTTTTG--TTTT--GCC--CAT-TAATTGAT-TTTTATACAAAAC---ACAA------------TCA-T-A------C-AAATTGGGGGCT--GGCATTCT-TG-TTTTGGTTTATTCTAGCCG-TA--TT-TTCGACTTGC--A-T--G-TACGTCCAG-TG--AAAAAGTTCTACAACATT-A-TTGA-CCGTCACCTTTA--TAATTTG---AAAAAAAT---ATGACTGTTA--------------AAT-AAAAT--------T-TTAAAAA--GGTCTTG--CAGGATTCG-AACAC
gi|9 : taacataatctttagCTAAG-AAACAAGGGCGCCACAAG-TAATACC----------------------TGGACCTTTTAAAACAGGAACCG--AC-AAACTGAACAACTTAACGAAAA-GCACTAAC-CCAAGT--GTA----TGTTGATAC-AGTCAG---TCACTTATA-AGTTGTATCC-T----GACAAGAG-CGTGTGTTTTTGATGACAAA-GTATTCGACGGT-----TATAT-A-----TATGAGGTA-TTGTCATTCAA---TCTT-CGTGATA-TGAAAA--TAT-AATTT-TT-AATT-C-ATTTG-ATGGAGGAAT--TAA-TTTTC--T-GCTGACAA-C
Alignments
lowQualScore : 11 333333 111111 1111 111 33333333333333333333 1111 1 55555555555555 111 111111111 22222222 222222 1 2222 11 11 11 2 33333 1111 1 33333333333333333333333333 2222 11111 111 888888888888888888888888888888888888888888888 1111 111 111 11111 555555555555 111111 1 11 1 11 1 555555555555555 2222222222 1 11 22 1 222222222 111 11111 22222 1111 11 111 1 11 22 1 888888888888 22 111 3333333333 11 1 1 22 55555555555555555555555555555555555555 1 111111 22 22222222 111111 111111 11 11111 222222222 11 222 1 11 1 1
lowQualScore : 9 5 5 5 22 11 5 00 5 5 5 5 99 6 6 444444 2 666666 6 6 6 4444 6 6 111 6 6 6 22222222222222222222 6666 0 6 3 3 66666666666666 55 2 000 5 999999999 8 8 00000000 11 000000 4 5 8 0 5555 11 88 11 11 0 8 0 55555 8 88 7777 5 8 0 99999999999999999999999999 8888 44444 000 5 77 5 111111111111111111111111111111111111111111111 888 4 4444 5 555 5 000 33333 000000000000 5 5 666666 5 7 0 99 44 6 3 3 99 6 99 6 99 6 44 1 7 0 6 6 88 6 0 0 8 444444444444444 8 4444444444 3 11 8 5 3 99 55 2 0 8 333333333 444 8 99999 00000 7777 0 8 8 8 0 8 44 0 8 444 0 8 66 88 0 00 3 88 8 8 99 22 3 6 6 6 99 8 6 9 444444444444 2 55 3 444 3333333333 33 0 3 0 5 77 66 99999999999999999999999999999999999999 1 6 1 666666 22 44444444 9 9 0 3 6 111111 5 3 555555 11 88888 1 777777777 5 5 888 5 5 1 66 5 5 4 9999 4 777 4 5 222 66 2 11 0 5 1 66 5
lowQualScore : . . . . .. .. . .. . . . . .. . . ...... . ...... . . . .... . . ... . . . .................... .... . . . . .............. .. . ... . ......... . . ........ .. ...... . . . . .... .. .. .. .. . . . ..... . .. .... . . . .......................... .... ..... ... . .. . ............................................. ... . .... . ... . ... ..... ............ . . ...... . . . .. .. . . . .. . .. . .. . .. . . . . . .. . . . . ............... . .......... . .. . . . .. .. . . . ......... ... . ..... ..... .... . . . . . . .. . . ... . . .. .. . .. . .. . . .. .. . . . . .. . . . ............ . .. . ... .......... .. . . . . .. .. ...................................... . . . ...... .. ........ . . . . . ...... . . ...... .. ..... . ......... . . ... . . . .. . . . .... . ... . . ... .. . .. . . . .. .
lowQualScore : 3 7 7 7 99 44 7 66 7 7 7 7 22 7 7 000000 5 888888 7 7 7 2222 7 7 777 7 7 7 00000000000000000000 5555 7 7 7 3 88888888888888 88 3 000 7 666666666 0 0 00000000 66 666666 0 0 0 2 2222 22 88 00 00 4 0 8 00000 0 88 2222 4 0 8 22222222222222222222222222 3333 33333 000 7 99 7 999999999999999999999999999999999999999999999 666 9 6666 7 333 7 000 77777 000000000000 7 7 444444 7 1 1 22 00 7 2 3 22 7 22 7 22 7 22 7 3 3 7 7 55 7 8 8 0 666666666666666 0 8888888888 6 00 0 0 2 88 55 5 0 0 444444444 000 0 00000 00000 0000 8 0 0 0 8 0 22 8 0 000 0 0 44 66 8 66 8 88 0 0 22 22 2 7 7 7 22 0 5 0 222222222222 5 00 2 888 8888888888 22 0 2 8 4 99 33 00000000000000000000000000000000000000 3 7 7 777777 55 55555555 0 0 8 3 7 888888 7 3 333333 66 77777 7 999999999 0 0 888 0 0 0 99 0 0 4 4444 4 222 4 0 555 99 6 22 4 7 4 77 5
consensus : TAATGGACATGTACTAAGGAAACA-GGG-CGC-ACAAGGTAATACCAATCCCCCGC-TTGCTATA-C-TGGAC-TTTTAAAA-AGGAAC-G--AC-AA-CTGAA--A-TTAACGAAAG-A---TAAC-C-AAGTT-GTA----TGT-GATAC-AGTCAG---TCACT-A-A-AGTTATATCC-T----GACGAGAG-CGCGTGTTT--GACGACAAA-GTATTCGA-GGTATA--TATAT-A-ATG-TATGAGGTATTTGTCATTCAA---TCTT-CGTGATATTG--AA--TAT-AATTT-TT-A--T-C-ACTTGAATGGAGGAAT-GTAG-ATTTTNTGCTGACAA-CAGACCT-C--AAGAGCACAT-GTCCCGCT-A--CTTCCCG--AAATGATTA-GAAAGCCTC--G-CTAAT-GATTTCTT-CGAA-C--CGCTCTGTAT-ATTCTGATGTT-AT------TCAA---CA-G----ATTAT----CA-----CAT---TT-CTACTG--C-AATCCCGC-G--GCTG---C--AA---------------C---T---------TACGTTTTG--TTTTTTGCC--T-T-TAACTGGC-TTTT-TACA---C---A-AA------------TCA-C-A------C-GA-TTGGGGACT--GGCATTCT-TG-TTTTGGTTTATTCTAGCCC-TA--TT-TTCGACTTGC--A-T--G-TACGTTCTGATGAAAAAAAATTCTACAAAATCA-TTGA-CCGCCGCCTTTATTTAA-TTGAAAAAAAAAATTT-ATGAATGTTAT-T-TAT--T-T--AAT-AAAATAA-----AT-TTAAAAAAGGATTTTG--CAGGATTCG-AACACACTCCTCAGGATCAGT-ACAACA-CAAAAACATA-CAC-A-CAC---AC---CACTT-CG-CG--TACCGTG-----ATT----TATAATATTCG-GAGGTTT-AA-ATTTGACTTC-ATAAAAGGAAGAAGTAA-A---TGCCCTA-AAGTTTTTCTTTAAAAA-GTGTGTTTTTTTGT-AT-ATAATGGGTC-CAGTCTC--CA-TTTTTTAAAAACATGAAAT-AGGATATACA-AGA-G--TTACG-CTATCCATTTGAAACCTTTCCTT--G---GGGGGACTTTGACCCCACG-TCATA-T-TCAA---A---C--TCAAT-TTTAATGG-CTATTTTACACACCT--ATTTTTCAATCAAAACTGCG--T-ATGGAGC--ATGT-------------------TTAACAACC-CAAT-TA---TTAA--CAAACCCTCGATTAATTTTAGATATAAGAATC-TAA--T--TTGGTGT-AGTCGAGATCAC-----CGAC-TACT-TCA-TTTTTCACAAT-------TA-GAA-C---CGAATT-T-TTGNCA--TTT-TG-AAATTTTA-G----AT-ATCCTG-CGT-CT-CAGAGC---G--GGATTTTGCCCCCGCCTTG-TG-CGCCCA-NATTCTTTACCGAAAGTTT
Reference ( family-1445 ) : TAATGGACATGTACTAAGGAAACA-GGG-CGC-ACAAGGTAATACCAATCCCCCGC-TTGCTATA-C-TGGAC-TTTTAAAA-AGGAAC-G--AC-AA-CTGAA--A-TTAACGAAAG-A---TAAC-C-AAGTT-GTA----TGT-GATAC-AGTCAG---TCACT-A-A-AGTTATATCC-T----GACGAGAG-CGTGTGTTT--GACGACAAA-GTATTCGA-GGTATA--TATAT-A-ATG-TATGAGGTATTTGTCATTCAA---TCTT-CGTGATATTG--AA--TAT-AATTT-TT-A--T-C-ACTTGAATGGAGGAAT-GTAG-ATTTTATGCTGACAA-CAGACCT-C--AAGAGCACAT-GTCCCGCT-A--CTTCCCG--AAATGATTA-GAAAGCCTC--G-CTAAT-GATTTCTT-CGAA-C--CGCTCTGTAT-ATTCTGATGTT-AT------TCAA---CA-G----ATTAT----CA-----CAT---TT-CTACTG--C-AATCCCGC-G--GCTG---C--AA---------------C---T---------TACGTTTTG--TTTTTTGCC--T-T-TAACTGGC-TTTT-TACA---C---A-AA------------TCA-C-A------C-GA-TTGGGGACT--GGCATTCT-TG-TTTTGGTTTATTCTAGCCC-TA--TT-TTCGACTTGC--A-T--G-TACGTTCTGATGAAAAAAAATTCTACAAAATCA-TTGA-CCGCCGCCTTTATTTAA-TTGAAAAAAAAAATTT-ATGAATGTTAT-T-TAT--T-T--AAT-AAAATAA-----AT-TTAAAAAAGGATTTTG--CAGGATTCG-AACACACTCCTCAGGATCAGT-ACAACA-CAAAAACATA-CACNA-CAC---AC---CACTT-CG-CG--TACCGTG-----ATT----TATAATATTCG-GAGGTTT-AA-ATTTGACTTC-ATAAAAGGAAGAAGTAA-A---TGCCCTA-AAGTTTTTCTTTAAAAA-GTGTGTTTTTTTGT-AT-ATAATGGGTC-CAGTCTC--CA-TTTTTTAAAAACATGAAAT-AGGATATACA-AGA-G--TTACG-CTATCCATTTGAAACCTTTCCTT--G---GGGGGACTTTGACCCCACG-TCATA-T-TCAA---A---C--TCAAT-TTTAATGG-CTATTTTACACACCT--ATTTTTCAATCAAAACTGCG--T-ATGGAGC--ATGT-------------------TTAACAACC-CAAT-TA---TTAA--CAAACCCTCGATTAATTTTAGATATAAGAATC-TAA--T--TTGGTGT-AGTCGAGATCAC-----CGAC-TACT-TCA-TTTTTCACAAT-------TA-GAA-C---CGAATT-T-TTGNCA--TTT-TG-AAATTTTA-G----AT-ATCCTG-CGT-CT-CAGAGC---G--GGATTTTGCCCCCGCCTTG-TG-CGCCCA-NATTCTTTACCGAAAGTTT
gi|1 : TAATGGACATGTACTAAGGAAATA-GGGGCGC-ACAAGGCAATACCA-TCCCTCGC-TTGCTATA-C-TGGAC-TTTTAAAA-AGGAAC-G--AC-AA-CTGAA--A-TTAACGAAAGCA---TAAC-C-AAGTT-GTA----T-T-GA-AC-AGTCAG---TCACT-A-A-AGTTATATCCCT----GACGAGAG-CG-GTGTT---GATGACAAA-GTATTAGA-GGTATACGTATAT-ACATG-TATGAGGTATTTGTCATTCAA---TCTT-CGTGATACTG--A---TAT-AATTTATT-A--T-C-ACTTGA-TGGAGGAAT-G-AG-ATTTTATTGTGACAA-CAGACCT-C--AAGAGCACAT-GTCCCGCT-A--CTTCC-G--AAATGAT-A-GAAAGCCT---G-CTAAT-GATTTCTT-CGAATC--CGCTC-GTAT-ATTCTGATG---AT------TCAA---CA------ATTAT----CA-----CAT---TT-CTACTG--C-AATCCCGT-G--GCT----T--AA---------------C---T---------TACGTTTTG--TTTTTTGCC--T-T-TAACTGGC-TTTT-TACA---C---A-AA------------TCA-C-A------C-GA-TTGGGG-CT--GGCATTCT--G-TTT-GGTTTATTCTAGCCC-TA--TT-TCGGACTTGC--A-T--G-TACATTCTGATGAAAAAAAATTCGACAAATGCA-TTGA-CCGCCGCCTTTATTTAA-TTGAAAAAAAAAATTTAATGAATGTTAT-T-TATTGT-T--AAT-AAAATAA-----AT-TTAAGAAAGGATTTTG--CAGGATTCG-AACA-ACTCCTCAGGATCAG--ACAACA-CAAAAACATA-CACCA--AC---AC---CACTT-CG-CG--TACCGTG-----ATT----TATAATATTCG-GAGGTTT-AATATTTGACTTC-ATAAAAGGAAGAAGT-A-A---TG-CCTA-AAGTTTTTCTTTAAAAACGTGTGTTTTTTTGTAAT-ATAAT--GTC-CAGTCTC--CA--TTTTTAAAAACATGAAAT-AGGATATACA-AGA-G--TTACG-CTATCCATTT-AAACCTTTC------------GGACTTTGACCCCACG-TCATA-T-TCAA---A---C--TCAA--TTTAATGG-CTATTTTAC---CCT--ATTTTTCAATCAAAACTGCG--T-ATGGAGCT-ATGT-------------------CTAAC-ACC-CGAT-TA---TTAA--CAAATTCTCAATTAATTTTAGA-ATAAG-ATC-TAA--TTCTTGG-GT-AGTTTAGATCAT-----CGAC-TACT-TCA-TTTTTCATAAT-------TA-GAA-C---CGAATT-T-TTGTCAG-TTT-TG-AAATTTTATA----AT-ATCCTG-TGT-CT-CAGAGC---G--GGATTCTGCCCCCGCCTTGTTG-CG-CCA-TATTCTTT
gi|10 : T--ATTGTT-AATTCAACCTGCC--C--TGACGC--ATGT-------------------T-AACAACC-CAAT--A---TAAT--CAAACC---G--TAATTT-AAATATAAGAATCCTAA--T--TTGGTGT-AACCGAGATCA------CAACGTATT-----TTTTGCACAA--------TA-GAA-C---CGAATT-T-TTGGCA--TTTAAG-AAAATT---G----AT-ATCT---CGT-CT-CATAGA---G--GTATTTT--CTCTGCCTTG-TG-CGCCCA-TATTCcaagaaattt
gi|11 : ctcaaatcttttaaattcaatggtatgtaaccgaaagaattttctgaaT--ATTGTT-AATTCAACCTGCC--C--TGACGC--ATGT-------------------T-AACAACC-CAAT--A---TAAT--CAAACC---G--TAATTT-AAATATAAGAATC-TAA--T--TTGGTGT-AACCGAGATCAC-----CAAC-TATT-T-A-TTTTGCACAAT--------A-GAA-C---CGAATT-T-TTGGCA--TTT-AG-AAAATTTA-G----AT-ATCCTT-CGT-CT-CAGAGA---G--GTATTTT--CTCTGCCTTG-TG-CGCCCA-aa
gi|12 : ctcaaatcttttaaattcaatggtatgtaaccgaaagaattttctgaaA-CACAATCAC---AC---GACTT-GG-GGACTACCGTG-----ATT----TATAATATTCAAGAGGTTT-AA-ATTCGACTCC-ATAAAAGGAA--AGTAA-A---TGCC-TC-AAGTTTTTCTTTAAAAA-GTGTGTTTT-TTGT-AT-AGAATGGGGC-CAGTCTC--CA-TTTTTTTTAAACAGGAAAT-AGGATATACA-GAG-G--TTA
gi|13 : AAGAAAACA-GGG-CGC-ACAAGGTAATACCAATCACCCGC-CTACTAC--C-TGGAC-TTTTAAAA-AGGAAC-G--AC-AA-CTGAA-----TAAC-------------C-C-AAGTT-GTA----TGT-AATAC-AGTCAG---TCACT-A-A-AGTTATA--------------------CGTGTCT--GACGACAAA-GTATTTGA-GGTATA--TGT--------------GGTACTTGTCATTCAA---TCTT-
gi|14 : AAGAAACA-GGG-CGC-ACAAGGTAATACCAATCACCCGC-CTACTATC-C-TGGAC-TTTTAAAA-AGGAAC-G--AC--A-CTGA----------------A---TAAC-C-AAGTTGGTA----TGT-AATAC-AGTCAG---TCACT-A-A-AG-TATAT---------AC---------GTGTCT--GACGAC-AA-GTATTTGA-GGTAT---------------TATGTGGTACTTGTCATTCAA---TCTT-
gi|15 : A---CA-T----ATTATTGAGCA-----TTT---TT-CTACTG--C-CATCCCGC-G--
gi|15 : tc--AA---------------C---T---------TATGTTTTT--GTTTTGGCC--T-T-TTACTG-C-TTTT-TACA---C-----AA------------TCA-C-A------C-GACTTGGGGACattctggagcaaagtatgtaaacatttgatcaaaacttatgtttttgttttggccttttactgctttttacacaatcacacgacttggggac
gi|16 : tcacatattattgagcatttttctactgccatcccgcgattctggagcaaagtatgtaaacatttgatcaaGTGT-AGTCATGATCACGATACCGA--TACT--CA-TTATTTACAACAATACAGTA-GAA-C---CGCATT-T-TTGGCATTTTT-TA-AAATTGTA-GAATAAT-ATCCT--CGTGTT-CAGAGCGAAG--GGA-TTTGCCC
gi|17 : aCAAA-------TA-GAAAC---CGAACT-TGTTGTCAA-TTT-TG-AAATTTTA-G----AT-ATCCTG-TGT-CTCCAGAGC---G--GGGATTTGCCCCGACCTTG-TGCCGCCCAGAATTCTTT-TCGAAAGTTT
gi|18 : AAAGAAACA-GGG-CGC-ACAAGGTAATGCCCAT-CCCCGCTTTGCTATACC-TGGAC-TTTTAAAA---GGAC-GAAACAAA-CTGA
gi|19 : aaaaatctgaaaaaagaacgaatatggTTTTA-G----AT-ATCCTG-TGT-CT-CAGAGC---GACAGA-TTTG-CCCTGACTTG-TG-CACCCA-TATTCTTTA
gi|2 : ttTAATGGACATGTACTAAG-AAATA-GGG-CGC-ACAAGGCAATACCAATCCCTCGC-TTGCTATA-CCTGGAC-TTTTAAAA-AGGAAC-G--AC-AA-CTGAA--AATTAACGAAAG-A---TAACTC-AAGTT-GTA----TGT-GATAC-AGTCAG---TCACT-A-A-AGTTATATCC-T----GACGAGAG-CGTGTGTTT--GATGACAAA-GTATTAGA-GGTATACGTATAT-ACATG-TATGAGGTATTTGTCATTCAA---TCTTCCGTGATATGA--AA--TAT-AATTT-AT----T-C-ACTTGAATGGAGGAAT-G-GG-ATTTTATG-TGACAA-CAGACTA-CA-AAGAGCACAT--TCCCGC--A--CTTCCCGAAAAATGATTA-GAAAGCCT---G-CTAAT-GATTTCTT-CGAA-TCACGCTC-GTAT-ATTCTGATG---AT------TCAA---C-------ATTAT----CA-----CAT---TT-CTACTG--CAAATCCCGT----GCT----T--AA---------------C---T---------TACGTTTTGGTTTTTTTGCC--C-T-TAACTGGCTTTTT-TACA---C---A-AA------------TCA-C-A------C-GA-TTGGGGACT--GGCATTCT-TGTTTTTGGTTTATTCTAGCCCTTA--TT-TTCGACTTGC--A-TAGG-TACATTCTGAT-AAAAAAAATTCGAC-AAATCATTTGA-CCGCCGCCTTTATTTAA-TTGAAAAAAAAAATTT-ATGAATGTTATAT-TAT--TGTTAAATAAAAATAA-----AT-TTAAGAAAGGATTTTG--CAGGATTCG-AACAAACTCCTCAGGATCAG--ACAA-A-CAAAAACATA-CAC---CAA---AC---CACTT-CG-CG--TACCGTG-----ATT----TATAATATTCG-GAGGTTT-AA-ATTTG-CTTC-ATAAAAGGAAGAAGTAA-A---TG-CCTA-AAGTTTTTCTTTAAAAC-GTGTG-TTTTTTGT-ATAATAATGGGTC-CAGTCTCAACA--TTTTTAAAAACATGAAAT-AGGATATACA-AGA-G--TTACG-CTATCCATTT-AAACCTTTC------------GGACTTTGACCCCACGTTCATA-TGTCAA---A---C--TCAATGTTTAATGG-CTATTTTACAC-CCT--ATTCTaattt
gi|20 : aaaaaccccaaaAACA-GGG-C-C-ACAAGGTAATACCAATCCCCCGC-TTGCTATA-C-CTGAC-TTTTTAAA-AGTAAC-gtatgttttttttaaagcagttgtacgtgttaa
gi|3 : ag--AAGAGCACAT-GTCCCGCTTA--CTTCCCG--AAATGATTAAGAAAGCCTCCTA-CTAAT-GATTCTTT-CGAA-C--CGCTCTGTAT-ATT-TGATATC-ATCAGTTATCAC---CATA----ATTAT----TATTGAGCATCTGTT-CTACTG--C-A-TCCCGC-T--GTT----CTTAA---------------C---T---------TA-GTTT-G--TTTTGCGCCC-T-T-TAACTGCC-TTTT-TACA---CCACA-AACACACAAT----TCA-CCA------C-GA-TTGGGGACTTTGGCATTCTATG-TTTTGGTTTATTCTAGCCCCTA--TTCTTCGACTTGCCCA-T--GCTACAATCTGATGAAAAAAAATTCTACAAAATCA-TTGA-CCGCCGCCTTTATTAAT-TTGAAAAAAAAAAATG-ATGAATGTTAT-TATATGCT-T----T-AAAATTA-----AA-ATAAAAA-------TG--CCAGGTTCGAAACACACTCC-CAGA--CAGT-ACAACA-CAAAAATAAA-AACTA-CAC---GCTAACACTT-CGCCC--TACCGTG-----ATTCTAATAGAGTATTCG-GAGGTTTAAA-ATTTGACTTCAATAAAAGGGA-AAGTAACA---TGCCCTA-AAGTTT------------G-----TTTCTTGT-AT-ATAATGGGTC-CAGTCTC--CATTTTTTTAAAAACATGATATCAGGATATACA-GAG-G--TAACA-CTAT-CATTTAAAACCTTTCCTTTAGAATGGGAGACTTTGA-CCCAC--TCATATT-TCAA---AACTT--TCAAT-TTTAGTGG-CTATTTTACAC-CCTTAATTTTTC-ATCAAAACTGCGGTT-AT-GAGC--GTG--------------------TTAAC-ACC-CAATATA---TTAAGTCAAA-CCTCAATTAA-TTTAGATATAAGGATC-TAA--T-----GTGT-AGT-GAGATCAC-----CGA---ACTCTCA-TTCTT-ACAAT-------TACGAA-C---CGAATT-T-TTGTCA--TTT-TGAAAATTTTA-G----AT-ATCCTG-GGT-CT-CAGAGCGG-G--GGATTTTG-CCCCGCCTTG-TG-CGCCCA-GATTcga
gi|4 : aca--AAT-AAAATAATAAGAGTGTTAAAAAGGTATTTTAAACAGATTTCG-AACACACTCCTCAG-ATCAGTTACAACAGTACAAATATAACAC-A-CGCGTAAC---CACTTTCG-C---TACCGTGTATGGATT----CATAGCAT-CG-GAGGTGA-AA-TTTTGACTTC-ATAAAAGTGAATAGTAA-AAAATGCCCTATAAGTTTT-CTTTAAAAA-GTGT-TTTTTTTGT--T-ATAATGGGTCATAGTCTC--CA--TTTTTAAAAACA-GAAAT-AGGATATAC--AGA-GGTTTACATCCAGTCATTTGAAACCTTTCTTTA-G---AAGAGACTATGACCGCAC---CA-A-C-GCAAAGTA---CTGTCAAT-TTTAAAGGCCTATGTT-TACACCT--ATTTTTC-ATCAAAACTGAG--T--T-GAGCTTATGT-------------------TTAATCACC-C-AT-TA---TTAAT-CAAA-CCTCAATTAA-CTTAGATATAAGAATC-TAATTT--TTGGTGTGAGTTGAGATCAC-----CGAC-TACT-CGATTTTTTCATAA--------TA-GAA-CGCGCAGATTGT-TTGTCA--TTT-TG-AAATTTTA-A----GTGATCCTGTTGT-CT-CAGAGCTG-G--GGA-TTTGCCCCC-CGTTG-TGCCGCCCA-GATTCT
gi|5 : TAACGAAAG-A---AACC-C-AAGTT-GTAAAAATGT-GATACCAGTCAGAAATCACT-A-ATATTTATATAC-TAAATGACAAGAGTCG-GTGT-----ATGACAAATGTATGCGATGGTATA--TATATTG-ATGGTAT----TATTTGTCATTCAAGGTCCTT-CGTGATAT-G--AAGATATTAATTT-TTTA--TTC-ACTTGAATGGAGGAATTGTAGTATTTTTTGCTGACAAACATACCTAC--AAAGACACATTATCCCGCT-AAACTTCCCG--AAATGAT-A-GAA-GCTTT--AACTAATTGATTTCTTTCGAA-C--CGCTCTGTATTATTCTG----T-AT------TCTA---CA-G----GTTAT----CA-----CAT---AT-TTATTGAGC-AATTTTTCTA--ACTG---CC-AA---------------TCCGT---------TACGTTTT----TGTTTGCCCCT-TATAACTG-C-TTTT-TACA---C---A-AAAAAACACAACAATCATC-A------CTGA-TTGGG-ACT--GGTATTCT--G-TTTGGTTTTATTCTAGCCC-TGATTT-TTCGACTTGC--AGT--G-TACATCTTGATGAAAATAATTACTACAAAATCA-TTGAGCCGCCGCCTTTA--TAA-TTGAAAAAAAAAA-TT-ATGA
gi|6 : GGTATCT----TTCAA---TCTT-AGTAATATTA--AA--TAT-AATTC-TT-A--T-TGATTTAAATGGAAAAAT-GTAG-ATTTTGTA---ACAT-CAAACCT-AGAAAGTGCACAT-GTCTCGAT-A--CTCCCCG--ATATGAT-A-GAAAGCACT--A-CTAAT-GACTTCT----------------GTAT-ATTCTGATGTTTAT------TCACTCTCA-GTTTTATTATTGAGCA-----TTT---TT-CTACTG--C-AATTCCGC-GTTGCTGGAGC--AAAGTATTAAATGTTCTC---TCAAGTTATATACGTTTTG--TTTTGT-CC--T-T-TAACTAG---TTT-AACA---C---A-AA------------ACA-C-AACCATAC-GACTTCGGGA-T--GGCATTCT-TG-TTTTAGTTTTTTCTAACTG-CA--AA-TTCGACTTGC--A-T--G-TACG-TCTGGTG-AAAAAAGTTATGCAGAATTA-TTGA-ACGTCATCTTTA--TAA-TTGAAA
gi|7 : CTC--CA-TTTTTTAATA-CATGAAAT-AGGATATATACAGACG--TTACA-C
gi|7 : ggACACCT--ATTTTC--ATCAAAACTGCG--TCATG-AGCA-ATATTCAACACCCATTATTAATTTTAAAAACCATAAC-TAATTTTAAT-NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN-NNN--N--NNNNNNN-NNNNNNNNNNNN-----NNNN-NNNN-NCA-ATTTTTACAAT--------A-GAG-C---CGAATT-T-TTGGCA--CTT-TG-AAAATTTA-G----AT-ATCCTG-TGT-nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngtttacacctattttcatcaaaactgcgtcatgagcaatattcaacacccattattaattttaaaaaccataactaattttaatnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncaatttttacaatagagccgaatttttggcactttgaaaatttagatatcctgtgt
gi|8 : ggctccattttttaatacatgaaataggatatatacagacgttacacnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngttt-----CAT---TTACTACTG--C-TATGCCGC-GTTGCTGGAGC--AA---------------C---T----------ACGTTTTG--TTTT--GCC--CAT-TAATTGAT-TTTTATACAAAAC---ACAA------------TCA-T-A------C-AAATTGGGGGCT--GGCATTCT-TG-TTTTGGTTTATTCTAGCCG-TA--TT-TTCGACTTGC--A-T--G-TACGTCCAG-TG--AAAAAGTTCTACAACATTA-TTGA-CCGTCACCTTTA--TAATTTGAAAAAAA-----T-ATGACTGTTA--------------AAT-AAAAT--------T-TTAAAAA--GGTCTTG--CAGGATTCG-AACAC
gi|9 : taacataatctttagCTAAG-AAACAAGGG-CGCCACAAG-TAATACC----------------------TGGACCTTTTAAAACAGGAACCG--AC-AAACTGAACAACTTAACGAAAA-GCACTAAC-CCAAGT--GTA----TGTTGATAC-AGTCAG---TCACTTATA-AGTTGTATCC-T----GACAAGAG-CGTGTGTTTTTGATGACAAA-GTATTCGACGGT-TA--TATA--------TATGAGGTA-TTGTCATTCAA---TCTT-CGTGATA-TGAAAA--TAT-AATTT-TT-AATT-C-ATTTG-ATGGAGGAAT--TA--ATTTTCTGCTGACAA-C
Alignments
lowQualScore : 11 333333 111111 1111 111 33333333333333333333 1111 1 55555555555555 111 111111111 22222222 222222 1 2222 11 11 11 2 33333 1111 1 33333333333333333333333333 2222 11111 111 888888888888888888888888888888888888888888888 1111 111 111 11111 555555555555 111111 1 11 1 11 1 555555555555555 2222222222 1 11 22 1 2222 111 111 11111 22222 1111 11 111 1 11 22 1 888888888888 22 111 3333333333 11 1 1 22 55555555555555555555555555555555555555 1 111111 22 22222222 111111 111111 11 11111 222222222 11 222 1 11 1 1
lowQualScore : 9 5 5 5 22 11 5 00 5 5 5 5 99 6 6 444444 2 666666 6 6 6 4444 6 6 111 6 6 6 22222222222222222222 6666 0 6 3 3 66666666666666 55 2 000 5 999999999 8 8 00000000 11 000000 1 5 8 0 5555 11 88 11 11 0 8 0 55555 8 88 7777 5 8 0 99999999999999999999999999 8888 44444 000 5 77 5 111111111111111111111111111111111111111111111 888 4 4444 5 555 5 000 33333 000000000000 5 5 666666 5 7 0 99 44 6 3 3 99 6 99 6 99 6 44 1 7 0 6 6 88 6 0 0 8 444444444444444 8 4444444444 3 11 8 5 3 99 55 2 0 8 4444 444 444 8 99999 00000 7777 0 8 8 8 0 8 44 0 8 444 0 8 66 88 0 00 3 88 8 8 99 22 3 6 6 6 99 8 6 9 444444444444 2 55 3 444 3333333333 33 0 3 0 5 77 66 99999999999999999999999999999999999999 1 6 1 666666 22 44444444 9 9 0 3 6 111111 5 3 555555 11 88888 1 777777777 5 5 888 5 5 1 66 5 5 4 9999 4 777 4 5 222 66 2 11 0 5 1 66 5
lowQualScore : . . . . .. .. . .. . . . . .. . . ...... . ...... . . . .... . . ... . . . .................... .... . . . . .............. .. . ... . ......... . . ........ .. ...... . . . . .... .. .. .. .. . . . ..... . .. .... . . . .......................... .... ..... ... . .. . ............................................. ... . .... . ... . ... ..... ............ . . ...... . . . .. .. . . . .. . .. . .. . .. . . . . . .. . . . . ............... . .......... . .. . . . .. .. . . . .... ... ... . ..... ..... .... . . . . . . .. . . ... . . .. .. . .. . .. . . .. .. . . . . .. . . . ............ . .. . ... .......... .. . . . . .. .. ...................................... . . . ...... .. ........ . . . . . ...... . . ...... .. ..... . ......... . . ... . . . .. . . . .... . ... . . ... .. . .. . . . .. .
lowQualScore : 3 7 7 7 99 44 7 66 7 7 7 7 22 7 7 000000 5 888888 7 7 7 2222 7 7 777 7 7 7 77777777777777777777 5555 7 7 7 3 88888888888888 88 3 000 7 666666666 0 0 00000000 66 666666 0 0 0 2 2222 22 88 00 00 4 0 8 00000 0 88 2222 4 0 8 22222222222222222222222222 3333 33333 000 7 99 7 999999999999999999999999999999999999999999999 666 9 6666 7 333 7 000 77777 000000000000 7 7 444444 7 1 1 22 00 7 2 3 22 7 22 7 22 7 22 7 3 3 7 7 55 7 8 8 0 666666666666666 0 8888888888 6 00 0 0 2 88 55 5 0 0 6666 000 000 0 00000 00000 0000 8 0 0 0 8 0 22 8 0 000 0 0 44 66 8 66 8 88 0 0 22 22 2 7 7 7 22 0 5 0 222222222222 5 00 2 888 8888888888 22 0 2 8 4 99 33 00000000000000000000000000000000000000 3 7 7 777777 55 55555555 0 0 8 3 7 888888 7 3 333333 66 77777 7 999999999 0 0 888 0 0 0 99 0 0 4 4444 4 222 4 0 555 99 6 22 4 7 4 77 5
consensus : TAATGGACATGTACTAAGGAAACA-GGG-CGC-ACAAGGTAATACCAATCCCCCGC-TTGCTATA-C-TGGAC-TTTTAAAA-AGGAAC-G--AC-AA-CTGAA--A-TTAACGAAAG-A---TAAC-C-AAGTT-GTA----TGT-GATAC-AGTCAG---TCACT-A-A-AGTTATATCC-T----GACGAGAG-CGCGTGTTT--GACGACAAA-GTATTCGA-GGTATA--TATAT-A-ATG-TATGAGGTATTTGTCATTCAA---TCTT-CGTGATATTG--AA--TAT-AATTT-TT-A--T-C-ACTTGAATGGAGGAAT-GTAG-ATTTTNTGCTGACAA-CAGACCT-C--AAGAGCACAT-GTCCCGCT-A--CTTCCCG--AAATGATTA-GAAAGCCTC--G-CTAAT-GATTTCTT-CGAA-C--CGCTCTGTAT-ATTCTGATGTT-AT------TCAA---CA-G----ATTAT----CA-----CAT---TT-CTACTG--C-AATCCCGC-G--GCTG---C--AA---------------C---T---------TACGTTTTG--TTTTTTGCC--T-T-TAACTGGC-TTTT-TACA---C---A-AA------------TCA-C-A------C-GA-TTGGGGACT--GGCATTCT-TG-TTTTGGTTTATTCTAGCCC-TA--TT-TTCGACTTGC--A-T--G-TACGTTCTGATGAAAAAAAATTCTACAAAATCA-TTGA-CCGCCGCCTTTATTTAA-TTGAAAAAAAAAATTT-ATGAATGTTAT-T-TAT--T-T--AAT-AAAATAA-----AT-TTAAAAAAGGATTTTG--CAGGATTCG-AACACACTCCTCAGGATCAGT-ACAACA-CAAAAACATA-CAC-A--CAC---AC---CACTT-CG-CG--TACCGTG-----ATT----TATAATATTCG-GAGGTTT-AA-ATTTGACTTC-ATAAAAGGAAGAAGTAA-A---TGCCCTA-AAGTTTTTCTTTAAAAA-GTGTGTTTTTTTGT-AT-ATAATGGGTC-CAGTCTC--CA-TTTTTTAAAAACATGAAAT-AGGATATACA-AGA-G--TTACG-CTATCCATTTGAAACCTTTCCTT--G---GGGGGACTTTGACCCCACG-TCATA-T-TCAA---A---C--TCAAT-TTTAATGG-CTATTTTACACACCT--ATTTTTCAATCAAAACTGCG--T-ATGGAGC--ATGT-------------------TTAACAACC-CAAT-TA---TTAA--CAAACCCTCGATTAATTTTAGATATAAGAATC-TAA--T--TTGGTGT-AGTCGAGATCAC-----CGAC-TACT-TCA-TTTTTCACAAT-------TA-GAA-C---CGAATT-T-TTGNCA--TTT-TG-AAATTTTA-G----AT-ATCCTG-CGT-CT-CAGAGC---G--GGATTTTGCCCCCGCCTTG-TG-CGCCCA-NATTCTTTACCGAAAGTTT
Reference ( family-1445 ) : TAATGGACATGTACTAAGGAAACA-GGG-CGC-ACAAGGTAATACCAATCCCCCGC-TTGCTATA-C-TGGAC-TTTTAAAA-AGGAAC-G--AC-AA-CTGAA--A-TTAACGAAAG-A---TAAC-C-AAGTT-GTA----TGT-GATAC-AGTCAG---TCACT-A-A-AGTTATATCC-T----GACGAGAG-CGCGTGTTT--GACGACAAA-GTATTCGA-GGTATA--TATAT-A-ATG-TATGAGGTATTTGTCATTCAA---TCTT-CGTGATATTG--AA--TAT-AATTT-TT-A--T-C-ACTTGAATGGAGGAAT-GTAG-ATTTTNTGCTGACAA-CAGACCT-C--AAGAGCACAT-GTCCCGCT-A--CTTCCCG--AAATGATTA-GAAAGCCTC--G-CTAAT-GATTTCTT-CGAA-C--CGCTCTGTAT-ATTCTGATGTT-AT------TCAA---CA-G----ATTAT----CA-----CAT---TT-CTACTG--C-AATCCCGC-G--GCTG---C--AA---------------C---T---------TACGTTTTG--TTTTTTGCC--T-T-TAACTGGC-TTTT-TACA---C---A-AA------------TCA-C-A------C-GA-TTGGGGACT--GGCATTCT-TG-TTTTGGTTTATTCTAGCCC-TA--TT-TTCGACTTGC--A-T--G-TACGTTCTGATGAAAAAAAATTCTACAAAATCA-TTGA-CCGCCGCCTTTATTTAA-TTGAAAAAAAAAATTT-ATGAATGTTAT-T-TAT--T-T--AAT-AAAATAA-----AT-TTAAAAAAGGATTTTG--CAGGATTCG-AACACACTCCTCAGGATCAGT-ACAACA-CAAAAACATA-CAC-A--CAC---AC---CACTT-CG-CG--TACCGTG-----ATT----TATAATATTCG-GAGGTTT-AA-ATTTGACTTC-ATAAAAGGAAGAAGTAA-A---TGCCCTA-AAGTTTTTCTTTAAAAA-GTGTGTTTTTTTGT-AT-ATAATGGGTC-CAGTCTC--CA-TTTTTTAAAAACATGAAAT-AGGATATACA-AGA-G--TTACG-CTATCCATTTGAAACCTTTCCTT--G---GGGGGACTTTGACCCCACG-TCATA-T-TCAA---A---C--TCAAT-TTTAATGG-CTATTTTACACACCT--ATTTTTCAATCAAAACTGCG--T-ATGGAGC--ATGT-------------------TTAACAACC-CAAT-TA---TTAA--CAAACCCTCGATTAATTTTAGATATAAGAATC-TAA--T--TTGGTGT-AGTCGAGATCAC-----CGAC-TACT-TCA-TTTTTCACAAT-------TA-GAA-C---CGAATT-T-TTGNCA--TTT-TG-AAATTTTA-G----AT-ATCCTG-CGT-CT-CAGAGC---G--GGATTTTGCCCCCGCCTTG-TG-CGCCCA-NATTCTTTACCGAAAGTTT
gi|1 : TAATGGACATGTACTAAGGAAATA-GGGGCGC-ACAAGGCAATACCA-TCCCTCGC-TTGCTATA-C-TGGAC-TTTTAAAA-AGGAAC-G--AC-AA-CTGAA--A-TTAACGAAAGCA---TAAC-C-AAGTT-GTA----T-T-GA-AC-AGTCAG---TCACT-A-A-AGTTATATCCCT----GACGAGAG-CG-GTGTT---GATGACAAA-GTATTAGA-GGTATACGTATAT-ACATG-TATGAGGTATTTGTCATTCAA---TCTT-CGTGATACTG--A---TAT-AATTTATT-A--T-C-ACTTGA-TGGAGGAAT-G-AG-ATTTTATTGTGACAA-CAGACCT-C--AAGAGCACAT-GTCCCGCT-A--CTTCC-G--AAATGAT-A-GAAAGCCT---G-CTAAT-GATTTCTT-CGAATC--CGCTC-GTAT-ATTCTGATG---AT------TCAA---CA------ATTAT----CA-----CAT---TT-CTACTG--C-AATCCCGT-G--GCT----T--AA---------------C---T---------TACGTTTTG--TTTTTTGCC--T-T-TAACTGGC-TTTT-TACA---C---A-AA------------TCA-C-A------C-GA-TTGGGG-CT--GGCATTCT--G-TTT-GGTTTATTCTAGCCC-TA--TT-TCGGACTTGC--A-T--G-TACATTCTGATGAAAAAAAATTCGACAAATGCA-TTGA-CCGCCGCCTTTATTTAA-TTGAAAAAAAAAATTTAATGAATGTTAT-T-TATTGT-T--AAT-AAAATAA-----AT-TTAAGAAAGGATTTTG--CAGGATTCG-AACA-ACTCCTCAGGATCAG--ACAACA-CAAAAACATA-CAC-C--AAC---AC---CACTT-CG-CG--TACCGTG-----ATT----TATAATATTCG-GAGGTTT-AATATTTGACTTC-ATAAAAGGAAGAAGT-A-A---TG-CCTA-AAGTTTTTCTTTAAAAACGTGTGTTTTTTTGTAAT-ATAAT--GTC-CAGTCTC--CA--TTTTTAAAAACATGAAAT-AGGATATACA-AGA-G--TTACG-CTATCCATTT-AAACCTTTC------------GGACTTTGACCCCACG-TCATA-T-TCAA---A---C--TCAA--TTTAATGG-CTATTTTAC---CCT--ATTTTTCAATCAAAACTGCG--T-ATGGAGCT-ATGT-------------------CTAAC-ACC-CGAT-TA---TTAA--CAAATTCTCAATTAATTTTAGA-ATAAG-ATC-TAA--TTCTTGG-GT-AGTTTAGATCAT-----CGAC-TACT-TCA-TTTTTCATAAT-------TA-GAA-C---CGAATT-T-TTGTCAG-TTT-TG-AAATTTTATA----AT-ATCCTG-TGT-CT-CAGAGC---G--GGATTCTGCCCCCGCCTTGTTG-CG-CCA-TATTCTTT
gi|10 : T--ATTGTT-AATTCAACCTGCC--C--TGACGC--ATGT-------------------T-AACAACC-CAAT--A---TAAT--CAAACC---G--TAATTT-AAATATAAGAATCCTAA--T--TTGGTGT-AACCGAGATCA------CAACGTATT-----TTTTGCACAA--------TA-GAA-C---CGAATT-T-TTGGCA--TTTAAG-AAAATT---G----AT-ATCT---CGT-CT-CATAGA---G--GTATTTT--CTCTGCCTTG-TG-CGCCCA-TATTCcaagaaattt
gi|11 : ctcaaatcttttaaattcaatggtatgtaaccgaaagaattttctgaaT--ATTGTT-AATTCAACCTGCC--C--TGACGC--ATGT-------------------T-AACAACC-CAAT--A---TAAT--CAAACC---G--TAATTT-AAATATAAGAATC-TAA--T--TTGGTGT-AACCGAGATCAC-----CAAC-TATT-T-A-TTTTGCACAAT--------A-GAA-C---CGAATT-T-TTGGCA--TTT-AG-AAAATTTA-G----AT-ATCCTT-CGT-CT-CAGAGA---G--GTATTTT--CTCTGCCTTG-TG-CGCCCA-aa
gi|12 : ctcaaatcttttaaattcaatggtatgtaaccgaaagaattttctgaaA-CAC-AATCAC---AC---GACTT-GG-GGACTACCGTG-----ATT----TATAATATTCAAGAGGTTT-AA-ATTCGACTCC-ATAAAAGGAA--AGTAA-A---TGCC-TC-AAGTTTTTCTTTAAAAA-GTGTGTTTT-TTGT-AT-AGAATGGGGC-CAGTCTC--CA-TTTTTTTTAAACAGGAAAT-AGGATATACA-GAG-G--TTA
gi|13 : AAGAAAACA-GGG-CGC-ACAAGGTAATACCAATCACCCGC-CTACTAC--C-TGGAC-TTTTAAAA-AGGAAC-G--AC-AA-CTGAA-----TAAC-------------C-C-AAGTT-GTA----TGT-AATAC-AGTCAG---TCACT-A-A-AGTTATA--------------------CGTGTCT--GACGACAAA-GTATTTGA-GGTATA--TGT--------------GGTACTTGTCATTCAA---TCTT-
gi|14 : AAGAAACA-GGG-CGC-ACAAGGTAATACCAATCACCCGC-CTACTATC-C-TGGAC-TTTTAAAA-AGGAAC-G--AC--A-CTGA----------------A---TAAC-C-AAGTTGGTA----TGT-AATAC-AGTCAG---TCACT-A-A-AG-TATAT------------------ACGTGTCT--GACGAC-AA-GTATTTGA-GGTAT---------------TATGTGGTACTTGTCATTCAA---TCTT-
gi|15 : A---CA-T----ATTATTGAGCA-----TTT---TT-CTACTG--C-CATCCCGC-G--
gi|15 : tc--AA---------------C---T---------TATGTTTTT--GTTTTGGCC--T-T-TTACTG-C-TTTT-TACA---C-----AA------------TCA-C-A------C-GACTTGGGGACattctggagcaaagtatgtaaacatttgatcaaaacttatgtttttgttttggccttttactgctttttacacaatcacacgacttggggac
gi|16 : tcacatattattgagcatttttctactgccatcccgcgattctggagcaaagtatgtaaacatttgatcaaGTGT-AGTCATGATCACGATACCGA--TACT--CA-TTATTTACAACAATACAGTA-GAA-C---CGCATT-T-TTGGCATTTTT-TA-AAATTGTA-GAATAAT-ATCCT--CGTGTT-CAGAGCGAAG--GGA-TTTGCCC
gi|17 : aCAAA-------TA-GAAAC---CGAACT-TGTTGTCAA-TTT-TG-AAATTTTA-G----AT-ATCCTG-TGT-CTCCAGAGC---G--GGGATTTGCCCCGACCTTG-TGCCGCCCAGAATTCTTT-TCGAAAGTTT
gi|18 : AAAGAAACA-GGG-CGC-ACAAGGTAATGCCCAT-CCCCGCTTTGCTATACC-TGGAC-TTTTAAAA---GGAC-GAAACAAA-CTGA
gi|19 : aaaaatctgaaaaaagaacgaatatggTTTTA-G----AT-ATCCTG-TGT-CT-CAGAGC---GACAGA-TTTG-CCCTGACTTG-TG-CACCCA-TATTCTTTA
gi|2 : ttTAATGGACATGTACTAAG-AAATA-GGG-CGC-ACAAGGCAATACCAATCCCTCGC-TTGCTATA-CCTGGAC-TTTTAAAA-AGGAAC-G--AC-AA-CTGAA--AATTAACGAAAG-A---TAACTC-AAGTT-GTA----TGT-GATAC-AGTCAG---TCACT-A-A-AGTTATATCC-T----GACGAGAG-CGTGTGTTT--GATGACAAA-GTATTAGA-GGTATACGTATAT-ACATG-TATGAGGTATTTGTCATTCAA---TCTTCCGTGATATGA--AA--TAT-AATTT-AT----T-C-ACTTGAATGGAGGAAT-G-GG-ATTTTATG-TGACAA-CAGACTA-CA-AAGAGCACAT--TCCCGC--A--CTTCCCGAAAAATGATTA-GAAAGCCT---G-CTAAT-GATTTCTT-CGAA-TCACGCTC-GTAT-ATTCTGATG---AT------TCAA---C-------ATTAT----CA-----CAT---TT-CTACTG--CAAATCCCGT----GCT----T--AA---------------C---T---------TACGTTTTGGTTTTTTTGCC--C-T-TAACTGGCTTTTT-TACA---C---A-AA------------TCA-C-A------C-GA-TTGGGGACT--GGCATTCT-TGTTTTTGGTTTATTCTAGCCCTTA--TT-TTCGACTTGC--A-TAGG-TACATTCTGAT-AAAAAAAATTCGAC-AAATCATTTGA-CCGCCGCCTTTATTTAA-TTGAAAAAAAAAATTT-ATGAATGTTATAT-TAT--TGTTAAATAAAAATAA-----AT-TTAAGAAAGGATTTTG--CAGGATTCG-AACAAACTCCTCAGGATCAG--ACAA-A-CAAAAACATA-CAC----CAA---AC---CACTT-CG-CG--TACCGTG-----ATT----TATAATATTCG-GAGGTTT-AA-ATTTG-CTTC-ATAAAAGGAAGAAGTAA-A---TG-CCTA-AAGTTTTTCTTTAAAAC-GTGTG-TTTTTTGT-ATAATAATGGGTC-CAGTCTCAACA--TTTTTAAAAACATGAAAT-AGGATATACA-AGA-G--TTACG-CTATCCATTT-AAACCTTTC------------GGACTTTGACCCCACGTTCATA-TGTCAA---A---C--TCAATGTTTAATGG-CTATTTTACAC-CCT--ATTCTaattt
gi|20 : aaaaaccccaaaAACA-GGG-C-C-ACAAGGTAATACCAATCCCCCGC-TTGCTATA-C-CTGAC-TTTTTAAA-AGTAAC-gtatgttttttttaaagcagttgtacgtgttaa
gi|3 : ag--AAGAGCACAT-GTCCCGCTTA--CTTCCCG--AAATGATTAAGAAAGCCTCCTA-CTAAT-GATTCTTT-CGAA-C--CGCTCTGTAT-ATT-TGATATC-ATCAGTTATCAC---CATA----ATTAT----TATTGAGCATCTGTT-CTACTG--C-A-TCCCGC-T--GTT----CTTAA---------------C---T---------TA-GTTT-G--TTTTGCGCCC-T-T-TAACTGCC-TTTT-TACA---CCACA-AACACACAAT----TCA-CCA------C-GA-TTGGGGACTTTGGCATTCTATG-TTTTGGTTTATTCTAGCCCCTA--TTCTTCGACTTGCCCA-T--GCTACAATCTGATGAAAAAAAATTCTACAAAATCA-TTGA-CCGCCGCCTTTATTAAT-TTGAAAAAAAAAAATG-ATGAATGTTAT-TATATGCT-T----T-AAAATTA-----AA-ATAAAAA-------TG--CCAGGTTCGAAACACACTCC-CAGA--CAGT-ACAACA-CAAAAATAAA-AACTA--CAC---GCTAACACTT-CGCCC--TACCGTG-----ATTCTAATAGAGTATTCG-GAGGTTTAAA-ATTTGACTTCAATAAAAGGGA-AAGTAACA---TGCCCTA-AAGTTT------------G-----TTTCTTGT-AT-ATAATGGGTC-CAGTCTC--CATTTTTTTAAAAACATGATATCAGGATATACA-GAG-G--TAACA-CTAT-CATTTAAAACCTTTCCTTTAGAATGGGAGACTTTGA-CCCAC--TCATATT-TCAA---AACTT--TCAAT-TTTAGTGG-CTATTTTACAC-CCTTAATTTTTC-ATCAAAACTGCGGTT-AT-GAGC--GTG--------------------TTAAC-ACC-CAATATA---TTAAGTCAAA-CCTCAATTAA-TTTAGATATAAGGATC-TAA--T-----GTGT-AGT-GAGATCAC-----CGA---ACTCTCA-TTCTT-ACAAT-------TACGAA-C---CGAATT-T-TTGTCA--TTT-TGAAAATTTTA-G----AT-ATCCTG-GGT-CT-CAGAGCGG-G--GGATTTTG-CCCCGCCTTG-TG-CGCCCA-GATTcga
gi|4 : aca--AAT-AAAATAATAAGAGTGTTAAAAAGGTATTTTAAACAGATTTCG-AACACACTCCTCAG-ATCAGTTACAACAGTACAAATATAACAC-A--CGCGTAAC---CACTTTCG-C---TACCGTGTATGGATT----CATAGCAT-CG-GAGGTGA-AA-TTTTGACTTC-ATAAAAGTGAATAGTAA-AAAATGCCCTATAAGTTTT-CTTTAAAAA-GTGT-TTTTTTTGT--T-ATAATGGGTCATAGTCTC--CA--TTTTTAAAAACA-GAAAT-AGGATATAC--AGA-GGTTTACATCCAGTCATTTGAAACCTTTCTTTA-G---AAGAGACTATGACCGCAC---CA-A-C-GCAAAGTA---CTGTCAAT-TTTAAAGGCCTATGTT-TACACCT--ATTTTTC-ATCAAAACTGAG--T--T-GAGCTTATGT-------------------TTAATCACC-C-AT-TA---TTAAT-CAAA-CCTCAATTAA-CTTAGATATAAGAATC-TAATTT--TTGGTGTGAGTTGAGATCAC-----CGAC-TACT-CGATTTTTTCATAA--------TA-GAA-CGCGCAGATTGT-TTGTCA--TTT-TG-AAATTTTA-A----GTGATCCTGTTGT-CT-CAGAGCTG-G--GGA-TTTGCCCCC-CGTTG-TGCCGCCCA-GATTCT
gi|5 : TAACGAAAG-A---AACC-C-AAGTT-GTAAAAATGT-GATACCAGTCAGAAATCACT-A-ATATTTATATAC-TAAATGACAAGAGTCG-GTGT-----ATGACAAATGTATGCGATGGTATA--TATATTG-ATGGTAT----TATTTGTCATTCAAGGTCCTT-CGTGATAT-G--AAGATATTAATTT-TTTA--TTC-ACTTGAATGGAGGAATTGTAGTATTTTTTGCTGACAAACATACCTAC--AAAGACACATTATCCCGCT-AAACTTCCCG--AAATGAT-A-GAA-GCTTT--AACTAATTGATTTCTTTCGAA-C--CGCTCTGTATTATTCTG----T-AT------TCTA---CA-G----GTTAT----CA-----CAT---AT-TTATTGAGC-AATTTTTCTA--ACTG---CC-AA---------------TCCGT---------TACGTTTT----TGTTTGCCCCT-TATAACTG-C-TTTT-TACA---C---A-AAAAAACACAACAATCATC-A------CTGA-TTGGG-ACT--GGTATTCT--G-TTTGGTTTTATTCTAGCCC-TGATTT-TTCGACTTGC--AGT--G-TACATCTTGATGAAAATAATTACTACAAAATCA-TTGAGCCGCCGCCTTTA--TAA-TTGAAAAAAAAAA-TT-ATGA
gi|6 : GGTATCT----TTCAA---TCTT-AGTAATATTA--AA--TAT-AATTC-TT-A--T-TGATTTAAATGGAAAAAT-GTAG-ATTTTGTA---ACAT-CAAACCT-AGAAAGTGCACAT-GTCTCGAT-A--CTCCCCG--ATATGAT-A-GAAAGCACT--A-CTAAT-GACTTCT----------------GTAT-ATTCTGATGTTTAT------TCACTCTCA-GTTTTATTATTGAGCA-----TTT---TT-CTACTG--C-AATTCCGC-GTTGCTGGAGC--AAAGTATTAAATGTTCTC---TCAAGTTATATACGTTTTG--TTTTGT-CC--T-T-TAACTAG---TTT-AACA---C---A-AA------------ACA-C-AACCATAC-GACTTCGGGA-T--GGCATTCT-TG-TTTTAGTTTTTTCTAACTG-CA--AA-TTCGACTTGC--A-T--G-TACG-TCTGGTG-AAAAAAGTTATGCAGAATTA-TTGA-ACGTCATCTTTA--TAA-TTGAAA
gi|7 : CTC--CA-TTTTTTAATA-CATGAAAT-AGGATATATACAGACG--TTACA-C
gi|7 : ggACACCT--ATTTTC--ATCAAAACTGCG--TCATG-AGCA-ATATTCAACACCCATTATTAATTTTAAAAACCATAAC-TAATTTTAAT-NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN-NNN--N--NNNNNNN-NNNNNNNNNNNN-----NNNN-NNNN-NCA-ATTTTTACAAT--------A-GAG-C---CGAATT-T-TTGGCA--CTT-TG-AAAATTTA-G----AT-ATCCTG-TGT-nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngtttacacctattttcatcaaaactgcgtcatgagcaatattcaacacccattattaattttaaaaaccataactaattttaatnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncaatttttacaatagagccgaatttttggcactttgaaaatttagatatcctgtgt
gi|8 : ggctccattttttaatacatgaaataggatatatacagacgttacacnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngttt-----CAT---TTACTACTG--C-TATGCCGC-GTTGCTGGAGC--AA---------------C---T----------ACGTTTTG--TTTT--GCC--CAT-TAATTGAT-TTTTATACAAAAC---ACAA------------TCA-T-A------C-AAATTGGGGGCT--GGCATTCT-TG-TTTTGGTTTATTCTAGCCG-TA--TT-TTCGACTTGC--A-T--G-TACGTCCAG-TG--AAAAAGTTCTACAACATTA-TTGA-CCGTCACCTTTA--TAATTTGAAAAAAA-----T-ATGACTGTTA--------------AAT-AAAAT--------T-TTAAAAA--GGTCTTG--CAGGATTCG-AACAC
gi|9 : taacataatctttagCTAAG-AAACAAGGG-CGCCACAAG-TAATACC----------------------TGGACCTTTTAAAACAGGAACCG--AC-AAACTGAACAACTTAACGAAAA-GCACTAAC-CCAAGT--GTA----TGTTGATAC-AGTCAG---TCACTTATA-AGTTGTATCC-T----GACAAGAG-CGTGTGTTTTTGATGACAAA-GTATTCGACGGT-TA--TATA--------TATGAGGTA-TTGTCATTCAA---TCTT-CGTGATA-TGAAAA--TAT-AATTT-TT-AATT-C-ATTTG-ATGGAGGAAT--TA--ATTTTCTGCTGACAA-C
Alignments
lowQualScore : 11 333333 111111 1111 111 33333333333333333333 1111 1 55555555555555 111 111111111 22222222 222222 1 2222 11 11 11 2 33333 1111 1 33333333333333333333333333 2222 11111 111 888888888888888888888888888888888888888888888 1111 111 111 11111 555555555555 111111 1 11 1 11 1 555555555555555 2222222222 1 11 22 1 2222 111 111 11111 22222 1111 11 111 1 11 22 1 888888888888 22 111 3333333333 11 1 1 22 55555555555555555555555555555555555555 1 111111 22 22222222 111111 111111 11 11111 222222222 11 222 1 11 1 1
lowQualScore : 9 5 5 5 22 11 5 00 5 5 5 5 99 6 6 444444 2 666666 6 6 6 4444 6 6 111 6 6 6 22222222222222222222 6666 0 6 3 3 66666666666666 55 2 000 5 999999999 8 8 00000000 11 000000 1 5 8 0 5555 11 88 11 11 0 8 0 55555 8 88 7777 5 8 0 99999999999999999999999999 8888 44444 000 5 77 5 111111111111111111111111111111111111111111111 888 4 4444 5 555 5 000 33333 000000000000 5 5 666666 5 7 0 99 44 6 3 3 99 6 99 6 99 6 44 1 7 0 6 6 88 6 0 0 8 444444444444444 8 4444444444 3 11 8 5 3 99 55 2 0 8 4444 444 444 8 99999 00000 7777 0 8 8 8 0 8 44 0 8 444 0 8 66 88 0 00 3 88 8 8 99 22 3 6 6 6 99 8 6 9 444444444444 2 55 3 444 3333333333 33 0 3 0 5 77 66 99999999999999999999999999999999999999 1 6 1 666666 22 44444444 9 9 0 3 6 111111 5 3 555555 11 88888 1 777777777 5 5 888 5 5 1 66 5 5 4 9999 4 777 4 5 222 66 2 11 0 5 1 66 5
lowQualScore : . . . . .. .. . .. . . . . .. . . ...... . ...... . . . .... . . ... . . . .................... .... . . . . .............. .. . ... . ......... . . ........ .. ...... . . . . .... .. .. .. .. . . . ..... . .. .... . . . .......................... .... ..... ... . .. . ............................................. ... . .... . ... . ... ..... ............ . . ...... . . . .. .. . . . .. . .. . .. . .. . . . . . .. . . . . ............... . .......... . .. . . . .. .. . . . .... ... ... . ..... ..... .... . . . . . . .. . . ... . . .. .. . .. . .. . . .. .. . . . . .. . . . ............ . .. . ... .......... .. . . . . .. .. ...................................... . . . ...... .. ........ . . . . . ...... . . ...... .. ..... . ......... . . ... . . . .. . . . .... . ... . . ... .. . .. . . . .. .
lowQualScore : 3 7 7 7 99 44 7 66 7 7 7 7 22 7 7 000000 5 888888 7 7 7 2222 7 7 777 7 7 7 77777777777777777777 5555 7 7 7 3 88888888888888 88 3 000 7 666666666 0 0 00000000 66 666666 0 0 0 2 2222 22 88 00 00 4 0 8 00000 0 88 2222 4 0 8 22222222222222222222222222 3333 33333 000 7 99 7 999999999999999999999999999999999999999999999 666 9 6666 7 333 7 000 77777 000000000000 7 7 444444 7 1 1 22 00 7 2 3 22 7 22 7 22 7 22 7 3 3 7 7 55 7 8 8 0 666666666666666 0 8888888888 6 00 0 0 2 88 55 5 0 0 6666 000 000 0 00000 00000 0000 8 0 0 0 8 0 22 8 0 000 0 0 44 66 8 66 8 88 0 0 22 22 2 7 7 7 22 0 5 0 222222222222 5 00 2 888 8888888888 22 0 2 8 4 99 33 00000000000000000000000000000000000000 3 7 7 777777 55 55555555 0 0 8 3 7 888888 7 3 333333 66 77777 7 999999999 0 0 888 0 0 0 99 0 0 4 4444 4 222 4 0 555 99 6 22 4 7 4 77 5
consensus : TAATGGACATGTACTAAGGAAACA-GGG-CGC-ACAAGGTAATACCAATCCCCCGC-TTGCTATA-C-TGGAC-TTTTAAAA-AGGAAC-G--AC-AA-CTGAA--A-TTAACGAAAG-A---TAAC-C-AAGTT-GTA----TGT-GATAC-AGTCAG---TCACT-A-A-AGTTATATCC-T----GACGAGAG-CGCGTGTTT--GACGACAAA-GTATTCGA-GGTATA--TATAT-A-ATG-TATGAGGTATTTGTCATTCAA---TCTT-CGTGATATTG--AA--TAT-AATTT-TT-A--T-C-ACTTGAATGGAGGAAT-GTAG-ATTTTNTGCTGACAA-CAGACCT-C--AAGAGCACAT-GTCCCGCT-A--CTTCCCG--AAATGATTA-GAAAGCCTC--G-CTAAT-GATTTCTT-CGAA-C--CGCTCTGTAT-ATTCTGATGTT-AT------TCAA---CA-G----ATTAT----CA-----CAT---TT-CTACTG--C-AATCCCGC-G--GCTG---C--AA---------------C---T---------TACGTTTTG--TTTTTTGCC--T-T-TAACTGGC-TTTT-TACA---C---A-AA------------TCA-C-A------C-GA-TTGGGGACT--GGCATTCT-TG-TTTTGGTTTATTCTAGCCC-TA--TT-TTCGACTTGC--A-T--G-TACGTTCTGATGAAAAAAAATTCTACAAAATCA-TTGA-CCGCCGCCTTTATTTAA-TTGAAAAAAAAAATTT-ATGAATGTTAT-T-TAT--T-T--AAT-AAAATAA-----AT-TTAAAAAAGGATTTTG--CAGGATTCG-AACACACTCCTCAGGATCAGT-ACAACA-CAAAAACATA-CAC-A--CAC---AC---CACTT-CG-CG--TACCGTG-----ATT----TATAATATTCG-GAGGTTT-AA-ATTTGACTTC-ATAAAAGGAAGAAGTAA-A---TGCCCTA-AAGTTTTTCTTTAAAAA-GTGTGTTTTTTTGT-AT-ATAATGGGTC-CAGTCTC--CA-TTTTTTAAAAACATGAAAT-AGGATATACA-AGA-G--TTACG-CTATCCATTTGAAACCTTTCCTT--G---GGGGGACTTTGACCCCACG-TCATA-T-TCAA---A---C--TCAAT-TTTAATGG-CTATTTTACACACCT--ATTTTTCAATCAAAACTGCG--T-ATGGAGC--ATGT-------------------TTAACAACC-CAAT-TA---TTAA--CAAACCCTCGATTAATTTTAGATATAAGAATC-TAA--T--TTGGTGT-AGTCGAGATCAC-----CGAC-TACT-TCA-TTTTTCACAAT-------TA-GAA-C---CGAATT-T-TTGNCA--TTT-TG-AAATTTTA-G----AT-ATCCTG-CGT-CT-CAGAGC---G--GGATTTTGCCCCCGCCTTG-TG-CGCCCA-NATTCTTTACCGAAAGTTT
Reference ( family-1445 ) : TAATGGACATGTACTAAGGAAACA-GGG-CGC-ACAAGGTAATACCAATCCCCCGC-TTGCTATA-C-TGGAC-TTTTAAAA-AGGAAC-G--AC-AA-CTGAA--A-TTAACGAAAG-A---TAAC-C-AAGTT-GTA----TGT-GATAC-AGTCAG---TCACT-A-A-AGTTATATCC-T----GACGAGAG-CGCGTGTTT--GACGACAAA-GTATTCGA-GGTATA--TATAT-A-ATG-TATGAGGTATTTGTCATTCAA---TCTT-CGTGATATTG--AA--TAT-AATTT-TT-A--T-C-ACTTGAATGGAGGAAT-GTAG-ATTTTNTGCTGACAA-CAGACCT-C--AAGAGCACAT-GTCCCGCT-A--CTTCCCG--AAATGATTA-GAAAGCCTC--G-CTAAT-GATTTCTT-CGAA-C--CGCTCTGTAT-ATTCTGATGTT-AT------TCAA---CA-G----ATTAT----CA-----CAT---TT-CTACTG--C-AATCCCGC-G--GCTG---C--AA---------------C---T---------TACGTTTTG--TTTTTTGCC--T-T-TAACTGGC-TTTT-TACA---C---A-AA------------TCA-C-A------C-GA-TTGGGGACT--GGCATTCT-TG-TTTTGGTTTATTCTAGCCC-TA--TT-TTCGACTTGC--A-T--G-TACGTTCTGATGAAAAAAAATTCTACAAAATCA-TTGA-CCGCCGCCTTTATTTAA-TTGAAAAAAAAAATTT-ATGAATGTTAT-T-TAT--T-T--AAT-AAAATAA-----AT-TTAAAAAAGGATTTTG--CAGGATTCG-AACACACTCCTCAGGATCAGT-ACAACA-CAAAAACATA-CAC-A--CAC---AC---CACTT-CG-CG--TACCGTG-----ATT----TATAATATTCG-GAGGTTT-AA-ATTTGACTTC-ATAAAAGGAAGAAGTAA-A---TGCCCTA-AAGTTTTTCTTTAAAAA-GTGTGTTTTTTTGT-AT-ATAATGGGTC-CAGTCTC--CA-TTTTTTAAAAACATGAAAT-AGGATATACA-AGA-G--TTACG-CTATCCATTTGAAACCTTTCCTT--G---GGGGGACTTTGACCCCACG-TCATA-T-TCAA---A---C--TCAAT-TTTAATGG-CTATTTTACACACCT--ATTTTTCAATCAAAACTGCG--T-ATGGAGC--ATGT-------------------TTAACAACC-CAAT-TA---TTAA--CAAACCCTCGATTAATTTTAGATATAAGAATC-TAA--T--TTGGTGT-AGTCGAGATCAC-----CGAC-TACT-TCA-TTTTTCACAAT-------TA-GAA-C---CGAATT-T-TTGNCA--TTT-TG-AAATTTTA-G----AT-ATCCTG-CGT-CT-CAGAGC---G--GGATTTTGCCCCCGCCTTG-TG-CGCCCA-NATTCTTTACCGAAAGTTT
gi|1 : TAATGGACATGTACTAAGGAAATA-GGGGCGC-ACAAGGCAATACCA-TCCCTCGC-TTGCTATA-C-TGGAC-TTTTAAAA-AGGAAC-G--AC-AA-CTGAA--A-TTAACGAAAGCA---TAAC-C-AAGTT-GTA----T-T-GA-AC-AGTCAG---TCACT-A-A-AGTTATATCCCT----GACGAGAG-CG-GTGTT---GATGACAAA-GTATTAGA-GGTATACGTATAT-ACATG-TATGAGGTATTTGTCATTCAA---TCTT-CGTGATACTG--A---TAT-AATTTATT-A--T-C-ACTTGA-TGGAGGAAT-G-AG-ATTTTATTGTGACAA-CAGACCT-C--AAGAGCACAT-GTCCCGCT-A--CTTCC-G--AAATGAT-A-GAAAGCCT---G-CTAAT-GATTTCTT-CGAATC--CGCTC-GTAT-ATTCTGATG---AT------TCAA---CA------ATTAT----CA-----CAT---TT-CTACTG--C-AATCCCGT-G--GCT----T--AA---------------C---T---------TACGTTTTG--TTTTTTGCC--T-T-TAACTGGC-TTTT-TACA---C---A-AA------------TCA-C-A------C-GA-TTGGGG-CT--GGCATTCT--G-TTT-GGTTTATTCTAGCCC-TA--TT-TCGGACTTGC--A-T--G-TACATTCTGATGAAAAAAAATTCGACAAATGCA-TTGA-CCGCCGCCTTTATTTAA-TTGAAAAAAAAAATTTAATGAATGTTAT-T-TATTGT-T--AAT-AAAATAA-----AT-TTAAGAAAGGATTTTG--CAGGATTCG-AACA-ACTCCTCAGGATCAG--ACAACA-CAAAAACATA-CAC-C--AAC---AC---CACTT-CG-CG--TACCGTG-----ATT----TATAATATTCG-GAGGTTT-AATATTTGACTTC-ATAAAAGGAAGAAGT-A-A---TG-CCTA-AAGTTTTTCTTTAAAAACGTGTGTTTTTTTGTAAT-ATAAT--GTC-CAGTCTC--CA--TTTTTAAAAACATGAAAT-AGGATATACA-AGA-G--TTACG-CTATCCATTT-AAACCTTTC------------GGACTTTGACCCCACG-TCATA-T-TCAA---A---C--TCAA--TTTAATGG-CTATTTTAC---CCT--ATTTTTCAATCAAAACTGCG--T-ATGGAGCT-ATGT-------------------CTAAC-ACC-CGAT-TA---TTAA--CAAATTCTCAATTAATTTTAGA-ATAAG-ATC-TAA--TTCTTGG-GT-AGTTTAGATCAT-----CGAC-TACT-TCA-TTTTTCATAAT-------TA-GAA-C---CGAATT-T-TTGTCAG-TTT-TG-AAATTTTATA----AT-ATCCTG-TGT-CT-CAGAGC---G--GGATTCTGCCCCCGCCTTGTTG-CG-CCA-TATTCTTT
gi|10 : T--ATTGTT-AATTCAACCTGCC--C--TGACGC--ATGT-------------------T-AACAACC-CAAT--A---TAAT--CAAACC---G--TAATTT-AAATATAAGAATCCTAA--T--TTGGTGT-AACCGAGATCA------CAACGTATT-----TTTTGCACAA--------TA-GAA-C---CGAATT-T-TTGGCA--TTTAAG-AAAATT---G----AT-ATCT---CGT-CT-CATAGA---G--GTATTTT--CTCTGCCTTG-TG-CGCCCA-TATTCcaagaaattt
gi|11 : ctcaaatcttttaaattcaatggtatgtaaccgaaagaattttctgaaT--ATTGTT-AATTCAACCTGCC--C--TGACGC--ATGT-------------------T-AACAACC-CAAT--A---TAAT--CAAACC---G--TAATTT-AAATATAAGAATC-TAA--T--TTGGTGT-AACCGAGATCAC-----CAAC-TATT-T-A-TTTTGCACAAT--------A-GAA-C---CGAATT-T-TTGGCA--TTT-AG-AAAATTTA-G----AT-ATCCTT-CGT-CT-CAGAGA---G--GTATTTT--CTCTGCCTTG-TG-CGCCCA-aa
gi|12 : ctcaaatcttttaaattcaatggtatgtaaccgaaagaattttctgaaA-CAC-AATCAC---AC---GACTT-GG-GGACTACCGTG-----ATT----TATAATATTCAAGAGGTTT-AA-ATTCGACTCC-ATAAAAGGAA--AGTAA-A---TGCC-TC-AAGTTTTTCTTTAAAAA-GTGTGTTTT-TTGT-AT-AGAATGGGGC-CAGTCTC--CA-TTTTTTTTAAACAGGAAAT-AGGATATACA-GAG-G--TTA
gi|13 : AAGAAAACA-GGG-CGC-ACAAGGTAATACCAATCACCCGC-CTACTAC--C-TGGAC-TTTTAAAA-AGGAAC-G--AC-AA-CTGAA-----TAAC-------------C-C-AAGTT-GTA----TGT-AATAC-AGTCAG---TCACT-A-A-AGTTATA--------------------CGTGTCT--GACGACAAA-GTATTTGA-GGTATA--TGT--------------GGTACTTGTCATTCAA---TCTT-
gi|14 : AAGAAACA-GGG-CGC-ACAAGGTAATACCAATCACCCGC-CTACTATC-C-TGGAC-TTTTAAAA-AGGAAC-G--AC--A-CTGA----------------A---TAAC-C-AAGTTGGTA----TGT-AATAC-AGTCAG---TCACT-A-A-AG-TATAT------------------ACGTGTCT--GACGAC-AA-GTATTTGA-GGTAT---------------TATGTGGTACTTGTCATTCAA---TCTT-
gi|15 : A---CA-T----ATTATTGAGCA-----TTT---TT-CTACTG--C-CATCCCGC-G--
gi|15 : tc--AA---------------C---T---------TATGTTTTT--GTTTTGGCC--T-T-TTACTG-C-TTTT-TACA---C-----AA------------TCA-C-A------C-GACTTGGGGACattctggagcaaagtatgtaaacatttgatcaaaacttatgtttttgttttggccttttactgctttttacacaatcacacgacttggggac
gi|16 : tcacatattattgagcatttttctactgccatcccgcgattctggagcaaagtatgtaaacatttgatcaaGTGT-AGTCATGATCACGATACCGA--TACT--CA-TTATTTACAACAATACAGTA-GAA-C---CGCATT-T-TTGGCATTTTT-TA-AAATTGTA-GAATAAT-ATCCT--CGTGTT-CAGAGCGAAG--GGA-TTTGCCC
gi|17 : aCAAA-------TA-GAAAC---CGAACT-TGTTGTCAA-TTT-TG-AAATTTTA-G----AT-ATCCTG-TGT-CTCCAGAGC---G--GGGATTTGCCCCGACCTTG-TGCCGCCCAGAATTCTTT-TCGAAAGTTT
gi|18 : AAAGAAACA-GGG-CGC-ACAAGGTAATGCCCAT-CCCCGCTTTGCTATACC-TGGAC-TTTTAAAA---GGAC-GAAACAAA-CTGA
gi|19 : aaaaatctgaaaaaagaacgaatatggTTTTA-G----AT-ATCCTG-TGT-CT-CAGAGC---GACAGA-TTTG-CCCTGACTTG-TG-CACCCA-TATTCTTTA
gi|2 : ttTAATGGACATGTACTAAG-AAATA-GGG-CGC-ACAAGGCAATACCAATCCCTCGC-TTGCTATA-CCTGGAC-TTTTAAAA-AGGAAC-G--AC-AA-CTGAA--AATTAACGAAAG-A---TAACTC-AAGTT-GTA----TGT-GATAC-AGTCAG---TCACT-A-A-AGTTATATCC-T----GACGAGAG-CGTGTGTTT--GATGACAAA-GTATTAGA-GGTATACGTATAT-ACATG-TATGAGGTATTTGTCATTCAA---TCTTCCGTGATATGA--AA--TAT-AATTT-AT----T-C-ACTTGAATGGAGGAAT-G-GG-ATTTTATG-TGACAA-CAGACTA-CA-AAGAGCACAT--TCCCGC--A--CTTCCCGAAAAATGATTA-GAAAGCCT---G-CTAAT-GATTTCTT-CGAA-TCACGCTC-GTAT-ATTCTGATG---AT------TCAA---C-------ATTAT----CA-----CAT---TT-CTACTG--CAAATCCCGT----GCT----T--AA---------------C---T---------TACGTTTTGGTTTTTTTGCC--C-T-TAACTGGCTTTTT-TACA---C---A-AA------------TCA-C-A------C-GA-TTGGGGACT--GGCATTCT-TGTTTTTGGTTTATTCTAGCCCTTA--TT-TTCGACTTGC--A-TAGG-TACATTCTGAT-AAAAAAAATTCGAC-AAATCATTTGA-CCGCCGCCTTTATTTAA-TTGAAAAAAAAAATTT-ATGAATGTTATAT-TAT--TGTTAAATAAAAATAA-----AT-TTAAGAAAGGATTTTG--CAGGATTCG-AACAAACTCCTCAGGATCAG--ACAA-A-CAAAAACATA-CAC----CAA---AC---CACTT-CG-CG--TACCGTG-----ATT----TATAATATTCG-GAGGTTT-AA-ATTTG-CTTC-ATAAAAGGAAGAAGTAA-A---TG-CCTA-AAGTTTTTCTTTAAAAC-GTGTG-TTTTTTGT-ATAATAATGGGTC-CAGTCTCAACA--TTTTTAAAAACATGAAAT-AGGATATACA-AGA-G--TTACG-CTATCCATTT-AAACCTTTC------------GGACTTTGACCCCACGTTCATA-TGTCAA---A---C--TCAATGTTTAATGG-CTATTTTACAC-CCT--ATTCTaattt
gi|20 : aaaaaccccaaaAACA-GGG-C-C-ACAAGGTAATACCAATCCCCCGC-TTGCTATA-C-CTGAC-TTTTTAAA-AGTAAC-gtatgttttttttaaagcagttgtacgtgttaa
gi|3 : ag--AAGAGCACAT-GTCCCGCTTA--CTTCCCG--AAATGATTAAGAAAGCCTCCTA-CTAAT-GATTCTTT-CGAA-C--CGCTCTGTAT-ATT-TGATATC-ATCAGTTATCAC---CATA----ATTAT----TATTGAGCATCTGTT-CTACTG--C-A-TCCCGC-T--GTT----CTTAA---------------C---T---------TA-GTTT-G--TTTTGCGCCC-T-T-TAACTGCC-TTTT-TACA---CCACA-AACACACAAT----TCA-CCA------C-GA-TTGGGGACTTTGGCATTCTATG-TTTTGGTTTATTCTAGCCCCTA--TTCTTCGACTTGCCCA-T--GCTACAATCTGATGAAAAAAAATTCTACAAAATCA-TTGA-CCGCCGCCTTTATTAAT-TTGAAAAAAAAAAATG-ATGAATGTTAT-TATATGCT-T----T-AAAATTA-----AA-ATAAAAA-------TG--CCAGGTTCGAAACACACTCC-CAGA--CAGT-ACAACA-CAAAAATAAA-AACTA--CAC---GCTAACACTT-CGCCC--TACCGTG-----ATTCTAATAGAGTATTCG-GAGGTTTAAA-ATTTGACTTCAATAAAAGGGA-AAGTAACA---TGCCCTA-AAGTTT------------G-----TTTCTTGT-AT-ATAATGGGTC-CAGTCTC--CATTTTTTTAAAAACATGATATCAGGATATACA-GAG-G--TAACA-CTAT-CATTTAAAACCTTTCCTTTAGAATGGGAGACTTTGA-CCCAC--TCATATT-TCAA---AACTT--TCAAT-TTTAGTGG-CTATTTTACAC-CCTTAATTTTTC-ATCAAAACTGCGGTT-AT-GAGC--GTG--------------------TTAAC-ACC-CAATATA---TTAAGTCAAA-CCTCAATTAA-TTTAGATATAAGGATC-TAA--T-----GTGT-AGT-GAGATCAC-----CGA---ACTCTCA-TTCTT-ACAAT-------TACGAA-C---CGAATT-T-TTGTCA--TTT-TGAAAATTTTA-G----AT-ATCCTG-GGT-CT-CAGAGCGG-G--GGATTTTG-CCCCGCCTTG-TG-CGCCCA-GATTcga
gi|4 : aca--AAT-AAAATAATAAGAGTGTTAAAAAGGTATTTTAAACAGATTTCG-AACACACTCCTCAG-ATCAGTTACAACAGTACAAATATAACAC-A--CGCGTAAC---CACTTTCG-C---TACCGTGTATGGATT----CATAGCAT-CG-GAGGTGA-AA-TTTTGACTTC-ATAAAAGTGAATAGTAA-AAAATGCCCTATAAGTTTT-CTTTAAAAA-GTGT-TTTTTTTGT--T-ATAATGGGTCATAGTCTC--CA--TTTTTAAAAACA-GAAAT-AGGATATAC--AGA-GGTTTACATCCAGTCATTTGAAACCTTTCTTTA-G---AAGAGACTATGACCGCAC---CA-A-C-GCAAAGTA---CTGTCAAT-TTTAAAGGCCTATGTT-TACACCT--ATTTTTC-ATCAAAACTGAG--T--T-GAGCTTATGT-------------------TTAATCACC-C-AT-TA---TTAAT-CAAA-CCTCAATTAA-CTTAGATATAAGAATC-TAATTT--TTGGTGTGAGTTGAGATCAC-----CGAC-TACT-CGATTTTTTCATAA--------TA-GAA-CGCGCAGATTGT-TTGTCA--TTT-TG-AAATTTTA-A----GTGATCCTGTTGT-CT-CAGAGCTG-G--GGA-TTTGCCCCC-CGTTG-TGCCGCCCA-GATTCT
gi|5 : TAACGAAAG-A---AACC-C-AAGTT-GTAAAAATGT-GATACCAGTCAGAAATCACT-A-ATATTTATATAC-TAAATGACAAGAGTCG-GTGT-----ATGACAAATGTATGCGATGGTATA--TATATTG-ATGGTAT----TATTTGTCATTCAAGGTCCTT-CGTGATAT-G--AAGATATTAATTT-TTTA--TTC-ACTTGAATGGAGGAATTGTAGTATTTTTTGCTGACAAACATACCTAC--AAAGACACATTATCCCGCT-AAACTTCCCG--AAATGAT-A-GAA-GCTTT--AACTAATTGATTTCTTTCGAA-C--CGCTCTGTATTATTCTG----T-AT------TCTA---CA-G----GTTAT----CA-----CAT---AT-TTATTGAGC-AATTTTTCTA--ACTG---CC-AA---------------TCCGT---------TACGTTTT----TGTTTGCCCCT-TATAACTG-C-TTTT-TACA---C---A-AAAAAACACAACAATCATC-A------CTGA-TTGGG-ACT--GGTATTCT--G-TTTGGTTTTATTCTAGCCC-TGATTT-TTCGACTTGC--AGT--G-TACATCTTGATGAAAATAATTACTACAAAATCA-TTGAGCCGCCGCCTTTA--TAA-TTGAAAAAAAAAA-TT-ATGA
gi|6 : GGTATCT----TTCAA---TCTT-AGTAATATTA--AA--TAT-AATTC-TT-A--T-TGATTTAAATGGAAAAAT-GTAG-ATTTTGTA---ACAT-CAAACCT-AGAAAGTGCACAT-GTCTCGAT-A--CTCCCCG--ATATGAT-A-GAAAGCACT--A-CTAAT-GACTTCT----------------GTAT-ATTCTGATGTTTAT------TCACTCTCA-GTTTTATTATTGAGCA-----TTT---TT-CTACTG--C-AATTCCGC-GTTGCTGGAGC--AAAGTATTAAATGTTCTC---TCAAGTTATATACGTTTTG--TTTTGT-CC--T-T-TAACTAG---TTT-AACA---C---A-AA------------ACA-C-AACCATAC-GACTTCGGGA-T--GGCATTCT-TG-TTTTAGTTTTTTCTAACTG-CA--AA-TTCGACTTGC--A-T--G-TACG-TCTGGTG-AAAAAAGTTATGCAGAATTA-TTGA-ACGTCATCTTTA--TAA-TTGAAA
gi|7 : CTC--CA-TTTTTTAATA-CATGAAAT-AGGATATATACAGACG--TTACA-C
gi|7 : ggACACCT--ATTTTC--ATCAAAACTGCG--TCATG-AGCA-ATATTCAACACCCATTATTAATTTTAAAAACCATAAC-TAATTTTAAT-NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN-NNN--N--NNNNNNN-NNNNNNNNNNNN-----NNNN-NNNN-NCA-ATTTTTACAAT--------A-GAG-C---CGAATT-T-TTGGCA--CTT-TG-AAAATTTA-G----AT-ATCCTG-TGT-nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngtttacacctattttcatcaaaactgcgtcatgagcaatattcaacacccattattaattttaaaaaccataactaattttaatnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncaatttttacaatagagccgaatttttggcactttgaaaatttagatatcctgtgt
gi|8 : ggctccattttttaatacatgaaataggatatatacagacgttacacnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngttt-----CAT---TTACTACTG--C-TATGCCGC-GTTGCTGGAGC--AA---------------C---T----------ACGTTTTG--TTTT--GCC--CAT-TAATTGAT-TTTTATACAAAAC---ACAA------------TCA-T-A------C-AAATTGGGGGCT--GGCATTCT-TG-TTTTGGTTTATTCTAGCCG-TA--TT-TTCGACTTGC--A-T--G-TACGTCCAG-TG--AAAAAGTTCTACAACATTA-TTGA-CCGTCACCTTTA--TAATTTGAAAAAAA-----T-ATGACTGTTA--------------AAT-AAAAT--------T-TTAAAAA--GGTCTTG--CAGGATTCG-AACAC
gi|9 : taacataatctttagCTAAG-AAACAAGGG-CGCCACAAG-TAATACC----------------------TGGACCTTTTAAAACAGGAACCG--AC-AAACTGAACAACTTAACGAAAA-GCACTAAC-CCAAGT--GTA----TGTTGATAC-AGTCAG---TCACTTATA-AGTTGTATCC-T----GACAAGAG-CGTGTGTTTTTGATGACAAA-GTATTCGACGGT-TA--TATA--------TATGAGGTA-TTGTCATTCAA---TCTT-CGTGATA-TGAAAA--TAT-AATTT-TT-AATT-C-ATTTG-ATGGAGGAAT--TA--ATTTTCTGCTGACAA-C
blockSeqs : A A . C AA CA T AC C C C C AA A A ACAACT G AGCAC T C G AAAA T C AAA T T T ACTAAATGACAAGAGTCG TTTT T T T CGTATATACATG GT C GGT C TGAAGA T . TATTC AA TGTAGT A C A AGA TA TT AA AA T A CCTA T TT TCA T T TTTATTCACTCTCAGTTTT TGAG TTGAG CTG A AG A GTTGCTGGAGCAAAGTATTAAATGTTCTCTCAAGTTATA GGT T CCT A GCT A AAA CACA AAAACACAACAA T C ACCATA T C TT AT T T T AT C CC G AG C AT A A T G TT T T . TATTATTGTTAA A AATAAGAGTG A AA A A T GA TT C G A AAT GTA TAA T GGAC TATGG CTAA A A . A GA C AAA C T TT A GT T A A A AA TT G C C C GT T C A CTTTAGAATGGG C GT T TG AGTACTG TG C A A TA A TCATGAGCAATATTCAACACCCATTATTAATTTT A A A TAATT GT NNNNNNNN T T A C TTTT G C CGATAC CG CTCA C CAATACAGT C A GCG G G G TT A A . AATA G GTT G C GAA AC T GC . C GA A
blockSeqs : G . . . AA CA . C . . . . . . . AAAT G GA . . . . . . . . . . CCTGACGAGAGCGT CT . T C TATATTGATGG GA C . . TGAAAA . . AATTC AA GTAG T C . CA G T . . T . TAA . T C T . TCATCAGTTATCACCATA TGAG . . . . . TAACTGCCAATCCGT T T CT . CC . . AC CACACAAT . . . . C . T . T C . . . . . . AA A A . . TT . A . TTATATGCTT . AAAT G . . C T A T C . . TA . . . CCC . . . . . . AT . . C . TT C G C A . . . T T . . . . . T G TTTAGAAG C . T TT AACTT T . A A . A GTTATGAGCGTGTT A . A ATA T CCTCAAT T T A . TT . C C C CGAT C AT . . . . . G A . . . . . TC . . GG . T GC . C T
blockSeqs : G . . . CA CC . A . . . . . . . A G GA . . . . . . . . . . CCTGACAAGAGCGT CT . A . TATA GA T . . TGAAA . . ATTG AA GGG G . . AC G T . . . . TA . T C . . TATTCTACAG . . . . . . GTTGCTGGAGCAACT G G CA . AT . . A . . . . . A . T . G . . . . . . . AT A A . . . . . . A . TAAA . . . C . A . . . . A . . . CG . . . . . . A . . C . T A T T A . . . T T . . . . . . . . . . . C AC T . . . . C TTGAGCTTATGTTT C . A TA T CCTCAAT N N G . TT . C C C NCA T TT . . . . . G . . . . . . GT . . TG . A GC . . T
blockSeqs : . . . . AA CC . A . . . . . . . . . A . . . . . . . . . . AC TT . C . TGT . T . . TTAAA . . TC A TA C . . . . . . . . G . . . . . ATTCAAC . . . . . . TGTTCTTAACT G T T . C . . A . . . . . . . T . T . . . . . . . GT G . . . . . . . . T . . . C . . . . . C . . . . . . . . . . . . . . . . . . . . T . . . . . . . C CTGACGCATGTT A . A A . CCG . . A . NN . T C N TA C T . . . . . T . . . . . . GT . . . . T G . . G
blockSeqs : . . . . AA C . . . . . . . . . . . . . . . . . . . . . C . . C . . . T . . . . . . . . GCTTAACT G G C . C . . A . . . . . . . . . T . . . . . . . G . . . . . . . . . . . . . . . CTGACGCATGTT . . . A . CCG . . N . T . N N . CA T T . . . . . T . . . . . . GG . . . . . G . . G
blockSeqs : . . . . . . . . . . . . . . . . . . . . . T . G . . . . . . . . . . . . . . . . T . . . . . T . . . . . . GT . . . . . . . .
blockSeqs : T . . . . . G . . . . . . C . . . . . .
blockSeqs : . . . C .
blockSeqCons : AA A***** GA**** CT** TGAAGA*** TTC***** AA GTAG** TA*** C*** TCCATTCNACA*************** GTTGCTGCAACT********************************* C** T* ** C**** A* ** A* N* TTGACGCCCATGTT************************ TA**** T* CCTCAAG* TT**** CA*** T******** **
originalCons : TAATGGACATGTACTAAGGAAACA-GGG-CGC-ACAAGGTAATACCAATCCCCCGC-TTGCTATA-C-TGGAC-TTTTAAAA-AGGAAC-G--AC-AA-CTGAA--A-TTAACGAAAG-A---TAAC-C-AAGTT-GTA----TGT-GATAC-AGTCAG---TCACT-A-A-AGTTATATCC-T----GACGAGAG-CGCGTGTTT--GACGACAAA-GTATTCGA-GGTATA--TATAT-A-ATG-TATGAGGTATTTGTCATTCAA---TCTT-CGTGATATTG--AA--TAT-AATTT-TT-A--T-C-ACTTGAATGGAGGAAT-GTAG-ATTTTNTGCTGACAA-CAGACCT-C--AAGAGCACAT-GTCCCGCT-A--CTTCCCG--AAATGATTA-GAAAGCCTC--G-CTAAT-GATTTCTT-CGAA-C--CGCTCTGTAT-ATTCTGATGTT-AT------TCAA---CA-G----ATTAT----CA-----CAT---TT-CTACTG--C-AATCCCGC-G--GCTG---C--AA---------------C---T---------TACGTTTTG--TTTTTTGCC--T-T-TAACTGGC-TTTT-TACA---C---A-AA------------TCA-C-A------C-GA-TTGGGGACT--GGCATTCT-TG-TTTTGGTTTATTCTAGCCC-TA--TT-TTCGACTTGC--A-T--G-TACGTTCTGATGAAAAAAAATTCTACAAAATCA-TTGA-CCGCCGCCTTTATTTAA-TTGAAAAAAAAAATTT-ATGAATGTTAT-T-TAT--T-T--AAT-AAAATAA-----AT-TTAAAAAAGGATTTTG--CAGGATTCG-AACACACTCCTCAGGATCAGT-ACAACA-CAAAAACATA-CAC-A--CAC---AC---CACTT-CG-CG--TACCGTG-----ATT----TATAATATTCG-GAGGTTT-AA-ATTTGACTTC-ATAAAAGGAAGAAGTAA-A---TGCCCTA-AAGTTTTTCTTTAAAAA-GTGTGTTTTTTTGT-AT-ATAATGGGTC-CAGTCTC--CA-TTTTTTAAAAACATGAAAT-AGGATATACA-AGA-G--TTACG-CTATCCATTTGAAACCTTTCCTT--G---GGGGGACTTTGACCCCACG-TCATA-T-TCAA---A---C--TCAAT-TTTAATGG-CTATTTTACACACCT--ATTTTTCAATCAAAACTGCG--T-ATGGAGC--ATGT-------------------TTAACAACC-CAAT-TA---TTAA--CAAACCCTCGATTAATTTTAGATATAAGAATC-TAA--T--TTGGTGT-AGTCGAGATCAC-----CGAC-TACT-TCA-TTTTTCACAAT-------TA-GAA-C---CGAATT-T-TTGNCA--TTT-TG-AAATTTTA-G----AT-ATCCTG-CGT-CT-CAGAGC---G--GGATTTTGCCCCCGCCTTG-TG-CGCCCA-NATTCTTTACCGAAAGTTT
finalCons : TAATGGACATGTACTAAGGAAACA-GGG-CGC-ACAAGGTAATACCAATCCCCCGC-TTGCTATA-C-TGGAC-TTTTAAAA-AGGAAC-G--AC-AA-CTGAA-----TAACGAAAGA----TAAC-C-AAGTT-GTA----TGT-GATAC-AGTCAG---TCACT-A-A-AGTTATATCC-T----GACGAGAG-CGCGTGTCT--GACGACAAA-GTATTCGA-GGTATA--TATAT-A-ATG-TATGAGGTATTTGTCATTCAA---TCTT-CGTGATATGAAGA---TAT-AATTT-TTTTC-----ACTTGAATGGAGGAATGTAG--ATTTTNTGCTGACAA-CAGACCT-C--AAGAGCACAT-GTCCCGCT-A--CTTCCCG--AAATGATTA-GAAAGCCTTA---CTAAT-GATTTCTT-CGAAC---CGCTCTGTAT-ATTCTGATGTCCATTCNACA---------------ATTAT----CA-----CAT---TT-CTACTG--C-AATCCCGCGTTGCTGCAACT---------------------------------TACGTTTTG--TTTTTTGCC--T-T-TAACTGC--TTTT-TACA---C---A-AA------------TCA-C-A------C-GA-TTGGGGACT--GGCATTCTT-G-TTTTGGTTTATTCTAGCCC-TA--TT-TTCGACTTGC--A-T--G-TACGTTCTGATGAAAAAAAATTCTACAAAATCA-TTGA-CCGCCGCCTTTA--TAA-TTGAAAAAAAAAATTT-ATGAATGTTAT-T-TAT--T-T--AAT-AAAATAA-----AT-TTAAAAAAGGATTTTG--CAGGATTCG-AACACACTCCTCAGGATCAGT-ACAACA-CAAAAACATA-CAC-A--CAC---AC---CACTT-CGC----TACCGTG-----ATT----TATAATATTCG-GAGGTTT-AA-ATTTGACTTC-ATAAAAGGAAGAAGTAA-A---TGCCCTA-AAGTTTTTCTTTAAAAA-GTGT--TTTTTTGTA-T-ATAATGGGTC-CAGTCTC--CA-TTTTTTAAAAACATGAAAT-AGGATATACA-AGA-G--TTACG-CTATCCATTTGAAACCTTTCCTT--G---GGGGGACTTTGACCCCACG-TCATA-T-TCAA---A---C--TCAAT-TTTAATGG-CTATTTTACACACCT--ATTTTTN-ATCAAAACTGCGTTGACGCCCATGTT------------------------AACAACC-CAATTA----TTAAT-CAAACCTCAAG-TAATTTTAGATATAAGAATC-TAATT----TGGTGT-AGTCGAGATCAC-----CGAC-TACTCA---TTTTTCACAAT--------A-GAA-C---CGAATT-T-TTGNCA--TTT-TG-AAATTTTA-G----AT-ATCCTG-CGT-CT-CAGAGC---G--GGATTTTGCCCCCGCCTTG-TG-CGCCCA-NATTCTTTACCGAAAGTTT
Alignments
lowQualScore : 11 333333 111111 1111 111 33333333333333333333 1111 1 555555555555555 111 1 22222 222222 1 2222 11 11 11 2 222222 1111 1 5555555555555555555555555555 2222 11111 111 7777777777777777777777777777777777777 1111 2222 111 666666666666 111111 1 11 1 22 1 1 555555555555555 2222222222 1 11 22 1 2222 111 111 33333 22222 1111 11 111 2 2222222222 22 1 888888888888 22 111 3333333333 11 1 1 11 55555555555555555555555555 1 111111 11111 111111 11111111 111111 22222222 11 222 1 11 1 1
lowQualScore : 9 5 5 5 22 11 5 00 5 5 5 5 99 6 6 888888 2 666666 6 6 6 4444 6 6 111 6 6 6 22222222222222222222 6666 0 6 3 3 222222222222222 55 000 5 0 3 8 0 99999 11 000000 1 5 8 0 5555 11 88 11 11 0 8 0 000000 8 88 7777 5 8 0 2222222222222222222222222222 8888 44444 000 5 77 5 99999 5555555555555555555555555555555555555 888 4 4444 5 5 2222 000 666666666666 5 5 666666 5 7 0 99 44 6 3 3 99 6 99 6 99 6 44 1 7 0 6 6 55 3 0 0 8 444444444444444 8 4444444444 3 11 8 5 3 99 55 2 0 8 4444 444 444 8 11111 00000 7777 0 8 8 8 0 8 44 0 8 444 0 8 66 0000000000 88 8 8 99 22 3 6 6 6 99 8 6 9 444444444444 2 55 3 444 3333333333 33 0 3 0 5 77 888 55 66666666666666666666666666 6 1 6 1 666666 7 6 6 44444 9 9 0 3 6 111111 5 3 44444444 5 5 111111 1 88888888 5 5 888 5 5 1 66 5 5 4 9999 4 777 4 5 222 66 2 11 0 5 1 66 5
lowQualScore : . . . . .. .. . .. . . . . .. . . ...... . ...... . . . .... . . ... . . . .................... .... . . . . ............... .. ... . . . . . ..... .. ...... . . . . .... .. .. .. .. . . . ...... . .. .... . . . ............................ .... ..... ... . .. . ..... ..................................... ... . .... . . .... ... ............ . . ...... . . . .. .. . . . .. . .. . .. . .. . . . . . .. . . . . ............... . .......... . .. . . . .. .. . . . .... ... ... . ..... ..... .... . . . . . . .. . . ... . . .. .......... .. . . .. .. . . . . .. . . . ............ . .. . ... .......... .. . . . . .. ... .. .......................... . . . . ...... . . . ..... . . . . . ...... . . ........ . . ...... . ........ . . ... . . . .. . . . .... . ... . . ... .. . .. . . . .. .
lowQualScore : 3 7 7 7 99 44 7 66 7 7 7 7 22 7 7 333333 5 888888 7 7 7 2222 7 7 777 7 7 7 77777777777777777777 2222 7 7 7 3 000000000000000 88 000 7 8 2 0 8 00000 66 666666 0 0 0 2 2222 22 88 00 00 4 0 8 666666 0 88 2222 4 0 8 0000000000000000000000000000 3333 33333 000 7 99 7 99999 9999999999999999999999999999999999999 666 9 6666 7 7 3333 000 444444444444 7 7 444444 7 1 1 22 00 7 2 3 22 7 22 7 22 7 22 7 3 3 7 7 00 3 8 8 0 666666666666666 0 8888888888 6 00 0 0 2 88 55 5 0 0 6666 000 000 0 00000 00000 0000 8 0 0 0 8 0 22 8 0 000 0 0 44 2222222222 88 0 0 22 22 2 7 7 7 22 0 5 0 222222222222 5 00 2 888 8888888888 22 0 2 8 4 99 111 88 22222222222222222222222222 7 3 7 7 777777 3 7 7 88888 0 0 8 3 7 888888 7 3 99999999 7 7 777777 7 11111111 0 0 888 0 0 0 99 0 0 4 4444 4 222 4 0 555 99 6 22 4 7 4 77 5
consensus : TAATGGACATGTACTAAGGAAACA-GGG-CGC-ACAAGGTAATACCAATCCCCCGC-TTGCTATA-C-TGGAC-TTTTAAAA-AGGAAC-G--AC-AA-CTGAA-----TAACGAAAG-A---TAAC-C-AAGTT-GTA----TGT-GATAC-AGTCAG---TCACT-A-A-AGTTATATCC-T----GACGAGAG-CGCGTGTCT--GACGACAAA-GTATTCGA-GGTATA--TATAT-A-ATG-TATGAGGTATTTGTCATTCAA---TCTT-CGTGATATGAAGATAT-AATTTTTA-TA-TCACTTGAATGGAGGAAT-GTAG-ATTTTNTGCTGACAA-CAGACCT-C--AAGAGCACAT-GTCCCGCT-A--CTTCCCG--AAATGATTA-GAAAGCCT--TA-CTAAT-GATTTCTT-CGAA-C--CGCTCTGTAT-ATTCTGATGT---TA-TT----CAA---CA-----A-TTAT----CA-----CAT---TT-CTACTG--C-AATCCCGC-GTTGCTG---C-AA---------------C---T---------TACGTTTTG--TTTTTTGCC--T-T-TAACT-G--C-TTTTTACAC---AAA-----A------TCA-C-A------C-GA-TTGGGGACT--GGCATTCT-TG-TTTTGGTTTATTCTAGCCC-TA--TT-TTCGACTTGC--A-T--G-TACGTTCTGATGAAAAAAAATTCTACAAAATCA-TTGA-CCGCCGCCTTTAT-TAA-TTGAAAAAAAAAATTT-ATGAATGTTAT-T-TAT--T-T--AAT-AAAATAA-----AT-TTAAAAAAGGATTTTG--CAGGATTCG-AACACACTCCTCAGGATCAGT-ACAACA-CAAAAACATA-CAC-A--CAC---AC---CACTT-CG---CGTACCGTG-----ATT----TATAATATTCG-GAGGTTT-AA-ATTTGACTTC-ATAAAAGGAAGAAGTAA-A---TGCCCTA-AAGTTTTTCTTTAAAAA---GTG-TGTTTTTTGT-AT-ATAATGGGTC-CAGTCTC--CA-TTTTTTAAAAACATGAAAT-AGGATATACA-AGA-G--TTACG-CTATCCATTTGAAACCTTTCCTT--G---GGGGGACTTTGACCCCACG-TCATA-T-TCAA---A---C--TCAAT-TTTAATGG-CTATTTTACACACCT--ATTTTT-NATCAAAACTGCGT--TGA-----------CGCCCATG-------T-TAACAACC-CAAT-TA---TTAA-TCAAA-CCTCAATTAATTTTAGATATAAGAATC-TAA--T--TTGGTGT-AGTCGAGATCAC-----CG-AC-TAC-T--CA--TTTTTCACAA--------TA-GAA-C---CGAATT-T-TTGNCA--TTT-TG-AAATTTTA-G----AT-ATCCTG-CGT-CT-CAGAGC---G--GGATTTTGCCCCCGCCTTG-TG-CGCCCA-NATTCTTTACCGAAAGTTT
Reference ( family-1445 ) : TAATGGACATGTACTAAGGAAACA-GGG-CGC-ACAAGGTAATACCAATCCCCCGC-TTGCTATA-C-TGGAC-TTTTAAAA-AGGAAC-G--AC-AA-CTGAA-----TAACGAAAG-A---TAAC-C-AAGTT-GTA----TGT-GATAC-AGTCAG---TCACT-A-A-AGTTATATCC-T----GACGAGAG-CGCGTGTCT--GACGACAAA-GTATTCGA-GGTATA--TATAT-A-ATG-TATGAGGTATTTGTCATTCAA---TCTT-CGTGATATGAAGATAT-AATTTTT--T--TCACTTGAATGGAGGAAT-GTAG-ATTTTNTGCTGACAA-CAGACCT-C--AAGAGCACAT-GTCCCGCT-A--CTTCCCG--AAATGATTA-GAAAGCCT--TA-CTAAT-GATTTCTT-CGAA-C--CGCTCTGTAT-ATTCTGATGTC--CA-TT----CNA---CA-----A-TTAT----CA-----CAT---TT-CTACTG--C-AATCCCGC-GTTGCTG---C-AA---------------C---T---------TACGTTTTG--TTTTTTGCC--T-T-TAACT-G--C-TTTTTACAC---AAA------------TCA-C-A------C-GA-TTGGGGACT--GGCATTCT-TG-TTTTGGTTTATTCTAGCCC-TA--TT-TTCGACTTGC--A-T--G-TACGTTCTGATGAAAAAAAATTCTACAAAATCA-TTGA-CCGCCGCCTTTA--TAA-TTGAAAAAAAAAATTT-ATGAATGTTAT-T-TAT--T-T--AAT-AAAATAA-----AT-TTAAAAAAGGATTTTG--CAGGATTCG-AACACACTCCTCAGGATCAGT-ACAACA-CAAAAACATA-CAC-A--CAC---AC---CACTT-CG---C-TACCGTG-----ATT----TATAATATTCG-GAGGTTT-AA-ATTTGACTTC-ATAAAAGGAAGAAGTAA-A---TGCCCTA-AAGTTTTTCTTTAAAAA---GTG-T-TTTTTTGT-AT-ATAATGGGTC-CAGTCTC--CA-TTTTTTAAAAACATGAAAT-AGGATATACA-AGA-G--TTACG-CTATCCATTTGAAACCTTTCCTT--G---GGGGGACTTTGACCCCACG-TCATA-T-TCAA---A---C--TCAAT-TTTAATGG-CTATTTTACACACCT--ATTTTT-NATCAAAACTGCGT--TGA-----------CGCCCATG-------T-TAACAACC-CAAT-TA---TTAA-TCAAA-CCTCAAGTAATTTTAGATATAAGAATC-TAA--T--TTGGTGT-AGTCGAGATCAC-----CG-AC-TAC-T--CA--TTTTTCACAA--------TA-GAA-C---CGAATT-T-TTGNCA--TTT-TG-AAATTTTA-G----AT-ATCCTG-CGT-CT-CAGAGC---G--GGATTTTGCCCCCGCCTTG-TG-CGCCCA-NATTCTTTACCGAAAGTTT
gi|1 : TAATGGACATGTACTAAGGAAATA-GGGGCGC-ACAAGGCAATACCA-TCCCTCGC-TTGCTATA-C-TGGAC-TTTTAAAA-AGGAAC-G--AC-AA-CTGAAAT---TAACGAAAGCA---TAAC-C-AAGTT-GTA----T-T-GA-AC-AGTCAG---TCACT-A-A-AGTTATATCCCT----GACGAGAG-CG-GTGT-T--GATGACAAA-GTATTAGA-GGTATACGTATAT-ACATG-TATGAGGTATTTGTCATTCAA---TCTT-CGTGATACT--GATAT-AATTTAT--TA-TCACTTGA-TGGAGGAAT-G-AG-ATTTTATTGTGACAA-CAGACCT-C--AAGAGCACAT-GTCCCGCT-A--CTTCC-G--AAATGAT-A-GAAAGCCT---G-CTAAT-GATTTCTT-CGAATC--CGCTC-GTAT-ATTCTGATG-----A-TT----CAA---CA-----A-TTAT----CA-----CAT---TT-CTACTG--C-AATCCCGT-G--GCT----T-AA---------------C---T---------TACGTTTTG--TTTTTTGCC--T-T-TAACT-GG-C-TTTTTACAC---AAA------------TCA-C-A------C-GA-TTGGGG-CT--GGCATTCT--G-TTT-GGTTTATTCTAGCCC-TA--TT-TCGGACTTGC--A-T--G-TACATTCTGATGAAAAAAAATTCGACAAATGCA-TTGA-CCGCCGCCTTTATTTAA-TTGAAAAAAAAAATTTAATGAATGTTAT-T-TATTGT-T--AAT-AAAATAA-----AT-TTAAGAAAGGATTTTG--CAGGATTCG-AACA-ACTCCTCAGGATCAG--ACAACA-CAAAAACATA-CAC-C--AAC---AC---CACTT-CG---CGTACCGTG-----ATT----TATAATATTCG-GAGGTTT-AATATTTGACTTC-ATAAAAGGAAGAAGT-A-A---TG-CCTA-AAGTTTTTCTTTAAAAACGTGTG-T-TTTTTTGTAAT-ATAAT--GTC-CAGTCTC--CA--TTTTTAAAAACATGAAAT-AGGATATACA-AGA-G--TTACG-CTATCCATTT-AAACCTTTC------------GGACTTTGACCCCACG-TCATA-T-TCAA---A---C--TCAA--TTTAATGG-CTATTTTAC---CCT--ATTTTTCAATCAAAACTGCGTA-TGG-----------AG-CTATG-------TCTAAC-ACC-CGAT-TA---TTAA--CAAATTCTCAATTAATTTTAGA-ATAAG-ATC-TAA--TTCTTGG-GT-AGTTTAGATCAT-----CG-AC-TACTT--CA--TTTTTCATAAT-------TA-GAA-C---CGAATT-T-TTGTCAG-TTT-TG-AAATTTTATA----AT-ATCCTG-TGT-CT-CAGAGC---G--GGATTCTGCCCCCGCCTTGTTG-CG-CCA-TATTCTTT
gi|10 : T--ATTGTT-AATTCAACCTGCCC--TGA-----------CGC--ATG-------T-TAACAACC-CAAT--A---T-AA-TCAAA-CC----GTAATTT-AAATATAAGAATCCTAA--T--TTGGTGT-AACCGAGATCAC------A-ACGTAT-T------TTTTGCACAA--------TA-GAA-C---CGAATT-T-TTGGCA--TTTAAG-AAAATT---G----AT-ATCT---CGT-CT-CATAGA---G--GTATTTT--CTCTGCCTTG-TG-CGCCCA-TATTCcaagaaattt
gi|11 : ctcaaatcttttaaattcaatggtatgtaaccgaaagaattttctgaaT--ATTGTT-AATTCAACCTGCCC--TGA-----------CGC--ATG-------T-TAACAACC-CAAT--A---T-AA-TCAAA-CC----GTAATTT-AAATATAAGAATC-TAA--T--TTGGTGT-AACCGAGATCAC-----CA-AC-TAT-T--TA--TTTTGCACAA--------TA-GAA-C---CGAATT-T-TTGGCA--TTT-AG-AAAATTTA-G----AT-ATCCTT-CGT-CT-CAGAGA---G--GTATTTT--CTCTGCCTTG-TG-CGCCCA-aa
gi|12 : ctcaaatcttttaaattcaatggtatgtaaccgaaagaattttctgaaA-CAC-AATCAC---AC---GACTT-GGGGAC-TACCGTG-----ATT----TATAATATTCAAGAGGTTT-AA-ATTCGACTCC-ATAAAAGGAA--AGTAA-A---TG-CCTC-AAGTTTTTCTTTAAAAA---GTG-TGTTTTTTGT-AT-AGAATGGGGC-CAGTCTC--CA-TTTTTTTTAAACAGGAAAT-AGGATATACA-GAG-G--TTA
gi|13 : AAGAAAACA-GGG-CGC-ACAAGGTAATACCAATCACCCGC-CTACTAC--C-TGGAC-TTTTAAAA-AGGAAC-G--AC-AA-CTGAA-----TAAC-------------C-C-AAGTT-GTA----TGT-AATAC-AGTCAG---TCACT-A-A-AGTTATA--------------------CGTGTCT--GACGACAAA-GTATTTGA-GGTATA--TGT--------------GGTACTTGTCATTCAA---TCTT-
gi|14 : AAGAAACA-GGG-CGC-ACAAGGTAATACCAATCACCCGC-CTACTATC-C-TGGAC-TTTTAAAA-AGGAAC-G--AC--A-CTGA----------------A---TAAC-C-AAGTTGGTA----TGT-AATAC-AGTCAG---TCACT-A-A-AG-TATAT------------------ACGTGTCT--GACGAC-AA-GTATTTGA-GGTAT---------------TATGTGGTACTTGTCATTCAA---TCTT-
gi|15 : A---CAT----A-TTATTGAGCA-----TTT---TT-CTACTG--C-CATCCCGC-G
gi|15 : tc-AA---------------C---T---------TATGTTTTT--GTTTTGGCC--T-T-TTACT-G--C-TTTTTACAC----AA------------TCA-C-A------C-GACTTGGGGACattctggagcaaagtatgtaaacatttgatcaaaacttatgtttttgttttggccttttactgctttttacacaatcacacgacttggggac
gi|16 : tcacatattattgagcatttttctactgccatcccgcgattctggagcaaagtatgtaaacatttgatcaaGTGT-AGTCATGATCACGATACCG-A--TAC-T--CA--TTATTTACAACAATACAGTA-GAA-C---CGCATT-T-TTGGCATTTTT-TA-AAATTGTA-GAATAAT-ATCCT--CGTGTT-CAGAGCGAAG--GGA-TTTGCCC
gi|17 : aAA--------TA-GAAAC---CGAACT-TGTTGTCAA-TTT-TG-AAATTTTA-G----AT-ATCCTG-TGT-CTCCAGAGC---G--GGGATTTGCCCCGACCTTG-TGCCGCCCAGAATTCTTT-TCGAAAGTTT
gi|18 : caAAAGAAACA-GGG-CGC-ACAAGGTAATGCCCAT-CCCCGCTTTGCTATACC-TGGAC-TTTTAAAA---GGAC-GAAACAAA-CTGA
gi|19 : aaaaatctgaaaaaagaacgaatatggTTTTA-G----AT-ATCCTG-TGT-CT-CAGAGC---GACAGA-TTTG-CCCTGACTTG-TG-CACCCA-TATTCTTTA
gi|2 : ttTAATGGACATGTACTAAG-AAATA-GGG-CGC-ACAAGGCAATACCAATCCCTCGC-TTGCTATA-CCTGGAC-TTTTAAAA-AGGAAC-G--AC-AA-CTGAAAAT--TAACGAAAG-A---TAACTC-AAGTT-GTA----TGT-GATAC-AGTCAG---TCACT-A-A-AGTTATATCC-T----GACGAGAG-CGTGTGTTT--GATGACAAA-GTATTAGA-GGTATACGTATAT-ACATG-TATGAGGTATTTGTCATTCAA---TCTTCCGTGATATGAA-ATAT-AA-TTTA--T--TCACTTGAATGGAGGAAT-G-GG-ATTTTATG-TGACAA-CAGACTA-CA-AAGAGCACAT--TCCCGC--A--CTTCCCGAAAAATGATTA-GAAAGCC---TG-CTAAT-GATTTCTT-CGAA-TCACGCTC-GTAT-ATTCTGATG-----A-TT----CAA---C------A-TTAT----CA-----CAT---TT-CTACTG--CAAATCCCG----TGCT----T-AA---------------C---T---------TACGTTTTGGTTTTTTTGCC--C-T-TAACT-GGCT-TTTTTACAC---AAA------------TCA-C-A------C-GA-TTGGGGACT--GGCATTCT-TGTTTTTGGTTTATTCTAGCCCTTA--TT-TTCGACTTGC--A-TAGG-TACATTCTGAT-AAAAAAAATTCGAC-AAATCATTTGA-CCGCCGCCTTTATTTAA-TTGAAAAAAAAAATTT-ATGAATGTTATAT-TAT--TGTTAAATAAAAATAA-----AT-TTAAGAAAGGATTTTG--CAGGATTCG-AACAAACTCCTCAGGATCAG--ACAA-A-CAAAAACATA-CAC----CAA---AC---CACTT-CG---CGTACCGTG-----ATT----TATAATATTCG-GAGGTTT-AA-ATTTG-CTTC-ATAAAAGGAAGAAGTAA-A---TG-CCTA-AAGTTTTTCTTTAAAAC---GTG-TGTTTTTTGT-ATAATAATGGGTC-CAGTCTCAACA--TTTTTAAAAACATGAAAT-AGGATATACA-AGA-G--TTACG-CTATCCATTT-AAACCTTTC------------GGACTTTGACCCCACGTTCATA-TGTCAA---A---C--TCAATGTTTAATGG-CTATTTTACAC-CCT--ATTCTG-TATaattt
gi|20 : aaaaaccccaaaAACA-GGG-C-C-ACAAGGTAATACCAATCCCCCGC-TTGCTATA-C-CTGAC-TTTTTAAA-AGTAAC-gttttttttaaagcagttgtacgtgttaa
gi|3 : ag--AAGAGCACAT-GTCCCGCTTA--CTTCCCG--AAATGATTAAGAAAGCCTCCTA-CTAAT-GATTCTTT-CGAA-C--CGCTCTGTAT-ATT-TGATATCATCAGTTATCACCA---TA-----A-TTAT----TATTGAGCATCTGTT-CTACTG--C-A-TCCCGCTGTT-CT----T-AA---------------C---T---------TA-GTTT-G--TTTTGCGCCC-T-T-TAACT-G--CCTTTTTACACCACAAACACACAAT----TCA-CCA------C-GA-TTGGGGACTTTGGCATTCTATG-TTTTGGTTTATTCTAGCCCCTA--TTCTTCGACTTGCCCA-T--GCTACAATCTGATGAAAAAAAATTCTACAAAATCA-TTGA-CCGCCGCCTTTAT-TAATTTGAAAAAAAAAAATG-ATGAATGTTAT-TATATGCT-T----T-AAAATTA-----AA-ATAAAAA-------TG--CCAGGTTCGAAACACACTCC-CAGA--CAGT-ACAACA-CAAAAATAAA-AACTA--CAC---GCTAACACTT-CGCC-C-TACCGTG-----ATTCTAATAGAGTATTCG-GAGGTTTAAA-ATTTGACTTCAATAAAAGGGA-AAGTAACA---TGCCCTA-AAGTTT--------------G-----TTTCTTGT-AT-ATAATGGGTC-CAGTCTC--CATTTTTTTAAAAACATGATATCAGGATATACA-GAG-G--TAACA-CTAT-CATTTAAAACCTTTCCTTTAGAATGGGAGACTTTGA-CCCAC--TCATATT-TCAA---AACTT--TCAAT-TTTAGTGG-CTATTTTACAC-CCTTAATTTTT-CATCAAAACTGCGG--TTA-----------TGAGCGTG-------T-TAAC-ACC-CAATATA---TTAAGTCAAA-CCTCAATTAA-TTTAGATATAAGGATC-TAA--T-----GTGT-AGT-GAGATCAC-----CGAAC-T-C-T--CA--TTCTT-ACAAT-------TACGAA-C---CGAATT-T-TTGTCA--TTT-TGAAAATTTTA-G----AT-ATCCTG-GGT-CT-CAGAGCGG-G--GGATTTTG-CCCCGCCTTG-TG-CGCCCA-GATTcga
gi|4 : aca--AAT-AAAATAATAAGAGTGTTAAAAAGGTATTTTAAACAGATTTCG-AACACACTCCTCAG-ATCAGTTACAACAGTACAAATATAACAC-A--CGCGTAAC---CACTTTCG---C-TACCGTGTATGGATT----CATAGCAT-CG-GAGGTGA-AA-TTTTGACTTC-ATAAAAGTGAATAGTAA-AAAATGCCCTATAAGTTTT-CTTTAAAAA---GTGTT-TTTTTTGT--T-ATAATGGGTCATAGTCTC--CA--TTTTTAAAAACA-GAAAT-AGGATATAC--AGA-GGTTTACATCCAGTCATTTGAAACCTTTCTTTA-G---AAGAGACTATGACCGCAC---CA-A-C-GCAAAGTA---CTGTCAAT-TTTAAAGGCCTATGTT-TACACCT--ATTTTT-CATCAAAACTGAGT--TGA------------GCTTATGT------T-TAATCACC-C-AT-TA---TTAA-TCAAA-CCTCAATTAA-CTTAGATATAAGAATC-TAATTT--TTGGTGTGAGTTGAGATCAC-----CG-AC-TAC-T--CGATTTTTTCATAA--------TA-GAA-CGCGCAGATTGT-TTGTCA--TTT-TG-AAATTTTA-A----GTGATCCTGTTGT-CT-CAGAGCTG-G--GGA-TTTGCCCCC-CGTTG-TGCCGCCCA-GATTCT
gi|5 : -----TAACGAAAG-A---AACC-C-AAGTT-GTAAAAATGT-GATACCAGTCAGAAATCACT-A-ATATTTATATAC-TAAATGACAAGAGTCG-GTGT-----ATGACAAATGTATGCGATGGTATA--TATATTG-ATGGTAT----TATTTGTCATTCAAGGTCCTT-CGTGATATGAAGATATTAATTTTT--TATTCACTTGAATGGAGGAATTGTAGTATTTTTTGCTGACAAACATACCTAC--AAAGACACATTATCCCGCT-AAACTTCCCG--AAATGAT-A-GAA-GCTT--TAACTAATTGATTTCTTTCGAA-C--CGCTCTGTATTATTCTG-------TA-TT----CTA---CA-----GGTTAT----CA-----CAT---AT-TTATTGAGC-AATTTTTC--TAACTG---CCAA---------------TCCGT---------TACGTTTT----TGTTTGCCCCT-TATAACT-G--C-TTTTTACAC---AAAAAAACACAACAATCATC-A------CTGA-TTGGG-ACT--GGTATTCT--G-TTTGGTTTTATTCTAGCCC-TGATTT-TTCGACTTGC--AGT--G-TACATCTTGATGAAAATAATTACTACAAAATCA-TTGAGCCGCCGCCTTTA--TAA-TTGAAAAAAAAAA-TT-ATGA
gi|6 : GGTATCT----TTCAA---TCTT-AGTAATATTAA-ATAT-AATTCTTA-T--TGATTTAAATGGAAAAAT-GTAG-ATTTTGTA---ACAT-CAAACCT-AGAAAGTGCACAT-GTCTCGAT-A--CTCCCCG--ATATGAT-A-GAAAGCAC--TA-CTAAT-GACTTCT----------------GTAT-ATTCTGATGTT--TA-TT----CACTCTCAGTTTTA-TTATTGAGCA-----TTT---TT-CTACTG--C-AATTCCGC-GTTGCTGGAGC-AAAGTATTAAATGTTCTC---TCAAGTTATATACGTTTTG--TTTTGT-CC--T-T-TAACTAG-----TTTAACAC---AAA------------ACA-C-AACCATAC-GACTTCGGGA-T--GGCATTCT-TG-TTTTAGTTTTTTCTAACTG-CA--AA-TTCGACTTGC--A-T--G-TACG-TCTGGTG-AAAAAAGTTATGCAGAATTA-TTGA-ACGTCATCTTTA--TAA-TTGAAA
gi|7 : CTC--CA-TTTTTTAATA-CATGAAAT-AGGATATATACAGACG--TTACA-C
gi|7 : ggACACCT--ATTTT--CATCAAAACTGCGTCATGAGCAATATTCAACACCCATTATTAATTT-TAAAAACCATAAC-TAATTTTAA-TNNNN-NNNNNNNNNNNNNNNNNNNNNNNNNNN-NNN--N--NNNNNNN-NNNNNNNNNNNN-----NN-NN-NNN-NNNCA--ATTTTTACAA--------TA-GAG-C---CGAATT-T-TTGGCA--CTT-TG-AAAATTTA-G----AT-ATCCTG-TGT-nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngtttacacctattttcatcaaaactgcgtcatgagcaatattcaacacccattattaattttaaaaaccataactaattttaatnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncaatttttacaatagagccgaatttttggcactttgaaaatttagatatcctgtgt
gi|8 : ggctccattttttaatacatgaaataggatatatacagacgttacacnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngttt-----CAT---TTACTACTG--C-TATGCCGC-GTTGCTGGAGC-AA---------------C---T----------ACGTTTTG--TTTT--GCC--CAT-TAATT-G--A-TTTTTATAC---AAAACACAA------TCA-T-A------C-AAATTGGGGGCT--GGCATTCT-TG-TTTTGGTTTATTCTAGCCG-TA--TT-TTCGACTTGC--A-T--G-TACGTCCAG-TG--AAAAAGTTCTACAACATTA-TTGA-CCGTCACCTTTA--TAATTTGAAAAAAA-----T-ATGACTGTTA--------------AAT-AAAAT--------T-TTAAAAA--GGTCTTG--CAGGATTCG-AACAC
gi|9 : taacataatctttagCTAAG-AAACAAGGG-CGCCACAAG-TAATACC----------------------TGGACCTTTTAAAACAGGAACCG--AC-AAACTGAACAACTTAACGAAAA-GCACTAAC-CCAAGT--GTA----TGTTGATAC-AGTCAG---TCACTTATA-AGTTGTATCC-T----GACAAGAG-CGTGTGTTTTTGATGACAAA-GTATTCGACGGT-----TATAT-A-----TATGAGGTATT-GTCATTCAA---TCTT-CGTGATATGAAAATAT-AATTTTTAAT--TCATTTG-ATGGAGGAAT--TA--ATTTTCTGCTGACAA-C