lowQualScore : 11111111111111111111111111111111111 11111111111111111111111111111111111111111111111111111111111111111 1111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111 1111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 1 1 111 22 1 2222 11 11 1 1 11 22222 1 11111111111111111111111111111111111 2222 11 111 1 11 1 2222 33333333 33333333 1 3333333 22 222222 44444444444444444444 44444444444444444444444444444444444444444444444444444444444444444 11 11 1 1111 3333 22222 1 1 333333333 1 111 2222222 444444444444444444 1111 8888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888 4444444444 111 6666666666 4444444444444 4444444 11 4444444444 11 3333 33333333333333 9999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999 111 5555555555555555 111111111 11111 1111 11 6666666666666666666666666666666666666666666666666666666666666666666666666666 4444444444444
lowQualScore : 3 6 3 444 3 99 0 44 2 0000 333 3 33 8 66 0 5 3 33 2 55555 0 88888888888888888888888888888888888 3 1111 22 777 0 88 1 0 0 3 0 2 4 4 2 2 2 4444 44444444 4 5 44444444 0 222 0 5 6 5555555 3 55 1 000000 8 22222222222222222222 5 44444444444444444444444444444444444444444444444444444444444444444 77 3 6 6 3 6 6 6 1 3 6 3 44 5 77 6 5555 6666 11111 2 1 1 6 6 2 3 0 3 777777777 0 4 222 2222222 555555555555555555 3 4444 7777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777 5555555555 8 0 444 1 2222222222 2 8888888888888 6 3333333 55 2222222222 33 0000 8 88888888888888 222 5 33 8888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888 0 333 5 888 1 9999999999999999 999999999 22222 666 888 7777 2 11 7 8888888888888888888888888888888888888888888888888888888888888888888888888888 0 9999999999999 6 8 2 6
lowQualScore : . . . ... . .. . .. . .... ... . .. . .. . . . .. . ..... . ................................... . .... .. ... . .. . . . . . . . . . . . .... ........ . . ........ . ... . . . ....... . .. . ...... . .................... . ................................................................. .. . . . . . . . . . . . .. . .. . .... .... ..... . . . . . . . . . ......... . . ... ....... .................. . .... ............................................................................................................................................................................................................................ .......... . . ... . .......... . ............. . ....... .. .......... .. .... . .............. ... . .. ....................................................................................................................................................................................................................................................... . ... . ... . ................ ......... ..... ... ... .... . .. . ............................................................................ . ............. . . . .
lowQualScore : 3 7 3 000 2 00 0 00 5 0000 555 0 88 2 00 0 0 2 88 5 00000 0 00000000000000000000000000000000000 2 2222 55 888 0 88 2 0 2 2 8 2 5 2 5 0 5 8888 22222222 8 0 88888888 6 222 8 0 0 6666666 6 22 4 000000 0 88888888888888888888 2 22222222222222222222222222222222222222222222222222222222222222222 77 7 7 3 7 7 7 0 0 5 7 7 77 3 99 7 2222 7777 77777 5 0 0 7 0 5 7 8 7 888888888 3 3 888 7777777 666666666666666666 2 2222 6666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666 0000000000 0 8 333 0 8888888888 2 2222222222222 7 3333333 77 5555555555 22 5555 0 22222222222222 888 6 88 2222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222 7 111 0 888 7 4444444444444444 000000000 55555 555 888 5555 5 44 1 7777777777777777777777777777777777777777777777777777777777777777777777777777 8 5555555555555 0 8 2 7
consensus : CACCCAGAATCC-TACAGAC-CCAGGCTT--GGGAT-TTT-TTTTCCCGGACATCCCGGAGTCACAGGATGT--AACGGGA-CTGG-AACTGGGCCTCTACAA--CNCT-----C-AGAATGCATCGGAAACC--TC-CGGNCC-NGA--------ACAAAGAAGAT----TTTGCGAT-CATT--NC-CAC-CACGCTAG-ACGGGATCGTTAACCGCATTAATGTGCTGAGTGACGAAATTGGAAATCATACCANAATCCTGCTGAAGAAGCTGGAAGAGCTGACGNNNAAAAA----N---CCCAGGAAGGAATA-CGCTCCAGATTACGCTACTAACCCGTGCTACACTTGTGGAG-----AAACAGGACATTGGTCGCCG----G-ATTGCCCGCAGAA-AA------------CAGATTCCCCGCAGACCAGTAAGAAA------T------TGG----C----AGAT---------TC-CC----A----------NC-----AGACCAGCAAGAAAACCA-AACAAAAGGATCC-TTGCTACAA-GTGCGGAAAACTAGGACACTGGATCA-GTGACTGTCCGGAA--GAACAAGCCGAGATAGATGCGATGATTCC-CCCCGTACCTGGCTCAAAACCNCCCGTGAAGAGAGAGTACAAACCGTTAGAGATGTGGAACCCGC-CCGCACCTAAACAAACCACTGAAGAACCGC-C--G-AAAAGAAGANGAAACTNAGC-CGAAA-----G-TAAA-ACTGGACTGTGCTT-GTGAACTGTTTNT--ATGCT----TANT---C------AA---CTGTT--TNA--AAACTGT-TTT----------A--A-AAA---GCTGTGCGTTG--T-TC--------------TA----TGCTTTAATAAACATGTAAACTT--AAA-CCCTGNGCTA----TTC-------------TTACCAATCTTGGATNTTATGC---------ACN-GGATTT---CA-----TGCACTGGATTT------AGCGAT-ACACAGGA-T-CACAGGATTTTA----C-----TGGANTTTATGCCTTGGAT----CGATA-CACATTCC-------TAAAAGTGCTACATTT------TTT-TTGACGTCA-TAATGCACTTCTC-CAAGTCCCG---A-----CCGAATGACGTCACAATAGCCAGTA------GCTCGCGCTC----CTGTGCTAA--AACCT----CT-----CT-AAACTA--GGCCA-ACGNCA-----ATAC----ACT----------CT-A-------GGCCG-----GC----CTATA-AACC--------------GGGCTA--------------TAAAC----CCGG-----CCGTGCTAT--AA-----A-C--C--GGC----------------CTAGC-----GACCCCTGCTGGGGTCAAACC-GCTTGA-CC---AATCAGCA--------------TTGACCTCATTTG-CA-TAAAAA-----GTGCACTC-AG---TTG----ANCC-CCCNATGGA------GG--------C--------GC-TTG-ACC--------------------ACTCCG---TTGACCCAGC-AATCAGCGTCCTAGATATTGAACTC----------NCCATGGAGGCCGGTTATACTACT
Reference ( gi|3 ) : CACTCAGAATCC-TACAGAC-CCAGGCTT--GGGAT-GTT-TTCCCCCGGAGATTCCAGAGTCACAAGATGT--AACAGGG-CTGG-AACTGGGGCTCTACAA--CCCT-----C-AGAATG-------AACC--TC-CGAACC-TGA--------ACAAAGAAGAT----TTTGCGAT-CATT--AC-CAC-GACACTAG-ACGGGATCGTTAACCGCATTAATGTGCTGAGTAATGAGATTGGAAATCATACCACAGTCCTACTGAAGAAGCTGGAAGAGCTGACGGGTAAAAA----G---CCTAGGAAGGAATA-CACCTCAGATTACGCTACTAAACCGTGTTACACTTGTGGAC-----AAACAGGACATTATTCGCCG----G-ATTGCCCACAGAA-AA------------CAGATTATCCGCAGACCAGTAAGAAA------T------TGG----C----AGAT---------TC-CC----A----------CC-----AGACTAGCAAGAAAACCA-AACAAAGGGATCC-TTGCTACAA-GTGCGGAAAATTAGGACACTGGATCA-GTGAACGTCCTGAA--GAACAAGCGGAGATAGCCGAGATGATTGG-TCCCGTACCTGGCTCAAAACCCACTGTGAAGAGAGAGTACAAACCGTTAGAGATGTGGAATCCGC-CCGTACCTAAACAAACCAGTGAAGAACTAC-C--G-AAAAGAAGAAGAAACTTAGC-CGAAA-----G-TAAATACGGGACTGTGCT---TGAACTGTTTTT--ATGCT----TATT---C------AA---CTATT--TAA--AAACTGT-TTT----------A--A-AAAC--ATTGTGCATTG--T-TC--------------TA----TGCTTTAATAAACATGTAAACTT--AAA-CCTTGTGTTA----TTC-------------TT------------TATTATGC---------ACA-GGATTT---CA-----TACACAGGATTT------A---AT-ACACAGGAATACATAGGATTTTA----C-----TGGATTTTATCCCTTGGAT----CGATA-CACATTCC-------TAAGTGTGCTACATTT------TTT-TTGACGTCA-TAATGC---TCTC-CAAGTCCCA---A-----CCGAATGACGTCATAATAA-----A------GCTC----------CTGTGCTAA--AAC------CT-----CT-AAACTA--GGCCA-GCGGCA-----ATAC----ACT----------CT-A-------GGCCG-----AC----CTATA-AACC--------------GGGCTG--------------TAAAC----CCGG-----CCATGCTAT--AA-----A-C--A--GGC----------------CTAG------GACCCCTGCTGGGGTCAAATC-GCTTGA-CC---AATCAGCA--------------TTGACCTCATTTG-CA-TAAAAA-----GTGCACTC-AG---TTG----ACCT-CCCTATGGA------GG--------C--------GC-TTG-ACC--------------------ACTCCG---TTGACCCCGCCAATCAGCGTCCTAGATATTGAACTC----------CCTATCGAAGCGGGTTATACTACTAC
gi|2 : CACTCAGAATCC-TACA-AC-CCAGGCTT--GGG-T-TTT-TTTTCCCGGAGATTC-AGAGGCACAAGATGT--CACGGGA-CTGG-AACTGGGCCTCT-CAA--CCCT-----CCAGAATG-------AGCCCTTC-CGG-CC-AGA---------CAA-GAAGAC----TTTGCGATTCATT--AC-CACCGACATAAG-ACGGGATTGTTA--CGCATTAATGTGCTGCGTAATGAGATTGGAAATCATACCACCGTCCTGCTGAAGAAGCTGGAAGACCTGACGGGGAAAAATCTAGATCCCTAGGAAGAACTATCACTCCAGATTCGGCTA-TAACCCGTGCTCAACTTGTTG-CGTGTGAAACAGGGCATTGGTCGCCG----GTATTGCCCCCAGAATAG------------CAGATTTCCCGCA-ACCAGTAAGAAAGATT--T------TCG----C----AGACAGTAAGAAATCGCCGATAA----------CC-----AGA---GAAAGAAAAC-A-AACAACGGGATCCCTTGC-ACAAAGTGCGGGAAATT-GGACACTGGATCAAGTGACTGTCCGGAAAAGAA-AAGCGGAG-TCGATGAGATGATTGGGCCCCGTAACTGGCTCAAAACCCGCT-TGAAGAGAGAGTACAAACCGCTAGAGA-GT----CCCCT-CCGCACT-------AC---TGAAGAAC-GC-CTTA-AAAAGAAGA-GCAACTGAGCACGAA------G-TAAAAA---AA----ACT---TGAACTGTTTTTTTATGCTGAACTGTT---T------TA---C-ATTGATAACTGAACTGT-TTTTATGCTGTTTA--ATAAACTGGTT-TGAGTTG--T-T----------------------GCTTTAATAAACATGTAAACTT--AAAACCTGGTGT-A----GTC-------------TT------------TATTATGCTGAGCGAATACACAGATTTAAACAAGGAATAGACTGGATTTTTATGCG---ATGATACAGGAATACACAGGAAC--A----C-----TGGATTTTATGC----GAT----CGATAACACATTCC-------TAAGTGTGATACATTT------AT----GACGTCAATAATG----TCTCTCAAGGTCCG---ATTTTTCAGAA--ATAGCAT--TCA-----G------CCTT----------TTTCACGAATCAAG------C---------GAAGTA--GATCC-ACGGCA-----ATAT----A------------------------GCCA-----AC----TTATATAACC--------------GC-CTC--------------TAAAC----C-AG-----CCGTGCTAT--AAT----A-C--C--GGTACTCTAAACCGG----CTAG------GACCCCTGCTGGGGTCAAA-----CTGA-CC---
gi|1 : ttttcacattttacacctgcaaccagagaacatggctctagatgaacaggctagaattcgtggacagagtcagaagaagtgaataacatggtacgaaaaagacgggaatgcaacaggagatttcttggcgaagcaaacagttagacagggtacatgagcttacattggcacagcagctgataaaaggcaaggactgaggatttctaatacgctACCCAGAATAT-GACAGAC-CCAGGCTT--AGGAT--TT-TTTTCCCGGACTTCCCGGAGTCACCGAATGT--AACGGGA-CTGG-AACTGGGTCTCTACAA--CACT-----C-AGAATGCATTGGAAACC--AC---AGCCATGA--------ACAAAGAAGAT----TTTGCGAA-CATT--TC-CAC-CATGCTAG-ACGGGATCGTTAACCGCATTAATGTGCTGAGTGACGAAATTGGAAATCATACCAGAATCCTG-TAAAGAAGCTGGAAGAGCTGACAGCCAAAAA----A---CCCAGGAAGGAATA-CGTCCCCGATTACGCTACTAACCCGTGCTACACCTGTGGAG-----CAACAGGACATTAATCACCG----G-ATTGCCCACAGAA-AA------------CATATTCCCCGCAAACCAGTAAGAAA------TCC----TGGTCGTC----AGAT---------TC-CC----AGAGTAAGAATTCACAGAAGACCAACAAGAAAACTA-AACAAAAGAATCC-TTGCTACAA-GTGCGGAAAACTAGGACACTGGATCA-GTGACTGTCCGGAA--GAACAAGCTGAGATAGCTGCGATGATTCC-TCCAGTACCTGGCTCAAAACCGCCCGTGAAGAGAGAGTA-ACACCGTTAGAGATGGGGAACCCAC-CCGCACCTAAACAAACCAGTGAAAAACCAC-C--G-AAAAGAAGAAGATACTCAGC-AAAAA-----A-TAA--ACTGGACTGTGCTTAGTGAACTGTTTGT--ATGCT----TAGTGAGCACTGTGAA---CTGTT--TAA--AAACTGTGCTT----------AGTG-AAA-----TGTGCATTG--T-TCTTGTTTCAAATGTTTA----TGCTTTAATAAACATGTAAACTTAAAAA-CCTTGTGTTATTATTTCACCCAGCTTGTGATT------------TATTAT---------------GGATTT---CA-----T-----GGATTT------A---AT-ACACAGGATTTCATAGGATGTTA----------TGCACTGCAT--GTT--AT----CGA------ATTTT-------TAACAGTGCAACA-----------T-TTGACGTCA-TAATGCACTTCTC-CAAGTCAAA---A-----CCGCTTGACGTCACAATGGCCAGTA------GCTCGCGCTCCACGCTGTGCTAA--AATCTGCA-CT-----CT-AAACTA--GGCTA-AT-ACA-----CTGC----GCC----------CTCAACCC---GGCCGGGCTCACAGGGCTATA-AACCCGGCCGGGCTCACAGGGCTA--------------TACA-----CCGG-----CCGTGCTAT--TA-----A-CCGATCGGG----------------CTAACCGTC-GACCCTTGCT-GGGTCAACCC-GCTTGA-CC---AATCAGAA--------------TTGACATCATTTG-CA-TAAAAA-----TTGCACTC--G---TTGAA--ACCA-CCC-ATGGA------GG--------C--------GCGTTATACT--------------------ACTcgtctatgctatttgaaccgcccatcgagccctgaaaacgcttgaacctcaagtcagcaagaaccgcatctgcttgacctcatttgtcataaaaacaacggtgcactcaagttgtgaaacctcccctatggagggcggaggctactaa
gi|6 : ggctataaaagcagagtccccgctttcacttttcacatcgacttcagaccttgacctgagaacatggctcagaaacagctataattcgtggacagggctcagaagaaagtggataacatgatacagaaacagacagggcttcagaaagatgtcttgaaagaagaggacagacaagaggtacaggaggcttacattgcacatcagctgaaaaaggcgaagactgaggagtatctacctCAGAATCCTTACAGACTCCAGGCTTCATGGAT-TTTATTTTTCCTGA-----CA----CACAGGATGGCAAACCGGATCTGGAAACTAGGTCTCTATAATCTCCTCACTAC-AGAATG---------CA--TCGCGAACT-AGAGCCCTCCCACTGACAAGATAACATTTCCGCT--ATTTCACATAC-CACTCTAGAACAAGATAGTAAACAAGATTAATGGACTGGTCGAGGATATTGGTAA
gi|4 : gctataaaaatcaggccagatgtcctacacttcaatccgacttcagacagtgagcagacaacataggcacagaaacgggctagattttgtgcgacagaagttcagaagaaagtcaatagatagtacacacttcagtatcagttgggtcccagaaatatttacttgagtgaaagaggacagatatgagccttacatgctggcacatccagctaaaaaaggcgcaggaacaagccaatggttatatagcGGCTT--GGGATTATT-TTCCC--GAACATCCCGGAGTCACAAGATGT--AACGGGA-CTGG-AACTGGGCCTCTACAA--CACT-----C-AGAATGTATCGGAGACC---C-CGGTCA-TGA--------ACAAAGAAGAT----TTTGCGAT-CATT--TC-CAC-TACACTAG-ACGGGATCGTTAACCGCATTAATGTGCTGAGTGACGAAATTGGAAATCATACCACAATCCTACTGAAGAAGCTGGAAGAGCTGACGCCTAAAAA----C---CCCAGGAAGGAATA-CGTTCCCAATTACGCTACTAACCCGTGCTACACTTGTGGAG-----AAACAGGACATTGGTCGCCG----G-ATTGCCCACAGAA-AA------------CAGATTTCCCGCAGACCAGTAAGAAA------T---------------------------------------------------CC-----AGA-TAAAACAAAAACCA-AACAAAAGGATCC-TTGCTACAA-GTGCGGAAAATTAGGACACTGGATCA-GTGACTGTCCAAAA--GAACAAGCGGAGATAGCTGCGATGATTCC-TCCAGTACCTGACTCAAAACCCCCTGTGA--AGAGAGTACAAACAGTTAGAGATGTGGAATCCGC-CCGCACCTAAACAAACCACTGAAGAACCAC-C--G-AAA--AAGAAGAAACTCAGC-AAAAA-----G-TAA--ACTGGACTGTGCTTTGTGAACTGTTTTT--ATGCT----TACT---G------AA---CTGTTACTGT--GAACTG--TTT----------A--A-A
gi|12 : GGAACCATACAAGAATCCTACTCAAGAAGCTGGGAGAGCTGAAGTAGAAAAA----C---CCCATGAATGAA---------ATAT----CCACTAACCTCTGCTGCACTTGTA--------AAACAG--------------------ATTGCCCACAAAA-AA------------C------------------CAAGAAAAC----C------TGG----TCTCTAAAT---------TC-TT----C----------GC-----AGAAAACCAAGAAAACTAGAACGAAGG-ACCC-TTGCTACAA-GTGCGGTAAACTTGGACATTGGATCA-ACAATTGTCCGGAA--GAACAAGC
gi|7 : GAAAAAGATGGAAGAGCTGAC--------A----G---C----GAA--AA----ACTCCAGA-TACGCCACT-ACCCGAGCTACACTTGTGGAG-----AAATAGGCCATTG-TCACCGGATTG-ATTGCCTGCAGAA-AACTAAGAAAACCTCAGATTCCCCGCAGACCAGTAAGAAATCCCGGT------TGT----C----AGAT---------TC-CC----A----------GC-----AGACCAGCAAGAAAACCA-AAGAAA--AATCC-TTGCTACAA-GTGCGG-AAACTAGGACACTGGATCA-GT-AACGTCCGGAA--GAACAAGCCGAGATAGATGCGATGATC-C-CCCCGTACCTGGCTCAAAACCGCCCATCAAGAGATAGTACAAACCGTTAGAGATGTGGAA-CCGCGCCACACCTAAACAACCTACTGAA-AAC-ACGCAGA-AAAAAAAGATGAAGCTTAGC-CGAAA-----G-TAAATGC
gi|10 : CCGCAGACCAGTAAGAAA------TCCCGGTTGT----C----AGAT---------TC-CC----A----------GC-----AGACCAGCAAGAAA-CCA-AAGAAAAGGATCC-TTGCTACAA-GTGCGGAAA-CTAGGACACTGGATCA-GTAACTGTCCGGAA--GAACAAGCCGAGATAGATGCGATGATCC--CCCCGTACCTGGCTCAAAACCGCCCATCAAGAGATAGTACAAACCGTTAGAGATGTGGAACCCGC-CCACACCTAAACAACCTACTGAAAAACCGC-A--GAAAAAGAAGATGAGCTTTAGC-C--AA-----GTTAAATGC
gi|11 : aaatcatccccGAA--GAACAAGCTGAGATAGAAGCAATGAT--G-TCCC-----CGGTTC----CCTGC----AAGAGAGGGTACAAACCTTGAGAGATGTGGAAACCTC-CAGCGCCTAAA-AGACCACTGAAGAACCGC-A--GAAAAAGAAGAGGAAACTAAGT-AGAAATTAATGTTAAACTCTGGACGGT--TA--TAAACTG--TGA--ACTCT----TA-----C------AAAAGCTGT--------AAACTGT-TAT----------A--A-------GCTGTGAACTG--TGTT--------------TATGGGTGGTTTAAAAAAAATGAAGATTT--ttga
gi|15 : T--TCA--AACCTGT-GTT----------C--A-A------CTGTGC-TTAAAT-GC--------------TG----TGCTT-AATA--CAT--AAGCTT--AAA-CCCTGAGCTA----TTC-------------TTACCAATCTTGGATTTTATGC---------ACT-GGAATT---TA-----TGCCTTGGATTT------AGCGAT-ACACA
gi|14 : ccT--TCA--AACCTGT-GTT----------C--A-A------CTGTGC-TTA--A-AC--------------TC----TGCTTTAATA--CAT--AAGCTT--AAA-CCCTGAGCTA----TTC-------------TTACCAATCTTGGATTTTATGC---------ACT-GGAATT---TAT----TGC-TTGGATTT------AGCGAT-ACACAttccgagactttaaaagtgctacatt
gi|8 : tccA-GGATTT---CA-----TGCAC-GGTTTT------A---AT-AC-----------CAGGATTTTA----TACCGTTGGATTTTA-------G------TGATA-CACATTCC-------TAAAAGTGCTA-ATTTAAGGAATTTGTTGACGTCA--AATAC---TTTT-CACTTCTCGTCCA-----CCGCTTGATG-CACAATAGCCAGTA------GCTCGTGCTCCAAACTGTGCTAA--AAC------CTGCCA-CTCAAACTA--GGCTA-A-ATCA-----ATGC----ACTGCGCTCTCAACT-A-------GGCAG------C----CTATA-ACCC--------------GGGCTA--------------TAAAC-----CGG---------GCT-------------------GGC--------------------------GACCC-TGCTGGGATCAAAACAGCTTGA-C-----ACCTAC---------------TTGACCCC-----------------------CAC---------TG----ACATGTCCGAT---------GA--------C--------GC-C---ATC--------------------ATT--------GAC-CAGCAAACCAGCGTCCTAGATATTGAAA-C----------CCCATCGGAGGCGTTTATACTACTttccgagactttaaaagtgctacatt
gi|5 : gtGGGTTTTA----TGCAG-CGGATTTTATGCCTTGGAT----CGATA-CACATTCC-------TACACGTACTACATTT------TTT-TTTACGTCA-TAATGCACTTCTC-CAAG-GCTA---G-----CCGAATGACGTCACAATAG-----AGCTCGCGCTC----------CTGTGCTAA--AACCTGCA-CT-----CT-AAACTA--GGCCA-ACGGCAATTTGATAC----ACTCTCAA-----CT-A-------GGCCAT----ACG---CTCTA-AACC--------------CGGCCGGGCTCACCGGCCTCTAAAC----TCGG-----CCATGCTAT--AATCCCGACC--G--GGCTATAAACCCGGCCGGACTAG------GACCCCTGCTGTGGTCAAACC-TCTTGA-CC---AATCAGCA--------------TTGACCTCATTTG-CA-TAAAAA-----GTGCACTC-AG---TTG----AACT-CGCTATGGAAACCGGGG--------CCAGGTCAAGC-TTG-ACCCCCACTGCGCATGTGCGATGACCCCGCCATTGACCCAGCCAATCAGCGTCCTAGATATTGAACTC----------GCCATGGAGGCCGGTTATACTACTca
gi|15 : GGATTTTATGCAC-----TGGAATTTATGCCTTGGATTTAGCGATA-CACATTCCGAGACTTTAAAAGTGCTACATTtccgt
gi|14 : ccttcaaacctgtgttcaactgtgcttaaatgctgtgcttaatacataagcttaaaccctgagctattcttaccaatcttGGATTTTATGCAC-----TGGAATTTATTGCTTGGATTTAGCGATA-CACATTCCGAGACTTTAAAAGTGCTACATT
gi|13 : tccttcaaacctgtgttcaactgtgcttaaactctgctttaatacataagcttaaaccctgagctattcttaccaatctt---TCTC-CAAGTCC-A---G-----CCGAATGACGTCACAATAGCCAGTA------GCTCGCGCTT----CTGTGCTAA--AACCTTGCACT-----CT-AAACTA--GGCTA-A----A-----ACAC----TCTCAA-------CT-A-------GGCCA-----GC----CTATA-AACC--------------AGGGTA--------------TACAC----CAGC-----CCGTGCTCT--AA-----A-C--C--GGG----------------CTAG------GACCCCTGCTGAGGTCAAACC-GCT
gi|9 : actgcttgttatagcatagaggaacattggatgagcaaatataatgctttttcactCTC----------CTGTGCTAA--AAC------CTGCACTCT-AAACTATAGGCCA-A-GTCA-----AAAC----ACTGCG-------CT-ATCAACCCGGCCG-----GG----CTC----ACC--------------GGGTTA--------------TAAAC----CCGGCCTCACCAGGCTAT--AA-----ATC--C--GGT----------------CTAG------
gi|2 : C------CT-----CT-AAACCA--G-CCGTGCTATA-----ATACCGGTACT----------CT-A-------AACCG-----GC-----TAGG-ACCC--------------CTGCTGGGGT----------CAAACTGACCCGT-----CTATGCTATTTGA-----A-C--C--G-C----------------CCATC-----GAGCCCTG--------AAAAC-GCTTGAACCTCAAGTCAGCAAGAACCGCATCTGCTTGACCTCATTTGTCA-TAAAAACAACGGTGCACTCAAG---TTGTGAAACCTCCCCTATGGA------GG--------atataaaccaggccgggctagcccagcctctaaacccggctgtgctataaacccggccgggctagcccggcgacccctactggggtcaaactgcgcactccgttgaccccaagcgtcctagatattgaaccggccatggaggcccgaaaccgcttgaccaatcagaagtctccctgctttaccttatttgcataaaaagtgcactcagttgaaccgcctatgtattggcgttatacca
gi|9 : ttttcacattttacacctgcaaccagagaacatggctctagatgaacaggctagaattcgtggacagagtcagaagaagtgaataacatggtacgaaaaagacgggaatgcaacaggagatttcttggcgaagcaaacagttagacagggtacatgagcttacattggcacagcagctgataaaaggcaaggactgaggatttctaatacgctcactcagaatcctacaacccaggcttgggttttttttcccggagattcagaggcacaagatgtcacgggactggaactgggcctctcaaccctccagaatgagcccttccggccagacaagaagactttgcgattcattaccaccgacataagacgggattgttacgcattaatgtgctgcgtaatgagattggaaatcataccaccgtcctgctgaagaagctggaagacctgacggggaaaaatctagatccctaggaagaactatcactccagattcggctataacccgtgctcaacttgttgcgtgtgaaacagggcattggtcgccggtattgcccccagaatagcagatttcccgcaaccagtaagaaagattttcgcagacagtaagaaatcgccgataaccagagaaagaaaacaaacaacgggatcccttgcacaaagtgcgggaaattggacactggatcaagtgactgtccggaaaagaaaagcggagtcgatgagatgattgggccccgtaactggctcaaaacccgcttgaagagagagtacaaaccgctagagagtcccctccgcactactgaagaacgccttaaaaagaagagcaactgagcacgaagtaaaaaaaacttgaactgtttttttatgctgaactgttttacattgataactgaactgtttttatgctgtttaataaactggtttgagttgttgctttaataaacatgtaaacttaaaacctggtgtagtctttattatgctgagcgaatacacagatttaaacaaggaatagactggatttttatgcgatgatacaggaatacacaggaacactggattttatgcgatcgataacacattcctaagtgtgatacatttatgacgtcaataatgtctctcaaggtccgatttttcagaaatagcattcagcctttttcacgaatcaagcgaagtagatccacggcaatatagccaacttatataaccg----------CC-A-------GGCCG-----GG----CTA---GCCC--------------AGCCTC--------------TAAAC----CCGG-----CTGTGCTAT--AA-----ACC--C--GGCCGGG------------CTAGCCCGGCGACCCCTACTGGGGTCAAACT-GC--G---C---ACTC--CG--------------TTGACCCC-------------AA-----GCGTCCT--AGATATTG----AACC-GGCCATGGA------GGCCCGAAACC--------GC-TTG-ACC--------------------AATCgcggaggctactaa
gi|9 : ctcctgtgctaaaacctgcactctaaactataggccaagtcaaaacactgcgctatcaacccggccgggctcaccgggttataaacccggcctcaccaggctataaatccggtctagatataaaAAACC-GCTTGA-CC---AATCAGAAGTCTCCCTGC----TTTACCTTATTTG-CA-TAAAAA-----GTGCACTC-AG---TTG----AACC-GCCTATGTATT----GG--------C--------GT-TAT-ACC--------------------Aagaagtctccctgctttaccttatttgcataaaaagtgcactcagttgaaccgcctatgtattggcgttatacca
gi|17 : ctcctgtgctaaaacctgcactctaaactataggccaagtcaaaacactgcgctatcaacccggccgggctcaccgggttataaacccggcctcaccaggctataaatccggtctagatataaaccaggccgggctagcccagcctctaaacccggctgtgctataaacccggccgggctagcccggcgacccctactggggtcaaactgcgcactccgttgaccccaagcgtcctagatattgaaccggccatggaggcccgCTCGA-CC---AATCAGAA--------------ATGACCTCAC--------AAAAA-----GTGCACTT-AG---TTA----AACC-AGCCATAGA------GG--------C--------AC-CT
gi|18 : acctccaaccgcactatgttgaaccagccatctaccccacctaccCACTTT-CACTCAAAA-----GTGCACTC-AG---TTG----ACCT-CCCATTGGG------GG--------tatacta
gi|1 : --------C--------GC-TTG-ACC--------------------AATCAGAA-TTGAC-------ATCATTTGCATAAAAATTGCACTCGTTGAAACCACCCATGGAGGCGCGTTATACTACT
gi|9 : ggctataaaagcagagtccccgctttcacttttcacatcgacttcagaccttgacctgagaacatggctcagaaacagctataattcgtggacagggctcagaagaaagtggataacatgatacagaaacagacagggcttcagaaagatgtcttgaaagaagaggacagacaagaggtacaggaggcttacattgcacatcagctgaaaaaggcgaagactgaggagtatctacctacccagaatatgacagacccaggcttaggatttttttcccggacttcccggagtcaccgaatgtaacgggactggaactgggtctctacaacactcagaatgcattggaaaccacagccatgaacaaagaagattttgcgaacatttccaccatgctagacgggatcgttaaccgcattaatgtgctgagtgacgaaattggaaatcataccagaatcctgtaaagaagctggaagagctgacagccaaaaaacccaggaaggaatacgtccccgattacgctactaacccgtgctacacctgtggagcaacaggacattaatcaccggattgcccacagaaaacatattccccgcaaaccagtaagaaatcctggtcgtcagattcccagagtaagaattcacagaagaccaacaagaaaactaaacaaaagaatccttgctacaagtgcggaaaactaggacactggatcagtgactgtccggaagaacaagctgagatagctgcgatgattcctccagtacctggctcaaaaccgcccgtgaagagagagtaacaccgttagagatggggaacccacccgcacctaaacaaaccagtgaaaaaccaccgaaaagaagaagatactcagcaaaaaataaactggactgtgcttagtgaactgtttgtatgcttagtgagcactgtgaactgtttaaaaactgtgcttagtgaaatgtgcattgttcttgtttcaaatgtttatgctttaataaacatgtaaacttaaaaaccttgtgttattatttcacccagcttgtgatttattatggatttcatggatttaatacacaggatttcataggatgttatgcactgcatgttatcgaatttttaacagtgcaacatttgacgtcataatgcacttctccaagtcaaaaccgcttgacgtcacaatggccagtagctcgcgctccacgctgtgctaaaatctgcactctaaactaggctaatacactgcgccctcaacccggccgggctcacagggctataaacccggccgggctcacagggctatacaccggccgtgctattaaccgatcgggctaaccgtcgacccttgctgggtcaaccC--------------------ACTCCG---TTGACCCCA------AGCGTCCTAGATATTGAACCG----------GCCATGGAGGC
1 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|16 ): GATGAAAAATGGAATAAGACAAGTGGGAAGAAGAAGACAGGGAAAAGGGGACGAATGCAACGAGATGTTCTTGAGCGCAATGATAGACAGGAAGGTACAGGAGGCTTACATGGCACAGGCAGCTGAAAAAGGGCAAGAC
Alignments
lowQualScore : 1 1 11 1 11 222222 3333333333333333 1 111 111 222222222 111 11111 1111 333333333333 5555555555555555555555 66666666666666666666 33333333333333333 11111 1111 22222 2222222 111 444444444444 111 3333333333333 111 1 66666666666666666666666666 11 2222222222222 111 33333333333 2222222 5555 5555555555 2222 3333333 2222222222 4444444 3333 222222 2222 444444444444 11 88888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888 22222222222222222 11111 66666666666666666666666666666666666666666 55555555555555 11111 1111111111 222222 88888888888888888888888888888888888888888888888 333 1
lowQualScore : 0 2 0 11 0 8 3 22 66 0 11 8 8 1 0 333333 1 8 8 8888888888888888 0 000 1 11 88 8 1 444 8 4 8 0 1 2 1 333 333333333 6 222 7 3 66666 1 88 4444 6 4 6 444444444444 1 0000000000000000000000 0 22222222222222222222 5 55555555555555555 4 3 1 5 5 5 3 1 5 0 66 5 1 1 5 4 8 4 5 5 0 1 1 5 88888 6 1 888 8 2222 5 88888 0 8 7777777 0 8 444 111111111111 444 77 44 0000000000000 111 4 11111111111111111111111111 7 00 99 1 1 7777777777777 8 3 1 111 00000000000 6666666 6 0000 2222222222 1 999 4 4444 5 7777777 1 8888888888 6 3333333 2 1111 4 6 000000 3 1 1111 4 66 888888888888 777 0 22 0 66666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666 0 777 77777777777777777 00000 888888 4 4 4 77777777777777777777777777777777777777777 9999999 1 5 888 0 88888888888888 0 5 5 22222 5 4444444444 1 111111 11111111111111111111111111111111111111111111111 6 000 7 1 3 6
lowQualScore : . . . .. . . . .. .. . .. . . . . ...... . . . ................ . ... . .. .. . . ... . . . . . . . ... ......... . ... . . ..... . .. .... . . . ............ . ...................... . .................... . ................. . . . . . . . . . . .. . . . . . . . . . . . . . ..... . . ... . .... . ..... . . ....... . . ... ............ ... .. .. ............. ... . .......................... . .. .. . . ............. . . . ... ........... ....... . .... .......... . ... . .... . ....... . .......... . ....... . .... . . ...... . . .... . .. ............ ... . .. . ..................................................................................................... . ... ................. ..... ...... . . . ......................................... ....... . . ... . .............. . . . ..... . .......... . ...... ............................................... . ... . . . .
lowQualScore : 0 5 0 00 8 0 6 22 44 6 00 0 0 4 8 000000 0 0 0 0000000000000000 6 222 0 66 88 0 0 000 0 6 0 8 4 2 0 000 333333333 7 888 2 2 77777 5 88 2222 7 8 7 222222222222 7 7777777777777777777777 7 77777777777777777777 0 99999999999999999 3 0 7 7 7 7 9 7 7 1 99 3 3 4 7 3 6 3 3 7 7 3 7 7 00000 6 0 111 7 1111 7 33333 8 0 0000000 8 8 000 666666666666 000 99 99 9999999999999 777 7 33333333333333333333333333 3 00 22 0 4 6666666666666 8 2 0 777 55555555555 8888888 7 8888 4444444444 0 333 3 3333 7 1111111 9 6666666666 7 2222222 5 0000 0 7 777777 2 0 2222 4 11 000000000000 888 8 22 1 22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222 8 888 99999999999999999 00000 000000 0 0 0 00000000000000000000000000000000000000000 8888888 1 0 888 7 66666666666666 1 0 0 55555 0 1111111111 0 222222 88888888888888888888888888888888888888888888888 7 000 3 0 3 7
consensus : CACCCAGAATCCT-ACAGAC-CCAGGCTTG--GGATTTT-TTTTCCCGGACATCCCGGAGTCACAAGATGT--AACGGGA-CTGGAA-CTGGGCCTCTACAA------CACT-C-AGAATGCATCG-------GAGACCTCCGGCCCTGAACAA-AGAAGATTTTGCGAT-CATTTC---CACC-ACGCTAG-ACGGGATCGTTAACCGCATTAATGTGCTGAGTGACGAGATTGGAAATCATACCACAATCCTACTGAAGAAGCTGGAAGAGCTGACGGNNAAAAANC-------CCAGGAA-GGAATA-CGCTCCAGATTACGCTACTAACCCGTGCTACACTTGT---G-GAGAAACAGGACATTGGTCGCCG----G-ATTGCCCACAGAA-AA------------CAGATTCCC----------------------CGCAGACCAGTAAGAAA------T------CGN----CAGATTCCCA----------NC-----AGACCAGCAAGAAAACCA-AACAAAAGGATCC-TTGCTACAA-GTGCGGAAAACTAGGACACTGGATCA-GTGACTGTCCGGAA--GAACAAGCNGAGATAGATGCGATGATTCC-CCCCGTACCTGGCTCAAAACCGCCCGTGAAGAGAGAGTACAAACCGTTAGAGATGTGGAACCCGC-CCGCACCTAAACAAACCACTGAAGAAC-CGCC--GAAAAAGAAGANGAAACTNAGC-CGAAAGTAA----A-A-----CTGGACTGTGC-TT----G-TGAACTGTTTNTA---TGCTTACT---C------AA---CTGTT--TNAAAACTGT-TTTA--AAAA-ACTG---TGCATTG--T-TC--------------TA----TGCTTTAATAAACATGTAAACTT--AAACCCTGNGCTATTCTTT-ACCAANCTTG-GATTTTATGCACTGGATTT---CA-----TGCACTGGATTT--A-GCGAT-ACACAGGAA-TACACAGGATTTTA----C-----TGGATTTTATGCCTTGGAT----CGATA-CACATTCC-------TAAAAGTGCTACATTT------TTT-TTGACGTCA-TAATGC------ACTTCTCCAAGTCCAGACCGANTGACGTCACAA-TAGCCAGT-AGCTCGCGCTC----CTGTGCTA-A--AAC-----C-T----CT---CTAAACTA--GGC---------------CA-AC--GGCAATAC----ACT---CT-A----------GGC----CGGC-CTATA-AAC-C------GG----G----C------TATAA---ACCCGGCC------G---T------GCTA-----T--A---A-A-CC-GGC------------C-------TAG-----------------CGACCCCTGCTGGGGTC-AAACCGCTTGA-CC---AATCAGCA--------------TTGACCTCATTTG-CA-TAAAAA-----GTGCACTC-AGTTG---AAC--CCCCTATGGA------GGC--------GC-TTG-ACC--------------------ACTCCG---TTGACCCAGCC-AATCAGCGTCCTAGATATTGAACTCCCCAT-GGAGGCCGGTTATACTACT
Reference ( family-1393 ) : CACCCAGAATCCT-ACAGAC-CCAGGCTTG--GGATTTT-TTTTCCCGGACATCCCGGAGTCACAGGATGT--AACGGGA-CTGGAA-CTGGGCCTCTACAA------CNCT-C-AGAATGCATCG-------GAAACCTCCGGNCCNGAACAA-AGAAGATTTTGCGAT-CATTNC---CACC-ACGCTAG-ACGGGATCGTTAACCGCATTAATGTGCTGAGTGACGAAATTGGAAATCATACCANAATCCTGCTGAAGAAGCTGGAAGAGCTGACGNNNAAAAANC-------CCAGGAA-GGAATA-CGCTCCAGATTACGCTACTAACCCGTGCTACACTTGT---G-GAGAAACAGGACATTGGTCGCCG----G-ATTGCCCGCAGAA-AA------------CAGATTCCC----------------------CGCAGACCAGTAAGAAA------T------TGG----CAGATTCCCA----------NC-----AGACCAGCAAGAAAACCA-AACAAAAGGATCC-TTGCTACAA-GTGCGGAAAACTAGGACACTGGATCA-GTGACTGTCCGGAA--GAACAAGCCGAGATAGATGCGATGATTCC-CCCCGTACCTGGCTCAAAACCNCCCGTGAAGAGAGAGTACAAACCGTTAGAGATGTGGAACCCGC-CCGCACCTAAACAAACCACTGAAGAAC-CGCC--G-AAAAGAAGANGAAACTNAGC-CGAAAGTAA----A-A-----CTGGACTGTGC-TT----G-TGAACTGTTTNTA---TGCTTANT---C------AA---CTGTT--TNAAAACTGT-TTTA--AAAA-GCTG---TGCGTTG--T-TC--------------TA----TGCTTTAATAAACATGTAAACTT--AAACCCTGNGCTATTCTT--ACCAATCTTG-GATNTTATGCACNGGATTT---CA-----TGCACTGGATTT--A-GCGAT-ACACAGGA--T-CACAGGATTTTA----C-----TGGANTTTATGCCTTGGAT----CGATA-CACATTCC-------TAAAAGTGCTACATTT------TTT-TTGACGTCA-TAATGC------ACTTCTCCAAGTCCCGACCGAATGACGTCACAA-TAGCCAGT-AGCTCGCGCTC----CTGTGCTA-A--AAC-----C-T----CT---CTAAACTA--GGC---------------CA-AC--GNCAATAC----ACT---CT-A----------GGC----CGGC-CTATA-AAC-C------GG----G----C------TATAA---ACCCGGCC------G---T------GCTA-----T--A---A-A-CC-GGC------------C-------TAG-----------------CGACCCCTGCTGGGGTC-AAACCGCTTGA-CC---AATCAGCA--------------TTGACCTCATTTG-CA-TAAAAA-----GTGCACTC-AGTTG---ANC--CCCCNATGGA------GGC--------GC-TTG-ACC--------------------ACTCCG---TTGACCCAG-C-AATCAGCGTCCTAGATATTGAACTCNCCAT-GGAGGCCGGTTATACTACT
gi|1 : ACCCAGAATATG-ACAGAC-CCAGGCTTA--GGATTTT-TTT-CCCGGACTTCCCGGAGTCACCGAATGT--AACGGGA-CTGGAA-CTGGGTCTCTACAA------CACT-C-AGAATGCATTG-------GAAACC-ACAGCCATGAACAA-AGAAGATTTTGCGAA-CATTTC---CACC-ATGCTAG-ACGGGATCGTTAACCGCATTAATGTGCTGAGTGACGAAATTGGAAATCATACCAGAATCCTG-TAAAGAAGCTGGAAGAGCTGACAGCCAAAAAAC-------CCAGGAA-GGAATA-CGTCCCCGATTACGCTACTAACCCGTGCTACACCTGT---G-GAGCAACAGGACATTAATCACCG----G-ATTGCCCACAGAA-AA------------CATATTCCC----------------------CGCAAACCAGTAAGAAA------TCC----TGGTCGTCAGATTCCCAGAGTAAGAATTCACAGAAGACCAACAAGAAAACTA-AACAAAAGAATCC-TTGCTACAA-GTGCGGAAAACTAGGACACTGGATCA-GTGACTGTCCGGAA--GAACAAGCTGAGATAGCTGCGATGATTCC-TCCAGTACCTGGCTCAAAACCGCCCGTGAAGAGAGAGTA-ACACCGTTAGAGATGGGGAACCCAC-CCGCACCTAAACAAACCAGTGAAAAAC-CACC--G-AAAAGAAGAAGATACTCAGC-AAAAAAT-A----A-A-----CTGGACTGTGC-TTA---G-TGAACTGTTTGTA---TGCTTAGTGAGCACTGTGAA---CTGTT--TAAAAACTGTGCTTAGTGAAA---TG---TGCATTG--T-TCTTGTTTCAAATGTTTA----TGCTTTAATAAACATGTAAACTTAAAAACCTTGTGTTATTATTTCACCCAGCTTGTGAT-TTAT-TA-TGGATTT---CA----------TGGATTT--A----AT-ACACAGGATTT-CATAGGATGTTA----------TGCACTGCATG--TT--AT----CGA------ATTTT-------TAACAGTGCAACA-----------T-TTGACGTCA-TAATGC------ACTTCTCCAAGTCAAAACCGCTTGACGTCACAA-TGGCCAGT-AGCTCGCGCTCCACGCTGTGCTA-A--AAT-----C-TGCA-CT---CTAAACTA--GGC---------------TA-AT---ACACTGC----GCC---CTCAACCC------GGC----CGGG-CT----CAC-A------GG----G----C------TATAA---ACCCGGCC------GGGCTCACAGGGCTA-----T--A---C-A-CC-GGC------------CGTGCTATTAACCGATCGGGCTAACCGTCGACCCTTGCT-GGGTC-AACCCGCTTGA-CC---AATCAGAA--------------TTGACATCATTTG-CA-TAAAAA-----TTGCACTC--GTTGA--AAC--CACCCATGGA------GGC--------GCGTTATACT--------------------ACT
gi|10 : ggctataaaagcagagtccccgctttcacttttcacatcgacttcagaccttgacctgagaacatggctcagaaacagctataattcgtggacagggctcagaagaaagtggataacatgatacagaaacagacagggcttcagaaagatgtcttgaaagaagaggacagacaagaggtacaggaggcttacattgcacatcagctgaaaaaggcgaagactgaggagtatctacctCCC----------------------CGCAGACCAGTAAGAAA------TCCCGGTTGT----CAGATTCCCA----------GC-----AGACCAGCAAGAAA-CCA-AAGAAAAGGATCC-TTGCTACAA-GTGCGGAAA-CTAGGACACTGGATCA-GTAACTGTCCGGAA--GAACAAGCCGAGATAGATGCGATGAT-CC-CCCCGTACCTGGCTCAAAACCGCCCATCAAGAGATAGTACAAACCGTTAGAGATGTGGAACCCGC-CCACACCTAAACAACCTACTGAAAAAC-CGCA--GAAAAAGAAGATGAGCTTTAGC-C--AAGTTA----A-A-----
gi|11 : aaatcatccGAA--GAACAAGCTGAGATAGAAGCAATGATGTC-CCC-------GGTTC-------CCTGC-AAGAGAGGGTACAAACCTTGAGAGATGTGGAAACCTC-CAGCGCCTAAA-AGACCACTGAAGAAC-CGCA--GAAAAAGAAGAGGAAACTAAGT-AGAAATTAATGTTA-AACT--CTGGAC---GG-TT----A-TAAACTG--TGAA---CTCTTA-----C------AAAAGCTGT------AAACTGT-T-----ATAA-GCTG---TGAACTG--TGTT--------------TATGGGTGGTTTAAAAAAAATGAAGATTT--tgcttga
gi|12 : GGAACCATACAAGAATCCTACTCAAGAAGCTGGGAGAGCTGAAGTAGAAAAACC-------CCATGAATGAAATA----TCC----------ACTAACCTCTGCTGCACTTGT-------AAAACA-------------------G-ATTGCCCACAAAA-AA------------C----------------------------------------CAAGAAAAC----C------TGGTCTCTAAATTCTTC----------GC-----AGAAAACCAAGAAAACTAGAAC-GAAGGACCC-TTGCTACAA-GTGCGGTAAACTTGGACATTGGATCA-ACAATTGTCCGGAA--GAACAAGC
gi|13 : A-TAATGCTTTTTCACTTCTCCAAGTCCAG-CCGAATGACGTCACAA-TAGCCAGT-AGCTCGCGCTT----CTGTGCTA-A--AAC-----C-TTGCACT---CTAAACTA--GGC---------------TA-A------AACAC----TCTCAACT-A----------GGC----CAGC-CTATA-AAC-C------AG----G----G------TATAC---ACCAGCCC------G---T------GCTC-----T--A---A-A-CC-GGG------------C-------TAG------------------GACCCCTGCTGAGGTC-AAACCGCT
gi|14 : actgcttgttatagcatagaggaacattggatgagcaaatT--TCAAACCTGT-GTTC--AA----CTG---TGC-TTA--A-AC--------------TC----TGCTTTAATA--CAT--AAGCTT--AAACCCTGAGCTATTCTT--ACCAATCTTG-GATTTTATGCACTGGAATT---TAT----TGC-TTGGATTT--A-GCGAT-ACACA
gi|14 : tccGGATTTTATGCAC-----TGGAATTTATTGCTTGGATTTAGCGATA-CACATTCCGAGACTTTAAAAGTGCTACATTttccgagactttaaaagtgctacatt
gi|15 : tccttcaaacctgtgttcaactgtgcttaaactctgctttaatacataagcttaaaccctgagctattcttaccaatcttT--TCAAACCTGT-GTTC--AA----CTG---TGC-TTAAAT-GC--------------TG----TGCTT-AATA--CAT--AAGCTT--AAACCCTGAGCTATTCTT--ACCAATCTTG-GATTTTATGCACTGGAATT---TA-----TGCCTTGGATTT--A-GCGAT-ACACA
gi|15 : ccGGATTTTATGCAC-----TGGAATTTATGCCTTGGATTTAGCGATA-CACATTCCGAGACTTTAAAAGTGCTACATTttccgagactttaaaagtgctacatt
gi|17 : ccttcaaacctgtgttcaactgtgcttaaatgctgtgcttaatacataagcttaaaccctgagctattcttaccaatcttCCAACC------G---C------ACTA-----T--GTTGA-A-CC-AGC------------C--------AT-----------------CTACCCCACCT---------ACC-CTCGA-CC---AATCAGAA--------------ATGACCTCAC--------AAAAA-----GTGCACTT-AGTTA---AAC--CAGCCATAGA------GGC--------AC-CT
gi|18 : acctCACTTT-CACTCAAAA-----GTGCACTC-AGTTG---ACC--TCCCATTGGG------GGtatacta
gi|2 : CACTCAGAATCCT-ACA-AC-CCAGGCTTG--GG-TTTT-TTTTCCCGGAGATTC-AGAGGCACAAGATGT--CACGGGA-CTGGAA-CTGGGCCTCT-CAA------CCCT-CCAGAATGAGCC------------CTTCCGG-CCAGA-CAA--GAAGACTTTGCGATTCATTAC---CACCGACATAAG-ACGGGATTGTTA--CGCATTAATGTGCTGCGTAATGAGATTGGAAATCATACCACCGTCCTGCTGAAGAAGCTGGAAGACCTGACGGGGAAAAATCTAGATCCCTAGGAA-GAACTATCACTCCAGATTCGGCTA-TAACCCGTGCTCAACTTGTTGCGTGTGAAACAGGGCATTGGTCGCCG----GTATTGCCCCCAGAATAG------------CAGATTTCCCGCAACCAGTAAGAAAGATTTTCGCAGAC-AGTAAGAAA------T------CGC----C-GAT---AA----------CC-----AGA---GAAAGAAAAC-A-AACAACGGGATCCCTTGC-ACAAAGTGCGGGAAATT-GGACACTGGATCAAGTGACTGTCCGGAAAAGAA-AAGCGGAG-TCGATGAGATGATTGGGCCCCGTAACTGGCTCAAAACC-CGCTTGAAGAGAGAGTACAAACCGCTAGAGA-GT----CCCCT-CCGCACT----------ACTGAAGAAC--GCCTTA-AAAAGAAGA-GCAACTGAGCACGAA-GTAA----A-AAAAACTTGAACTGTTT-TTTTATGCTGAACTGTTT-TACATTGATAACT---G------AA---CTGTT--TTTATGCTGT-TT-A--ATAA-ACTGGTTTGAGTTG--T-T----------------------GCTTTAATAAACATGTAAACTT--AAAACCTGGTGTAGTCTTT-ATTATGCT---GAGCGAATACACAG-ATTTAAACAAGGAATAGACTGGATTTTTATGCGATGATACAGGAA-TACACAGGAAC--A----C-----TGGATTTTATGC----GAT----CGATAACACATTCC-------TAAGTGTGATACATTT------AT----GACGTCAATAATGT--------CTCTCAAGGT-----CCGATT--TTTCAGAAATAGC-ATTCAGC-----CTT----TTTCACGA-ATCAAG-----C-------------GAAGTA--GAT---------------CC-AC--GGCAATAT----A--------------------GC----CAAC-TTATATAAC-C------GC---------C------TCTAA---ACC-AGCC------G---T------GCTA-----T--A---ATA-CC-GGTACTCTAAACCGGC-------TAG------------------GACCCCTGCTGGGGTC-AAAC----TGA-CC---
gi|2 : ttttcacattttacacctgcaaccagagaacatggctctagatgaacaggctagaattcgtggacagagtcagaagaagtgaataacatggtacgaaaaagacgggaatgcaacaggagatttcttggcgaagcaaacagttagacagggtacatgagcttacattggcacagcagctgataaaaggcaaggactgaggatttctaatacgctTA-T--AAC-----CGC----CT---CTAAACCA--G-C---------------CGTGC--TATAATACCGGTACT---CT-A----------AAC----CGGC--TAGG-ACC-CCTGCTGGG----G----T------CA-AACTGACCCGTCT------A---T------GCTA-----TTTG---A-A-CC-G-C------------C-------CAT-----------------CGAGCCCTG---------AAAACGCTTGAACCTCAAGTCAGCAAGAACCGCATCTGCTTGACCTCATTTGTCA-TAAAAACAACGGTGCACTCAAGTTGTGAAACCTCCCCTATGGA------GGcgtctatgctatttgaaccgcccatcgagccctgaaaacgcttgaacctcaagtcagcaagaaccgcatctgcttgacctcatttgtcataaaaacaacggtgcactcaagttgtgaaacctcccctatggagggcggaggctactaa
gi|3 : ttttcacattttacacctgcaaccagagaacatggctctagatgaacaggctagaattcgtggacagagtcagaagaagtgaataacatggtacgaaaaagacgggaatgcaacaggagatttcttggcgaagcaaacagttagacagggtacatgagcttacattggcacagcagctgataaaaggcaaggactgaggatttctaatacgctcactcagaatcctacaacccaggcttgggttttttttcccggagattcagaggcacaagatgtcacgggactggaactgggcctctcaaccctccagaatgagcccttccggccagacaagaagactttgcgattcattaccaccgacataagacgggattgttacgcattaatgtgctgcgtaatgagattggaaatcataccaccgtcctgctgaagaagctggaagacctgacggggaaaaatctagatccctaggaagaactatcactccagattcggctataacccgtgctcaacttgttgcgtgtgaaacagggcattggtcgccggtattgcccccagaatagcagatttcccgcaaccagtaagaaagattttcgcagacagtaagaaatcgccgataaccagagaaagaaaacaaacaacgggatcccttgcacaaagtgcgggaaattggacactggatcaagtgactgtccggaaaagaaaagcggagtcgatgagatgattgggccccgtaactggctcaaaacccgcttgaagagagagtacaaaccgctagagagtcccctccgcactactgaagaacgccttaaaaagaagagcaactgagcacgaagtaaaaaaaacttgaactgtttttttatgctgaactgttttacattgataactgaactgtttttatgctgtttaataaactggtttgagttgttgctttaataaacatgtaaacttaaaacctggtgtagtctttattatgctgagcgaatacacagatttaaacaaggaatagactggatttttatgcgatgatacaggaatacacaggaacactggattttatgcgatcgataacacattcctaagtgtgatacatttatgacgtcaataatgtctctcaaggtccgatttttcagaaatagcattcagcctttttcacgaatcaagcgaagtagatccacggcaatatagccaacttaCACTCAGAATCCT-ACAGAC-CCAGGCTTG--GGATGTT-TTCCCCCGGAGATTCCAGAGTCACAAGATGT--AACAGGG-CTGGAA-CTGGGGCTCTACAA------CCCT-C-AGAATG--------------AACCTCCGAACCTGAACAA-AGAAGATTTTGCGAT-CATTAC---CACG-ACACTAG-ACGGGATCGTTAACCGCATTAATGTGCTGAGTAATGAGATTGGAAATCATACCACAGTCCTACTGAAGAAGCTGGAAGAGCTGACGGGTAAAAAGC-------CTAGGAA-GGAATA-CACCTCAGATTACGCTACTAAACCGTGTTACACTTGT---G-GACAAACAGGACATTATTCGCCG----G-ATTGCCCACAGAA-AA------------CAGATTATC----------------------CGCAGACCAGTAAGAAA------T------TGG----CAGATTCCCA----------CC-----AGACTAGCAAGAAAACCA-AACAAAGGGATCC-TTGCTACAA-GTGCGGAAAATTAGGACACTGGATCA-GTGAACGTCCTGAA--GAACAAGCGGAGATAGCCGAGATGATTGG-TCCCGTACCTGGCTCAAAACCCACTGTGAAGAGAGAGTACAAACCGTTAGAGATGTGGAATCCGC-CCGTACCTAAACAAACCAGTGAAGAAC-TACC--G-AAAAGAAGAAGAAACTTAGC-CGAAAGTAA----ATA-----CGGGACTGTGC-TT----G---AACTGTTTTTA---TGCTTATT---C------AA---CTATT--TAAAAACTGT-TTTA--AAAACATTG---TGCATTG--T-TC--------------TA----TGCTTTAATAAACATGTAAACTT--AAACCTTGTGTTATTCTT---------------TATTATGCACAGGATTT---CA-----TACACAGGATTT--A----AT-ACACAGGAA-TACATAGGATTTTA----C-----TGGATTTTATCCCTTGGAT----CGATA-CACATTCC-------TAAGTGTGCTACATTT------TTT-TTGACGTCA-TAATGC---------TCTCCAAGTCCCAACCGAATGACGTCATAA-TAA--A----------GCTC----CTGTGCTA-A--AAC------------CT---CTAAACTA--GGC---------------CA-GC--GGCAATAC----ACT---CT-A----------GGC----CGAC-CTATA-AAC-C------GG----G----C------TGTAA---ACCCGGCC------A---T------GCTA-----T--A---A-A-CA-GGC------------C-------TAG------------------GACCCCTGCTGGGGTC-AAATCGCTTGA-CC---AATCAGCA--------------TTGACCTCATTTG-CA-TAAAAA-----GTGCACTC-AGTTG---ACC--TCCCTATGGA------GGC--------GC-TTG-ACC--------------------ACTCCG---TTGACCCCGCC-AATCAGCGTCCTAGATATTGAACTCCCTAT-CGAAGCGGGTTATACTACTgcggaggctactaa
gi|4 : GGCTTG--GGATTAT-TTT-CCCGAACATCCCGGAGTCACAAGATGT--AACGGGA-CTGGAA-CTGGGCCTCTACAA------CACT-C-AGAATGTATCG-------GAGACC-CCGGTCATGAACAA-AGAAGATTTTGCGAT-CATTTC---CACT-ACACTAG-ACGGGATCGTTAACCGCATTAATGTGCTGAGTGACGAAATTGGAAATCATACCACAATCCTACTGAAGAAGCTGGAAGAGCTGACGCCTAAAAACC-------CCAGGAA-GGAATA-CGTTCCCAATTACGCTACTAACCCGTGCTACACTTGT---G-GAGAAACAGGACATTGGTCGCCG----G-ATTGCCCACAGAA-AA------------CAGATTTCC----------------------CGCAGACCAGTAAGAAA------T------C------CAGAT----------------------AAAACA-----AAAACCA-AACAAAAGGATCC-TTGCTACAA-GTGCGGAAAATTAGGACACTGGATCA-GTGACTGTCCAAAA--GAACAAGCGGAGATAGCTGCGATGATTCC-TCCAGTACCTGACTCAAAACCCCCTGTGA--AGAGAGTACAAACAGTTAGAGATGTGGAATCCGC-CCGCACCTAAACAAACCACTGAAGAAC-CACC--G-AAA--AAGAAGAAACTCAGC-AAAAAGT-A----A-A-----CTGGACTGTGCTTT----G-TGAACTGTTTTTA---TGCTTACT---G------AA---CTGTTACTGTGAACTG--TTTA--AAac
gi|5 : GGGTTTTA----TGCAG-CGGATTTTATGCCTTGGAT----CGATA-CACATTCC-------TACACGTACTACATTT------TTT-TTTACGTCA-TAATGC------ACTTCTCCAAGGCTAG-CCGAATGACGTCACAA-TAG------AGCTCGCGCTC----CTGTGCTA-A--AACCTGCAC-T----CTAAACTAGGCCAACGGCAATTTGATACACTCTCA-ACTAGGCCATAC----GCT---CT-AAACCCGGCCGGGCTCACCGGC-CTCTA-AACTC------GGCCATG----C------TATAA---TCCCGACC------G---G------GCTA-----T--A---A-A-CCCGGC------------CGGAC---TAG------------------GACCCCTGCTGTGGTC-AAACCTCTTGA-CC---AATCAGCA--------------TTGACCTCATTTG-CA-TAAAAA-----GTGCACTC-AGTTG---AAC--TCGCTATGGAAACCGGGGCCAGGTCAAGC-TTG-ACCCCCACTGCGCATGTGCGATGACCCCGCCATTGACCCAGCC-AATCAGCGTCCTAGATATTGAACTCGCCAT-GGAGGCCGGTTATACTACT
gi|6 : CCAGAATCCTTACAGACTCCAGGCTTCATGGATTTTATTTTTCCTGACA---------CACAGGATGGCAAACCGGATCTGGAAACTAGGTCTCTATAATCTCCTCACTAC-AGAATGCATCGCGAACTAGAGCCCTCC--CACTG-ACAAGATAACATTTC-CGCT--ATTTCACATACC-ACTCTAGAACAAGATAGTAAACAAGATTAATGGACTGGTCGAGGATATTGGTAAtccgt
gi|7 : gctataaaaatcaggccagatgtcctacacttcaatccgacttcagacagtgagcagacaacataggcacagaaacgggctagattttgtgcgacagaagttcagaagaaagtcaatagatagtacacacttcagtatcagttgggtcccagaaatatttacttgagtgaaagaggacagatatgagccttacatgctggcacatccagctaaaaaaggcgcaggaacaagccaatggttatatagGAAAAAGATGGAAGAGCTGACAGCGAAAAA--------------------------CTCCAGA-TACGCCACT-ACCCGAGCTACACTTGT---G-GAGAAATAGGCCATT-GTCACCGGATTG-ATTGCCTGCAGAA-AACTAAGAAAACCTCAGATTCCC----------------------CGCAGACCAGTAAGAAATCCCGGT------TGT----CAGATTCCCA----------GC-----AGACCAGCAAGAAAACCA-AAGAAAA--ATCC-TTGCTACAA-GTGCGG-AAACTAGGACACTGGATCA-GTAAC-GTCCGGAA--GAACAAGCCGAGATAGATGCGATGA-TCC-CCCCGTACCTGGCTCAAAACCGCCCATCAAGAGATAGTACAAACCGTTAGAGATGTGGAA-CCGCGCCACACCTAAACAACCTACTGAA-AACACGCA--GAAAAAAAAGATGAAGCTTAGC-CGAAAGTAA----A-
gi|8 : GGATTT---CA-----TGCAC-GGTTTT--A----AT-AC------------CAGGATTTTA----TACCGTTGGATTTTA-------G------TGATA-CACATTCC-------TAAAAGTGCTA-ATTTAAGGAATTTGTTGACGTCA--AATACTTTTC-ACTTCTC---GTCC--ACCGCTTGATG-CACAA-TAGCCAGT-AGCTCGTGCTCCAAACTGTGCTA-A--AAC-----C-TGCCACT---C-AAACTA--GGC---------------TA-A---ATCAATGC----ACT--------------------------GCGCTCTC-AAC-T------AG----GCAGCC------TAT-A---ACCCGG-------------------GCTA-----T--A---A-A-CC-GGG------------C-------TGG-----------------CGA-CCCTGCTGGGATCAAAACAGCTTGA-C-----ACCTAC---------------TTGACCCC-----------------------CACTG-ACATG---------TCCGAT---------GAC--------GC-C---ATC--------------------A--------TTGA-CCAG-CAAACCAGCGTCCTAGATATTGAAA-CCCCATCGGAGG-CGTTTATACTACTtgc
gi|9 : gtaCTC----CTGTGCTA-A--AAC-----C-TGCA-CT---CTAAACTATAGGC---------------CA-A---GTCAAAAC----ACTGCGCT-ATCAACCC---GGC----CGGG-CTC----AC-C------GG----G----T------TATAA---ACCCGGCCTCACCAG----------GCTA-----T--A---A-ATCC-GGT------------C-------TAG-----------------ca
gi|9 : ----CTGTGCTATA--AAC-----C-C----GG---CCGGGCTA--GCC---------------CG-GC--GAC----------CC---CT-ACT--------GG------GGT-C---A-AAC-T------GC----G----CACTCCGT-TGA---CCCCAAGC------G---T------CCTAGATATT--G---A-A-CC-GGC------------CA------TGG-----------------AGGCCC--------G---AAACCGCTTGA-CC---AATCAGAAGTCTCCCTGC----TTTACCTTATTTG-CA-TAAAAA-----GTGCACTC-AGTTG---AAC--CGCCTATGTATT----GGC--------GT-TAT-ACC--------------------Aatataaaccaggccgggctagcccagcctctaaacccggctgtgctataaacccggccgggctagcccggcgacccctactggggtcaaactgcgcactccgttgaccccaagcgtcctagatattgaaccggccatggaggcccgaaaccgcttgaccaatcagaagtctccctgctttaccttatttgcataaaaagtgcactcagttgaaccgcctatgtattggcgttatacca
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|16 ): GATGAAAAATGGAATAAGACAAGTGGGAAGAAGAAGACAGGGAAAAGGGGACGAATGCAACGAGATGTTCTTGAGCGCAATGATAGACAGGAAGGTACAGGAGGCTTACATGGCACAGGCAGCTGAAAAAGGGCAAGAC
Alignments
lowQualScore : 1 1 11 1 11 222222 444444444444 11 1 111 22222222 111 111 111111 333333333333 6666666666666666666666666666666666666666666666666 1111 22222 33333333 111 333333333333 11 11111 111 66666666666666666666666666 11 2222222222222222 22222222222222222 2222 5555555555 2222 3333333 222222222 3333333 1111 1 222222 111111111 999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999 22222222222222222 666666666666666666666666666666666666666666666 55555555555555 11111 111 5555555555555555555555555555555555555555555555555555555 3333333 1
lowQualScore : 0 2 0 11 0 8 3 22 66 0 11 8 8 1 0 333333 0 8 8 333333333333 0 88 3 0 0 88 8 1 444 8 4 8 0 1 1 22 99999999 6 222 1 3 6 111 1 88 555555 6 444444444444 99 1 1 1111111111111111111111111111111111111111111111111 77 3 5 2 5 5 3 1 5 0 66 1 1 77 0 4 0 1 0 5 5 0 0 1 5 66 5 8 1 9999 8 2222 5 88888 0 8 22222222 0 8 444 666666666666 8 77 44 00 1 99999 111 9 55555555555555555555555555 7 00 99 1 1 2222222222222222 3 6 88888888888888888 99 6666 6 3 2222222222 0 999 4 4444 5 7777777 1 666666666 8 6 9999999 5 1 7777 1 1 0 1 111111 8 3 555555555 8 55 999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999 2 7777 33333333333333333 99999 666666 3 7 3 999999999999999999999999999999999999999999999 1 66 0 2 0 4 777 11111111111111 8888888 11111 4 777 222 66 2 5555555555555555555555555555555555555555555555555555555 7777777 6 7 3 6
lowQualScore : . . . .. . . . .. .. . .. . . . . ...... . . . ............ . .. . . . .. . . ... . . . . . . .. ........ . ... . . . ... . .. ...... . ............ .. . . ................................................. .. . . . . . . . . . .. . . .. . . . . . . . . . . . .. . . . .... . .... . ..... . . ........ . . ... ............ . .. .. .. . ..... ... . .......................... . .. .. . . ................ . . ................. .. .... . . .......... . ... . .... . ....... . ......... . . ....... . . .... . . . . ...... . . ......... . .. .................................................................................................................................... . .... ................. ..... ...... . . . ............................................. . .. . . . . ... .............. ....... ..... . ... ... .. . ....................................................... ....... . . . .
lowQualScore : 0 5 0 00 8 0 6 22 44 6 00 0 0 4 8 000000 6 0 0 666666666666 6 66 2 0 8 88 0 4 000 0 6 0 8 4 4 00 22222222 7 888 0 2 7 777 5 88 000000 7 222222222222 22 7 7 7777777777777777777777777777777777777777777777777 99 0 7 3 7 7 9 7 7 1 99 0 3 11 7 3 7 7 7 3 7 1 7 7 7 44 0 6 0 6666 7 1111 7 33333 8 0 00000000 8 8 000 444444444444 0 99 99 77 3 11111 777 8 33333333333333333333333333 3 00 22 0 4 0000000000000000 2 0 55555555555555555 22 7777 7 2 4444444444 6 333 3 3333 7 1111111 9 555555555 0 7 0000000 7 4 0000 0 4 1 4 333333 4 0 111111111 0 55 777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777 2 9999 66666666666666666 11111 555555 6 3 6 444444444444444444444444444444444444444444444 6 66 7 5 7 4 888 22222222222222 1111111 11111 4 888 222 11 9 4444444444444444444444444444444444444444444444444444444 7777777 7 3 3 7
consensus : CACCCAGAATCCT-ACAGAC-CCAGGCTTG--GGATTTT-TTTTCCCGGACATCCCGGAGTCACAAGATGT--AACGGGA-CTGGAA-CTGGGCCTCTACAA------CACT-C-AGAATGCATCG-------GAGACCT-CCGGCCNTGAACAA-AGAAGATTTTGCGAT-CATTTC---CACC-ACGCTAGA-CGGGATCGTTAACCGCATTAATGTGCTGAGTGACGAGATTGGAAATCATACCACAATCCTACTGAAGAAGCTGGAAGAGCTGACGGNNAAAAA-------CCCCAGGAA-GGAATA-CGCTCCAGATTACGCTACTAACCCGTGCTACACTTG-TG---GAGAAACAGGACATTGGTCGCCG----G-ATTGCCCACAGAA-AA------------C--AGATTCCCCGCAGACCAGTAAGAAA------TC-C----GNCAG------ATTCCCA----------GC-----AGACC--AGCAAGAAAACCA-AACAAAAGGAT-CCTTGCTAC-AAGTGCGGAAAACTAGGACACTGGATC-AGTGACTGTCCGG--AAGAACAAGCNGAGATAGATGCGATGATT-CCCCCCGTACCTGGCTCAAAACCGCCCGTGAAGAGAGAGTACAAACCGTTAGAGATGTGGAACCCGC-CCGCACCTAAACAAACCACTGAAGAAC-CGCC-GAAAAAGAAGANGAAACTNAGC-CGAAAGTAA----A-A-----CTGGACTGTGC-T----T-G-TGAACTGTTTNTA---TGCTTA-----C----TGAA-CTGTT--TNAAAACTGT-TTTAANAA-ACTG---TGCATTG--T-TC--------------TA----TGCTTTAATAAACATGTAAACTT--AAACCCTGNGCTATTCTTT-ACCAANCTTG-GATTTTATGCACTGGATTT---C-----A-TGCACTGGA--TTTA-GCGAT-ACACAGGAATACACAGGATTTTA----C-----TGGATTTTATGCCTTGGAT----CGAT-ACACATTCC-------TAAAAGTGCTACATTT------TTT-TTGACGTC-ATAATGC------ACTTCTC-CAAGTCCAGACCGANTGACGTCA-CAATAGCCAGT-AGCTCGCGCTC----C----TGTGCTA-A--AACC-----CG---CT---CTAAACTA--GGC---------------CA---A--C--GGC---AATAC----ACT---CT-A----------GGC----CGGC-CTATA-AAC-C------GG----GC------TATAA---ACCCGGCC------G---T------GCTA-----T--A---A-A-CC-GG---C----C-------TA-----G-----------------C---GACCCCTGCTGGGGTCAAACCGCTTGA-CC---AATCAGCA--------------TTGACCTCATTTG-CA-TAAAAA-----GTGCACTC-AG---TTG---AAC--CNCCCATGGA------GG--------C--------GC-TTG-ACC--------------------ACTCCG---T---TGACCCAGCCAATCAGCGTCCTAGATATTGAACTCCCCAT-GGAGGCCGGTTATACTACT
Reference ( family-1393 ) : CACCCAGAATCCT-ACAGAC-CCAGGCTTG--GGATTTT-TTTTCCCGGACATCCCGGAGTCACAAGATGT--AACGGGA-CTGGAA-CTGGGCCTCTACAA------CACT-C-AGAATGCATCG-------GAGACCT-CCGGCCCTGAACAA-AGAAGATTTTGCGAT-CATTTC---CACC-ACGCTAGA-CGGGATCGTTAACCGCATTAATGTGCTGAGTGACGAGATTGGAAATCATACCACAATCCTACTGAAGAAGCTGGAAGAGCTGACGGNNAAAAA-------NCCCAGGAA-GGAATA-CGCTCCAGATTACGCTACTAACCCGTGCTACACTTG-TG---GAGAAACAGGACATTGGTCGCCG----G-ATTGCCCACAGAA-AA------------C--AGATTCCCCGCAGACCAGTAAGAAA------TC------GNCAG------ATTCCCA----------NC-----AGACC--AGCAAGAAAACCA-AACAAAAGGAT-CCTTGCTAC-AAGTGCGGAAAACTAGGACACTGGATC-AGTGACTGTCCGG--AAGAACAAGCNGAGATAGATGCGATGATT-CCCCCCGTACCTGGCTCAAAACCGCCCGTGAAGAGAGAGTACAAACCGTTAGAGATGTGGAACCCGC-CCGCACCTAAACAAACCACTGAAGAAC-CGCC-GAAAAAGAAGANGAAACTNAGC-CGAAAGTAA----A-A-----CTGGACTGTGC-T----T-G-TGAACTGTTTNTA---TGCTTA-----C----TCAA-CTGTT--TNAAAACTGT-TTTAAAAA-ACTG---TGCATTG--T-TC--------------TA----TGCTTTAATAAACATGTAAACTT--AAACCCTGNGCTATTCTTT-ACCAANCTTG-GATTTTATGCACTGGATTT---C-----A-TGCACTGGA--TTTA-GCGAT-ACACAGGAATACACAGGATTTTA----C-----TGGATTTTATGCCTTGGAT----CGAT-ACACATTCC-------TAAAAGTGCTACATTT------TTT-TTGACGTC-ATAATGC------ACTTCTC-CAAGTCCAGACCGANTGACGTCA-CAATAGCCAGT-AGCTCGCGCTC----C----TGTGCTA-A--AACC-----T----CT---CTAAACTA--GGC---------------CA---A--C--GGC---AATAC----ACT---CT-A----------GGC----CGGC-CTATA-AAC-C------GG----GC------TATAA---ACCCGGCC------G---T------GCTA-----T--A---A-A-CC-GG---C----C-------TA-----G-----------------C---GACCCCTGCTGGGGTCAAACCGCTTGA-CC---AATCAGCA--------------TTGACCTCATTTG-CA-TAAAAA-----GTGCACTC-AG---TTG---AAC--CCCCTATGGA------GG--------C--------GC-TTG-ACC--------------------ACTCCG---T---TGACCCAGCCAATCAGCGTCCTAGATATTGAACTCCCCAT-GGAGGCCGGTTATACTACT
gi|1 : ACCCAGAATATG-ACAGAC-CCAGGCTTA--GGATTTT-TTT-CCCGGACTTCCCGGAGTCACCGAATGT--AACGGGA-CTGGAA-CTGGGTCTCTACAA------CACT-C-AGAATGCATTG-------GAAACC--ACAGCCATGAACAA-AGAAGATTTTGCGAA-CATTTC---CACC-ATGCTAGA-CGGGATCGTTAACCGCATTAATGTGCTGAGTGACGAAATTGGAAATCATACCAGAATCCTG-TAAAGAAGCTGGAAGAGCTGACAGCCAAAAA-------ACCCAGGAA-GGAATA-CGTCCCCGATTACGCTACTAACCCGTGCTACACCTG-TG---GAGCAACAGGACATTAATCACCG----G-ATTGCCCACAGAA-AA------------C--ATATTCCCCGCAAACCAGTAAGAAATCCTGGTC------GTCAG------ATTCCCAGAGTAAGAATTCACAGAAGACC--AACAAGAAAACTA-AACAAAAGAAT-CCTTGCTAC-AAGTGCGGAAAACTAGGACACTGGATC-AGTGACTGTCCGG--AAGAACAAGCTGAGATAGCTGCGATGATT-CCTCCAGTACCTGGCTCAAAACCGCCCGTGAAGAGAGAGTA-ACACCGTTAGAGATGGGGAACCCAC-CCGCACCTAAACAAACCAGTGAAAAAC-CACC-G-AAAAGAAGAAGATACTCAGC-AAAAAAT-A----A-A-----CTGGACTGTGC-T----TAG-TGAACTGTTTGTA---TGCTTAGTGAGCACTGTGAA-CTGTT--TAAAAACTGTGCTTAGTGA-AATG---TGCATTG--T-TCTTGTTTCAAATGTTTA----TGCTTTAATAAACATGTAAACTTAAAAACCTTGTGTTATTATTTCACCCAGCTTGTGA-TTTAT-TA-TGGATTT---C-----A------TGGA--TTTA----AT-ACACAGGATTTCATAGGATGTTA----------TGCACTGCATG--TT--AT----CGA------ATTTT-------TAACAGTGCAACA-----------T-TTGACGTC-ATAATGC------ACTTCTC-CAAGTCAAAACCGCTTGACGTCA-CAATGGCCAGT-AGCTCGCGCTCCACGC----TGTGCTA-A--AATC-----TGCA-CT---CTAAACTA--GGC---------------TA---A--T---AC---ACTGC----GCC---CTCAACCC------GGC----CGGG-CT----CAC-A------GG----GC------TATAA---ACCCGGCC------GGGCTCACAGGGCTA-----T--A---C-A-CC-GG---C----CGTGCTATTA-----ACCGATCGGGCTAACCGTC---GACCCTTGCT-GGGTCAACCCGCTTGA-CC---AATCAGAA--------------TTGACATCATTTG-CA-TAAAAA-----TTGCACTC--G---TTGA--AAC--CACCCATGGA------GG--------C--------GCGTTATACT--------------------ACT
gi|10 : ggctataaaagcagagtccccgctttcacttttcacatcgacttcagaccttgacctgagaacatggctcagaaacagctataattcgtggacagggctcagaagaaagtggataacatgatacagaaacagacagggcttcagaaagatgtcttgaaagaagaggacagacaagaggtacaggaggcttacattgcacatcagctgaaaaaggcgaagactgaggagtatctacctCCCCGCAGACCAGTAAGAAA------TCCCGGTTGTCAG------ATTCCCA----------GC-----AGACC--AGCAAGAAA-CCA-AAGAAAAGGAT-CCTTGCTAC-AAGTGCGGAAA-CTAGGACACTGGATC-AGTAACTGTCCGG--AAGAACAAGCCGAGATAGATGCGATGAT--CCCCCCGTACCTGGCTCAAAACCGCCCATCAAGAGATAGTACAAACCGTTAGAGATGTGGAACCCGC-CCACACCTAAACAACCTACTGAAAAAC-CGCA-GAAAAAGAAGATGAGCTTTAGC-C--AAGTTA----A-A-----
gi|11 : aaatcatccG--AAGAACAAGCTGAGATAGAAGCAATGATG-TCCCCGGTTCC----------CTGC-----AAGAGAGGGTACAAACCTTGAGAGATGTGGAAACCTC-CAGCGCCTAAA-AGACCACTGAAGAAC-CGCA-GAAAAAGAAGAGGAAACTAAGT-AGAAATTAATGTTA-AACT--CTGGAC---GG-T----T-A-TAAACTG--TGAA---CTCTTA-----C----AAAAGCTGT------AAACTGT-T---ATAA-GCTG---TGAACTG--TGTT--------------TATGGGTGGTTTAAAAAAAATGAAGATTT--tgcttga
gi|12 : GGAACCATACAAGAATCCTACTCAAGAAGCTGGGAGAGCTGAAGTAGAAAAA-------CCCCATGAATGAAATA----TCCA----------CTAACCTCTGCTGCACTTG-TA------AAACAG--------------------ATTGCCCACAAAA-AA------------CCAAGA--------AAACCTG------G------TC------TCTAA------ATTCTTC----------GC-----AGAAA--ACCAAGAAAACTAGAACGAA-GGAC-CCTTGCTAC-AAGTGCGGTAAACTTGGACATTGGATC-AACAATTGTCCGG--AAGAACAAGC
gi|13 : -ATAATGCTTTTTCACTTCTC-CAAGTCCAG-CCGAATGACGTCA-CAATAGCCAGT-AGCTCGCGCTT----C----TGTGCTA-A--AACC-----TTGCACT---CTAAACTA--GGC---------------TA---A-----------AACAC----TCTCAACT-A----------GGC----CAGC-CTATA-AAC-C------AG----GG------TATAC---ACCAGCCC------G---T------GCTC-----T--A---A-A-CC-GG---G----C-------TA-----G---------------------GACCCCTGCTGAGGTCAAACCGCT
gi|14 : actgcttgttatagcatagaggaacattggatgagcaaatT--TCAAACCTGT-GTTCAA----CTG---TGC-TTA--A-AC--------------TC----TGCTTTAATA--CAT--AAGCTT--AAACCCTGAGCTATTCTT--ACCAATCTTG-GATTTTATGCACTGGAATT---T-----ATTGC-TTGGA--TTTA-GCGAT-ACACA
gi|14 : tccGGATTTTATGCAC-----TGGAATTTATTGCTTGGATTTAGCGAT-ACACATTCCGAGACTTTAAAAGTGCTACATTttccgagactttaaaagtgctacatt
gi|15 : tccttcaaacctgtgttcaactgtgcttaaactctgctttaatacataagcttaaaccctgagctattcttaccaatcttT--TCAAACCTGT-GTTCAA----CTG---TGC-TTAAAT-GC--------------TG----TGCTT-AATA--CAT--AAGCTT--AAACCCTGAGCTATTCTT--ACCAATCTTG-GATTTTATGCACTGGAATT---T-----A-TGCCTTGGA--TTTA-GCGAT-ACACA
gi|15 : ccGGATTTTATGCAC-----TGGAATTTATGCCTTGGATTTAGCGAT-ACACATTCCGAGACTTTAAAAGTGCTACATTttccgagactttaaaagtgctacatt
gi|17 : ccttcaaacctgtgttcaactgtgcttaaatgctgtgcttaatacataagcttaaaccctgagctattcttaccaatcttCCAACC------G---C------ACTA-----T--GTTGA-A-CC-AG---C----C--------A-----T-----------------C---TACCCCACCT--------ACC-CTCGA-CC---AATCAGAA--------------ATGACCTCAC--------AAAAA-----GTGCACTT-AG---TTA---AAC--CAGCCATAGA------GG--------C--------AC-CT
gi|18 : acctCACTTT-CACTCAAAA-----GTGCACTC-AG---TTG----AC--CTCCCATTGG------GG--------tatacta
gi|2 : CACTCAGAATCCT-ACA-AC-CCAGGCTTG--GG-TTTT-TTTTCCCGGAGATTC-AGAGGCACAAGATGT--CACGGGA-CTGGAA-CTGGGCCTCT-CAA------CCCT-CCAGAATG-------------AGCCCTTCCGGCC--AGACAA--GAAGACTTTGCGATTCATTAC---CACCGACATAAGA-CGGGATTGTTA--CGCATTAATGTGCTGCGTAATGAGATTGGAAATCATACCACCGTCCTGCTGAAGAAGCTGGAAGACCTGACGGGGAAAAATCTAGATCCCTAGGAA-GAACTATCACTCCAGATTCGGCTA-TAACCCGTGCTCAACTTGTTGCGTGTGAAACAGGGCATTGGTCGCCG----GTATTGCCCCCAGAATAG------------C--AGATTTCCCGCA-ACCAGTAAGAAAGATTT-TCGCA---GACAGTAAGAAATCGCCG----------AT-----A-ACCAGAGAAAGAAAA-CA-AACAACGGGATCCCTTGC-ACAAAGTGCGGGAAATT-GGACACTGGATCAAGTGACTGTCCGGAAAAGAA-AAGCGGAG-TCGATGAGATGATTGGGCCCCGTAACTGGCTCAAAACC-CGCTTGAAGAGAGAGTACAAACCGCTAGAGA-GT----CCCCT-CCGC----------ACTACTGAAGAA--CGCCTTAAAAAGAAGA-GCAACTGAGCACG-AAGTAA----A-AAAAACTTGAACTGTTT-TTTTAT-GCTGAACTGTTT-TACATTGATAA-----C----TGAA-CTGTT--TTTATGCTG--TTTAATAA-ACTGGTTTGAGTTG--T-----------------------TGCTTTAATAAACATGTAAACTT--AAAACCTGGTGTAGTCTTT-ATTATGCT---GAGCGAATACAC-AGATTTAAACAAGGAA-TAGACTGGATTTTTATGCGATGATACAGGAATACACAGGA--ACA----C-----TGGATTTTATGC----GAT----CGATAACACATTCC-------TAAGTGTGATACA---------TTT-ATGACGTCAATAATG----------TCTCTCAAG----GTCCGATT--TTTCAGAAATAG-CATTCAGC-----CTT----T----TTCACGA-ATCAAGC-----------------GAAGTA--GAT---------------CC---A--C--GGC---AATAT----A--------------------GC----CAAC-TTATATAAC-C-------G----CC------TCTAA---A-CCAGCC------G---T------GCTA-----T--A---ATA-CC-GGTACT----C-------TAAACCGG-----------------CTAGGACCCCTGCTGGGGTCAAAC----TGA-CC---g
gi|2 : ttttcacattttacacctgcaaccagagaacatggctctagatgaacaggctagaattcgtggacagagtcagaagaagtgaataacatggtacgaaaaagacgggaatgcaacaggagatttcttggcgaagcaaacagttagacagggtacatgagcttacattggcacagcagctgataaaaggcaaggactgaggatttctaatacgctTA-T--AACCG----C----CT---CTAAACCA--G-C---------------CGT--G--C--TAT---AATACCGGTACT---CT-A----------AAC----CGGC--TAGG-ACC-CCTGCTGGG----GT------CA-AACTGACCCGTCT------A---T------GCTA-----TTTG---A-A-CC-G----C----C-------CA-----T-----------------C---GAGCCCTG--------AAAACGCTTGAACCTCAAGTCAGCAAGAACCGCATCTGCTTGACCTCATTTGTCA-TAAAAACAACGGTGCACTCAAG---TTGTGAAACCTCCCCTATGGA------GG--------cgtctatgctatttgaaccgcccatcgagccctgaaaacgcttgaacctcaagtcagcaagaaccgcatctgcttgacctcatttgtcataaaaacaacggtgcactcaagttgtgaaacctcccctatggagggcggaggctactaa
gi|3 : ttttcacattttacacctgcaaccagagaacatggctctagatgaacaggctagaattcgtggacagagtcagaagaagtgaataacatggtacgaaaaagacgggaatgcaacaggagatttcttggcgaagcaaacagttagacagggtacatgagcttacattggcacagcagctgataaaaggcaaggactgaggatttctaatacgctcactcagaatcctacaacccaggcttgggttttttttcccggagattcagaggcacaagatgtcacgggactggaactgggcctctcaaccctccagaatgagcccttccggccagacaagaagactttgcgattcattaccaccgacataagacgggattgttacgcattaatgtgctgcgtaatgagattggaaatcataccaccgtcctgctgaagaagctggaagacctgacggggaaaaatctagatccctaggaagaactatcactccagattcggctataacccgtgctcaacttgttgcgtgtgaaacagggcattggtcgccggtattgcccccagaatagcagatttcccgcaaccagtaagaaagattttcgcagacagtaagaaatcgccgataaccagagaaagaaaacaaacaacgggatcccttgcacaaagtgcgggaaattggacactggatcaagtgactgtccggaaaagaaaagcggagtcgatgagatgattgggccccgtaactggctcaaaacccgcttgaagagagagtacaaaccgctagagagtcccctccgcactactgaagaacgccttaaaaagaagagcaactgagcacgaagtaaaaaaaacttgaactgtttttttatgctgaactgttttacattgataactgaactgtttttatgctgtttaataaactggtttgagttgttgctttaataaacatgtaaacttaaaacctggtgtagtctttattatgctgagcgaatacacagatttaaacaaggaatagactggatttttatgcgatgatacaggaatacacaggaacactggattttatgcgatcgataacacattcctaagtgtgatacatttatgacgtcaataatgtctctcaaggtccgatttttcagaaatagcattcagcctttttcacgaatcaagcgaagtagatccacggcaatatagccaacttaCACTCAGAATCCT-ACAGAC-CCAGGCTTG--GGATGTT-TTCCCCCGGAGATTCCAGAGTCACAAGATGT--AACAGGG-CTGGAA-CTGGGGCTCTACAA------CCCT-C-AGAATG--------------AACCT-CCGAACCTGAACAA-AGAAGATTTTGCGAT-CATTAC---CACG-ACACTAGA-CGGGATCGTTAACCGCATTAATGTGCTGAGTAATGAGATTGGAAATCATACCACAGTCCTACTGAAGAAGCTGGAAGAGCTGACGGGTAAAAA-------GCCTAGGAA-GGAATA-CACCTCAGATTACGCTACTAAACCGTGTTACACTTG-TG---GACAAACAGGACATTATTCGCCG----G-ATTGCCCACAGAA-AA------------C--AGATTATCCGCAGACCAGTAAGAAA------TT------GGCAG------ATTCCCA----------CC-----AGACT--AGCAAGAAAACCA-AACAAAGGGAT-CCTTGCTAC-AAGTGCGGAAAATTAGGACACTGGATC-AGTGAACGTCCTG--AAGAACAAGCGGAGATAGCCGAGATGATT-GGTCCCGTACCTGGCTCAAAACCCACTGTGAAGAGAGAGTACAAACCGTTAGAGATGTGGAATCCGC-CCGTACCTAAACAAACCAGTGAAGAAC-TACC-G-AAAAGAAGAAGAAACTTAGC-CGAAAGTAA----ATA-----CGGGACTGTGC-T--------TGAACTGTTTTTA---TGCTTA-----T----TCAA-CTATT--TAAAAACTGT-TTTAAAAACATTG---TGCATTG--T-TC--------------TA----TGCTTTAATAAACATGTAAACTT--AAACCTTGTGTTATTCTTT-A--------------TTATGCACAGGATTT---C-----A-TACACAGGA--TTTA----AT-ACACAGGAATACATAGGATTTTA----C-----TGGATTTTATCCCTTGGAT----CGAT-ACACATTCC-------TAAGTGTGCTACATTT------TTT-TTGACGTC-ATAATGC---------TCTC-CAAGTCCCAACCGAATGACGTCA-TAATAA--A----------GCTC----C----TGTGCTA-A--AAC-----------CT---CTAAACTA--GGC---------------CA---G--C--GGC---AATAC----ACT---CT-A----------GGC----CGAC-CTATA-AAC-C------GG----GC------TGTAA---ACCCGGCC------A---T------GCTA-----T--A---A-A-CA-GG---C----C-------TA-----G---------------------GACCCCTGCTGGGGTCAAATCGCTTGA-CC---AATCAGCA--------------TTGACCTCATTTG-CA-TAAAAA-----GTGCACTC-AG---TTG---ACC--TCCCTATGGA------GG--------C--------GC-TTG-ACC--------------------ACTCCG---T---TGACCCCGCCAATCAGCGTCCTAGATATTGAACTCCCTAT-CGAAGCGGGTTATACTACTgcggaggctactaa
gi|4 : GGCTTG--GGATTAT-TTT-CCCGAACATCCCGGAGTCACAAGATGT--AACGGGA-CTGGAA-CTGGGCCTCTACAA------CACT-C-AGAATGTATCG-------GAGACC--CCGGTCATGAACAA-AGAAGATTTTGCGAT-CATTTC---CACT-ACACTAGA-CGGGATCGTTAACCGCATTAATGTGCTGAGTGACGAAATTGGAAATCATACCACAATCCTACTGAAGAAGCTGGAAGAGCTGACGCCTAAAAA-------CCCCAGGAA-GGAATA-CGTTCCCAATTACGCTACTAACCCGTGCTACACTTG-TG---GAGAAACAGGACATTGGTCGCCG----G-ATTGCCCACAGAA-AA------------C--AGATTTCCCGCAGACCAGTAAGAAA------TC--------CAG------AT----------------------AAAAC--A-----AAAACCA-AACAAAAGGAT-CCTTGCTAC-AAGTGCGGAAAATTAGGACACTGGATC-AGTGACTGTCCAA--AAGAACAAGCGGAGATAGCTGCGATGATT-CCTCCAGTACCTGACTCAAAACCCCCTGTGA--AGAGAGTACAAACAGTTAGAGATGTGGAATCCGC-CCGCACCTAAACAAACCACTGAAGAAC-CACC-GAAAAAGAA---GAAACTCAGC-AAAAAGT-A----A-A-----CTGGACTGTGCTT----T-G-TGAACTGTTTTTA---TGCTTA-----C----TGAA-CTGTTACTGTGAACTG--TTTAAAac
gi|5 : GGGTTTTA----TGCAG-CGGATTTTATGCCTTGGAT----CGAT-ACACATTCC-------TACACGTACTACATTT------TTT-TTTACGTC-ATAATGC------ACTTCTC-CAAGGCTAG-CCGAATGACGTCA-CAATAG------AGCTCGCGCTC----C----TGTGCTA-A--AACCTGCACT----CTAAACTAGGCCAACGGCAATTTGATACACTCTCA---A--CTAGGC---CATAC----GCT---CT-AAACCCGGCCGGGCTCACCGGC-CTCTA-AACTC------GGCCATGC------TATAA---TCCCGACC------G---G------GCTA-----T--A---A-A-CCCGG---C----CGGAC---TA-----G---------------------GACCCCTGCTGTGGTCAAACCTCTTGA-CC---AATCAGCA--------------TTGACCTCATTTG-CA-TAAAAA-----GTGCACTC-AG---TTG---AAC--TCGCTATGGAAACCGGGG--------CCAGGTCAAGC-TTG-ACCCCCACTGCGCATGTGCGATGACCCCGCCAT---TGACCCAGCCAATCAGCGTCCTAGATATTGAACTCGCCAT-GGAGGCCGGTTATACTACT
gi|6 : CCAGAATCCTTACAGACTCCAGGCTTCATGGATTTTATTTTTCCTGACA---------CACAGGATGGCAAACCGGATCTGGAAACTAGGTCTCTATAATCTCCTCACTAC-AGAATGCATCGCGAACTAGAGCCCT-CC--CACTGA-CAAGATAACATTTC-CGCT--ATTTCACATACC-ACTCTAGAACAAGATAGTAAACAAGATTAATGGACTGGTCGAGGATATTGGTAAtccgt
gi|7 : gctataaaaatcaggccagatgtcctacacttcaatccgacttcagacagtgagcagacaacataggcacagaaacgggctagattttgtgcgacagaagttcagaagaaagtcaatagatagtacacacttcagtatcagttgggtcccagaaatatttacttgagtgaaagaggacagatatgagccttacatgctggcacatccagctaaaaaaggcgcaggaacaagccaatggttatatagGAAAAAGATGGAAGAGCTGACAGCGAAAAA--------------------------CTCCAGA-TACGCCACT-ACCCGAGCTACACTTG-TG---GAGAAATAGGCCATT-GTCACCGGATTG-ATTGCCTGCAGAA-AACTAAGAAAACCTC--AGATTCCCCGCAGACCAGTAAGAAA------TCCCGGTTGTCAG------ATTCCCA----------GC-----AGACC--AGCAAGAAAACCA-AAGAAAA--AT-CCTTGCTAC-AAGTGCGG-AAACTAGGACACTGGATC-AGTAAC-GTCCGG--AAGAACAAGCCGAGATAGATGCGATGA-T-CCCCCCGTACCTGGCTCAAAACCGCCCATCAAGAGATAGTACAAACCGTTAGAGATGTGGAA-CCGCGCCACACCTAAACAACCTACTGAA-AACACGCA-GAAAAAAAAGATGAAGCTTAGC-CGAAAGTAA----A-
gi|8 : GGATTT---C-----A-TGCAC-GGT--TTTA---------------ATAC-CAGGATTTTA----TACCGTTGGATTTTA-------G------TGAT-ACACATTCC-------TAAAAGTGCTA-ATTTAAGGAATTTGTTGACGTC-A-AATACTTTTC-ACTTCTC----GTCCA--CCGCTTGATG-CA-CAATAGCCAGT-AGCTCGTGCTC----CAAACTGTGCTA-A--AACC-----TGCCACT---C-AAACTA--GGC---------------TA---A-----ATC---AATGC----ACT--------------------------GCGCTCTC-AAC-T------AG----GCAGCC--TATAA----CCCGG-------------------GCTA-----T--A---A-A-CC-GG---G----C-------TG-----G-----------------C---GACCC-TGCTGGGATCA----------------AAACAGC---------------TTGAC---------------------------ACCT-AC---TTG---A----CCCCCACTGA------CA--------T--------GT-CCG-ATG--------------------ACGCCA---TCATTGACC-AGCAAACCAGCGTCCTAGATATTGAAA-CCCCATCGGAGG-CGTTTATACTACTtgc
gi|9 : gtaCTC----C----TGTGCTA-A--AACC-----TGCA-CT---CTAAACTATAGGC---------------CA---A-----GTC---AAAAC----ACTGCGCT-ATCAACCC---GGC----CGGG-CTC----AC-C------GG----GT------TATAA---ACCCGGCCTCACCAG----------GCTA-----T--A---A-ATCC-GG---T----C-------TA-----G-----------------ca
gi|9 : C-CAAGTCAAAAC--ACTG-CGCTATCAA---CCCG---GC-CGGGCTCA---C----CGGGTTATA--AACC-----CGGC-CT---C---ACCA--GGC---------------TATAAATCC--GGTCTAGATAT----AAA---CC-A----------GGC----CGGG-C--TA-GCC-C------AG----CC------TCTAA---ACCCGGCT------G---T------GCTA-----T--A---A-ACCC-GG---CCGGGC-------TAGCCCGG-----------------C---GACCCCTACTGGGGTCAAACTGC--G---C---ACTC--CG--------------TTGACCCC-------------AA-----GCGTCCT--AGATATTG---AAC--CGGCCATGGA------GGCCCGAAACC--------GC-TTG-ACC--------------------AATCatataaaccaggccgggctagcccagcctctaaacccggctgtgctataaacccggccgggctagcccggcgacccctactggggtcaaactgcgcactccgttgaccccaagcgtcctagatattgaaccggccatggaggcccgaaaccgcttgaccaatcagaagtctccctgctttaccttatttgcataaaaagtgcactcagttgaaccgcctatgtattggcgttatacca
gi|9 : ctcctgtgctaaaacctgcactctaaactatagg----C----TGTGCTATA--AACC-----C----GG---CCGGGCTA--GCC---------------CG---G--C--GAC-------------CC---CT-ACT--------GG------GGT-C---A-AAC-T------GC----GCACTCCGT-TGA---CCCCAAGC------G---T------CCTAGATATT--G---A-A-CC-GG---C----CA------TG-----G-----------------A---GGCCC--------G--AAACCGCTTGA-CC---AATCAGAAGTCTCCCTGC----TTTACCTTATTTG-CA-TAAAAA-----GTGCACTC-AG---TTG---AAC--CGCCTATGTATT----GG--------C--------GT-TAT-ACC--------------------Aagaagtctccctgctttaccttatttgcataaaaagtgcactcagttgaaccgcctatgtattggcgttatacca
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|16 ): GATGAAAAATGGAATAAGACAAGTGGGAAGAAGAAGACAGGGAAAAGGGGACGAATGCAACGAGATGTTCTTGAGCGCAATGATAGACAGGAAGGTACAGGAGGCTTACATGGCACAGGCAGCTGAAAAAGGGCAAGAC
Alignments
lowQualScore : 1 1 11 1 11 222222 444444444444 11 111 22222222 111 111 111111 333333333333 6666666666666666666666666666666666666666666666666666666 1111 22222 33333333 111 3333333333 2222 111 66666666666666666666666666 11 2222222222222222 22222222222222222 2222 5555555555 2222 3333333 222222222 3333333 11 333333333333333333333333333333333 4444444444444444444444 8888888888888888888888888888888888888888888888888888888888888888888888888888888888 22222222222222222 111111111111 666666666666666666666666666666666666 55555555555555 11111 111 3333333333333333333333333 66666666666666666666666666666 1
lowQualScore : 0 2 0 11 0 8 3 22 66 0 11 8 8 1 0 333333 0 8 8 333333333333 0 88 3 11 0 88 8 1 444 8 4 8 0 1 1 22 88888888 6 222 1 3 6 111 1 88 555555 6 444444444444 1 3 8888888888888888888888888888888888888888888888888888888 77 3 5 2 5 5 3 1 5 0 66 1 1 77 0 4 0 1 0 5 5 0 0 1 5 66 5 8 1 9999 8 2222 5 88888 0 8 22222222 0 8 444 0000000000 8 77 44 5 1 1111 111 9 55555555555555555555555555 7 00 99 1 1 2222222222222222 3 6 88888888888888888 99 6666 6 3 2222222222 0 999 4 4444 5 7777777 1 666666666 8 6 9999999 6 3 1 99 1 6 222222222222222222222222222222222 55 8 55 8888 1111111111111111111111 4 4 55 0 2222222222222222222222222222222222222222222222222222222222222222222222222222222222 777 55555555555555555 333333333333 3 3 3 666 111111111111111111111111111111111111 66 0 4 4 777 0 11111111111111 5 44 4 11111 4 777 222 44 66 0 1111111111111111111111111 5 6 55555555555555555555555555555 7 7 3 6
lowQualScore : . . . .. . . . .. .. . .. . . . . ...... . . . ............ . .. . .. . .. . . ... . . . . . . .. ........ . ... . . . ... . .. ...... . ............ . . ....................................................... .. . . . . . . . . . .. . . .. . . . . . . . . . . . .. . . . .... . .... . ..... . . ........ . . ... .......... . .. .. . . .... ... . .......................... . .. .. . . ................ . . ................. .. .... . . .......... . ... . .... . ....... . ......... . . ....... . . . .. . . ................................. .. . .. .... ...................... . . .. . .................................................................................. ... ................. ............ . . . ... .................................... .. . . . ... . .............. . .. . ..... . ... ... .. .. . ......................... . . ............................. . . . .
lowQualScore : 0 5 0 00 8 0 6 22 44 6 00 0 0 4 8 000000 6 0 0 666666666666 6 66 2 88 8 88 0 4 000 0 6 0 8 4 4 00 33333333 7 888 0 2 7 777 5 88 000000 7 222222222222 7 0 3333333333333333333333333333333333333333333333333333333 99 0 7 3 7 7 9 7 7 1 99 0 3 11 7 3 7 7 7 3 7 1 7 7 7 44 0 6 0 6666 7 1111 7 33333 8 0 00000000 8 8 000 2222222222 0 99 99 7 3 2222 777 8 33333333333333333333333333 3 00 22 0 4 0000000000000000 2 0 55555555555555555 22 7777 7 2 4444444444 6 333 3 3333 7 1111111 9 555555555 0 7 0000000 7 2 0 33 0 7 111111111111111111111111111111111 55 0 55 5555 4444444444444444444444 0 0 55 7 7777777777777777777777777777777777777777777777777777777777777777777777777777777777 000 88888888888888888 222222222222 6 6 6 444 555555555555555555555555555555555555 66 7 0 4 888 4 22222222222222 0 66 4 11111 4 888 222 99 11 1 3333333333333333333333333 7 7 22222222222222222222222222222 0 3 3 7
consensus : CACCCAGAATCCT-ACAGAC-CCAGGCTTG--GGATTTT-TTTTCCCGGACATCCCGGAGTCACAAGATGT--AACGGGA-CTGGAA-CTGGGCCTCTACAA------CACT-C-AGAATGCATCG-------GAGACCT-CCGGCCATGAACAA-AGAAGATTTTGCGAT-CATTTC---CACC-ACGCTAGA-CGGGATCGTTAACCGCATTAATGTGCTGAGTGACGAGATTGGAAATCATACCACAATCCTACTGAAGAAGCTGGAAGAGCTGACGGNNAAAAA-------CCCCAGGAA-GGAATA-CGCTCCAGATTACGCTACTAACCCGTGCTACACTTG-TG---GAGAAACAGGACATTGGTCGCCG----G-ATTGCCCACAGAA-AA------------CAGATTCCCCGCAGACCAGTAAGAAA----TC-----C-G---GTC---AG------ATTCCCAG----------C-----AGACC--AGCAAGAAAACCA-AACAAAAGGAT-CCTTGCTAC-AAGTGCGGAAAACTAGGACACTGGATC-AGTGACTGTCCGG--AAGAACAAGCNGAGATAGATGCGATGATT-CCCCCCGTACCTGGCTCAAAACCGCCCGTGAAGAGAGAGTACAAACCGTTAGAGATGTGGAACCCGC-CCGCACCTAAACAAACCACTGAAGAAC-CGCC-GAAAAAGAAGANGAAACTNAGC-CGAAAGTAA----A-A-----CTGGACTGTGC-T----T-G-TGAACTGTTTNTA---TGCTTA-----C----TGAA-CTGTT--TNAAAACTGT-TTTAATAA-ACTG---TGCATTG--T-TC--------------TA----TGCTTTAATAAACATGTAAACTT--AAACCCTGNGCTATTCTTT-ACCAANCTTG-GATTTTATGCACTGGATTT---C-----A-TGCACTGGA--TTTA-GCGAT-ACACAGGAATACACAGGATTTTA----C-----TGGATTTTATGCCTTGGAT----CGAT-ACACATTCC-------TAAAAGTGCTACATTT------TTT-TTGACGTC-ATAATGC------ACTTCTC-CAAGTCCAG-CCGANTGACGTCA-CAATAGCCAGT-AGCTCGC--------GCT----C----CTGCGCT--A-A--A----ACC---------------CGC--T-CT-AAAC-TA--GGCCA-ACGGCAATAC----GCT---CT-A----------GGC----CGGC-CTNTA-AAC-C------GG----G----C------TATAA---ACCCGGCC------G---T------GCTA-----T--A---A-A-CC-GG---CC-------TA-----G-----------------C---GACCCCTGCTGGGGTC-AAACCGCTTGA-CC---AATCAGCA--------------TTGA-CCTCATTTG-CA-TAAAAA-----GTGCACTC-AG---TTG---AACCGCCC--ATGGA------GG--------C--------GC-TTG-ACC--------------------ACTCCG---TTGACCC-GCCAATCAGCGTCCTAGATATTGAACTCCCCAT-GGAGGCCGGTTATACTACT
Reference ( family-1393 ) : CACCCAGAATCCT-ACAGAC-CCAGGCTTG--GGATTTT-TTTTCCCGGACATCCCGGAGTCACAAGATGT--AACGGGA-CTGGAA-CTGGGCCTCTACAA------CACT-C-AGAATGCATCG-------GAGACCT-CCGGCCNTGAACAA-AGAAGATTTTGCGAT-CATTTC---CACC-ACGCTAGA-CGGGATCGTTAACCGCATTAATGTGCTGAGTGACGAGATTGGAAATCATACCACAATCCTACTGAAGAAGCTGGAAGAGCTGACGGNNAAAAA-------CCCCAGGAA-GGAATA-CGCTCCAGATTACGCTACTAACCCGTGCTACACTTG-TG---GAGAAACAGGACATTGGTCGCCG----G-ATTGCCCACAGAA-AA------------CAGATTCCCCGCAGACCAGTAAGAAA----TC-----C-----GNC---AG------ATTCCCAG----------C-----AGACC--AGCAAGAAAACCA-AACAAAAGGAT-CCTTGCTAC-AAGTGCGGAAAACTAGGACACTGGATC-AGTGACTGTCCGG--AAGAACAAGCNGAGATAGATGCGATGATT-CCCCCCGTACCTGGCTCAAAACCGCCCGTGAAGAGAGAGTACAAACCGTTAGAGATGTGGAACCCGC-CCGCACCTAAACAAACCACTGAAGAAC-CGCC-GAAAAAGAAGANGAAACTNAGC-CGAAAGTAA----A-A-----CTGGACTGTGC-T----T-G-TGAACTGTTTNTA---TGCTTA-----C----TGAA-CTGTT--TNAAAACTGT-TTTAANAA-ACTG---TGCATTG--T-TC--------------TA----TGCTTTAATAAACATGTAAACTT--AAACCCTGNGCTATTCTTT-ACCAANCTTG-GATTTTATGCACTGGATTT---C-----A-TGCACTGGA--TTTA-GCGAT-ACACAGGAATACACAGGATTTTA----C-----TGGATTTTATGCCTTGGAT----CGAT-ACACATTCC-------TAAAAGTGCTACATTT------TTT-TTGACGTC-ATAATGC------ACTTCTC-CAAGTCCAGACCGANTGACGTCA-CAATAGCCAGT-AGCTCGC--------GCT----C----CTGTGCT--A-A--A----ACC---------------CGC--T-CT-AAAC-TA--GGCCA-ACGGCAATAC----ACT---CT-A----------GGC----CGGC-CTATA-AAC-C------GG----G----C------TATAA---ACCCGGCC------G---T------GCTA-----T--A---A-A-CC-GG---CC-------TA-----G-----------------C---GACCCCTGCTGGGGTC-AAACCGCTTGA-CC---AATCAGCA--------------TTGA-CCTCATTTG-CA-TAAAAA-----GTGCACTC-AG---TTG---AACCNCCC--ATGGA------GG--------C--------GC-TTG-ACC--------------------ACTCCG---TTGACCCAGCCAATCAGCGTCCTAGATATTGAACTCCCCAT-GGAGGCCGGTTATACTACT
gi|1 : ACCCAGAATATG-ACAGAC-CCAGGCTTA--GGATTTT-TTT-CCCGGACTTCCCGGAGTCACCGAATGT--AACGGGA-CTGGAA-CTGGGTCTCTACAA------CACT-C-AGAATGCATTG-------GAAACC--ACAGCCATGAACAA-AGAAGATTTTGCGAA-CATTTC---CACC-ATGCTAGA-CGGGATCGTTAACCGCATTAATGTGCTGAGTGACGAAATTGGAAATCATACCAGAATCCTG-TAAAGAAGCTGGAAGAGCTGACAGCCAAAAA-------ACCCAGGAA-GGAATA-CGTCCCCGATTACGCTACTAACCCGTGCTACACCTG-TG---GAGCAACAGGACATTAATCACCG----G-ATTGCCCACAGAA-AA------------CATATTCCCCGCAAACCAGTAAGAAA----TCCTGGTC-----GTC---AG------ATTCCCAGAGTAAGAATTCACAGAAGACC--AACAAGAAAACTA-AACAAAAGAAT-CCTTGCTAC-AAGTGCGGAAAACTAGGACACTGGATC-AGTGACTGTCCGG--AAGAACAAGCTGAGATAGCTGCGATGATT-CCTCCAGTACCTGGCTCAAAACCGCCCGTGAAGAGAGAGTA-ACACCGTTAGAGATGGGGAACCCAC-CCGCACCTAAACAAACCAGTGAAAAAC-CACC-G-AAAAGAAGAAGATACTCAGC-AAAAAAT-A----A-A-----CTGGACTGTGC-T----TAG-TGAACTGTTTGTA---TGCTTAGTGAGCACTGTGAA-CTGTT--TAAAAACTGTGCTTAGTGA-AATG---TGCATTG--T-TCTTGTTTCAAATGTTTA----TGCTTTAATAAACATGTAAACTTAAAAACCTTGTGTTATTATTTCACCCAGCTTGTGA-TTTAT-TA-TGGATTT---C-----A------TGGA--TTTA----AT-ACACAGGATTTCATAGGATGTTA----------TGCACTGCATG--TT--AT----CGA------ATTTT-------TAACAGTGCAACA-----------T-TTGACGTC-ATAATGC------ACTTCTC-CAAGTCAAAACCGCTTGACGTCA-CAATGGCCAGT-AGCTCGC--------GCT----CCACGCTGTGCT--A-A--A----ATCTG-------------CAC--T-CT-AAAC-TA--GGCTA-AT-ACACTGC----GCC---CTCAACCC------GGC----CGGG-CT----CAC-A------GG----G----C------TATAA---ACCCGGCC------GGGCTCACAGGGCTA-----T--A---C-A-CC-GG---CCGTGCTATTA-----ACCGATCGGGCTAACCGTC---GACCCTTGCT-GGGTC-AACCCGCTTGA-CC---AATCAGAA--------------TTGA-CATCATTTG-CA-TAAAAA-----TTGCACTC--G---TTGA--AACCACCC--ATGGA------GG--------C--------GCGTTATACT--------------------ACT
gi|10 : ggctataaaagcagagtccccgctttcacttttcacatcgacttcagaccttgacctgagaacatggctcagaaacagctataattcgtggacagggctcagaagaaagtggataacatgatacagaaacagacagggcttcagaaagatgtcttgaaagaagaggacagacaagaggtacaggaggcttacattgcacatcagctgaaaaaggcgaagactgaggagtatctacctCCCCGCAGACCAGTAAGAAA----TC-----CCGGTTGTC---AG------ATTCCCAG----------C-----AGACC--AGCAAGAAA-CCA-AAGAAAAGGAT-CCTTGCTAC-AAGTGCGGAAA-CTAGGACACTGGATC-AGTAACTGTCCGG--AAGAACAAGCCGAGATAGATGCGATGAT--CCCCCCGTACCTGGCTCAAAACCGCCCATCAAGAGATAGTACAAACCGTTAGAGATGTGGAACCCGC-CCACACCTAAACAACCTACTGAAAAAC-CGCA-GAAAAAGAAGATGAGCTTTAGC-C--AAGTTA----A-A-----
gi|11 : aaatcatccG--AAGAACAAGCTGAGATAGAAGCAATGATG-TCCCCGGTTCC----------CTGC-----AAGAGAGGGTACAAACCTTGAGAGATGTGGAAACCTC-CAGCGCCTAAA-AGACCACTGAAGAAC-CGCA-GAAAAAGAAGAGGAAACTAAGT-AGAAATTAATGTTA-AACT--CTGGAC---GG-T----T-A-TAAACTG--TGAA---CTCTTA-----C----AAAAGCTGT------AAACTGT-T---ATAA-GCTG---TGAACTG--TGTT--------------TATGGGTGGTTTAAAAAAAATGAAGATTT--tgcttga
gi|12 : GGAACCATACAAGAATCCTACTCAAGAAGCTGGGAGAGCTGAAGTAGAAAAA-------CCCCATGAATGAAATA----TCCA----------CTAACCTCTGCTGCACTTG-TA------AAACAG--------------------ATTGCCCACAAAA-AA------------C------------------CAAGAAA----AC-----CTG---GTCTCTAA------ATTCTTCG----------C-----AGAAA--ACCAAGAAAACTAGAACGAA-GGAC-CCTTGCTAC-AAGTGCGGTAAACTTGGACATTGGATC-AACAATTGTCCGG--AAGAACAAGC
gi|13 : -ATAATGCTTTTTCACTTCTC-CAAGTCCAG-CCGAATGACGTCA-CAATAGCCAGT-AGCTCGC--------GCT----T----CTGTGCT--A-A--A----ACCTTG------------CAC--T-CT-AAAC-TA--GGCTA-A----AACAC----TCTCAACT-A----------GGC----CAGC-CTATA-AAC-C------AG----G----G------TATAC---ACCAGCCC------G---T------GCTC-----T--A---A-A-CC-GG---GC-------TA-----G---------------------GACCCCTGCTGAGGTC-AAACCGCT
gi|14 : actgcttgttatagcatagaggaacattggatgagcaaatT--TCAAACCTGT-GTTCA----ACTG---TGC-TTA--A-AC--------------TC----TGCTTTAATA--CAT--AAGCTT--AAACCCTGAGCTATTCTT--ACCAATCTTG-GATTTTATGCACTGGAATT---T-----ATTGC-TTGGA--TTTA-GCGAT-ACACA
gi|14 : tccGGATTTTATGCAC-----TGGAATTTATTGCTTGGATTTAGCGAT-ACACATTCCGAGACTTTAAAAGTGCTACATTttccgagactttaaaagtgctacatt
gi|15 : tccttcaaacctgtgttcaactgtgcttaaactctgctttaatacataagcttaaaccctgagctattcttaccaatcttT--TCAAACCTGT-GTTCA----ACTG---TGC-TTAAAT-GC--------------TG----TGCTT-AATA--CAT--AAGCTT--AAACCCTGAGCTATTCTT--ACCAATCTTG-GATTTTATGCACTGGAATT---T-----A-TGCCTTGGA--TTTA-GCGAT-ACACA
gi|15 : ccGGATTTTATGCAC-----TGGAATTTATGCCTTGGATTTAGCGAT-ACACATTCCGAGACTTTAAAAGTGCTACATTttccgagactttaaaagtgctacatt
gi|17 : ccttcaaacctgtgttcaactgtgcttaaatgctgtgcttaatacataagcttaaaccctgagctattcttaccaatcttCCAACC------G---C------ACTA-----T--GTTGA-A-CC-AG---CC--------A-----T-----------------C---TACCCCACCT---------ACC-CTCGA-CC---AATCAGAA--------------ATGA-CCTCAC--------AAAAA-----GTGCACTT-AG---TTA---AACCAGCC--ATAGA------GG--------C--------AC-CT
gi|18 : acctCACTTT-CACTCAAAA-----GTGCACTC-AG---TTG----ACCTCCC--ATTGG------GG--------tatacta
gi|2 : CACTCAGAATCCT-ACA-AC-CCAGGCTTG--GG-TTTT-TTTTCCCGGAGATTC-AGAGGCACAAGATGT--CACGGGA-CTGGAA-CTGGGCCTCT-CAA------CCCT-CCAGAATG-------------AGCCCTTCCGGCCA--GACAA--GAAGACTTTGCGATTCATTAC---CACCGACATAAGA-CGGGATTGTTA--CGCATTAATGTGCTGCGTAATGAGATTGGAAATCATACCACCGTCCTGCTGAAGAAGCTGGAAGACCTGACGGGGAAAAATCTAGATCCCTAGGAA-GAACTATCACTCCAGATTCGGCTA-TAACCCGTGCTCAACTTGTTGCGTGTGAAACAGGGCATTGGTCGCCG----GTATTGCCCCCAGAATAG------------CAGATTTCCCGCA-ACCAGTAAGAAAGATTTT-----CGCA--GAC---AGTAAGAAATCGCCGA----------T-----A-ACCAGAGAAAGAAAA-CA-AACAACGGGATCCCTTGC-ACAAAGTGCGGGAAATT-GGACACTGGATCAAGTGACTGTCCGGAAAAGAA-AAGCGGAG-TCGATGAGATGATTGGGCCCCGTAACTGGCTCAAAACC-CGCTTGAAGAGAGAGTACAAACCGCTAGAGA-GT----CCCCT-CCGC----------ACTACTGAAGAA--CGCCTTAAAAAGAAGA-GCAACTGAGCACG-AAGTAA----A-AAAAACTTGAACTGTTT-TTTTAT-GCTGAACTGTTT-TACATTGATAA-----C----TGAA-CTGTT--TTTATGCTG--TTTAATAA-ACTGGTTTGAGTTG--T-----------------------TGCTTTAATAAACATGTAAACTT--AAAACCTGGTGTAGTCTTT-ATTATGCT---GAGCGAATACAC-AGATTTAAACAAGGAA-TAGACTGGATTTTTATGCGATGATACAGGAATACACAGGA--ACA----C-----TGGATTTTATGC----GAT----CGATAACACATTCC-------TAAGTGTGATACA---------TTT-ATGACGTCAATAATG----------TCTCTCAAG----GTCCGATT--TTTCAGAAATAG-CATTCAGC-------------CT----T----TTTCACG--A-ATCA----A------------------GC-------GAAG-TA--GATCC-ACGGCAATAT----A--------------------GC----CAAC-TTATATAAC-C-------G----C----C------TCTAA---A-CCAGCC------G---T------GCTA-----T--A---ATA-CC-GGTACTC-------TAAACCGG-----------------CTAGGACCCCTGCTGGGGTC-AAAC----TGA-CC---g
gi|2 : ttttcacattttacacctgcaaccagagaacatggctctagatgaacaggctagaattcgtggacagagtcagaagaagtgaataacatggtacgaaaaagacgggaatgcaacaggagatttcttggcgaagcaaacagttagacagggtacatgagcttacattggcacagcagctgataaaaggcaaggactgaggatttctaatacgctT--A-T--A----ACC---------------GCC--T-CT-AAAC-CA--G-CCGTGCTATAATACCGGTACT---CT-A----------AAC----CGGC--TAGG-ACC-CCTGCTGGG----G----T------CA-AACTGACCCGTCT------A---T------GCTA-----TTTG---A-A-CC-G----CC-------CA-----T-----------------C---GAGCCCTG---------AAAACGCTTGAACCTCAAGTCAGCAAGAACCGCATCTGCTTGA-CCTCATTTGTCA-TAAAAACAACGGTGCACTCAAG---TTGTGAAACCTCCCCTATGGA------GG--------cgtctatgctatttgaaccgcccatcgagccctgaaaacgcttgaacctcaagtcagcaagaaccgcatctgcttgacctcatttgtcataaaaacaacggtgcactcaagttgtgaaacctcccctatggagggcggaggctactaa
gi|3 : ttttcacattttacacctgcaaccagagaacatggctctagatgaacaggctagaattcgtggacagagtcagaagaagtgaataacatggtacgaaaaagacgggaatgcaacaggagatttcttggcgaagcaaacagttagacagggtacatgagcttacattggcacagcagctgataaaaggcaaggactgaggatttctaatacgctcactcagaatcctacaacccaggcttgggttttttttcccggagattcagaggcacaagatgtcacgggactggaactgggcctctcaaccctccagaatgagcccttccggccagacaagaagactttgcgattcattaccaccgacataagacgggattgttacgcattaatgtgctgcgtaatgagattggaaatcataccaccgtcctgctgaagaagctggaagacctgacggggaaaaatctagatccctaggaagaactatcactccagattcggctataacccgtgctcaacttgttgcgtgtgaaacagggcattggtcgccggtattgcccccagaatagcagatttcccgcaaccagtaagaaagattttcgcagacagtaagaaatcgccgataaccagagaaagaaaacaaacaacgggatcccttgcacaaagtgcgggaaattggacactggatcaagtgactgtccggaaaagaaaagcggagtcgatgagatgattgggccccgtaactggctcaaaacccgcttgaagagagagtacaaaccgctagagagtcccctccgcactactgaagaacgccttaaaaagaagagcaactgagcacgaagtaaaaaaaacttgaactgtttttttatgctgaactgttttacattgataactgaactgtttttatgctgtttaataaactggtttgagttgttgctttaataaacatgtaaacttaaaacctggtgtagtctttattatgctgagcgaatacacagatttaaacaaggaatagactggatttttatgcgatgatacaggaatacacaggaacactggattttatgcgatcgataacacattcctaagtgtgatacatttatgacgtcaataatgtctctcaaggtccgatttttcagaaatagcattcagcctttttcacgaatcaagcgaagtagatccacggcaatatagccaacttaCACTCAGAATCCT-ACAGAC-CCAGGCTTG--GGATGTT-TTCCCCCGGAGATTCCAGAGTCACAAGATGT--AACAGGG-CTGGAA-CTGGGGCTCTACAA------CCCT-C-AGAATG--------------AACCT-CCGAACCTGAACAA-AGAAGATTTTGCGAT-CATTAC---CACG-ACACTAGA-CGGGATCGTTAACCGCATTAATGTGCTGAGTAATGAGATTGGAAATCATACCACAGTCCTACTGAAGAAGCTGGAAGAGCTGACGGGTAAAAA-------GCCTAGGAA-GGAATA-CACCTCAGATTACGCTACTAAACCGTGTTACACTTG-TG---GACAAACAGGACATTATTCGCCG----G-ATTGCCCACAGAA-AA------------CAGATTATCCGCAGACCAGTAAGAAA----T------T-----GGC---AG------ATTCCCAC----------C-----AGACT--AGCAAGAAAACCA-AACAAAGGGAT-CCTTGCTAC-AAGTGCGGAAAATTAGGACACTGGATC-AGTGAACGTCCTG--AAGAACAAGCGGAGATAGCCGAGATGATT-GGTCCCGTACCTGGCTCAAAACCCACTGTGAAGAGAGAGTACAAACCGTTAGAGATGTGGAATCCGC-CCGTACCTAAACAAACCAGTGAAGAAC-TACC-G-AAAAGAAGAAGAAACTTAGC-CGAAAGTAA----ATA-----CGGGACTGTGC-T--------TGAACTGTTTTTA---TGCTTA-----T----TCAA-CTATT--TAAAAACTGT-TTTAAAAACATTG---TGCATTG--T-TC--------------TA----TGCTTTAATAAACATGTAAACTT--AAACCTTGTGTTATTCTTT-A--------------TTATGCACAGGATTT---C-----A-TACACAGGA--TTTA----AT-ACACAGGAATACATAGGATTTTA----C-----TGGATTTTATCCCTTGGAT----CGAT-ACACATTCC-------TAAGTGTGCTACATTT------TTT-TTGACGTC-ATAATGC---------TCTC-CAAGTCCCAACCGAATGACGTCA-TAATAA--A------------------GCT----C----CTGTGCT--A-A--A----AC------------------C--T-CT-AAAC-TA--GGCCA-GCGGCAATAC----ACT---CT-A----------GGC----CGAC-CTATA-AAC-C------GG----G----C------TGTAA---ACCCGGCC------A---T------GCTA-----T--A---A-A-CA-GG---CC-------TA-----G---------------------GACCCCTGCTGGGGTC-AAATCGCTTGA-CC---AATCAGCA--------------TTGA-CCTCATTTG-CA-TAAAAA-----GTGCACTC-AG---TTG---ACCTCCCT--ATGGA------GG--------C--------GC-TTG-ACC--------------------ACTCCG---TTGACCCCGCCAATCAGCGTCCTAGATATTGAACTCCCTAT-CGAAGCGGGTTATACTACTgcggaggctactaa
gi|4 : GGCTTG--GGATTAT-TTT-CCCGAACATCCCGGAGTCACAAGATGT--AACGGGA-CTGGAA-CTGGGCCTCTACAA------CACT-C-AGAATGTATCG-------GAGACC--CCGGTCATGAACAA-AGAAGATTTTGCGAT-CATTTC---CACT-ACACTAGA-CGGGATCGTTAACCGCATTAATGTGCTGAGTGACGAAATTGGAAATCATACCACAATCCTACTGAAGAAGCTGGAAGAGCTGACGCCTAAAAA-------CCCCAGGAA-GGAATA-CGTTCCCAATTACGCTACTAACCCGTGCTACACTTG-TG---GAGAAACAGGACATTGGTCGCCG----G-ATTGCCCACAGAA-AA------------CAGATTTCCCGCAGACCAGTAAGAAA----TC-------------C---AG------AT----------------------AAAAC--A-----AAAACCA-AACAAAAGGAT-CCTTGCTAC-AAGTGCGGAAAATTAGGACACTGGATC-AGTGACTGTCCAA--AAGAACAAGCGGAGATAGCTGCGATGATT-CCTCCAGTACCTGACTCAAAACCCCCTGTGA--AGAGAGTACAAACAGTTAGAGATGTGGAATCCGC-CCGCACCTAAACAAACCACTGAAGAAC-CACC-GAAAAAGAA---GAAACTCAGC-AAAAAGT-A----A-A-----CTGGACTGTGCTT----T-G-TGAACTGTTTTTA---TGCTTA-----C----TGAA-CTGTTACTGTGAACTGT-TTAAAac
gi|5 : GGGTTTTA----TGCAG-CGGATTTTATGCCTTGGAT----CGAT-ACACATTCC-------TACACGTACTACATTT------TTT-TTTACGTC-ATAATGC------ACTTCTC-CAAGGCTAG-CCGAATGACGTCA-CAATAG------AGCTCGCGCTCCTGTGCTAAAAC----CTGCACTCTA-A--ACTAGGCCAACGGCAATTTGATACAC--T-CT-CAAC-TA--GGCCA--------TAC----GCT---CT-AAACCCGGCCGGGCTCACCGGC-CTCTA-AACTC------GGCCATG----C------TATAA---TCCCGACC------G---G------GCTA-----T--A---A-A-CCCGG---CCGGAC---TA-----G---------------------GACCCCTGCTGTGGTC-AAACCTCTTGA-CC---AATCAGCA--------------TTGA-CCTCATTTG-CA-TAAAAA-----GTGCACTC-AG---TTG---AACTCGCT--ATGGAAACCGGGG--------CCAGGTCAAGC-TTG-ACCCCCACTGCGCATGTGCGATGACCCCGCCATTGACCCAGCCAATCAGCGTCCTAGATATTGAACTCGCCAT-GGAGGCCGGTTATACTACT
gi|6 : CCAGAATCCTTACAGACTCCAGGCTTCATGGATTTTATTTTTCCTGACA---------CACAGGATGGCAAACCGGATCTGGAAACTAGGTCTCTATAATCTCCTCACTAC-AGAATGCATCGCGAACTAGAGCCCT-CC--CACTGA-CAAGATAACATTTC-CGCT--ATTTCACATACC-ACTCTAGAACAAGATAGTAAACAAGATTAATGGACTGGTCGAGGATATTGGTAAtccgt
gi|7 : gctataaaaatcaggccagatgtcctacacttcaatccgacttcagacagtgagcagacaacataggcacagaaacgggctagattttgtgcgacagaagttcagaagaaagtcaatagatagtacacacttcagtatcagttgggtcccagaaatatttacttgagtgaaagaggacagatatgagccttacatgctggcacatccagctaaaaaaggcgcaggaacaagccaatggttatatagGAAAAAGATGGAAGAGCTGACAGCGAAAAA--------------------------CTCCAGA-TACGCCACT-ACCCGAGCTACACTTG-TG---GAGAAATAGGCCATT-GTCACCGGATTG-ATTGCCTGCAGAA-AACTAAGAAAACCTCAGATTCCCCGCAGACCAGTAAGAAA----TC-----CCGGTTGTC---AG------ATTCCCAG----------C-----AGACC--AGCAAGAAAACCA-AAGAAAA--AT-CCTTGCTAC-AAGTGCGG-AAACTAGGACACTGGATC-AGTAAC-GTCCGG--AAGAACAAGCCGAGATAGATGCGATGA-T-CCCCCCGTACCTGGCTCAAAACCGCCCATCAAGAGATAGTACAAACCGTTAGAGATGTGGAA-CCGCGCCACACCTAAACAACCTACTGAA-AACACGCA-GAAAAAAAAGATGAAGCTTAGC-CGAAAGTAA----A-
gi|8 : GGATTT---C-----A-TGCAC-GGT--TTTA---------------ATAC-CAGGATTTTA----TACCGTTGGATTTTA-------G------TGAT-ACACATTCC-------TAAAAGTGCTA-ATTTAAGGAATTTGTTGACGTC-A-AATACTTTTC-ACTTCTC----GTCCA--CCGCTTGATG-CA-CAATAGCCAGT-AGCTCGT--------GCT----CCAAACTGTGCT--A-A--A----ACC---------------TGC--CACTCAAAC-TA--GGCTA-A-ATCAATGC----ACT--------------------------GCGCTCTC-AAC-T------AG----GCAGCC------TAT-A---ACCCGG-------------------GCTA-----T--A---A-A-CC-GG---GC-------TG-----G-----------------C---GA-CCCTGCTGGGATCAAAACAGCTTGA-C-----ACCTAC---------------TTGACCCCCACTGA-CA-TG---------------TC-CG---ATG---A--CG-CC--AT-------------------C--------A--TTG-ACC--------------------A----------------GCAAACCAGCGTCCTAGATATTGAAA-CCCCATCGGAGG-CGTTTATACTACTtgc
gi|9 : gtaCT----C----CTGTGCT--A-A--A----ACC---------------TGCACT-CT-AAAC-TATAGGCCA-A-GTCAAAAC----ACTGCGCT-ATCAACCC---GGC----CGGG-CTC----AC-C------GG----G----T------TATAA---ACCCGGCCTCACCAG----------GCTA-----T--A---A-ATCC-GG---TC-------TA-----G-----------------ca
gi|9 : GCT--ATA--A----ATC---------------CGG--T-CT-AGATATA--AACCA---GGC----C----GGG---CT-A----------GCC----CAGC-CTCTA-AAC-CC-----GGCTGTG----C------TATAA---ACCCGGCC------G---G------GCTA--------------------G---CC-------CG-----G-----------------C---GACCCCTACTGGGGTC-AAACTGC--G---C---ACTC--CG--------------TTGA-CCCC-------------AA-----GCGTCCT--AGATATTG---AACCGGCC--ATGGA------GGCCCGAAACC--------GC-TTG-ACC--------------------AATCatataaaccaggccgggctagcccagcctctaaacccggctgtgctataaacccggccgggctagcccggcgacccctactggggtcaaactgcgcactccgttgaccccaagcgtcctagatattgaaccggccatggaggcccgaaaccgcttgaccaatcagaagtctccctgctttaccttatttgcataaaaagtgcactcagttgaaccgcctatgtattggcgttatacca
gi|9 : ctcctgtgctaaaacctgcactctaaactataggccaagtcaaaacactgcgctatcaacccggccgggctcaccgggttataaacccggcctcaccag----CTGTGCT--ATA--A----ACC---------------CGG--C-C--GGGC-TA--GCCCG-GCGAC----------CC---CT-ACT--------GG------GGT-C---A-AAC-T------GC----G----CACTCCGT-TGA---CCCCAAGC------G---T------CCTAGATATT--G---A-A-CC-GG---CCA------TG-----G-----------------A---GGCCC--------G---AAACCGCTTGA-CC---AATCAGAAGTCTCCCTGC----TTTA-CCTTATTTG-CA-TAAAAA-----GTGCACTC-AG---TTG---AACCGCCT--ATGTATT----GG--------C--------GT-TAT-ACC--------------------Aagaagtctccctgctttaccttatttgcataaaaagtgcactcagttgaaccgcctatgtattggcgttatacca
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|16 ): GATGAAAAATGGAATAAGACAAGTGGGAAGAAGAAGACAGGGAAAAGGGGACGAATGCAACGAGATGTTCTTGAGCGCAATGATAGACAGGAAGGTACAGGAGGCTTACATGGCACAGGCAGCTGAAAAAGGGCAAGAC
Alignments
lowQualScore : 1 1 11 1 11 222222 444444444444 11 111 22222222 111 111 111111 333333333333 66666666666666666666 111 3333333333333333 1111 22222 33333333 111 3333333333 11 111 66666666666666666666666666 11 2222222222222222 22222222222222222 2222 5555555555 2222 3333333 222222222 3333333 111111 222222 44444444444444444 4444444444444444444444 8888888888888888888888888888888888888888888888888888888888888888888888888888888888888888 22222222222222222 111111111111 5555555555555555555555555555 55555555555555 11111 111 3333333333333333333333333 88888888888888888888888888888888888888 1
lowQualScore : 0 2 0 11 0 8 3 22 66 0 11 8 8 1 0 333333 0 8 8 333333333333 0 88 444 3 88 8 1 444 8 4 8 0 1 1 22 88888888 6 222 1 3 6 111 1 88 555555 6 444444444444 1 3 88888888888888888888 1 000 77 0 5555555555555555 77 3 5 2 5 5 3 1 5 0 66 1 1 77 0 4 0 1 0 5 5 0 0 1 5 66 5 8 1 9999 8 2222 5 88888 0 8 22222222 0 8 444 0000000000 8 77 44 5 1 77 99 111 9 55555555555555555555555555 7 00 99 1 1 2222222222222222 3 6 88888888888888888 99 6666 6 3 2222222222 0 999 4 4444 5 7777777 1 666666666 8 6 9999999 2 555555 1 6 000000 3 1 55555555555555555 2 55 8 55 8888 1111111111111111111111 4 4 55 0 7777777777777777777777777777777777777777777777777777777777777777777777777777777777777777 777 3 55555555555555555 333333333333 3 3 0 0000000000000000000000000000 66 0 4 4 777 0 11111111111111 5 44 4 11111 4 777 222 4 88 66 0 1111111111111111111111111 5 6 22222222222222222222222222222222222222 7 3 6
lowQualScore : . . . .. . . . .. .. . .. . . . . ...... . . . ............ . .. ... . .. . . ... . . . . . . .. ........ . ... . . . ... . .. ...... . ............ . . .................... . ... .. . ................ .. . . . . . . . . . .. . . .. . . . . . . . . . . . .. . . . .... . .... . ..... . . ........ . . ... .......... . .. .. . . .. .. ... . .......................... . .. .. . . ................ . . ................. .. .... . . .......... . ... . .... . ....... . ......... . . ....... . ...... . . ...... . . ................. . .. . .. .... ...................... . . .. . ........................................................................................ ... . ................. ............ . . . ............................ .. . . . ... . .............. . .. . ..... . ... ... . .. .. . ......................... . . ...................................... . . .
lowQualScore : 0 5 0 00 8 0 6 22 44 6 00 0 0 4 8 000000 6 0 0 666666666666 6 66 666 8 88 0 4 000 0 6 0 8 4 4 00 33333333 7 888 0 2 7 777 5 88 000000 7 222222222222 7 0 66666666666666666666 4 000 99 1 1111111111111111 99 0 7 3 7 7 9 7 7 1 99 0 3 11 7 3 7 7 7 3 7 1 7 7 7 44 0 6 0 6666 7 1111 7 33333 8 0 00000000 8 8 000 2222222222 0 99 99 7 3 00 22 777 8 33333333333333333333333333 3 00 22 0 4 0000000000000000 2 0 55555555555555555 22 7777 7 2 4444444444 6 333 3 3333 7 1111111 9 555555555 0 7 0000000 5 555555 0 7 777777 2 0 11111111111111111 0 55 0 55 5555 4444444444444444444444 0 0 55 7 3333333333333333333333333333333333333333333333333333333333333333333333333333333333333333 000 5 88888888888888888 222222222222 6 6 5 4444444444444444444444444444 66 7 0 4 888 4 22222222222222 0 66 4 11111 4 888 222 4 66 11 1 3333333333333333333333333 7 7 22222222222222222222222222222222222222 3 3 7
consensus : CACCCAGAATCCT-ACAGAC-CCAGGCTTG--GGATTTT-TTTTCCCGGACATCCCGGAGTCACAAGATGT--AACGGGA-CTGGAA-CTGGGCCTCTACAA------CACT-C-AGAATGCATCG-------GAGACCT-CCGGCCATGAACAA-AGAAGATTTTGCGAT-CATTTC---CACC-ACGCTAGA-CGGGATCGTTAACCGCATTAATGTGCTGAGTGACGAGATTGGAAATCATACCACAATCCTACTGAAGAAGCTGGAAGAGCTGACGGNNAAAAA-------CCCCAGGAA-GGAATA-CGCTCCAGATTACGCTACTAACCCGTGCTACACTTG-TG---GAGAAACAGGACATTGGTCGCCG----G-ATTGCCCACAGAA-AA------------CAGATTCCCCGCAGACCAGTAAGAAA-----T-C-----C--G-T-GTC---AG--ATTCCCAG----------C-----AGACC--AGCAAGAAAACCA-AACAAAAGGAT-CCTTGCTAC-AAGTGCGGAAAACTAGGACACTGGATC-AGTGACTGTCCGG--AAGAACAAGCNGAGATAGATGCGATGATT-CCCCCCGTACCTGGCTCAAAACCGCCCGTGAAGAGAGAGTACAAACCGTTAGAGATGTGGAACCCGC-CCGCACCTAAACAAACCACTGAAGAAC-CGCC-GAAAAAGAAGANGAAACTNAGC-CGAAAGTAA----A-A-----CTGGACTGTGC-T----T-G-TGAACTGTTTNTA---TGCTTA-----C----TGAA-CTGTT--TNAAAACTGT-TTTAATAAAC--TG---TGCATTG--T-TC--------------TA----TGCTTTAATAAACATGTAAACTT--AAACCCTGNGCTATTCTTT-ACCAANCTTG-GATTTTATGCACTGGATTT---C-----A-TGCACTGGA--TTTA-GCGAT-ACACAGGAATACACAGGATTTTA----C-----TGGATTTTATGCCTTGGAT----CGAT-ACACATTCC-------TAAAAGTGCTACATTT------TTT-TTGACGTC-ATAATGC------ACTTCTCCAAGT-C-CAGCCGANTGACGTCA-CAATAGCCAGT-AGCTCGCGCT------------C----CTGCGCT--A-A--A----ACC---------------CGC--T-CT-AAAC-TA--GGCCA-ACGGCAATAC----GC-----T---CT-A----------GGC----CGGC-CTCTAA-AC-C-------GG----G----C------TATAA---ACCCGGCC------G---T------GCTA-----T--A---AA-CC-GGCC-------TAG-----------------CGACCCCTGCTGGGGTC-AAACCGCTTGA-CC---AATCAGCA--------------TTGA-CCTCATTTG-CA-TAAAAA-----GTGCACTC-AG---TTG---AAC-CGCCC--ATGGA------GG--------C--------GC-TTG-ACC--------------------ACTCCG---TTGA-CCC-GCCAATCAGCGTCCTAGATATTGAACTCCCCAT-GGAGGCCGGTTATACTACT
Reference ( family-1393 ) : CACCCAGAATCCT-ACAGAC-CCAGGCTTG--GGATTTT-TTTTCCCGGACATCCCGGAGTCACAAGATGT--AACGGGA-CTGGAA-CTGGGCCTCTACAA------CACT-C-AGAATGCATCG-------GAGACCT-CCGGCCATGAACAA-AGAAGATTTTGCGAT-CATTTC---CACC-ACGCTAGA-CGGGATCGTTAACCGCATTAATGTGCTGAGTGACGAGATTGGAAATCATACCACAATCCTACTGAAGAAGCTGGAAGAGCTGACGGNNAAAAA-------CCCCAGGAA-GGAATA-CGCTCCAGATTACGCTACTAACCCGTGCTACACTTG-TG---GAGAAACAGGACATTGGTCGCCG----G-ATTGCCCACAGAA-AA------------CAGATTCCCCGCAGACCAGTAAGAAA-----T-C-----C--G---GTC---AG--ATTCCCAG----------C-----AGACC--AGCAAGAAAACCA-AACAAAAGGAT-CCTTGCTAC-AAGTGCGGAAAACTAGGACACTGGATC-AGTGACTGTCCGG--AAGAACAAGCNGAGATAGATGCGATGATT-CCCCCCGTACCTGGCTCAAAACCGCCCGTGAAGAGAGAGTACAAACCGTTAGAGATGTGGAACCCGC-CCGCACCTAAACAAACCACTGAAGAAC-CGCC-GAAAAAGAAGANGAAACTNAGC-CGAAAGTAA----A-A-----CTGGACTGTGC-T----T-G-TGAACTGTTTNTA---TGCTTA-----C----TGAA-CTGTT--TNAAAACTGT-TTTAATAAAC--TG---TGCATTG--T-TC--------------TA----TGCTTTAATAAACATGTAAACTT--AAACCCTGNGCTATTCTTT-ACCAANCTTG-GATTTTATGCACTGGATTT---C-----A-TGCACTGGA--TTTA-GCGAT-ACACAGGAATACACAGGATTTTA----C-----TGGATTTTATGCCTTGGAT----CGAT-ACACATTCC-------TAAAAGTGCTACATTT------TTT-TTGACGTC-ATAATGC------ACTTCTCCAAGT-C-CAGCCGANTGACGTCA-CAATAGCCAGT-AGCTCGCGCT------------C----CTGCGCT--A-A--A----ACC---------------CGC--T-CT-AAAC-TA--GGCCA-ACGGCAATAC----GC-----T---CT-A----------GGC----CGGC-CTNTAA-AC-C-------GG----G----C------TATAA---ACCCGGCC------G---T------GCTA-----T--A---AA-CC-GGCC-------TAG-----------------CGACCCCTGCTGGGGTC-AAACCGCTTGA-CC---AATCAGCA--------------TTGA-CCTCATTTG-CA-TAAAAA-----GTGCACTC-AG---TTG---AAC-CGCCC--ATGGA------GG--------C--------GC-TTG-ACC--------------------ACTCCG---TTGA-CCC-GCCAATCAGCGTCCTAGATATTGAACTCCCCAT-GGAGGCCGGTTATACTACT
gi|1 : ACCCAGAATATG-ACAGAC-CCAGGCTTA--GGATTTT-TTT-CCCGGACTTCCCGGAGTCACCGAATGT--AACGGGA-CTGGAA-CTGGGTCTCTACAA------CACT-C-AGAATGCATTG-------GAAACC--ACAGCCATGAACAA-AGAAGATTTTGCGAA-CATTTC---CACC-ATGCTAGA-CGGGATCGTTAACCGCATTAATGTGCTGAGTGACGAAATTGGAAATCATACCAGAATCCTG-TAAAGAAGCTGGAAGAGCTGACAGCCAAAAA-------ACCCAGGAA-GGAATA-CGTCCCCGATTACGCTACTAACCCGTGCTACACCTG-TG---GAGCAACAGGACATTAATCACCG----G-ATTGCCCACAGAA-AA------------CATATTCCCCGCAAACCAGTAAGAAA-----T-C-----CT-GGTCGTC---AG--ATTCCCAGAGTAAGAATTCACAGAAGACC--AACAAGAAAACTA-AACAAAAGAAT-CCTTGCTAC-AAGTGCGGAAAACTAGGACACTGGATC-AGTGACTGTCCGG--AAGAACAAGCTGAGATAGCTGCGATGATT-CCTCCAGTACCTGGCTCAAAACCGCCCGTGAAGAGAGAGTA-ACACCGTTAGAGATGGGGAACCCAC-CCGCACCTAAACAAACCAGTGAAAAAC-CACC-G-AAAAGAAGAAGATACTCAGC-AAAAAAT-A----A-A-----CTGGACTGTGC-T----TAG-TGAACTGTTTGTA---TGCTTAGTGAGCACTGTGAA-CTGTT--TAAAAACTGTGCTTAGTGAAA--TG---TGCATTG--T-TCTTGTTTCAAATGTTTA----TGCTTTAATAAACATGTAAACTTAAAAACCTTGTGTTATTATTTCACCCAGCTTGTGA-TTTAT-TA-TGGATTT---C-----A------TGGA--TTTA----AT-ACACAGGATTTCATAGGATGTTA----------TGCACTGCATG--TT--AT----CGA------ATTTT-------TAACAGTGCAACA-----------T-TTGACGTC-ATAATGC------ACTTCTCCAAGT-CAAAACCGCTTGACGTCA-CAATGGCCAGT-AGCTCGCGCT------------CCACGCTGTGCT--A-A--A----ATCTG-------------CAC--T-CT-AAAC-TA--GGCTA-AT-ACACTGC----GC-----C---CTCAACCC------GGC----CGGG-CTC----AC-A-------GG----G----C------TATAA---ACCCGGCC------GGGCTCACAGGGCTA-----T--A---CA-CC-GGCCGTGCTATTAACCGATCGGGCTAACCGTCGACCCTTGCT-GGGTC-AACCCGCTTGA-CC---AATCAGAA--------------TTGA-CATCATTTG-CA-TAAAAA-----TTGCACTC--G---TTGA--AAC-CACCC--ATGGA------GG--------C--------GCGTTATACT--------------------ACT
gi|10 : ggctataaaagcagagtccccgctttcacttttcacatcgacttcagaccttgacctgagaacatggctcagaaacagctataattcgtggacagggctcagaagaaagtggataacatgatacagaaacagacagggcttcagaaagatgtcttgaaagaagaggacagacaagaggtacaggaggcttacattgcacatcagctgaaaaaggcgaagactgaggagtatctacctCCCCGCAGACCAGTAAGAAA-----T-C-----CCGGTT-GTC---AG--ATTCCCAG----------C-----AGACC--AGCAAGAAA-CCA-AAGAAAAGGAT-CCTTGCTAC-AAGTGCGGAAA-CTAGGACACTGGATC-AGTAACTGTCCGG--AAGAACAAGCCGAGATAGATGCGATGAT--CCCCCCGTACCTGGCTCAAAACCGCCCATCAAGAGATAGTACAAACCGTTAGAGATGTGGAACCCGC-CCACACCTAAACAACCTACTGAAAAAC-CGCA-GAAAAAGAAGATGAGCTTTAGC-C--AAGTTA----A-A-----
gi|11 : aaatcatccG--AAGAACAAGCTGAGATAGAAGCAATGATG-TCCCCGGTTCC----------CTGC-----AAGAGAGGGTACAAACCTTGAGAGATGTGGAAACCTC-CAGCGCCTAAA-AGACCACTGAAGAAC-CGCA-GAAAAAGAAGAGGAAACTAAGT-AGAAATTAATGTTA-AACT--CTGGAC---GG-T----T-A-TAAACTG--TGAA---CTCTTA-----C----AAAAGCTGT------AAACTGT-T---ATAAGC--TG---TGAACTG--TGTT--------------TATGGGTGGTTTAAAAAAAATGAAGATTT--tgcttga
gi|12 : GGAACCATACAAGAATCCTACTCAAGAAGCTGGGAGAGCTGAAGTAGAAAAA-------CCCCATGAATGAAATA----TCCA----------CTAACCTCTGCTGCACTTG-TA------AAACAG--------------------ATTGCCCACAAAA-AA------------C------------------CAAGAAA-----A-C-----CT-G---GTCTCTAA--ATTCTTCG----------C-----AGAAA--ACCAAGAAAACTAGAACGAA-GGAC-CCTTGCTAC-AAGTGCGGTAAACTTGGACATTGGATC-AACAATTGTCCGG--AAGAACAAGC
gi|13 : -ATAATGCTTTTTCACTTCTCCAAGT-C-CAGCCGAATGACGTCA-CAATAGCCAGT-AGCTCGCGCT------------T----CTGTGCT--A-A--A----ACCTTG------------CAC--T-CT-AAAC-TA--GGCTA-A----AACAC----TC-----TCAACT-A----------GGC----CAGC-CTATAA-AC-C-------AG----G----G------TATAC---ACCAGCCC------G---T------GCTC-----T--A---AA-CC-GGGC-------TAG------------------GACCCCTGCTGAGGTC-AAACCGCT
gi|14 : actgcttgttatagcatagaggaacattggatgagcaaatT--TCAAACCTGT-GTTCA---AC--TG---TGC-TTA--A-AC--------------TC----TGCTTTAATA--CAT--AAGCTT--AAACCCTGAGCTATTCTT--ACCAATCTTG-GATTTTATGCACTGGAATT---T-----ATTGC-TTGGA--TTTA-GCGAT-ACACA
gi|14 : tccGGATTTTATGCAC-----TGGAATTTATTGCTTGGATTTAGCGAT-ACACATTCCGAGACTTTAAAAGTGCTACATTttccgagactttaaaagtgctacatt
gi|15 : tccttcaaacctgtgttcaactgtgcttaaactctgctttaatacataagcttaaaccctgagctattcttaccaatcttT--TCAAACCTGT-GTTCA---AC--TG---TGC-TTAAAT-GC--------------TG----TGCTT-AATA--CAT--AAGCTT--AAACCCTGAGCTATTCTT--ACCAATCTTG-GATTTTATGCACTGGAATT---T-----A-TGCCTTGGA--TTTA-GCGAT-ACACA
gi|15 : ccGGATTTTATGCAC-----TGGAATTTATGCCTTGGATTTAGCGAT-ACACATTCCGAGACTTTAAAAGTGCTACATTttccgagactttaaaagtgctacatt
gi|17 : ccttcaaacctgtgttcaactgtgcttaaatgctgtgcttaatacataagcttaaaccctgagctattcttaccaatcttCCAACC------G---C------ACTA-----T--GTTGAA-CC-AGCC--------AT-----------------CTACCCCACCT---------ACC-CTCGA-CC---AATCAGAA--------------ATGA-CCTCAC--------AAAAA-----GTGCACTT-AG---TTA---AAC-CAGCC--ATAGA------GG--------C--------AC-CT
gi|18 : acctCACTTT-CACTCAAAA-----GTGCACTC-AG---TTG----AC-CTCCC--ATTGG------GG--------tatacta
gi|2 : CACTCAGAATCCT-ACA-AC-CCAGGCTTG--GG-TTTT-TTTTCCCGGAGATTC-AGAGGCACAAGATGT--CACGGGA-CTGGAA-CTGGGCCTCT-CAA------CCCT-CCAGAATG-------------AGCCCTTCCGGCCA--GACAA--GAAGACTTTGCGATTCATTAC---CACCGACATAAGA-CGGGATTGTTA--CGCATTAATGTGCTGCGTAATGAGATTGGAAATCATACCACCGTCCTGCTGAAGAAGCTGGAAGACCTGACGGGGAAAAATCTAGATCCCTAGGAA-GAACTATCACTCCAGATTCGGCTA-TAACCCGTGCTCAACTTGTTGCGTGTGAAACAGGGCATTGGTCGCCG----GTATTGCCCCCAGAATAG------------CAGATTTCCCGCA-ACCAGTAAGAAAGATTTT-CGCAGAC--A---GTA---AGAAATCGCCGA----------T-----A-ACCAGAGAAAGAAAA-CA-AACAACGGGATCCCTTGC-ACAAAGTGCGGGAAATT-GGACACTGGATCAAGTGACTGTCCGGAAAAGAA-AAGCGGAG-TCGATGAGATGATTGGGCCCCGTAACTGGCTCAAAACC-CGCTTGAAGAGAGAGTACAAACCGCTAGAGA-GT----CCCCT-CCGC----------ACTACTGAAGAA--CGCCTTAAAAAGAAGA-GCAACTGAGCACG-AAGTAA----A-AAAAACTTGAACTGTTT-TTTTAT-GCTGAACTGTTT-TACATTGATAA-----C----TGAA-CTGTT--TTTATGCTG--TTTAATAAAC--TGGTTTGAGTTG--T-----------------------TGCTTTAATAAACATGTAAACTT--AAAACCTGGTGTAGTCTTT-ATTATGCT---GAGCGAATACAC-AGATTTAAACAAGGAA-TAGACTGGATTTTTATGCGATGATACAGGAATACACAGGA--ACA----C-----TGGATTTTATGC----GAT----CGATAACACATTCC-------TAAGTGTGATACA---------TTT-ATGACGTCAATAATG--------TCTCTCAAGGT------CCGATT--TTTCAGAAATAG-CATTCAGC-----CT------------T----TTTCACG--A-ATCA----A------------------GC-------GAAG-TA--GATCC-ACGGCAATATA---GCCAACTT---AT-A----------TAA----CCGC-CTCTAA-AC-C-------AGCCGTG----C------TATAA---TACCG---------G---T------ACTC-----T--A---AA-CC-GG-C-------TAG------------------GACCCCTGCTGGGGTC-AAAC----TGA-CC---g
gi|2 : ttttcacattttacacctgcaaccagagaacatggctctagatgaacaggctagaattcgtggacagagtcagaagaagtgaataacatggtacgaaaaagacgggaatgcaacaggagatttcttggcgaagcaaacagttagacagggtacatgagcttacattggcacagcagctgataaaaggcaaggactgaggatttctaatacgctT--A-T--A----ACC---------------GCC--T-CT-AAAC-CA--G-CCGTGCTATAATACCGGTAC-----T---CT-A----------AAC----CGGC----TAGGAC-CCCTGCTGGG----G----T------CA-AACTGACCCGTCT------A---T------GCTA-----TTTG---AA-CC-G-CC-------CAT-----------------CGAGCCCTG---------AAAACGCTTGAACCTCAAGTCAGCAAGAACCGCATCTGCTTGA-CCTCATTTGTCA-TAAAAACAACGGTGCACTCAAG---TTGTGAAAC-CTCCCCTATGGA------GG--------cgtctatgctatttgaaccgcccatcgagccctgaaaacgcttgaacctcaagtcagcaagaaccgcatctgcttgacctcatttgtcataaaaacaacggtgcactcaagttgtgaaacctcccctatggagggcggaggctactaa
gi|3 : ttttcacattttacacctgcaaccagagaacatggctctagatgaacaggctagaattcgtggacagagtcagaagaagtgaataacatggtacgaaaaagacgggaatgcaacaggagatttcttggcgaagcaaacagttagacagggtacatgagcttacattggcacagcagctgataaaaggcaaggactgaggatttctaatacgctcactcagaatcctacaacccaggcttgggttttttttcccggagattcagaggcacaagatgtcacgggactggaactgggcctctcaaccctccagaatgagcccttccggccagacaagaagactttgcgattcattaccaccgacataagacgggattgttacgcattaatgtgctgcgtaatgagattggaaatcataccaccgtcctgctgaagaagctggaagacctgacggggaaaaatctagatccctaggaagaactatcactccagattcggctataacccgtgctcaacttgttgcgtgtgaaacagggcattggtcgccggtattgcccccagaatagcagatttcccgcaaccagtaagaaagattttcgcagacagtaagaaatcgccgataaccagagaaagaaaacaaacaacgggatcccttgcacaaagtgcgggaaattggacactggatcaagtgactgtccggaaaagaaaagcggagtcgatgagatgattgggccccgtaactggctcaaaacccgcttgaagagagagtacaaaccgctagagagtcccctccgcactactgaagaacgccttaaaaagaagagcaactgagcacgaagtaaaaaaaacttgaactgtttttttatgctgaactgttttacattgataactgaactgtttttatgctgtttaataaactggtttgagttgttgctttaataaacatgtaaacttaaaacctggtgtagtctttattatgctgagcgaatacacagatttaaacaaggaatagactggatttttatgcgatgatacaggaatacacaggaacactggattttatgcgatcgataacacattcctaagtgtgatacatttatgacgtcaataatgtctctcaaggtccgatttttcagaaatagcattcagcctttttcacgaatcaagcgaagtagatccacggcaatatagccaacttaCACTCAGAATCCT-ACAGAC-CCAGGCTTG--GGATGTT-TTCCCCCGGAGATTCCAGAGTCACAAGATGT--AACAGGG-CTGGAA-CTGGGGCTCTACAA------CCCT-C-AGAATG--------------AACCT-CCGAACCTGAACAA-AGAAGATTTTGCGAT-CATTAC---CACG-ACACTAGA-CGGGATCGTTAACCGCATTAATGTGCTGAGTAATGAGATTGGAAATCATACCACAGTCCTACTGAAGAAGCTGGAAGAGCTGACGGGTAAAAA-------GCCTAGGAA-GGAATA-CACCTCAGATTACGCTACTAAACCGTGTTACACTTG-TG---GACAAACAGGACATTATTCGCCG----G-ATTGCCCACAGAA-AA------------CAGATTATCCGCAGACCAGTAAGAAA-----T-------T--G---G-C---AG--ATTCCCAC----------C-----AGACT--AGCAAGAAAACCA-AACAAAGGGAT-CCTTGCTAC-AAGTGCGGAAAATTAGGACACTGGATC-AGTGAACGTCCTG--AAGAACAAGCGGAGATAGCCGAGATGATT-GGTCCCGTACCTGGCTCAAAACCCACTGTGAAGAGAGAGTACAAACCGTTAGAGATGTGGAATCCGC-CCGTACCTAAACAAACCAGTGAAGAAC-TACC-G-AAAAGAAGAAGAAACTTAGC-CGAAAGTAA----ATA-----CGGGACTGTGC-T--------TGAACTGTTTTTA---TGCTTA-----T----TCAA-CTATT--TAAAAACTGT-TTTAA-AAACATTG---TGCATTG--T-TC--------------TA----TGCTTTAATAAACATGTAAACTT--AAACCTTGTGTTATTCTTT-A--------------TTATGCACAGGATTT---C-----A-TACACAGGA--TTTA----AT-ACACAGGAATACATAGGATTTTA----C-----TGGATTTTATCCCTTGGAT----CGAT-ACACATTCC-------TAAGTGTGCTACATTT------TTT-TTGACGTC-ATAATGC---------TCTCCAAGTCC-CAACCGAATGACGTCA-TAATAA--A----------GCT------------C----CTGTGCT--A-A--A----AC------------------C--T-CT-AAAC-TA--GGCCA-GCGGCAATAC----AC-----T---CT-A----------GGC----CGAC-CTATAA-AC-C-------GG----G----C------TGTAA---ACCCGGCC------A---T------GCTA-----T--A---AA-CA-GGCC-------TAG------------------GACCCCTGCTGGGGTC-AAATCGCTTGA-CC---AATCAGCA--------------TTGA-CCTCATTTG-CA-TAAAAA-----GTGCACTC-AG---TTG---ACC-TCCCT--ATGGA------GG--------C--------GC-TTG-ACC--------------------ACTCCG---TTGACCCC-GCCAATCAGCGTCCTAGATATTGAACTCCCTAT-CGAAGCGGGTTATACTACTgcggaggctactaa
gi|4 : GGCTTG--GGATTAT-TTT-CCCGAACATCCCGGAGTCACAAGATGT--AACGGGA-CTGGAA-CTGGGCCTCTACAA------CACT-C-AGAATGTATCG-------GAGACC--CCGGTCATGAACAA-AGAAGATTTTGCGAT-CATTTC---CACT-ACACTAGA-CGGGATCGTTAACCGCATTAATGTGCTGAGTGACGAAATTGGAAATCATACCACAATCCTACTGAAGAAGCTGGAAGAGCTGACGCCTAAAAA-------CCCCAGGAA-GGAATA-CGTTCCCAATTACGCTACTAACCCGTGCTACACTTG-TG---GAGAAACAGGACATTGGTCGCCG----G-ATTGCCCACAGAA-AA------------CAGATTTCCCGCAGACCAGTAAGAAA-----T-C--------------C---AG--AT----------------------AAAAC--A-----AAAACCA-AACAAAAGGAT-CCTTGCTAC-AAGTGCGGAAAATTAGGACACTGGATC-AGTGACTGTCCAA--AAGAACAAGCGGAGATAGCTGCGATGATT-CCTCCAGTACCTGACTCAAAACCCCCTGTGA--AGAGAGTACAAACAGTTAGAGATGTGGAATCCGC-CCGCACCTAAACAAACCACTGAAGAAC-CACC-GAAAAAGAA---GAAACTCAGC-AAAAAGT-A----A-A-----CTGGACTGTGCTT----T-G-TGAACTGTTTTTA---TGCTTA-----C----TGAA-CTGTTACTGTGAACTGT-TTAAAac
gi|5 : GGGTTTTA----TGCAG-CGGATTTTATGCCTTGGAT----CGAT-ACACATTCC-------TACACGTACTACATTT------TTT-TTTACGTC-ATAATGC------ACTTCTCCAAGG-C-TAGCCGAATGACGTCA-CAATAG------AGCTCGCGCTCCTGTGCTAAAAC----CTGCACTCTA-A--ACTAGGCCAACGGCAATTTGATACAC--T-CT-CAAC-TA--GGCCA--------TAC----GC-----T---CT-AAACCCGGCCGGGCTCACCGGC-CTCTAA-ACTC-------GGCCATG----C------TATAA---TCCCGACC------G---G------GCTA-----T--A---AA-CCCGGCCGGAC---TAG------------------GACCCCTGCTGTGGTC-AAACCTCTTGA-CC---AATCAGCA--------------TTGA-CCTCATTTG-CA-TAAAAA-----GTGCACTC-AG---TTG---AACTCG-CT--ATGGAAACCGGGG--------CCAGGTCAAGC-TTG-ACCCCCACTGCGCATGTGCGATGACCCCGCCATTGA-CCCAGCCAATCAGCGTCCTAGATATTGAACTCGCCAT-GGAGGCCGGTTATACTACT
gi|6 : CCAGAATCCTTACAGACTCCAGGCTTCATGGATTTTATTTTTCCTGACA---------CACAGGATGGCAAACCGGATCTGGAAACTAGGTCTCTATAATCTCCTCACTAC-AGAATGCATCGCGAACTAGAGCCCT-CC---CACTGACAAGATAACATTTC-CGCT--ATTTCACATACC-ACTCTAGAACAAGATAGTAAACAAGATTAATGGACTGGTCGAGGATATTGGTAAtccgt
gi|7 : gctataaaaatcaggccagatgtcctacacttcaatccgacttcagacagtgagcagacaacataggcacagaaacgggctagattttgtgcgacagaagttcagaagaaagtcaatagatagtacacacttcagtatcagttgggtcccagaaatatttacttgagtgaaagaggacagatatgagccttacatgctggcacatccagctaaaaaaggcgcaggaacaagccaatggttatatagGAAAAAGATGGAAGAGCTGACAGCGAAAAA--------------------------CTCCAGA-TACGCCACT-ACCCGAGCTACACTTG-TG---GAGAAATAGGCCATT-GTCACCGGATTG-ATTGCCTGCAGAA-AACTAAGAAAACCTCAGATTCCCCGCAGACCAGTAAGAAA-----TCC-----C--GGTTGTC---AG--ATTCCCAG----------C-----AGACC--AGCAAGAAAACCA-AAGAAAA--AT-CCTTGCTAC-AAGTGCGG-AAACTAGGACACTGGATC-AGTAAC-GTCCGG--AAGAACAAGCCGAGATAGATGCGATGA-T-CCCCCCGTACCTGGCTCAAAACCGCCCATCAAGAGATAGTACAAACCGTTAGAGATGTGGAA-CCGCGCCACACCTAAACAACCTACTGAA-AACACGCA-GAAAAAAAAGATGAAGCTTAGC-CGAAAGTAA----A-
gi|8 : GGATTT---C-----A-TGCAC-GGT--TTTA---------------ATAC-CAGGATTTTA----TACCGTTGGATTTTA-------G------TGAT-ACACATTCC-------TAAAAGTGCTA-ATTTAAGGAATTTGTTGACGTC-A-AATACTTTTC-ACTTCTC---GT-C-CA-CCGCTTGATG-CA-CAATAGCCAGT-AGCTCGTGCT------------CCAAACTGTGCT--A-A--A----ACC---------------TGC--CACTCAAAC-TA--GGCTA-A-ATCAATGC----AC-----T--------------------------GCGCTCTCA-AC-T-------AG----GCAGCC------TAT-A---ACCCGG-------------------GCTA-----T--A---AA-CC-GGGC-------TGG-----------------CGA-CCCTGCTGGGATCAAAACAGCTTGA-C-----ACCTAC---------------TTGACCCCCACTGA-CA-TG---------------TC-CG---ATG---A---CG-CC--AT-------------------C--------A--TTG-ACC--------------------A-----------------GCAAACCAGCGTCCTAGATATTGAAA-CCCCATCGGAGG-CGTTTATACTACTtgc
gi|9 : gtaCT------------C----CTGTGCT--A-A--A----ACC---------------TGCACT-CT-AAAC-TATAGGCCA-A-GTCAAAAC----AC-----TGCGCT-ATCAACCC---GGC----CGGG-CTC----AC-C-------GG----G----T------TATAA---ACCCGGCCTCACCAG----------GCTA-----T--A---AATCC-GGTC-------TAG-----------------ca
gi|9 : GCT--ATA--A----ATC---------------CGG--T-CT-AGATATA--AACCA---GGC----C----GG-----G---CT-A----------GCC----CAGC-CTCTAA-AC-CC------GGCTGTG----C------TATAA---ACCCGGCC------G---G------GCTA-------------------GCC-------CGG-----------------CGACCCCTACTGGGGTC-AAACTGC--G---C---ACTC--CG--------------TTGA-CCCC-------------AA-----GCGTCCT--AGATATTG---AAC-CGGCC--ATGGA------GGCCCGAAACC--------GC-TTG-ACC--------------------AATCatataaaccaggccgggctagcccagcctctaaacccggctgtgctataaacccggccgggctagcccggcgacccctactggggtcaaactgcgcactccgttgaccccaagcgtcctagatattgaaccggccatggaggcccgaaaccgcttgaccaatcagaagtctccctgctttaccttatttgcataaaaagtgcactcagttgaaccgcctatgtattggcgttatacca
gi|9 : ctcctgtgctaaaacctgcactctaaactataggccaagtcaaaacactgcgctatcaacccggccgggctcaccgggttataaacccggcctcaccag----CTGTGCT--ATA--A----ACC---------------CGG--C-C--GGGC-TA--GCCCG-GCGAC----------C-----C---CT-ACT--------GG------GGT-C---AA-AC-T-------GC----G----CACTCCGT-TGA---CCCCAAGC------G---T------CCTAGATATT--G---AA-CC-GGCCA------TGG-----------------AGGCCC--------G---AAACCGCTTGA-CC---AATCAGAAGTCTCCCTGC----TTTA-CCTTATTTG-CA-TAAAAA-----GTGCACTC-AG---TTG---AAC-CGCCT--ATGTATT----GG--------C--------GT-TAT-ACC--------------------Aagaagtctccctgctttaccttatttgcataaaaagtgcactcagttgaaccgcctatgtattggcgttatacca
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|16 ): GATGAAAAATGGAATAAGACAAGTGGGAAGAAGAAGACAGGGAAAAGGGGACGAATGCAACGAGATGTTCTTGAGCGCAATGATAGACAGGAAGGTACAGGAGGCTTACATGGCACAGGCAGCTGAAAAAGGGCAAGAC
Alignments
lowQualScore : 1 1 11 1 11 222222 444444444444 11 111 22222222 111 111 111111 333333333333 6666666666666666666 3333333333333333 1111 22222 33333333 111 3333333333 11 111 66666666666666666666666666 11 2222222222222222 22222222222222222 2222 5555555555 2222 3333333 222222222 3333333 111111 222222 2222 2222222222 666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666 22222222222222222 111111111111111111 66666666666666666666666666666666666666666666 55555555555555 11111 111 3333333333333333333333333 88888888888888888888888888888888888888 1
lowQualScore : 0 2 0 11 0 8 3 22 66 0 11 8 8 1 0 333333 0 8 8 333333333333 0 88 444 3 88 8 1 444 8 4 8 0 1 1 22 88888888 6 222 1 3 6 111 1 88 555555 6 444444444444 1 3 3333333333333333333 5 77 0 5555555555555555 77 3 5 2 5 5 3 1 5 0 66 1 1 77 0 4 0 1 0 5 5 0 0 1 5 66 5 8 1 9999 8 2222 5 88888 0 8 22222222 0 8 444 0000000000 8 77 44 5 1 77 99 111 9 55555555555555555555555555 7 00 99 1 1 2222222222222222 3 6 88888888888888888 99 6666 6 3 2222222222 0 999 4 4444 5 7777777 1 666666666 8 6 9999999 2 555555 1 6 000000 3 1 1111 4 8 55 1111111111 4 4 55 0 777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777 777 2 55555555555555555 777777777777777777 3 2 55555555555555555555555555555555555555555555 66 0 4 4 777 0 11111111111111 5 44 4 11111 4 777 222 4 88 66 0 1111111111111111111111111 5 6 22222222222222222222222222222222222222 7 3 6
lowQualScore : . . . .. . . . .. .. . .. . . . . ...... . . . ............ . .. ... . .. . . ... . . . . . . .. ........ . ... . . . ... . .. ...... . ............ . . ................... . .. . ................ .. . . . . . . . . . .. . . .. . . . . . . . . . . . .. . . . .... . .... . ..... . . ........ . . ... .......... . .. .. . . .. .. ... . .......................... . .. .. . . ................ . . ................. .. .... . . .......... . ... . .... . ....... . ......... . . ....... . ...... . . ...... . . .... . . .. .......... . . .. . ...................................................................................................... ... . ................. .................. . . ............................................ .. . . . ... . .............. . .. . ..... . ... ... . .. .. . ......................... . . ...................................... . . .
lowQualScore : 0 5 0 00 8 0 6 22 44 6 00 0 0 4 8 000000 6 0 0 666666666666 6 66 666 8 88 0 4 000 0 6 0 8 4 4 00 33333333 7 888 0 2 7 777 5 88 000000 7 222222222222 7 0 6666666666666666666 7 99 1 1111111111111111 99 0 7 3 7 7 9 7 7 1 99 0 3 11 7 3 7 7 7 3 7 1 7 7 7 44 0 6 0 6666 7 1111 7 33333 8 0 00000000 8 8 000 2222222222 0 99 99 7 3 00 22 777 8 33333333333333333333333333 3 00 22 0 4 0000000000000000 2 0 55555555555555555 22 7777 7 2 4444444444 6 333 3 3333 7 1111111 9 555555555 0 7 0000000 5 555555 0 7 777777 2 0 2222 0 0 55 9999999999 0 0 55 7 999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999 000 0 11111111111111111 666666666666666666 6 8 44444444444444444444444444444444444444444444 66 7 0 4 888 4 22222222222222 0 66 4 11111 4 888 222 4 66 11 1 3333333333333333333333333 7 7 22222222222222222222222222222222222222 3 3 7
consensus : CACCCAGAATCCT-ACAGAC-CCAGGCTTG--GGATTTT-TTTTCCCGGACATCCCGGAGTCACAAGATGT--AACGGGA-CTGGAA-CTGGGCCTCTACAA------CACT-C-AGAATGCATCG-------GAGACCT-CCGGCCATGAACAA-AGAAGATTTTGCGAT-CATTTC---CACC-ACGCTAGA-CGGGATCGTTAACCGCATTAATGTGCTGAGTGACGAGATTGGAAATCATACCACAATCCTACTGAAGAAGCTGGAAGAGCTGACGGNNAAAAA-------CCCCAGGAA-GGAATA-CGCTCCAGATTACGCTACTAACCCGTGCTACACTTG-TG---GAGAAACAGGACATTGGTCGCCG----G-ATTGCCCACAGAA-AA------------CAGATTCCCCGCAGACCAGTAAGAAA----T-CC-GG--T-----GTC-AG--ATTCCCAG----------C-----AGACC--AGCAAGAAAACCA-AACAAAAGGAT-CCTTGCTAC-AAGTGCGGAAAACTAGGACACTGGATC-AGTGACTGTCCGG--AAGAACAAGCNGAGATAGATGCGATGATT-CCCCCCGTACCTGGCTCAAAACCGCCCGTGAAGAGAGAGTACAAACCGTTAGAGATGTGGAACCCGC-CCGCACCTAAACAAACCACTGAAGAAC-CGCC-GAAAAAGAAGANGAAACTNAGC-CGAAAGTAA----A-A-----CTGGACTGTGC-T----T-G-TGAACTGTTTNTA---TGCTTA-----C----TGAA-CTGTT--TNAAAACTGT-TTTAATAAAC--TG---TGCATTG--T-TC--------------TA----TGCTTTAATAAACATGTAAACTT--AAACCCTGNGCTATTCTTT-ACCAANCTTG-GATTTTATGCACTGGATTT---C-----A-TGCACTGGA--TTTA-GCGAT-ACACAGGAATACACAGGATTTTA----C-----TGGATTTTATGCCTTGGAT----CGAT-ACACATTCC-------TAAAAGTGCTACATTT------TTT-TTGACGTC-ATAATGC------ACTTCTCCAAGT-C-CAGCCGANTGACGTCA-CAATAGCCAGT-AGCTCGCGCTC----CTGTGCTA-A--AACC---CGC--T-CT-AAAC-TA--GGCCA-ACGGCA-----ATAC----GC-----T-----CT-A-------GGCCG-GC------CTCTAAA-----CC-GG----G----C------T-A--------TAA---ACCCGGCC------G---T------GCTA-----T--A---A-----A-CCGGCC-------TA--------G-----------------C--------GACCCCTGCTGGGGTC-AAACCGCTTGA-CC---AATCAGCA--------------TTGA-CCTCATTTG-CA-TAAAAA-----GTGCACTC-AG---TTG---AAC-CGCCC--ATGGA------GG--------C--------GC-TTG-ACC--------------------ACTCCG---TTGA-CCC-GCCAATCAGCGTCCTAGATATTGAACTCCCCAT-GGAGGCCGGTTATACTACT
Reference ( family-1393 ) : CACCCAGAATCCT-ACAGAC-CCAGGCTTG--GGATTTT-TTTTCCCGGACATCCCGGAGTCACAAGATGT--AACGGGA-CTGGAA-CTGGGCCTCTACAA------CACT-C-AGAATGCATCG-------GAGACCT-CCGGCCATGAACAA-AGAAGATTTTGCGAT-CATTTC---CACC-ACGCTAGA-CGGGATCGTTAACCGCATTAATGTGCTGAGTGACGAGATTGGAAATCATACCACAATCCTACTGAAGAAGCTGGAAGAGCTGACGGNNAAAAA-------CCCCAGGAA-GGAATA-CGCTCCAGATTACGCTACTAACCCGTGCTACACTTG-TG---GAGAAACAGGACATTGGTCGCCG----G-ATTGCCCACAGAA-AA------------CAGATTCCCCGCAGACCAGTAAGAAA----T-CC--G--T-----GTC-AG--ATTCCCAG----------C-----AGACC--AGCAAGAAAACCA-AACAAAAGGAT-CCTTGCTAC-AAGTGCGGAAAACTAGGACACTGGATC-AGTGACTGTCCGG--AAGAACAAGCNGAGATAGATGCGATGATT-CCCCCCGTACCTGGCTCAAAACCGCCCGTGAAGAGAGAGTACAAACCGTTAGAGATGTGGAACCCGC-CCGCACCTAAACAAACCACTGAAGAAC-CGCC-GAAAAAGAAGANGAAACTNAGC-CGAAAGTAA----A-A-----CTGGACTGTGC-T----T-G-TGAACTGTTTNTA---TGCTTA-----C----TGAA-CTGTT--TNAAAACTGT-TTTAATAAAC--TG---TGCATTG--T-TC--------------TA----TGCTTTAATAAACATGTAAACTT--AAACCCTGNGCTATTCTTT-ACCAANCTTG-GATTTTATGCACTGGATTT---C-----A-TGCACTGGA--TTTA-GCGAT-ACACAGGAATACACAGGATTTTA----C-----TGGATTTTATGCCTTGGAT----CGAT-ACACATTCC-------TAAAAGTGCTACATTT------TTT-TTGACGTC-ATAATGC------ACTTCTCCAAGT-C-CAGCCGANTGACGTCA-CAATAGCCAGT-AGCTCGCGCTC----CTGCGCTA-A--AACC---CGC--T-CT-AAAC-TA--GGCCA-ACGGCA-----ATAC----GC-----T-----CT-A-------GGCCG-GC------CTCTAAA-----CC-GG----G----C------T-A--------TAA---ACCCGGCC------G---T------GCTA-----T--A---A-----A-CCGGCC-------TA--------G-----------------C--------GACCCCTGCTGGGGTC-AAACCGCTTGA-CC---AATCAGCA--------------TTGA-CCTCATTTG-CA-TAAAAA-----GTGCACTC-AG---TTG---AAC-CGCCC--ATGGA------GG--------C--------GC-TTG-ACC--------------------ACTCCG---TTGA-CCC-GCCAATCAGCGTCCTAGATATTGAACTCCCCAT-GGAGGCCGGTTATACTACT
gi|1 : ACCCAGAATATG-ACAGAC-CCAGGCTTA--GGATTTT-TTT-CCCGGACTTCCCGGAGTCACCGAATGT--AACGGGA-CTGGAA-CTGGGTCTCTACAA------CACT-C-AGAATGCATTG-------GAAACC--ACAGCCATGAACAA-AGAAGATTTTGCGAA-CATTTC---CACC-ATGCTAGA-CGGGATCGTTAACCGCATTAATGTGCTGAGTGACGAAATTGGAAATCATACCAGAATCCTG-TAAAGAAGCTGGAAGAGCTGACAGCCAAAAA-------ACCCAGGAA-GGAATA-CGTCCCCGATTACGCTACTAACCCGTGCTACACCTG-TG---GAGCAACAGGACATTAATCACCG----G-ATTGCCCACAGAA-AA------------CATATTCCCCGCAAACCAGTAAGAAA----T-CCTGG--TC----GTC-AG--ATTCCCAGAGTAAGAATTCACAGAAGACC--AACAAGAAAACTA-AACAAAAGAAT-CCTTGCTAC-AAGTGCGGAAAACTAGGACACTGGATC-AGTGACTGTCCGG--AAGAACAAGCTGAGATAGCTGCGATGATT-CCTCCAGTACCTGGCTCAAAACCGCCCGTGAAGAGAGAGTA-ACACCGTTAGAGATGGGGAACCCAC-CCGCACCTAAACAAACCAGTGAAAAAC-CACC-G-AAAAGAAGAAGATACTCAGC-AAAAAAT-A----A-A-----CTGGACTGTGC-T----TAG-TGAACTGTTTGTA---TGCTTAGTGAGCACTGTGAA-CTGTT--TAAAAACTGTGCTTAGTGAAA--TG---TGCATTG--T-TCTTGTTTCAAATGTTTA----TGCTTTAATAAACATGTAAACTTAAAAACCTTGTGTTATTATTTCACCCAGCTTGTGA-TTTAT-TA-TGGATTT---C-----A------TGGA--TTTA----AT-ACACAGGATTTCATAGGATGTTA----------TGCACTGCATG--TT--AT----CGA------ATTTT-------TAACAGTGCAACA-----------T-TTGACGTC-ATAATGC------ACTTCTCCAAGT-CAAAACCGCTTGACGTCA-CAATGGCCAGT-AGCTCGCGCTCCACGCTGTGCTA-A--AATCTG-CAC--T-CT-AAAC-TA--GGCTA-AT-ACA-----CTGC----GC-----C-----CTCAACCC---GGCCG-GG------CTC---A-----CA-GG----G----C------T-A--------TAA---ACCCGGCC------GGGCTCACAGGGCTA-----T--A---C-----A-CCGGCCGTGCTATTA--------ACCGATCGGGCTAACCGTC--------GACCCTTGCT-GGGTC-AACCCGCTTGA-CC---AATCAGAA--------------TTGA-CATCATTTG-CA-TAAAAA-----TTGCACTC--G---TTGA--AAC-CACCC--ATGGA------GG--------C--------GCGTTATACT--------------------ACT
gi|10 : ggctataaaagcagagtccccgctttcacttttcacatcgacttcagaccttgacctgagaacatggctcagaaacagctataattcgtggacagggctcagaagaaagtggataacatgatacagaaacagacagggcttcagaaagatgtcttgaaagaagaggacagacaagaggtacaggaggcttacattgcacatcagctgaaaaaggcgaagactgaggagtatctacctCCCCGCAGACCAGTAAGAAA----T-CCCGG--TT----GTC-AG--ATTCCCAG----------C-----AGACC--AGCAAGAAA-CCA-AAGAAAAGGAT-CCTTGCTAC-AAGTGCGGAAA-CTAGGACACTGGATC-AGTAACTGTCCGG--AAGAACAAGCCGAGATAGATGCGATGAT--CCCCCCGTACCTGGCTCAAAACCGCCCATCAAGAGATAGTACAAACCGTTAGAGATGTGGAACCCGC-CCACACCTAAACAACCTACTGAAAAAC-CGCA-GAAAAAGAAGATGAGCTTTAGC-C--AAGTTA----A-A-----
gi|11 : aaatcatccG--AAGAACAAGCTGAGATAGAAGCAATGATG-TCCCCGGTTCC----------CTGC-----AAGAGAGGGTACAAACCTTGAGAGATGTGGAAACCTC-CAGCGCCTAAA-AGACCACTGAAGAAC-CGCA-GAAAAAGAAGAGGAAACTAAGT-AGAAATTAATGTTA-AACT--CTGGAC---GG-T----T-A-TAAACTG--TGAA---CTCTTA-----C----AAAAGCTGT------AAACTGT-T---ATAAGC--TG---TGAACTG--TGTT--------------TATGGGTGGTTTAAAAAAAATGAAGATTT--tgcttga
gi|12 : GGAACCATACAAGAATCCTACTCAAGAAGCTGGGAGAGCTGAAGTAGAAAAA-------CCCCATGAATGAAATA----TCCA----------CTAACCTCTGCTGCACTTG-TA------AAACAG--------------------ATTGCCCACAAAA-AA------------C------------------CAAGAAA----A-CCTGG--T-----CTCTAA--ATTCTTCG----------C-----AGAAA--ACCAAGAAAACTAGAACGAA-GGAC-CCTTGCTAC-AAGTGCGGTAAACTTGGACATTGGATC-AACAATTGTCCGG--AAGAACAAGC
gi|13 : -ATAATGCTTTTTCACTTCTCCAAGT-C-CAGCCGAATGACGTCA-CAATAGCCAGT-AGCTCGCGCTT----CTGTGCTA-A--AACCTTGCAC--T-CT-AAAC-TA--GGCTA-A----A-----ACAC----TC-----TCAA--CT-A-------GGCCA-GC------CTATAAA-----CC-AG----G----G------T-A--------TAC---ACCAGCCC------G---T------GCTC-----T--A---A-----A-CCGGGC-------TA--------G--------------------------GACCCCTGCTGAGGTC-AAACCGCT
gi|14 : actgcttgttatagcatagaggaacattggatgagcaaatT--TCAAACCTGT-GTTCA---AC--TG---TGC-TTA--A-AC--------------TC----TGCTTTAATA--CAT--AAGCTT--AAACCCTGAGCTATTCTT--ACCAATCTTG-GATTTTATGCACTGGAATT---T-----ATTGC-TTGGA--TTTA-GCGAT-ACACA
gi|14 : tccGGATTTTATGCAC-----TGGAATTTATTGCTTGGATTTAGCGAT-ACACATTCCGAGACTTTAAAAGTGCTACATTttccgagactttaaaagtgctacatt
gi|15 : tccttcaaacctgtgttcaactgtgcttaaactctgctttaatacataagcttaaaccctgagctattcttaccaatcttT--TCAAACCTGT-GTTCA---AC--TG---TGC-TTAAAT-GC--------------TG----TGCTT-AATA--CAT--AAGCTT--AAACCCTGAGCTATTCTT--ACCAATCTTG-GATTTTATGCACTGGAATT---T-----A-TGCCTTGGA--TTTA-GCGAT-ACACA
gi|15 : ccGGATTTTATGCAC-----TGGAATTTATGCCTTGGATTTAGCGAT-ACACATTCCGAGACTTTAAAAGTGCTACATTttccgagactttaaaagtgctacatt
gi|17 : ccttcaaacctgtgttcaactgtgcttaaatgctgtgcttaatacataagcttaaaccctgagctattcttaccaatcttCCAACC------G---C------ACTA-----T--GTTGA-----A-CCAGCC--------A--------T-----------------C--------TACCCCACCT---------ACC-CTCGA-CC---AATCAGAA--------------ATGA-CCTCAC--------AAAAA-----GTGCACTT-AG---TTA---AAC-CAGCC--ATAGA------GG--------C--------AC-CT
gi|18 : acctCACTTT-CACTCAAAA-----GTGCACTC-AG---TTG----AC-CTCCC--ATTGG------GG--------tatacta
gi|2 : CACTCAGAATCCT-ACA-AC-CCAGGCTTG--GG-TTTT-TTTTCCCGGAGATTC-AGAGGCACAAGATGT--CACGGGA-CTGGAA-CTGGGCCTCT-CAA------CCCT-CCAGAATG-------------AGCCCTTCCGGCCA--GACAA--GAAGACTTTGCGATTCATTAC---CACCGACATAAGA-CGGGATTGTTA--CGCATTAATGTGCTGCGTAATGAGATTGGAAATCATACCACCGTCCTGCTGAAGAAGCTGGAAGACCTGACGGGGAAAAATCTAGATCCCTAGGAA-GAACTATCACTCCAGATTCGGCTA-TAACCCGTGCTCAACTTGTTGCGTGTGAAACAGGGCATTGGTCGCCG----GTATTGCCCCCAGAATAG------------CAGATTTCCCGCA-ACCAGTAAGAAAGATTT-TC--G--CAGACAGTA-AGAAATCGCCGA----------T-----A-ACCAGAGAAAGAAAA-CA-AACAACGGGATCCCTTGC-ACAAAGTGCGGGAAATT-GGACACTGGATCAAGTGACTGTCCGGAAAAGAA-AAGCGGAG-TCGATGAGATGATTGGGCCCCGTAACTGGCTCAAAACC-CGCTTGAAGAGAGAGTACAAACCGCTAGAGA-GT----CCCCT-CCGC----------ACTACTGAAGAA--CGCCTTAAAAAGAAGA-GCAACTGAGCACG-AAGTAA----A-AAAAACTTGAACTGTTT-TTTTAT-GCTGAACTGTTT-TACATTGATAA-----C----TGAA-CTGTT--TTTATGCTG--TTTAATAAAC--TGGTTTGAGTTG--T-----------------------TGCTTTAATAAACATGTAAACTT--AAAACCTGGTGTAGTCTTT-ATTATGCT---GAGCGAATACAC-AGATTTAAACAAGGAA-TAGACTGGATTTTTATGCGATGATACAGGAATACACAGGA--ACA----C-----TGGATTTTATGC----GAT----CGATAACACATTCC-------TAAGTGTGATACA---------TTT-ATGACGTCAATAATG--------TCTCTCAAGGT------CCGATT--TTTCAGAAATAG-CATTCAGC-----CTT----TTTCACGA-ATCAA------GC-------GAAG-TA--GATCC-ACGGCA-----ATATA---GCCAACTT-----AT-A-------TAACC-GC------CTCTAAA-----CC-AGCCGTG----C------T-A--------TAA---TACCG---------G---T------ACTC-----T--A---A-----A-CCGG-C-------TA--------G--------------------------GACCCCTGCTGGGGTC-AAAC----TGA-CC---g
gi|2 : ttttcacattttacacctgcaaccagagaacatggctctagatgaacaggctagaattcgtggacagagtcagaagaagtgaataacatggtacgaaaaagacgggaatgcaacaggagatttcttggcgaagcaaacagttagacagggtacatgagcttacattggcacagcagctgataaaaggcaaggactgaggatttctaatacgctTA-T--AACC---GCC--T-CT-AAAC-CA--G-CCGTGCTATA-----ATACCGGTAC-----T-----CT-A-------AACCG-GCTAGGACCCCTG-------CT-GG----G----G------T-C--------AAACTGACCCGTCT------A---T------GCTA-----TTTG---A-----A-CCG-CC-------CA--------T-----------------C--------GAGCCCTG---------AAAACGCTTGAACCTCAAGTCAGCAAGAACCGCATCTGCTTGA-CCTCATTTGTCA-TAAAAACAACGGTGCACTCAAG---TTGTGAAAC-CTCCCCTATGGA------GG--------cgtctatgctatttgaaccgcccatcgagccctgaaaacgcttgaacctcaagtcagcaagaaccgcatctgcttgacctcatttgtcataaaaacaacggtgcactcaagttgtgaaacctcccctatggagggcggaggctactaa
gi|3 : ttttcacattttacacctgcaaccagagaacatggctctagatgaacaggctagaattcgtggacagagtcagaagaagtgaataacatggtacgaaaaagacgggaatgcaacaggagatttcttggcgaagcaaacagttagacagggtacatgagcttacattggcacagcagctgataaaaggcaaggactgaggatttctaatacgctcactcagaatcctacaacccaggcttgggttttttttcccggagattcagaggcacaagatgtcacgggactggaactgggcctctcaaccctccagaatgagcccttccggccagacaagaagactttgcgattcattaccaccgacataagacgggattgttacgcattaatgtgctgcgtaatgagattggaaatcataccaccgtcctgctgaagaagctggaagacctgacggggaaaaatctagatccctaggaagaactatcactccagattcggctataacccgtgctcaacttgttgcgtgtgaaacagggcattggtcgccggtattgcccccagaatagcagatttcccgcaaccagtaagaaagattttcgcagacagtaagaaatcgccgataaccagagaaagaaaacaaacaacgggatcccttgcacaaagtgcgggaaattggacactggatcaagtgactgtccggaaaagaaaagcggagtcgatgagatgattgggccccgtaactggctcaaaacccgcttgaagagagagtacaaaccgctagagagtcccctccgcactactgaagaacgccttaaaaagaagagcaactgagcacgaagtaaaaaaaacttgaactgtttttttatgctgaactgttttacattgataactgaactgtttttatgctgtttaataaactggtttgagttgttgctttaataaacatgtaaacttaaaacctggtgtagtctttattatgctgagcgaatacacagatttaaacaaggaatagactggatttttatgcgatgatacaggaatacacaggaacactggattttatgcgatcgataacacattcctaagtgtgatacatttatgacgtcaataatgtctctcaaggtccgatttttcagaaatagcattcagcctttttcacgaatcaagcgaagtagatccacggcaatatagccaacttaCACTCAGAATCCT-ACAGAC-CCAGGCTTG--GGATGTT-TTCCCCCGGAGATTCCAGAGTCACAAGATGT--AACAGGG-CTGGAA-CTGGGGCTCTACAA------CCCT-C-AGAATG--------------AACCT-CCGAACCTGAACAA-AGAAGATTTTGCGAT-CATTAC---CACG-ACACTAGA-CGGGATCGTTAACCGCATTAATGTGCTGAGTAATGAGATTGGAAATCATACCACAGTCCTACTGAAGAAGCTGGAAGAGCTGACGGGTAAAAA-------GCCTAGGAA-GGAATA-CACCTCAGATTACGCTACTAAACCGTGTTACACTTG-TG---GACAAACAGGACATTATTCGCCG----G-ATTGCCCACAGAA-AA------------CAGATTATCCGCAGACCAGTAAGAAA----T--------T-----GGC-AG--ATTCCCAC----------C-----AGACT--AGCAAGAAAACCA-AACAAAGGGAT-CCTTGCTAC-AAGTGCGGAAAATTAGGACACTGGATC-AGTGAACGTCCTG--AAGAACAAGCGGAGATAGCCGAGATGATT-GGTCCCGTACCTGGCTCAAAACCCACTGTGAAGAGAGAGTACAAACCGTTAGAGATGTGGAATCCGC-CCGTACCTAAACAAACCAGTGAAGAAC-TACC-G-AAAAGAAGAAGAAACTTAGC-CGAAAGTAA----ATA-----CGGGACTGTGC-T--------TGAACTGTTTTTA---TGCTTA-----T----TCAA-CTATT--TAAAAACTGT-TTTAA-AAACATTG---TGCATTG--T-TC--------------TA----TGCTTTAATAAACATGTAAACTT--AAACCTTGTGTTATTCTTT-A--------------TTATGCACAGGATTT---C-----A-TACACAGGA--TTTA----AT-ACACAGGAATACATAGGATTTTA----C-----TGGATTTTATCCCTTGGAT----CGAT-ACACATTCC-------TAAGTGTGCTACATTT------TTT-TTGACGTC-ATAATGC---------TCTCCAAGTCC-CAACCGAATGACGTCA-TAATAA--A----------GCTC----CTGTGCTA-A--AAC------C--T-CT-AAAC-TA--GGCCA-GCGGCA-----ATAC----AC-----T-----CT-A-------GGCCG-AC------CTATAAA-----CC-GG----G----C------T-G--------TAA---ACCCGGCC------A---T------GCTA-----T--A---A-----A-CAGGCC-------TA--------G--------------------------GACCCCTGCTGGGGTC-AAATCGCTTGA-CC---AATCAGCA--------------TTGA-CCTCATTTG-CA-TAAAAA-----GTGCACTC-AG---TTG---ACC-TCCCT--ATGGA------GG--------C--------GC-TTG-ACC--------------------ACTCCG---TTGACCCC-GCCAATCAGCGTCCTAGATATTGAACTCCCTAT-CGAAGCGGGTTATACTACTgcggaggctactaa
gi|4 : GGCTTG--GGATTAT-TTT-CCCGAACATCCCGGAGTCACAAGATGT--AACGGGA-CTGGAA-CTGGGCCTCTACAA------CACT-C-AGAATGTATCG-------GAGACC--CCGGTCATGAACAA-AGAAGATTTTGCGAT-CATTTC---CACT-ACACTAGA-CGGGATCGTTAACCGCATTAATGTGCTGAGTGACGAAATTGGAAATCATACCACAATCCTACTGAAGAAGCTGGAAGAGCTGACGCCTAAAAA-------CCCCAGGAA-GGAATA-CGTTCCCAATTACGCTACTAACCCGTGCTACACTTG-TG---GAGAAACAGGACATTGGTCGCCG----G-ATTGCCCACAGAA-AA------------CAGATTTCCCGCAGACCAGTAAGAAA----T-C--------------C-AG--AT----------------------AAAAC--A-----AAAACCA-AACAAAAGGAT-CCTTGCTAC-AAGTGCGGAAAATTAGGACACTGGATC-AGTGACTGTCCAA--AAGAACAAGCGGAGATAGCTGCGATGATT-CCTCCAGTACCTGACTCAAAACCCCCTGTGA--AGAGAGTACAAACAGTTAGAGATGTGGAATCCGC-CCGCACCTAAACAAACCACTGAAGAAC-CACC-GAAAAAGAA---GAAACTCAGC-AAAAAGT-A----A-A-----CTGGACTGTGCTT----T-G-TGAACTGTTTTTA---TGCTTA-----C----TGAA-CTGTTACTGTGAACTGT-TTAAAac
gi|5 : GGGTTTTA----TGCAG-CGGATTTTATGCCTTGGAT----CGAT-ACACATTCC-------TACACGTACTACATTT------TTT-TTTACGTC-ATAATGC------ACTTCTCCAAGG-C-TAGCCGAATGACGTCA-CAATAG------AGCTCGCGCTC----CTGTGCTA-A--AACCTG-CAC--T-CT-AAAC-TA--GGCCA-ACGGCAATTTGATAC----AC-----TCTCAACT-A-------GGCCATACG-----CTCTAAACCCGGCC-GG----G----C------TCACCGGCCTCTAA---ACTCGGCC------A---T------GCTA-----T--A---ATCCCGA-CCGGGC-------TATAAACCCGG-----------------CCGGACTAGGACCCCTGCTGTGGTC-AAACCTCTTGA-CC---AATCAGCA--------------TTGA-CCTCATTTG-CA-TAAAAA-----GTGCACTC-AG---TTG---AACTCG-CT--ATGGAAACCGGGG--------CCAGGTCAAGC-TTG-ACCCCCACTGCGCATGTGCGATGACCCCGCCATTGA-CCCAGCCAATCAGCGTCCTAGATATTGAACTCGCCAT-GGAGGCCGGTTATACTACT
gi|6 : CCAGAATCCTTACAGACTCCAGGCTTCATGGATTTTATTTTTCCTGACA---------CACAGGATGGCAAACCGGATCTGGAAACTAGGTCTCTATAATCTCCTCACTAC-AGAATGCATCGCGAACTAGAGCCCT-CC---CACTGACAAGATAACATTTC-CGCT--ATTTCACATACC-ACTCTAGAACAAGATAGTAAACAAGATTAATGGACTGGTCGAGGATATTGGTAAtccgt
gi|7 : gctataaaaatcaggccagatgtcctacacttcaatccgacttcagacagtgagcagacaacataggcacagaaacgggctagattttgtgcgacagaagttcagaagaaagtcaatagatagtacacacttcagtatcagttgggtcccagaaatatttacttgagtgaaagaggacagatatgagccttacatgctggcacatccagctaaaaaaggcgcaggaacaagccaatggttatatagGAAAAAGATGGAAGAGCTGACAGCGAAAAA--------------------------CTCCAGA-TACGCCACT-ACCCGAGCTACACTTG-TG---GAGAAATAGGCCATT-GTCACCGGATTG-ATTGCCTGCAGAA-AACTAAGAAAACCTCAGATTCCCCGCAGACCAGTAAGAAA----TCCC--GGTT-----GTC-AG--ATTCCCAG----------C-----AGACC--AGCAAGAAAACCA-AAGAAAA--AT-CCTTGCTAC-AAGTGCGG-AAACTAGGACACTGGATC-AGTAAC-GTCCGG--AAGAACAAGCCGAGATAGATGCGATGA-T-CCCCCCGTACCTGGCTCAAAACCGCCCATCAAGAGATAGTACAAACCGTTAGAGATGTGGAA-CCGCGCCACACCTAAACAACCTACTGAA-AACACGCA-GAAAAAAAAGATGAAGCTTAGC-CGAAAGTAA----A-
gi|8 : GGATTT---C-----A-TGCAC-GGT--TTTA---------------ATAC-CAGGATTTTA----TACCGTTGGATTTTA-------G------TGAT-ACACATTCC-------TAAAAGTGCTA-ATTTAAGGAATTTGTTGACGTC-A-AATACTTTTC-ACTTCTC---GT-C-CA-CCGCTTGATG-CA-CAATAGCCAGT-AGCTCGTGCTCCAAACTGTGCTA-A--AACC---TGC--CACTCAAAC-TA--GGCTA-A-ATCA-----ATGC----AC-----T----------------------GCG-----CTCTCAA-----CT-AG----GCAGCC------T-A--------T-A---ACCCGG-------------------GCTA-----T--A---A-----A-CCGGGC-------TG--------G-----------------C--------GA-CCCTGCTGGGATCAAAACAGCTTGA-C-----ACCTAC---------------TTGACCCCCACTGA-CA-TG---------------TC-CG---ATG---A---CG-CC--AT-------------------C--------A--TTG-ACC--------------------A-----------------GCAAACCAGCGTCCTAGATATTGAAA-CCCCATCGGAGG-CGTTTATACTACTtgc
gi|9 : gtaCTC----CTGTGCTA-A--AACC---TGCACT-CT-AAAC-TATAGGCCA-A-GTCA-----AAAC----AC-----TGCG--CT-ATCAACCCGGCCG-GG------CTC---A-----CC-GG----G----T------T-A--------TAA---ACCCGGCCTCACCAG----------GCTA-----T--A---A-----ATCCGGTC-------TA--------G-----------------ca
gi|9 : GCTATA--AATC---CGG--T-CT-AGATATA--AACCA---GGC---------C----GG-----G-----CT-A-------GCCCA-GC------CTCTAAA-----CCCGGCTGTG----C------T-A--------TAA---ACCCGGCC------G---G------GCTA-----------------------GCC-------CG--------G-----------------C--------GACCCCTACTGGGGTC-AAACTGC--G---C---ACTC--CG--------------TTGA-CCCC-------------AA-----GCGTCCT--AGATATTG---AAC-CGGCC--ATGGA------GGCCCGAAACC--------GC-TTG-ACC--------------------AATCatataaaccaggccgggctagcccagcctctaaacccggctgtgctataaacccggccgggctagcccggcgacccctactggggtcaaactgcgcactccgttgaccccaagcgtcctagatattgaaccggccatggaggcccgaaaccgcttgaccaatcagaagtctccctgctttaccttatttgcataaaaagtgcactcagttgaaccgcctatgtattggcgttatacca
gi|9 : ctcctgtgctaaaacctgcactctaaactataggccaagtcaaaacactgcgctatcaacccggccgggctcaccgggttataaacccggcctcaccag----CTGTGCTATA--AACC---CGG--C-C--GGGC-TA--GCCCG-GCGAC---------------C-----C-----CT-A---------CTG-GG------GTC-AAA-----CT-GC----G----CACTCCGT----------TGA---CCCCAAGC------G---T------CCTAGATATT--G---A-----A-CCGGCCA------TG--------G-----------------A--------GGCCC--------G---AAACCGCTTGA-CC---AATCAGAAGTCTCCCTGC----TTTA-CCTTATTTG-CA-TAAAAA-----GTGCACTC-AG---TTG---AAC-CGCCT--ATGTATT----GG--------C--------GT-TAT-ACC--------------------Aagaagtctccctgctttaccttatttgcataaaaagtgcactcagttgaaccgcctatgtattggcgttatacca
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|16 ): GATGAAAAATGGAATAAGACAAGTGGGAAGAAGAAGACAGGGAAAAGGGGACGAATGCAACGAGATGTTCTTGAGCGCAATGATAGACAGGAAGGTACAGGAGGCTTACATGGCACAGGCAGCTGAAAAAGGGCAAGAC
Alignments
lowQualScore : 1 1 11 1 11 222222 444444444444 11 111 22222222 111 111 111111 333333333333 44444444444444 111111 3333333333333333 1111 22222 33333333 111 3333333333 11 111 66666666666666666666666666 11 2222222222222222 22222222222222222 2222 5555555555 2222 3333333 222222222 3333333 111111 222222 2222 2222222222 666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666 22222222222222222 111111111111111111 66666666666666666666666666666666666666666666 55555555555555 11111 111 3333333333333333333333333 88888888888888888888888888888888888888 1
lowQualScore : 0 2 0 11 0 8 3 22 66 0 11 8 8 1 0 333333 0 8 8 333333333333 0 88 444 3 88 8 1 444 8 4 8 0 1 1 22 88888888 6 222 1 3 6 111 1 88 555555 6 444444444444 1 3 33333333333333 1 5 666666 0 5555555555555555 77 3 5 2 5 5 3 1 5 0 66 1 1 77 0 4 0 1 0 5 5 0 0 1 5 66 5 8 1 9999 8 2222 5 88888 0 8 22222222 0 8 444 0000000000 8 77 44 5 1 77 99 111 9 55555555555555555555555555 7 00 99 1 1 2222222222222222 3 6 88888888888888888 99 6666 6 3 2222222222 0 999 4 4444 5 7777777 1 666666666 8 6 9999999 2 555555 1 6 000000 3 1 1111 8 55 1111111111 4 4 55 0 777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777 777 2 55555555555555555 777777777777777777 3 2 55555555555555555555555555555555555555555555 66 0 4 4 777 0 11111111111111 5 44 4 11111 4 777 222 4 88 66 0 1111111111111111111111111 5 6 22222222222222222222222222222222222222 7 3 6
lowQualScore : . . . .. . . . .. .. . .. . . . . ...... . . . ............ . .. ... . .. . . ... . . . . . . .. ........ . ... . . . ... . .. ...... . ............ . . .............. . . ...... . ................ .. . . . . . . . . . .. . . .. . . . . . . . . . . . .. . . . .... . .... . ..... . . ........ . . ... .......... . .. .. . . .. .. ... . .......................... . .. .. . . ................ . . ................. .. .... . . .......... . ... . .... . ....... . ......... . . ....... . ...... . . ...... . . .... . .. .......... . . .. . ...................................................................................................... ... . ................. .................. . . ............................................ .. . . . ... . .............. . .. . ..... . ... ... . .. .. . ......................... . . ...................................... . . .
lowQualScore : 0 5 0 00 8 0 6 22 44 6 00 0 0 4 8 000000 6 0 0 666666666666 6 66 666 8 88 0 4 000 0 6 0 8 4 4 00 33333333 7 888 0 2 7 777 5 88 000000 7 222222222222 7 0 00000000000000 6 7 444444 1 1111111111111111 99 0 7 3 7 7 9 7 7 1 99 0 3 11 7 3 7 7 7 3 7 1 7 7 7 44 0 6 0 6666 7 1111 7 33333 8 0 00000000 8 8 000 2222222222 0 99 99 7 3 00 22 777 8 33333333333333333333333333 3 00 22 0 4 0000000000000000 2 0 55555555555555555 22 7777 7 2 4444444444 6 333 3 3333 7 1111111 9 555555555 0 7 0000000 5 555555 0 7 777777 2 0 2222 0 55 9999999999 0 0 55 7 999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999 000 0 11111111111111111 666666666666666666 6 8 44444444444444444444444444444444444444444444 66 7 0 4 888 4 22222222222222 0 66 4 11111 4 888 222 4 66 11 1 3333333333333333333333333 7 7 22222222222222222222222222222222222222 3 3 7
consensus : CACCCAGAATCCT-ACAGAC-CCAGGCTTG--GGATTTT-TTTTCCCGGACATCCCGGAGTCACAAGATGT--AACGGGA-CTGGAA-CTGGGCCTCTACAA------CACT-C-AGAATGCATCG-------GAGACCT-CCGGCCATGAACAA-AGAAGATTTTGCGAT-CATTTC---CACC-ACGCTAGA-CGGGATCGTTAACCGCATTAATGTGCTGAGTGACGAGATTGGAAATCATACCACAATCCTACTGAAGAAGCTGGAAGAGCTGACGGNNAAAAA-------CCCCAGGAA-GGAATA-CGCTCCAGATTACGCTACTAACCCGTGCTACACTTG-TG---GAGAAACAGGACATTGGTCGCCG----G-ATTGCCCACAGAA-AA------------CAGATTCCCCGCAGACCAGTAAGAAA----T-CC-GG-T-GTC-AG------ATTCCCAG----------C-----AGACC--AGCAAGAAAACCA-AACAAAAGGAT-CCTTGCTAC-AAGTGCGGAAAACTAGGACACTGGATC-AGTGACTGTCCGG--AAGAACAAGCNGAGATAGATGCGATGATT-CCCCCCGTACCTGGCTCAAAACCGCCCGTGAAGAGAGAGTACAAACCGTTAGAGATGTGGAACCCGC-CCGCACCTAAACAAACCACTGAAGAAC-CGCC-GAAAAAGAAGANGAAACTNAGC-CGAAAGTAA----A-A-----CTGGACTGTGC-T----T-G-TGAACTGTTTNTA---TGCTTA-----C----TGAA-CTGTT--TNAAAACTGT-TTTAATAAAC--TG---TGCATTG--T-TC--------------TA----TGCTTTAATAAACATGTAAACTT--AAACCCTGNGCTATTCTTT-ACCAANCTTG-GATTTTATGCACTGGATTT---C-----A-TGCACTGGA--TTTA-GCGAT-ACACAGGAATACACAGGATTTTA----C-----TGGATTTTATGCCTTGGAT----CGAT-ACACATTCC-------TAAAAGTGCTACATTT------TTT-TTGACGTC-ATAATGC------ACTTCTCCAAGT-C-CAGCCGANTGACGTCA-CAATAGCCAGT-AGCTCGCGCTC----CTGTGCTA-A--AACC---CGC--T-CT-AAAC-TA--GGCCA-ACGGCA-----ATAC----GC-----T-----CT-A-------GGCCG-GC------CTCTAAA-----CC-GG----G----C------T-A--------TAA---ACCCGGCC------G---T------GCTA-----T--A---A-----A-CCGGCC-------TA--------G-----------------C--------GACCCCTGCTGGGGTC-AAACCGCTTGA-CC---AATCAGCA--------------TTGA-CCTCATTTG-CA-TAAAAA-----GTGCACTC-AG---TTG---AAC-CGCCC--ATGGA------GG--------C--------GC-TTG-ACC--------------------ACTCCG---TTGA-CCC-GCCAATCAGCGTCCTAGATATTGAACTCCCCAT-GGAGGCCGGTTATACTACT
Reference ( family-1393 ) : CACCCAGAATCCT-ACAGAC-CCAGGCTTG--GGATTTT-TTTTCCCGGACATCCCGGAGTCACAAGATGT--AACGGGA-CTGGAA-CTGGGCCTCTACAA------CACT-C-AGAATGCATCG-------GAGACCT-CCGGCCATGAACAA-AGAAGATTTTGCGAT-CATTTC---CACC-ACGCTAGA-CGGGATCGTTAACCGCATTAATGTGCTGAGTGACGAGATTGGAAATCATACCACAATCCTACTGAAGAAGCTGGAAGAGCTGACGGNNAAAAA-------CCCCAGGAA-GGAATA-CGCTCCAGATTACGCTACTAACCCGTGCTACACTTG-TG---GAGAAACAGGACATTGGTCGCCG----G-ATTGCCCACAGAA-AA------------CAGATTCCCCGCAGACCAGTAAGAAA----T-CC-GG-T-GTC-AG------ATTCCCAG----------C-----AGACC--AGCAAGAAAACCA-AACAAAAGGAT-CCTTGCTAC-AAGTGCGGAAAACTAGGACACTGGATC-AGTGACTGTCCGG--AAGAACAAGCNGAGATAGATGCGATGATT-CCCCCCGTACCTGGCTCAAAACCGCCCGTGAAGAGAGAGTACAAACCGTTAGAGATGTGGAACCCGC-CCGCACCTAAACAAACCACTGAAGAAC-CGCC-GAAAAAGAAGANGAAACTNAGC-CGAAAGTAA----A-A-----CTGGACTGTGC-T----T-G-TGAACTGTTTNTA---TGCTTA-----C----TGAA-CTGTT--TNAAAACTGT-TTTAATAAAC--TG---TGCATTG--T-TC--------------TA----TGCTTTAATAAACATGTAAACTT--AAACCCTGNGCTATTCTTT-ACCAANCTTG-GATTTTATGCACTGGATTT---C-----A-TGCACTGGA--TTTA-GCGAT-ACACAGGAATACACAGGATTTTA----C-----TGGATTTTATGCCTTGGAT----CGAT-ACACATTCC-------TAAAAGTGCTACATTT------TTT-TTGACGTC-ATAATGC------ACTTCTCCAAGT-C-CAGCCGANTGACGTCA-CAATAGCCAGT-AGCTCGCGCTC----CTGTGCTA-A--AACC---CGC--T-CT-AAAC-TA--GGCCA-ACGGCA-----ATAC----GC-----T-----CT-A-------GGCCG-GC------CTCTAAA-----CC-GG----G----C------T-A--------TAA---ACCCGGCC------G---T------GCTA-----T--A---A-----A-CCGGCC-------TA--------G-----------------C--------GACCCCTGCTGGGGTC-AAACCGCTTGA-CC---AATCAGCA--------------TTGA-CCTCATTTG-CA-TAAAAA-----GTGCACTC-AG---TTG---AAC-CGCCC--ATGGA------GG--------C--------GC-TTG-ACC--------------------ACTCCG---TTGA-CCC-GCCAATCAGCGTCCTAGATATTGAACTCCCCAT-GGAGGCCGGTTATACTACT
gi|1 : ACCCAGAATATG-ACAGAC-CCAGGCTTA--GGATTTT-TTT-CCCGGACTTCCCGGAGTCACCGAATGT--AACGGGA-CTGGAA-CTGGGTCTCTACAA------CACT-C-AGAATGCATTG-------GAAACC--ACAGCCATGAACAA-AGAAGATTTTGCGAA-CATTTC---CACC-ATGCTAGA-CGGGATCGTTAACCGCATTAATGTGCTGAGTGACGAAATTGGAAATCATACCAGAATCCTG-TAAAGAAGCTGGAAGAGCTGACAGCCAAAAA-------ACCCAGGAA-GGAATA-CGTCCCCGATTACGCTACTAACCCGTGCTACACCTG-TG---GAGCAACAGGACATTAATCACCG----G-ATTGCCCACAGAA-AA------------CATATTCCCCGCAAACCAGTAAGAAA----T-CCTGG-TCGTC-AG------ATTCCCAGAGTAAGAATTCACAGAAGACC--AACAAGAAAACTA-AACAAAAGAAT-CCTTGCTAC-AAGTGCGGAAAACTAGGACACTGGATC-AGTGACTGTCCGG--AAGAACAAGCTGAGATAGCTGCGATGATT-CCTCCAGTACCTGGCTCAAAACCGCCCGTGAAGAGAGAGTA-ACACCGTTAGAGATGGGGAACCCAC-CCGCACCTAAACAAACCAGTGAAAAAC-CACC-G-AAAAGAAGAAGATACTCAGC-AAAAAAT-A----A-A-----CTGGACTGTGC-T----TAG-TGAACTGTTTGTA---TGCTTAGTGAGCACTGTGAA-CTGTT--TAAAAACTGTGCTTAGTGAAA--TG---TGCATTG--T-TCTTGTTTCAAATGTTTA----TGCTTTAATAAACATGTAAACTTAAAAACCTTGTGTTATTATTTCACCCAGCTTGTGA-TTTAT-TA-TGGATTT---C-----A------TGGA--TTTA----AT-ACACAGGATTTCATAGGATGTTA----------TGCACTGCATG--TT--AT----CGA------ATTTT-------TAACAGTGCAACA-----------T-TTGACGTC-ATAATGC------ACTTCTCCAAGT-CAAAACCGCTTGACGTCA-CAATGGCCAGT-AGCTCGCGCTCCACGCTGTGCTA-A--AATCTG-CAC--T-CT-AAAC-TA--GGCTA-AT-ACA-----CTGC----GC-----C-----CTCAACCC---GGCCG-GG------CTC---A-----CA-GG----G----C------T-A--------TAA---ACCCGGCC------GGGCTCACAGGGCTA-----T--A---C-----A-CCGGCCGTGCTATTA--------ACCGATCGGGCTAACCGTC--------GACCCTTGCT-GGGTC-AACCCGCTTGA-CC---AATCAGAA--------------TTGA-CATCATTTG-CA-TAAAAA-----TTGCACTC--G---TTGA--AAC-CACCC--ATGGA------GG--------C--------GCGTTATACT--------------------ACT
gi|10 : ggctataaaagcagagtccccgctttcacttttcacatcgacttcagaccttgacctgagaacatggctcagaaacagctataattcgtggacagggctcagaagaaagtggataacatgatacagaaacagacagggcttcagaaagatgtcttgaaagaagaggacagacaagaggtacaggaggcttacattgcacatcagctgaaaaaggcgaagactgaggagtatctacctCCCCGCAGACCAGTAAGAAA----T-CCCGG-TTGTC-AG------ATTCCCAG----------C-----AGACC--AGCAAGAAA-CCA-AAGAAAAGGAT-CCTTGCTAC-AAGTGCGGAAA-CTAGGACACTGGATC-AGTAACTGTCCGG--AAGAACAAGCCGAGATAGATGCGATGAT--CCCCCCGTACCTGGCTCAAAACCGCCCATCAAGAGATAGTACAAACCGTTAGAGATGTGGAACCCGC-CCACACCTAAACAACCTACTGAAAAAC-CGCA-GAAAAAGAAGATGAGCTTTAGC-C--AAGTTA----A-A-----
gi|11 : aaatcatccG--AAGAACAAGCTGAGATAGAAGCAATGATG-TCCCCGGTTCC----------CTGC-----AAGAGAGGGTACAAACCTTGAGAGATGTGGAAACCTC-CAGCGCCTAAA-AGACCACTGAAGAAC-CGCA-GAAAAAGAAGAGGAAACTAAGT-AGAAATTAATGTTA-AACT--CTGGAC---GG-T----T-A-TAAACTG--TGAA---CTCTTA-----C----AAAAGCTGT------AAACTGT-T---ATAAGC--TG---TGAACTG--TGTT--------------TATGGGTGGTTTAAAAAAAATGAAGATTT--tgcttga
gi|12 : GGAACCATACAAGAATCCTACTCAAGAAGCTGGGAGAGCTGAAGTAGAAAAA-------CCCCATGAATGAAATA----TCCA----------CTAACCTCTGCTGCACTTG-TA------AAACAG--------------------ATTGCCCACAAAA-AA------------C------------------CAAGAAA----A-CCTGG-T-CTCTAA------ATTCTTCG----------C-----AGAAA--ACCAAGAAAACTAGAACGAA-GGAC-CCTTGCTAC-AAGTGCGGTAAACTTGGACATTGGATC-AACAATTGTCCGG--AAGAACAAGC
gi|13 : -ATAATGCTTTTTCACTTCTCCAAGT-C-CAGCCGAATGACGTCA-CAATAGCCAGT-AGCTCGCGCTT----CTGTGCTA-A--AACCTTGCAC--T-CT-AAAC-TA--GGCTA-A----A-----ACAC----TC-----TCAA--CT-A-------GGCCA-GC------CTATAAA-----CC-AG----G----G------T-A--------TAC---ACCAGCCC------G---T------GCTC-----T--A---A-----A-CCGGGC-------TA--------G--------------------------GACCCCTGCTGAGGTC-AAACCGCT
gi|14 : actgcttgttatagcatagaggaacattggatgagcaaatT--TCAAACCTGT-GTTCA---AC--TG---TGC-TTA--A-AC--------------TC----TGCTTTAATA--CAT--AAGCTT--AAACCCTGAGCTATTCTT--ACCAATCTTG-GATTTTATGCACTGGAATT---T-----ATTGC-TTGGA--TTTA-GCGAT-ACACA
gi|14 : tccGGATTTTATGCAC-----TGGAATTTATTGCTTGGATTTAGCGAT-ACACATTCCGAGACTTTAAAAGTGCTACATTttccgagactttaaaagtgctacatt
gi|15 : tccttcaaacctgtgttcaactgtgcttaaactctgctttaatacataagcttaaaccctgagctattcttaccaatcttT--TCAAACCTGT-GTTCA---AC--TG---TGC-TTAAAT-GC--------------TG----TGCTT-AATA--CAT--AAGCTT--AAACCCTGAGCTATTCTT--ACCAATCTTG-GATTTTATGCACTGGAATT---T-----A-TGCCTTGGA--TTTA-GCGAT-ACACA
gi|15 : ccGGATTTTATGCAC-----TGGAATTTATGCCTTGGATTTAGCGAT-ACACATTCCGAGACTTTAAAAGTGCTACATTttccgagactttaaaagtgctacatt
gi|17 : ccttcaaacctgtgttcaactgtgcttaaatgctgtgcttaatacataagcttaaaccctgagctattcttaccaatcttCCAACC------G---C------ACTA-----T--GTTGA-----A-CCAGCC--------A--------T-----------------C--------TACCCCACCT---------ACC-CTCGA-CC---AATCAGAA--------------ATGA-CCTCAC--------AAAAA-----GTGCACTT-AG---TTA---AAC-CAGCC--ATAGA------GG--------C--------AC-CT
gi|18 : acctCACTTT-CACTCAAAA-----GTGCACTC-AG---TTG----AC-CTCCC--ATTGG------GG--------tatacta
gi|2 : CACTCAGAATCCT-ACA-AC-CCAGGCTTG--GG-TTTT-TTTTCCCGGAGATTC-AGAGGCACAAGATGT--CACGGGA-CTGGAA-CTGGGCCTCT-CAA------CCCT-CCAGAATG-------------AGCCCTTCCGGCCA--GACAA--GAAGACTTTGCGATTCATTAC---CACCGACATAAGA-CGGGATTGTTA--CGCATTAATGTGCTGCGTAATGAGATTGGAAATCATACCACCGTCCTGCTGAAGAAGCTGGAAGACCTGACGGGGAAAAATCTAGATCCCTAGGAA-GAACTATCACTCCAGATTCGGCTA-TAACCCGTGCTCAACTTGTTGCGTGTGAAACAGGGCATTGGTCGCCG----GTATTGCCCCCAGAATAG------------CAGATTTCCCGCA-ACCAGTAAGAAAGATTT-TC-GC-A-GAC-AGTAAGAAATCGCCGA----------T-----A-ACCAGAGAAAGAAAA-CA-AACAACGGGATCCCTTGC-ACAAAGTGCGGGAAATT-GGACACTGGATCAAGTGACTGTCCGGAAAAGAA-AAGCGGAG-TCGATGAGATGATTGGGCCCCGTAACTGGCTCAAAACC-CGCTTGAAGAGAGAGTACAAACCGCTAGAGA-GT----CCCCT-CCGC----------ACTACTGAAGAA--CGCCTTAAAAAGAAGA-GCAACTGAGCACG-AAGTAA----A-AAAAACTTGAACTGTTT-TTTTAT-GCTGAACTGTTT-TACATTGATAA-----C----TGAA-CTGTT--TTTATGCTG--TTTAATAAAC--TGGTTTGAGTTG--T-----------------------TGCTTTAATAAACATGTAAACTT--AAAACCTGGTGTAGTCTTT-ATTATGCT---GAGCGAATACAC-AGATTTAAACAAGGAA-TAGACTGGATTTTTATGCGATGATACAGGAATACACAGGA--ACA----C-----TGGATTTTATGC----GAT----CGATAACACATTCC-------TAAGTGTGATACA---------TTT-ATGACGTCAATAATG--------TCTCTCAAGGT------CCGATT--TTTCAGAAATAG-CATTCAGC-----CTT----TTTCACGA-ATCAA------GC-------GAAG-TA--GATCC-ACGGCA-----ATATA---GCCAACTT-----AT-A-------TAACC-GC------CTCTAAA-----CC-AGCCGTG----C------T-A--------TAA---TACCG---------G---T------ACTC-----T--A---A-----A-CCGG-C-------TA--------G--------------------------GACCCCTGCTGGGGTC-AAAC----TGA-CC---g
gi|2 : ttttcacattttacacctgcaaccagagaacatggctctagatgaacaggctagaattcgtggacagagtcagaagaagtgaataacatggtacgaaaaagacgggaatgcaacaggagatttcttggcgaagcaaacagttagacagggtacatgagcttacattggcacagcagctgataaaaggcaaggactgaggatttctaatacgctTA-T--AACC---GCC--T-CT-AAAC-CA--G-CCGTGCTATA-----ATACCGGTAC-----T-----CT-A-------AACCG-GCTAGGACCCCTG-------CT-GG----G----G------T-C--------AAACTGACCCGTCT------A---T------GCTA-----TTTG---A-----A-CCG-CC-------CA--------T-----------------C--------GAGCCCTG---------AAAACGCTTGAACCTCAAGTCAGCAAGAACCGCATCTGCTTGA-CCTCATTTGTCA-TAAAAACAACGGTGCACTCAAG---TTGTGAAAC-CTCCCCTATGGA------GG--------cgtctatgctatttgaaccgcccatcgagccctgaaaacgcttgaacctcaagtcagcaagaaccgcatctgcttgacctcatttgtcataaaaacaacggtgcactcaagttgtgaaacctcccctatggagggcggaggctactaa
gi|3 : ttttcacattttacacctgcaaccagagaacatggctctagatgaacaggctagaattcgtggacagagtcagaagaagtgaataacatggtacgaaaaagacgggaatgcaacaggagatttcttggcgaagcaaacagttagacagggtacatgagcttacattggcacagcagctgataaaaggcaaggactgaggatttctaatacgctcactcagaatcctacaacccaggcttgggttttttttcccggagattcagaggcacaagatgtcacgggactggaactgggcctctcaaccctccagaatgagcccttccggccagacaagaagactttgcgattcattaccaccgacataagacgggattgttacgcattaatgtgctgcgtaatgagattggaaatcataccaccgtcctgctgaagaagctggaagacctgacggggaaaaatctagatccctaggaagaactatcactccagattcggctataacccgtgctcaacttgttgcgtgtgaaacagggcattggtcgccggtattgcccccagaatagcagatttcccgcaaccagtaagaaagattttcgcagacagtaagaaatcgccgataaccagagaaagaaaacaaacaacgggatcccttgcacaaagtgcgggaaattggacactggatcaagtgactgtccggaaaagaaaagcggagtcgatgagatgattgggccccgtaactggctcaaaacccgcttgaagagagagtacaaaccgctagagagtcccctccgcactactgaagaacgccttaaaaagaagagcaactgagcacgaagtaaaaaaaacttgaactgtttttttatgctgaactgttttacattgataactgaactgtttttatgctgtttaataaactggtttgagttgttgctttaataaacatgtaaacttaaaacctggtgtagtctttattatgctgagcgaatacacagatttaaacaaggaatagactggatttttatgcgatgatacaggaatacacaggaacactggattttatgcgatcgataacacattcctaagtgtgatacatttatgacgtcaataatgtctctcaaggtccgatttttcagaaatagcattcagcctttttcacgaatcaagcgaagtagatccacggcaatatagccaacttaCACTCAGAATCCT-ACAGAC-CCAGGCTTG--GGATGTT-TTCCCCCGGAGATTCCAGAGTCACAAGATGT--AACAGGG-CTGGAA-CTGGGGCTCTACAA------CCCT-C-AGAATG--------------AACCT-CCGAACCTGAACAA-AGAAGATTTTGCGAT-CATTAC---CACG-ACACTAGA-CGGGATCGTTAACCGCATTAATGTGCTGAGTAATGAGATTGGAAATCATACCACAGTCCTACTGAAGAAGCTGGAAGAGCTGACGGGTAAAAA-------GCCTAGGAA-GGAATA-CACCTCAGATTACGCTACTAAACCGTGTTACACTTG-TG---GACAAACAGGACATTATTCGCCG----G-ATTGCCCACAGAA-AA------------CAGATTATCCGCAGACCAGTAAGAAA----T-------T-GGC-AG------ATTCCCAC----------C-----AGACT--AGCAAGAAAACCA-AACAAAGGGAT-CCTTGCTAC-AAGTGCGGAAAATTAGGACACTGGATC-AGTGAACGTCCTG--AAGAACAAGCGGAGATAGCCGAGATGATT-GGTCCCGTACCTGGCTCAAAACCCACTGTGAAGAGAGAGTACAAACCGTTAGAGATGTGGAATCCGC-CCGTACCTAAACAAACCAGTGAAGAAC-TACC-G-AAAAGAAGAAGAAACTTAGC-CGAAAGTAA----ATA-----CGGGACTGTGC-T--------TGAACTGTTTTTA---TGCTTA-----T----TCAA-CTATT--TAAAAACTGT-TTTAA-AAACATTG---TGCATTG--T-TC--------------TA----TGCTTTAATAAACATGTAAACTT--AAACCTTGTGTTATTCTTT-A--------------TTATGCACAGGATTT---C-----A-TACACAGGA--TTTA----AT-ACACAGGAATACATAGGATTTTA----C-----TGGATTTTATCCCTTGGAT----CGAT-ACACATTCC-------TAAGTGTGCTACATTT------TTT-TTGACGTC-ATAATGC---------TCTCCAAGTCC-CAACCGAATGACGTCA-TAATAA--A----------GCTC----CTGTGCTA-A--AAC------C--T-CT-AAAC-TA--GGCCA-GCGGCA-----ATAC----AC-----T-----CT-A-------GGCCG-AC------CTATAAA-----CC-GG----G----C------T-G--------TAA---ACCCGGCC------A---T------GCTA-----T--A---A-----A-CAGGCC-------TA--------G--------------------------GACCCCTGCTGGGGTC-AAATCGCTTGA-CC---AATCAGCA--------------TTGA-CCTCATTTG-CA-TAAAAA-----GTGCACTC-AG---TTG---ACC-TCCCT--ATGGA------GG--------C--------GC-TTG-ACC--------------------ACTCCG---TTGACCCC-GCCAATCAGCGTCCTAGATATTGAACTCCCTAT-CGAAGCGGGTTATACTACTgcggaggctactaa
gi|4 : GGCTTG--GGATTAT-TTT-CCCGAACATCCCGGAGTCACAAGATGT--AACGGGA-CTGGAA-CTGGGCCTCTACAA------CACT-C-AGAATGTATCG-------GAGACC--CCGGTCATGAACAA-AGAAGATTTTGCGAT-CATTTC---CACT-ACACTAGA-CGGGATCGTTAACCGCATTAATGTGCTGAGTGACGAAATTGGAAATCATACCACAATCCTACTGAAGAAGCTGGAAGAGCTGACGCCTAAAAA-------CCCCAGGAA-GGAATA-CGTTCCCAATTACGCTACTAACCCGTGCTACACTTG-TG---GAGAAACAGGACATTGGTCGCCG----G-ATTGCCCACAGAA-AA------------CAGATTTCCCGCAGACCAGTAAGAAA----T-C---------C-AG------AT----------------------AAAAC--A-----AAAACCA-AACAAAAGGAT-CCTTGCTAC-AAGTGCGGAAAATTAGGACACTGGATC-AGTGACTGTCCAA--AAGAACAAGCGGAGATAGCTGCGATGATT-CCTCCAGTACCTGACTCAAAACCCCCTGTGA--AGAGAGTACAAACAGTTAGAGATGTGGAATCCGC-CCGCACCTAAACAAACCACTGAAGAAC-CACC-GAAAAAGAA---GAAACTCAGC-AAAAAGT-A----A-A-----CTGGACTGTGCTT----T-G-TGAACTGTTTTTA---TGCTTA-----C----TGAA-CTGTTACTGTGAACTGT-TTAAAac
gi|5 : GGGTTTTA----TGCAG-CGGATTTTATGCCTTGGAT----CGAT-ACACATTCC-------TACACGTACTACATTT------TTT-TTTACGTC-ATAATGC------ACTTCTCCAAGG-C-TAGCCGAATGACGTCA-CAATAG------AGCTCGCGCTC----CTGTGCTA-A--AACCTG-CAC--T-CT-AAAC-TA--GGCCA-ACGGCAATTTGATAC----AC-----TCTCAACT-A-------GGCCATACG-----CTCTAAACCCGGCC-GG----G----C------TCACCGGCCTCTAA---ACTCGGCC------A---T------GCTA-----T--A---ATCCCGA-CCGGGC-------TATAAACCCGG-----------------CCGGACTAGGACCCCTGCTGTGGTC-AAACCTCTTGA-CC---AATCAGCA--------------TTGA-CCTCATTTG-CA-TAAAAA-----GTGCACTC-AG---TTG---AACTCG-CT--ATGGAAACCGGGG--------CCAGGTCAAGC-TTG-ACCCCCACTGCGCATGTGCGATGACCCCGCCATTGA-CCCAGCCAATCAGCGTCCTAGATATTGAACTCGCCAT-GGAGGCCGGTTATACTACT
gi|6 : CCAGAATCCTTACAGACTCCAGGCTTCATGGATTTTATTTTTCCTGACA---------CACAGGATGGCAAACCGGATCTGGAAACTAGGTCTCTATAATCTCCTCACTAC-AGAATGCATCGCGAACTAGAGCCCT-CC---CACTGACAAGATAACATTTC-CGCT--ATTTCACATACC-ACTCTAGAACAAGATAGTAAACAAGATTAATGGACTGGTCGAGGATATTGGTAAtccgt
gi|7 : gctataaaaatcaggccagatgtcctacacttcaatccgacttcagacagtgagcagacaacataggcacagaaacgggctagattttgtgcgacagaagttcagaagaaagtcaatagatagtacacacttcagtatcagttgggtcccagaaatatttacttgagtgaaagaggacagatatgagccttacatgctggcacatccagctaaaaaaggcgcaggaacaagccaatggttatatagGAAAAAGATGGAAGAGCTGACAGCGAAAAA--------------------------CTCCAGA-TACGCCACT-ACCCGAGCTACACTTG-TG---GAGAAATAGGCCATT-GTCACCGGATTG-ATTGCCTGCAGAA-AACTAAGAAAACCTCAGATTCCCCGCAGACCAGTAAGAAA----TCCC-GGTT-GTC-AG------ATTCCCAG----------C-----AGACC--AGCAAGAAAACCA-AAGAAAA--AT-CCTTGCTAC-AAGTGCGG-AAACTAGGACACTGGATC-AGTAAC-GTCCGG--AAGAACAAGCCGAGATAGATGCGATGA-T-CCCCCCGTACCTGGCTCAAAACCGCCCATCAAGAGATAGTACAAACCGTTAGAGATGTGGAA-CCGCGCCACACCTAAACAACCTACTGAA-AACACGCA-GAAAAAAAAGATGAAGCTTAGC-CGAAAGTAA----A-
gi|8 : GGATTT---C-----A-TGCAC-GGT--TTTA---------------ATAC-CAGGATTTTA----TACCGTTGGATTTTA-------G------TGAT-ACACATTCC-------TAAAAGTGCTA-ATTTAAGGAATTTGTTGACGTC-A-AATACTTTTC-ACTTCTC---GT-C-CA-CCGCTTGATG-CA-CAATAGCCAGT-AGCTCGTGCTCCAAACTGTGCTA-A--AACC---TGC--CACTCAAAC-TA--GGCTA-A-ATCA-----ATGC----AC-----T----------------------GCG-----CTCTCAA-----CT-AG----GCAGCC------T-A--------T-A---ACCCGG-------------------GCTA-----T--A---A-----A-CCGGGC-------TG--------G-----------------C--------GA-CCCTGCTGGGATCAAAACAGCTTGA-C-----ACCTAC---------------TTGACCCCCACTGA-CA-TG---------------TC-CG---ATG---A---CG-CC--AT-------------------C--------A--TTG-ACC--------------------A-----------------GCAAACCAGCGTCCTAGATATTGAAA-CCCCATCGGAGG-CGTTTATACTACTtgc
gi|9 : gtaCTC----CTGTGCTA-A--AACC---TGCACT-CT-AAAC-TATAGGCCA-A-GTCA-----AAAC----AC-----TGCG--CT-ATCAACCCGGCCG-GG------CTC---A-----CC-GG----G----T------T-A--------TAA---ACCCGGCCTCACCAG----------GCTA-----T--A---A-----ATCCGGTC-------TA--------G-----------------ca
gi|9 : GCTATA--AATC---CGG--T-CT-AGATATA--AACCA---GGC---------C----GG-----G-----CT-A-------GCCCA-GC------CTCTAAA-----CCCGGCTGTG----C------T-A--------TAA---ACCCGGCC------G---G------GCTA-----------------------GCC-------CG--------G-----------------C--------GACCCCTACTGGGGTC-AAACTGC--G---C---ACTC--CG--------------TTGA-CCCC-------------AA-----GCGTCCT--AGATATTG---AAC-CGGCC--ATGGA------GGCCCGAAACC--------GC-TTG-ACC--------------------AATCatataaaccaggccgggctagcccagcctctaaacccggctgtgctataaacccggccgggctagcccggcgacccctactggggtcaaactgcgcactccgttgaccccaagcgtcctagatattgaaccggccatggaggcccgaaaccgcttgaccaatcagaagtctccctgctttaccttatttgcataaaaagtgcactcagttgaaccgcctatgtattggcgttatacca
gi|9 : ctcctgtgctaaaacctgcactctaaactataggccaagtcaaaacactgcgctatcaacccggccgggctcaccgggttataaacccggcctcaccag----CTGTGCTATA--AACC---CGG--C-C--GGGC-TA--GCCCG-GCGAC---------------C-----C-----CT-A---------CTG-GG------GTC-AAA-----CT-GC----G----CACTCCGT----------TGA---CCCCAAGC------G---T------CCTAGATATT--G---A-----A-CCGGCCA------TG--------G-----------------A--------GGCCC--------G---AAACCGCTTGA-CC---AATCAGAAGTCTCCCTGC----TTTA-CCTTATTTG-CA-TAAAAA-----GTGCACTC-AG---TTG---AAC-CGCCT--ATGTATT----GG--------C--------GT-TAT-ACC--------------------Aagaagtctccctgctttaccttatttgcataaaaagtgcactcagttgaaccgcctatgtattggcgttatacca
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|16 ): GATGAAAAATGGAATAAGACAAGTGGGAAGAAGAAGACAGGGAAAAGGGGACGAATGCAACGAGATGTTCTTGAGCGCAATGATAGACAGGAAGGTACAGGAGGCTTACATGGCACAGGCAGCTGAAAAAGGGCAAGAC
Alignments
lowQualScore : 1 1 11 1 11 222222 444444444444 11 111 22222222 111 111 111111 333333333333 44444444444444 111111 3333333333333333 1111 22222 33333333 111 3333333333 11 111 66666666666666666666666666 11 2222222222222222 22222222222222222 2222 5555555555 2222 3333333 222222222 3333333 111111 222222 2222 2222222222 666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666 22222222222222222 111111111111111111 66666666666666666666666666666666666666666666 55555555555555 11111 111 3333333333333333333333333 88888888888888888888888888888888888888 1
lowQualScore : 0 2 0 11 0 8 3 22 66 0 11 8 8 1 0 333333 0 8 8 333333333333 0 88 444 3 88 8 1 444 8 4 8 0 1 1 22 88888888 6 222 1 3 6 111 1 88 555555 6 444444444444 1 3 33333333333333 1 5 666666 0 5555555555555555 77 3 5 2 5 5 3 1 5 0 66 1 1 77 0 4 0 1 0 5 5 0 0 1 5 66 5 8 1 9999 8 2222 5 88888 0 8 22222222 0 8 444 0000000000 8 77 44 5 1 77 99 111 9 55555555555555555555555555 7 00 99 1 1 2222222222222222 3 6 88888888888888888 99 6666 6 3 2222222222 0 999 4 4444 5 7777777 1 666666666 8 6 9999999 2 555555 1 6 000000 3 1 1111 8 55 1111111111 4 4 55 0 777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777 777 2 55555555555555555 777777777777777777 3 2 55555555555555555555555555555555555555555555 66 0 4 4 777 0 11111111111111 5 44 4 11111 4 777 222 4 88 66 0 1111111111111111111111111 5 6 22222222222222222222222222222222222222 7 3 6
lowQualScore : . . . .. . . . .. .. . .. . . . . ...... . . . ............ . .. ... . .. . . ... . . . . . . .. ........ . ... . . . ... . .. ...... . ............ . . .............. . . ...... . ................ .. . . . . . . . . . .. . . .. . . . . . . . . . . . .. . . . .... . .... . ..... . . ........ . . ... .......... . .. .. . . .. .. ... . .......................... . .. .. . . ................ . . ................. .. .... . . .......... . ... . .... . ....... . ......... . . ....... . ...... . . ...... . . .... . .. .......... . . .. . ...................................................................................................... ... . ................. .................. . . ............................................ .. . . . ... . .............. . .. . ..... . ... ... . .. .. . ......................... . . ...................................... . . .
lowQualScore : 0 5 0 00 8 0 6 22 44 6 00 0 0 4 8 000000 6 0 0 666666666666 6 66 666 8 88 0 4 000 0 6 0 8 4 4 00 33333333 7 888 0 2 7 777 5 88 000000 7 222222222222 7 0 00000000000000 6 7 444444 1 1111111111111111 99 0 7 3 7 7 9 7 7 1 99 0 3 11 7 3 7 7 7 3 7 1 7 7 7 44 0 6 0 6666 7 1111 7 33333 8 0 00000000 8 8 000 2222222222 0 99 99 7 3 00 22 777 8 33333333333333333333333333 3 00 22 0 4 0000000000000000 2 0 55555555555555555 22 7777 7 2 4444444444 6 333 3 3333 7 1111111 9 555555555 0 7 0000000 5 555555 0 7 777777 2 0 2222 0 55 9999999999 0 0 55 7 999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999 000 0 11111111111111111 666666666666666666 6 8 44444444444444444444444444444444444444444444 66 7 0 4 888 4 22222222222222 0 66 4 11111 4 888 222 4 66 11 1 3333333333333333333333333 7 7 22222222222222222222222222222222222222 3 3 7
consensus : CACCCAGAATCCT-ACAGAC-CCAGGCTTG--GGATTTT-TTTTCCCGGACATCCCGGAGTCACAAGATGT--AACGGGA-CTGGAA-CTGGGCCTCTACAA------CACT-C-AGAATGCATCG-------GAGACCT-CCGGCCATGAACAA-AGAAGATTTTGCGAT-CATTTC---CACC-ACGCTAGA-CGGGATCGTTAACCGCATTAATGTGCTGAGTGACGAGATTGGAAATCATACCACAATCCTACTGAAGAAGCTGGAAGAGCTGACGGNNAAAAA-------CCCCAGGAA-GGAATA-CGCTCCAGATTACGCTACTAACCCGTGCTACACTTG-TG---GAGAAACAGGACATTGGTCGCCG----G-ATTGCCCACAGAA-AA------------CAGATTCCCCGCAGACCAGTAAGAAA----T-CC-GG-T-GTC-AG------ATTCCCAG----------C-----AGACC--AGCAAGAAAACCA-AACAAAAGGAT-CCTTGCTAC-AAGTGCGGAAAACTAGGACACTGGATC-AGTGACTGTCCGG--AAGAACAAGCNGAGATAGATGCGATGATT-CCCCCCGTACCTGGCTCAAAACCGCCCGTGAAGAGAGAGTACAAACCGTTAGAGATGTGGAACCCGC-CCGCACCTAAACAAACCACTGAAGAAC-CGCC-GAAAAAGAAGANGAAACTNAGC-CGAAAGTAA----A-A-----CTGGACTGTGC-T----T-G-TGAACTGTTTNTA---TGCTTA-----C----TGAA-CTGTT--TNAAAACTGT-TTTAATAAAC--TG---TGCATTG--T-TC--------------TA----TGCTTTAATAAACATGTAAACTT--AAACCCTGNGCTATTCTTT-ACCAANCTTG-GATTTTATGCACTGGATTT---C-----A-TGCACTGGA--TTTA-GCGAT-ACACAGGAATACACAGGATTTTA----C-----TGGATTTTATGCCTTGGAT----CGAT-ACACATTCC-------TAAAAGTGCTACATTT------TTT-TTGACGTC-ATAATGC------ACTTCTCCAAGT-C-CAGCCGANTGACGTCA-CAATAGCCAGT-AGCTCGCGCTC----CTGTGCTA-A--AACC---CGC--T-CT-AAAC-TA--GGCCA-ACGGCA-----ATAC----GC-----T-----CT-A-------GGCCG-GC------CTCTAAA-----CC-GG----G----C------T-A--------TAA---ACCCGGCC------G---T------GCTA-----T--A---A-----A-CCGGCC-------TA--------G-----------------C--------GACCCCTGCTGGGGTC-AAACCGCTTGA-CC---AATCAGCA--------------TTGA-CCTCATTTG-CA-TAAAAA-----GTGCACTC-AG---TTG---AAC-CGCCC--ATGGA------GG--------C--------GC-TTG-ACC--------------------ACTCCG---TTGA-CCC-GCCAATCAGCGTCCTAGATATTGAACTCCCCAT-GGAGGCCGGTTATACTACT
Reference ( family-1393 ) : CACCCAGAATCCT-ACAGAC-CCAGGCTTG--GGATTTT-TTTTCCCGGACATCCCGGAGTCACAAGATGT--AACGGGA-CTGGAA-CTGGGCCTCTACAA------CACT-C-AGAATGCATCG-------GAGACCT-CCGGCCATGAACAA-AGAAGATTTTGCGAT-CATTTC---CACC-ACGCTAGA-CGGGATCGTTAACCGCATTAATGTGCTGAGTGACGAGATTGGAAATCATACCACAATCCTACTGAAGAAGCTGGAAGAGCTGACGGNNAAAAA-------CCCCAGGAA-GGAATA-CGCTCCAGATTACGCTACTAACCCGTGCTACACTTG-TG---GAGAAACAGGACATTGGTCGCCG----G-ATTGCCCACAGAA-AA------------CAGATTCCCCGCAGACCAGTAAGAAA----T-CC-GG-T-GTC-AG------ATTCCCAG----------C-----AGACC--AGCAAGAAAACCA-AACAAAAGGAT-CCTTGCTAC-AAGTGCGGAAAACTAGGACACTGGATC-AGTGACTGTCCGG--AAGAACAAGCNGAGATAGATGCGATGATT-CCCCCCGTACCTGGCTCAAAACCGCCCGTGAAGAGAGAGTACAAACCGTTAGAGATGTGGAACCCGC-CCGCACCTAAACAAACCACTGAAGAAC-CGCC-GAAAAAGAAGANGAAACTNAGC-CGAAAGTAA----A-A-----CTGGACTGTGC-T----T-G-TGAACTGTTTNTA---TGCTTA-----C----TGAA-CTGTT--TNAAAACTGT-TTTAATAAAC--TG---TGCATTG--T-TC--------------TA----TGCTTTAATAAACATGTAAACTT--AAACCCTGNGCTATTCTTT-ACCAANCTTG-GATTTTATGCACTGGATTT---C-----A-TGCACTGGA--TTTA-GCGAT-ACACAGGAATACACAGGATTTTA----C-----TGGATTTTATGCCTTGGAT----CGAT-ACACATTCC-------TAAAAGTGCTACATTT------TTT-TTGACGTC-ATAATGC------ACTTCTCCAAGT-C-CAGCCGANTGACGTCA-CAATAGCCAGT-AGCTCGCGCTC----CTGTGCTA-A--AACC---CGC--T-CT-AAAC-TA--GGCCA-ACGGCA-----ATAC----GC-----T-----CT-A-------GGCCG-GC------CTCTAAA-----CC-GG----G----C------T-A--------TAA---ACCCGGCC------G---T------GCTA-----T--A---A-----A-CCGGCC-------TA--------G-----------------C--------GACCCCTGCTGGGGTC-AAACCGCTTGA-CC---AATCAGCA--------------TTGA-CCTCATTTG-CA-TAAAAA-----GTGCACTC-AG---TTG---AAC-CGCCC--ATGGA------GG--------C--------GC-TTG-ACC--------------------ACTCCG---TTGA-CCC-GCCAATCAGCGTCCTAGATATTGAACTCCCCAT-GGAGGCCGGTTATACTACT
gi|1 : ACCCAGAATATG-ACAGAC-CCAGGCTTA--GGATTTT-TTT-CCCGGACTTCCCGGAGTCACCGAATGT--AACGGGA-CTGGAA-CTGGGTCTCTACAA------CACT-C-AGAATGCATTG-------GAAACC--ACAGCCATGAACAA-AGAAGATTTTGCGAA-CATTTC---CACC-ATGCTAGA-CGGGATCGTTAACCGCATTAATGTGCTGAGTGACGAAATTGGAAATCATACCAGAATCCTG-TAAAGAAGCTGGAAGAGCTGACAGCCAAAAA-------ACCCAGGAA-GGAATA-CGTCCCCGATTACGCTACTAACCCGTGCTACACCTG-TG---GAGCAACAGGACATTAATCACCG----G-ATTGCCCACAGAA-AA------------CATATTCCCCGCAAACCAGTAAGAAA----T-CCTGG-TCGTC-AG------ATTCCCAGAGTAAGAATTCACAGAAGACC--AACAAGAAAACTA-AACAAAAGAAT-CCTTGCTAC-AAGTGCGGAAAACTAGGACACTGGATC-AGTGACTGTCCGG--AAGAACAAGCTGAGATAGCTGCGATGATT-CCTCCAGTACCTGGCTCAAAACCGCCCGTGAAGAGAGAGTA-ACACCGTTAGAGATGGGGAACCCAC-CCGCACCTAAACAAACCAGTGAAAAAC-CACC-G-AAAAGAAGAAGATACTCAGC-AAAAAAT-A----A-A-----CTGGACTGTGC-T----TAG-TGAACTGTTTGTA---TGCTTAGTGAGCACTGTGAA-CTGTT--TAAAAACTGTGCTTAGTGAAA--TG---TGCATTG--T-TCTTGTTTCAAATGTTTA----TGCTTTAATAAACATGTAAACTTAAAAACCTTGTGTTATTATTTCACCCAGCTTGTGA-TTTAT-TA-TGGATTT---C-----A------TGGA--TTTA----AT-ACACAGGATTTCATAGGATGTTA----------TGCACTGCATG--TT--AT----CGA------ATTTT-------TAACAGTGCAACA-----------T-TTGACGTC-ATAATGC------ACTTCTCCAAGT-CAAAACCGCTTGACGTCA-CAATGGCCAGT-AGCTCGCGCTCCACGCTGTGCTA-A--AATCTG-CAC--T-CT-AAAC-TA--GGCTA-AT-ACA-----CTGC----GC-----C-----CTCAACCC---GGCCG-GG------CTC---A-----CA-GG----G----C------T-A--------TAA---ACCCGGCC------GGGCTCACAGGGCTA-----T--A---C-----A-CCGGCCGTGCTATTA--------ACCGATCGGGCTAACCGTC--------GACCCTTGCT-GGGTC-AACCCGCTTGA-CC---AATCAGAA--------------TTGA-CATCATTTG-CA-TAAAAA-----TTGCACTC--G---TTGA--AAC-CACCC--ATGGA------GG--------C--------GCGTTATACT--------------------ACT
gi|10 : ggctataaaagcagagtccccgctttcacttttcacatcgacttcagaccttgacctgagaacatggctcagaaacagctataattcgtggacagggctcagaagaaagtggataacatgatacagaaacagacagggcttcagaaagatgtcttgaaagaagaggacagacaagaggtacaggaggcttacattgcacatcagctgaaaaaggcgaagactgaggagtatctacctCCCCGCAGACCAGTAAGAAA----T-CCCGG-TTGTC-AG------ATTCCCAG----------C-----AGACC--AGCAAGAAA-CCA-AAGAAAAGGAT-CCTTGCTAC-AAGTGCGGAAA-CTAGGACACTGGATC-AGTAACTGTCCGG--AAGAACAAGCCGAGATAGATGCGATGAT--CCCCCCGTACCTGGCTCAAAACCGCCCATCAAGAGATAGTACAAACCGTTAGAGATGTGGAACCCGC-CCACACCTAAACAACCTACTGAAAAAC-CGCA-GAAAAAGAAGATGAGCTTTAGC-C--AAGTTA----A-A-----
gi|11 : aaatcatccG--AAGAACAAGCTGAGATAGAAGCAATGATG-TCCCCGGTTCC----------CTGC-----AAGAGAGGGTACAAACCTTGAGAGATGTGGAAACCTC-CAGCGCCTAAA-AGACCACTGAAGAAC-CGCA-GAAAAAGAAGAGGAAACTAAGT-AGAAATTAATGTTA-AACT--CTGGAC---GG-T----T-A-TAAACTG--TGAA---CTCTTA-----C----AAAAGCTGT------AAACTGT-T---ATAAGC--TG---TGAACTG--TGTT--------------TATGGGTGGTTTAAAAAAAATGAAGATTT--tgcttga
gi|12 : GGAACCATACAAGAATCCTACTCAAGAAGCTGGGAGAGCTGAAGTAGAAAAA-------CCCCATGAATGAAATA----TCCA----------CTAACCTCTGCTGCACTTG-TA------AAACAG--------------------ATTGCCCACAAAA-AA------------C------------------CAAGAAA----A-CCTGG-T-CTCTAA------ATTCTTCG----------C-----AGAAA--ACCAAGAAAACTAGAACGAA-GGAC-CCTTGCTAC-AAGTGCGGTAAACTTGGACATTGGATC-AACAATTGTCCGG--AAGAACAAGC
gi|13 : -ATAATGCTTTTTCACTTCTCCAAGT-C-CAGCCGAATGACGTCA-CAATAGCCAGT-AGCTCGCGCTT----CTGTGCTA-A--AACCTTGCAC--T-CT-AAAC-TA--GGCTA-A----A-----ACAC----TC-----TCAA--CT-A-------GGCCA-GC------CTATAAA-----CC-AG----G----G------T-A--------TAC---ACCAGCCC------G---T------GCTC-----T--A---A-----A-CCGGGC-------TA--------G--------------------------GACCCCTGCTGAGGTC-AAACCGCT
gi|14 : actgcttgttatagcatagaggaacattggatgagcaaatT--TCAAACCTGT-GTTCA---AC--TG---TGC-TTA--A-AC--------------TC----TGCTTTAATA--CAT--AAGCTT--AAACCCTGAGCTATTCTT--ACCAATCTTG-GATTTTATGCACTGGAATT---T-----ATTGC-TTGGA--TTTA-GCGAT-ACACA
gi|14 : tccGGATTTTATGCAC-----TGGAATTTATTGCTTGGATTTAGCGAT-ACACATTCCGAGACTTTAAAAGTGCTACATTttccgagactttaaaagtgctacatt
gi|15 : tccttcaaacctgtgttcaactgtgcttaaactctgctttaatacataagcttaaaccctgagctattcttaccaatcttT--TCAAACCTGT-GTTCA---AC--TG---TGC-TTAAAT-GC--------------TG----TGCTT-AATA--CAT--AAGCTT--AAACCCTGAGCTATTCTT--ACCAATCTTG-GATTTTATGCACTGGAATT---T-----A-TGCCTTGGA--TTTA-GCGAT-ACACA
gi|15 : ccGGATTTTATGCAC-----TGGAATTTATGCCTTGGATTTAGCGAT-ACACATTCCGAGACTTTAAAAGTGCTACATTttccgagactttaaaagtgctacatt
gi|17 : ccttcaaacctgtgttcaactgtgcttaaatgctgtgcttaatacataagcttaaaccctgagctattcttaccaatcttCCAACC------G---C------ACTA-----T--GTTGA-----A-CCAGCC--------A--------T-----------------C--------TACCCCACCT---------ACC-CTCGA-CC---AATCAGAA--------------ATGA-CCTCAC--------AAAAA-----GTGCACTT-AG---TTA---AAC-CAGCC--ATAGA------GG--------C--------AC-CT
gi|18 : acctCACTTT-CACTCAAAA-----GTGCACTC-AG---TTG----AC-CTCCC--ATTGG------GG--------tatacta
gi|2 : CACTCAGAATCCT-ACA-AC-CCAGGCTTG--GG-TTTT-TTTTCCCGGAGATTC-AGAGGCACAAGATGT--CACGGGA-CTGGAA-CTGGGCCTCT-CAA------CCCT-CCAGAATG-------------AGCCCTTCCGGCCA--GACAA--GAAGACTTTGCGATTCATTAC---CACCGACATAAGA-CGGGATTGTTA--CGCATTAATGTGCTGCGTAATGAGATTGGAAATCATACCACCGTCCTGCTGAAGAAGCTGGAAGACCTGACGGGGAAAAATCTAGATCCCTAGGAA-GAACTATCACTCCAGATTCGGCTA-TAACCCGTGCTCAACTTGTTGCGTGTGAAACAGGGCATTGGTCGCCG----GTATTGCCCCCAGAATAG------------CAGATTTCCCGCA-ACCAGTAAGAAAGATTT-TC-GC-A-GAC-AGTAAGAAATCGCCGA----------T-----A-ACCAGAGAAAGAAAA-CA-AACAACGGGATCCCTTGC-ACAAAGTGCGGGAAATT-GGACACTGGATCAAGTGACTGTCCGGAAAAGAA-AAGCGGAG-TCGATGAGATGATTGGGCCCCGTAACTGGCTCAAAACC-CGCTTGAAGAGAGAGTACAAACCGCTAGAGA-GT----CCCCT-CCGC----------ACTACTGAAGAA--CGCCTTAAAAAGAAGA-GCAACTGAGCACG-AAGTAA----A-AAAAACTTGAACTGTTT-TTTTAT-GCTGAACTGTTT-TACATTGATAA-----C----TGAA-CTGTT--TTTATGCTG--TTTAATAAAC--TGGTTTGAGTTG--T-----------------------TGCTTTAATAAACATGTAAACTT--AAAACCTGGTGTAGTCTTT-ATTATGCT---GAGCGAATACAC-AGATTTAAACAAGGAA-TAGACTGGATTTTTATGCGATGATACAGGAATACACAGGA--ACA----C-----TGGATTTTATGC----GAT----CGATAACACATTCC-------TAAGTGTGATACA---------TTT-ATGACGTCAATAATG--------TCTCTCAAGGT------CCGATT--TTTCAGAAATAG-CATTCAGC-----CTT----TTTCACGA-ATCAA------GC-------GAAG-TA--GATCC-ACGGCA-----ATATA---GCCAACTT-----AT-A-------TAACC-GC------CTCTAAA-----CC-AGCCGTG----C------T-A--------TAA---TACCG---------G---T------ACTC-----T--A---A-----A-CCGG-C-------TA--------G--------------------------GACCCCTGCTGGGGTC-AAAC----TGA-CC---g
gi|2 : ttttcacattttacacctgcaaccagagaacatggctctagatgaacaggctagaattcgtggacagagtcagaagaagtgaataacatggtacgaaaaagacgggaatgcaacaggagatttcttggcgaagcaaacagttagacagggtacatgagcttacattggcacagcagctgataaaaggcaaggactgaggatttctaatacgctTA-T--AACC---GCC--T-CT-AAAC-CA--G-CCGTGCTATA-----ATACCGGTAC-----T-----CT-A-------AACCG-GCTAGGACCCCTG-------CT-GG----G----G------T-C--------AAACTGACCCGTCT------A---T------GCTA-----TTTG---A-----A-CCG-CC-------CA--------T-----------------C--------GAGCCCTG---------AAAACGCTTGAACCTCAAGTCAGCAAGAACCGCATCTGCTTGA-CCTCATTTGTCA-TAAAAACAACGGTGCACTCAAG---TTGTGAAAC-CTCCCCTATGGA------GG--------cgtctatgctatttgaaccgcccatcgagccctgaaaacgcttgaacctcaagtcagcaagaaccgcatctgcttgacctcatttgtcataaaaacaacggtgcactcaagttgtgaaacctcccctatggagggcggaggctactaa
gi|3 : ttttcacattttacacctgcaaccagagaacatggctctagatgaacaggctagaattcgtggacagagtcagaagaagtgaataacatggtacgaaaaagacgggaatgcaacaggagatttcttggcgaagcaaacagttagacagggtacatgagcttacattggcacagcagctgataaaaggcaaggactgaggatttctaatacgctcactcagaatcctacaacccaggcttgggttttttttcccggagattcagaggcacaagatgtcacgggactggaactgggcctctcaaccctccagaatgagcccttccggccagacaagaagactttgcgattcattaccaccgacataagacgggattgttacgcattaatgtgctgcgtaatgagattggaaatcataccaccgtcctgctgaagaagctggaagacctgacggggaaaaatctagatccctaggaagaactatcactccagattcggctataacccgtgctcaacttgttgcgtgtgaaacagggcattggtcgccggtattgcccccagaatagcagatttcccgcaaccagtaagaaagattttcgcagacagtaagaaatcgccgataaccagagaaagaaaacaaacaacgggatcccttgcacaaagtgcgggaaattggacactggatcaagtgactgtccggaaaagaaaagcggagtcgatgagatgattgggccccgtaactggctcaaaacccgcttgaagagagagtacaaaccgctagagagtcccctccgcactactgaagaacgccttaaaaagaagagcaactgagcacgaagtaaaaaaaacttgaactgtttttttatgctgaactgttttacattgataactgaactgtttttatgctgtttaataaactggtttgagttgttgctttaataaacatgtaaacttaaaacctggtgtagtctttattatgctgagcgaatacacagatttaaacaaggaatagactggatttttatgcgatgatacaggaatacacaggaacactggattttatgcgatcgataacacattcctaagtgtgatacatttatgacgtcaataatgtctctcaaggtccgatttttcagaaatagcattcagcctttttcacgaatcaagcgaagtagatccacggcaatatagccaacttaCACTCAGAATCCT-ACAGAC-CCAGGCTTG--GGATGTT-TTCCCCCGGAGATTCCAGAGTCACAAGATGT--AACAGGG-CTGGAA-CTGGGGCTCTACAA------CCCT-C-AGAATG--------------AACCT-CCGAACCTGAACAA-AGAAGATTTTGCGAT-CATTAC---CACG-ACACTAGA-CGGGATCGTTAACCGCATTAATGTGCTGAGTAATGAGATTGGAAATCATACCACAGTCCTACTGAAGAAGCTGGAAGAGCTGACGGGTAAAAA-------GCCTAGGAA-GGAATA-CACCTCAGATTACGCTACTAAACCGTGTTACACTTG-TG---GACAAACAGGACATTATTCGCCG----G-ATTGCCCACAGAA-AA------------CAGATTATCCGCAGACCAGTAAGAAA----T-------T-GGC-AG------ATTCCCAC----------C-----AGACT--AGCAAGAAAACCA-AACAAAGGGAT-CCTTGCTAC-AAGTGCGGAAAATTAGGACACTGGATC-AGTGAACGTCCTG--AAGAACAAGCGGAGATAGCCGAGATGATT-GGTCCCGTACCTGGCTCAAAACCCACTGTGAAGAGAGAGTACAAACCGTTAGAGATGTGGAATCCGC-CCGTACCTAAACAAACCAGTGAAGAAC-TACC-G-AAAAGAAGAAGAAACTTAGC-CGAAAGTAA----ATA-----CGGGACTGTGC-T--------TGAACTGTTTTTA---TGCTTA-----T----TCAA-CTATT--TAAAAACTGT-TTTAA-AAACATTG---TGCATTG--T-TC--------------TA----TGCTTTAATAAACATGTAAACTT--AAACCTTGTGTTATTCTTT-A--------------TTATGCACAGGATTT---C-----A-TACACAGGA--TTTA----AT-ACACAGGAATACATAGGATTTTA----C-----TGGATTTTATCCCTTGGAT----CGAT-ACACATTCC-------TAAGTGTGCTACATTT------TTT-TTGACGTC-ATAATGC---------TCTCCAAGTCC-CAACCGAATGACGTCA-TAATAA--A----------GCTC----CTGTGCTA-A--AAC------C--T-CT-AAAC-TA--GGCCA-GCGGCA-----ATAC----AC-----T-----CT-A-------GGCCG-AC------CTATAAA-----CC-GG----G----C------T-G--------TAA---ACCCGGCC------A---T------GCTA-----T--A---A-----A-CAGGCC-------TA--------G--------------------------GACCCCTGCTGGGGTC-AAATCGCTTGA-CC---AATCAGCA--------------TTGA-CCTCATTTG-CA-TAAAAA-----GTGCACTC-AG---TTG---ACC-TCCCT--ATGGA------GG--------C--------GC-TTG-ACC--------------------ACTCCG---TTGACCCC-GCCAATCAGCGTCCTAGATATTGAACTCCCTAT-CGAAGCGGGTTATACTACTgcggaggctactaa
gi|4 : GGCTTG--GGATTAT-TTT-CCCGAACATCCCGGAGTCACAAGATGT--AACGGGA-CTGGAA-CTGGGCCTCTACAA------CACT-C-AGAATGTATCG-------GAGACC--CCGGTCATGAACAA-AGAAGATTTTGCGAT-CATTTC---CACT-ACACTAGA-CGGGATCGTTAACCGCATTAATGTGCTGAGTGACGAAATTGGAAATCATACCACAATCCTACTGAAGAAGCTGGAAGAGCTGACGCCTAAAAA-------CCCCAGGAA-GGAATA-CGTTCCCAATTACGCTACTAACCCGTGCTACACTTG-TG---GAGAAACAGGACATTGGTCGCCG----G-ATTGCCCACAGAA-AA------------CAGATTTCCCGCAGACCAGTAAGAAA----T-C---------C-AG------AT----------------------AAAAC--A-----AAAACCA-AACAAAAGGAT-CCTTGCTAC-AAGTGCGGAAAATTAGGACACTGGATC-AGTGACTGTCCAA--AAGAACAAGCGGAGATAGCTGCGATGATT-CCTCCAGTACCTGACTCAAAACCCCCTGTGA--AGAGAGTACAAACAGTTAGAGATGTGGAATCCGC-CCGCACCTAAACAAACCACTGAAGAAC-CACC-GAAAAAGAA---GAAACTCAGC-AAAAAGT-A----A-A-----CTGGACTGTGCTT----T-G-TGAACTGTTTTTA---TGCTTA-----C----TGAA-CTGTTACTGTGAACTGT-TTAAAac
gi|5 : GGGTTTTA----TGCAG-CGGATTTTATGCCTTGGAT----CGAT-ACACATTCC-------TACACGTACTACATTT------TTT-TTTACGTC-ATAATGC------ACTTCTCCAAGG-C-TAGCCGAATGACGTCA-CAATAG------AGCTCGCGCTC----CTGTGCTA-A--AACCTG-CAC--T-CT-AAAC-TA--GGCCA-ACGGCAATTTGATAC----AC-----TCTCAACT-A-------GGCCATACG-----CTCTAAACCCGGCC-GG----G----C------TCACCGGCCTCTAA---ACTCGGCC------A---T------GCTA-----T--A---ATCCCGA-CCGGGC-------TATAAACCCGG-----------------CCGGACTAGGACCCCTGCTGTGGTC-AAACCTCTTGA-CC---AATCAGCA--------------TTGA-CCTCATTTG-CA-TAAAAA-----GTGCACTC-AG---TTG---AACTCG-CT--ATGGAAACCGGGG--------CCAGGTCAAGC-TTG-ACCCCCACTGCGCATGTGCGATGACCCCGCCATTGA-CCCAGCCAATCAGCGTCCTAGATATTGAACTCGCCAT-GGAGGCCGGTTATACTACT
gi|6 : CCAGAATCCTTACAGACTCCAGGCTTCATGGATTTTATTTTTCCTGACA---------CACAGGATGGCAAACCGGATCTGGAAACTAGGTCTCTATAATCTCCTCACTAC-AGAATGCATCGCGAACTAGAGCCCT-CC---CACTGACAAGATAACATTTC-CGCT--ATTTCACATACC-ACTCTAGAACAAGATAGTAAACAAGATTAATGGACTGGTCGAGGATATTGGTAAtccgt
gi|7 : gctataaaaatcaggccagatgtcctacacttcaatccgacttcagacagtgagcagacaacataggcacagaaacgggctagattttgtgcgacagaagttcagaagaaagtcaatagatagtacacacttcagtatcagttgggtcccagaaatatttacttgagtgaaagaggacagatatgagccttacatgctggcacatccagctaaaaaaggcgcaggaacaagccaatggttatatagGAAAAAGATGGAAGAGCTGACAGCGAAAAA--------------------------CTCCAGA-TACGCCACT-ACCCGAGCTACACTTG-TG---GAGAAATAGGCCATT-GTCACCGGATTG-ATTGCCTGCAGAA-AACTAAGAAAACCTCAGATTCCCCGCAGACCAGTAAGAAA----TCCC-GGTT-GTC-AG------ATTCCCAG----------C-----AGACC--AGCAAGAAAACCA-AAGAAAA--AT-CCTTGCTAC-AAGTGCGG-AAACTAGGACACTGGATC-AGTAAC-GTCCGG--AAGAACAAGCCGAGATAGATGCGATGA-T-CCCCCCGTACCTGGCTCAAAACCGCCCATCAAGAGATAGTACAAACCGTTAGAGATGTGGAA-CCGCGCCACACCTAAACAACCTACTGAA-AACACGCA-GAAAAAAAAGATGAAGCTTAGC-CGAAAGTAA----A-
gi|8 : GGATTT---C-----A-TGCAC-GGT--TTTA---------------ATAC-CAGGATTTTA----TACCGTTGGATTTTA-------G------TGAT-ACACATTCC-------TAAAAGTGCTA-ATTTAAGGAATTTGTTGACGTC-A-AATACTTTTC-ACTTCTC---GT-C-CA-CCGCTTGATG-CA-CAATAGCCAGT-AGCTCGTGCTCCAAACTGTGCTA-A--AACC---TGC--CACTCAAAC-TA--GGCTA-A-ATCA-----ATGC----AC-----T----------------------GCG-----CTCTCAA-----CT-AG----GCAGCC------T-A--------T-A---ACCCGG-------------------GCTA-----T--A---A-----A-CCGGGC-------TG--------G-----------------C--------GA-CCCTGCTGGGATCAAAACAGCTTGA-C-----ACCTAC---------------TTGACCCCCACTGA-CA-TG---------------TC-CG---ATG---A---CG-CC--AT-------------------C--------A--TTG-ACC--------------------A-----------------GCAAACCAGCGTCCTAGATATTGAAA-CCCCATCGGAGG-CGTTTATACTACTtgc
gi|9 : gtaCTC----CTGTGCTA-A--AACC---TGCACT-CT-AAAC-TATAGGCCA-A-GTCA-----AAAC----AC-----TGCG--CT-ATCAACCCGGCCG-GG------CTC---A-----CC-GG----G----T------T-A--------TAA---ACCCGGCCTCACCAG----------GCTA-----T--A---A-----ATCCGGTC-------TA--------G-----------------ca
gi|9 : GCTATA--AATC---CGG--T-CT-AGATATA--AACCA---GGC---------C----GG-----G-----CT-A-------GCCCA-GC------CTCTAAA-----CCCGGCTGTG----C------T-A--------TAA---ACCCGGCC------G---G------GCTA-----------------------GCC-------CG--------G-----------------C--------GACCCCTACTGGGGTC-AAACTGC--G---C---ACTC--CG--------------TTGA-CCCC-------------AA-----GCGTCCT--AGATATTG---AAC-CGGCC--ATGGA------GGCCCGAAACC--------GC-TTG-ACC--------------------AATCatataaaccaggccgggctagcccagcctctaaacccggctgtgctataaacccggccgggctagcccggcgacccctactggggtcaaactgcgcactccgttgaccccaagcgtcctagatattgaaccggccatggaggcccgaaaccgcttgaccaatcagaagtctccctgctttaccttatttgcataaaaagtgcactcagttgaaccgcctatgtattggcgttatacca
gi|9 : ctcctgtgctaaaacctgcactctaaactataggccaagtcaaaacactgcgctatcaacccggccgggctcaccgggttataaacccggcctcaccag----CTGTGCTATA--AACC---CGG--C-C--GGGC-TA--GCCCG-GCGAC---------------C-----C-----CT-A---------CTG-GG------GTC-AAA-----CT-GC----G----CACTCCGT----------TGA---CCCCAAGC------G---T------CCTAGATATT--G---A-----A-CCGGCCA------TG--------G-----------------A--------GGCCC--------G---AAACCGCTTGA-CC---AATCAGAAGTCTCCCTGC----TTTA-CCTTATTTG-CA-TAAAAA-----GTGCACTC-AG---TTG---AAC-CGCCT--ATGTATT----GG--------C--------GT-TAT-ACC--------------------Aagaagtctccctgctttaccttatttgcataaaaagtgcactcagttgaaccgcctatgtattggcgttatacca
blockSeqs : T G T AT A T TT CA CA T A C TCTCCT A C CATCGCGAACTA TT GGC T GA T A ACA G A A T G AG TCTAGATC T TCA G T T CGT G GG GATTG T CTAAGAAAACCT C G GATTTTCGCA T T TAAGAA C AG G G A C A A A A AA C A TG G A C G A A CT A T T AGA T TGTT T AAAAC T TTTATGC G CAT C G AC CA . C TA AT GTT A TGTTTATGGG A GA . A C ACCAATCTTGGAT G T AAACAAGGAATAGACT TT TGCG G A TACCGT TGC G TTAG A GAGACTT A TTTAAGGAA G A TTTTTCA C CCCAA A G CCAGT T C CAAA T TC TTGCACT C A TA ACGGCAATTTGATACACTCTCAACTAGGCCATACGCTCTAAACCCGGCCGGGCTCACCGGCCTC CTG C TCACCAG TAATCCCG T G TATAAACCCGGCCGGACTAG GA A A TCA AGAACCGCATCTGC C GT C CAACG A ATA TGA T AG CT AACCGGGGCCAGGTCAA . . CCCACTGCGCATGTGCGATGACCCCGCCATTGACCCA T C C
blockSeqs : . G . . . C TT CG . . . G . . . TATCG T GAA T A . A . . A . T G GG C . CA G T . . A AT GT . . T G TCCCGGTT T . . C . C . G . . T T . . T A G G T A . G . A A G A ACG A . . ACT . TA T . C . . CA . C TA . . G AATGCTG A GT . A C ACCAATCTTGGAT G T TATTGCTT . GCG . A TGCAC GCC G TTAG . GAGACTT A TTT . . TTTTCA A CCAG T . CATTC T C . T . TGCACT . . . ACGGCAATATAGCCAACTTATATAACCGCCTCTAAACCAGCCGTGCTA . A GT GATATTGA . C ATGGA GG . . . GTCTCCCTGC . T . . . . . . TC . GGCCCGAAACC . . A . . .
blockSeqs : . . . . . T TC A . . . C . . . . T GGT C A . T . . A . C A GT G . CG A T . . A GG G . . A G TCCCGGTT A . . T . G . G . . G A . . G A T C G C . G . A A A G CGA A . . . . TG T . T . . TT . A A . . A AACTC A GT . G G TATTATGCTGAG A A TATGCCTT . GCG . . TGCAC CCC G . . . T TTT . . A C CTAG A . CCAGT T T . . . TGCACT . . . TGCTATAATACCGGTACTCTAAACCGGCTAGGACCCCTGCTGGGGTC . T GC TGTTGA . C CATC GG . . . . . G . . . . . . TC . TTGGC . .
blockSeqs : . . . . . . . . T . . . . . . . . . T . . T . G T CT C . . G . . . C G G . . T G ACCTGGT G . . C . G . A . . A A . . G C T C G T . G . C A T T AAA A . . . . . . . C . . AA . A . . . . TTCTA . . . T T TA G . CATACACA . . . TGCAG GCC G . . . T . . . . C CCA A . A . . . . . TGCCA . . . AGTCAAAACACTGCGCTATCAACCCGGCCGGGCTCACCGGGTTA . G GT TTTGA . C TGGC GT . . . . . G . . . . . . CC . GGC . .
blockSeqs : CG . . . . . . . . . . . . C . TT T . . C . G . A . . A A . . G C T G A T . G . C A . C CGA A . . . . GT . A . . . . T . . . CATGCAC . . . C GC . . . . C . . . . T . . . . . . . GCCT . . . GCGGCAATACACTCTAGGCCGACCTATAAACCGGGCTG . G AT TAA . G CGGC GG . . . . . A . . . . . . GG . GGC . .
blockSeqs : . . TC . . . . . . . . . . . . . . C A . . . . . . . A . . T C . . . . . . . C . . . . . A . . . CGGT . . . AAACACTCTCAACTAGGCCAGCCTATAAACCAGGGTA . G AT TAA . G TAG GG . . . . . G . . . . . . GC . C .
blockSeqs : . . . . CGGC . . . GGCCGGGCTAGCCCAGCCTCTAAACCCGGCTGTGCTA . G AT TAA . T ATC . . . . . . . . . . . . . G .
blockSeqs : . . GC . . . AATCAATGCACTGCGCTCTCAACTAGGCAGCCTA . G GG TAA . C TAG . . . . . . . . . . . G .
blockSeqs : . . CT . . . GCGACCCCTACTGGGGTCAAACTGCGCACTCCGT . A GT TAA . C TAG . .
blockSeqs : . . . . .
blockSeqCons : ************ T* C*************** TG****** C********* A* TNCTN********************* ** ACCACTTGGA****** TATNCCTT********* GCG* TGCGC***** NCC TTT****** A****** CCAG** **** CGCCT***** GT*************** TGGC**************************************** GG ***
originalCons : CACCCAGAATCCT-ACAGAC-CCAGGCTTG--GGATTTT-TTTTCCCGGACATCCCGGAGTCACAAGATGT--AACGGGA-CTGGAA-CTGGGCCTCTACAA------CACT-C-AGAATGCATCG-------GAGACCT-CCGGCCATGAACAA-AGAAGATTTTGCGAT-CATTTC---CACC-ACGCTAGA-CGGGATCGTTAACCGCATTAATGTGCTGAGTGACGAGATTGGAAATCATACCACAATCCTACTGAAGAAGCTGGAAGAGCTGACGGNNAAAAA-------CCCCAGGAA-GGAATA-CGCTCCAGATTACGCTACTAACCCGTGCTACACTTG-TG---GAGAAACAGGACATTGGTCGCCG----G-ATTGCCCACAGAA-AA------------CAGATTCCCCGCAGACCAGTAAGAAA----T-CC-GG-T-GTC-AG------ATTCCCAG----------C-----AGACC--AGCAAGAAAACCA-AACAAAAGGAT-CCTTGCTAC-AAGTGCGGAAAACTAGGACACTGGATC-AGTGACTGTCCGG--AAGAACAAGCNGAGATAGATGCGATGATT-CCCCCCGTACCTGGCTCAAAACCGCCCGTGAAGAGAGAGTACAAACCGTTAGAGATGTGGAACCCGC-CCGCACCTAAACAAACCACTGAAGAAC-CGCC-GAAAAAGAAGANGAAACTNAGC-CGAAAGTAA----A-A-----CTGGACTGTGC-T----T-G-TGAACTGTTTNTA---TGCTTA-----C----TGAA-CTGTT--TNAAAACTGT-TTTAATAAAC--TG---TGCATTG--T-TC--------------TA----TGCTTTAATAAACATGTAAACTT--AAACCCTGNGCTATTCTTT-ACCAANCTTG-GATTTTATGCACTGGATTT---C-----A-TGCACTGGA--TTTA-GCGAT-ACACAGGAATACACAGGATTTTA----C-----TGGATTTTATGCCTTGGAT----CGAT-ACACATTCC-------TAAAAGTGCTACATTT------TTT-TTGACGTC-ATAATGC------ACTTCTCCAAGT-C-CAGCCGANTGACGTCA-CAATAGCCAGT-AGCTCGCGCTC----CTGTGCTA-A--AACC---CGC--T-CT-AAAC-TA--GGCCA-ACGGCA-----ATAC----GC-----T-----CT-A-------GGCCG-GC------CTCTAAA-----CC-GG----G----C------T-A--------TAA---ACCCGGCC------G---T------GCTA-----T--A---A-----A-CCGGCC-------TA--------G-----------------C--------GACCCCTGCTGGGGTC-AAACCGCTTGA-CC---AATCAGCA--------------TTGA-CCTCATTTG-CA-TAAAAA-----GTGCACTC-AG---TTG---AAC-CGCCC--ATGGA------GG--------C--------GC-TTG-ACC--------------------ACTCCG---TTGA-CCC-GCCAATCAGCGTCCTAGATATTGAACTCCCCAT-GGAGGCCGGTTATACTACT
finalCons : CACCCAGAATCCT-ACAGAC-CCAGGCTTG--GGATTTT-TTTTCCCGGACATCCCGGAGTCACAAGATGT--AACGGGA-CTGGAA-CTGGGCCTCTACAA------CACT-C-AGAATG------------GAGACCT-CCGGCCATGAACAA-AGAAGATTTTGCGAT-CATTTC---CACC-ACGCTAGA-CGGGATCGTTAACCGCATTAATGTGCTGAGTGACGAGATTGGAAATCATACCACAATCCTACTGAAGAAGCTGGAAGAGCTGACGGNNAAAAA-------CCCCAGGAA-GGAATA-CGCTCCAGATTACGCTACTAACCCGTGCTACACTTG-TG---GAGAAACAGGACATTGGTCGCCG----G-ATTGCCCACAGAA-AA------------CAGATTCCCCGCAGACCAGTAAGAAA----T-CC-GG-T-GTC-AG------ATTCCCAGC---------------AGACC--AGCAAGAAAACCA-AACAAAAGGAT-CCTTGCTAC-AAGTGCGGAAAACTAGGACACTGGATC-AGTGACTGTCCGG--AAGAACAAGCNGAGATAGATGCGATGATT-CCCCCCGTACCTGGCTCAAAACCGCCCGTGAAGAGAGAGTACAAACCGTTAGAGATGTGGAACCCGC-CCGCACCTAAACAAACCACTGAAGAAC-CGCC-GAAAAAGAAGANGAAACTNAGC-CGAAAGTAA----A-A-----CTGGACTGTGC-TTG------TGAACTGTTTNTA---TGCTTAC---------TGAA-CTGTT--TNAAAACTGT-TTTAAA-AAC--TG---TGCATTGTNCTN---------------------TGCTTTAATAAACATGTAAACTT--AAACCCTGNGCTATTCTTACCACTTGGA------TTTATGCACTGGATTTTATNCCTT---------GGA--TTTAGCG-AT-ACACAGGAATACACAGGATTTTATGCGC-----TGGATTTTATNCCTTGGAT----CGAT-ACACATTCC-------TAAAAGTGCTACATTT------TTT-TTGACGTC-ATAATGCA------CTTCTCCAAGTCCAG--CCGANTGACGTCA-CAATAGCCAGT-AGCTCGCGCTC----CTGTGCTA-A--AACCCGCCT-----CT-AAAC-TA--GGCCA-ACGGCA-----ATAC----GC-----T-----CT-A-------GGCCG-GC------CTCTAAA-----CC-GG----G----C------T-A--------TAA---ACCCGGCCGT---------------GCTA-----T--A---A-----A-CCGGCCTGGC----------------------------------------GACCCCTGCTGGGGTC-AAACCGCTTGA-CC---AATCAGCA--------------TTGA-CCTCATTTG-CA-TAAAAA-----GTGCACTC-AG---TTG---AAC-CGCCC--ATGGA------GG--------C--------GC-TTG-ACC--------------------ACTCCG---TTGA-CCC-GCCAATCAGCGTCCTAGATATTGAACTCCCCAT-GGAGGCCGGTTATACTACT
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|16 ): GATGAAAAATGGAATAAGACAAGTGGGAAGAAGAAGACAGGGAAAAGGGGACGAATGCAACGAGATGTTCTTGAGCGCAATGATAGACAGGAAGGTACAGGAGGCTTACATGGCACAGGCAGCTGAAAAAGGGCAAGAC
Alignments
lowQualScore : 1 1 11 1 11 222222 8888888888888 11 111 22222222 111 111 111111 333333333333 5555555555555555555555 444444444 4444444444444444 11 1111 22222 3333333 111 3333333333 111 11111 111 66666666666666666666666666 11 5555555555555555555555 44444444444444444 3333333 2222 11 2222222222222 3333333 2222222222 4444444 1111 222222 111111111 111 6666666666666666666666666666666666666666666666 111111 111111111 22222222222222222222222 22222222222222222 111111111111111111 5555555555555555555555555555555555555555555555 55555555555555 11111 111 3333333333333333333333333 88888888888888888888888888888888888888 1
lowQualScore : 0 2 0 11 0 8 3 22 66 0 11 8 8 1 0 333333 0 8 8 4444444444444 88 88 3 88 8 1 444 8 4 8 0 1 1 22 88888888 6 222 1 3 111 6 1 88 555555 6 444444444444 1 0000000000000000000000 0 444444444 5 1 0000000000000000 4 6 1 5 2 5 5 3 1 5 0 66 1 1 1 5 0 4 0 1 0 5 5 0 1 1 5 0 00 8 1 888 8 2222 5 88888 0 8 2222222 0 8 444 0000000000 8 77 44 444 66 22222 111 9 33333333333333333333333333 7 00 99 1 1 4444444444444444444444 3 6 1 66666666666666666 0000000 6 1111 3 1 00 5555555555555 5 7777777 1 8888888888 6 3333333 2 6 4444 1 6 000000 3 1 333333333 8 66 4 77 4 666 4 4 55 0 3333333333333333333333333333333333333333333333 3 777777 444444444 3 66666666666666666666666 666 1 55555555555555555 333333333333333333 3 3 4444444444444444444444444444444444444444444444 66 0 4 4 777 0 11111111111111 5 44 4 11111 4 777 222 4 88 66 0 1111111111111111111111111 5 6 22222222222222222222222222222222222222 7 3 6
lowQualScore : . . . .. . . . .. .. . .. . . . . ...... . . . ............. .. .. . .. . . ... . . . . . . .. ........ . ... . . ... . . .. ...... . ............ . ...................... . ......... . . ................ . . . . . . . . . . . .. . . . . . . . . . . . . . . . . .. . . ... . .... . ..... . . ....... . . ... .......... . .. .. ... .. ..... ... . .......................... . .. .. . . ...................... . . . ................. ....... . .... . . .. ............. . ....... . .......... . ....... . . .... . . ...... . . ......... . .. . .. . ... . . .. . .............................................. . ...... ......... . ....................... ... . ................. .................. . . .............................................. .. . . . ... . .............. . .. . ..... . ... ... . .. .. . ......................... . . ...................................... . . .
lowQualScore : 0 5 0 00 8 0 6 22 44 6 00 0 0 4 8 000000 6 0 0 2222222222222 66 66 8 88 0 4 000 0 6 0 8 4 4 00 33333333 7 888 0 2 777 7 5 88 000000 7 222222222222 7 7777777777777777777777 7 333333333 7 7 0000000000000000 3 6 7 7 3 7 7 9 7 7 1 99 0 3 4 7 7 3 7 7 7 3 7 7 3 7 7 7 77 6 0 111 7 1111 7 33333 8 0 0000000 8 8 000 2222222222 0 99 99 111 33 22222 777 8 00000000000000000000000000 3 00 22 0 4 0000000000000000000000 2 0 4 00000000000000000 8888888 7 2222 2 4 77 1111111111111 7 1111111 9 6666666666 7 2222222 5 7 7777 0 7 777777 2 0 222222222 9 11 7 00 0 999 0 0 55 7 8888888888888888888888888888888888888888888888 6 777777 222222222 6 55555555555555555555555 444 0 77777777777777777 999999999999999999 3 3 7777777777777777777777777777777777777777777777 66 7 0 4 888 4 22222222222222 0 66 4 11111 4 888 222 4 66 11 1 3333333333333333333333333 7 7 22222222222222222222222222222222222222 3 3 7
consensus : CACCCAGAATCC-TACAGAC-CCAGGCTT--GGGATTTT-TTTTCCCGGACATCCCGGAGTCACAAGATGT--AACGGGA-CTGG-AACTGGGCCTCTACAA------CACT-C-AGAATGCATCG-------GAGNCCT-CCGGCCATGAACAA-AGAAGATTTTGCGAT-CATTTC---CACC-ACGCTAG-ACGGGATCGTTAACCGCATTAATGTGCTGAGTGACGAGATTGGAAATCATACCACAATCCTACTGAAGAAGCTGGAAGAGCTGACGGNNAAAAA-------CCCCAGGAA-GGAATA-CGCTCCAGATTACGCTACTAACCCGTGCTACACTTGT---G-GAGAAACAGGACATTGGTCGCCG----G-ATTGCCCACAGAA-AA------------CAGATTCCC----------------------CGCAGACCAGTAAGAAAT-CC-GG-T-GTC-AGATTCCCAG----------C-----AGACCAGCAAGAAAACCA-AACAAAAGGATCC-TTGCTACAA-GTGCGGAAAACTAGGACACTGGATCA-GTGACTGTCCGGAA--GAACAAGCNGAGATAGATGCGATGATTCC-CCCCGTACCTGGCTCAAAACCGCCCGTGAAGAGAGAGTACAAACCGTTAGAGATGTGGAACCCGC-CCGCACCTAAACAAACCACTGAAGAAC-CGCCG-AAAAAGAAGANGAAACTNAGC-CGAAAGTAA----A-A-----CTGGACTGTGC-TT----G-TGAACTGTTTNTA---TGCTTA-----C----TGAA-CTGTT--TNAAAACTGT-TTTAA-AAAC--TG---TGCATTG--TNC--------------T-----GTGCTTTAATAAACATGTAAACTT--AAACCCTGNGCTATTCTTT-ACC--AATC-TTG-GATTTTATGCACTGGATTT----------TATACCTTGGATTT--A-GCGAT-ACACAGG----AATACACAGGATTTTATGC-ACTGGATTTTATNCCTTGGAT----CGATA-CACATTCC-------TAAAAGTGCTACATTT------TTT-TTGACGTCA-TAATGC------ACTTCTCCAAGT-C-CAGCCGANTGACGTCACAA-TAGCCAGT-AGCTCGCGCTC----C----TGTGCTA-A--AACC-CG-CACTCT-AAAC-TA--GGCCA-ACGGCA-----ATAC----GC-----T-----CT-A-------GGCCG-GC------CTCTAAA-----CC-GG----GC------T-A--------TAA---ACCCGGCC------G---T------GCTA-----T--A---A-----A-CC-GG--------CC---------------CGG---------C--------GACCCCTGCTGGGGTC-AAACCGCTTGA-CC---AATCAGCA--------------TTGA-CCTCATTTG-CA-TAAAAA-----GTGCACTC-AG---TTG---AAC-CGCCC--ATGGA------GG--------C--------GC-TTG-ACC--------------------ACTCCG---TTGA-CCC-GCCAATCAGCGTCCTAGATATTGAACTCCCCAT-GGAGGCCGGTTATACTACT
Reference ( family-1393 ) : CACCCAGAATCC-TACAGAC-CCAGGCTT--GGGATTTT-TTTTCCCGGACATCCCGGAGTCACAAGATGT--AACGGGA-CTGG-AACTGGGCCTCTACAA------CACT-C-AGAATG------------GAGACCT-CCGGCCATGAACAA-AGAAGATTTTGCGAT-CATTTC---CACC-ACGCTAG-ACGGGATCGTTAACCGCATTAATGTGCTGAGTGACGAGATTGGAAATCATACCACAATCCTACTGAAGAAGCTGGAAGAGCTGACGGNNAAAAA-------CCCCAGGAA-GGAATA-CGCTCCAGATTACGCTACTAACCCGTGCTACACTTGT---G-GAGAAACAGGACATTGGTCGCCG----G-ATTGCCCACAGAA-AA------------CAGATTCCC----------------------CGCAGACCAGTAAGAAAT-CC-GG-T-GTC-AGATTCCCAG----------C-----AGACCAGCAAGAAAACCA-AACAAAAGGATCC-TTGCTACAA-GTGCGGAAAACTAGGACACTGGATCA-GTGACTGTCCGGAA--GAACAAGCNGAGATAGATGCGATGATTCC-CCCCGTACCTGGCTCAAAACCGCCCGTGAAGAGAGAGTACAAACCGTTAGAGATGTGGAACCCGC-CCGCACCTAAACAAACCACTGAAGAAC-CGCCG-AAAAAGAAGANGAAACTNAGC-CGAAAGTAA----A-A-----CTGGACTGTGC-TT----G-TGAACTGTTTNTA---TGCTTA-----C----TGAA-CTGTT--TNAAAACTGT-TTTAA-AAAC--TG---TGCATTG--TNC--------------T-----NTGCTTTAATAAACATGTAAACTT--AAACCCTGNGCTATTCTT--ACC--A--C-TTG-GATTT-ATGCACTGGATTT----------TATNCCTTGGATTT--A-GCGAT-ACACAGG----AATACACAGGATTTTATGC-GCTGGATTTTATNCCTTGGAT----CGATA-CACATTCC-------TAAAAGTGCTACATTT------TTT-TTGACGTCA-TAATGC------ACTTCTCCAAGT-C-CAGCCGANTGACGTCACAA-TAGCCAGT-AGCTCGCGCTC----C----TGTGCTA-A--AACC-CG-C-CTCT-AAAC-TA--GGCCA-ACGGCA-----ATAC----GC-----T-----CT-A-------GGCCG-GC------CTCTAAA-----CC-GG----GC------T-A--------TAA---ACCCGGCC------G---T------GCTA-----T--A---A-----A-CC-GG--------CC---------------TGG---------C--------GACCCCTGCTGGGGTC-AAACCGCTTGA-CC---AATCAGCA--------------TTGA-CCTCATTTG-CA-TAAAAA-----GTGCACTC-AG---TTG---AAC-CGCCC--ATGGA------GG--------C--------GC-TTG-ACC--------------------ACTCCG---TTGA-CCC-GCCAATCAGCGTCCTAGATATTGAACTCCCCAT-GGAGGCCGGTTATACTACT
gi|1 : ACCCAGAATAT-GACAGAC-CCAGGCTT--AGGATTTT-TTT-CCCGGACTTCCCGGAGTCACCGAATGT--AACGGGA-CTGG-AACTGGGTCTCTACAA------CACT-C-AGAATGCATTG-------GAAACC--ACAGCCATGAACAA-AGAAGATTTTGCGAA-CATTTC---CACC-ATGCTAG-ACGGGATCGTTAACCGCATTAATGTGCTGAGTGACGAAATTGGAAATCATACCAGAATCCTG-TAAAGAAGCTGGAAGAGCTGACAGCCAAAAA-------ACCCAGGAA-GGAATA-CGTCCCCGATTACGCTACTAACCCGTGCTACACCTGT---G-GAGCAACAGGACATTAATCACCG----G-ATTGCCCACAGAA-AA------------CATATTCCC----------------------CGCAAACCAGTAAGAAAT-CCTGG-TCGTC-AGATTCCCAGAGTAAGAATTCACAGAAGACCAACAAGAAAACTA-AACAAAAGAATCC-TTGCTACAA-GTGCGGAAAACTAGGACACTGGATCA-GTGACTGTCCGGAA--GAACAAGCTGAGATAGCTGCGATGATTCC-TCCAGTACCTGGCTCAAAACCGCCCGTGAAGAGAGAGTA-ACACCGTTAGAGATGGGGAACCCAC-CCGCACCTAAACAAACCAGTGAAAAAC-CACCG--AAAAGAAGAAGATACTCAGC-AAAAAAT-A----A-A-----CTGGACTGTGC-TTA---G-TGAACTGTTTGTA---TGCTTAGTGAGCACTGTGAA-CTGTT--TAAAAACTGTGCTTAGTGAAA--TG---TGCATTG--TTCTTGTTTCAAATGTTT-----ATGCTTTAATAAACATGTAAACTTAAAAACCTTGTGTTATTATTTCACCCAG--C-TTGTGATTT-AT-TA-TGGATTT----------CA-----TGGATTT--A----AT-ACACAGG----ATTTCATAGGATGTTATGC-ACTGCATGTT---------AT----CGA------ATTTT-------TAACAGTGCAACA-----------T-TTGACGTCA-TAATGC------ACTTCTCCAAGT-CAAAACCGCTTGACGTCACAA-TGGCCAGT-AGCTCGCGCTCCACGC----TGTGCTA-A--AATC-TG-CACTCT-AAAC-TA--GGCTA-AT-ACA-----CTGC----GC-----C-----CTCAACCC---GGCCG-GG------CTC---A-----CA-GG----GC------T-A--------TAA---ACCCGGCC------GGGCTCACAGGGCTA-----T--A---C-----A-CC-GG--------CCGTGCTATTAACCGATCGGGCTAACCGTC--------GACCCTTGCT-GGGTC-AACCCGCTTGA-CC---AATCAGAA--------------TTGA-CATCATTTG-CA-TAAAAA-----TTGCACTC--G---TTGA--AAC-CACCC--ATGGA------GG--------C--------GCGTTATACT--------------------ACT
gi|10 : ggctataaaagcagagtccccgctttcacttttcacatcgacttcagaccttgacctgagaacatggctcagaaacagctataattcgtggacagggctcagaagaaagtggataacatgatacagaaacagacagggcttcagaaagatgtcttgaaagaagaggacagacaagaggtacaggaggcttacattgcacatcagctgaaaaaggcgaagactgaggagtatctacctCCC----------------------CGCAGACCAGTAAGAAAT-CCCGG-TTGTC-AGATTCCCAG----------C-----AGACCAGCAAGAAA-CCA-AAGAAAAGGATCC-TTGCTACAA-GTGCGGAAA-CTAGGACACTGGATCA-GTAACTGTCCGGAA--GAACAAGCCGAGATAGATGCGATGAT-CC-CCCCGTACCTGGCTCAAAACCGCCCATCAAGAGATAGTACAAACCGTTAGAGATGTGGAACCCGC-CCACACCTAAACAACCTACTGAAAAAC-CGCAG-AAAAAGAAGATGAGCTTTAGC-C--AAGTTA----A-A-----
gi|11 : aaatcatccGAA--GAACAAGCTGAGATAGAAGCAATGATGTC-CCCGGTTCC----------CTGC-----AAGAGAGGGTACAAACCTTGAGAGATGTGGAAACCTC-CAGCGCCTAAA-AGACCACTGAAGAAC-CGCAG-AAAAAGAAGAGGAAACTAAGT-AGAAATTAATGTTA-AACT--CTGGAC---GG-TT----A-TAAACTG--TGAA---CTCTTA-----C----AAAAGCTGT------AAACTG---TTAT-AAGC--TG---TGAACTG--TGT--------------TTATGGGTGGTTTAAAAAAAATGAAGATTT--tgcttga
gi|12 : GGAACCATACAAGAATCCTACTCAAGAAGCTGGGAGAGCTGAAGTAGAAAAA-------CCCCATGAATGAAATA----TCCA----------CTAACCTCTGCTGCACTTGT---A----AAACAG--------------------ATTGCCCACAAAA-AA------------C----------------------------------------CAAGAAAA-CCTGG-T-CTCTAAATTCTTCG----------C-----AGAAAACCAAGAAAACTAGAACGAA-GGACCC-TTGCTACAA-GTGCGGTAAACTTGGACATTGGATCA-ACAATTGTCCGGAA--GAACAAGC
gi|13 : A-TAATGCTTTTTCACTTCTCCAAGT-C-CAGCCGAATGACGTCACAA-TAGCCAGT-AGCTCGCGCTT----C----TGTGCTA-A--AACCTTG-CACTCT-AAAC-TA--GGCTA-A----A-----ACAC----TC-----TCAA--CT-A-------GGCCA-GC------CTATAAA-----CC-AG----GG------T-A--------TAC---ACCAGCCC------G---T------GCTC-----T--A---A-----A-CC-GG--------GC---------------TAG------------------GACCCCTGCTGAGGTC-AAACCGCT
gi|14 : actgcttgttatagcatagaggaacattggatgagcaaatT--TCAAACCTGT-GTTCA-A--C--TG---TGC-TTA--AAC--------------T-----CTGCTTTAATA--CAT--AAGCTT--AAACCCTGAGCTATTCTT--ACC--AATC-TTG-GATTTTATGCACTGGAATT----------TATTGCTTGGATTT--A-GCGAT-ACACA
gi|14 : tccGGATTTTATGC-ACTGGAATTTATTGCTTGGATTTAGCGATA-CACATTCCGAGACTTTAAAAGTGCTACATTttccgagactttaaaagtgctacatt
gi|15 : tccttcaaacctgtgttcaactgtgcttaaactctgctttaatacataagcttaaaccctgagctattcttaccaatcttT--TCAAACCTGT-GTTCA-A--C--TG---TGC-TTAAATGC--------------T-----GTGCTT-AATA--CAT--AAGCTT--AAACCCTGAGCTATTCTT--ACC--AATC-TTG-GATTTTATGCACTGGAATT----------TATGCCTTGGATTT--A-GCGAT-ACACA
gi|15 : ccGGATTTTATGC-ACTGGAATTTATGCCTTGGATTTAGCGATA-CACATTCCGAGACTTTAAAAGTGCTACATTttccgagactttaaaagtgctacatt
gi|17 : ccttcaaacctgtgttcaactgtgcttaaatgctgtgcttaatacataagcttaaaccctgagctattcttaccaatcttCCAACC------G---C------ACTA-----T--GTTGA-----A-CC-AG--------CCA--------------T-----------C--------TACCCCACCT---------ACC-CTCGA-CC---AATCAGAA--------------ATGA-CCTCAC--------AAAAA-----GTGCACTT-AG---TTA---AAC-CAGCC--ATAGA------GG--------C--------AC-CT
gi|18 : acctCACTTT-CACTCAAAA-----GTGCACTC-AG---TTG----AC-CTCCC--ATTGG------GG--------tatacta
gi|2 : CACTCAGAATCC-TACA-AC-CCAGGCTT--GGG-TTTT-TTTTCCCGGAGATTC-AGAGGCACAAGATGT--CACGGGA-CTGG-AACTGGGCCTCT-CAA------CCCT-CCAGAATG-------------AGCCCTTCCGGCCA--GACAA--GAAGACTTTGCGATTCATTAC---CACCGACATAAG-ACGGGATTGTTA--CGCATTAATGTGCTGCGTAATGAGATTGGAAATCATACCACCGTCCTGCTGAAGAAGCTGGAAGACCTGACGGGGAAAAATCTAGATCCCTAGGAA-GAACTATCACTCCAGATTCGGCTA-TAACCCGTGCTCAACTTGTTGCGTGTGAAACAGGGCATTGGTCGCCG----GTATTGCCCCCAGAATAG------------CAGATTTCCCGCAACCAGTAAGAAAGATTTTCGCAGAC-AGTAAGAAAT-C-------GCC--GATAACCAG----------------AGA-----AAGAAAAC-A-AACAACGGGATCCCTTGC-ACAAAGTGCGGGAAATT-GGACACTGGATCAAGTGACTGTCCGGAAAAGAA-AAGCGGAG-TCGATGAGATGATTGGGCCCCGTAACTGGCTCAAAACC-CGCTTGAAGAGAGAGTACAAACCGCTAGAGA-GT----CCCCT-CCGCACT----------ACTGAAGAAC--GCCTTAAAAAGAAGA-GCAACTGAGCACGAA-GTAA----A-AAAAACTTGAACTGTTT-TTTTATGCTGAACTGTTT-TACATTGATAA-----C----TGAA-CTGTT--TTTATGCTGT-TTAAT-AAAC--TGGTTTGAGTTG--T-----------------------TGCTTTAATAAACATGTAAACTT--AAAACCTGGTGTAGTCTTT-ATT--A--TGCTG-AGCGA-ATACAC-AGATTTAAACAAGGAATAGAC--TGGATTTTTATGCGATGATACAGG----AATACACAGGA------AC-ACTGGATTTTATGC----GAT----CGATAACACATTCC-------TAAGTGTGATACATTT------AT----GACGTCAATAATGT--------CTCTCAAGGT-C-----CGATT--TTTCAGAAATAGC-ATTCAGC-----CTT----T----TTCACGA-ATCAA----G-C------GAAG-TA--GATCC-ACGGCA-----ATATA---GCCAACTT-----AT-A-------TAACC-GC------CTCTAAA-----CC-AGCCGTGC------T-A--------TAA---TACCG---------G---T------ACTC-----T--A---A-----A-CC-GG---------C---------------TAG------------------GACCCCTGCTGGGGTC-AAAC----TGA-CC---g
gi|2 : ttttcacattttacacctgcaaccagagaacatggctctagatgaacaggctagaattcgtggacagagtcagaagaagtgaataacatggtacgaaaaagacgggaatgcaacaggagatttcttggcgaagcaaacagttagacagggtacatgagcttacattggcacagcagctgataaaaggcaaggactgaggatttctaatacgctC-CG-C-CTCT-AAAC-CA--G-CCGTGCTATA-----ATACCGGTAC-----T-----CT-A-------AACCG-GCTAGGACCCCTG-------CT-GG----GG------T-C--------AAACTGACCCGTCT------A---T------GCTA-----TTTG---A-----A-CC-G---------CC---------------CAT---------C--------GAGCCCTG---------AAAACGCTTGAACCTCAAGTCAGCAAGAACCGCATCTGCTTGA-CCTCATTTGTCA-TAAAAACAACGGTGCACTCAAG---TTGTGAAAC-CTCCCCTATGGA------GG--------cgtctatgctatttgaaccgcccatcgagccctgaaaacgcttgaacctcaagtcagcaagaaccgcatctgcttgacctcatttgtcataaaaacaacggtgcactcaagttgtgaaacctcccctatggagggcggaggctactaa
gi|3 : ttttcacattttacacctgcaaccagagaacatggctctagatgaacaggctagaattcgtggacagagtcagaagaagtgaataacatggtacgaaaaagacgggaatgcaacaggagatttcttggcgaagcaaacagttagacagggtacatgagcttacattggcacagcagctgataaaaggcaaggactgaggatttctaatacgctcactcagaatcctacaacccaggcttgggttttttttcccggagattcagaggcacaagatgtcacgggactggaactgggcctctcaaccctccagaatgagcccttccggccagacaagaagactttgcgattcattaccaccgacataagacgggattgttacgcattaatgtgctgcgtaatgagattggaaatcataccaccgtcctgctgaagaagctggaagacctgacggggaaaaatctagatccctaggaagaactatcactccagattcggctataacccgtgctcaacttgttgcgtgtgaaacagggcattggtcgccggtattgcccccagaatagcagatttcccgcaaccagtaagaaagattttcgcagacagtaagaaatcgccgataaccagagaaagaaaacaaacaacgggatcccttgcacaaagtgcgggaaattggacactggatcaagtgactgtccggaaaagaaaagcggagtcgatgagatgattgggccccgtaactggctcaaaacccgcttgaagagagagtacaaaccgctagagagtcccctccgcactactgaagaacgccttaaaaagaagagcaactgagcacgaagtaaaaaaaacttgaactgtttttttatgctgaactgttttacattgataactgaactgtttttatgctgtttaataaactggtttgagttgttgctttaataaacatgtaaacttaaaacctggtgtagtctttattatgctgagcgaatacacagatttaaacaaggaatagactggatttttatgcgatgatacaggaatacacaggaacactggattttatgcgatcgataacacattcctaagtgtgatacatttatgacgtcaataatgtctctcaaggtccgatttttcagaaatagcattcagcctttttcacgaatcaagcgaagtagatccacggcaatatagccaacttatataaCACTCAGAATCC-TACAGAC-CCAGGCTT--GGGATGTT-TTCCCCCGGAGATTCCAGAGTCACAAGATGT--AACAGGG-CTGG-AACTGGGGCTCTACAA------CCCT-C-AGAATG------------AA--CCT-CCGAACCTGAACAA-AGAAGATTTTGCGAT-CATTAC---CACG-ACACTAG-ACGGGATCGTTAACCGCATTAATGTGCTGAGTAATGAGATTGGAAATCATACCACAGTCCTACTGAAGAAGCTGGAAGAGCTGACGGGTAAAAA-------GCCTAGGAA-GGAATA-CACCTCAGATTACGCTACTAAACCGTGTTACACTTGT---G-GACAAACAGGACATTATTCGCCG----G-ATTGCCCACAGAA-AA------------CAGATTATC----------------------CGCAGACCAGTAAGAAAT-------T-GGC-AGATTCCCAC----------C-----AGACTAGCAAGAAAACCA-AACAAAGGGATCC-TTGCTACAA-GTGCGGAAAATTAGGACACTGGATCA-GTGAACGTCCTGAA--GAACAAGCGGAGATAGCCGAGATGATTGG-TCCCGTACCTGGCTCAAAACCCACTGTGAAGAGAGAGTACAAACCGTTAGAGATGTGGAATCCGC-CCGTACCTAAACAAACCAGTGAAGAAC-TACCG--AAAAGAAGAAGAAACTTAGC-CGAAAGTAA----ATA-----CGGGACTGTGC-T-------TGAACTGTTTTTA---TGCTTA-----T----TCAA-CTATT--TAAAAACTGT-TTTAA-AAACATTG---TGCATTG--TTC--------------T-----ATGCTTTAATAAACATGTAAACTT--AAACCTTGTGTTATTCTT----T--A-----------TT-ATGCACAGGATTT----------CATACACAGGATTT--A----AT-ACACAGG----AATACATAGGATTTTA-----CTGGATTTTATCCCTTGGAT----CGATA-CACATTCC-------TAAGTGTGCTACATTT------TTT-TTGACGTCA-TAATGC---------TCTCCAAGTCC-CAACCGAATGACGTCATAA-TAA--A----------GCTC----C----TGTGCTA-A--AA------C-CTCT-AAAC-TA--GGCCA-GCGGCA-----ATAC----AC-----T-----CT-A-------GGCCG-AC------CTATAAA-----CC-GG----GC------T-G--------TAA---ACCCGGCC------A---T------GCTA-----T--A---A-----A-CA-GG--------CC---------------TAG------------------GACCCCTGCTGGGGTC-AAATCGCTTGA-CC---AATCAGCA--------------TTGA-CCTCATTTG-CA-TAAAAA-----GTGCACTC-AG---TTG---ACC-TCCCT--ATGGA------GG--------C--------GC-TTG-ACC--------------------ACTCCG---TTGACCCC-GCCAATCAGCGTCCTAGATATTGAACTCCCTAT-CGAAGCGGGTTATACTACTgcggaggctactaa
gi|4 : GGCTT--GGGATTAT-TTT-CCCGAACATCCCGGAGTCACAAGATGT--AACGGGA-CTGG-AACTGGGCCTCTACAA------CACT-C-AGAATGTATCG-------GAGACC--CCGGTCATGAACAA-AGAAGATTTTGCGAT-CATTTC---CACT-ACACTAG-ACGGGATCGTTAACCGCATTAATGTGCTGAGTGACGAAATTGGAAATCATACCACAATCCTACTGAAGAAGCTGGAAGAGCTGACGCCTAAAAA-------CCCCAGGAA-GGAATA-CGTTCCCAATTACGCTACTAACCCGTGCTACACTTGT---G-GAGAAACAGGACATTGGTCGCCG----G-ATTGCCCACAGAA-AA------------CAGATTTCC----------------------CGCAGACCAGTAAGAAAT-C---------C-AGAT----------------------AAAACA-----AAAACCA-AACAAAAGGATCC-TTGCTACAA-GTGCGGAAAATTAGGACACTGGATCA-GTGACTGTCCAAAA--GAACAAGCGGAGATAGCTGCGATGATTCC-TCCAGTACCTGACTCAAAACCCCCTGTGA--AGAGAGTACAAACAGTTAGAGATGTGGAATCCGC-CCGCACCTAAACAAACCACTGAAGAAC-CACCG-AAAAAGAA---GAAACTCAGC-AAAAAGT-A----A-A-----CTGGACTGTGCTTT----G-TGAACTGTTTTTA---TGCTTA-----C----TGAA-CTGTTACTGTGAACTG--TTTAA-Aac
gi|5 : GGGTTTTATGC-AGCGGATTTTATGCCTTGGAT----CGATA-CACATTCC-------TACACGTACTACATTT------TTT-TTTACGTCA-TAATGC------ACTTCTCCAAGG-C-TAGCCGAATGACGTCACAA-TAG------AGCTCGCGCTC----C----TGTGCTA-A--AACC-TG-CACTCT-AAAC-TA--GGCCA-ACGGCAATTTGATAC----AC-----TCTCAACT-A-------GGCCATACG-----CTCTAAACCCGGCC-GG----GC------TCACCGGCCTCTAA---ACTCGGCC------A---T------GCTA-----T--A---ATCCCGA-CC-GGGCTATAAACC---------------CGG---------CCGGACTAGGACCCCTGCTGTGGTC-AAACCTCTTGA-CC---AATCAGCA--------------TTGA-CCTCATTTG-CA-TAAAAA-----GTGCACTC-AG---TTG---AACTCG-CT--ATGGAAACCGGGG--------CCAGGTCAAGC-TTG-ACCCCCACTGCGCATGTGCGATGACCCCGCCATTGA-CCCAGCCAATCAGCGTCCTAGATATTGAACTCGCCAT-GGAGGCCGGTTATACTACT
gi|6 : CCAGAATCCTTACAGACTCCAGGCTTCATGGATTTTATTTTTCCTGACA---------CACAGGATGGCAAACCGGATCTGGAAACTAGGTCTCTATAATCTCCTCACTAC-AGAATGCATCGCGAACTAGAGCCCT-C---CCACTGACAAGATAACATTTC-CGCT--ATTTCACATACC-ACTCTAGAACAAGATAGTAAACAAGATTAATGGACTGGTCGAGGATATTGGTAAtccgt
gi|7 : gctataaaaatcaggccagatgtcctacacttcaatccgacttcagacagtgagcagacaacataggcacagaaacgggctagattttgtgcgacagaagttcagaagaaagtcaatagatagtacacacttcagtatcagttgggtcccagaaatatttacttgagtgaaagaggacagatatgagccttacatgctggcacatccagctaaaaaaggcgcaggaacaagccaatggttatatagGAAAAAGATGGAAGAGCTGACAGCGAAAAA--------------------------CTCCAGA-TACGCCACT-ACCCGAGCTACACTTGT---G-GAGAAATAGGCCATT-GTCACCGGATTG-ATTGCCTGCAGAA-AACTAAGAAAACCTCAGATTCCC----------------------CGCAGACCAGTAAGAAATCCC-GGTT-GTC-AGATTCCCAG----------C-----AGACCAGCAAGAAAACCA-AAGAAAA--ATCC-TTGCTACAA-GTGCGG-AAACTAGGACACTGGATCA-GTAAC-GTCCGGAA--GAACAAGCCGAGATAGATGCGATGA-TCC-CCCCGTACCTGGCTCAAAACCGCCCATCAAGAGATAGTACAAACCGTTAGAGATGTGGAA-CCGCGCCACACCTAAACAACCTACTGAA-AACACGCAG-AAAAAAAAGATGAAGCTTAGC-CGAAAGTAA----A-
gi|8 : GGATTT-----C-AT-GCAC-GGTTTTAATAC-CAGGATTTTATACCGTTGGATTTTAGT-------------GATA-CACATTCC-------TAAAAGTGCTA-ATTTAAGGAATTTGTTGACGTCA--AATACTTTTC-ACTTCTC---GT-C-CA-CCGCTTGATG-CACAA-TAGCCAGT-AGCTCGTGCTC----CAAACTGTGCTA-A--AACC-TG-C-CACTCAAAC-TA--GGCTA-A-ATCA-----ATGC----AC-----T----------------------GCG-----CTCTCAA-----CT-AG----GCAGCC--T-A--------TAA----CCCGG-------------------GCTA-----T--A---A-----A-CC-GG--------GC---------------TGG---------C--------GA-CCCTGCTGGGATCAAAACAGCTTGA-C-----ACCTAC---------------TTGACCCCCACTGA-CA-TG---------------TC-CG---ATG---A---CG-CC--AT-------------------C--------A--TTG-ACC--------------------A-----------------GCAAACCAGCGTCCTAGATATTGAAA-CCCCATCGGAGG-CGTTTATACTACTtgc
gi|9 : gtaCTC----C----TGTGCTA-A--AACC-TG-CACTCT-AAAC-TATAGGCCA-A-GTCA-----AAAC----AC-----TGCG--CT-ATCAACCCGGCCG-GG------CTC---A-----CC-GG----GT------T-A--------TAA---ACCCGGCCTCACCAG----------GCTA-----T--A---A-----ATCC-GG--------TC---------------TAG---------ca
gi|9 : CCG-GC------CTC---A-----CC-AG----GC------T-A--------TAA---ATCCGGTC------T---A------GATA-----T--A---A-----A-CCAGG--------CC---------------GGG---------C--------TAGCCCAGCatataaaccaggccgggctagcccagcctctaaacccggctgtgctataaacccggccgggctagcccggcgacccctactggggtcaaactgcgcactccgttgaccccaagcgtcctagatattgaaccggccatggaggcccgaaaccgcttgaccaatcagaagtctccctgctttaccttatttgcataaaaagtgcactcagttgaaccgcctatgtattggcgttatacca
gi|9 : ctcctgtgctaaaacctgcactctaaactataggccaagtcaaaacactgcgctatcaacccggccgggctcaccgggttataaacGCTATA--AATC-CG-G--TCT-AGATATA--AACCA---GGC---------C----GG-----G-----CT-A-------GCCCA-GC------CTCTAAA-----CCCGGCTGTGC------T-A--------TAA---ACCCGGCC------G---G------GCTA------------------------G--------CC---------------CGG---------C--------GACCCCTACTGGGGTC-AAACTGC--G---C---ACTC--CG--------------TTGA-CCCC-------------AA-----GCGTCCT--AGATATTG---AAC-CGGCC--ATGGA------GGCCCGAAACC--------GC-TTG-ACC--------------------AATCctctaaacccggctgtgctataaacccggccgggctagcccggcgacccctactggggtcaaactgcgcactccgttgaccccaagcgtcctagatattgaaccggccatggaggcccgaaaccgcttgaccaatcagaagtctccctgctttaccttatttgcataaaaagtgcactcagttgaaccgcctatgtattggcgttatacca
gi|9 : ctcctgtgctaaaacctgcactctaaactataggccaagtcaaaacactgcgctatcaacccggccgggctcaccgggttataaacccggcctcaccag----C----TGTGCTATA--AACC-CGGC-C----GGGC-TA--GCCCG-GCGAC---------------C-----C-----CT-A---------CTG-GG------GTC-AAA-----CT-GC----GCACTCCGT----------TGA---CCCCAAGC------G---T------CCTAGATATT--G---A-----A-CC-GG--------CCA--------------TGG---------A--------GGCCC--------G---AAACCGCTTGA-CC---AATCAGAAGTCTCCCTGC----TTTA-CCTTATTTG-CA-TAAAAA-----GTGCACTC-AG---TTG---AAC-CGCCT--ATGTATT----GG--------C--------GT-TAT-ACC--------------------Aagaagtctccctgctttaccttatttgcataaaaagtgcactcagttgaaccgcctatgtattggcgttatacca
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|16 ): GATGAAAAATGGAATAAGACAAGTGGGAAGAAGAAGACAGGGAAAAGGGGACGAATGCAACGAGATGTTCTTGAGCGCAATGATAGACAGGAAGGTACAGGAGGCTTACATGGCACAGGCAGCTGAAAAAGGGCAAGAC