lowQualScore : 1111111111111111111111111111111
lowQualScore : 55 22 22 1 44444444 5555555555555555555555555555555 1 4444444444444444444 111 11 11111 1111111 111 11 5555555 111 1 1 1111 1 1 111111 5555555555555555555555555555555555 11111 222222222 1 1 1 33 777
lowQualScore : 55 6 33 66 5 6 77777777 4 6 4444444444444444444444444444444 0 8888888888888888888 444 11 3 3 0 55555 7 4444444 222 44 8 1 4444444 555 6 9 7 8 5 1 5555 5 2 2 0 88 5 6 0 1 6 999999 77 4444444444444444444444444444444444 1 99 5 5 888 0 00000 333333333 7 5 5 0 0 00 6 000
lowQualScore : .. . .. .. . . ........ . . ............................... . ................... ... .. . . . ..... . ....... ... .. . . ....... ... . . . . . . .... . . . . .. . . . . . ...... .. .................................. . .. . . ... . ..... ......... . . . . . .. . ...
lowQualScore : 00 0 00 00 0 0 55555555 0 0 0000000000000000000000000000000 2 6666666666666666666 000 22 9 0 4 11111 2 6666666 999 00 6 4 1111111 777 6 0 0 0 0 0 6666 6 4 0 2 44 0 0 9 0 7 222222 99 8888888888888888888888888888888888 8 22 7 0 000 1 44444 555555555 1 7 0 5 5 55 0 000
consensus : ACAAACAATACGCATATACAATTTCTTTATCTTTTTTCTCATCACAATATTATACGTANTANTTAGTGTNACCTTGATTCATTTGTAGATTTGACCAGATTCATCTGGTAGAACCAGNTTTCGTGACG-----------TCA-----CGT---CATGGTGGTCAGGCCTTCGAGGG----AATGTACAAAATATCGTAAAA------GTATGTCCGTT-GTTGGATTATTACGAGT-A--GACTTTA---GACTTCTGAAGCGACGGATGAGAAGGAAAA-TCATTTCTGAGCTTAACCGTGCCGGTGAANAGGTTTGTTTCGGCGAATTTGATAATAAAATCGGGCCCGAATCG-AGGAGGGGG-TCAGAATGTCGTTGCACACCTGGTGT-AT------TTAT--A-------------------TA-GAT--AT-T---TTNTTT--TTC-TT-TC--TTCTATTT--ATAT------C--TATTTATTGATTAAAATTCA-GATACCTGTGGNCANACA-TAAAG---CATAAA
Reference ( gi|1 ) : ACAAA--ATATGCATATACAATTATTTTATTTTTTTTCTCATAACAACATTATATGTAATAA--AGTGTAACCTTAATTTATTTGTAAATTTAATTA-AT-----------------ATTTCTTGACG-----------TCT-----TGT---CATGGCAGTCAGGTCTTCGAGGG----AATGTTCAAAATATCGTAAAA------GTATGCCTGTT-TTTGGATTGTTACGAGTGATAGACTTTA---GACTTCTGAAGAGACGGTTGAGAAGGAAAA-TCATTTCTTAGCTTAACTGTGCCAATAAATAGGTTTGTTTTGGCAAATTTGATAATAAAACCGGGCCTGAATCA-AGGAGGGGG-TCAGAATGTCGTTGCACGCTTGGTGT-AT------TTAT--A-------------------TA-GAT--ATAT---TTTTTT--TTC-TT-TC--TTCTATCT--ATAT------T--TATTTGTTGATTAAAATTCA-GATACCTCTGGGTAGATAATGAAGTCTCATAAAAAGTGTTCCATTTCGGGACTCGATTTTTGTTTGGTCAGCAGAAATGTAAAAAATAAAA
gi|2 : ACAAACAATACGCATATACAATTTCTTTA--TTTTTTCTCATCACAATATTATATGTACT-T--AGTGTTACTTTGATTTATTTGTAG----AACCAGAT-----------------TTTTTTTGGCGCGGAGATGTAATCTCATGATGTCAACATAGTTGTCAGGCCTTCGAGCGAATTAATGTTCAAAATATCATAAAA------A---G----------GGACT-T---------TAGATTTCG---GA-------AGCGACAGATGAGAAGGAGAA-CCATTTCTGAGCTTAACTGTGCTGGAGAATAGGTTTGTTTTGGCGACTTTAATAAGAAAATCAGACCCAAATCA-AGGAAGGGG-TCCAAATGTTGTTCCACACCTGGTCT-AT------TTAT--A-------------------TATCATGGATAT---TTCTATGATAT-AT-TT--TTCTATTT--ATAT------C--TATTTATTGATTAAAATTTA-GATATCT
gi|3 : TCTTTTTTCTCATCACAATATTATACA-AATAATTAGTGTAACCTTGATTCATTTGTAGATTTGATTA-ATTCATCTGGTAGAACCAGATTTTGTGATG-----------TCC-----CAT---CATGGTGGTCAGGTCTTTGAGG-----AATGTTCAAAATATCATAAAA------GTATTTCCATT-GTTGGATTATTACAAGTAA----CTTTA---GACTTCTGAAGCGACGGATGAGAAGGAAAA-TTATTTTTGAGCCTAACTGT-CCGGTGAAAAGATTAGTTTTGGCAAATTAGATGATAAAATCAGGCCCGAATCG-AGGAAGGGG-TCAGAATGTCGTTGCACACCTGgt
gi|5 : ttTTTTGTGACG-----------TCA-----CGT---CATGGTAACCAGGCCTTCGTTGA----ATTTTTCAAAATATCGTACAA------GTATGTCTGTT-TTCAGATTGTTGC-AG----AAACTTTA---AATTTCGGATGAAACATATGAGATTGATAA-TCATCTCTGAGTTTAACCATGCCAGAGAAGAGG-----------------GA-AATCAGACCAGATA-GAATCG-CGGAGGGGG-T-AGAAtt
gi|9 : TTTCGTGACG-----------TCA-----TGT---AATGGTGGTCAGGCCTTGGAGG------ATGTAC-AAATATCGTAAAA------TTATGTC-GTT-GTTAGATTATTAAGAGT----GCCTTTA---GAATTCTGAatctggtctttttatat
gi|8 : tTTTCGTGACG-----------TCA-----TGT---AATGGTGGTCAG-CCTTGGAAGG----AATGTACAAA-TATCGTAAAA------TTATGTCCGTTGTTTAGATTATTAAGAGT----GCCTTTAG--GAATTCTGAA
gi|11 : tTCAGGCCTTCGAAGG----AATGTACAAAATATCGTAAAA------GTATGTCCGTT-GTTGGGTTATTCCGAGT----GACTTTA---GACTTCTGAAG
gi|18 : GGCCTTGGAAGG----AATGTACAAAATATCATAGAA------ATATGTCCGTT-GTTGcg
gi|17 : GG----AATGTACAATATATCGTAAAAGTACATGTATGTCCGTT-GTTAGATTAATACGAGTGA
gi|4 : aTTACGAGTGA----CTTTAAAAGACTTCTGAAGCGACGGATGAGAAGGAAAAATCATTTCTGAGCTTAACCGTGCCGGTGAATAGGTTTGTTTAGGCGAATTTGATGATAAAATCAGACCCGAATCG-AGGAGGGGG-TCAGAATGTCGTTGCACACCTGGTGT-AT------TTAT--ACATGCATGTATTATATGGGTA-GAT--AT-T---TTGTTT--TTA-TTATT--TTCTATTT--AT
gi|6 : TGAGAAGAAAAA-TCATTATTGAGGTTAACCGTGCCGGTGAAAAGGTTTGTTTCGGCACATTTGATAATAAAATCGGGTCCGAATCG-AGGAGGGGG-TCAGAATGTCGTTGCACACCTGGTGT-GTTGTATATTAT--A-------------------TA-GAT--ATA------TTTT--TTC-TT-TT--TCCTAT-T--ATAT------C--TATTTATCGATTAAAATTCA-GATACCTGTGG
gi|13 : CATTTCTGAGCTTAATCTTGTCGGGGAATAGATATATTTTGGCAAATTTAATAGGAGTTCTGAACCCGAATCA-t
gi|7 : TGGCAGTGAAAAGGTTTGTTTCGACAAATTTGATAATAAAATCGGGTCCGAATCGGAGGAAAGGG-TCAGAATGTCGTTGCACACCTG-TGTTAT------TAATTTA-------------------TA-GAT--AT-TGGGTTATTT--TTC-T------------------AT------T--TAT-----GATTAAAATTCAGGATACCTGTGG
gi|10 : cTGATAAAATCGGGCCCGAATCC-AGGAGGGGG-TCAGAATATCGTTGCACACCTGATG-----------TAG--A-------------------GA-GAT--A-------TTTTG--TTCATT-TC--TTCTATTT--ATAT------C--TATTTATtt
gi|20 : GGAGGGAAATCAAAATGTCGTTGCACAC-CGGTGT-AT------TTAT--A-------------------
gi|12 : gT--A-------------------TA-GAT-----T---TCTTTT--TTC-TT-TC--TTTT--CT---TGT------TCCTATTTATTGATTAAAATTCA-GATACCTGTGGCCAAAC--TAAAG---CATAAA
gi|15 : -TT-TCATTTCTATTT--ATAT------C--TATTTATTGATTAAAATCCA-GGTACTTGTGCATATATA
gi|16 : aatataT-TT--TTCTATTTTAATATGGAGTCC--TATTTATTGATTAAAGTTCA-GATACTTGTGtaca
gi|19 : TAT------C--TATTCATTGATTAAAATTCA-GATACCTGTGGatataa
1 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|14 ): AGGCAAAGCAAAAAGTATTGTTTGTTAAAATTTATATCCATTTGCCACACTAAAATAAAAGAAATAAAA
Alignments
lowQualScore : 11 1 222 88888888888888888888888888888 111111 22222 111 111111111 3333333333333333333 11111 11111 111111 222 333
lowQualScore : 88 4 2 0 7 1 888 1 0 9999 77777777777777777777777777777 33 1 2 4 222222 4 77777 333 0 6 0 1 4 0 4 4 4 5 555555555 4444444444444444444 44444 00000 777 1 55 4 4 66 66 222222 5 5 1 111 555
lowQualScore : .. . . . . . ... . . .... ............................. .. . . . ...... . ..... ... . . . . . . . . . . ......... ................... ..... ..... ... . .. . . .. .. ...... . . . ... ...
lowQualScore : 00 0 0 7 3 0 333 0 7 0000 77777777777777777777777777777 22 4 9 6 888888 4 00000 888 2 7 5 0 2 1 4 4 4 0 222222222 4444444444444444444 33333 44444 000 7 77 4 4 11 11 888888 0 7 0 333 000
consensus : ACAAACAATACGCATATACAATTNCTTTATCTTTTTTCTCATCACAATATTATACGTAATAA-TAGTGTAACCTTGATTTATTTGTAGATTTGACCA-ATTNATCT-GGC----AGA--CA-ATTTCGTGACGTCACGTCATGGTGGTCAGGCCTTCGAGGGAATGTACAAAATATCGTAAAAGTA------TGTCCGTTG-TTGGATTATTACGAGT---AGACTTTA---GACTTCTGAAGCGACGGATGAGAAGGAAAA-TCATTTCTGAGCTTAACCGTGCCGGTGAANAGGTTTGTTTCGGCGAATTTGATAATAAAATC-GGGCCCGAATC-GAGGAGGGGG-TCAGAATGTCGTTGCACACCTGGTG-TAT------T--TATA-------------------TA-----GATAT-T---TTNTTTTTC-T-T-TC--TTCTATTT--ATAT------CTATTTATTGATTAAAATTCA-GATACCTGTGG-CANAT-ATAAAGTCTCATAAA
Reference ( family-123 ) : ACAAACAATACGCATATACAATTTCTTTATCTTTTTTCTCATCACAATATTATACGTANTANTTAGTGTNACCTTGATTCATTTGTAGATTTGACCAGATTCATCT-GGT----AGAACCAGNTTTCGTGACGTCACGTCATGGTGGTCAGGCCTTCGAGGGAATGTACAAAATATCGTAAAAGTA------TGTCCGTTG-TTGGATTATTACGAGT---AGACTTTA---GACTTCTGAAGCGACGGATGAGAAGGAAAA-TCATTTCTGAGCTTAACCGTGCCGGTGAANAGGTTTGTTTCGGCGAATTTGATAATAAAATC-GGGCCCGAATC-GAGGAGGGGG-TCAGAATGTCGTTGCACACCTGGTG-TAT------T--TATA-------------------TA-----GATAT-T---TTNTTTTTC-T-T-TC--TTCTATTT--ATAT------CTATTTATTGATTAAAATTCA-GATACCTGTGGNCANAC-ATAAAG---CATAAA
gi|1 : ACAAA--ATATGCATATACAATTATTTTATTTTTTTTCTCATAACAACATTATATGTAATAA--AGTGTAACCTTAATTTATTTGTAAATTTAA-----TTAAT------------------ATTTCTTGACGTCTTGTCATGGCAGTCAGGTCTTCGAGGGAATGTTCAAAATATCGTAAAAGTA------TGCCTGTTT-TTGGATTGTTACGAGTGATAGACTTTA---GACTTCTGAAGAGACGGTTGAGAAGGAAAA-TCATTTCTTAGCTTAACTGTGCCAATAAATAGGTTTGTTTTGGCAAATTTGATAATAAAACC-GGGCCTGAATC-AAGGAGGGGG-TCAGAATGTCGTTGCACGCTTGGTG-TAT------T--TATA-------------------TA-----GATATAT---TTTTTTTTC-T-T-TC--TTCTATCT--ATAT------TTATTTGTTGATTAAAATTCA-GATACCTCTGGGTAGATAATGAAGTCTCATAAA
gi|10 : TGATAAAATC-GGGCCCGAATC-CAGGAGGGGG-TCAGAATATCGTTGCACACCTGATG-------------TAGA-------------------GA-----GATAT-T---TTG---TTCAT-T-TC--TTCTATTT--ATAT------CTATTTATaagtgttccatttcgggactcgatttttgtttggtcagcagaaatgtaaaaaataaaa
gi|11 : TCAGGCCTTCGAAGGAATGTACAAAATATCGTAAAAGTA------TGTCCGTTG-TTGGGTTATTCCGAGT----GACTTTA---GACTTCTGAAGCG
gi|12 : TA-------------------TA-----GAT---T---TCTTTTTTC-T-T-TC--TTTT-CTT--GTTC------CTATTTATTGATTAAAATTCA-GATACCTGTGGCCAAAC--TAAAG---CATAAA
gi|13 : CATTTCTGAGCTTAATCTTGTCGGGGAATAGATATATTTTGGCAAATTTAATAG-GAGTTCTGAACCCGAATC-
gi|15 : -T-T-TCATTTCTATTT--ATAT------CTATTTATTGATTAAAATCCA-GGTACTTGTG--CATAT-ATAa
gi|16 : aatata-T-TT--TTCTATTTTAATATGGAGTCCTATTTATTGATTAAAGTTCA-GATACTTGTGtaca
gi|17 : GGAATGTACAATATATCGTAAAAGTACATGTATGTCCGTTG-TTAGATTAATACGAGT---atataa
gi|18 : aGGCCTTGGAAGGAATGTACAAAATATCATAGAAATA------TGTCCGTTG-TTGga
gi|19 : TAT------CTATTCATTGATTAAAATTCA-GATACCTGTGG
gi|2 : ttACAAACAATACGCATATACAATTTCTTTAT--TTTTTCTCATCACAATATTATATGTACT---TAGTGTTACTTTGATTTATTTGTAGA----ACCAGATTTTTTTTGGCGCGGAGATGTA-ATCTCATGATGTCAA--CATAGTTGTCAGGCCTTCGAGCGAAT-TA----ATGT--TCAAAATA------T---------------CATAAAAAG----GGACTTTA---GATTTCGGAAGCGACAGATGAGAAGGAGAA-CCATTTCTGAGCTTAACTGTGCTGGAGAATAGGTTTGTTTTGGCGACTTTAATAAGAAAATC-AGACCCAAATC-AAGGAAGGGG-TCCAAATGTTGTTCCACACCTGGTC-TAT------T--TATA-------------------TATCATGGATAT-T---TCTATGATA-TAT-TT--TTCTATTT--ATAT------CTATTTATTGATTAAAATTTA-GATATCTGTtttgg
gi|20 : GGAGGGAAATCAAAATGTCGTTGCACACC-GGTG-TAT------T--TATA-------------------
gi|3 : gTCTTTTTTCTCATCACAATATTATACA-AATAATTAGTGTAACCTTGATTCATTTGTAGATTTGATTA-ATTCATCT-GGT----AGAACCAGATTTTGTGATGTCCCATCATGGTGGTCAGGTCTTTGAGG-AATGTTCAAAATATCATAAAAGTA------TTTCCATTG-TTGGATTATTACAAGT---A-ACTTTA---GACTTCTGAAGCGACGGATGAGAAGGAAAA-TTATTTTTGAGCCTAACTGT-CCGGTGAAAAGATTAGTTTTGGCAAATTAGATGATAAAATC-AGGCCCGAATC-GAGGAAGGGG-TCAGAATGTCGTTGCACACCTG
gi|4 : ttTTACGAGT----GACTTTAAAAGACTTCTGAAGCGACGGATGAGAAGGAAAAATCATTTCTGAGCTTAACCGTGCCGGTGAATAGGTTTGTTTAGGCGAATTTGATGATAAAATC-AGACCCGAATC-GAGGAGGGGG-TCAGAATGTCGTTGCACACCTGGTG-TAT------T--TATACATGCATGTATTATATGGGTA-----GATAT-T---TTGTTTTTA-T-TATT--TTCTATTT--ATtt
gi|5 : TTTTGTGACGTCACGTCATGGTAACCAGGCCTTCGTTGAATTTTTCAAAATATCGTACAAGTA------TGTCTGTTT-TCAGATTGTTGC-AG----AAACTTTA---AATTTCGGATGAAACATATGAGATTGATAA-TCATCTCTGAGTTTAACCATGCCAGAGAAGAGG-----------GA-------AATCAGACC-AGA-TAGAATC-GCGGAGGGGG-T-AGAA-----------ATCTGGTC-TTT------T--TATA-------------------T
gi|6 : TGAGAAGAAAAA-TCATTATTGAGGTTAACCGTGCCGGTGAAAAGGTTTGTTTCGGCACATTTGATAATAAAATC-GGGTCCGAATC-GAGGAGGGGG-TCAGAATGTCGTTGCACACCTGGTG-TGTTGTATAT--TATA-------------------TA-----GATAT-A---T--TTTTTC-T-T-TT--TCCTA-TT--ATAT------CTATTTATCGATTAAAATTCA-GATACCTGTGG
gi|7 : TGGCAGTGAAAAGGTTTGTTTCGACAAATTTGATAATAAAATC-GGGTCCGAATCGGAGGAAAGGG-TCAGAATGTCGTTGCACACCT-GTGTTAT------TAATTTA-------------------TA-----GATAT-TGGGTTATTT------------TTCTATTT--A-----------------TGATTAAAATTCAGGATACCTGTGGt
gi|8 : cTTTCGTGACGTCATGTAATGGTGGTCA-GCCTTGGAAGGAATGTAC-AAATATCGTAAAATTA------TGTCCGTTGTTTAGATTATTAAGAGT----GCCTTTAG--GAATTCTGAAtt
gi|9 : tTTTCGTGACGTCATGTAATGGTGGTCAGGCCTTGGAGG--ATGTAC-AAATATCGTAAAATTA------TGT-CGTTG-TTAGATTATTAAGAGT----GCCTTTA---GAATTCTGA
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|14 ): AGGCAAAGCAAAAAGTATTGTTTGTTAAAATTTATATCCATTTGCCACACTAAAATAAAAGAAATAAAA
Alignments
lowQualScore : 11 1 2222 99999999999999999999999999999999999 111111 22222 111 111111111 3333333333333333333 11111 11111 111111 1 222
lowQualScore : 88 1 2 0 7 7777 44444444444444444444444444444444444 33 1 5 4 222222 4 77777 333 0 6 0 1 4 0 4 4 4 5 555555555 4444444444444444444 44444 00000 777 1 55 4 4 66 66 222222 5 5 777 0 111
lowQualScore : .. . . . . .... ................................... .. . . . ...... . ..... ... . . . . . . . . . . ......... ................... ..... ..... ... . .. . . .. .. ...... . . ... . ...
lowQualScore : 00 0 0 7 3 0000 33333333333333333333333333333333333 22 4 4 6 888888 4 00000 888 2 7 5 0 2 1 4 4 4 0 222222222 4444444444444444444 33333 44444 000 7 77 4 4 11 11 888888 0 0 888 0 000
consensus : ACAAACAATACGCATATACAATTNCTTTATCTTTTTTCTCATCACAATATTATACGTAATAA-TAGTGTAACCTTGATTTATTTGTAGATTT-ACCAA--TTNATCTGGC----AGA--C--A-ATTTCGTGACGTCACGTCATGGTGGTCAGGCCTTCGAGGGAATGTACAAAATATCGTAAAAGTA------TGTCCGTTG-TTGGATTATTACGAGT---AGACTTTA---GACTTCTGAAGCGACGGATGAGAAGGAAAA-TCATTTCTGAGCTTAACCGTGCCGGTGAANAGGTTTGTTTCGGCGAATTTGATAATAAAATC-GGGCCCGAATC-GAGGAGGGGG-TCAGAATGTCGTTGCACACCTGGTG-TAT------T--TATA-------------------TA-----GATAT-T---TTNTTTTTC-T-T-TC--TTCTATTT--ATAT------CTATTTATTGATTAAAATTCA-GATACCTGT-GGCANAT-ATAAAGTCTCATAAA
Reference ( family-123 ) : ACAAACAATACGCATATACAATTNCTTTATCTTTTTTCTCATCACAATATTATACGTAATAA-TAGTGTAACCTTGATTTATTTGTAGATTTGACCAA--TTNATCTGGC----AGA--C--A-ATTTCGTGACGTCACGTCATGGTGGTCAGGCCTTCGAGGGAATGTACAAAATATCGTAAAAGTA------TGTCCGTTG-TTGGATTATTACGAGT---AGACTTTA---GACTTCTGAAGCGACGGATGAGAAGGAAAA-TCATTTCTGAGCTTAACCGTGCCGGTGAANAGGTTTGTTTCGGCGAATTTGATAATAAAATC-GGGCCCGAATC-GAGGAGGGGG-TCAGAATGTCGTTGCACACCTGGTG-TAT------T--TATA-------------------TA-----GATAT-T---TTNTTTTTC-T-T-TC--TTCTATTT--ATAT------CTATTTATTGATTAAAATTCA-GATACCTGT-GGCANAT-ATAAAGTCTCATAAA
gi|1 : ACAAA--ATATGCATATACAATTATTTTATTTTTTTTCTCATAACAACATTATATGTAATAA--AGTGTAACCTTAATTTATTTGTAAATTT----AA--TTAAT-------------------ATTTCTTGACGTCTTGTCATGGCAGTCAGGTCTTCGAGGGAATGTTCAAAATATCGTAAAAGTA------TGCCTGTTT-TTGGATTGTTACGAGTGATAGACTTTA---GACTTCTGAAGAGACGGTTGAGAAGGAAAA-TCATTTCTTAGCTTAACTGTGCCAATAAATAGGTTTGTTTTGGCAAATTTGATAATAAAACC-GGGCCTGAATC-AAGGAGGGGG-TCAGAATGTCGTTGCACGCTTGGTG-TAT------T--TATA-------------------TA-----GATATAT---TTTTTTTTC-T-T-TC--TTCTATCT--ATAT------TTATTTGTTGATTAAAATTCA-GATACCTCTGGGTAGATAATGAAGTCTCATAAA
gi|10 : TGATAAAATC-GGGCCCGAATC-CAGGAGGGGG-TCAGAATATCGTTGCACACCTGATG-------------TAGA-------------------GA-----GATAT-T---TTG---TTCAT-T-TC--TTCTATTT--ATAT------CTATTTATaagtgttccatttcgggactcgatttttgtttggtcagcagaaatgtaaaaaataaaa
gi|11 : TCAGGCCTTCGAAGGAATGTACAAAATATCGTAAAAGTA------TGTCCGTTG-TTGGGTTATTCCGAGT----GACTTTA---GACTTCTGAAGCG
gi|12 : TA-------------------TA-----GAT---T---TCTTTTTTC-T-T-TC--TTTT-CTT--GTTC------CTATTTATTGATTAAAATTCA-GATACCTGT-GGCCAAA-CTAAAG---CATAAA
gi|13 : CATTTCTGAGCTTAATCTTGTCGGGGAATAGATATATTTTGGCAAATTTAATAG-GAGTTCTGAACCCGAATC-
gi|15 : -T-T-TCATTTCTATTT--ATAT------CTATTTATTGATTAAAATCCA-GGTACTTGT--GCATAT-ATAa
gi|16 : aatata-T-TT--TTCTATTTTAATATGGAGTCCTATTTATTGATTAAAGTTCA-GATACTTGT-G----AT-ATAAtaca
gi|17 : GGAATGTACAATATATCGTAAAAGTACATGTATGTCCGTTG-TTAGATTAATACGAGT---
gi|18 : aGGCCTTGGAAGGAATGTACAAAATATCATAGAAATA------TGTCCGTTG-TTGga
gi|19 : TAT------CTATTCATTGATTAAAATTCA-GATACCTGT-GG
gi|2 : ttACAAACAATACGCATATACAATTTCTTTAT--TTTTTCTCATCACAATATTATATGTACT---TAGTGTTACTTTGATTTATTTGTAGA----ACCAGATTTTTTTTGGCGCGGAGA--TGTA-ATCTCATGATGTCAA--CATAGTTGTCAGGCCTTCGAGCGAAT-TA----ATGT--TCAAAATA------T---------------CATAAAAAG----GGACTTTA---GATTTCGGAAGCGACAGATGAGAAGGAGAA-CCATTTCTGAGCTTAACTGTGCTGGAGAATAGGTTTGTTTTGGCGACTTTAATAAGAAAATC-AGACCCAAATC-AAGGAAGGGG-TCCAAATGTTGTTCCACACCTGGTC-TAT------T--TATA-------------------TATCATGGATAT-T---TCTATGATA-TAT-TT--TTCTATTT--ATAT------CTATTTATTGATTAAAATTTA-GATATCTGT-tttgg
gi|20 : GGAGGGAAATCAAAATGTCGTTGCACACC-GGTG-TAT------T--TATA-------------------
gi|3 : gTCTTTTTTCTCATCACAATATTATACA-AATAATTAGTGTAACCTTGATTCATTTGTAGATTTGATTAA--TTCATCTGGT----AGAACC--AGATTTTGTGATGTCCCATCATGGTGGTCAGGTCTTTGA-GGAATGTTCAAAATATCATAAAAGTA------TTTCCATTG-TTGGATTATTACAAGT---A-ACTTTA---GACTTCTGAAGCGACGGATGAGAAGGAAAA-TTATTTTTGAGCCTAACTGT-CCGGTGAAAAGATTAGTTTTGGCAAATTAGATGATAAAATC-AGGCCCGAATC-GAGGAAGGGG-TCAGAATGTCGTTGCACACCTG
gi|4 : ttTTACGAGT----GACTTTAAAAGACTTCTGAAGCGACGGATGAGAAGGAAAAATCATTTCTGAGCTTAACCGTGCCGGTGAATAGGTTTGTTTAGGCGAATTTGATGATAAAATC-AGACCCGAATC-GAGGAGGGGG-TCAGAATGTCGTTGCACACCTGGTG-TAT------T--TATACATGCATGTATTATATGGGTA-----GATAT-T---TTGTTTTTA-T-TATT--TTCTATTT--ATtt
gi|5 : TTTTGTGACGTCACGTCATGGTAACCAGGCCTTCGTTGAATTTTTCAAAATATCGTACAAGTA------TGTCTGTTT-TCAGATTGTTGC-AG----AAACTTTA---AATTTCGGATGAAACATATGAGATTGATAA-TCATCTCTGAGTTTAACCATGCCAGAGAAGAGG-----------GA-------AATCAGACC-AGA-TAGAATC-GCGGAGGGGG-T-AGAA-----------ATCTGGTC-TTT------T--TATA-------------------T
gi|6 : TGAGAAGAAAAA-TCATTATTGAGGTTAACCGTGCCGGTGAAAAGGTTTGTTTCGGCACATTTGATAATAAAATC-GGGTCCGAATC-GAGGAGGGGG-TCAGAATGTCGTTGCACACCTGGTG-TGTTGTATAT--TATA-------------------TA-----GATAT-A---T--TTTTTC-T-T-TT--TCCTA-TT--ATAT------CTATTTATCGATTAAAATTCA-GATACCTGT-GG
gi|7 : TGGCAGTGAAAAGGTTTGTTTCGACAAATTTGATAATAAAATC-GGGTCCGAATCGGAGGAAAGGG-TCAGAATGTCGTTGCACACCT-GTGTTAT------TAATTTA-------------------TA-----GATAT-TGGGTTATTT------------TTCTATTT--A-----------------TGATTAAAATTCAGGATACCTGT-GGt
gi|8 : cTTTCGTGACGTCATGTAATGGTGGTCA-GCCTTGGAAGGAATGTAC-AAATATCGTAAAATTA------TGTCCGTTGTTTAGATTATTAAGAGT----GCCTTTAG--GAATTCTGAAtt
gi|9 : tTTTCGTGACGTCATGTAATGGTGGTCAGGCCTTGGAGG--ATGTAC-AAATATCGTAAAATTA------TGT-CGTTG-TTAGATTATTAAGAGT----GCCTTTA---GAATTCTGA
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|14 ): AGGCAAAGCAAAAAGTATTGTTTGTTAAAATTTATATCCATTTGCCACACTAAAATAAAAGAAATAAAA
Alignments
lowQualScore : 11111111111111111111111111111111111
lowQualScore : 11 1 2222 00000000000000000000000000000000000 111111 22222 111 111111111 3333333333333333333 11111 11111 111111 1 222
lowQualScore : 88 1 2 0 7 7777 11111111111111111111111111111111111 33 1 2 4 222222 4 77777 333 0 6 0 1 4 0 4 4 4 5 555555555 4444444444444444444 44444 00000 777 1 55 4 4 66 66 222222 5 5 777 0 111
lowQualScore : .. . . . . .... ................................... .. . . . ...... . ..... ... . . . . . . . . . . ......... ................... ..... ..... ... . .. . . .. .. ...... . . ... . ...
lowQualScore : 00 0 0 7 3 0000 00000000000000000000000000000000000 22 4 9 6 888888 4 00000 888 2 7 5 0 2 1 4 4 4 0 222222222 4444444444444444444 33333 44444 000 7 77 4 4 11 11 888888 0 0 888 0 000
consensus : ACAAACAATACGCATATACAATTNCTTTATCTTTTTTCTCATCACAATATTATACGTAATAAT-AGTGTAACCTTGATTTATTTGTAGATTT-ACCAA--TTNATCTGGC----AGA--C--A-ATTTCGTGACGTCACGTCATGGTGGTCAGGCCTTCGAGGGAATGTACAAAATATCGTAAAAGTA------TGTCCGTTG-TTGGATTATTACGAGT---AGACTTTA---GACTTCTGAAGCGACGGATGAGAAGGAAAA-TCATTTCTGAGCTTAACCGTGCCGGTGAANAGGTTTGTTTCGGCGAATTTGATAATAAAATC-GGGCCCGAATC-GAGGAGGGGG-TCAGAATGTCGTTGCACACCTGGTG-TAT------T--TATA-------------------TA-----GATAT-T---TTNTTTTTC-T-T-TC--TTCTATTT--ATAT------CTATTTATTGATTAAAATTCA-GATACCTGT-GGCANAT-ATAAAGTCTCATAAA
Reference ( family-123 ) : ACAAACAATACGCATATACAATTNCTTTATCTTTTTTCTCATCACAATATTATACGTAATAAT-AGTGTAACCTTGATTTATTTGTAGATTT-ACCAA--TTNATCTGGC----AGA--C--A-ATTTCGTGACGTCACGTCATGGTGGTCAGGCCTTCGAGGGAATGTACAAAATATCGTAAAAGTA------TGTCCGTTG-TTGGATTATTACGAGT---AGACTTTA---GACTTCTGAAGCGACGGATGAGAAGGAAAA-TCATTTCTGAGCTTAACCGTGCCGGTGAANAGGTTTGTTTCGGCGAATTTGATAATAAAATC-GGGCCCGAATC-GAGGAGGGGG-TCAGAATGTCGTTGCACACCTGGTG-TAT------T--TATA-------------------TA-----GATAT-T---TTNTTTTTC-T-T-TC--TTCTATTT--ATAT------CTATTTATTGATTAAAATTCA-GATACCTGT-GGCANAT-ATAAAGTCTCATAAA
gi|1 : ACAAA--ATATGCATATACAATTATTTTATTTTTTTTCTCATAACAACATTATATGTAATAA--AGTGTAACCTTAATTTATTTGTAAATTT-A---A--TTAAT-------------------ATTTCTTGACGTCTTGTCATGGCAGTCAGGTCTTCGAGGGAATGTTCAAAATATCGTAAAAGTA------TGCCTGTTT-TTGGATTGTTACGAGTGATAGACTTTA---GACTTCTGAAGAGACGGTTGAGAAGGAAAA-TCATTTCTTAGCTTAACTGTGCCAATAAATAGGTTTGTTTTGGCAAATTTGATAATAAAACC-GGGCCTGAATC-AAGGAGGGGG-TCAGAATGTCGTTGCACGCTTGGTG-TAT------T--TATA-------------------TA-----GATATAT---TTTTTTTTC-T-T-TC--TTCTATCT--ATAT------TTATTTGTTGATTAAAATTCA-GATACCTCTGGGTAGATAATGAAGTCTCATAAA
gi|10 : TGATAAAATC-GGGCCCGAATC-CAGGAGGGGG-TCAGAATATCGTTGCACACCTGATG-------------TAGA-------------------GA-----GATAT-T---TTG---TTCAT-T-TC--TTCTATTT--ATAT------CTATTTATaagtgttccatttcgggactcgatttttgtttggtcagcagaaatgtaaaaaataaaa
gi|11 : TCAGGCCTTCGAAGGAATGTACAAAATATCGTAAAAGTA------TGTCCGTTG-TTGGGTTATTCCGAGT----GACTTTA---GACTTCTGAAGCG
gi|12 : TA-------------------TA-----GAT---T---TCTTTTTTC-T-T-TC--TTTT-CTT--GTTC------CTATTTATTGATTAAAATTCA-GATACCTGT-GGCCAAA-CTAAAG---CATAAA
gi|13 : CATTTCTGAGCTTAATCTTGTCGGGGAATAGATATATTTTGGCAAATTTAATAG-GAGTTCTGAACCCGAATC-
gi|15 : -T-T-TCATTTCTATTT--ATAT------CTATTTATTGATTAAAATCCA-GGTACTTGT--GCATAT-ATAa
gi|16 : aatata-T-TT--TTCTATTTTAATATGGAGTCCTATTTATTGATTAAAGTTCA-GATACTTGT-G----AT-ATAAtaca
gi|17 : GGAATGTACAATATATCGTAAAAGTACATGTATGTCCGTTG-TTAGATTAATACGAGT---
gi|18 : aGGCCTTGGAAGGAATGTACAAAATATCATAGAAATA------TGTCCGTTG-TTGga
gi|19 : TAT------CTATTCATTGATTAAAATTCA-GATACCTGT-GG
gi|2 : ttACAAACAATACGCATATACAATTTCTTTAT--TTTTTCTCATCACAATATTATATGTACT--T-AGTGTTACTTTGATTTATTTGTAGA----ACCAGATTTTTTTTGGCGCGGAGA--TGTA-ATCTCATGATGTCAA--CATAGTTGTCAGGCCTTCGAGCGAAT-TA----ATGT--TCAAAATA------T---------------CATAAAAAG----GGACTTTA---GATTTCGGAAGCGACAGATGAGAAGGAGAA-CCATTTCTGAGCTTAACTGTGCTGGAGAATAGGTTTGTTTTGGCGACTTTAATAAGAAAATC-AGACCCAAATC-AAGGAAGGGG-TCCAAATGTTGTTCCACACCTGGTC-TAT------T--TATA-------------------TATCATGGATAT-T---TCTATGATA-TAT-TT--TTCTATTT--ATAT------CTATTTATTGATTAAAATTTA-GATATCTGT-tttgg
gi|20 : GGAGGGAAATCAAAATGTCGTTGCACACC-GGTG-TAT------T--TATA-------------------
gi|3 : gTCTTTTTTCTCATCACAATATTATACA-AATAATTAGTGTAACCTTGATTCATTTGTAGATTTGATTAA--TTCATCTGGT----AGAACC--AGATTTTGTGATGTCCCATCATGGTGGTCAGGTCTTTGAGG-AATGTTCAAAATATCATAAAAGTA------TTTCCATTG-TTGGATTATTACAAGT---A-ACTTTA---GACTTCTGAAGCGACGGATGAGAAGGAAAA-TTATTTTTGAGCCTAACTGT-CCGGTGAAAAGATTAGTTTTGGCAAATTAGATGATAAAATC-AGGCCCGAATC-GAGGAAGGGG-TCAGAATGTCGTTGCACACCTG
gi|4 : ttTTACGAGT----GACTTTAAAAGACTTCTGAAGCGACGGATGAGAAGGAAAAATCATTTCTGAGCTTAACCGTGCCGGTGAATAGGTTTGTTTAGGCGAATTTGATGATAAAATC-AGACCCGAATC-GAGGAGGGGG-TCAGAATGTCGTTGCACACCTGGTG-TAT------T--TATACATGCATGTATTATATGGGTA-----GATAT-T---TTGTTTTTA-T-TATT--TTCTATTT--ATtt
gi|5 : TTTTGTGACGTCACGTCATGGTAACCAGGCCTTCGTTGAATTTTTCAAAATATCGTACAAGTA------TGTCTGTTT-TCAGATTGTTGC-AG----AAACTTTA---AATTTCGGATGAAACATATGAGATTGATAA-TCATCTCTGAGTTTAACCATGCCAGAGAAGAGG-----------GA-------AATCAGACC-AGA-TAGAATC-GCGGAGGGGG-T-AGAA-----------ATCTGGTC-TTT------T--TATA-------------------T
gi|6 : TGAGAAGAAAAA-TCATTATTGAGGTTAACCGTGCCGGTGAAAAGGTTTGTTTCGGCACATTTGATAATAAAATC-GGGTCCGAATC-GAGGAGGGGG-TCAGAATGTCGTTGCACACCTGGTG-TGTTGTATAT--TATA-------------------TA-----GATAT-A---T--TTTTTC-T-T-TT--TCCTA-TT--ATAT------CTATTTATCGATTAAAATTCA-GATACCTGT-GG
gi|7 : TGGCAGTGAAAAGGTTTGTTTCGACAAATTTGATAATAAAATC-GGGTCCGAATCGGAGGAAAGGG-TCAGAATGTCGTTGCACACCT-GTGTTAT------TAATTTA-------------------TA-----GATAT-TGGGTTATTT------------TTCTATTT--A-----------------TGATTAAAATTCAGGATACCTGT-GGt
gi|8 : cTTTCGTGACGTCATGTAATGGTGGTCA-GCCTTGGAAGGAATGTAC-AAATATCGTAAAATTA------TGTCCGTTGTTTAGATTATTAAGAGT----GCCTTTAG--GAATTCTGAAtt
gi|9 : tTTTCGTGACGTCATGTAATGGTGGTCAGGCCTTGGAGG--ATGTAC-AAATATCGTAAAATTA------TGT-CGTTG-TTAGATTATTAAGAGT----GCCTTTA---GAATTCTGA
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|14 ): AGGCAAAGCAAAAAGTATTGTTTGTTAAAATTTATATCCATTTGCCACACTAAAATAAAAGAAATAAAA
Alignments
lowQualScore : 11111111111111111111111111111111111
lowQualScore : 11 1 2222 00000000000000000000000000000000000 111111 22222 111 111111111 3333333333333333333 11111 11111 111111 1 222
lowQualScore : 88 1 2 0 7 7777 11111111111111111111111111111111111 33 1 2 4 222222 4 77777 333 0 6 0 1 4 0 4 4 4 5 555555555 4444444444444444444 44444 00000 777 1 55 4 4 66 66 222222 5 5 777 0 111
lowQualScore : .. . . . . .... ................................... .. . . . ...... . ..... ... . . . . . . . . . . ......... ................... ..... ..... ... . .. . . .. .. ...... . . ... . ...
lowQualScore : 00 0 0 7 3 0000 00000000000000000000000000000000000 22 4 9 6 888888 4 00000 888 2 7 5 0 2 1 4 4 4 0 222222222 4444444444444444444 33333 44444 000 7 77 4 4 11 11 888888 0 0 888 0 000
consensus : ACAAACAATACGCATATACAATTNCTTTATCTTTTTTCTCATCACAATATTATACGTAATAAT-AGTGTAACCTTGATTTATTTGTAGATTT-ACCAA--TTNATCTGGC----AGA--C--A-ATTTCGTGACGTCACGTCATGGTGGTCAGGCCTTCGAGGGAATGTACAAAATATCGTAAAAGTA------TGTCCGTTG-TTGGATTATTACGAGT---AGACTTTA---GACTTCTGAAGCGACGGATGAGAAGGAAAA-TCATTTCTGAGCTTAACCGTGCCGGTGAANAGGTTTGTTTCGGCGAATTTGATAATAAAATC-GGGCCCGAATC-GAGGAGGGGG-TCAGAATGTCGTTGCACACCTGGTG-TAT------T--TATA-------------------TA-----GATAT-T---TTNTTTTTC-T-T-TC--TTCTATTT--ATAT------CTATTTATTGATTAAAATTCA-GATACCTGT-GGCANAT-ATAAAGTCTCATAAA
Reference ( family-123 ) : ACAAACAATACGCATATACAATTNCTTTATCTTTTTTCTCATCACAATATTATACGTAATAAT-AGTGTAACCTTGATTTATTTGTAGATTT-ACCAA--TTNATCTGGC----AGA--C--A-ATTTCGTGACGTCACGTCATGGTGGTCAGGCCTTCGAGGGAATGTACAAAATATCGTAAAAGTA------TGTCCGTTG-TTGGATTATTACGAGT---AGACTTTA---GACTTCTGAAGCGACGGATGAGAAGGAAAA-TCATTTCTGAGCTTAACCGTGCCGGTGAANAGGTTTGTTTCGGCGAATTTGATAATAAAATC-GGGCCCGAATC-GAGGAGGGGG-TCAGAATGTCGTTGCACACCTGGTG-TAT------T--TATA-------------------TA-----GATAT-T---TTNTTTTTC-T-T-TC--TTCTATTT--ATAT------CTATTTATTGATTAAAATTCA-GATACCTGT-GGCANAT-ATAAAGTCTCATAAA
gi|1 : ACAAA--ATATGCATATACAATTATTTTATTTTTTTTCTCATAACAACATTATATGTAATAA--AGTGTAACCTTAATTTATTTGTAAATTT-A---A--TTAAT-------------------ATTTCTTGACGTCTTGTCATGGCAGTCAGGTCTTCGAGGGAATGTTCAAAATATCGTAAAAGTA------TGCCTGTTT-TTGGATTGTTACGAGTGATAGACTTTA---GACTTCTGAAGAGACGGTTGAGAAGGAAAA-TCATTTCTTAGCTTAACTGTGCCAATAAATAGGTTTGTTTTGGCAAATTTGATAATAAAACC-GGGCCTGAATC-AAGGAGGGGG-TCAGAATGTCGTTGCACGCTTGGTG-TAT------T--TATA-------------------TA-----GATATAT---TTTTTTTTC-T-T-TC--TTCTATCT--ATAT------TTATTTGTTGATTAAAATTCA-GATACCTCTGGGTAGATAATGAAGTCTCATAAA
gi|10 : TGATAAAATC-GGGCCCGAATC-CAGGAGGGGG-TCAGAATATCGTTGCACACCTGATG-------------TAGA-------------------GA-----GATAT-T---TTG---TTCAT-T-TC--TTCTATTT--ATAT------CTATTTATaagtgttccatttcgggactcgatttttgtttggtcagcagaaatgtaaaaaataaaa
gi|11 : TCAGGCCTTCGAAGGAATGTACAAAATATCGTAAAAGTA------TGTCCGTTG-TTGGGTTATTCCGAGT----GACTTTA---GACTTCTGAAGCG
gi|12 : TA-------------------TA-----GAT---T---TCTTTTTTC-T-T-TC--TTTT-CTT--GTTC------CTATTTATTGATTAAAATTCA-GATACCTGT-GGCCAAA-CTAAAG---CATAAA
gi|13 : CATTTCTGAGCTTAATCTTGTCGGGGAATAGATATATTTTGGCAAATTTAATAG-GAGTTCTGAACCCGAATC-
gi|15 : -T-T-TCATTTCTATTT--ATAT------CTATTTATTGATTAAAATCCA-GGTACTTGT--GCATAT-ATAa
gi|16 : aatata-T-TT--TTCTATTTTAATATGGAGTCCTATTTATTGATTAAAGTTCA-GATACTTGT-G----AT-ATAAtaca
gi|17 : GGAATGTACAATATATCGTAAAAGTACATGTATGTCCGTTG-TTAGATTAATACGAGT---
gi|18 : aGGCCTTGGAAGGAATGTACAAAATATCATAGAAATA------TGTCCGTTG-TTGga
gi|19 : TAT------CTATTCATTGATTAAAATTCA-GATACCTGT-GG
gi|2 : ttACAAACAATACGCATATACAATTTCTTTAT--TTTTTCTCATCACAATATTATATGTACT--T-AGTGTTACTTTGATTTATTTGTAGA----ACCAGATTTTTTTTGGCGCGGAGA--TGTA-ATCTCATGATGTCAA--CATAGTTGTCAGGCCTTCGAGCGAAT-TA----ATGT--TCAAAATA------T---------------CATAAAAAG----GGACTTTA---GATTTCGGAAGCGACAGATGAGAAGGAGAA-CCATTTCTGAGCTTAACTGTGCTGGAGAATAGGTTTGTTTTGGCGACTTTAATAAGAAAATC-AGACCCAAATC-AAGGAAGGGG-TCCAAATGTTGTTCCACACCTGGTC-TAT------T--TATA-------------------TATCATGGATAT-T---TCTATGATA-TAT-TT--TTCTATTT--ATAT------CTATTTATTGATTAAAATTTA-GATATCTGT-tttgg
gi|20 : GGAGGGAAATCAAAATGTCGTTGCACACC-GGTG-TAT------T--TATA-------------------
gi|3 : gTCTTTTTTCTCATCACAATATTATACA-AATAATTAGTGTAACCTTGATTCATTTGTAGATTTGATTAA--TTCATCTGGT----AGAACC--AGATTTTGTGATGTCCCATCATGGTGGTCAGGTCTTTGAGG-AATGTTCAAAATATCATAAAAGTA------TTTCCATTG-TTGGATTATTACAAGT---A-ACTTTA---GACTTCTGAAGCGACGGATGAGAAGGAAAA-TTATTTTTGAGCCTAACTGT-CCGGTGAAAAGATTAGTTTTGGCAAATTAGATGATAAAATC-AGGCCCGAATC-GAGGAAGGGG-TCAGAATGTCGTTGCACACCTG
gi|4 : ttTTACGAGT----GACTTTAAAAGACTTCTGAAGCGACGGATGAGAAGGAAAAATCATTTCTGAGCTTAACCGTGCCGGTGAATAGGTTTGTTTAGGCGAATTTGATGATAAAATC-AGACCCGAATC-GAGGAGGGGG-TCAGAATGTCGTTGCACACCTGGTG-TAT------T--TATACATGCATGTATTATATGGGTA-----GATAT-T---TTGTTTTTA-T-TATT--TTCTATTT--ATtt
gi|5 : TTTTGTGACGTCACGTCATGGTAACCAGGCCTTCGTTGAATTTTTCAAAATATCGTACAAGTA------TGTCTGTTT-TCAGATTGTTGC-AG----AAACTTTA---AATTTCGGATGAAACATATGAGATTGATAA-TCATCTCTGAGTTTAACCATGCCAGAGAAGAGG-----------GA-------AATCAGACC-AGA-TAGAATC-GCGGAGGGGG-T-AGAA-----------ATCTGGTC-TTT------T--TATA-------------------T
gi|6 : TGAGAAGAAAAA-TCATTATTGAGGTTAACCGTGCCGGTGAAAAGGTTTGTTTCGGCACATTTGATAATAAAATC-GGGTCCGAATC-GAGGAGGGGG-TCAGAATGTCGTTGCACACCTGGTG-TGTTGTATAT--TATA-------------------TA-----GATAT-A---T--TTTTTC-T-T-TT--TCCTA-TT--ATAT------CTATTTATCGATTAAAATTCA-GATACCTGT-GG
gi|7 : TGGCAGTGAAAAGGTTTGTTTCGACAAATTTGATAATAAAATC-GGGTCCGAATCGGAGGAAAGGG-TCAGAATGTCGTTGCACACCT-GTGTTAT------TAATTTA-------------------TA-----GATAT-TGGGTTATTT------------TTCTATTT--A-----------------TGATTAAAATTCAGGATACCTGT-GGt
gi|8 : cTTTCGTGACGTCATGTAATGGTGGTCA-GCCTTGGAAGGAATGTAC-AAATATCGTAAAATTA------TGTCCGTTGTTTAGATTATTAAGAGT----GCCTTTAG--GAATTCTGAAtt
gi|9 : tTTTCGTGACGTCATGTAATGGTGGTCAGGCCTTGGAGG--ATGTAC-AAATATCGTAAAATTA------TGT-CGTTG-TTAGATTATTAAGAGT----GCCTTTA---GAATTCTGA
blockSeqs : CA T C T AATT ACCAGATTTTTTTTGGCGCGGAGATGTA CA C G A CATGTA T TA AAA A T T T G A T TGTATAT CATGCATGTATTATATGGG TCATG TGGG CTT T CA A A AT TA GGAGTC G . CCA . .
blockSeqs : . . T TTTGATTAATTCATCTGGTAGAACCAG CG G G A . . T G . T T . . . . TAA . . T CTA T C . . . . . . . CAT .
blockSeqs : TG C G A . . G . . A T . . . . T . . T TGT A A . . . . . . . . .
blockSeqs : TG T G A . . T . . T A . . . . T . . T TAT T A . . . . . . .
blockSeqs : A C A A . . A . . G C . . . . T . . T TG T C . . . . . . .
blockSeqs : G G . . . T . A C . . . . T . . A T . . . . . . . . .
blockSeqs : G . . . . T . A . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . . .
blockSeqCons : T**** T****
originalCons : ACAAACAATACGCATATACAATTNCTTTATCTTTTTTCTCATCACAATATTATACGTAATAAT-AGTGTAACCTTGATTTATTTGTAGATTT-ACCAA--TTNATCTGGC----AGA--C--A-ATTTCGTGACGTCACGTCATGGTGGTCAGGCCTTCGAGGGAATGTACAAAATATCGTAAAAGTA------TGTCCGTTG-TTGGATTATTACGAGT---AGACTTTA---GACTTCTGAAGCGACGGATGAGAAGGAAAA-TCATTTCTGAGCTTAACCGTGCCGGTGAANAGGTTTGTTTCGGCGAATTTGATAATAAAATC-GGGCCCGAATC-GAGGAGGGGG-TCAGAATGTCGTTGCACACCTGGTG-TAT------T--TATA-------------------TA-----GATAT-T---TTNTTTTTC-T-T-TC--TTCTATTT--ATAT------CTATTTATTGATTAAAATTCA-GATACCTGT-GGCANAT-ATAAAGTCTCATAAA
finalCons : ACAAACAATACGCATATACAATTNCTTTATCTTTTTTCTCATCACAATATTATACGTAATAAT-AGTGTAACCTTGATTTATTTGTAGATTT-ACCAA--TTNATCTGGC----AGA--C--A-ATTTCGTGACGTCACGTCATGGTGGTCAGGCCTTCGAGGGAATGTACAAAATATCGTAAAAGTA------TGTCCGTTG-TTGGATTATTACGAGT----GACTTTA---GACTTCTGAAGCGACGGATGAGAAGGAAAA-TCATTTCTGAGCTTAACCGTGCCGGTGAANAGGTTTGTTTCGGCGAATTTGATAATAAAATC-GGGCCCGAATC-GAGGAGGGGG-TCAGAATGTCGTTGCACACCTGGTG-TAT------T--TATA-------------------TA-----GATATT----TTNTTTTTC-T-T-TC--TTCTATTT--ATAT------CTATTTATTGATTAAAATTCA-GATACCTGT-GGCANAT-ATAAAGTCTCATAAA
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|14 ): AGGCAAAGCAAAAAGTATTGTTTGTTAAAATTTATATCCATTTGCCACACTAAAATAAAAGAAATAAAA
Alignments
lowQualScore : 11111111111111111111111111111111111
lowQualScore : 11 1 2222 00000000000000000000000000000000000 111111 111 111111111 3333333333333333333 11111 11111 111111 1 222
lowQualScore : 88 1 2 0 7 7777 11111111111111111111111111111111111 33 1 2 9999 2 1 2 222222 4 0 9999 333 0 6 0 1 4 0 4 4 4 5 555555555 4444444444444444444 44444 00000 777 1 55 4 4 66 66 222222 5 5 777 0 111
lowQualScore : .. . . . . .... ................................... .. . . .... . . . ...... . . .... ... . . . . . . . . . . ......... ................... ..... ..... ... . .. . . .. .. ...... . . ... . ...
lowQualScore : 00 0 0 7 3 0000 00000000000000000000000000000000000 22 4 9 4444 6 9 9 888888 4 1 4444 888 2 7 5 0 2 1 4 4 4 0 222222222 4444444444444444444 33333 44444 000 7 77 4 4 11 11 888888 0 0 888 0 000
consensus : ACAAACAATACGCATATACAATTNCTTTATCTTTTTTCTCATCACAATATTATACGTAATAAT-AGTGTAACCTTGATTTATTTGTAGATTT-ACCAA--TTNATCTGGC----AGA--C--A-ATTTCGTGACGTCACGTCATGGTGGTCAGGCCTTCGAGGGAAT----GTNCAAAATATCGTAAAAGTA------TGTCCGTTG-TTGGATTATTACGAGTGA----CTTTA---GACTTCTGAAGCGACGGATGAGAAGGAAAA-TCATTTCTGAGCTTAACCGTGCCGGTGAANAGGTTTGTTTCGGCGAATTTGATAATAAAATC-GGGCCCGAATC-GAGGAGGGGG-TCAGAATGTCGTTGCACACCTGGTG-TAT------T--TATA-------------------TA-----GATAT-T---TTNTTTTTC-T-T-TC--TTCTATTT--ATAT------CTATTTATTGATTAAAATTCA-GATACCTGT-GGCANAT-ATAAAGTCTCATAAA
Reference ( family-123 ) : ACAAACAATACGCATATACAATTNCTTTATCTTTTTTCTCATCACAATATTATACGTAATAAT-AGTGTAACCTTGATTTATTTGTAGATTT-ACCAA--TTNATCTGGC----AGA--C--A-ATTTCGTGACGTCACGTCATGGTGGTCAGGCCTTCGAGGGAAT----GTACAAAATATCGTAAAAGTA------TGTCCGTTG-TTGGATTATTACGAGTGA----CTTTA---GACTTCTGAAGCGACGGATGAGAAGGAAAA-TCATTTCTGAGCTTAACCGTGCCGGTGAANAGGTTTGTTTCGGCGAATTTGATAATAAAATC-GGGCCCGAATC-GAGGAGGGGG-TCAGAATGTCGTTGCACACCTGGTG-TAT------T--TATA-------------------TA-----GATAT-T---TTNTTTTTC-T-T-TC--TTCTATTT--ATAT------CTATTTATTGATTAAAATTCA-GATACCTGT-GGCANAT-ATAAAGTCTCATAAA
gi|1 : ACAAA--ATATGCATATACAATTATTTTATTTTTTTTCTCATAACAACATTATATGTAATAA--AGTGTAACCTTAATTTATTTGTAAATTT-A---A--TTAAT-------------------ATTTCTTGACGTCTTGTCATGGCAGTCAGGTCTTCGAGGGAAT----GTTCAAAATATCGTAAAAGTA------TGCCTGTTT-TTGGATTGTTACGAGTGATAGACTTTA---GACTTCTGAAGAGACGGTTGAGAAGGAAAA-TCATTTCTTAGCTTAACTGTGCCAATAAATAGGTTTGTTTTGGCAAATTTGATAATAAAACC-GGGCCTGAATC-AAGGAGGGGG-TCAGAATGTCGTTGCACGCTTGGTG-TAT------T--TATA-------------------TA-----GATATAT---TTTTTTTTC-T-T-TC--TTCTATCT--ATAT------TTATTTGTTGATTAAAATTCA-GATACCTCTGGGTAGATAATGAAGTCTCATAAA
gi|10 : TGATAAAATC-GGGCCCGAATC-CAGGAGGGGG-TCAGAATATCGTTGCACACCTGATG-------------TAGA-------------------GA-----GATAT-T---TTG---TTCAT-T-TC--TTCTATTT--ATAT------CTATTTATaagtgttccatttcgggactcgatttttgtttggtcagcagaaatgtaaaaaataaaa
gi|11 : TCAGGCCTTCGAAGGAAT----GTACAAAATATCGTAAAAGTA------TGTCCGTTG-TTGGGTTATTCCGAGTGA----CTTTA---GACTTCTGAAGCG
gi|12 : TA-------------------TA-----GAT---T---TCTTTTTTC-T-T-TC--TTTT-CTT--GTTC------CTATTTATTGATTAAAATTCA-GATACCTGT-GGCCAAA-CTAAAG---CATAAA
gi|13 : CATTTCTGAGCTTAATCTTGTCGGGGAATAGATATATTTTGGCAAATTTAATAG-GAGTTCTGAACCCGAATC-
gi|15 : -T-T-TCATTTCTATTT--ATAT------CTATTTATTGATTAAAATCCA-GGTACTTGT--GCATAT-ATAa
gi|16 : aatata-T-TT--TTCTATTTTAATATGGAGTCCTATTTATTGATTAAAGTTCA-GATACTTGT-G----AT-ATAAtaca
gi|17 : GGAAT----GTACAATATATCGTAAAAGTACATGTATGTCCGTTG-TTAGATTAATACGAGTGA----
gi|18 : aGGCCTTGGAAGGAAT----GTACAAAATATCATAGAAATA------TGTCCGTTG-TTG
gi|19 : TAT------CTATTCATTGATTAAAATTCA-GATACCTGT-GG
gi|2 : ttACAAACAATACGCATATACAATTTCTTTAT--TTTTTCTCATCACAATATTATATGTACT--T-AGTGTTACTTTGATTTATTTGTAGA----ACCAGATTTTTTTTGGCGCGGAGA--TGTA-ATCTCATGATGTCAA--CATAGTTGTCAGGCCTTCGAGCGAATTAATGTTCAAAATATCATAAAA--------------------------------AGGGA----CTTTA---GATTTCGGAAGCGACAGATGAGAAGGAGAA-CCATTTCTGAGCTTAACTGTGCTGGAGAATAGGTTTGTTTTGGCGACTTTAATAAGAAAATC-AGACCCAAATC-AAGGAAGGGG-TCCAAATGTTGTTCCACACCTGGTC-TAT------T--TATA-------------------TATCATGGATAT-T---TCTATGATA-TAT-TT--TTCTATTT--ATAT------CTATTTATTGATTAAAATTTA-GATATCTGT-tttgg
gi|20 : GGAGGGAAATCAAAATGTCGTTGCACACC-GGTG-TAT------T--TATA-------------------
gi|3 : gTCTTTTTTCTCATCACAATATTATACA-AATAATTAGTGTAACCTTGATTCATTTGTAGATTTGATTAA--TTCATCTGGT----AGAACC--AGATTTTGTGATGTCCCATCATGGTGGTCAGGTCTTTGAGG-AAT----GTTCAAAATATCATAAAAGTA------TTTCCATTG-TTGGATTATTACAAGTAA----CTTTA---GACTTCTGAAGCGACGGATGAGAAGGAAAA-TTATTTTTGAGCCTAACTGT-CCGGTGAAAAGATTAGTTTTGGCAAATTAGATGATAAAATC-AGGCCCGAATC-GAGGAAGGGG-TCAGAATGTCGTTGCACACCTG
gi|4 : ttTTACGAGTGA----CTTTAAAAGACTTCTGAAGCGACGGATGAGAAGGAAAAATCATTTCTGAGCTTAACCGTGCCGGTGAATAGGTTTGTTTAGGCGAATTTGATGATAAAATC-AGACCCGAATC-GAGGAGGGGG-TCAGAATGTCGTTGCACACCTGGTG-TAT------T--TATACATGCATGTATTATATGGGTA-----GATAT-T---TTGTTTTTA-T-TATT--TTCTATTT--ATtt
gi|5 : TTTTGTGACGTCACGTCATGGTAACCAGGCCTTCGTTGAATT----TTTCAAAATATCGTACAAGTA------TGTCTGTTT-TCAGATTGTTGC-AGAAA----CTTTA---AATTTCGGATGAAACATATGAGATTGATAA-TCATCTCTGAGTTTAACCATGCCAGAGAAGAGG-----------GA-------AATCAGACC-AGA-TAGAATC-GCGGAGGGGG-T-AGAA-----------ATCTGGTC-TTT------T--TATA-------------------T
gi|6 : TGAGAAGAAAAA-TCATTATTGAGGTTAACCGTGCCGGTGAAAAGGTTTGTTTCGGCACATTTGATAATAAAATC-GGGTCCGAATC-GAGGAGGGGG-TCAGAATGTCGTTGCACACCTGGTG-TGTTGTATAT--TATA-------------------TA-----GATAT-A---T--TTTTTC-T-T-TT--TCCTA-TT--ATAT------CTATTTATCGATTAAAATTCA-GATACCTGT-GG
gi|7 : TGGCAGTGAAAAGGTTTGTTTCGACAAATTTGATAATAAAATC-GGGTCCGAATCGGAGGAAAGGG-TCAGAATGTCGTTGCACACCT-GTGTTAT------TAATTTA-------------------TA-----GATAT-TGGGTTATTT------------TTCTATTT--A-----------------TGATTAAAATTCAGGATACCTGT-GGt
gi|8 : cTTTCGTGACGTCATGTAATGGTGGTCA-GCCTTGGAAGGAAT----GTAC-AAATATCGTAAAATTA------TGTCCGTTGTTTAGATTATTAAGAGTGC----CTTTAG--GAATTCTGAAtt
gi|9 : tTTTCGTGACGTCATGTAATGGTGGTCAGGCCTTGGAGG--AT----GTAC-AAATATCGTAAAATTA------TGT-CGTTG-TTAGATTATTAAGAGTGC----CTTTA---GAATTCTGA
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|14 ): AGGCAAAGCAAAAAGTATTGTTTGTTAAAATTTATATCCATTTGCCACACTAAAATAAAAGAAATAAAA