lowQualScore : 1111111111111111111111111111111111111111111111
lowQualScore : 1 11 1 1 55555555555555555 1111111 33333333333 44444444444444444 111 7777777777777777777777777777777777777777777777777777777777777 1111111111 11111111 111111 2222222 111 11111 22222222 1111 1111111111 777777777777777777777 22 2222222 1 22 1111 1111111 1111111111111111111111111111111111111111111111 11111111 111111111 11 1111111111
lowQualScore : 5 5 888 888 66 4 55 44 3 99999 0 4 0 5 4 5 66 0 0 5 777 555 55555555555555555 8888888 77 1 888 5 22222222222 5 444 1 33333333333333333 5 77 5 77 000 5 77 4444444444444444444444444444444444444444444444444444444444444 1111111111 66 88888888 5 888888 5 6666666 5 888 22222 66 22222222 66 1 0000 66 66 4444444444 333333333333333333333 00 3 5 4444444 5 2 55 1 66 1 00 5 5 66 5 2222 5 11 5 0 8888888 4444444444444444444444444444444444444444444444 66666666 0 777777777 777 4 2 5 11 66 1 2 2 2 3 2 8 9 2 5 7777777777 5 0
lowQualScore : . . ... ... .. . .. .. . ..... . . . . . . .. . . . ... ... ................. ....... .. . ... . ........... . ... . ................. . .. . .. ... . .. ............................................................. .......... .. ........ . ...... . ....... . ... ..... .. ........ .. . .... .. .. .......... ..................... .. . . ....... . . .. . .. . .. . . .. . .... . .. . . ....... .............................................. ........ . ......... ... . . . .. .. . . . . . . . . . . .......... . .
lowQualScore : 0 0 888 888 99 1 88 88 6 11111 5 4 1 0 4 0 99 4 1 0 555 999 44444444444444444 1111111 99 7 666 7 00000000000 7 777 4 44444444444444444 7 99 7 99 000 7 99 2222222222222222222222222222222222222222222222222222222222222 5555555555 99 11111111 0 999999 0 9999999 0 888 55555 99 00000000 99 4 6666 99 99 8888888888 000000000000000000000 99 6 7 3333333 7 9 44 4 44 7 77 0 1 11 7 1111 0 11 0 4 4444444 2222222222222222222222222222222222222222222222 11111111 1 888888888 000 4 9 7 88 88 2 9 9 7 1 6 7 0 2 0 6666666666 7 7
consensus : TAGACTGGATTGC-CTG---CCCTTGATT---CCA--GACGCTCCGCTAGG-AATTTCAA-GGACAG-----GTAACCACCACCGCCATGACAGTA-GGAAAACCTACT-GCAGTTTCGCGCAT-AGCAAGTGCG-CAT--CCTAAAAATAAACTGAANCTTTGGCTT-GAAATAG-GCGG-A-TCAAAGAATGTATAC-AA--GCCAT------GTTA--TCATAATA-C-CAT-TAT--TAC-AG-GACAT-TGCACTAGT------A--CA----C-TAAC-TGCAT--ATT-AAATTG--ACTG---AAC-ATTC--TAAAACAC-G------------T-------C-T-ATGTACA-----------CT---------------GA----TG----AC--ATGTTTTA--------C-TTG-----GAAAT-AAA-------CG-A---CTGCA-----T--TGTGCTCTG-------TAC--TCAGGCGCC----TTATCA--GGTCAG--CT-TG-TC-AG-CTG------------A-------ATCCAAG-CAATTTAA-ATT-------GA-TTTAAATAATG-CTGAAGTCGAACATCGAACTTCTATAGCTCANACG-CC----ACTGAGGA-TAACACC-TTTCTAAN------TATAG----A-------------T-------------C-------------TAT--------TGCC---------CGT-GACG-CGAAA-CATGGC--TG--GTGGTTACC-TGT-CGTTG-AT-TTAGCGTGGCGC-C----T-T---AT-CATCGACAGCGTACCAGTC
Reference ( gi|5 ) : TAGACTGGCTTGC-CTG---CCCTTGATT---CCA--AACACTCCGCTAGT-AATTTCAA-GGACAG-----GTAACCACCACCGCCATGACAGTA-GGAAAACCTACT-GCAGTTTCGCGCAT-AGCAAGTGCG-CAT--CCTAAAAATAAACTGAATCTTTGGCTT-GAAATGG-GCGG-A-TCAAAGAATGTATAC-AA--TCCAT------GTTA--TCATAATA-C-CAT-TATA-TAC-AGTGACAT-TGCACCAGT------T--CA----C-TAAC-TGCAT--ATT-AAATTG--ACTG---AAC-ATTC--TAAAACAC-G------------T-------C-T-ATGTACA-----------CT---------------GA----TG----AC--ATGTTTTA--------C-TTG-----GAAAT-AAA-------CG-A---CTGCA-----T--TGTGCTCTA-------TAC--TCAGGCGCC----TTATCA--GGTCAG--CT-TG-TC-AG-CTG------------A-------ATCCAAT-CAATTTAA-ATT-------GA-TATAAATAATG-CTGAAGTCGAACATCGAACTTTTATAGCTCAAACG-CC----ACTGAGGA-TAACACC-TTTCTAAT------TATAG----A-------------T-------------C-------------TAT--------TGCC---------CGT-GGCG-CGAAA-CATAGC--TG--GTGGTTACC-TGT-CGTTG-AT-TTAACTTGTCAC-C----T-T---AT-CATCGACAGCGTACCAGTC
gi|6 : TAGGCTGGATTGC-CTG---CCCTTGATT---CCA--AATGCTCCGCTAGG-AATTTCAA-GGACAG-----GTAACCACCGCCGCCATGACAGTA-GGAAAACCTACT-GCAGTTTCGCGCAT-AGGAAGTGCG-CAT--CCTAAAAGTAACCTGAATCTTTGGCTT-GAAAT---------------GAATGTATAC-AA--ACCAT------GTTA--TCATAATA-C-CAT-TATG-TAC-AGAGACAT-TGCACTAGT------A--TA----C-TAAC-TGCAT--ATT-AAATTG--ACTG---AAC-ATTC--TAAAACAC-G------------T-------C-T-ATGTACA-----------CT---------------GA----TG----AC--ATGCTTTA--------C-TTA-----GAAAT-AAACGAT---CG-A---CTGTA-----T--TGTGC------------AC--TCAGGCGCC----TTATCA--GGTCAG--CTGTA-TT----CT-------------A-------ATCCAAG-CAATTTAA-ATT-------GA-TTTATATAATG-CTGAAGTCGAGCACTGA------------------------------GGA-TAACACC-TTTCTAATTTTTAATATAG----A-------------T-------------CATCT---------CATCACTTAGATGCC---------CGT-GACG-CGAAA-CATGGC--TG--GTGGTTACC-TGT-CGTTG-AT-TAAGCGTGGCGC-C----T-T---AT-CATCGACAGCGTACCAGT
gi|4 : AGGCCGGATTGC-CTG---CCCTTGATT---CCA--GACGCTCCGCTAGT-AAATTCAA-GGACAG-----GTAACAACCACCGCCATGACAGTA-GGAAAACCTACT-GCAGTTTCGCGCAT-AGCAAGTGCG-CAT--CCTAAAAATAAACTGAAACTTTAGCTT-GAAATAG-GCGA-A-TCAAAGAAT-TGTTT-AA--GCCCC------ATTA--TCATATAA-C-CAT-TAT------------------ACTAGT------A--CA----C-TAAC-TGCAA--ATT-AAATTG--ACTG---AAC-ATTC--TAAAACAA-G------------GAGAGACAC-TAATCT-TA-----------CT---------------GA----TGGATTAC--ATGTTTTA--------T-TTG-----GAAAT-AGA-------TGTACCCCTCCG-----TTCTATTTTCTA-------TA---TTAG----C----CTATTA--AGGC----CT-TT-AT-AGTTTG------------A-------A---AATAAAACTTGG-ATTTTCTGCCAA-TATTAAT--TG--TGAACTTG-ACATCGACTTTCTATAGCTCACACG-CC----ACTGAGGA-T-ATA-G-TTTCTAAA------TATAG----ATCATCTCATCAATT-------------C-------------TAT--------TGCC---------CGT-GACG-CGAAA-CATGGC--TG--GTAGTTACC-TGT-CGTTG-A--TTAGCGTGTCGC-C----T-T---AT-CATAGACAGCGTACCAGTC
gi|3 : AGACTGGATTGC-CTG---CCCTTGATTCTCCCAACAACGCTCC-CTAGCGAATATCAA-GGACAGTACATGTAACCA-CACCGCCA-GACAGTAGGGAAAACCTACT-GCAG-TTCGCCCGC-AAGAAGTGCG-CATGCCCTAATAAT-AACTGAATCTTTGGCTTGGAAATGGAGCGGCA-TCAAA-AATGGATACAAA--ACCATTTGTTGGTTAATTCATAATA-C-CATATGTT-TACAAGTGACAT-T-CGCCACT------TAGTA----CATAAC-TGCCTGAATT-AAATTGACACTG---AACGATTCTTTAAAACAC-G------------T-------C-T-AT-TGAA-----------CT---------------GA-----G----AC--A-GTTTTA--------C-TTGT----GAAAT-AAA-------CG-AC--CTGCA-----T--TGGGCTCTA-------TACAATCAGG-GCC----TTATCA--GGTCAGACTT-TG-TCAAG-CTG------------A-------ATCCAAG-CAA--TAA-ATT-------GATTTTAAATAATGACTGAAGTCGAACATCGAA--TCTA-AGCTC-AACG-CC----AAT-AGG---AACACCTTTTCTAAT------TATAAGATTA-------------T-------------C-------------TCT--------CACTTTCTAGGTACGTAGACG-CGAAA-CATGTC--TG--GT-GTTACT-T-T-CGTTG-ATCTTAGGCGGGCGC-C----TATCTAAT-CATCGACAGC-TA-CAGT
gi|10 : GACTGGATT----TGGGTCCCTTG-TT---CCA--GACG-TCCGCTAGG-AAAT-CAATGGACAG-----GTAACCAC-ACCGCCATGAC-GTA-GGAAAACC-ACTGGCAGTTGCGTGCAT-GGCAAGTG-G-C-T--CCTAAA---AAACTGAA-CTTTAGCTT-CAAATAG-GCGG-A-TCACAGAATAT-TTT-AAGCGCCCT------ATTA--TCA-GATAGC-CAT-TA
gi|7 : acACTGGATTGCGCTG---CC-TTGATT---CCA--ACCACGCCGCTAG--AATTTCAA-GGACAG-----GTAACCACCACC---ATGACAGTA-GGAAAA-CTACT-GCAGTTTCGCGCATAAGCAAGTGCG-CAT--CCTAAAAATAAACTGAATCTTTGGCTT-GAAATGG-GCGG-A-TCAA--GATGTATAC-AA--CACAT------GTTA--TCATAA-A---CAT-CATATTAC-AGT-ACATCTGCACCAGT----------A----C-TAAC-TG-AT--ATT--AATTG--ACTG---AAC-ATTC---AAAACAC-G------------T---------T-ATGTA-A-----------CT---------------GA----TG----AC--ATGTTTTA--------C-TT------GAAAT-AAA-------CG-A---CTGCA-----T--TGTGCTAT--------TAC--TCAGGCGCC----TTATCA--GGTCAG--TC-TG-TC-AG-CTG--------------------ATGCAA--CAATTTAA-ATTA------GA-TATAAATAATG-CTGAAATCGAACATCGAA-TTTTATAGCTCAAACG-CC----ACTGAGGA-TAA-ACC-TTTC-AAT------TATAAT---C-------------T-------------C-------------TAT--------TGCC---------CGT--GCG-CGAAA-CATAGC--TG--GTGGTTACT---T-CGTTG-AT-TTAACTT-TCACTC----T-T---AT-CATCG-CAGCGTAC
gi|9 : ACTGTATTGC-CTG---CCCTTGATT---CCA--GACGCTCCGCTAGG-AAATTCAA-GGACAG-----GTAACCACCAACGTCATGACAGTA-GGAAAAC---CT-GCAAGTTCGCGCAT-AGCAAGTGCG-CAT--CCTAAATATAAACTGAAACTTTGGCTT-GAAATAG-GC
gi|15 : ACTGGATTGC-CTG---CCCTTGATT---CCA--GATGCTCCGCTAGG-AAATTCAA-GGACAG-----GTAACCACCACCGCCATGACAGTA-GGAAAACCTACT-GCAGTCTTGCGCAT-AGCAAGTGtcgacatgaataccaatataaatgcagaggagcagggtttgttgtttga
gi|16 : aACTGGATTGC-CTG---CCCTTGATT---CCA--AACGCTCCGCTAGG-AATTTC
gi|6 : CGCT--T-AAT--CAA-CGACAG-----GTAACCACCA--GCCATG
gi|12 : taggctggattgcctgcccttgattccaaatgctccgctaggaatttcaaggacaggtaaccaccgccgccatgacagtaggaaaacctactgcagtttcgcgcataggaagtgcgcatcctaaaagtaacctgaatctttggcttgaaatgaatgtatacaaaccatgttatcataataccattatgtacagagacattgcactagtatactaactgcatattaaattgactgaacattctaaaacacgtctatgtacactgatgacatgctttacttagaaataaacgatcgactgtattgtgcactcaggcgccttatcaggtcagctgtattctaatccaagcaatttaaattgatttatataatgctgaagtcgagcactgaggataacacctttctaatttttaatatagatcatctcatcacttagatgcccgtgacgcgaaaCGCTA---AAT--CAA-CGACAG-----GTAACCACCA--GCCATGtggcgccttatcatcgacagcgtaccagt
gi|4 : tgtgaacttgacatcgaccttctaaagctcacacgccactgatgatatagtttctaaatatagatcatctcatcacttctattgcctgtgacgcgaaaTCAA-CGACAG-----GTAACTACCA--GCCATGtaacatggaccattcc
gi|14 : aggccggattgcctgcccttgattccagacgctccgctagtaaattcaaggacaggtaacaaccaccgccatgacagtaggaaaacctactgcagtttcgcgcatagcaagtgcgcatcctaaaaataaactgaaactttagcttgaaataggcgaatcaaagaattgtttaagccccattatcatataaccattatactagtacactaactgcaaattaaattgactgaacattctaaaacaaggagagacactaatcttactgatggattacatgttttatttggaaatagatgtacccctccgttctattttctatattagcctattaaggcctttatagtttgaaaataaaacttggattttctgccaatattaattgtgaacttgacatcgactttctatagctcacacgccactgaggatatagtttctaaatatagatcatctcatcaattctattgcccgtgacgcgaaaTCAA-TCACAG-----GTAACCACCA--GCCATGATAGCA-ttagcgtgtcgccttatcatagacagcgtaccagtc
gi|1 : ctaaaaatagatggggtaatcccgttgcaatttcctgtgatgA-GGAAAACCTACT-GCAGTTTCGCGCAT-AGCAAGTGCGACAT--TCCTAAAATAACCGGAAACTTTAGCTT-GAAACTA-GCGG-ACTCAAA----------------CCAT------TTTA--TTATAATA-CGCCT-TACA-CGC----GCAAT-TGC-TTAGTACGTACT--CA------TAACATGCAT--ATTTAAATTG--CCTG---AAC-ATTC--TAAAACATAG------------T-------CAT-ATGTACACGAAATCTTACCT---------------GATGGGTG----AC--ATGTTTTA--------C-TTC-----AAAATAAAA-------CG-A---CTGCAATATTT--CGTGCTCTG-------TAC--T--GGCGCC----TTATCA--GGTCAG--CT-CGTTC-AG-CTGTCGCCTTGC---ATTTCCACATCCAAG-CAATTTAACATT-------GA-T---GATAATG-CCAAAGTCGAttagcatggtctgaatagcagctagggcacctgagtcta
gi|2 : actggTTTCGCGCAT-AGCAAGTGCG-CAT--CCTAAAAATAAACCGAAACTTTAGCTT-GAAATAG-GCGG-A-TCAAA----------------CCAT------TTTA--TCATAATA-C-CAC-TA-----C-AGCGACAT-TGAGCTAGT------A--CGTACTC-TAAC-TGCAT--ATT-AAATTG--ACTG---AAC-ATTC--TAAAACAC----------------------C-T-ATGTACA-----------CTATAATCTTACTGATGGA----TG----AC--ATGTTTTA--------C-TTG-----GAAAC-AAA-------CG-A---TTGCA-----T--TGTGCTCTG-------TAT--TCAGGCGCCTTAATTATCA--GGTCAG--CT-CG-TT-AG-CTGTAGCTGCATTCCA-------ATCCAAG-CAAGTTAA-ATT-------GA-TTT--ATAATG-C-AAAGTCGAttcaggttctgttttcattcttgaagagatttgaataaatgtcaaataaatagttcgaggactgattttgattagccgcgaatgggccactgacggttgatagattcaccggtaatatttcgtcatacagaaattgttagagaaataaaagatttactcctcctgtatgtatttcctatataacctagtttacttgaattttatctggcaattgattgtttaaacttaaatttccgacctaagtatatagttcacaggacctgtgactgaggaataacacctttcaaatatagagctcttctcatcacttctaattcctgcaacaattccctgtcgatgattaacgtggcgccccgattttgcatgacagcgtaccagtc
gi|11 : CAT-TATACTAGT------A--CA----C-TAAG-TGCAT--ATT-AAATTG--ACTGTTCAAC-ATTT--TAAAACAA-GGATAAACATTAAT-------C-T--TACGCA-----------TG---------------GA----TT----AC--ATGTTTTAAACGACTGCATTGTGCCAGAGAT-ATATATGTCTCG-AT--CTG-A-----T--TGTGCTCTGAGCTGTGTAC--TCAGGCGCC----TTATCACTGGTCAG--CT-TG--C-AG-gttcaggttttgtttcattcttgaagagattttgaataaatgaaaataaatagttcgagactgattttgattagccattaagtgggcctactgcggtttgagattcacggtatatttcgtctacagaaattattagaaatgaaaagatttactcctctgttgtatttcctatattaacctagtttagtttgaatataaacttgactttttctggcaattaatgcttaaaacttgacttcgacttagtacattgtatatatagctgaggatagcacctttctaaatatagataatctcatcacttctattgcccgtgacgcgcaacatggctggtgttaccttgttgttgatttagcgtggcac
gi|13 : T---------------GA----TG----ACCTATGTTTTA--------C-TTG-----GAAAT-AAA-------CG-A---CTGCA-----T--TGTGCTCTA-------TAC--TAAGGCGCC----TTATCA--GGTCAG--CTGTA-TT----CT-------------A-------ATCCAAG-CAATTTAA-ATT-------GA-TTTAAA-------TGAAGTCGAACATCAAACTTCTATAGCTCAAACG-CC----AC
gi|12 : TGAACTTGA-CATCGACCTTCTAAAGCTCACACG-CC----ACTGATGA-TA-TAG--TTTCTAAA------TATAG----A-------------T-------------CATCTCATCACTTCTAT--------TGCC---------TGT-GACG-CGAAA-CATGGC--TG--GTGGTTACC-TGT-CGTTG-AT-TTAGC
gi|1 : tgTATAGTTCACAGGACCTGTGACTGAGGAATAACACC-TTTCAAAT-------ATAG----A-------------G-------------C-------------TCT--------T-CT---------CAT-CACTTCTAA----TTCC--TGCAACAATTCCC-TGT-CGATG-AT-T-AACGTGGCGC-CCCGAT-T---TTGCAT-GACAGCGTACCAGTCgtaacatggaccattcc
gi|2 : actggaggaaaacctactgcagtttcgcgcatagcaagtgcgacattcctaaaataaccggaaactttagcttgaaactagcggactcaaaccattttattataatacgccttacacgcgcaattgcttagtacgtactcataacatgcatatttaaattgcctgaacattctaaaacatagtcatatgtacacgaaatcttacctgatgggtgacatgttttacttcaaaataaaacgactgcaatatttcgtgctctgtactggcgccttatcaggtcagctcgttcagctgtcgccttgcatttccacatccaagcaatttaacattgatgataatgccaaagtcgattcaggttctgttttcattcttgaagagatttgaataaatgtcaaataaatagttcgaggactgattttgattagccgcgaatgggccactgacggttgatagattcaccggtaatatttcgtcatacagaaattgttagagaaataaaagatttactcctcctgtatgtatttcctatataacctagtttacttgaattttatctggcaattgattgtttaaacttaaatttccgacctaagtaCTGAGGA-TAGCACC-TTTCTAAA------TATAG----A-------------TAATCTCATCACTTC-------------TAT--------TGCC---------CGT-GACG-CGCAA-CATGGC--TG--GT-GTTACCTTGT-TGTTG-AT-TTAGCGTGGCAC-
gi|8 : tttcgcgcatagcaagtgcgcatcctaaaaataaaccgaaactttagcttgaaataggcggatcaaaccattttatcataataccactacagcgacattgagctagtacgtactctaactgcatattaaattgactgaacattctaaaacacctatgtacactataatcttactgatggatgacatgttttacttggaaacaaacgattgcattgtgctctgtattcaggcgccttaattatcaggtcagctcgttagctgtagctgcattccaatccaagcaagttaaattgatttataatgcaaagtcgagttcaggttttgtttcattcttgaagagattttgaataaatgaaaataaatagttcgagactgattttgattagccattaagtgggcctactgcggtttgagattcacggtatatttcgtctacagaaattattagaaatgaaaagatttactcctctgttgtatttcctatattaacctagtttagtttgaatataaacttgactttttctggcaattaatgcttaaaacttgacttcgacttagtacattgtatatatagCTGAGGA-TAGCACC-TTTCTAAA------TATAG----A-------------TAATCTCATCACTTC-------------TAT--------TGCC---------CGT-GACG-CGCAA-CATGGC--TG--GTGGTTACC-TGT-TGTTA-AT-CTATCGTGGCGC-C----C-G---AT-CATCGACAGCGTACCGG
gi|14 : taatgcaaaatcgagttaagttttttttttcattcttgaagatattctgataaatgaaaataaatagttcaagactgattttgattagccgttaagtgagcctactgcggttgtagattcacggtatatttcgtctacagaaattgttagaaatgaaaagatttactcctctgttgtatttcctatatattaacctagtttagtttgaatataatacttgaatttttctggcaattaattgcttaaaacttgacttcgacttagtacattgtatatatagAT--------TTCC---------TGT-GATG-TGCTATCATGGC--TG--GTGGTTACC-TGT-GATTG-AT-T
gi|7 : ctaaaaatagatggggtaatcccgttgca-CATGG---TG--GTGGTTACC-TGT-CCTTG-Aagcatggtctgaatagcagctagggcacctgagtcta
gi|6 : actggattgcgctgccttgattccaaccacgccgctagaatt-CATGGCGGCG--GTGGTTACC-TGT-CCTTG-Aacagtaggaaaactactgcagtttcgcgcataagcaagtgcgcatcctaaaaataaactgaatctttggcttgaaatgggcggatcaagatgtatacaacacatgttatcataaacatcatattacagtacatctgcaccagtactaactgatattaattgactgaacattcaaaacacgttatgtaactgatgacatgttttacttgaaataaacgactgcattgtgctattactcaggcgccttatcaggtcagtctgtcagctgatgcaacaatttaaattagatataaataatgctgaaatcgaacatcgaattttatagctcaaacgccactgaggataaacctttcaattataatctctattgcccgtgcgcgaaacatagctggtggttacttcgttgatttaactttcactcttatcatcgcagcgtac
gi|4 : taggctggattgcctgcccttgattccaaatgctccgctaggaatt-CATGGCGGTG--GTTGTTACC-TGT-CCTTG-AA-TTTACTacagtaggaaaacctactgcagtttcgcgcataggaagtgcgcatcctaaaagtaacctgaatctttggcttgaaatgaatgtatacaaaccatgttatcataataccattatgtacagagacattgcactagtatactaactgcatattaaattgactgaacattctaaaacacgtctatgtacactgatgacatgctttacttagaaataaacgatcgactgtattgtgcactcaggcgccttatcaggtcagctgtattctaatccaagcaatttaaattgatttatataatgctgaagtcgagcactgaggataacacctttctaatttttaatatagatcatctcatcacttagatgcccgtgacgcgaaacatggctggtggttacctgtcgttgattaagcgtggcgccttatcatcgacagcgtaccagt
gi|15 : aggccggattgcctgcccttgattccagacgctccgct-CATGGCGGTG--GTGGTTACC-TGT-CCTTGAAT-TTacagtaggaaaacctactgcagtttcgcgcatagcaagtgcgcatcctaaaaataaactgaaactttagcttgaaataggcgaatcaaagaattgtttaagccccattatcatataaccattatactagtacactaactgcaaattaaattgactgaacattctaaaacaaggagagacactaatcttactgatggattacatgttttatttggaaatagatgtacccctccgttctattttctatattagcctattaaggcctttatagtttgaaaataaaacttggattttctgccaatattaattgtgaacttgacatcgactttctatagctcacacgccactgaggatatagtttctaaatatagatcatctcatcaattctattgcccgtgacgcgaaacatggctggtagttacctgtcgttgattagcgtgtcgccttatcatagacagcgtaccagtc
gi|10 : aactggattgcctgcccttgattccagatgctccgctagg-CATGGC--GGT-GTGGTTACC-TGTCCATTG-AT-TTacagtaggaaaacctactgcagtcttgcgcatagcaagtg
gi|17 : acgactggatttgggtcccttgttccagacgtccgctaggTG-AT-TTAGCGTGGCGC-C----C-T---AT-CATCGACAGAGTACCAGTacgtaggaaaaccactggcagttgcgtgcatggcaagtggctcctaaaaaactgaactttagcttcaaataggcggatcacagaatattttaagcgccctattatcagatagccatta
Alignments
lowQualScore : 11111 22222222222222222 1111111 3333333333 1111 5555555555555555555555555555555555555555555555555555555555555 11111111 111111 2222222 111 11111 11111111 666666666666666666666 11 1111 111111 9999999999999999999999999999999999999999999999 11111111 111111111 1111111111
lowQualScore : 4 777 777 66 55 2 5 22222 4 4 4 4 66 5 4 4 4 5 5 77777777777777777 4444444 66 5 5 5 5 7777777777 5 555 5 0 66 0000 888 5 66 5 66 888 5 66 0000000000000000000000000000000000000000000000000000000000000 9999 9999 66 66666666 4 555555 4 3333333 4 666 11111 66 99999999 66 0 9999 66 66 8 77777 4 111111111111111111111 5 2 5 5 5 5 888 888 5 0 11 3 7 5 0000 4 4 1 222222 1 8888888888888888888888888888888888888888888888 44444444 666666666 4 4 4 55 3 4 3 3 4 3333333333 5
lowQualScore : . ... ... .. .. . . ..... . . . . .. . . . . . . ................. ....... .. . . . . .......... . ... . . .. .... ... . .. . .. ... . .. ............................................................. .... .... .. ........ . ...... . ....... . ... ..... .. ........ .. . .... .. .. . ..... . ..................... . . . . . . ... ... . . .. . . . .... . . . ...... . .............................................. ........ ......... . . . .. . . . . . .......... .
lowQualScore : 4 888 888 11 66 6 0 55555 4 4 0 4 11 3 4 3 4 0 0 55555555555555555 6666666 99 0 0 0 0 4444444444 0 111 0 4 99 6666 888 0 99 0 99 888 0 99 2222222222222222222222222222222222222222222222222222222222222 4444 4444 11 11111111 4 777777 4 9999999 4 777 11111 11 99999999 11 1 4444 11 11 9 22222 4 555555555555555555555 6 0 0 0 0 5 999 888 0 1 44 4 6 0 6666 4 4 9 888888 0 4444444444444444444444444444444444444444444444 55555555 000000000 0 0 0 55 2 0 6 6 4 1111111111 0
consensus : TAGACTGGATTGC-CTG---CCCTTGATT---CCA--GACGCTCCGCTAG-GAANTTCAA-GGACAG-----GTAACCACCACCGCCATGACAGTA-GGAAAACCTACTG-CAGTTTCGCGCAT-AGCAAGTGCG-CAT--CCTAAAAATAAACTGAANCTTTGGCTT-GAAATGG-GCGG-A-TCAAAGAATGTATAC-AA--NCCAT------GTTA--TCAT-AATA-C-CAT-TA-T-TACAG--GACAT-T-G-CAC-TAGTAC--A----CT---AAC-TGCAT--ATT-AAATTG--ACTG---AAC-ATTC--TAAAACAC-G------------T-------C-T-ATGTACA-----------CT---------------GA----TG----AC--ATGTTTTA--------C-TTG-----GAAAT-AAA-------CG-A---CTGCA-----T--TGTGCTCTG-------TAC--TCAGGCGCC----TTATCA--GGTCAG--CT-TG-TC-AG-CTG------------A-------ATCCAAGCAATTTAA-ATT-GA-TTTA--AA---TAATG-CTGAAGTCGAACATCGAACTTCTATAGCTCANACG-CC----ACTGAGGA-TAACACC-TTTCTA------AATATAG----A-------------T-------------C-------------TAT--------TGCC---------CGT-GACG-CGAAA-CATGGCTG--GTGGTTACC-TGTCGTTGAT-TTA-GCGTGGCGC-C----T-T---AT-CATCGACAGCGTACCAGTC
Reference ( family-1178 ) : TAGACTGGATTGC-CTG---CCCTTGATT---CCA--GACGCTCCGCTAG-GAATTTCAA-GGACAG-----GTAACCACCACCGCCATGACAGTA-GGAAAACCTACTG-CAGTTTCGCGCAT-AGCAAGTGCG-CAT--CCTAAAAATAAACTGAANCTTTGGCTT-GAAATAG-GCGG-A-TCAAAGAATGTATAC-AA--GCCAT------GTTA--TCAT-AATA-C-CAT-TA-T-TACAG--GACAT-T-G-CAC-TAGTAC--A----CT---AAC-TGCAT--ATT-AAATTG--ACTG---AAC-ATTC--TAAAACAC-G------------T-------C-T-ATGTACA-----------CT---------------GA----TG----AC--ATGTTTTA--------C-TTG-----GAAAT-AAA-------CG-A---CTGCA-----T--TGTGCTCTG-------TAC--TCAGGCGCC----TTATCA--GGTCAG--CT-TG-TC-AG-CTG------------A-------ATCCAAGCAATTTAA-ATT-GA-TTTA--AA---TAATG-CTGAAGTCGAACATCGAACTTCTATAGCTCANACG-CC----ACTGAGGA-TAACACC-TTTCTA------ANTATAG----A-------------T-------------C-------------TAT--------TGCC---------CGT-GACG-CGAAA-CATGGCTG--GTGGTTACC-TGTCGTTGAT-TTA-GCGTGGCGC-C----T-T---AT-CATCGACAGCGTACCAGTC
gi|1 : A-GGAAAACCTACTG-CAGTTTCGCGCAT-AGCAAGTGCGACAT--TCCTAAAATAACCGGAAACTTTAGCTT-GAAACTA-GCGG-ACTCAAA----------------CCAT------TTTA--TTAT-AATA-CGCCT-TA-C--ACGC--GCAAT-T-G-C-T-TAGTACGTA----CTCATAACATGCAT--ATTTAAATTG--CCTG---AAC-ATTC--TAAAACATAG------------T-------CAT-ATGTACACGAAATCTTACCT---------------GATGGGTG----AC--ATGTTTTA--------C-TTC-----AAAATAAAA-------CG-A---CTGCAATATTT--CGTGCTCTG-------TAC--T--GGCGCC----TTATCA--GGTCAG--CT-CGTTC-AG-CTGTCGCCTTGC---ATTTCCACATCCAAGCAATTTAACATT-GA-T-----GA---TAATG-CCAAAGTCGA
gi|1 : actggTATAGTTCACAGGACCTGTGACTGAGGAATAACACC-TTTC-A------AATATAG----A-------------G-------------C-------------TCT--------T-CT---------CAT-CACTTCTAA----TTCCTGCAACAATTCCC-TGTCGATGAT-T-A-ACGTGGCGC-CCCGAT-T---TTGCAT-GACAGCGTACCAGTCttcaggttctgttttcattcttgaagagatttgaataaatgtcaaataaatagttcgaggactgattttgattagccgcgaatgggccactgacggttgatagattcaccggtaatatttcgtcatacagaaattgttagagaaataaaagatttactcctcctgtatgtatttcctatataacctagtttacttgaattttatctggcaattgattgtttaaacttaaatttccgacctaagtatatagttcacaggacctgtgactgaggaataacacctttcaaatatagagctcttctcatcacttctaattcctgcaacaattccctgtcgatgattaacgtggcgccccgattttgcatgacagcgtaccagtc
gi|10 : actggaggaaaacctactgcagtttcgcgcatagcaagtgcgacattcctaaaataaccggaaactttagcttgaaactagcggactcaaaccattttattataatacgccttacacgcgcaattgcttagtacgtactcataacatgcatatttaaattgcctgaacattctaaaacatagtcatatgtacacgaaatcttacctgatgggtgacatgttttacttcaaaataaaacgactgcaatatttcgtgctctgtactggcgccttatcaggtcagctcgttcagctgtcgccttgcatttccacatccaagcaatttaacattgatgataatgccaaagtcgattcaggttctgttttcattcttgaagagatttgaataaatgtcaaataaatagttcgaggactgattttgattagccgcgaatgggccactgacggttgatagattcaccggtaatatttcgtcatacagaaattgttagagaaataaaagatttactcctcctgtatgtatttcctatataacctagtttacttgaattttatctggcaattgattgtttaaacttaaatttccgacctaagtaGACTGGATT----TGGGTCCCTTG-TT---CCA--GACG-TCCGCTAG-GAAAT-CAATGGACAG-----GTAACCAC-ACCGCCATGAC-GTA-GGAAAACC-ACTGGCAGTTGCGTGCAT-GGCAAGTG-G-C-T--CCTAAAAA---ACTGAA-CTTTAGCTT-CAAATAG-GCGG-A-TCACAGAATAT-TTT-AAGCGCCCT------ATTA--TCA--GATAGC-CAT-TA-
gi|11 : acCAT-T-A-TAC-TAGTAC--A----CT---AAG-TGCAT--ATT-AAATTG--ACTGTTCAAC-ATTT--TAAAACAA-GGATAAACATTAAT-------C-T--TACGCA-----------TG---------------GA----TT----AC--ATGTTTTAAACGACTGCATTGTGCCAGAGAT-ATATATGTCTCG-AT--CTG-A-----T--TGTGCTCTGAGCTGTGTAC--TCAGGCGCC----TTATCACTGGTCAG--CT-TG--C-AG-
gi|12 : TGAACTTGA-CATCGACCTTCTAAAGCTCACACG-CC----ACTGATGA-TA-TAG--TTTCTA------AATATAG----A-------------T-------------CATCTCATCACTTCTAT--------TGCC---------TGT-GACG-CGAAA-CATGGCTG--GTGGTTACC-TGTCGTTGAT-TTA-GCGT
gi|13 : tgT---------------GA----TG----ACCTATGTTTTA--------C-TTG-----GAAAT-AAA-------CG-A---CTGCA-----T--TGTGCTCTA-------TAC--TAAGGCGCC----TTATCA--GGTCAG--CTGTA-TT----CT-------------A-------ATCCAAGCAATTTAA-ATT-GA-TTTA--AA----------TGAAGTCGAACATCAAACTTCTATAGCTCAAACG-CC----ACaacatggaccattcc
gi|14 : AT--------TTCC---------TGT-GATG-TGCTATCATGGCTG--GTGGTTACC-TGTGATTGA--TTA-GCATGG
gi|15 : ctaaaaatagatggggtaatcccgttgcaACTGGATTGC-CTG---CCCTTGATT---CCA--GATGCTCCGCTAG-GAAATTCAA-GGACAG-----GTAACCACCACCGCCATGACAGTA-GGAAAACCTACTG-CAGTCTTGCGCAT-AGCAAGTGtctgaatagcagctagggcacctgagtcta
gi|16 : aACTGGATTGC-CTG---CCCTTGATT---CCA--AACGCTCCGCTAG-GAATTTC
gi|17 : TGAT-TTA-GCGTGGCGC-C----C-T---AT-CATCGACAGAGTACCAGT
gi|2 : TTTCGCGCAT-AGCAAGTGCG-CAT--CCTAAAAATAAACCGAAACTTTAGCTT-GAAATAG-GCGG-A-TCAAA----------------CCAT------TTTA--TCAT-AATA-C-CAC-TA-----CAGC-GACAT-T-G-AGC-TAGTAC--GTACTCT---AAC-TGCAT--ATT-AAATTG--ACTG---AAC-ATTC--TAAAACAC----------------------C-T-ATGTACA-----------CTATAATCTTACTGATGGA----TG----AC--ATGTTTTA--------C-TTG-----GAAAC-AAA-------CG-A---TTGCA-----T--TGTGCTCTG-------TAT--TCAGGCGCCTTAATTATCA--GGTCAG--CT-CG-TT-AG-CTGTAGCTGCATTCCA-------ATCCAAGCAAGTTAA-ATT-GA-TTT----A---TAATG-C-AAAGTCGAa
gi|2 : CTGAGGA-TAGCACC-TTTCTA------AATATAG----A-------------TAATCTCATCACTTC-------------TAT--------TGCC---------CGT-GACG-CGCAA-CATGGCTG--GT-GTTACCTTGTTGTTGAT-TTA-GCGTGGCAC-gttcaggttttgtttcattcttgaagagattttgaataaatgaaaataaatagttcgagactgattttgattagccattaagtgggcctactgcggtttgagattcacggtatatttcgtctacagaaattattagaaatgaaaagatttactcctctgttgtatttcctatattaacctagtttagtttgaatataaacttgactttttctggcaattaatgcttaaaacttgacttcgacttagtacattgtatatatagctgaggatagcacctttctaaatatagataatctcatcacttctattgcccgtgacgcgcaacatggctggtgttaccttgttgttgatttagcgtggcac
gi|3 : tttcgcgcatagcaagtgcgcatcctaaaaataaaccgaaactttagcttgaaataggcggatcaaaccattttatcataataccactacagcgacattgagctagtacgtactctaactgcatattaaattgactgaacattctaaaacacctatgtacactataatcttactgatggatgacatgttttacttggaaacaaacgattgcattgtgctctgtattcaggcgccttaattatcaggtcagctcgttagctgtagctgcattccaatccaagcaagttaaattgatttataatgcaaagtcgagttcaggttttgtttcattcttgaagagattttgaataaatgaaaataaatagttcgagactgattttgattagccattaagtgggcctactgcggtttgagattcacggtatatttcgtctacagaaattattagaaatgaaaagatttactcctctgttgtatttcctatattaacctagtttagtttgaatataaacttgactttttctggcaattaatgcttaaaacttgacttcgacttagtacattgtatatatagAGACTGGATTGC-CTG---CCCTTGATTCTCCCAACAACGCTCC-CTAGCGAATATCAA-GGACAGTACATGTAACCA-CACCGCCA-GACAGTAGGGAAAACCTACTG-CAG-TTCGCCCGC-AAGAAGTGCG-CATGCCCTAATAAT-AACTGAATCTTTGGCTTGGAAATGGAGCGGCA-TCAAA-AATGGATACAAA--ACCATTTGTTGGTTAATTCAT-AATA-C-CATATGTT-TACAAGTGACAT-TCGCCACTTAGTAC--A-----T---AAC-TGCCTGAATT-AAATTGACACTG---AACGATTCTTTAAAACAC-G------------T-------C-T-AT-TGAA-----------CT---------------GA-----G----AC--A-GTTTTA--------C-TTGT----GAAAT-AAA-------CG-AC--CTGCA-----T--TGGGCTCTA-------TACAATCAGG-GCC----TTATCA--GGTCAGACTT-TG-TCAAG-CTG------------A-------ATCCAAGCAA--TAA-ATT-GATTTTA--AA---TAATGACTGAAGTCGAACATCGAA--TCTA-AGCTCA-ACG-CC----AAT-AGG---AACACCTTTTCTA------ATTATAAGATTA-------------T-------------C-------------TCT--------CACTTTCTAGGTACGTAGACG-CGAAA-CATGTCTG--GT-GTTACT-T-TCGTTGATCTTAGGCG-GGCGC-C----TATCTAAT-CATCGACAGC-TA-CAGT
gi|4 : AGGCCGGATTGC-CTG---CCCTTGATT---CCA--GACGCTCCGCTAG-TAAATTCAA-GGACAG-----GTAACAACCACCGCCATGACAGTA-GGAAAACCTACTG-CAGTTTCGCGCAT-AGCAAGTGCG-CAT--CCTAAAAATAAACTGAAACTTTAGCTT-GAAATAG-GCGA-A-TCAAAGAAT-TGTTT-AA--GCCCC------ATTA--TCAT-ATAA-C-CAT-TA-T-------------------AC-TAGTAC--A----CT---AAC-TGCAA--ATT-AAATTG--ACTG---AAC-ATTC--TAAAACAA-G------------GAGAGACAC-TAATCT-TA-----------CT---------------GA----TGGATTAC--ATGTTTTA--------T-TTG-----GAAAT-AGA-------TGTACCCCTCCG-----TTCTATTTTCTA-------TA---TTAG----C----CTATTA--AGGC----CT-TT-AT-AGTTTG------------A-------AAATAA--AACTTGG-ATT-T--TCTGCCAATATTAATT-GTGAACTTG-ACATCGACTTTCTATAGCTCACACG-CC----ACTGAGGA-T-ATA-G-TTTCTA------AATATAG----ATCATCTCATCAATT-------------C-------------TAT--------TGCC---------CGT-GACG-CGAAA-CATGGCTG--GTAGTTACC-TGTCGTTGA--TTA-GCGTGTCGC-C----T-T---AT-CATAGACAGCGTACCAGTC
gi|5 : TAGACTGGCTTGC-CTG---CCCTTGATT---CCA--AACACTCCGCTAG-TAATTTCAA-GGACAG-----GTAACCACCACCGCCATGACAGTA-GGAAAACCTACTG-CAGTTTCGCGCAT-AGCAAGTGCG-CAT--CCTAAAAATAAACTGAATCTTTGGCTT-GAAATGG-GCGG-A-TCAAAGAATGTATAC-AA--TCCAT------GTTA--TCAT-AATA-C-CAT-TA-TATACAGT-GACAT-T-G-CAC-CAGTTC--A----CT---AAC-TGCAT--ATT-AAATTG--ACTG---AAC-ATTC--TAAAACAC-G------------T-------C-T-ATGTACA-----------CT---------------GA----TG----AC--ATGTTTTA--------C-TTG-----GAAAT-AAA-------CG-A---CTGCA-----T--TGTGCTCTA-------TAC--TCAGGCGCC----TTATCA--GGTCAG--CT-TG-TC-AG-CTG------------A-------ATCCAATCAATTTAA-ATT-GA-TATA--AA---TAATG-CTGAAGTCGAACATCGAACTTTTATAGCTCAAACG-CC----ACTGAGGA-TAACACC-TTTCTA------ATTATAG----A-------------T-------------C-------------TAT--------TGCC---------CGT-GGCG-CGAAA-CATAGCTG--GTGGTTACC-TGTCGTTGAT-TTA-ACTTGTCAC-C----T-T---AT-CATCGACAGCGTACCAGTC
gi|6 : TAGGCTGGATTGC-CTG---CCCTTGATT---CCA--AATGCTCCGCTAG-GAATTTCAA-GGACAG-----GTAACCACCGCCGCCATGACAGTA-GGAAAACCTACTG-CAGTTTCGCGCAT-AGGAAGTGCG-CAT--CCTAAAAGTAACCTGAATCTTTGGCTT-GAAAT---------------GAATGTATAC-AA--ACCAT------GTTA--TCAT-AATA-C-CAT-TA-TGTACAGA-GACAT-T-G-CAC-TAGTAT--A----CT---AAC-TGCAT--ATT-AAATTG--ACTG---AAC-ATTC--TAAAACAC-G------------T-------C-T-ATGTACA-----------CT---------------GA----TG----AC--ATGCTTTA--------C-TTA-----GAAAT-AAACGAT---CG-A---CTGTA-----T--TGTGC------------AC--TCAGGCGCC----TTATCA--GGTCAG--CTGTA-TT----CT-------------A-------ATCCAAGCAATTTAA-ATT-GA-TTTA--TA---TAATG-CTGAAGTCGAGC------------------------------ACTGAGGA-TAACACC-TTTCTAATTTTTAATATAG----A-------------T-------------CATCT---------CATCACTTAGATGCC---------CGT-GACG-CGAAA-CATGGCTG--GTGGTTACC-TGTCGTTGAT-TAA-GCGTGGCGC-C----T-T---AT-CATCGACAGCGTACCAGT
gi|7 : ACTGGATTGCGCTG---CC-TTGATT---CCA--ACCACGCCGCTAG--AATTTCAA-GGACAG-----GTAACCACCACC---ATGACAGTA-GGAAAA-CTACTG-CAGTTTCGCGCATAAGCAAGTGCG-CAT--CCTAAAAATAAACTGAATCTTTGGCTT-GAAATGG-GCGG-A-TCAA--GATGTATAC-AA--CACAT------GTTA--TCATAAACA-T-CA--TA-T-TACAG--TACATCT-G-CAC-CAGT----A----CT---AAC-TG-AT--ATT--AATTG--ACTG---AAC-ATTC---AAAACAC-G------------T---------T-ATGTA-A-----------CT---------------GA----TG----AC--ATGTTTTA--------C-TT------GAAAT-AAA-------CG-A---CTGCA-----T--TGTGCTAT--------TAC--TCAGGCGCC----TTATCA--GGTCAG--TC-TG-TC-AG-CTG--------------------ATGCAA-CAATTTAA-ATTAGA-TATA--AA---TAATG-CTGAAATCGAACATCGAA-TTTTATAGCTCAAACG-CC----ACTGAGGA-TAA-ACC-TTTC-A------ATTATAAT---C-------------T-------------C-------------TAT--------TGCC---------CGT-G-CG-CGAAA-CATAGCTG--GTGGTTACT---TCGTTGAT-TTA-AC-TTTCACTC----T-T---AT-CATCG-CAGCGTAC
gi|8 : CTGAGGA-TAGCACC-TTTCTA------AATATAG----A-------------TAATCTCATCACTTC-------------TAT--------TGCC---------CGT-GACG-CGCAA-CATGGCTG--GTGGTTACC-TGTTGTTAAT-CTA-TCGTGGCGC-C----C-G---AT-CATCGACAGCGTACCGG
gi|9 : taatgcaaaatcgagttaagttttttttttcattcttgaagatattctgataaatgaaaataaatagttcaagactgattttgattagccgttaagtgagcctactgcggttgtagattcacggtatatttcgtctacagaaattgttagaaatgaaaagatttactcctctgttgtatttcctatatattaacctagtttagtttgaatataatacttgaatttttctggcaattaattgcttaaaacttgacttcgacttagtacattgtatatatagACTGTATTGC-CTG---CCCTTGATT---CCA--GACGCTCCGCTAG-GAAATTCAA-GGACAG-----GTAACCACCAACGTCATGACAGTA-GGAAAAC---CTG-CAAGTTCGCGCAT-AGCAAGTGCG-CAT--CCTAAATATAAACTGAAACTTTGGCTT-GAAATAG-GC
Alignments
lowQualScore : 11111 22222222222222222 1111111 3333333333 1111 5555555555555555555555555555555555555555555555555555555555555 11111111 111111 2222222 111 11111 11111111 666666666666666666666 11 1111 111111 9999999999999999999999999999999999999999999999 11111111 111111111 1111111111
lowQualScore : 4 777 777 66 55 1 5 22222 2 4 4 4 4 66 5 4 4 5 5 88888888888888888 4444444 66 5 5 5 5 7777777777 5 555 5 0 66 0000 888 5 66 5 66 888 5 66 0000000000000000000000000000000000000000000000000000000000000 9999 9999 66 66666666 4 555555 4 3333333 4 666 11111 66 99999999 66 0 9999 66 66 8 77777 4 111111111111111111111 5 2 5 5 5 5 888 888 5 0 11 3 7 5 0000 4 4 1 222222 8888888888888888888888888888888888888888888888 44444444 666666666 4 4 4 55 3 4 3 3 4 3333333333 5
lowQualScore : . ... ... .. .. . . ..... . . . . . .. . . . . . ................. ....... .. . . . . .......... . ... . . .. .... ... . .. . .. ... . .. ............................................................. .... .... .. ........ . ...... . ....... . ... ..... .. ........ .. . .... .. .. . ..... . ..................... . . . . . . ... ... . . .. . . . .... . . . ...... .............................................. ........ ......... . . . .. . . . . . .......... .
lowQualScore : 4 888 888 11 66 0 0 55555 5 4 4 0 4 11 3 4 4 0 0 66666666666666666 6666666 99 0 0 0 0 4444444444 0 111 0 4 99 6666 888 0 99 0 99 888 0 99 2222222222222222222222222222222222222222222222222222222222222 4444 4444 11 11111111 4 777777 4 9999999 4 777 11111 11 99999999 11 1 4444 11 11 9 22222 4 555555555555555555555 6 0 0 0 0 5 999 888 0 1 44 4 6 0 6666 4 4 9 888888 4444444444444444444444444444444444444444444444 55555555 000000000 0 0 0 55 2 0 6 6 4 1111111111 0
consensus : TAGACTGGATTGC-CTG---CCCTTGATT---CCA--GACGCTCCGCTAG-GAANTTCAA-GGACAG-----GTAACCACCACCGCCATGACAGTA-GGAAAACCTACT-GCAGTTTCGCGCAT-AGCAAGTGCG-CAT--CCTAAAAATAAACTGAANCTTTGGCTT-GAAATGG-GCGG-A-TCAAAGAATGTATAC-AA--NCCAT------GTTA--TCAT-AATA-C-CAT-TA-T-TACAG--GACAT-T-G-CAC-TAGTAC--A----CT---AAC-TGCAT--ATT-AAATTG--ACTG---AAC-ATTC--TAAAACAC-G------------T-------C-T-ATGTACA-----------CT---------------GA----TG----AC--ATGTTTTA--------C-TTG-----GAAAT-AAA-------CG-A---CTGCA-----T--TGTGCTCTG-------TAC--TCAGGCGCC----TTATCA--GGTCAG--CT-TG-TC-AG-CTG------------A-------ATCCAAGCAATTTAA-ATT-GA-TTTA--AA---TAATG-CTGAAGTCGAACATCGAACTTCTATAGCTCANACG-CC----ACTGAGGA-TAACACC-TTTCTA------AATATAG----A-------------T-------------C-------------TAT--------TGCC---------CGT-GACG-CGAAA-CATGGCTG--GTGGTTACC-TGTCGTTGAT-TTA-GCGTGGCGC-C----T-T---AT-CATCGACAGCGTACCAGTC
Reference ( family-1178 ) : TAGACTGGATTGC-CTG---CCCTTGATT---CCA--GACGCTCCGCTAG-GAANTTCAA-GGACAG-----GTAACCACCACCGCCATGACAGTA-GGAAAACCTACT-GCAGTTTCGCGCAT-AGCAAGTGCG-CAT--CCTAAAAATAAACTGAANCTTTGGCTT-GAAATGG-GCGG-A-TCAAAGAATGTATAC-AA--NCCAT------GTTA--TCAT-AATA-C-CAT-TA-T-TACAG--GACAT-T-G-CAC-TAGTAC--A----CT---AAC-TGCAT--ATT-AAATTG--ACTG---AAC-ATTC--TAAAACAC-G------------T-------C-T-ATGTACA-----------CT---------------GA----TG----AC--ATGTTTTA--------C-TTG-----GAAAT-AAA-------CG-A---CTGCA-----T--TGTGCTCTG-------TAC--TCAGGCGCC----TTATCA--GGTCAG--CT-TG-TC-AG-CTG------------A-------ATCCAAGCAATTTAA-ATT-GA-TTTA--AA---TAATG-CTGAAGTCGAACATCGAACTTCTATAGCTCANACG-CC----ACTGAGGA-TAACACC-TTTCTA------AATATAG----A-------------T-------------C-------------TAT--------TGCC---------CGT-GACG-CGAAA-CATGGCTG--GTGGTTACC-TGTCGTTGAT-TTA-GCGTGGCGC-C----T-T---AT-CATCGACAGCGTACCAGTC
gi|1 : A-GGAAAACCTACT-GCAGTTTCGCGCAT-AGCAAGTGCGACAT--TCCTAAAATAACCGGAAACTTTAGCTT-GAAACTA-GCGG-ACTCAAA----------------CCAT------TTTA--TTAT-AATA-CGCCT-TA-C--ACGC--GCAAT-T-G-C-T-TAGTACGTA----CTCATAACATGCAT--ATTTAAATTG--CCTG---AAC-ATTC--TAAAACATAG------------T-------CAT-ATGTACACGAAATCTTACCT---------------GATGGGTG----AC--ATGTTTTA--------C-TTC-----AAAATAAAA-------CG-A---CTGCAATATTT--CGTGCTCTG-------TAC--T--GGCGCC----TTATCA--GGTCAG--CT-CGTTC-AG-CTGTCGCCTTGC---ATTTCCACATCCAAGCAATTTAACATT-GA-T-----GA---TAATG-CCAAAGTCGA
gi|1 : actggTATAGTTCACAGGACCTGTGACTGAGGAATAACACC-TTTC-A------AATATAG----A-------------G-------------C-------------TCT--------T-CT---------CAT-CACTTCTAA----TTCCTGCAACAATTCCC-TGTCGATGAT-T-A-ACGTGGCGC-CCCGAT-T---TTGCAT-GACAGCGTACCAGTCttcaggttctgttttcattcttgaagagatttgaataaatgtcaaataaatagttcgaggactgattttgattagccgcgaatgggccactgacggttgatagattcaccggtaatatttcgtcatacagaaattgttagagaaataaaagatttactcctcctgtatgtatttcctatataacctagtttacttgaattttatctggcaattgattgtttaaacttaaatttccgacctaagtatatagttcacaggacctgtgactgaggaataacacctttcaaatatagagctcttctcatcacttctaattcctgcaacaattccctgtcgatgattaacgtggcgccccgattttgcatgacagcgtaccagtc
gi|10 : actggaggaaaacctactgcagtttcgcgcatagcaagtgcgacattcctaaaataaccggaaactttagcttgaaactagcggactcaaaccattttattataatacgccttacacgcgcaattgcttagtacgtactcataacatgcatatttaaattgcctgaacattctaaaacatagtcatatgtacacgaaatcttacctgatgggtgacatgttttacttcaaaataaaacgactgcaatatttcgtgctctgtactggcgccttatcaggtcagctcgttcagctgtcgccttgcatttccacatccaagcaatttaacattgatgataatgccaaagtcgattcaggttctgttttcattcttgaagagatttgaataaatgtcaaataaatagttcgaggactgattttgattagccgcgaatgggccactgacggttgatagattcaccggtaatatttcgtcatacagaaattgttagagaaataaaagatttactcctcctgtatgtatttcctatataacctagtttacttgaattttatctggcaattgattgtttaaacttaaatttccgacctaagtaGACTGGATT----TGGGTCCCTTG-TT---CCA--GACG-TCCGCTAG-GAAA-TCAATGGACAG-----GTAACCA-CACCGCCATGAC-GTA-GGAAAACC-ACTGGCAGTTGCGTGCAT-GGCAAGTG-G-C-T--CCTAAA---AAACTGAA-CTTTAGCTT-CAAATAG-GCGG-A-TCACAGAATAT-TTT-AAGCGCCCT------ATTA--TCA--GATAGC-CAT-TA-
gi|11 : acCAT-T-A-TAC-TAGTAC--A----CT---AAG-TGCAT--ATT-AAATTG--ACTGTTCAAC-ATTT--TAAAACAA-GGATAAACATTAAT-------C-T--TACGCA-----------TG---------------GA----TT----AC--ATGTTTTAAACGACTGCATTGTGCCAGAGAT-ATATATGTCTCG-AT--CTG-A-----T--TGTGCTCTGAGCTGTGTAC--TCAGGCGCC----TTATCACTGGTCAG--CT-TG--C-AG-
gi|12 : TGAACTTGA-CATCGACCTTCTAAAGCTCACACG-CC----ACTGATGA-TA-TAG--TTTCTA------AATATAG----A-------------T-------------CATCTCATCACTTCTAT--------TGCC---------TGT-GACG-CGAAA-CATGGCTG--GTGGTTACC-TGTCGTTGAT-TTA-GCGT
gi|13 : tgT---------------GA----TG----ACCTATGTTTTA--------C-TTG-----GAAAT-AAA-------CG-A---CTGCA-----T--TGTGCTCTA-------TAC--TAAGGCGCC----TTATCA--GGTCAG--CTGTA-TT----CT-------------A-------ATCCAAGCAATTTAA-ATT-GA-TTTA--AA----------TGAAGTCGAACATCAAACTTCTATAGCTCAAACG-CC----ACaacatggaccattcc
gi|14 : AT--------TTCC---------TGT-GATG-TGCTATCATGGCTG--GTGGTTACC-TGTGATTGA--TTA-GCATGG
gi|15 : ctaaaaatagatggggtaatcccgttgcaACTGGATTGC-CTG---CCCTTGATT---CCA--GATGCTCCGCTAG-GAAATTCAA-GGACAG-----GTAACCACCACCGCCATGACAGTA-GGAAAACCTACT-GCAGTCTTGCGCAT-AGCAAGTGtctgaatagcagctagggcacctgagtcta
gi|16 : aACTGGATTGC-CTG---CCCTTGATT---CCA--AACGCTCCGCTAG-GAATTTC
gi|17 : TGAT-TTA-GCGTGGCGC-C----C-T---AT-CATCGACAGAGTACCAGT
gi|2 : TTTCGCGCAT-AGCAAGTGCG-CAT--CCTAAAAATAAACCGAAACTTTAGCTT-GAAATAG-GCGG-A-TCAAA----------------CCAT------TTTA--TCAT-AATA-C-CAC-TA-----CAGC-GACAT-T-G-AGC-TAGTAC--GTACTCT---AAC-TGCAT--ATT-AAATTG--ACTG---AAC-ATTC--TAAAACAC----------------------C-T-ATGTACA-----------CTATAATCTTACTGATGGA----TG----AC--ATGTTTTA--------C-TTG-----GAAAC-AAA-------CG-A---TTGCA-----T--TGTGCTCTG-------TAT--TCAGGCGCCTTAATTATCA--GGTCAG--CT-CG-TT-AG-CTGTAGCTGCATTCCA-------ATCCAAGCAAGTTAA-ATT-GA-TTT----A---TAATG-C-AAAGTCGAa
gi|2 : CTGAGGA-TAGCACC-TTTCTA------AATATAG----A-------------TAATCTCATCACTTC-------------TAT--------TGCC---------CGT-GACG-CGCAA-CATGGCTG--GT-GTTACCTTGTTGTTGAT-TTA-GCGTGGCAC-gttcaggttttgtttcattcttgaagagattttgaataaatgaaaataaatagttcgagactgattttgattagccattaagtgggcctactgcggtttgagattcacggtatatttcgtctacagaaattattagaaatgaaaagatttactcctctgttgtatttcctatattaacctagtttagtttgaatataaacttgactttttctggcaattaatgcttaaaacttgacttcgacttagtacattgtatatatagctgaggatagcacctttctaaatatagataatctcatcacttctattgcccgtgacgcgcaacatggctggtgttaccttgttgttgatttagcgtggcac
gi|3 : tttcgcgcatagcaagtgcgcatcctaaaaataaaccgaaactttagcttgaaataggcggatcaaaccattttatcataataccactacagcgacattgagctagtacgtactctaactgcatattaaattgactgaacattctaaaacacctatgtacactataatcttactgatggatgacatgttttacttggaaacaaacgattgcattgtgctctgtattcaggcgccttaattatcaggtcagctcgttagctgtagctgcattccaatccaagcaagttaaattgatttataatgcaaagtcgagttcaggttttgtttcattcttgaagagattttgaataaatgaaaataaatagttcgagactgattttgattagccattaagtgggcctactgcggtttgagattcacggtatatttcgtctacagaaattattagaaatgaaaagatttactcctctgttgtatttcctatattaacctagtttagtttgaatataaacttgactttttctggcaattaatgcttaaaacttgacttcgacttagtacattgtatatatagAGACTGGATTGC-CTG---CCCTTGATTCTCCCAACAACGCTCC-CTAGCGAATATCAA-GGACAGTACATGTAACCA-CACCGCCA-GACAGTAGGGAAAACCTACT-GCAG-TTCGCCCGC-AAGAAGTGCG-CATGCCCTAATAAT-AACTGAATCTTTGGCTTGGAAATGGAGCGGCA-TCAAA-AATGGATACAAA--ACCATTTGTTGGTTAATTCAT-AATA-C-CATATGTT-TACAAGTGACAT-TCGCCACTTAGTAC--A-----T---AAC-TGCCTGAATT-AAATTGACACTG---AACGATTCTTTAAAACAC-G------------T-------C-T-AT-TGAA-----------CT---------------GA-----G----AC--A-GTTTTA--------C-TTGT----GAAAT-AAA-------CG-AC--CTGCA-----T--TGGGCTCTA-------TACAATCAGG-GCC----TTATCA--GGTCAGACTT-TG-TCAAG-CTG------------A-------ATCCAAGCAA--TAA-ATT-GATTTTA--AA---TAATGACTGAAGTCGAACATCGAA--TCTA-AGCTCA-ACG-CC----AAT-AGG---AACACCTTTTCTA------ATTATAAGATTA-------------T-------------C-------------TCT--------CACTTTCTAGGTACGTAGACG-CGAAA-CATGTCTG--GT-GTTACT-T-TCGTTGATCTTAGGCG-GGCGC-C----TATCTAAT-CATCGACAGC-TA-CAGT
gi|4 : AGGCCGGATTGC-CTG---CCCTTGATT---CCA--GACGCTCCGCTAG-TAAATTCAA-GGACAG-----GTAACAACCACCGCCATGACAGTA-GGAAAACCTACT-GCAGTTTCGCGCAT-AGCAAGTGCG-CAT--CCTAAAAATAAACTGAAACTTTAGCTT-GAAATAG-GCGA-A-TCAAAGAAT-TGTTT-AA--GCCCC------ATTA--TCAT-ATAA-C-CAT-TA-T-------------------AC-TAGTAC--A----CT---AAC-TGCAA--ATT-AAATTG--ACTG---AAC-ATTC--TAAAACAA-G------------GAGAGACAC-TAATCT-TA-----------CT---------------GA----TGGATTAC--ATGTTTTA--------T-TTG-----GAAAT-AGA-------TGTACCCCTCCG-----TTCTATTTTCTA-------TA---TTAG----C----CTATTA--AGGC----CT-TT-AT-AGTTTG------------A-------AAATAA--AACTTGG-ATT-T--TCTGCCAATATTAATT-GTGAACTTG-ACATCGACTTTCTATAGCTCACACG-CC----ACTGAGGA-T-ATA-G-TTTCTA------AATATAG----ATCATCTCATCAATT-------------C-------------TAT--------TGCC---------CGT-GACG-CGAAA-CATGGCTG--GTAGTTACC-TGTCGTTGA--TTA-GCGTGTCGC-C----T-T---AT-CATAGACAGCGTACCAGTC
gi|5 : TAGACTGGCTTGC-CTG---CCCTTGATT---CCA--AACACTCCGCTAG-TAATTTCAA-GGACAG-----GTAACCACCACCGCCATGACAGTA-GGAAAACCTACT-GCAGTTTCGCGCAT-AGCAAGTGCG-CAT--CCTAAAAATAAACTGAATCTTTGGCTT-GAAATGG-GCGG-A-TCAAAGAATGTATAC-AA--TCCAT------GTTA--TCAT-AATA-C-CAT-TA-TATACAGT-GACAT-T-G-CAC-CAGTTC--A----CT---AAC-TGCAT--ATT-AAATTG--ACTG---AAC-ATTC--TAAAACAC-G------------T-------C-T-ATGTACA-----------CT---------------GA----TG----AC--ATGTTTTA--------C-TTG-----GAAAT-AAA-------CG-A---CTGCA-----T--TGTGCTCTA-------TAC--TCAGGCGCC----TTATCA--GGTCAG--CT-TG-TC-AG-CTG------------A-------ATCCAATCAATTTAA-ATT-GA-TATA--AA---TAATG-CTGAAGTCGAACATCGAACTTTTATAGCTCAAACG-CC----ACTGAGGA-TAACACC-TTTCTA------ATTATAG----A-------------T-------------C-------------TAT--------TGCC---------CGT-GGCG-CGAAA-CATAGCTG--GTGGTTACC-TGTCGTTGAT-TTA-ACTTGTCAC-C----T-T---AT-CATCGACAGCGTACCAGTC
gi|6 : TAGGCTGGATTGC-CTG---CCCTTGATT---CCA--AATGCTCCGCTAG-GAATTTCAA-GGACAG-----GTAACCACCGCCGCCATGACAGTA-GGAAAACCTACT-GCAGTTTCGCGCAT-AGGAAGTGCG-CAT--CCTAAAAGTAACCTGAATCTTTGGCTT-GAAATG---------------AATGTATAC-AA--ACCAT------GTTA--TCAT-AATA-C-CAT-TA-TGTACAGA-GACAT-T-G-CAC-TAGTAT--A----CT---AAC-TGCAT--ATT-AAATTG--ACTG---AAC-ATTC--TAAAACAC-G------------T-------C-T-ATGTACA-----------CT---------------GA----TG----AC--ATGCTTTA--------C-TTA-----GAAAT-AAACGAT---CG-A---CTGTA-----T--TGTGC------------AC--TCAGGCGCC----TTATCA--GGTCAG--CTGTA-TT----CT-------------A-------ATCCAAGCAATTTAA-ATT-GA-TTTA--TA---TAATG-CTGAAGTCGAGC------------------------------ACTGAGGA-TAACACC-TTTCTAATTTTTAATATAG----A-------------T-------------CATCT---------CATCACTTAGATGCC---------CGT-GACG-CGAAA-CATGGCTG--GTGGTTACC-TGTCGTTGAT-TAA-GCGTGGCGC-C----T-T---AT-CATCGACAGCGTACCAGT
gi|7 : ACTGGATTGCGCTG---CC-TTGATT---CCA--ACCACGCCGCTAG--AATTTCAA-GGACAG-----GTAACCACCACC---ATGACAGTA-GGAAAA-CTACT-GCAGTTTCGCGCATAAGCAAGTGCG-CAT--CCTAAAAATAAACTGAATCTTTGGCTT-GAAATGG-GCGG-A-TCAA--GATGTATAC-AA--CACAT------GTTA--TCATAAACA-T-CA--TA-T-TACAG--TACATCT-G-CAC-CAGT----A----CT---AAC-TG-AT--ATT--AATTG--ACTG---AAC-ATTC---AAAACAC-G------------T---------T-ATGTA-A-----------CT---------------GA----TG----AC--ATGTTTTA--------C-TT------GAAAT-AAA-------CG-A---CTGCA-----T--TGTGCTAT--------TAC--TCAGGCGCC----TTATCA--GGTCAG--TC-TG-TC-AG-CTG--------------------ATGCAA-CAATTTAA-ATTAGA-TATA--AA---TAATG-CTGAAATCGAACATCGAA-TTTTATAGCTCAAACG-CC----ACTGAGGA-TAA-ACC-TTTC-A------ATTATAAT---C-------------T-------------C-------------TAT--------TGCC---------CGT-G-CG-CGAAA-CATAGCTG--GTGGTTACT---TCGTTGAT-TTA-AC-TTTCACTC----T-T---AT-CATCG-CAGCGTAC
gi|8 : CTGAGGA-TAGCACC-TTTCTA------AATATAG----A-------------TAATCTCATCACTTC-------------TAT--------TGCC---------CGT-GACG-CGCAA-CATGGCTG--GTGGTTACC-TGTTGTTAAT-CTA-TCGTGGCGC-C----C-G---AT-CATCGACAGCGTACCGG
gi|9 : taatgcaaaatcgagttaagttttttttttcattcttgaagatattctgataaatgaaaataaatagttcaagactgattttgattagccgttaagtgagcctactgcggttgtagattcacggtatatttcgtctacagaaattgttagaaatgaaaagatttactcctctgttgtatttcctatatattaacctagtttagtttgaatataatacttgaatttttctggcaattaattgcttaaaacttgacttcgacttagtacattgtatatatagACTGTATTGC-CTG---CCCTTGATT---CCA--GACGCTCCGCTAG-GAAATTCAA-GGACAG-----GTAACCACCAACGTCATGACAGTA-GGAAAAC---CT-GCAAGTTCGCGCAT-AGCAAGTGCG-CAT--CCTAAATATAAACTGAAACTTTGGCTT-GAAATAG-GC
Alignments
lowQualScore : 11111 22222222222222222 1111111 3333333333 1111 5555555555555555555555555555555555555555555555555555555555555 11111111 111111 2222222 111 11111 11111111 666666666666666666666 11 1111 111111 9999999999999999999999999999999999999999999999 11111111 111111111 1111111111
lowQualScore : 4 777 777 66 55 1 5 22222 2 4 4 4 4 66 5 4 4 5 5 88888888888888888 4444444 66 5 5 5 5 7777777777 5 555 5 0 66 0000 888 5 66 5 66 888 5 66 0000000000000000000000000000000000000000000000000000000000000 9999 9999 66 66666666 4 555555 4 3333333 4 666 11111 66 99999999 66 0 9999 66 66 8 77777 4 111111111111111111111 5 2 5 5 5 5 888 888 5 0 11 3 7 5 0000 4 4 1 222222 8888888888888888888888888888888888888888888888 44444444 666666666 4 4 4 55 3 4 3 3 4 3333333333 5
lowQualScore : . ... ... .. .. . . ..... . . . . . .. . . . . . ................. ....... .. . . . . .......... . ... . . .. .... ... . .. . .. ... . .. ............................................................. .... .... .. ........ . ...... . ....... . ... ..... .. ........ .. . .... .. .. . ..... . ..................... . . . . . . ... ... . . .. . . . .... . . . ...... .............................................. ........ ......... . . . .. . . . . . .......... .
lowQualScore : 4 888 888 11 66 0 0 55555 5 4 4 0 4 11 3 4 4 0 0 66666666666666666 6666666 99 0 0 0 0 4444444444 0 111 0 4 99 6666 888 0 99 0 99 888 0 99 2222222222222222222222222222222222222222222222222222222222222 4444 4444 11 11111111 4 777777 4 9999999 4 777 11111 11 99999999 11 1 4444 11 11 9 22222 4 555555555555555555555 6 0 0 0 0 5 999 888 0 1 44 4 6 0 6666 4 4 9 888888 4444444444444444444444444444444444444444444444 55555555 000000000 0 0 0 55 2 0 6 6 4 1111111111 0
consensus : TAGACTGGATTGC-CTG---CCCTTGATT---CCA--GACGCTCCGCTAG-GAANTTCAA-GGACAG-----GTAACCACCACCGCCATGACAGTA-GGAAAACCTACT-GCAGTTTCGCGCAT-AGCAAGTGCG-CAT--CCTAAAAATAAACTGAANCTTTGGCTT-GAAATGG-GCGG-A-TCAAAGAATGTATAC-AA--NCCAT------GTTA--TCAT-AATA-C-CAT-TA-T-TACAG--GACAT-T-G-CAC-TAGTAC--A----CT---AAC-TGCAT--ATT-AAATTG--ACTG---AAC-ATTC--TAAAACAC-G------------T-------C-T-ATGTACA-----------CT---------------GA----TG----AC--ATGTTTTA--------C-TTG-----GAAAT-AAA-------CG-A---CTGCA-----T--TGTGCTCTG-------TAC--TCAGGCGCC----TTATCA--GGTCAG--CT-TG-TC-AG-CTG------------A-------ATCCAAGCAATTTAA-ATT-GA-TTTA--AA---TAATG-CTGAAGTCGAACATCGAACTTCTATAGCTCANACG-CC----ACTGAGGA-TAACACC-TTTCTA------AATATAG----A-------------T-------------C-------------TAT--------TGCC---------CGT-GACG-CGAAA-CATGGCTG--GTGGTTACC-TGTCGTTGAT-TTA-GCGTGGCGC-C----T-T---AT-CATCGACAGCGTACCAGTC
Reference ( family-1178 ) : TAGACTGGATTGC-CTG---CCCTTGATT---CCA--GACGCTCCGCTAG-GAANTTCAA-GGACAG-----GTAACCACCACCGCCATGACAGTA-GGAAAACCTACT-GCAGTTTCGCGCAT-AGCAAGTGCG-CAT--CCTAAAAATAAACTGAANCTTTGGCTT-GAAATGG-GCGG-A-TCAAAGAATGTATAC-AA--NCCAT------GTTA--TCAT-AATA-C-CAT-TA-T-TACAG--GACAT-T-G-CAC-TAGTAC--A----CT---AAC-TGCAT--ATT-AAATTG--ACTG---AAC-ATTC--TAAAACAC-G------------T-------C-T-ATGTACA-----------CT---------------GA----TG----AC--ATGTTTTA--------C-TTG-----GAAAT-AAA-------CG-A---CTGCA-----T--TGTGCTCTG-------TAC--TCAGGCGCC----TTATCA--GGTCAG--CT-TG-TC-AG-CTG------------A-------ATCCAAGCAATTTAA-ATT-GA-TTTA--AA---TAATG-CTGAAGTCGAACATCGAACTTCTATAGCTCANACG-CC----ACTGAGGA-TAACACC-TTTCTA------AATATAG----A-------------T-------------C-------------TAT--------TGCC---------CGT-GACG-CGAAA-CATGGCTG--GTGGTTACC-TGTCGTTGAT-TTA-GCGTGGCGC-C----T-T---AT-CATCGACAGCGTACCAGTC
gi|1 : A-GGAAAACCTACT-GCAGTTTCGCGCAT-AGCAAGTGCGACAT--TCCTAAAATAACCGGAAACTTTAGCTT-GAAACTA-GCGG-ACTCAAA----------------CCAT------TTTA--TTAT-AATA-CGCCT-TA-C--ACGC--GCAAT-T-G-C-T-TAGTACGTA----CTCATAACATGCAT--ATTTAAATTG--CCTG---AAC-ATTC--TAAAACATAG------------T-------CAT-ATGTACACGAAATCTTACCT---------------GATGGGTG----AC--ATGTTTTA--------C-TTC-----AAAATAAAA-------CG-A---CTGCAATATTT--CGTGCTCTG-------TAC--T--GGCGCC----TTATCA--GGTCAG--CT-CGTTC-AG-CTGTCGCCTTGC---ATTTCCACATCCAAGCAATTTAACATT-GA-T-----GA---TAATG-CCAAAGTCGA
gi|1 : actggTATAGTTCACAGGACCTGTGACTGAGGAATAACACC-TTTC-A------AATATAG----A-------------G-------------C-------------TCT--------T-CT---------CAT-CACTTCTAA----TTCCTGCAACAATTCCC-TGTCGATGAT-T-A-ACGTGGCGC-CCCGAT-T---TTGCAT-GACAGCGTACCAGTCttcaggttctgttttcattcttgaagagatttgaataaatgtcaaataaatagttcgaggactgattttgattagccgcgaatgggccactgacggttgatagattcaccggtaatatttcgtcatacagaaattgttagagaaataaaagatttactcctcctgtatgtatttcctatataacctagtttacttgaattttatctggcaattgattgtttaaacttaaatttccgacctaagtatatagttcacaggacctgtgactgaggaataacacctttcaaatatagagctcttctcatcacttctaattcctgcaacaattccctgtcgatgattaacgtggcgccccgattttgcatgacagcgtaccagtc
gi|10 : actggaggaaaacctactgcagtttcgcgcatagcaagtgcgacattcctaaaataaccggaaactttagcttgaaactagcggactcaaaccattttattataatacgccttacacgcgcaattgcttagtacgtactcataacatgcatatttaaattgcctgaacattctaaaacatagtcatatgtacacgaaatcttacctgatgggtgacatgttttacttcaaaataaaacgactgcaatatttcgtgctctgtactggcgccttatcaggtcagctcgttcagctgtcgccttgcatttccacatccaagcaatttaacattgatgataatgccaaagtcgattcaggttctgttttcattcttgaagagatttgaataaatgtcaaataaatagttcgaggactgattttgattagccgcgaatgggccactgacggttgatagattcaccggtaatatttcgtcatacagaaattgttagagaaataaaagatttactcctcctgtatgtatttcctatataacctagtttacttgaattttatctggcaattgattgtttaaacttaaatttccgacctaagtaGACTGGATT----TGGGTCCCTTG-TT---CCA--GACG-TCCGCTAG-GAAA-TCAATGGACAG-----GTAACCA-CACCGCCATGAC-GTA-GGAAAACC-ACTGGCAGTTGCGTGCAT-GGCAAGTG-G-C-T--CCTAAA---AAACTGAA-CTTTAGCTT-CAAATAG-GCGG-A-TCACAGAATAT-TTT-AAGCGCCCT------ATTA--TCA--GATAGC-CAT-TA-
gi|11 : acCAT-T-A-TAC-TAGTAC--A----CT---AAG-TGCAT--ATT-AAATTG--ACTGTTCAAC-ATTT--TAAAACAA-GGATAAACATTAAT-------C-T--TACGCA-----------TG---------------GA----TT----AC--ATGTTTTAAACGACTGCATTGTGCCAGAGAT-ATATATGTCTCG-AT--CTG-A-----T--TGTGCTCTGAGCTGTGTAC--TCAGGCGCC----TTATCACTGGTCAG--CT-TG--C-AG-
gi|12 : TGAACTTGA-CATCGACCTTCTAAAGCTCACACG-CC----ACTGATGA-TA-TAG--TTTCTA------AATATAG----A-------------T-------------CATCTCATCACTTCTAT--------TGCC---------TGT-GACG-CGAAA-CATGGCTG--GTGGTTACC-TGTCGTTGAT-TTA-GCGT
gi|13 : tgT---------------GA----TG----ACCTATGTTTTA--------C-TTG-----GAAAT-AAA-------CG-A---CTGCA-----T--TGTGCTCTA-------TAC--TAAGGCGCC----TTATCA--GGTCAG--CTGTA-TT----CT-------------A-------ATCCAAGCAATTTAA-ATT-GA-TTTA--AA----------TGAAGTCGAACATCAAACTTCTATAGCTCAAACG-CC----ACaacatggaccattcc
gi|14 : AT--------TTCC---------TGT-GATG-TGCTATCATGGCTG--GTGGTTACC-TGTGATTGA--TTA-GCATGG
gi|15 : ctaaaaatagatggggtaatcccgttgcaACTGGATTGC-CTG---CCCTTGATT---CCA--GATGCTCCGCTAG-GAAATTCAA-GGACAG-----GTAACCACCACCGCCATGACAGTA-GGAAAACCTACT-GCAGTCTTGCGCAT-AGCAAGTGtctgaatagcagctagggcacctgagtcta
gi|16 : aACTGGATTGC-CTG---CCCTTGATT---CCA--AACGCTCCGCTAG-GAATTTC
gi|17 : TGAT-TTA-GCGTGGCGC-C----C-T---AT-CATCGACAGAGTACCAGT
gi|2 : TTTCGCGCAT-AGCAAGTGCG-CAT--CCTAAAAATAAACCGAAACTTTAGCTT-GAAATAG-GCGG-A-TCAAA----------------CCAT------TTTA--TCAT-AATA-C-CAC-TA-----CAGC-GACAT-T-G-AGC-TAGTAC--GTACTCT---AAC-TGCAT--ATT-AAATTG--ACTG---AAC-ATTC--TAAAACAC----------------------C-T-ATGTACA-----------CTATAATCTTACTGATGGA----TG----AC--ATGTTTTA--------C-TTG-----GAAAC-AAA-------CG-A---TTGCA-----T--TGTGCTCTG-------TAT--TCAGGCGCCTTAATTATCA--GGTCAG--CT-CG-TT-AG-CTGTAGCTGCATTCCA-------ATCCAAGCAAGTTAA-ATT-GA-TTT----A---TAATG-C-AAAGTCGAa
gi|2 : CTGAGGA-TAGCACC-TTTCTA------AATATAG----A-------------TAATCTCATCACTTC-------------TAT--------TGCC---------CGT-GACG-CGCAA-CATGGCTG--GT-GTTACCTTGTTGTTGAT-TTA-GCGTGGCAC-gttcaggttttgtttcattcttgaagagattttgaataaatgaaaataaatagttcgagactgattttgattagccattaagtgggcctactgcggtttgagattcacggtatatttcgtctacagaaattattagaaatgaaaagatttactcctctgttgtatttcctatattaacctagtttagtttgaatataaacttgactttttctggcaattaatgcttaaaacttgacttcgacttagtacattgtatatatagctgaggatagcacctttctaaatatagataatctcatcacttctattgcccgtgacgcgcaacatggctggtgttaccttgttgttgatttagcgtggcac
gi|3 : tttcgcgcatagcaagtgcgcatcctaaaaataaaccgaaactttagcttgaaataggcggatcaaaccattttatcataataccactacagcgacattgagctagtacgtactctaactgcatattaaattgactgaacattctaaaacacctatgtacactataatcttactgatggatgacatgttttacttggaaacaaacgattgcattgtgctctgtattcaggcgccttaattatcaggtcagctcgttagctgtagctgcattccaatccaagcaagttaaattgatttataatgcaaagtcgagttcaggttttgtttcattcttgaagagattttgaataaatgaaaataaatagttcgagactgattttgattagccattaagtgggcctactgcggtttgagattcacggtatatttcgtctacagaaattattagaaatgaaaagatttactcctctgttgtatttcctatattaacctagtttagtttgaatataaacttgactttttctggcaattaatgcttaaaacttgacttcgacttagtacattgtatatatagAGACTGGATTGC-CTG---CCCTTGATTCTCCCAACAACGCTCC-CTAGCGAATATCAA-GGACAGTACATGTAACCA-CACCGCCA-GACAGTAGGGAAAACCTACT-GCAG-TTCGCCCGC-AAGAAGTGCG-CATGCCCTAATAAT-AACTGAATCTTTGGCTTGGAAATGGAGCGGCA-TCAAA-AATGGATACAAA--ACCATTTGTTGGTTAATTCAT-AATA-C-CATATGTT-TACAAGTGACAT-TCGCCACTTAGTAC--A-----T---AAC-TGCCTGAATT-AAATTGACACTG---AACGATTCTTTAAAACAC-G------------T-------C-T-AT-TGAA-----------CT---------------GA-----G----AC--A-GTTTTA--------C-TTGT----GAAAT-AAA-------CG-AC--CTGCA-----T--TGGGCTCTA-------TACAATCAGG-GCC----TTATCA--GGTCAGACTT-TG-TCAAG-CTG------------A-------ATCCAAGCAA--TAA-ATT-GATTTTA--AA---TAATGACTGAAGTCGAACATCGAA--TCTA-AGCTCA-ACG-CC----AAT-AGG---AACACCTTTTCTA------ATTATAAGATTA-------------T-------------C-------------TCT--------CACTTTCTAGGTACGTAGACG-CGAAA-CATGTCTG--GT-GTTACT-T-TCGTTGATCTTAGGCG-GGCGC-C----TATCTAAT-CATCGACAGC-TA-CAGT
gi|4 : AGGCCGGATTGC-CTG---CCCTTGATT---CCA--GACGCTCCGCTAG-TAAATTCAA-GGACAG-----GTAACAACCACCGCCATGACAGTA-GGAAAACCTACT-GCAGTTTCGCGCAT-AGCAAGTGCG-CAT--CCTAAAAATAAACTGAAACTTTAGCTT-GAAATAG-GCGA-A-TCAAAGAAT-TGTTT-AA--GCCCC------ATTA--TCAT-ATAA-C-CAT-TA-T-------------------AC-TAGTAC--A----CT---AAC-TGCAA--ATT-AAATTG--ACTG---AAC-ATTC--TAAAACAA-G------------GAGAGACAC-TAATCT-TA-----------CT---------------GA----TGGATTAC--ATGTTTTA--------T-TTG-----GAAAT-AGA-------TGTACCCCTCCG-----TTCTATTTTCTA-------TA---TTAG----C----CTATTA--AGGC----CT-TT-AT-AGTTTG------------A-------AAATAA--AACTTGG-ATT-T--TCTGCCAATATTAATT-GTGAACTTG-ACATCGACTTTCTATAGCTCACACG-CC----ACTGAGGA-T-ATA-G-TTTCTA------AATATAG----ATCATCTCATCAATT-------------C-------------TAT--------TGCC---------CGT-GACG-CGAAA-CATGGCTG--GTAGTTACC-TGTCGTTGA--TTA-GCGTGTCGC-C----T-T---AT-CATAGACAGCGTACCAGTC
gi|5 : TAGACTGGCTTGC-CTG---CCCTTGATT---CCA--AACACTCCGCTAG-TAATTTCAA-GGACAG-----GTAACCACCACCGCCATGACAGTA-GGAAAACCTACT-GCAGTTTCGCGCAT-AGCAAGTGCG-CAT--CCTAAAAATAAACTGAATCTTTGGCTT-GAAATGG-GCGG-A-TCAAAGAATGTATAC-AA--TCCAT------GTTA--TCAT-AATA-C-CAT-TA-TATACAGT-GACAT-T-G-CAC-CAGTTC--A----CT---AAC-TGCAT--ATT-AAATTG--ACTG---AAC-ATTC--TAAAACAC-G------------T-------C-T-ATGTACA-----------CT---------------GA----TG----AC--ATGTTTTA--------C-TTG-----GAAAT-AAA-------CG-A---CTGCA-----T--TGTGCTCTA-------TAC--TCAGGCGCC----TTATCA--GGTCAG--CT-TG-TC-AG-CTG------------A-------ATCCAATCAATTTAA-ATT-GA-TATA--AA---TAATG-CTGAAGTCGAACATCGAACTTTTATAGCTCAAACG-CC----ACTGAGGA-TAACACC-TTTCTA------ATTATAG----A-------------T-------------C-------------TAT--------TGCC---------CGT-GGCG-CGAAA-CATAGCTG--GTGGTTACC-TGTCGTTGAT-TTA-ACTTGTCAC-C----T-T---AT-CATCGACAGCGTACCAGTC
gi|6 : TAGGCTGGATTGC-CTG---CCCTTGATT---CCA--AATGCTCCGCTAG-GAATTTCAA-GGACAG-----GTAACCACCGCCGCCATGACAGTA-GGAAAACCTACT-GCAGTTTCGCGCAT-AGGAAGTGCG-CAT--CCTAAAAGTAACCTGAATCTTTGGCTT-GAAATG---------------AATGTATAC-AA--ACCAT------GTTA--TCAT-AATA-C-CAT-TA-TGTACAGA-GACAT-T-G-CAC-TAGTAT--A----CT---AAC-TGCAT--ATT-AAATTG--ACTG---AAC-ATTC--TAAAACAC-G------------T-------C-T-ATGTACA-----------CT---------------GA----TG----AC--ATGCTTTA--------C-TTA-----GAAAT-AAACGAT---CG-A---CTGTA-----T--TGTGC------------AC--TCAGGCGCC----TTATCA--GGTCAG--CTGTA-TT----CT-------------A-------ATCCAAGCAATTTAA-ATT-GA-TTTA--TA---TAATG-CTGAAGTCGAGC------------------------------ACTGAGGA-TAACACC-TTTCTAATTTTTAATATAG----A-------------T-------------CATCT---------CATCACTTAGATGCC---------CGT-GACG-CGAAA-CATGGCTG--GTGGTTACC-TGTCGTTGAT-TAA-GCGTGGCGC-C----T-T---AT-CATCGACAGCGTACCAGT
gi|7 : ACTGGATTGCGCTG---CC-TTGATT---CCA--ACCACGCCGCTAG--AATTTCAA-GGACAG-----GTAACCACCACC---ATGACAGTA-GGAAAA-CTACT-GCAGTTTCGCGCATAAGCAAGTGCG-CAT--CCTAAAAATAAACTGAATCTTTGGCTT-GAAATGG-GCGG-A-TCAA--GATGTATAC-AA--CACAT------GTTA--TCATAAACA-T-CA--TA-T-TACAG--TACATCT-G-CAC-CAGT----A----CT---AAC-TG-AT--ATT--AATTG--ACTG---AAC-ATTC---AAAACAC-G------------T---------T-ATGTA-A-----------CT---------------GA----TG----AC--ATGTTTTA--------C-TT------GAAAT-AAA-------CG-A---CTGCA-----T--TGTGCTAT--------TAC--TCAGGCGCC----TTATCA--GGTCAG--TC-TG-TC-AG-CTG--------------------ATGCAA-CAATTTAA-ATTAGA-TATA--AA---TAATG-CTGAAATCGAACATCGAA-TTTTATAGCTCAAACG-CC----ACTGAGGA-TAA-ACC-TTTC-A------ATTATAAT---C-------------T-------------C-------------TAT--------TGCC---------CGT-G-CG-CGAAA-CATAGCTG--GTGGTTACT---TCGTTGAT-TTA-AC-TTTCACTC----T-T---AT-CATCG-CAGCGTAC
gi|8 : CTGAGGA-TAGCACC-TTTCTA------AATATAG----A-------------TAATCTCATCACTTC-------------TAT--------TGCC---------CGT-GACG-CGCAA-CATGGCTG--GTGGTTACC-TGTTGTTAAT-CTA-TCGTGGCGC-C----C-G---AT-CATCGACAGCGTACCGG
gi|9 : taatgcaaaatcgagttaagttttttttttcattcttgaagatattctgataaatgaaaataaatagttcaagactgattttgattagccgttaagtgagcctactgcggttgtagattcacggtatatttcgtctacagaaattgttagaaatgaaaagatttactcctctgttgtatttcctatatattaacctagtttagtttgaatataatacttgaatttttctggcaattaattgcttaaaacttgacttcgacttagtacattgtatatatagACTGTATTGC-CTG---CCCTTGATT---CCA--GACGCTCCGCTAG-GAAATTCAA-GGACAG-----GTAACCACCAACGTCATGACAGTA-GGAAAAC---CT-GCAAGTTCGCGCAT-AGCAAGTGCG-CAT--CCTAAATATAAACTGAAACTTTGGCTT-GAAATAG-GC
blockSeqs : G . CTC AC CG A . TACAT C G G A . GC A G A C . AGAATATTTTAAGCG TTGTTGG AT A G . A TTTACAAGT C CGC T . TACT . . GA . AC TTC G TT CTATGTACACTATAATCTTACTGATG . GATT CT AACGACTG A GTGCCA . TATGTCT T CCC . TC GAGCTGTG AA TTAA CT AC G TCAA T GTAGCTGCATTCCA G T . A T T GCC TAT A AC A C . . . T T ATTTTT ATCATCTCATCACTTC CACTTAGA TTCTAGGTA A . T . G T C G T TATCTA .
blockSeqs : . . . . G T . . C . . . . . T . . . . AAATGGATACAAAA A . . . . . TATACAGT . A . . . . . . . . . . . GGATAAACATTAATCTTACGCATG . . . . . GT . CGAT . T . . A . . . . G TTA . GA G G . . . T A . . CT T A . . . . T . ATAATCTCATCACTTC . . . . . . G . . . . CT .
blockSeqs : . . . . G T . . C . . . . . A . . . . AGAATGTATACAAT T . . . . . TGTACAGA . G . . . . . . . . . . . GGAGAGACACTAATCTTACT . . . . . G . . . C . . G . . . . . ATA . GA G C . . . T A . . AC T C . . . . T . ATCATCTCATCAATTC . . . . . . A . . . . TT .
blockSeqs : . . . . T A . . C . . . . . T . . . . AGAATTGTTTAAG A . . . . . TTACAG . G . . . . . . . . . . . GTCTATGTACACT . . . . . G . . . . . . A . . . . . TCA . GA T T . . . C A . . A T A . . . . T . ATAATCTCATCACTTC . . . . . . G . . . . TT .
blockSeqs : . . . . T T . . C . . . . . T . . . . AATGTATACAAA G . . . . . CAGC . G . . . . . . . . . . . GTCTATGTACACT . . . . . G . . . . . . A . . . . . TCA . A G T . . . A A . . A T A . . . . T . GATTATC . . . . . . G . . . . TT .
blockSeqs : . . . . G T . . C . . . . . T . . . . GATGTATACAAC G . . . . . T . G . . . . . . . . . . . GTCTATTGAACT . . . . . G . . . . . . A . . . . . CA . A . T . . . T A . . . . . . . . . T . ATCATCT . . . . . . G . . . . TT .
blockSeqs : . . . . G T . . . . . . . . A . . . . A G . . . . . . . . . . . . . . . . . . GTTATGTAACT . . . . . A . . . . . . . . . . . . TT . G . . . . . A . . . . . . . . . T . TCTC . . . . . . G . . . . CG .
blockSeqs : . . . . . A . . . . . . . . . . . . . . . . . . . . . . . . . . TT . . . . . ATC . . . . . . . . . . .
blockSeqs : . . . . . . . . . . .
blockSeqs : . .
blockSeqCons : *** AAATGTATACAAN**** TTACAGT*** ** *** **** ***** TCA** GA******************* A** **** ATATCTCATCATTC******************************** ** TT********
originalCons : TAGACTGGATTGC-CTG---CCCTTGATT---CCA--GACGCTCCGCTAG-GAANTTCAA-GGACAG-----GTAACCACCACCGCCATGACAGTA-GGAAAACCTACT-GCAGTTTCGCGCAT-AGCAAGTGCG-CAT--CCTAAAAATAAACTGAANCTTTGGCTT-GAAATGG-GCGG-A-TCAAAGAATGTATAC-AA--NCCAT------GTTA--TCAT-AATA-C-CAT-TA-T-TACAG--GACAT-T-G-CAC-TAGTAC--A----CT---AAC-TGCAT--ATT-AAATTG--ACTG---AAC-ATTC--TAAAACAC-G------------T-------C-T-ATGTACA-----------CT---------------GA----TG----AC--ATGTTTTA--------C-TTG-----GAAAT-AAA-------CG-A---CTGCA-----T--TGTGCTCTG-------TAC--TCAGGCGCC----TTATCA--GGTCAG--CT-TG-TC-AG-CTG------------A-------ATCCAAGCAATTTAA-ATT-GA-TTTA--AA---TAATG-CTGAAGTCGAACATCGAACTTCTATAGCTCANACG-CC----ACTGAGGA-TAACACC-TTTCTA------AATATAG----A-------------T-------------C-------------TAT--------TGCC---------CGT-GACG-CGAAA-CATGGCTG--GTGGTTACC-TGTCGTTGAT-TTA-GCGTGGCGC-C----T-T---AT-CATCGACAGCGTACCAGTC
finalCons : TAGACTGGATTGC-CTG---CCCTTGATT---CCA--GACGCTCCGCTAG-GAANTTCAA-GGACAG-----GTAACCACCACCGCCATGACAGTA-GGAAAACCTACT-GCAGTTTCGCGCAT-AGCAAGTGCG-CAT--CCTAAAAATAAACTGAANCTTTGGCTT-GAAATGG-GCGG-A-TCAAAAATGTATACAAN----CCAT------GTTA--TCAT-AATA-C-CAT-TATTACAGT---GACAT-T-G-CAC-TAGTAC--A----CT---AAC-TGCAT--ATT-AAATTG--ACTG---AAC-ATTC--TAAAACAC-G------------T-------C-T-ATGTACA-----------CT---------------GA----TG----AC--ATGTTTTA--------C-TTG-----GAAAT-AAA-------CG-A---CTGCA-----T--TGTGCTCTG-------TAC--TCAGGCGCC----TTATCA--GGTCAG--CT-TGTCA--G-CTGA-------------------ATCCAAGCAATTTAA-ATT-GA-TTTA--AA---TAATG-CTGAAGTCGAACATCGAACTTCTATAGCTCANACG-CC----ACTGAGGA-TAACACC-TTTCTA------AATATAGATATCTCATCATTC--------------------------------TAT--------TGCC---------CGT-GACG-CGAAA-CATGGCTG--GTGGTTACC-TGTCGTTGAT-TTA-GCGTGGCGC-CTT--------AT-CATCGACAGCGTACCAGTC
Alignments
lowQualScore : 11111 2222222222222222 1111111 1111 1111 5555555555555555555555555555555555555555555555555555555555555 11111111 111111 2222222 111 11111 11111111 666666666666666666666 11 1111 111111 444444444444444444444444 1111111111
lowQualScore : 4 777 777 66 55 1 5 22222 4 4 4 4 66 5 4 4 5 5 55 9999999999999999 4444444 66 5 5 66 77 5555 555 33 5 555 5 0 66 0000 888 5 66 5 66 888 5 66 0000000000000000000000000000000000000000000000000000000000000 9999 9999 66 66666666 4 555555 4 3333333 4 666 11111 66 99999999 66 0 9999 66 66 8 77777 4 111111111111111111111 5 2 5 5 5 5 888 888 5 0 11 3 7 5 0000 4 4 0 111111 4 333333333333333333333333 1 4 0 4 4 4 88 3 4 3333333333 5
lowQualScore : . ... ... .. .. . . ..... . . . . .. . . . . . .. ................ ....... .. . . .. .. .... ... .. . ... . . .. .... ... . .. . .. ... . .. ............................................................. .... .... .. ........ . ...... . ....... . ... ..... .. ........ .. . .... .. .. . ..... . ..................... . . . . . . ... ... . . .. . . . .... . . . ...... . ........................ . . . . . . .. . . .......... .
lowQualScore : 4 888 888 11 66 0 0 55555 4 4 0 4 11 3 4 4 0 0 11 8888888888888888 6666666 99 0 0 99 00 9999 999 11 0 111 0 4 99 6666 888 0 99 0 99 888 0 99 2222222222222222222222222222222222222222222222222222222222222 4444 4444 11 11111111 4 777777 4 9999999 4 777 11111 11 99999999 11 1 4444 11 11 9 22222 4 555555555555555555555 6 0 0 0 0 5 999 888 0 1 44 4 6 0 6666 4 4 8 555555 0 000000000000000000000000 1 0 6 0 1 0 00 6 4 1111111111 0
consensus : TAGACTGGATTGC-CTG---CCCTTGATT---CCA--GACGCTCCGCTAG-GAANTTCAA-GGACAG-----GTAACCACCACCGCCATGACAGTA-GGAAAACCTACT-GCAGTTTCGCGCAT-AGCAAGTGCG-CAT--CCTAAAAATAAACTGAANCTTTGGCTT-GAAATGG-GCGG-A-TCA-AA-AATGTATAC-AA--NCCAT------GTTA--TCAT-AATA-C--CAT-TA-T-TAC-A-GCGACAT-T-G-CAC-TAGTAC--A----CT---AAC-TGCAT--ATT-AAATTG--ACTG---AAC-ATTC--TAAAACAC-G------------T-------C-T-ATGTACA-----------CT---------------GA----TG----AC--ATGTTTTA--------C-TTG-----GAAAT-AAA-------CG-A---CTGCA-----T--TGTGCTCTG-------TAC--TCAGGCGCC----TTATCA--GGTCAG--CT-TG-TC-AG-CTG------------A-------ATCCAAGCAATTTAA-ATT-GA-TTTA--AA---TAATG-CTGAAGTCGAACATCGAACTTCTATAGCTCANACG-CC----ACTGAGGA-TAACACC-TTTCTA------AATAT-AGA----T------A-TCTCATC-AC-TTCTATTGCCCGT-GACGCGAAA-CATGGCTGGTGGTTACC-TGTCGTTGAT-TTA-GCGTGGCGC-C----T-T---AT-CATCGACAGCGTACCAGTC
Reference ( family-1178 ) : TAGACTGGATTGC-CTG---CCCTTGATT---CCA--GACGCTCCGCTAG-GAANTTCAA-GGACAG-----GTAACCACCACCGCCATGACAGTA-GGAAAACCTACT-GCAGTTTCGCGCAT-AGCAAGTGCG-CAT--CCTAAAAATAAACTGAANCTTTGGCTT-GAAATGG-GCGG-A-TCA-AA-AATGTATAC-AA--NCCAT------GTTA--TCAT-AATA-C--CAT-TA-T-TAC-A-GTGACAT-T-G-CAC-TAGTAC--A----CT---AAC-TGCAT--ATT-AAATTG--ACTG---AAC-ATTC--TAAAACAC-G------------T-------C-T-ATGTACA-----------CT---------------GA----TG----AC--ATGTTTTA--------C-TTG-----GAAAT-AAA-------CG-A---CTGCA-----T--TGTGCTCTG-------TAC--TCAGGCGCC----TTATCA--GGTCAG--CT-TG-TC-AG-CTG------------A-------ATCCAAGCAATTTAA-ATT-GA-TTTA--AA---TAATG-CTGAAGTCGAACATCGAACTTCTATAGCTCANACG-CC----ACTGAGGA-TAACACC-TTTCTA------AATAT-AGA----T------A-TCTCATC-A--TTCTATTGCCCGT-GACGCGAAA-CATGGCTGGTGGTTACC-TGTCGTTGAT-TTA-GCGTGGCGC-C----T-T---AT-CATCGACAGCGTACCAGTC
gi|1 : A-GGAAAACCTACT-GCAGTTTCGCGCAT-AGCAAGTGCGACAT--TCCTAAAATAACCGGAAACTTTAGCTT-GAAACTA-GCGG-ACTCA-AA----------------CCAT------TTTA--TTAT-AATA-CGCC------T-TAC-ACGCGCAAT-T-G-C-T-TAGTACGTA----CTCATAACATGCAT--ATTTAAATTG--CCTG---AAC-ATTC--TAAAACATAG------------T-------CAT-ATGTACACGAAATCTTACCT---------------GATGGGTG----AC--ATGTTTTA--------C-TTC-----AAAATAAAA-------CG-A---CTGCAATATTT--CGTGCTCTG-------TAC--T--GGCGCC----TTATCA--GGTCAG--CT-CGTTC-AG-CTGTCGCCTTGC---ATTTCCACATCCAAGCAATTTAACATT-GA-T-----GA---TAATG-CCAAAGTCGA
gi|1 : actggTATAGTTCACAGGACCTGTGACTGAGGAATAACACC-TTTC-A------AATAT-AGAGCTCT--------TCTCATC-AC-TTCTAATTCCTGC--------AA-CA---------ATTCCC-TGTCGATGA--TTA-ACGTGGCGC-CCCGAT-T---TTGCAT-GACAGCGTACCAGTCttcaggttctgttttcattcttgaagagatttgaataaatgtcaaataaatagttcgaggactgattttgattagccgcgaatgggccactgacggttgatagattcaccggtaatatttcgtcatacagaaattgttagagaaataaaagatttactcctcctgtatgtatttcctatataacctagtttacttgaattttatctggcaattgattgtttaaacttaaatttccgacctaagtatatagttcacaggacctgtgactgaggaataacacctttcaaatatagagctcttctcatcacttctaattcctgcaacaattccctgtcgatgattaacgtggcgccccgattttgcatgacagcgtaccagtc
gi|10 : actggaggaaaacctactgcagtttcgcgcatagcaagtgcgacattcctaaaataaccggaaactttagcttgaaactagcggactcaaaccattttattataatacgccttacacgcgcaattgcttagtacgtactcataacatgcatatttaaattgcctgaacattctaaaacatagtcatatgtacacgaaatcttacctgatgggtgacatgttttacttcaaaataaaacgactgcaatatttcgtgctctgtactggcgccttatcaggtcagctcgttcagctgtcgccttgcatttccacatccaagcaatttaacattgatgataatgccaaagtcgattcaggttctgttttcattcttgaagagatttgaataaatgtcaaataaatagttcgaggactgattttgattagccgcgaatgggccactgacggttgatagattcaccggtaatatttcgtcatacagaaattgttagagaaataaaagatttactcctcctgtatgtatttcctatataacctagtttacttgaattttatctggcaattgattgtttaaacttaaatttccgacctaagtaGACTGGATT----TGGGTCCCTTG-TT---CCA--GACG-TCCGCTAG-GAAAT-CAATGGACAG-----GTAACCAC-ACCGCCATGAC-GTA-GGAAAACC-ACTGGCAGTTGCGTGCAT-GGCAAGTG-G-C-T--CCTAAA---AAACTGAA-CTTTAGCTT-CAAATAG-GCGG-A-TCACAG-AATAT-TTT-AAGCGCCCT------ATTA--TCA--GATAGC--CAT-TA-
gi|11 : acCAT-T-A-TAC-TAGTAC--A----CT---AAG-TGCAT--ATT-AAATTG--ACTGTTCAAC-ATTT--TAAAACAA-GGATAAACATTAAT-------C-T--TACGCA-----------TG---------------GA----TT----AC--ATGTTTTAAACGACTGCATTGTGCCAGAGAT-ATATATGTCTCG-AT--CTG-A-----T--TGTGCTCTGAGCTGTGTAC--TCAGGCGCC----TTATCACTGGTCAG--CT-TG--C-AG-
gi|12 : TGAACTTGA-CATCGACCTTCTAAAGCTCACACG-CC----ACTGATGA-TA-TAG--TTTCTA------AATAT-AGA----TC-----A-TCTCATC-AC-TTCTATTGCCTGT-GACGCGAAA-CATGGCTGGTGGTTACC-TGTCGTTGAT-TTA-GCGT
gi|13 : tgT---------------GA----TG----ACCTATGTTTTA--------C-TTG-----GAAAT-AAA-------CG-A---CTGCA-----T--TGTGCTCTA-------TAC--TAAGGCGCC----TTATCA--GGTCAG--CTGTA-TT----CT-------------A-------ATCCAAGCAATTTAA-ATT-GA-TTTA--AA----------TGAAGTCGAACATCAAACTTCTATAGCTCAAACG-CC----ACaacatggaccattcc
gi|14 : CTA------AAAAT-AGA----TGGGGTAA-TCCCGT-----TGCAATTTCCTGT-GATGTGCTATCATGGCTGGTGGTTACC-TGTGATTGA--TTA-GCATGG
gi|15 : ACTGGATTGC-CTG---CCCTTGATT---CCA--GATGCTCCGCTAG-GAAATTCAA-GGACAG-----GTAACCACCACCGCCATGACAGTA-GGAAAACCTACT-GCAGTCTTGCGCAT-AGCAAGTGtctgaatagcagctagggcacctgagtcta
gi|16 : aACTGGATTGC-CTG---CCCTTGATT---CCA--AACGCTCCGCTAG-GAATTTC
gi|17 : TGAT-TTA-GCGTGGCGC-C----C-T---AT-CATCGACAGAGTACCAGT
gi|2 : TTTCGCGCAT-AGCAAGTGCG-CAT--CCTAAAAATAAACCGAAACTTTAGCTT-GAAATAG-GCGG-A-TCA-AA----------------CCAT------TTTA--TCAT-AATA-C--CAC-TA-----C-A-GCGACAT-T-G-AGC-TAGTAC--GTACTCT---AAC-TGCAT--ATT-AAATTG--ACTG---AAC-ATTC--TAAAACAC----------------------C-T-ATGTACA-----------CTATAATCTTACTGATGGA----TG----AC--ATGTTTTA--------C-TTG-----GAAAC-AAA-------CG-A---TTGCA-----T--TGTGCTCTG-------TAT--TCAGGCGCCTTAATTATCA--GGTCAG--CT-CG-TT-AG-CTGTAGCTGCATTCCA-------ATCCAAGCAAGTTAA-ATT-GA-TTT----A---TAATG-C-AAAGTCGAa
gi|2 : CTGAGGA-TAGCACC-TTTCTA------AATAT-AGA----T------AATCTCATC-AC-TTCTATTGCCCGT-GACGCGCAA-CATGGCTGGT-GTTACCTTGTTGTTGAT-TTA-GCGTGGCAC-gttcaggttttgtttcattcttgaagagattttgaataaatgaaaataaatagttcgagactgattttgattagccattaagtgggcctactgcggtttgagattcacggtatatttcgtctacagaaattattagaaatgaaaagatttactcctctgttgtatttcctatattaacctagtttagtttgaatataaacttgactttttctggcaattaatgcttaaaacttgacttcgacttagtacattgtatatatagctgaggatagcacctttctaaatatagataatctcatcacttctattgcccgtgacgcgcaacatggctggtgttaccttgttgttgatttagcgtggcac
gi|3 : tttcgcgcatagcaagtgcgcatcctaaaaataaaccgaaactttagcttgaaataggcggatcaaaccattttatcataataccactacagcgacattgagctagtacgtactctaactgcatattaaattgactgaacattctaaaacacctatgtacactataatcttactgatggatgacatgttttacttggaaacaaacgattgcattgtgctctgtattcaggcgccttaattatcaggtcagctcgttagctgtagctgcattccaatccaagcaagttaaattgatttataatgcaaagtcgagttcaggttttgtttcattcttgaagagattttgaataaatgaaaataaatagttcgagactgattttgattagccattaagtgggcctactgcggtttgagattcacggtatatttcgtctacagaaattattagaaatgaaaagatttactcctctgttgtatttcctatattaacctagtttagtttgaatataaacttgactttttctggcaattaatgcttaaaacttgacttcgacttagtacattgtatatatagAGACTGGATTGC-CTG---CCCTTGATTCTCCCAACAACGCTCC-CTAGCGAATATCAA-GGACAGTACATGTAACCA-CACCGCCA-GACAGTAGGGAAAACCTACT-GCAG-TTCGCCCGC-AAGAAGTGCG-CATGCCCTAATAAT-AACTGAATCTTTGGCTTGGAAATGGAGCGGCA-TCA-AA-AATGGATACAAA--ACCATTTGTTGGTTAATTCAT-AATA-C--CATATGTT-TACAA-GTGACAT-TCGCCACTTAGTAC--A-----T---AAC-TGCCTGAATT-AAATTGACACTG---AACGATTCTTTAAAACAC-G------------T-------C-T-AT-TGAA-----------CT---------------GA-----G----AC--A-GTTTTA--------C-TTGT----GAAAT-AAA-------CG-AC--CTGCA-----T--TGGGCTCTA-------TACAATCAGG-GCC----TTATCA--GGTCAGACTT-TG-TCAAG-CTG------------A-------ATCCAAGCAA--TAA-ATT-GATTTTA--AA---TAATGACTGAAGTCGAACATCGAA--TCTA-AGCTCA-ACG-CC----AAT-AGG---AACACCTTTTCTA------ATTATAAGAT---T------A-TCTC-TC-ACTTTCTA-GGTACGTAGACGCGAAA-CATGTCTGGT-GTTACT-T-TCGTTGATCTTAGGCG-GGCGC-C----TATCTAAT-CATCGACAGC-TA-CAGT
gi|4 : AGGCCGGATTGC-CTG---CCCTTGATT---CCA--GACGCTCCGCTAG-TAAATTCAA-GGACAG-----GTAACAACCACCGCCATGACAGTA-GGAAAACCTACT-GCAGTTTCGCGCAT-AGCAAGTGCG-CAT--CCTAAAAATAAACTGAAACTTTAGCTT-GAAATAG-GCGA-A-TCA-AAGAAT-TGTTT-AA--GCCCC------ATTA--TCAT-ATAA-C--CAT-TA-T--------------------AC-TAGTAC--A----CT---AAC-TGCAA--ATT-AAATTG--ACTG---AAC-ATTC--TAAAACAA-G------------GAGAGACAC-TAATCT-TA-----------CT---------------GA----TGGATTAC--ATGTTTTA--------T-TTG-----GAAAT-AGA-------TGTACCCCTCCG-----TTCTATTTTCTA-------TA---TTAG----C----CTATTA--AGGC----CT-TT-AT-AGTTTG------------A-------AAATAA--AACTTGG-ATT-T--TCTGCCAATATTAATT-GTGAACTTG-ACATCGACTTTCTATAGCTCACACG-CC----ACTGAGGA-T-ATA-G-TTTCTA------AATAT-AGA----TC-----A-TCTCATCAA--TTCTATTGCCCGT-GACGCGAAA-CATGGCTGGTAGTTACC-TGTCGTTGA--TTA-GCGTGTCGC-C----T-T---AT-CATAGACAGCGTACCAGTC
gi|5 : TAGACTGGCTTGC-CTG---CCCTTGATT---CCA--AACACTCCGCTAG-TAATTTCAA-GGACAG-----GTAACCACCACCGCCATGACAGTA-GGAAAACCTACT-GCAGTTTCGCGCAT-AGCAAGTGCG-CAT--CCTAAAAATAAACTGAATCTTTGGCTT-GAAATGG-GCGG-A-TCA-AAGAATGTATAC-AA--TCCAT------GTTA--TCAT-AATA-C--CAT-TA-TATAC-A-GTGACAT-T-G-CAC-CAGTTC--A----CT---AAC-TGCAT--ATT-AAATTG--ACTG---AAC-ATTC--TAAAACAC-G------------T-------C-T-ATGTACA-----------CT---------------GA----TG----AC--ATGTTTTA--------C-TTG-----GAAAT-AAA-------CG-A---CTGCA-----T--TGTGCTCTA-------TAC--TCAGGCGCC----TTATCA--GGTCAG--CT-TG-TC-AG-CTG------------A-------ATCCAATCAATTTAA-ATT-GA-TATA--AA---TAATG-CTGAAGTCGAACATCGAACTTTTATAGCTCAAACG-CC----ACTGAGGA-TAACACC-TTTCTA------ATTAT-AGA-------------------------TCTATTGCCCGT-GGCGCGAAA-CATAGCTGGTGGTTACC-TGTCGTTGAT-TTA-ACTTGTCAC-C----T-T---AT-CATCGACAGCGTACCAGTC
gi|6 : TAGGCTGGATTGC-CTG---CCCTTGATT---CCA--AATGCTCCGCTAG-GAATTTCAA-GGACAG-----GTAACCACCGCCGCCATGACAGTA-GGAAAACCTACT-GCAGTTTCGCGCAT-AGGAAGTGCG-CAT--CCTAAAAGTAACCTGAATCTTTGGCTT-GAAATG----------------AATGTATAC-AA--ACCAT------GTTA--TCAT-AATA-C--CAT-TA-TGTAC-A-GAGACAT-T-G-CAC-TAGTAT--A----CT---AAC-TGCAT--ATT-AAATTG--ACTG---AAC-ATTC--TAAAACAC-G------------T-------C-T-ATGTACA-----------CT---------------GA----TG----AC--ATGCTTTA--------C-TTA-----GAAAT-AAACGAT---CG-A---CTGTA-----T--TGTGC------------AC--TCAGGCGCC----TTATCA--GGTCAG--CTGTA-TT----CT-------------A-------ATCCAAGCAATTTAA-ATT-GA-TTTA--TA---TAATG-CTGAAGTCGAGC------------------------------ACTGAGGA-TAACACC-TTTCTAATTTTTAATAT-AGA----TC-----A-TCTCATC-A--CTTAGATGCCCGT-GACGCGAAA-CATGGCTGGTGGTTACC-TGTCGTTGAT-TAA-GCGTGGCGC-C----T-T---AT-CATCGACAGCGTACCAGT
gi|7 : ACTGGATTGCGCTG---CC-TTGATT---CCA--ACCACGCCGCTAG--AATTTCAA-GGACAG-----GTAACCACCACC---ATGACAGTA-GGAAAA-CTACT-GCAGTTTCGCGCATAAGCAAGTGCG-CAT--CCTAAAAATAAACTGAATCTTTGGCTT-GAAATGG-GCGG-A-TC--AA-GATGTATAC-AA--CACAT------GTTA--TCATAAACA-T--CA--TA-T-TAC-A-GT-ACATCT-G-CAC-CAGT----A----CT---AAC-TG-AT--ATT--AATTG--ACTG---AAC-ATTC---AAAACAC-G------------T---------T-ATGTA-A-----------CT---------------GA----TG----AC--ATGTTTTA--------C-TT------GAAAT-AAA-------CG-A---CTGCA-----T--TGTGCTAT--------TAC--TCAGGCGCC----TTATCA--GGTCAG--TC-TG-TC-AG-CTG--------------------ATGCAA-CAATTTAA-ATTAGA-TATA--AA---TAATG-CTGAAATCGAACATCGAA-TTTTATAGCTCAAACG-CC----ACTGAGGA-TAA-ACC-TTTC-A------ATTAT-A-------------A-TC----------TCTATTGCCCGT-G-CGCGAAA-CATAGCTGGTGGTTACT---TCGTTGAT-TTA-AC-TTTCACTC----T-T---AT-CATCG-CAGCGTAC
gi|8 : CTGAGGA-TAGCACC-TTTCTA------AATAT-AGA----T------AATCTCATC-AC-TTCTATTGCCCGT-GACGCGCAA-CATGGCTGGTGGTTACC-TGTTGTTAAT-CTA-TCGTGGCGC-C----C-G---AT-CATCGACAGCGTACCGG
gi|9 : taatgcaaaatcgagttaagttttttttttcattcttgaagatattctgataaatgaaaataaatagttcaagactgattttgattagccgttaagtgagcctactgcggttgtagattcacggtatatttcgtctacagaaattgttagaaatgaaaagatttactcctctgttgtatttcctatatattaacctagtttagtttgaatataatacttgaatttttctggcaattaattgcttaaaacttgacttcgacttagtacattgtatatatagACTGTATTGC-CTG---CCCTTGATT---CCA--GACGCTCCGCTAG-GAAATTCAA-GGACAG-----GTAACCACCAACGTCATGACAGTA-GGAAAAC---CT-GCAAGTTCGCGCAT-AGCAAGTGCG-CAT--CCTAAATATAAACTGAAACTTTGGCTT-GAAATAG-GC