lowQualScore : 11111111111111111 111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111 111111111111111111111111111111111111111111
lowQualScore : 00000000000000000 1111 22222222 1 1 11 33333333 4444444444444444444444444 11 333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333 111 444444444444 11 1 11 111111 333333333333333333333333333333333333333333 11111 22 111111 111111111 11111111 111111 11111 111
lowQualScore : 5 0 5 77777777777777777 4444 11111111 77 6 0 6666 0 6 5 0 44 888 5 4 55555555 2 1 3 66 0 8 666 2222222222222222222222222 55 33 4 4 8888 777 55 4 6666 111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111 4 222 1 7 44 777777777777 6 7 11 0 3 3 3 3 777777 0 1 4 4 11 4 4 222222 0 666666666666666666666666666666666666666666 44444 3 3 3 7 3 55 4 55 3 7 44 3 11 111111 2 2 3 44 3 3 0 777777777 3 666666 3 7777 44 8 3 77777 3 6 555 44444444 2 66666 99999999999 33 2 4444 111111 44 55 7777 2 9 66 3 3 33333 3 3 3 6 44 44 222 3 3 6 44 44 4 55 4 4 4 4 4 4 1
lowQualScore : . . . ................. .... ........ .. . . .... . . . . .. ... . . ........ . . . .. . . ... ......................... .. .. . . .... ... .. . .... ........................................................................................................................... . ... . . .. ............ . . .. . . . . . ...... . . . . .. . . ...... . .......................................... ..... . . . . . .. . .. . . .. . .. ...... . . . .. . . . ......... . ...... . .... .. . . ..... . . ... ........ . ..... ........... .. . .... ...... .. .. .... . . .. . . ..... . . . . .. .. ... . . . .. .. . .. . . . . . . .
lowQualScore : 7 2 0 11111111111111111 1111 00000000 99 0 0 2222 0 2 0 1 11 888 0 4 11111111 3 1 9 11 6 0 666 0000000000000000000000000 55 55 0 0 5555 000 55 0 0000 666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666 0 555 8 3 66 000000000000 8 3 00 5 6 6 6 6 333333 7 5 0 0 88 0 0 888888 9 111111111111111111111111111111111111111111 77777 6 6 6 3 6 00 8 00 6 5 66 3 99 999999 9 9 1 22 1 1 5 888888888 1 777777 1 5555 22 9 1 77777 1 2 444 22222222 5 22222 00000000000 44 5 8888 111111 33 99 4444 5 9 88 3 8 11111 3 3 3 7 66 66 555 3 3 7 66 66 0 55 4 4 4 4 4 4 4
consensus : NNACTG-TTGGGAAAAGA-AAGAGACA-AT-T--CATATTTTAAATTCAG---TTAA-------CA--TTTTAATTATTT-AACAA-T-A-TCAACGGATGTTC-TCTTCAAGAAN-TGTTT---C-TGAAGTCCAA-AT-CT-ATTGTAATCAAGGCTTT--CCTTGCGT-AGAAA-GTAC-------------C-G-T-CCGGTTTT--CC--C-A-GTTC----AGCAT---A--AA-ACTTCTTCAAT--TTAGA--TAGAACAC---AT---------CGA------T--CTCC--NTT---AAAGTA-A--TTT-CTCC-A-TTTCC-T---C-AATA----T---T---A-G-T-TTT----T-----TC-TATC-TTTNCACTAAGTAGTC-TCCA--AA-A-G--CATTGTAGCCACTTTCACAA-C-ATTTTGTTTGT-TT-CTAC-TA-TCTT--T---AGAGTCGA-CA-AGCG-C-AGCGAT------ATCCTCGTCGTTTAATGA-CC--TA-TCTCGTAAA--TAC---TA-CGTTT--C-GAGACGAC-A-T-ATTGT-TGT-AGTGGAA--CTCTCTAGTGT--T-GCTAACGCTGAAG--ATAC-CTTCAACC-AAT------CAAATT-AC-AGG-A--A-AT-CAAAACTGG-CG----T-C-A----AA-G--CGT--GCGG-GAAAT-----TA-TT-CG---A-----AC-GG-G-----GAATA-G-T-----C-AAAAA--ACTA-TT-C-CC--C---GGGA-A--ATAG----TTTG-TTTAT--TCA-CGAACAGT-GTA-AA-T-A-GCTA-TTTT--A--TC---TC-CTGAACG-T-CA--TA--TA-GGAAA--C-A-TTTT-TACAG-AA-G-TATAATAA
Reference ( gi|2 ) : CTACTG-TTGGGAAAAGA-AAGAGACATATATAACATATTTTAAATTCAA---TTAA-------AA--TTTTAATCATTT-AACAA-T-A-TCAACGGATGTTC-TCTTCAAGAAA-TGTTT---C-TGAAGTCCAA-AT-CTTATTGTAATCAAGGTTTT--CTTTGCGT-AGAAA-GCAC-------------C-A-T-CCAGAATT--CC--C-A-GTTC----AGCAT---A--AA-ACTTCTTTAAT--TTAAATGTAGAACAC---AT---------TGA------T--CTCC-TAT----AAAGTA-A--TTT-CTCC-A-TTTCC-T---C-AATAAAGATC--T---A-G-T-TTT----T-----T----TC-TTTACTCTAAATAGTC-TCCA--AATA-G--CATTGTAGCCACTTCCACAA-C-TTTTTGTTTGT-TT-CTAC-TA-TCTT--T---AGAATTGA-CA-AATG-C-AGCGAT------ATCCTTGTCGTTTCATGAGCCA-TA-TTTCGTAAA--TACATGTACTGTTT--C-AAGACGAC-A-T-ATTGT-TGT-AGTGGAA--CTCTCTAGTGT--T-GCTAACGCTGGAG--ATAC-CTTCAACG-AAT------CAAATT-AC-AGG-A--A-AT-CAAAACTTG-CG----T-C-A----AA-G--CAT--GCAG-GAAAT-----TA-TT-CG---A-----AA-GG-G-----GAATA-G-T-----C-AAAAA--ACTA-TT-C-CC--T---GGGA-A--ATAG----TTTG-TTAAT--TCA-CGAACAGT-GTA-AA-T-A-GCTA-TTTT--A--TC---TC-CTGAACG-T-CA--TA--TA-GGAAA--C-A-TTTT-TACAG-AA-G-TATAATAA
gi|17 : ACTG-TTGGGAAAAGA-AAGA--------TA-CATATCTTAAATTCAA---TGAA-------CA--TTCAAATTGTTT-AACAC-T-A-TCAACGGATGTTC-TCCGT-------TGTTT---C-TGAAGTTCAA-CT-ATTATTGTAATCAAGATTTT--CCTTGCGT-AGAAA-GCAC-------------C-G-T-CCGG
gi|18 : tcaACTG-TTGGAAAAAGA-------------TA-CATATTTTAAATTCAA---TTAACATCTTAAA--TTTTAATTATTT-AAAAA-T-A-TCAACGGATGTTC-TCTTCAAGAAA-TGTTT---C-TGAAATCCAA-AT-AGAATTGTAGCCAttt
gi|21 : tcaACTG-TTGGGAAAA-A-AAGAAAGG-AT-T--CATGTTTTAAATTCAA---TTAA-------ctttc
gi|9 : ttcaCTG-TTGGGGGAAAA-AA-AGATA-------CATATTATAAATTCAG---TTAA-------CA--TTTTAATTATTT-AACAA-T-A-TCAACGGATGTTC-TCTTCAAGAAC-TGTTT---C-TGAAGTCCAA-AT-C------TAATTAACGCTTT--CCTTGCGT-AGAAA-GTAC-------------C-G-T-CCGGTTTT--CC--C-A-TTTC----AGCAT---A--AA-ACTTCTTCAAT--TTAAA--TAGAA-GC---------------------------------------------A--TTT-CTCT-A-CTTCC-T---C-AATA---TTA--T---A-G-T-TTT----T-----CCATATC-TTTCCACTAAATAGTC-TCCA--AA-A----------AGCCACTTTTACAA-C-ATTTTGTTTGT-TT-CTAC-TA-TCTTTAT---ATAGTCGA-CA-AGCG-C-AGCAAT------ATCCTC-TCGT------AAC--------TCGTAAA--TA----TACCGTTT--C-GAGACTAC-A-T-ATTGT-TGT-AGTGGAA--CTCTCTAGTGT--T-ACTAACGCTGAGG--ATAC-CTTCAACC-AAT------CAAATT-AC-AGca
gi|1 : tatCTGCTTGTGAAAAGA-AA-AGATACAGAT--CA-GTTTTAAATTCAGGTTTTAG-------AA--TTTTAAATATTT-AACAA-T-A-TCACCGGATGTT--TCTTCA-GAAC-TGTTTTCTC-TGAAGTCAGAGATGCTAATT--ACTGGGGGCTTTTCCTTTGCGTGAGGAA--TAC-------------C-G-CGTCAGGTTT--TCT-C-A-GTTC----AGCATTGGA--TATACTTCTTCAGTGTTCAGA-----AACAC---ATGATATCGACCGAA-----T--CTCC-GTTG---AAAGTA-A--TTTTCTCT-AGTTTCCGT---C-A-TA-----T--T---A-G-T-TTT----------------C-CATAATCT-------T-TCCA--AA---G--CACT-------TTTACACAAAC-ATTTTGTTTGTGTTACTAC-TAGTCTT--TTATAGG-TCGAGCACAGCG-CGAGCGATGAATATATCCTAGCC------TG--CCG-TAACTCCGTAAA--TACC----CCGTTTTGC-GAGACGACCA-T-ATTGTCTGTCAGTGGAAGACTCTCTAGTGTAATAGCTAACGCTGGAAGTATAC-CTTCAACC-AATA-----CAAAGT-AA-AGG-A--A-AT-CAAAACTGG-CG----TGC-A----AA-G--CGT--GCGG-GAAAT-----TA-GTGCG---A-----AC-GG-G-----GAATA-G-T-----C-AAAAA--AATA-TT-C-TC--C---GGG--A--ATAG----TTTG-TTATTG-TCA-CGAACTGT-GTA-AA-T-A-GCTA-TTTTTAA--TCCTTTCTCTGAACG-T-CA--TA--TT-GGAAA--C-A-TTTT-TACAGAAA-G-T-TAATAA
gi|10 : CTG-TTGGAAAAGGATAAGATCCATAT--------TTTTAAAT-CAG---TTAA-------CA--TTTTAATTATTTGAACAA-A-AATCA-CGGATGTTC-TCTTCAAGAC--TGTTT---C-TGAAGTCCAA-AT-CT------AATTAACGCTTT--CTT-ACGTTAGAAA-GTCC-------------C-G-T-CCGGT-TT--TC--C-A-GTTC----AGCAT---A--AA-A-TTCTTCAAT--TTAC-----GAACACTCGAC---------CGA------T--CTCC--ATTTGGAAAGTA-A--TTT-CTCT-A-TT--C-T---C-AA---ATATTAGT---A-G-T-TATCCA-T-----A----TC-TTC-CACTAAATAGTCCTTCA--AA-------A----AGCCACTTTTACAA-C-ATTTTCTTTGT-TT-CTACGTA-TCTT--T---a
gi|4 : tcatTG-TTGGGAAAAAA-GA-AGA---ATAC----TATTTTAAATTCAGC--TTAA-------AACATTTTA-TTATTT-AACAA-CCA-TCAACGGATGATC-TCTTCAAGAAACTGTTT---C-TGAAGTCCAA-AT-CT------AAT-AACGCTTT--CCTTTCGT-AGAAAAGTAC-------------C-G-T-TCGGTTTTTTCC--C-A-GTTC----AGCAT---ATAAA-ACTTCTTCAAT--TTAGA-----AACAC---AT---------CGACCGA--T--CTCC--ATTGA-AAAGTA-AATTTC-CTCT-A-TT-CC-T---C-AA---ATATTA-T---AAG-T-TTT----T-----T----CCATTTCCACTAAATAGTCCTCCA--AA-------A----AGCCACTTTTACAA-CATTTTGGTTTGT-TT-CTAC-TA-AAT---------ACTCGA-CA-G-CA-C-AGCGAT------ATCCTC----------------------TCGTAAA--TAC------CGTTT--C-GAGAC-AC-A-TTAGTGT-TGT-AGTGGAA--CTCTCTAGTGT--T-ACTAACGCTGAAG--ATAC-CTTCAACC-AAT------CAAATT-AC-AGGAA--A-AT-CAAAACTGG-CGC---T-CAA----AA-G--AGT--GCGG-GAAAT-----TATTT-CG---A-----AC-GGTG-----GAATA-G-T-----C-AAAAA--ACTA-TT-C-TC--C---GGGGCA--ATAG----TTTG-TTTAT--TCACCGAACTGT-GT--AA-T-A-GCTATTTTT--A--TCT--TC-TTGAACGCT-CACCTA--TA-GGAAA--C-A-TTTTGTACAG-AAGG-TATAATAtagcgagcgaagcgagact
gi|3 : catctTGGGAAAAGA-AAGATACACAT--------TTTAAAATTCAG---TTAA-------CA--TTTTAATTATTTTAACA--T-A-TCA-CGGATGTTC-TCTTCAAGAAC-TGCTT---C-CCAAGTC-AA-AC--------TAATTAACGCTTT--CCTTGCGT-AGAAC-GTAC-------------CCG-T-CCGGTTTT--CCACC-A-GTTTTTCAAGCAT---A--AA-ACTTTTTCAAT--TTAGACTTA---CAC---AT---------CGACCGAGAT--CTCC--ATTG--AAAGTG-A--TTT-CTCTTA-TTTCC-T---CCAGTAT---TA--T---A-GGT-TTT----T-----TCCTATC-TTT-CACTAAATAGTC-TCCA--AA-------A----AGCCACTTT-ACAAAC-ATTTTGTTTGT-T--CTAA-TA-TCTT--T---ATA-TCGA-CA-AGCGGC-AACGAT------ATC--TCTCGT------AGC--------TCGTAAACTTCTAT-TACTGTTT----GAGACGAC-AAT-ATTGT-TGT-AGTGGAA--CTCT-TAGTGT--T-ACTAACGCTGAAG--ATAC-CTTCACC--AAT------CAAATTTAC-AGT-A--A-ATTCAAAACTGG-CGG---T-C-A----AA-GTCCGT--GC-G-GAAAT-----TA-TT-CG---A-----TA-CG-G-----GAATA-G-T-----C-AAAAA--ACTA-TT-T-CC------GGGG-A--ATAGT---TTTG-TTTATTCTCA-CGAACAGT-GTA-AA-TAA-GCTA-TTTT--A--TC---TC-CTGAACG-TCCA--TA--TACGGAAA--A-A-TTTT-TACAG-AA-G-TATAA
gi|5 : cggTTT-AACAAGT-AATCAACTGATGTCCCTCTTCAAAGAA-TGTTT---CATGGAGTCCGA--T-CTTTTTGTA-TCAAGGTTTT--CATTGCGT-AGAAA-GCAC-------------C-A-T-CC-GTTTT--CC--CAA-GTCC----AGCAT---A--AA-AA--CTTTAAT-------TATAGAAC------T---------CGA------T--CCCCGTA-----AAAGTA-AT-TTT-CTCC-A-TGTCT-T---C--ATA--------T---A-G-T-TTC----T-----TCATATC-TTTACATGAAGT--CC-TCCAATAATA----CATTATAG-CACTTTCACA-------CTAGTTGT-TT-CTAC-TA-TCTT--T---AGAATCGA-CA-GCTG-C-A-CAAT------ATCCCCGTCG--TAATGACCC---A-TCTCGTAAA--TACTTGT----TTT--CGAAGACGAC---T-ACTA--TGT-AGTG------------------T-GCT-ACGCTGAAG--ATAC-CATCACC---AT------CAAATT-AC-AGG-A--A-AT-CAAA------CG----T---------G-G--C----GC-G-GAGAT-----TA-TT-TGAACA-----AA-AA-G-----AAATA-G-TTTCCCC-AAAAAACACTA-TT-C-GC--T----GGA-A--ATAA----TTTG-TTTA---TCA-CGAACTGT-TAA-AA-T-A-GCTA--ATT--A--TC---TC-TTGAACG-T-CA--TA--TA-GGAAAACC-A--TTT-TA-AG-AA-ATTATAAata
gi|7 : atA-AT-CTAATTTTAATCAAGGATAT--ATTTGCGT-AGAAA-ATAC-------------G-G-C-CCGATCTT--CC--C-A-GTTC----AGCAT---A--AA-ACTTGTTTAAT--TTG------GAACAA---AT---------CGA------T--CTCC-CTTC---AAAGTT-A--TTT-TTCC-A-TTACA-T---T-AATA--------T---A-G-T-TTC----TCCATAT----TT-TTCACT--AAGTAGTT-ACCA--AATA-T--CATTATAGTCATTTTCACAA-C-TTCTTGTTT-T-TT-CTGC-TA-TCTT--T---AGAGTTGA-GA-AGCG-A-AGCGAT------ATCTT---CGTTTAATGA-CTAGTA-TCTCAT-----------TA-------------ACGAT-A-T-ATTGT-TGT-AGTGGAA--CTTCCCAGTAT--T-CCTAAAGCTGAAA--ATAA-CTTCAGCC-AAT------CAAATT-AT-AAG-G--A-AT-CAAAATTGG-TG----T-C-G----AA-G--CGG--GCGG-AAAATTACAGTA-TT-CG---A-----AC-CA-G-----GAATA-G-T-----C-AAAAC--ACTA-TT-T-TC--T---AGTA-T--ATAA----TTTG-TTTAT--TCA-CCAACAG--GAA-AA-A-ACGC-A--TTT--A--TT---TC-CTGAATG-T-CA--TA--TA-AGAAA--C-A-ATTT-TATAG-AA-G-TGTAATAAa
gi|8 : cATTGCAATCGAGGCTAT--CTTTGCGT-AGAAA-ATACGGTCTGATATTCCC-AGT-TCAGGGTT--TCT-C-A-GTTC----AGCAT---A--AA-ACGTCTTTA----TTA----TAGAAAAC---AT---------CGA------T--TTCC-CTT----CAAATT-A--TTT-GTCC-A-ATTCC-T---C-AATAT-GATC--TCTCA-A-TATCT----T-----T----TC----ACTATG--CAGTT-TCCA--AAGA-AAACATTATAGCCATTTTCACAA-C-TTTTGGTT-GT-TT-TAAC-TA-TCTT--C---AGAGTTAG-GA-AACA-C-AGCGAT------AGCTTCATCATTTAATGACTCT-TA-TCTTATAAA--CAC------TGTTT--T-AAGACGAC-A-T-ATTGT-TGT-AGTGGAA--CTGCC-AGTGT--T-GCTGATGCTGAAG--ATAC-CTTCAACC-AAT------CAAATT-AG-TAG-A--A-AT-CAAAACCCA-TC----T-C-A----AA-G--CGT--GTGG-GGGTT-----TA-TT-CG---A-----AC-GG-G-----GAATA-C-T-----C-AAAAA----TA-TT-A-TC--T---GAGA-A--ATAGGTTTTTTT-TTTAT--CCA-CGAACAGT--TAGAA-T-A-CCTC-TTTT--A--TC---TA-TTGTACG-T-CA--TA--Ta
gi|15 : gTTGCGT-AGATA-ATAC-------------G-G-T-CC-GATTT--TC--C-AAGTTC----AGAAT---A------CTTGTCTTCT--TTAA-TCTAGAACAC---AT---------CGA------T--CTCC-TTTT---AAAGTA-A--TCT-CTTA-A-TTTCC-T---C-AATA--------T---A-G-T-CTC----T-----CCATATC-TTTTCACTAAGTGGTT-TCCA--AAAAAG--CATTGTAGCCCTTTTCACAA-C-ATTTTGTTTAT-TT-CTAC-TA-TCTT--C---AGAGTTGA-TA-AGCG-C-
gi|6 : TT--CT--C-A-GTTG----AGCAT---A--AA-CCTTCTTTA----TTA----TAGAAAAC---AT---------CGA------TTGCTC----------AAATATC--TTT-GTCC-A-TTTTT-TTTTC-AATA--------T---A-A-T-TTCACCAT-----A----TC-TTTTCACTAAGTAGTT-TCAG--AA-A-A--CGTTATAGCCATTTTTACAA-C-ATTTCGTTT-T-TT-CTAC-TA-TCTT--T---AGAGTCGA-CA-AGCG-C-AGCGAT------ATTTTCGTCATTTAACGACTCG-TA-TCTCATA--------TATAGTGTTC--T-GACACGAC-A-T-ATTGT-TGT-AGTGGAA--CTGCC-AGTGT--T-GCTGATGCTGAAG--ATAC-CTTCAACC-AAT------CAAATT-AC-TGG-A--A-AT-CAAATCTAA-CG----T-C-A----AA-T--CGT--GAGG-GAAAT-----TA-TT-CT---A-----AC-GG-G-----GAATA-G-T-----C-AAACA--TATAGTT-T-AC--TAACGGGG-A--ATAG----T
gi|18 : tctgattgtaattgcgtagaaaatatggtccgattgttttcccagttcatggt-TCCA--AATA-G--AATTGTAGCCACTTTCcaaacatataatttacacatctgagaaatatatttttttttaattcacgaacagttagaatacctcttttatctactgtacggcatat
gi|11 : tcaactgttggaaaaagatacatattttaaattcaattaacatcttaaattttaattatttaaaaatatcaacggatgttctcttcaagaaatgtttctgaaaCCA--AATA-G--AATTGTAGCCACTTTCCTAA-C-TTTTTGTTTGT-TT-CTAC-TA-TCTT--T---AGAATCGA-CA-AACG-C-AGCGAT------ATCCTCGTCGTTT--------A--A-TCTCGTAAA--TGC------TGTTT--C-GAGACGTC-A-T-GTTGTACAT-AGTGGAA--CTCTCTAGTGT--T-GCTAACGCTGAAT--ATATACTTCAACT-ATT------CAAATT-AC-AGG-A--A-AT-C-AAACTGG-CG----T-C-A----AA-G--CGT--GCGG-GAAAT-----TA-TT-CG---A-----AC-GG-G-----GAATA-G-T-----A-AAAAA--ACTA-TT-C-TC--T---GGGA-A--ATA
gi|12 : -TTTCGTAAA--TAC---------CT--C-GAGACGAC-A-T--TTGT-TGT-AGTGGGA--ACCTCTAGTGT--T-ACTAACGATGAAG--ATAC-CTTCAACC-AAT-------AAATT-AC-AGG----A-AT-C-AAACTGG-CGT---T-C-ATCTGAA-GC-CAT--GCAG-GAAAT-----TA-TT-CG---A---------C-G-----GAATA-GAT-----CAAAAAA--ACTA-TT-C-TC------GGGG-A--ATAG----TTTGTTTATT--TCA-CGAAT-GTAGTA-AA-T---GCTATTTTT--A--TC---TC-CTGAACG-T-CA--TATTTT-GGAAA--C-ATTTTT-TACAG-AA-G-TATAATAt
gi|13 : cATTGTTT--T-CAGACGAC-A-T-ATAAT-TGC-AGTGGAA--CTCCCCAGTGT--T-GCTAAAGCTGAAA--ATAA-CTTCAACC-AAT------CAAATT-AC-AGG-A--A-AT-CAAAACTGG-TG----T-C-A----AA-A--CGT--GCAG-GGAAT-----TA-TT-CG---A-----AC-GG-G-----GAA-A-G-T-----C--AAAA--ATTA-TA-T-TC--T---AGGA-A--ATAG----TTTG-TTTAT--TCA-CAAAGAGTAATA-AT-T-A-GCTC-TATT--A--TC---TC-CTGAACG-T-CA--TA--TA-GGAAA--CTT-TTTT-TACAG-AA-G-TGTAATAA
gi|14 : AACGCTA-AG--ATAC-CTTCAACCCAACTGGTTGCAAAGT-AC-AGG-ACAG-AT-CACAACTGGGCAGAATT-CGA----AA-G--CATTGGCGGAGGAAT-----GA-CG-CG---ACCCTCGA-GG-GACGGAGAATA-G-T-----C-ATAAA--ACTA-TT-T-CTCTT---GGGA-A--ATAG----TTTG-TTTAT--TCA-CGAA-AGT-G-A-AA-A-A-GCTA-TTTT--ACTTCT--TC-CTGAACG-TCCA--TA--TA-GAAAA--
gi|16 : tattgaccggtcagagattttctcatactgCAACC-AAT------CAAGTT-AC-AGG-A--A-AT-CAAAACTAG-CG----T-C-A----AA-G--AGT--GCGG-GAAAT-----TA-TT-CG---A-----AA-GG-G-----GAATA-G-T-----A-AAAAA--A--------------------A-AT-ATAG----TTTG-TTTAT--TCA-CGAACTGT-GTA-AA-T-A-GCTA-TTTT--A--TC---TC-CTGAACG-T-CA--TA--TA-GGAAA--C-A-TTTT-TACAG-A-----ATAATA
gi|20 : AATT-ACCAGG-A--AGAT-CAAA-CTGGGCG----T-C-A----AAAG--CGT--GCGG-GAAAT------A-TTACG---A-----AACGG-G-----GAATAAG-T-----A-AAAAT--ACTA-TT-CTCT--T---GGGA-AATATAG----TTCG-T
gi|4 : aggct-GG-T-----GAATA-----------AACAA--ACTA-TTGC-CC--C---GGAG-A--ATAG----TTTT-TTGAC--T
gi|3 : catcttgttgggaaaaaagaagaatactattttaaattcagcttaaaacattttattatttaacaaccatcaacggatgatctcttcaagaaactgtttctgaagtccaaatctaataacgctttcctttcgtagaaaagtaccgttcggttttttcccagttcagcatataaaacttcttcaatttagaaacacatcgaccgatctccattgaaaagtaaatttcctctattcctcaaatattataagttttttccatttccactaaatagtcctccaaaaagccacttttacaacattttggtttgtttctactaaatactcgacagcacagcgatatcctctcgtaaataccgtttcgagacacattagtgttgtagtggaactctctagtgttactaacgctgaagataccttcaaccaatcaaattacaggaaaatcaaaactggcgctcaaaagagtgcgggaaattatttcgaacggtggaatG-A-----GAATA-A---------ACAAA--ACTA-TT-C-CC--C----GGA-A--ATAG----TTTT-TTGAC--Tgaactgtgtaatagctatttttatcttcttgaacgctcacctataggaaacattttgtacagaaggtataata
gi|12 : cggtgggaaaagaaagatacacattttaaaattcagttaacattttaattattttaacatatcacggatgttctcttcaagaactgcttcccaagtcaaactaattaacgctttccttgcgtagaacgtacccgtccggttttccaccagtttttcaagcataaaactttttcaatttagacttacacatcgaccgagatctccattgaaagtgatttctcttatttcctccagtattataggttttttcctatctttcactaaatagtctccaaaaagccactttacaaacattttgtttgttctaatatctttatatcgacaagcggcaacgatatctctcgtagctcgtaaacttctattactgtttgagacgacaatattgttgtagtggaactcttagtgttactaacgctgaagataccttcaccaatcaaatttacagtaaattcaaaactggcggtcaaagtccgtgcggaaattattcgatacgggaat-G-----AAATA-----------AACAA--ACTA-TT-C-CC--C---GAG--A--ATAG----TTTT-TTacgaacagtgtaaataagctattttatctcctgaacgtccatatacggaaaaatttttacagaagtataaata
gi|19 : ctttcgtaaatacctcgagacgacatttgttgtagtgggaacctctagtgttactaacgatgaagataccttcaaccaataaattacaggaatcaaactggcgttcatctgaagccatgcaggaaattattcgacggaatagatcaTAG----TATG-TTTCT--TTA-TGAACAGC-AAA-AACT-A-GCTC-TTTT--G--TC---TC-CTGAGCG-T-CA--AA--TA-GGAAA--T-A-TTTT-TACAG-AA-G-TGTAATAAacgaatgtagtaaatgctatttttatctcctgaacgtcatattttggaaacattttttacagaagtataata
gi|6 : aagaaacatgcttcc----TTTT-TTAAT--TCA-CGAACAGT--TAGAA-T-A-CCTC-TTTT--A--TC---TA-CTGTACG-G-CA--TA--Tatattg
Alignments
lowQualScore : 55555555555 1111111 333333333 222222222222222 11111111 1111111 222222222 222222222 111111 222 1 222222222222 33 3333333333333 111111 5555555555555555 444444444 111111 1111 1111111111 111
lowQualScore : 5 2 4 55 11111111111 777 777 6666666 8 4 4 4 4 4 0 55 777 4 4 999999999 1 1 44 3 3 3 3 44 555 44 000000000000000 55 3 33333333 9999999 55 666 55 3 1 55 1 999999999 666 222222222 444444 55 3 555 3 88 3 3 3 3 666 0 333333333333 666 55 00 3 4 7 3 9999999999999 3 555 3 3 3 3 3 3 3 666666 2 3 3 3 3 111111 4 333 3333333333333333 3 7777 222222222 3 55555 3 6 6 3 44 3 44 3 3 3 3 2 111111 2 2 2 33 2 2 5 4444 2 5 6666 2 66 33 2 77777 2 9999999 5 2 777 5555 2 2 2 77777 2 33 0 2 5555555555 2 66 8888 3 88 3 2 99999 3 3 3 6 44 44 111 3 3 6 44 44 3 55 4 4 4 4 4 4 0
lowQualScore : . . . .. ........... ... ... ....... . . . . . . . .. ... . . ......... . . .. . . . . .. ... .. ............... .. . ........ ....... .. ... .. . . .. . ......... ... ......... ...... .. . ... . .. . . . . ... . ............ ... .. .. . . . . ............. . ... . . . . . . . ...... . . . . . ...... . ... ................ . .... ......... . ..... . . . . .. . .. . . . . . ...... . . . .. . . . .... . . .... . .. .. . ..... . ....... . . ... .... . . . ..... . .. . . .......... . .. .... . .. . . ..... . . . . .. .. ... . . . .. .. . .. . . . . . . .
lowQualScore : 0 9 4 66 33333333333 888 888 2222222 9 4 4 4 4 4 8 44 888 4 0 999999999 2 4 66 3 3 3 3 66 888 66 888888888888888 00 6 22222222 5555555 00 444 00 6 3 00 3 888888888 444 333333333 111111 00 5 999 6 66 6 6 6 6 444 9 888888888888 444 00 55 6 5 3 3 0000000000000 3 888 6 3 3 3 3 3 3 111111 3 3 3 3 3 555555 0 000 4444444444444444 6 7777 555555555 3 00000 3 7 7 3 66 7 66 3 1 1 1 9 111111 7 7 9 99 9 9 7 6666 9 7 1111 9 88 99 9 11111 9 3333333 7 9 999 1111 9 9 9 11111 9 99 1 9 4444444444 9 88 9999 1 55 1 8 99999 1 1 1 2 22 22 555 1 1 2 22 22 6 00 0 0 0 0 0 0 4
consensus : NNACTG-TTGGGAAAAGA-AA-GA-ACA--T----CATATTTTAAATTCAG---TT---AACAT-------TTTAATTATTT-AAC-AA-T-A-TCAACGGATGTTC-TCTTCAAGAAN-TGTTT---C-TGAAGTCCAA-AT-CT-A-TTGTAATCAAGGCTTTCC--TTGCG-T-AG-AAAGTACC-G--TCCG---G--T---------------TTTCC--C-AG--------TTC-------AGC--AT---AA--A-ACTTCTTCAAT--TTAGA--T--AGAACAC---AT---------CGA------T--CTCCNTT---AAAGTA-A--TTT-CTCC-A-TTTCC-T---C-AATA-----T--T---A---GT--TTTTCCA-TA-TCTTTCCACTAAGTAGT-CTCCAA-A---A--GCATTGTAGCCACTTT-CACA---ACATTTT-GTTTGT-TT-CTAC-TA-TC-TT--T---AGAGTCGA-CA-AGCG-C-AGCGAT------ATC-CTCGTCGTTTAATGA-C---TATCTC-GTAAA----TAC---T--C-G-TTT--CG-AGACGAC-A-TATTGT-TGT-AGTGGAA--CTCTCTAGTGT--T-GCTAACGCTG-AAG-ATAC-CTTCAACC-AAT------CAAATT-AC-AGG-A--A-AT-CAAAACTGG-CG----T-C-A----AA-G--CGT--GCGG-GAAAT-----TA-T-------T-CG-A---AC---GG-GGAAT-AG-T-----C-AAAAA--ACTA-TTC-TC---C--GGGA-A--ATAG----TTTGTTTA-T--TCA-CGAACAGT-GTA-AA-T-A-GCTA-TTTT--A--TC---TC-CTGAACG-T-CA--TA--TA-GGAAA--C-A-TTTT-TACAG-AA-G-TATAATAA
Reference ( family-1142 ) : NNACTG-TTGGGAAAAGA-AA-GAGACA-AT-T--CATATTTTAAATTCAG---TT---AACAT-------TTTAATTATTT-AAC-AA-T-A-TCAACGGATGTTC-TCTTCAAGAAN-TGTTT---C-TGAAGTCCAA-AT-CT-A-TTGTAATCAAGGCTTTCC--TTGCG-T-AG-AAAGTACC-G--TCCG---G--T---------------TTTCC--C-AG--------TTC-------AGC--AT---AA--A-ACTTCTTCAAT--TTAGA--T--AGAACAC---AT---------CGA------T--CTCCNTT---AAAGTA-A--TTT-CTCC-A-TTTCC-T---C-AATA-----T--T---A---GT--TTTTTC--TA-TCTTTNCACTAAGTAGT-CTCCAA-A---A--GCATTGTAGCCACTTT-CACA---ACATTTT-GTTTGT-TT-CTAC-TA-TC-TT--T---AGAGTCGA-CA-AGCG-C-AGCGAT------ATC-CTCGTCGTTTAATGA-CC--TATCTC-GTAAA----TAC---TA-C-G-TTT--CG-AGACGAC-A-TATTGT-TGT-AGTGGAA--CTCTCTAGTGT--T-GCTAACGCTG-AAG-ATAC-CTTCAACC-AAT------CAAATT-AC-AGG-A--A-AT-CAAAACTGG-CG----T-C-A----AA-G--CGT--GCGG-GAAAT-----TA-T-------T-CG-A---AC---GG-GGAAT-AG-T-----C-AAAAA--ACTA-TTC-CC---C--GGGA-A--ATAG----TTTGTTTA-T--TCA-CGAACAGT-GTA-AA-T-A-GCTA-TTTT--A--TC---TC-CTGAACG-T-CA--TA--TA-GGAAA--C-A-TTTT-TACAG-AA-G-TATAATAA
gi|1 : CTGCTTGTGAAAAGA-AAAGATACA-GA-T--CA-GTTTTAAATTCAGGTTTT---AGAAT-------TTTAAATATTT-AAC-AA-T-A-TCACCGGATGTT--TCTTCA-GAAC-TGTTTTCTC-TGAAGTCAGAGATGCT-A-AT-TACTGGGGGCTTTTCCTTTGCG-TGAG-GAA-TACC-GCGTCAG---G--T---------------TTTCT--C-AG--------TTC-------AGC--ATTGGAT--ATACTTCTTCAGTGTTCAGA-------AACAC---ATGATATCGACCGAA-----T--CTCCGTTG--AAAGTA-A--TTTTCTCT-AGTTTCCGT---C-A-TA-----T--T---A---GT--TTTCCA--TAATCTTTCCA-----------------A---A--GCA---------CTTT-TACACAAACATTTT-GTTTGTGTTACTAC-TAGTC-TT--TTATAG-GTCGAGCACAGCG-CGAGCGATGAATATATC-CTAGCC------TGC-CG--TAACTCCGTAAA----TAC---CC-C-G-TTTTGCG-AGACGACCA-TATTGTCTGTCAGTGGAAGACTCTCTAGTGTAATAGCTAACGCTGGAAGTATAC-CTTCAACC-AATA-----CAAAGT-AA-AGG-A--A-AT-CAAAACTGG-CG----TGC-A----AA-G--CGT--GCGG-GAAAT-----TA-G-------TGCG-A---AC---GG-GGAAT-AG-T-----C-AAAAA--AATA-TTC-TC---C--GGG--A--ATAG----TTTG-TTA-TTGTCA-CGAACTGT-GTA-AA-T-A-GCTA-TTTTTAA--TCCTTTCTCTGAACG-T-CA--TA--TT-GGAAA--C-A-TTTT-TACAGAAA-G-T-TAATAA
gi|10 : CTG-TTGGAAAAGGATAA-GA------T-C--CATATTTTTAAATCAG---TT---AACAT-------TTTAATTATTTGAACAAA-A-A-TC-ACGGATGTTC-TCTTCAAG-AC-TGTTT---C-TGAAGTCCAA-AT-C-------TAATTAACGCTTT-C--TTACGTT-AG-AAAGTCCC-G--TCCG---G--T---------------TTT-C--C-AG--------TTC-------AGC--AT---AA--A-A-TTCTTCAAT--TTA-------CGAACACTCGAC---------CGA------T--CTCCATTTGGAAAGTA-A--TTT-CTCT-A-TT--C-T---CAAATA-----T--T---A---GTAGTTATCCA-TA-TC-TTCCACTAAATAGTCCTTCAA-A---A---------AGCCACTTT-TACA---ACATTTT-CTTTGT-TT-CTACGTA-TCTTT--T---AG-------CG-AGCG-A-AGCGAa
gi|11 : tcatCCAA-AT--A--GAATTGTAGCCACTTT-CCTA---ACTTTTT-GTTTGT-TT-CTAC-TA-TC-TT--T---AGAATCGA-CA-AACG-C-AGCGAT------ATC-CTCGTCGTTTAAT----------CTC-GTAAA----TGC---T----G-TTT--CG-AGACGTC-A-TGTTGTACAT-AGTGGAA--CTCTCTAGTGT--T-GCTAACGCTG-AAT-ATATACTTCAACT-ATT------CAAATT-AC-AGG-A--A-AT-C-AAACTGG-CG----T-C-A----AA-G--CGT--GCGG-GAAAT-----TA-T-------T-CG-A---AC---GG-GGAAT-AG-T-----A-AAAAA--ACTA-TTC-TC---T--GGGA-A--ATAgact
gi|12 : TTTC-GTAAA----TAC---C--------T--CG-AGACGAC-A-T-TTGT-TGT-AGTGGGA--ACCTCTAGTGT--T-ACTAACGATG-AAG-ATAC-CTTCAACC-AAT-------AAATT-AC-AGG----A-AT-C-AAACTGG-CGT---T-C-ATCTGAA-GC-CAT--GCAG-GAAAT-----TA-T-------T-CG-----AC------GGAAT-AGAT-----CAAAAAA--ACTA-TT--CT---C--GGGG-A--ATAG----TTTGTTTATT--TCA-CGAAT-GTAGTA-AA-T---GCTATTTTT--A--TC---TC-CTGAACG-T-CA--TATTTT-GGAAA--C-ATTTTT-TACAG-AA-G-TATAATAt
gi|13 : c-G-TTT--TC-AGACGAC-A-TATAAT-TGC-AGTGGAA--CTCCCCAGTGT--T-GCTAAAGCTG-AAA-ATAA-CTTCAACC-AAT------CAAATT-AC-AGG-A--A-AT-CAAAACTGG-TG----T-C-A----AA-A--CGT--GCAG-GGAAT-----TA-T-------T-CG-A---AC---GG-GGAA--AG-T-----C--AAAA--ATTA-TAT-TC---T--AGGA-A--ATAG----TTTGTTTA-T--TCA-CAAAGAGTAATA-AT-T-A-GCTC-TATT--A--TC---TC-CTGAACG-T-CA--TA--TA-GGAAA--CTT-TTTT-TACAG-AA-G-TGTAATAA
gi|14 : attAACGCT--AAG-ATAC-CTTCAACCCAACTGGTTGCAAAGT-AC-AGG-ACAG-AT-CACAACTGGGCAGAATT-CGA----AA-G--CATTGGCGGAGGAAT-----GA-CGCGACCCT-CG-AGGGAC---GG-AGAAT-AG-T-----C-ATAAA--ACTA-TTT-CT---CTTGGGA-A--ATAG----TTTGTTTA-T--TCA-CGAA-AGT-G-A-AA-A-A-GCTA-TTTT--ACTTCT--TC-CTGAACG-TCCA--TA--TA-GAAAA--
gi|15 : tattgaccggtcagagattttctcatactg--TTGCG-T-AG-ATAATACG-G--TCCG---A--T---------------TTTCC--A-AG--------TTC-------AGA--AT---ACTTG-TCTTCTTTAAT--CTAGA--------ACAC---AT---------CGA------T--CTCCTTTT--AAAGTA-A--TCT-CTTA-A-TTTCC-T---C-AATA-----T------A---GT--CTCTCCA-TA-TCTTTTCACTAAGTGGT-TTCCAA-A---AAAGCATTGTAGCCCTTTT-CACA---ACATTTT-GTTTAT-TT-CTAC-TA-TC-TT--C---AGAGTTGA-TA-AGCG-C-
gi|16 : CAACC-AAT------CAAGTT-AC-AGG-A--A-AT-CAAAACTAG-CG----T-C-A----AA-G--AGT--GCGG-GAAAT-----TA-T-------T-CG-A---AA---GG-GGAAT-AG-T-----A-AAAAA--A-------------------A-AT-ATAG----TTTGTTTA-T--TCA-CGAACTGT-GTA-AA-T-A-GCTA-TTTT--A--TC---TC-CTGAACG-T-CA--TA--TA-GGAAA--C-A-TTTT-TACAG-A-----ATAATA
gi|17 : ACTG-TTGGGAAAAGA-AA-GATACA---------TATCTTAAATTCAA---TG---AACAT-------TCAAATTGTTT-AAC-AC-T-A-TCAACGGATGTTC-TCC------GT-TGTTT---C-TGAAGTTCAA-CTATT-A-TTGTAATCAAGATTTTCC--TTGCG-T-AG-AAAGCACC-G--TCCG---G--T---------------TT
gi|18 : tcaACTG-TTGGAAAAAGA-TA--------------CATATTTTAAATTCAA---TT---AACATCTTAAATTTTAATTATTT-AAA-AA-T-A-TCAACGGATGTTC-TCTTCAAGAAA-TGTTT---C-TGAAATCCAA-AT-AGAA-TTGTAGCCA---CTTTC
gi|19 : tcaTAG----TATGTTTC-T--TTA-TGAACAGC-AAA-AACT-A-GCTC-TTTT--G--TC---TC-CTGAGCG-T-CA--AA--TA-GGAAA--T-A-TTTT-TACAG-AA-G-TGTAATAA
gi|2 : aagaaacatgcttccACTG-TTGGGAAAAGA-AA-GAGACATATATAACATATTTTAAATTCAA---TT---AAAAT-------TTTAATCATTT-AAC-AA-T-A-TCAACGGATGTTC-TCTTCAAGAAA-TGTTT---C-TGAAGTCCAA-AT-CTTA-TTGTAATCAAGGTTTTCT--TTGCG-T-AG-AAAGCACC-A--TCCA---G--A---------------ATTCC--C-AG--------TTC-------AGC--AT---AA--A-ACTTCTTTAAT--TTAAA--TGTAGAACAC---AT---------TGA------T--CTCCTAT---AAAGTA-A--TTT-CTCC-A-TTTCC-T---C-AATAAAGATC--T---A---GT--TTTTT------TCTTTACTCTAAATAGT-CTCCAA-AT--A--GCATTGTAGCCACTTC-CACA---ACTTTTT-GTTTGT-TT-CTAC-TA-TC-TT--T---AGAATTGA-CA-AATG-C-AGCGAT------ATC-CTTGTCGTTTCATGAGCCA-TATTTC-GTAAA----TACATGTA-CTG-TTT--CA-AGACGAC-A-TATTGT-TGT-AGTGGAA--CTCTCTAGTGT--T-GCTAACGCTG-GAG-ATAC-CTTCAACG-AAT------CAAATT-AC-AGG-A--A-AT-CAAAACTTG-CG----T-C-A----AA-G--CAT--GCAG-GAAAT-----TA-T-------T-CG-A---AA---GG-GGAAT-AG-T-----C-AAAAA--ACTA-TTC-CC---T--GGGA-A--ATAG----TTTGTTAA-T--TCA-CGAACAGT-GTA-AA-T-A-GCTA-TTTT--A--TC---TC-CTGAACG-T-CA--TA--TA-GGAAA--C-A-TTTT-TACAG-AA-G-TATAATAAatattg
gi|20 : ctAATT-ACCAGG-A--AGAT-CAAA-CTGGGCG----T-C-A----AAAG--CGT--GCGG-GAAA------TA-T-------TACGAA---AC---GG-GGAATAAG-T-----A-AAAAT--ACTA-TTCTCT---T--GGGA-AATATAG----TTCGT
gi|21 : aggctACTG-TTGGGAAAA-A-AA-GAAAGG-AT-T--CATGTTTTAAATTCAA---TT---AACA
gi|3 : ttcaTGGGAAAAGA-AA-GATACA-------CAT-TTTAAAATTCAG---TT---AACAT-------TTTAATTATTTTAAC-A--T-A-TCA-CGGATGTTC-TCTTCAAGAAC-TGCTT---C-CCAAGTC-AA-AC---------TAATTAACGCTTTCC--TTGCG-T-AG-AACGTACCCG--TCCG---G--T---------------TTTCCACC-AG--------TTTTTCA---AGC--AT---AA--A-ACTTTTTCAAT--TTAGACTT--A---CAC---AT---------CGACCGAGAT--CTCCATTG--AAAGTG-A--TTT-CTCTTA-TTTCC-T---CCAGTA-----T--T---ATAGGT--TTTTTCC-TA-TCTTT-CACTAAATAGT-CTCCAA-A---A---------AGCCACTTTACA-A---ACATTTT-GTTTGT-T--CTAA-TA-TC-TT--T---ATA-TCGA-CA-AGCGGC-AACGAT------ATCTCTCGTAG----------------CTC-GTAAACTTCTAT---TA-CTG-TTT---G-AGACGAC-AATATTGT-TGT-AGTGGAA--CTCT-TAGTGT--T-ACTAACGCTG-AAG-ATAC-CTTCA-CC-AAT------CAAATTTAC-AGT-A--A-ATTCAAAACTGG-CGG---T-C-A----AA-GTCCGT--GCGG--AAAT-----TA-T-------T-CG-AT--AC----G-GGAAT-AG-T-----C-AAAAA--ACTA-TT--TC---C--GGGG-A--ATAGT---TTTGTTTA-TTCTCA-CGAACAGT-GTA-AA-TAA-GCTA-TTTT--A--TC---TC-CTGAACG-TCCA--TA--TACGGAAA--A-A-TTTT-TACAG-AA-G-TATAA
gi|4 : cggTG-TTGGGAAAA---AA-GA-AGA-AT-A--C-TATTTTAAATTCAG---CTTAAAACAT-------TTTA-TTATTT-AAC-AA-CCA-TCAACGGATGATC-TCTTCAAGAAACTGTTT---C-TGAAGTCCAA-AT-C-------TAAT-AACGCTTTCC--TTTCG-T-AGAAAAGTACC-G--TTCG---GTTT---------------TTTCC--C-AG--------TTC-------AGCATAT---AA--A-ACTTCTTCAAT--TTAGA-------AACAC---ATCGAC-----CGA------T--CTCCATTGA-AAAGTA-AATTTC-CTCT-A--TTCC-T---CAAATA-----T--TATAA---GT--TTTTTC--CA---TTTCCACTAAATAGTCCTCCAA-A---A---------AGCCACTTT-TACA---ACATTTTGGTTTGT-TT-CTAC-TA--------A---ATACTCGA-C--AGCA-C-AGCGAT------ATC-C---------------------TCTC-GTAAA----TAC------C-G-TTT--CG-AGAC-AC-ATTAGTGT-TGT-AGTGGAA--CTCTCTAGTGT--T-ACTAACGCTG-AAG-ATAC-CTTCAACC-AAT------CAAATT-AC-AGGAA--A-AT-CAAAACTGG-CGC---T-CAA----AA-G--AGT--GCGG-GAAAT-----TATT-------T-CG-A---AC---GGTGGAAT-AG-T-----C-AAAAA--ACTA-TTC-TC---C--GGGGCA--ATAG----TTTGTTTA-T--TCACCGAACTGT-GT--AA-T-A-GCTATTTTT--A--TCT--TC-TTGAACGCT-CACCTA--TA-GGAAA--C-A-TTTTGTACAG-AAGG-TATAATAata
gi|5 : catctTTT-AAC-AAGT-AATCAACTGATGTCCCTCTTCAAAGAA-TGTTT---CATGGAGTCCGA-TC-TT-T-TTGTA-TCAAGGTTTTCA--TTGCG-T-AG-AAAGCACC-A--TCC----G--T---------------TTTCC--CAAG--------TCC-------AGC--AT---AA--A-AA--CTTTAAT--T---A--T--AGAAC------T---------CGA------T--CCCCGTA---AAAGTA-AT-TTT-CTCC-A-TGTCT-T---C--ATA--------T---A---GT--TTCTTCA-TA-TCTTTACATGAAGT--C-CTCCAATA---AT-ACATTATAG-CACTTT-CACA--------CT-AGTTGT-TT-CTAC-TA-TC-TT--T---AGAATCGA-CA-GCTG-C-A-CAAT------ATC-CCCGTCG--TAATGA-CC--CATCTC-GTAAA----TAC---T--T-GTTTT--CGAAGACGAC---TACTA--TGT-AGTG------------------T-GCT-ACGCTG-AAG-ATAC-CATC-ACC--AT------CAAATT-AC-AGG-A--A-AT-CAAACGTGG-CG----C----------------------G-GAGAT-----TA-T-------T-TG-A---ACAAAAA-GAAAT-AG-TTTCCCC-AAAAAACACTA-TTC-GC---T---GGA-A--ATAA----TTTGTTTA----TCA-CGAACTGT-TAA-AA-T-A-GCTA--ATT--A--TC---TC-TTGAACG-T-CA--TA--TA-GGAAAACC-A--TTT-TA-AG-AA-ATTATAA
gi|6 : at--TTGCG-T-AG-AAAATATG-G--TCCGATTG--T---------------TTTCC--C-AGTTCATGGTTTCTCAGTTGAGC--AT---AA--A-CCTTCTTTA----TTA----T--AGAAAAC---AT---------CGA------TTGCTC--------AAATATC--TTT-GTCC-A-TTTTT-TTTTC-AATA-----T------A---AT--TTCACCA-TA-TCTTTTCACTAAGTAGT-TTCAGA-A---A--ACGTTATAGCCATTTT-TACA---ACATTTC-GTTT-T-TT-CTAC-TA-TC-TT--T---AGAGTCGA-CA-AGCG-C-AGCGAT------ATT-TTCGTCATTTAACGA-CTCGTATCTC-ATATA----TAG---T----G-TTC--TG-ACACGAC-A-TATTGT-TGT-AGTGGAA--CTGCC-AGTGT--T-GCTGATGCTG-AAG-ATAC-CTTCAACC-AAT------CAAATT-AC-TGG-A--A-AT-CAAATCTAA-CG----T-C-A----AA-T--CGT--GAGG-GAAAT-----TA-T-------T-CT-A---AC---GG-GGAAT-AG-T-----C-AAACA--TATAGTTT-ACTAAC--GGGG-A--ATAG----Ta
gi|6 : tctgattgtaaA-T--TCA-CGAACAGT--TAGAA-T-A-CCTC-TTTT--A--TC---TA-CTGTACG-G-CA--TA--Tcaaacatataatttacacatctgagaaatatatttttttttaattcacgaacagttagaatacctcttttatctactgtacggcatat
gi|7 : tctgattgtaattgcgtagaaaatatggtccgattgttttcccagttcatggtttctcagttgagcataaaccttctttattatagaaaacatcgattgctcaaatatctttgtccatttttttttcaatataatttcaccatatcttttcactaagtagtttcagaaaacgttatagccatttttacaacatttcgttttttctactatctttagagtcgacaagcgcagcgatattttcgtcatttaacgactcgtatctcatatatagtgttctgacacgacatattgttgtagtggaactgccagtgttgctgatgctgaagataccttcaaccaatcaaattactggaaatcaaatctaacgtcaaatcgtgagggaaattattctaacggggaatagtcaaacatatagtttactaacggggaatagtcaaacatataatttacacatctgagaaatatatttttttttaA-AT-CT-AATTTTAATCAAGGATATAT--TTGCG-T-AG-AAAATACG-G--CCCG---A--T---------------CTTCC--C-AG--------TTC-------AGC--AT---AA--A-ACTTGTTTAAT--T------T--GGAACAA---AT---------CGA------T--CTCCCTTC--AAAGTT-A--TTT-TTCC-A-TTACA-T---T-AATA--------T---A---GT--TTCTCCA-TA-T-TTTTCACTAAGTAGT-TACCAA-AT--A--TCATTATAGTCATTTT-CACA---ACTTCTT-GTTT-T-TT-CTGC-TA-TC-TT--T---AGAGTTGA-GA-AGCG-A-AGCGAT------ATC-T---TCGTTTAATGA-CTAGTATCTC-AT-------TA---------------------ACGAT-A-TATTGT-TGT-AGTGGAA--CTTCCCAGTAT--T-CCTAAAGCTG-AAA-ATAA-CTTCAGCC-AAT------CAAATT-AT-AAG-G--A-AT-CAAAATTGG-TG----T-C-G----AA-G--CGG--GCGG-AAAATTACAGTA-T-------T-CG-A---AC---CA-GGAAT-AG-T-----C-AAAAC--ACTA-TTT-TC---T--AGTA-T--ATAA----TTTGTTTA-T--TCA-CCAACAG--GAA-AA-A-ACGC-A--TTT--A--TT---TC-CTGAATG-T-CA--TA--TA-AGAAA--C-A-ATTT-TATAG-AA-G-TGTAATAA
gi|8 : c-A-TTGCAATCGAGGCTATCT--TTGCG-T-AG-AAAATACG-G--TCTG---A--TATTCCCAGTTCAGGGTTTCT--C-AG--------TTC-------AGC--AT---AA--A-ACGTCTTTA----TTA----T--AGAAAAC---AT---------CGA------T--TTCCCTT---CAAATT-A--TTT-GTCC-A-ATTCC-T---C-AATA-----T--G---A-------TCTCTCAATA-TCTTTTCACTATGCAGT-TTCCAA-AGAAA--ACATTATAGCCATTTT-CACA---AC-TTTT-GGTTGT-TT-TAAC-TA-TC-TT--C---AGAGTTAG-GA-AACA-C-AGCGAT------AGC-TTCATCATTTAATGA-CTCTTATCTT-ATAAA----CAC---T----G-TTT--TA-AGACGAC-A-TATTGT-TGT-AGTGGAA--CTGCC-AGTGT--T-GCTGATGCTG-AAG-ATAC-CTTCAACC-AAT------CAAATT-AG-TAG-A--A-AT-CAAAACCCA-TC----T-C-A----AA-G--CGT--GTGG-GGGTT-----TA-T-------T-CG-A---AC---GG-GGAAT-AC-T-----C-AAAAA----TA-TTA-TC---T--GAGA-A--ATAGGTTTTTTTTTTA-T--CCA-CGAACAGT--TAGAA-T-A-CCTC-TTTT--A--TC---TA-TTGTACG-T-CA--TA--Ta
gi|9 : gCTG-TTGGGGGAAAA-AA--AGATA-------CATATTATAAATTCAG---TT---AACAT-------TTTAATTATTT-AAC-AA-T-A-TCAACGGATGTTC-TCTTCAAGAAC-TGTTT---C-TGAAGTCCAA-AT-C-------TAATTAACGCTTTCC--TTGCG-T-AG-AAAGTACC-G--TCCG---G--T---------------TTTCC--C-AT--------TTC-------AGC--AT---AA--A-ACTTCTTCAAT--TTAAA--T--AGAA-GC-------------------------------------------A--TTT-CTCT-A-CTTCC-T---C-AATA-----TTAT---A---GT--TTTTCCA-TA-TCTTTCCACTAAATAGT-CTCCAA-A---A---------AGCCACTTT-TACA---ACATTTT-GTTTGT-TT-CTAC-TA-TC-TTTAT---ATAGTCGA-CA-AGCG-C-AGCAAT------ATC-CTC-TCG--TAA-----------CTC-GTAAA----TA----TACC-G-TTT--CG-AGACTAC-A-TATTGT-TGT-AGTGGAA--CTCTCTAGTGT--T-ACTAACGCTG-AGG-ATAC-CTTCAACC-AAT------CAAATT-AC-AG
Alignments
lowQualScore : 5555555555555 1111111 333333333 222222222222222 11111111 1111111 3333333333333333333333333333 111111 222 1 22222222222222 3333333333333 111111 555555555555555555555 22222222 111111 1111 11111 111
lowQualScore : 5 777 8 4 3333333333333 777 777 6666666 8 4 4 4 4 4 0 55 777 4 4 555555555 1 1 44 3 3 3 3 44 555 44 000000000000000 55 3 33333333 9999999 55 666 55 3 1 55 5555555555555555555555555555 444444 55 3 555 9999 3 3 3 3 666 0 11111111111111 3 55 0 3 7 3 9999999999999 3 555 3 3 3 3 3 3 3 555 666 3 3 3 3 111111 4 000000000000000000000 3 99999999 3 55555 3 6 6 3 44 3 44 3 3 3 3 2 111111 2 2 2 33 2 2 5 4444 2 5 6666 2 66 33 2 77777 2 9999999 5 2 777 5555 2 2 2 77777 2 33 0 33 2 11111 2 66 8888 3 88 3 2 99999 3 3 3 6 44 44 111 3 3 6 44 44 3 55 4 4 4 4 4 4 0
lowQualScore : . ... . . ............. ... ... ....... . . . . . . . .. ... . . ......... . . .. . . . . .. ... .. ............... .. . ........ ....... .. ... .. . . .. ............................ ...... .. . ... .... . . . . ... . .............. . .. . . . . ............. . ... . . . . . . . ... ... . . . . ...... . ..................... . ........ . ..... . . . . .. . .. . . . . . ...... . . . .. . . . .... . . .... . .. .. . ..... . ....... . . ... .... . . . ..... . .. . .. . ..... . .. .... . .. . . ..... . . . . .. .. ... . . . .. .. . .. . . . . . . .
lowQualScore : 0 888 9 4 0000000000000 888 888 2222222 9 4 4 4 4 4 8 44 888 4 0 111111111 2 4 66 3 3 3 3 66 888 66 888888888888888 00 6 22222222 5555555 00 444 00 6 3 00 7777777777777777777777777777 111111 00 5 999 9999 6 6 6 6 444 9 22222222222222 6 00 2 6 3 3 0000000000000 3 888 6 3 3 3 3 3 3 888 999 3 3 3 3 555555 0 444444444444444444444 6 99999999 3 00000 3 7 7 3 66 7 66 3 1 1 1 9 111111 7 7 9 99 9 9 7 6666 9 7 1111 9 88 99 9 11111 9 3333333 7 9 999 1111 9 9 9 11111 9 99 1 44 9 66666 9 88 9999 1 55 1 8 99999 1 1 1 2 22 22 555 1 1 2 22 22 6 00 0 0 0 0 0 0 4
consensus : NNACTG-TTGGGAAAA---GA-AA-GA-ACA---------CATATTTTAAATTCAG---TT---AACAT-------TTTAATTATTT-AAC-AA-T-A-TCAACGGATGTTC-TCTTCAAGAAN-TGTTT---C-TGAAGTCCAA-AT-CT-A-TTGTAATCAAGGCTTTCC--TTGCG-T-AG-AAAGTACC-G--TCCG---G--T---------------TTTCC--C-AG--------TTC-------AGC--AT---AA--A-ACTTCTTCAAT--TTAGA--T--AGAACAC---AT---------CGA------T--CTCCNTT---AAAGTA-A--TTT-CTCC-A-TTTCC-T---C-AATA-----TT---A---G-T--TTCTCCATA-TCTTTCCACTAAGTAGT-CTCCAA-A---A--GCATTGTAGCCACTTT-CACA---ACATTTT-GTTTGT-TT-CTAC-TA-TC-TTT---AGA--GTCGA-CA-AGCG-C-AGCGAT------ATC-CTCGTCGTT--TAATGA--C-T---ATCTC-GTAAATAC-----TC-G-TTT--CG-AGACGAC-A-TATTGT-TGT-AGTGGAA--CTCTCTAGTGT--T-GCTAACGCTG-AAG-ATAC-CTTCAACC-AAT------CAAATT-AC-AGG-A--A-AT-CAAAACTGG-CG----T-C-A----AA-G--CGT--GCGG-GAAAT-----TA-T-------T-CG-A---AC---GG-GGAAT-AG-T-----C-AAAAA--ACTATT-CT-C---C-GGGA-A--ATAG----TTTGTTTA-T--TCA-CGAACAGT-GTA-AA-T-A-GCTA-TTTT--A--TC---TC-CTGAACG-T-CA--TA--TA-GGAAA--C-A-TTTT-TACAG-AA-G-TATAATAA
Reference ( family-1142 ) : NNACTG-TTGGGAAAA---GA-AA-GA-ACA--T------CATATTTTAAATTCAG---TT---AACAT-------TTTAATTATTT-AAC-AA-T-A-TCAACGGATGTTC-TCTTCAAGAAN-TGTTT---C-TGAAGTCCAA-AT-CT-A-TTGTAATCAAGGCTTTCC--TTGCG-T-AG-AAAGTACC-G--TCCG---G--T---------------TTTCC--C-AG--------TTC-------AGC--AT---AA--A-ACTTCTTCAAT--TTAGA--T--AGAACAC---AT---------CGA------T--CTCCNTT---AAAGTA-A--TTT-CTCC-A-TTTCC-T---C-AATA-----TT---A---G-T--TTTTCCATA-TCTTTCCACTAAGTAGT-CTCCAA-A---A--GCATTGTAGCCACTTT-CACA---ACATTTT-GTTTGT-TT-CTAC-TA-TC-TTT---AGA--GTCGA-CA-AGCG-C-AGCGAT------ATC-CTCGTCGTT--TAATGA--C-T---ATCTC-GTAAATAC-----TC-G-TTT--CG-AGACGAC-A-TATTGT-TGT-AGTGGAA--CTCTCTAGTGT--T-GCTAACGCTG-AAG-ATAC-CTTCAACC-AAT------CAAATT-AC-AGG-A--A-AT-CAAAACTGG-CG----T-C-A----AA-G--CGT--GCGG-GAAAT-----TA-T-------T-CG-A---AC---GG-GGAAT-AG-T-----C-AAAAA--ACTATT-CT-C---C-GGGA-A--ATAG----TTTGTTTA-T--TCA-CGAACAGT-GTA-AA-T-A-GCTA-TTTT--A--TC---TC-CTGAACG-T-CA--TA--TA-GGAAA--C-A-TTTT-TACAG-AA-G-TATAATAA
gi|1 : CTGCTTGTGAAAA---GA-AAAGATACAGAT------CA-GTTTTAAATTCAGGTTTT---AGAAT-------TTTAAATATTT-AAC-AA-T-A-TCACCGGATGTT--TCTTCA-GAAC-TGTTTTCTC-TGAAGTCAGAGATGCT-A-AT-TACTGGGGGCTTTTCCTTTGCG-TGAG-GAA-TACC-GCGTCAG---G--T---------------TTTCT--C-AG--------TTC-------AGC--ATTGGAT--ATACTTCTTCAGTGTTCAGA-------AACAC---ATGATATCGACCGAA-----T--CTCCGTTG--AAAGTA-A--TTTTCTCT-AGTTTCCGT---C-A-TA-----TT---A---G-T--TTT-CCATAATCTTTCCA-----------------A---A--GCA---------CTTT-TACACAAACATTTT-GTTTGTGTTACTAC-TAGTC-TTTTATAG---GTCGAGCACAGCG-CGAGCGATGAATATATC-CTAGCC--------TGC--CGT---AACTCCGTAAATAC-----CCCG-TTTTGCG-AGACGACCA-TATTGTCTGTCAGTGGAAGACTCTCTAGTGTAATAGCTAACGCTGGAAGTATAC-CTTCAACC-AATA-----CAAAGT-AA-AGG-A--A-AT-CAAAACTGG-CG----TGC-A----AA-G--CGT--GCGG-GAAAT-----TA-G-------TGCG-A---AC---GG-GGAAT-AG-T-----C-AAAAA--AATATT-CT-C---C-GGG--A--ATAG----TTTG-TTA-TTGTCA-CGAACTGT-GTA-AA-T-A-GCTA-TTTTTAA--TCCTTTCTCTGAACG-T-CA--TA--TT-GGAAA--C-A-TTTT-TACAGAAA-G-T-TAATAA
gi|10 : CTG-TTGGAAAAG---GATAA-GA-TC----------CATATTTTTAAATCAG---TT---AACAT-------TTTAATTATTTGAACAAA-A-A-TC-ACGGATGTTC-TCTTCAAG-AC-TGTTT---C-TGAAGTCCAA-AT-C-------TAATTAACGCTTT-C--TTACGTT-AG-AAAGTCCC-G--TCCG---G--T---------------TTT-C--C-AG--------TTC-------AGC--AT---AA--A-A-TTCTTCAAT--TTA-------CGAACACTCGAC---------CGA------T--CTCCATTTGGAAAGTA-A--TTT-CTCT-A-TT--C-T---CAAATA-----TT---A---G-TAGTTATCCATA-TC-TTCCACTAAATAGTCCTTCAA-A---A---------AGCCACTTT-TACA---ACATTTT-CTTTGT-TT-CTACGTA-TCTTTT---AG---------CG-AGCG-A-AGCGAa
gi|11 : tcatCCAA-AT--A--GAATTGTAGCCACTTT-CCTA---ACTTTTT-GTTTGT-TT-CTAC-TA-TC-TTT---AGA--ATCGA-CA-AACG-C-AGCGAT------ATC-CTCGTCGTT--TAAT------------CTC-GTAAATGC-----T--G-TTT--CG-AGACGTC-A-TGTTGTACAT-AGTGGAA--CTCTCTAGTGT--T-GCTAACGCTG-AAT-ATATACTTCAACT-ATT------CAAATT-AC-AGG-A--A-AT-C-AAACTGG-CG----T-C-A----AA-G--CGT--GCGG-GAAAT-----TA-T-------T-CG-A---AC---GG-GGAAT-AG-T-----A-AAAAA--ACTATT-CT-C---T-GGGA-A--ATAgact
gi|12 : TTTC-GTAAATAC-----C------T--CG-AGACGAC-A-T-TTGT-TGT-AGTGGGA--ACCTCTAGTGT--T-ACTAACGATG-AAG-ATAC-CTTCAACC-AAT-------AAATT-AC-AGG----A-AT-C-AAACTGG-CGT---T-C-ATCTGAA-GC-CAT--GCAG-GAAAT-----TA-T-------T-CG-----AC------GGAAT-AGAT-----CAAAAAA--ACTATT-CT-----C-GGGG-A--ATAG----TTTGTTTATT--TCA-CGAAT-GTAGTA-AA-T---GCTATTTTT--A--TC---TC-CTGAACG-T-CA--TATTTT-GGAAA--C-ATTTTT-TACAG-AA-G-TATAATAt
gi|13 : c-----TT-G-TTT--TC-AGACGAC-A-TATAAT-TGC-AGTGGAA--CTCCCCAGTGT--T-GCTAAAGCTG-AAA-ATAA-CTTCAACC-AAT------CAAATT-AC-AGG-A--A-AT-CAAAACTGG-TG----T-C-A----AA-A--CGT--GCAG-GGAAT-----TA-T-------T-CG-A---AC---GG-GGAA--AG-T-----C--AAAA--ATTATA-TT-C---T-AGGA-A--ATAG----TTTGTTTA-T--TCA-CAAAGAGTAATA-AT-T-A-GCTC-TATT--A--TC---TC-CTGAACG-T-CA--TA--TA-GGAAA--CTT-TTTT-TACAG-AA-G-TGTAATAA
gi|14 : aAACGCT--AAG-ATAC-CTTCAACCCAACTGGTTGCAAAGT-AC-AGG-ACAG-AT-CACAACTGGGCAGAATT-CGA----AA-G--CATTGGCGGAGGAAT-----GA-CGCGACCCT-CG-AGGGAC---GG-AGAAT-AG-T-----C-ATAAA--ACTATTTCT-C---TTGGGA-A--ATAG----TTTGTTTA-T--TCA-CGAA-AGT-G-A-AA-A-A-GCTA-TTTT--ACTTCT--TC-CTGAACG-TCCA--TA--TA-GAAAA--
gi|15 : tattgaccggtcagagattttctcatactg--TTGCG-T-AG-ATAATACG-G--TCCG---A--T---------------TTTCC--A-AG--------TTC-------AGA--AT---ACTTG-TCTTCTTTAAT--CTAGA--------ACAC---AT---------CGA------T--CTCCTTTT--AAAGTA-A--TCT-CTTA-A-TTTCC-T---C-AATA-----T----A---G-T--CTCTCCATA-TCTTTTCACTAAGTGGT-TTCCAA-A---AAAGCATTGTAGCCCTTTT-CACA---ACATTTT-GTTTAT-TT-CTAC-TA-TC-TTC---AGA--GTTGA-TA-AGCG-C-
gi|16 : CAACC-AAT------CAAGTT-AC-AGG-A--A-AT-CAAAACTAG-CG----T-C-A----AA-G--AGT--GCGG-GAAAT-----TA-T-------T-CG-A---AA---GG-GGAAT-AG-T-----A-AAAAA--A------------------A-AT-ATAG----TTTGTTTA-T--TCA-CGAACTGT-GTA-AA-T-A-GCTA-TTTT--A--TC---TC-CTGAACG-T-CA--TA--TA-GGAAA--C-A-TTTT-TACAG-A-----ATAATA
gi|17 : ACTG-TTGGGAAAA---GA-AA-GA--TA---------CATATCTTAAATTCAA---TG---AACAT-------TCAAATTGTTT-AAC-AC-T-A-TCAACGGATGTTC-TCC------GT-TGTTT---C-TGAAGTTCAA-CTATT-A-TTGTAATCAAGATTTTCC--TTGCG-T-AG-AAAGCACC-G--TCCG---G--T---------------TT
gi|18 : tcaACTG-TTGGAAAAA---GA-TA----------------CATATTTTAAATTCAA---TT---AACATCTTAAATTTTAATTATTT-AAA-AA-T-A-TCAACGGATGTTC-TCTTCAAGAAA-TGTTT---C-TGAAATCCAA-AT-AGAA-TTGTAGCCA---CTTTC
gi|19 : tcaTAG----TATGTTTC-T--TTA-TGAACAGC-AAA-AACT-A-GCTC-TTTT--G--TC---TC-CTGAGCG-T-CA--AA--TA-GGAAA--T-A-TTTT-TACAG-AA-G-TGTAATAA
gi|2 : aagaaacatgcttccACTG-TTGGGAAAA---GA-AA-GAGACA--TATATAACATATTTTAAATTCAA---TT---AAAAT-------TTTAATCATTT-AAC-AA-T-A-TCAACGGATGTTC-TCTTCAAGAAA-TGTTT---C-TGAAGTCCAA-AT-CTTA-TTGTAATCAAGGTTTTCT--TTGCG-T-AG-AAAGCACC-A--TCCA---G--A---------------ATTCC--C-AG--------TTC-------AGC--AT---AA--A-ACTTCTTTAAT--TTAAA--TGTAGAACAC---AT---------TGA------T--CTCCTAT---AAAGTA-A--TTT-CTCC-A-TTTCC-T---C-AATAAAGATCT---A---G-T--TTTTT-----TCTTTACTCTAAATAGT-CTCCAA-AT--A--GCATTGTAGCCACTTC-CACA---ACTTTTT-GTTTGT-TT-CTAC-TA-TC-TTT---AGA--ATTGA-CA-AATG-C-AGCGAT------ATC-CTTGTCGTT--TCATGAGCCAT---ATTTC-GTAAATACATGTACT-G-TTT--CA-AGACGAC-A-TATTGT-TGT-AGTGGAA--CTCTCTAGTGT--T-GCTAACGCTG-GAG-ATAC-CTTCAACG-AAT------CAAATT-AC-AGG-A--A-AT-CAAAACTTG-CG----T-C-A----AA-G--CAT--GCAG-GAAAT-----TA-T-------T-CG-A---AA---GG-GGAAT-AG-T-----C-AAAAA--ACTATT-CC-C---T-GGGA-A--ATAG----TTTGTTAA-T--TCA-CGAACAGT-GTA-AA-T-A-GCTA-TTTT--A--TC---TC-CTGAACG-T-CA--TA--TA-GGAAA--C-A-TTTT-TACAG-AA-G-TATAATAAatattg
gi|20 : ctAATT-ACCAGG-A--AGAT-CAAA-CTGGGCG----T-C-A----AAAG--CGT--GCGG-GAAA------TA-T-------TACGAA---AC---GG-GGAATAAG-T-----A-AAAAT--ACTATT-CT-CT--T-GGGA-AATATAG----TTCGT
gi|21 : aggctACTG-TTGGGAAAAAAAGA-AA-GG-AT---T------CATGTTTTAAATTCAA---TT---AACA
gi|3 : ttcaTGGGAAAA---GA-AA-GATACA---------CAT-TTTAAAATTCAG---TT---AACAT-------TTTAATTATTTTAAC-A--T-A-TCA-CGGATGTTC-TCTTCAAGAAC-TGCTT---C-CCAAGTC-AA-AC---------TAATTAACGCTTTCC--TTGCG-T-AG-AACGTACCCG--TCCG---G--T---------------TTTCCACC-AG--------TTTTTCA---AGC--AT---AA--A-ACTTTTTCAAT--TTAGACTT--A---CAC---AT---------CGACCGAGAT--CTCCATTG--AAAGTG-A--TTT-CTCTTA-TTTCC-T---CCAGTA-----TT---ATAGG-T--TTTTTCCTA-TCTTTC-ACTAAATAGT-CTCCAA-A---A---------AGCCACTTTACA-A---ACATTTT-GTTTGT-T--CTAA-TA-TC-TTT---ATA---TCGA-CA-AGCGGC-AACGAT------ATCTCTCGTAGCTCGTAA--A--C-T----TCT-----ATTAC-----T--G-TTT---G-AGACGAC-AATATTGT-TGT-AGTGGAA--CTCT-TAGTGT--T-ACTAACGCTG-AAG-ATAC-CTTCA-CC-AAT------CAAATTTAC-AGT-A--A-ATTCAAAACTGG-CGG---T-C-A----AA-GTCCGT--GCGG--AAAT-----TA-T-------T-CG-AT--AC----G-GGAAT-AG-T-----C-AAAAA--ACTATT--T-C---C-GGGG-A--ATAGT---TTTGTTTA-TTCTCA-CGAACAGT-GTA-AA-TAA-GCTA-TTTT--A--TC---TC-CTGAACG-TCCA--TA--TACGGAAA--A-A-TTTT-TACAG-AA-G-TATAA
gi|4 : cggTG-TTGGGAAAA---AAGAA-GA-ATA--C--------TATTTTAAATTCAG---CTTAAAACAT-------TTTA-TTATTT-AAC-AA-CCA-TCAACGGATGATC-TCTTCAAGAAACTGTTT---C-TGAAGTCCAA-AT-C-------TAAT-AACGCTTTCC--TTTCG-T-AGAAAAGTACC-G--TTCG---GTTT---------------TTTCC--C-AG--------TTC-------AGCATAT---AA--A-ACTTCTTCAAT--TTAGA-------AACAC---ATCGAC-----CGA------T--CTCCATTGA-AAAGTA-AATTTC-CTCT-A--TTCC-T---CAAATA-----TTATAA---GTT--TTTTCCA-----TTTCCACTAAATAGTCCTCCAA-A---A---------AGCCACTTT-TACA---ACATTTTGGTTTGT-TT-CTAC-TA------A---ATA--CTCGA-C--AGCA-C-AGCGAT------ATC-C-------------------------TCTC-GTAAATAC------C-G-TTT--CG-AGAC-AC-ATTAGTGT-TGT-AGTGGAA--CTCTCTAGTGT--T-ACTAACGCTG-AAG-ATAC-CTTCAACC-AAT------CAAATT-AC-AGGAA--A-AT-CAAAACTGG-CGC---T-CAA----AA-G--AGT--GCGG-GAAAT-----TATT-------T-CG-A---AC---GGTGGAAT-AG-T-----C-AAAAA--ACTATT-CT-C---C-GGGGCA--ATAG----TTTGTTTA-T--TCACCGAACTGT-GT--AA-T-A-GCTATTTTT--A--TCT--TC-TTGAACGCT-CACCTA--TA-GGAAA--C-A-TTTTGTACAG-AAGG-TATAATAata
gi|5 : catctTTT-AAC-AAGT-AATCAACTGATGTCCCTCTTCAAAGAA-TGTTT---CATGGAGTCCGA-TC-TT-T-TTGTA-TCAAGGTTTTCA--TTGCG-T-AG-AAAGCACC-A--TCC----G--T---------------TTTCC--CAAG--------TCC-------AGC--AT---AA--A-AA--CTTTAAT--T---A--T--AGAAC------T---------CGA------T--CCCCGTA---AAAGTA-AT-TTT-CTCC-A-TGTCT-T---C--ATA------T---A---G-T--TTCTTCATA-TCTTTACATGAAGT--C-CTCCAATA---AT-ACATTATAG-CACTTT-CACA--------CT-AGTTGT-TT-CTAC-TA-TC-TTT---AGA--ATCGA-CA-GCTG-C-A-CAAT------ATC-CCCGTCG----TAATGAC-C-C---ATCTC-GTAAATAC-----TT-GTTTT--CGAAGACGAC---TACTA--TGT-AGTG------------------T-GCT-ACGCTG-AAG-ATAC-CATC-ACC--AT------CAAATT-AC-AGG-A--A-AT-CAAACGTGG-CG----C----------------------G-GAGAT-----TA-T-------T-TG-A---ACAAAAA-GAAAT-AG-TTTCCCC-AAAAAACACTATT-CG-C---T--GGA-A--ATAA----TTTGTTTA----TCA-CGAACTGT-TAA-AA-T-A-GCTA--ATT--A--TC---TC-TTGAACG-T-CA--TA--TA-GGAAAACC-A--TTT-TA-AG-AA-ATTATAA
gi|6 : at--TTGCG-T-AG-AAAATATG-G--TCCGATTG--T---------------TTTCC--C-AGTTCATGGTTTCTCAGTTGAGC--AT---AA--A-CCTTCTTTA----TTA----T--AGAAAAC---AT---------CGA------TTGCTC--------AAATATC--TTT-GTCC-A-TTTTT-TTTTC-AATA-----T----A---A-T--TTCACCATA-TCTTTTCACTAAGTAGT-TTCAGA-A---A--ACGTTATAGCCATTTT-TACA---ACATTTC-GTTT-T-TT-CTAC-TA-TC-TTT---AGA--GTCGA-CA-AGCG-C-AGCGAT------ATT-TTCGTCATT--TAACGA--C-TCGTATCTC-ATATATAG-----T--G-TTC--TG-ACACGAC-A-TATTGT-TGT-AGTGGAA--CTGCC-AGTGT--T-GCTGATGCTG-AAG-ATAC-CTTCAACC-AAT------CAAATT-AC-TGG-A--A-AT-CAAATCTAA-CG----T-C-A----AA-T--CGT--GAGG-GAAAT-----TA-T-------T-CT-A---AC---GG-GGAAT-AG-T-----C-AAACA--TATAGT-TTACTAAC-GGGG-A--ATAG----Ta
gi|6 : tctgattgtaaA-T--TCA-CGAACAGT--TAGAA-T-A-CCTC-TTTT--A--TC---TA-CTGTACG-G-CA--TA--Tcaaacatataatttacacatctgagaaatatatttttttttaattcacgaacagttagaatacctcttttatctactgtacggcatat
gi|7 : tctgattgtaattgcgtagaaaatatggtccgattgttttcccagttcatggtttctcagttgagcataaaccttctttattatagaaaacatcgattgctcaaatatctttgtccatttttttttcaatataatttcaccatatcttttcactaagtagtttcagaaaacgttatagccatttttacaacatttcgttttttctactatctttagagtcgacaagcgcagcgatattttcgtcatttaacgactcgtatctcatatatagtgttctgacacgacatattgttgtagtggaactgccagtgttgctgatgctgaagataccttcaaccaatcaaattactggaaatcaaatctaacgtcaaatcgtgagggaaattattctaacggggaatagtcaaacatatagtttactaacggggaatagtcaaacatataatttacacatctgagaaatatatttttttttaA-AT-CT-AATTTTAATCAAGGATATAT--TTGCG-T-AG-AAAATACG-G--CCCG---A--T---------------CTTCC--C-AG--------TTC-------AGC--AT---AA--A-ACTTGTTTAAT--TTGGA--------ACAA---AT---------CGA------T--CTCCCTTC--AAAGTT-A--TTT-TTCC-A-TTACA-T---T-AATA-----T----A---G-T--TTCTCCATA-TTTTTC-ACTAAGTAGT-TACCAA-AT--A--TCATTATAGTCATTTT-CACA---ACTTCTT-GTTT-T-TT-CTGC-TA-TC-TTT---AGA--GTTGA-GA-AGCG-A-AGCGAT------ATC-TTCGT---T--TAATGA--C-T---A-----GTA--T-C-----TC-A-TT-------AACGAT-A-TATTGT-TGT-AGTGGAA--CTTCCCAGTAT--T-CCTAAAGCTG-AAA-ATAA-CTTCAGCC-AAT------CAAATT-AT-AAG-G--A-AT-CAAAATTGG-TG----T-C-G----AA-G--CGG--GCGG-AAAATTACAGTA-T-------T-CG-A---AC---CA-GGAAT-AG-T-----C-AAAAC--ACTATT-TT-C---T-AGTA-T--ATAA----TTTGTTTA-T--TCA-CCAACAG--GAA-AA-A-ACGC-A--TTT--A--TT---TC-CTGAATG-T-CA--TA--TA-AGAAA--C-A-ATTT-TATAG-AA-G-TGTAATAA
gi|8 : c-A-TTGCAATCGAGGCTATCT--TTGCG-T-AG-AAAATACG-G--TCTG---A--TATTCCCAGTTCAGGGTTTCT--C-AG--------TTC-------AGC--AT---AA--A-ACGTCTTTA----TTA----T--AGAAAAC---AT---------CGA------T--TTCCCTT---CAAATT-A--TTT-GTCC-A-ATTCC-T---C-AATA-----TG---A-----T--CTCTCAATA-TCTTTTCACTATGCAGT-TTCCAA-AGAAA--ACATTATAGCCATTTT-CACA---AC-TTTT-GGTTGT-TT-TAAC-TA-TC-TTC---AGA--GTTAG-GA-AACA-C-AGCGAT------AGC-TTCATCATT--TAATGA--C-TCTTATCTT-ATAAACAC-----T--G-TTT--TA-AGACGAC-A-TATTGT-TGT-AGTGGAA--CTGCC-AGTGT--T-GCTGATGCTG-AAG-ATAC-CTTCAACC-AAT------CAAATT-AG-TAG-A--A-AT-CAAAACCCA-TC----T-C-A----AA-G--CGT--GTGG-GGGTT-----TA-T-------T-CG-A---AC---GG-GGAAT-AC-T-----C-AAAAA----TATT-AT-C---T-GAGA-A--ATAGGTTTTTTTTTTA-T--CCA-CGAACAGT--TAGAA-T-A-CCTC-TTTT--A--TC---TA-TTGTACG-T-CA--TA--Ta
gi|9 : gCTG-TTGGGGGAA---AA-AA-AG-ATA---------CATATTATAAATTCAG---TT---AACAT-------TTTAATTATTT-AAC-AA-T-A-TCAACGGATGTTC-TCTTCAAGAAC-TGTTT---C-TGAAGTCCAA-AT-CT-A------ATTAACGCTTTCC--TTGCG-T-AG-AAAGTACC-G--TCCG---G--T---------------TTTCC--C-AT--------TTC-------AGC--AT---AA--A-ACTTCTTCAAT--TTAAA--T--AGAA------------------------------------------GCA----TTT-CTCT-A-CTTCC-T---C-AATA-----TT---ATA-G-T--TTTTCCATA-TCTTTCCACTAAATAGT-CTCCAA-A---A---------AGCCACTTT-TACA---ACATTTT-GTTTGT-TT-CTAC-TA-TC-TTT---ATATAGTCGA-CA-AGCG-C-AGCAAT------ATC-CTC-TCGT----AA-------------CTC-GTAAATATA----CC-G-TTT--CG-AGACTAC-A-TATTGT-TGT-AGTGGAA--CTCTCTAGTGT--T-ACTAACGCTG-AGG-ATAC-CTTCAACC-AAT------CAAATT-AC-AG
Alignments
lowQualScore : 22222222222 1111111 333333333 222222222222222 11111111 1111111 3333333333333333333333333333 111111 222 1 222222222222 3333333333333 111111 555555555555555555555 22222222 111111 1111 11111 111
lowQualScore : 5 777 8 55555555555 9999 777 777 6666666 8 4 4 4 4 4 0 55 777 4 4 999999999 1 1 44 3 3 3 3 44 555 44 000000000000000 55 3 33333333 9999999 55 666 55 3 1 55 4444444444444444444444444444 444444 55 3 555 3 88 3 3 3 3 666 0 333333333333 666 3 55 2 3 7 3 9999999999999 3 555 3 3 3 3 3 3 3 666666 2 3 3 3 3 111111 4 000000000000000000000 3 99999999 3 55555 3 6 6 3 44 3 44 3 3 3 3 2 111111 2 2 2 33 2 2 5 4444 2 5 6666 2 66 33 2 77777 2 9999999 5 2 777 5555 2 2 2 77777 2 33 0 33 2 11111 2 66 8888 3 88 3 2 99999 3 3 3 6 44 44 111 3 3 6 44 44 3 55 4 4 4 4 4 4 0
lowQualScore : . ... . ........... .... ... ... ....... . . . . . . . .. ... . . ......... . . .. . . . . .. ... .. ............... .. . ........ ....... .. ... .. . . .. ............................ ...... .. . ... . .. . . . . ... . ............ ... . .. . . . . ............. . ... . . . . . . . ...... . . . . . ...... . ..................... . ........ . ..... . . . . .. . .. . . . . . ...... . . . .. . . . .... . . .... . .. .. . ..... . ....... . . ... .... . . . ..... . .. . .. . ..... . .. .... . .. . . ..... . . . . .. .. ... . . . .. .. . .. . . . . . . .
lowQualScore : 0 888 9 33333333333 4444 888 888 2222222 9 4 4 4 4 4 8 44 888 4 0 999999999 2 4 66 3 3 3 3 66 888 66 888888888888888 00 6 22222222 5555555 00 444 00 6 3 00 9999999999999999999999999999 111111 00 5 999 6 66 6 6 6 6 444 9 888888888888 444 6 00 6 6 3 3 0000000000000 3 888 6 3 3 3 3 3 3 111111 3 3 3 3 3 555555 0 444444444444444444444 6 99999999 3 00000 3 7 7 3 66 7 66 3 1 1 1 9 111111 7 7 9 99 9 9 7 6666 9 7 1111 9 88 99 9 11111 9 3333333 7 9 999 1111 9 9 9 11111 9 99 1 44 9 66666 9 88 9999 1 55 1 8 99999 1 1 1 2 22 22 555 1 1 2 22 22 6 00 0 0 0 0 0 0 4
consensus : NNACTG-TTGGGAAAA---GA-AAGA-ATA-------CATAT----TTTAAATTCAG---TT---AACAT-------TTTAATTATTT-AAC-AA-T-A-TCAACGGATGTTC-TCTTCAAGAAN-TGTTT---C-TGAAGTCCAA-AT-CT-A-TTGTAATCAAGGCTTTCC--TTGCG-T-AG-AAAGTACC-G--TCCG---G--T---------------TTTCC--C-AG--------TTC-------AGC--AT---AA--A-ACTTCTTCAAT--TTAGA--T--AGAACAC---AT---------CGA------T--CTCCNTT---AAAGTA-A--TTT-CTCC-A-TTTCC-T---C-AATA-----T--T---A---G-T--TTCTCCATA-TCTTTCCACTAAGTAGT-CTCCAA-A---A--GCATTGTAGCCACTTT-CACA---ACATTTT-GTTTGT-TT-CTAC-TA-TC-TT--T---AGAGTCGA-CA-AGCG-C-AGCGAT------ATC-CTCGTCGTT--TAATGA--C-T---ATCTC-GTAAATAC-----TC-G-TTT--CG-AGACGAC-A-TATTGT-TGT-AGTGGAA--CTCTCTAGTGT--T-GCTAACGCTG-AAG-ATAC-CTTCAACC-AAT------CAAATT-AC-AGG-A--A-AT-CAAAACTGG-CG----T-C-A----AA-G--CGT--GCGG-GAAAT-----TA-T-------T-CG-A---AC---GG-GGAAT-AG-T-----C-AAAAA--ACTATT-CT-C---C-GGGA-A--ATAG----TTTGTTTA-T--TCA-CGAACAGT-GTA-AA-T-A-GCTA-TTTT--A--TC---TC-CTGAACG-T-CA--TA--TA-GGAAA--C-A-TTTT-TACAG-AA-G-TATAATAA
Reference ( family-1142 ) : NNACTG-TTGGGAAAA---GA-AAGA-ACA-------CATAT----TTTAAATTCAG---TT---AACAT-------TTTAATTATTT-AAC-AA-T-A-TCAACGGATGTTC-TCTTCAAGAAN-TGTTT---C-TGAAGTCCAA-AT-CT-A-TTGTAATCAAGGCTTTCC--TTGCG-T-AG-AAAGTACC-G--TCCG---G--T---------------TTTCC--C-AG--------TTC-------AGC--AT---AA--A-ACTTCTTCAAT--TTAGA--T--AGAACAC---AT---------CGA------T--CTCCNTT---AAAGTA-A--TTT-CTCC-A-TTTCC-T---C-AATA-----T--T---A---G-T--TTCTCCATA-TCTTTCCACTAAGTAGT-CTCCAA-A---A--GCATTGTAGCCACTTT-CACA---ACATTTT-GTTTGT-TT-CTAC-TA-TC-TT--T---AGAGTCGA-CA-AGCG-C-AGCGAT------ATC-CTCGTCGTT--TAATGA--C-T---ATCTC-GTAAATAC-----TC-G-TTT--CG-AGACGAC-A-TATTGT-TGT-AGTGGAA--CTCTCTAGTGT--T-GCTAACGCTG-AAG-ATAC-CTTCAACC-AAT------CAAATT-AC-AGG-A--A-AT-CAAAACTGG-CG----T-C-A----AA-G--CGT--GCGG-GAAAT-----TA-T-------T-CG-A---AC---GG-GGAAT-AG-T-----C-AAAAA--ACTATT-CT-C---C-GGGA-A--ATAG----TTTGTTTA-T--TCA-CGAACAGT-GTA-AA-T-A-GCTA-TTTT--A--TC---TC-CTGAACG-T-CA--TA--TA-GGAAA--C-A-TTTT-TACAG-AA-G-TATAATAA
gi|1 : CTGCTTGTGAAAA---GA-AAAG-ATA-------CAGATCAGTTTTAAATTCAGGTTTT---AGAAT-------TTTAAATATTT-AAC-AA-T-A-TCACCGGATGTT--TCTTCA-GAAC-TGTTTTCTC-TGAAGTCAGAGATGCT-A-AT-TACTGGGGGCTTTTCCTTTGCG-TGAG-GAA-TACC-GCGTCAG---G--T---------------TTTCT--C-AG--------TTC-------AGC--ATTGGAT--ATACTTCTTCAGTGTTCAGA-------AACAC---ATGATATCGACCGAA-----T--CTCCGTTG--AAAGTA-A--TTTTCTCT-AGTTTCCGT---C-A-TA-----T--T---A---G-T--TT-TCCATAATCTTTCCA-----------------A---A--GCA---------CTTT-TACACAAACATTTT-GTTTGTGTTACTAC-TAGTC-TT--TTATAG-GTCGAGCACAGCG-CGAGCGATGAATATATC-CTAGCC--------TGC--CGT---AACTCCGTAAATAC-----CCCG-TTTTGCG-AGACGACCA-TATTGTCTGTCAGTGGAAGACTCTCTAGTGTAATAGCTAACGCTGGAAGTATAC-CTTCAACC-AATA-----CAAAGT-AA-AGG-A--A-AT-CAAAACTGG-CG----TGC-A----AA-G--CGT--GCGG-GAAAT-----TA-G-------TGCG-A---AC---GG-GGAAT-AG-T-----C-AAAAA--AATATT-CT-C---C-GGG--A--ATAG----TTTG-TTA-TTGTCA-CGAACTGT-GTA-AA-T-A-GCTA-TTTTTAA--TCCTTTCTCTGAACG-T-CA--TA--TT-GGAAA--C-A-TTTT-TACAGAAA-G-T-TAATAA
gi|10 : CTG-TTGGAAAAG---GATAAGA-TC--------CATAT----TTTTAAATCAG---TT---AACAT-------TTTAATTATTTGAACAAA-A-A-TC-ACGGATGTTC-TCTTCAAG-AC-TGTTT---C-TGAAGTCCAA-AT-C-------TAATTAACGCTTT-C--TTACGTT-AG-AAAGTCCC-G--TCCG---G--T---------------TTT-C--C-AG--------TTC-------AGC--AT---AA--A-A-TTCTTCAAT--TTA-------CGAACACTCGAC---------CGA------T--CTCCATTTGGAAAGTA-A--TTT-CTCT-A-TT--C-T---CAAATA-----T--T---A---G-TAGTTATCCATA-TC-TTCCACTAAATAGTCCTTCAA-A---A---------AGCCACTTT-TACA---ACATTTT-CTTTGT-TT-CTACGTA-TCTTT--T---AG-------CG-AGCG-A-AGCGAa
gi|11 : tcatCCAA-AT--A--GAATTGTAGCCACTTT-CCTA---ACTTTTT-GTTTGT-TT-CTAC-TA-TC-TT--T---AGAATCGA-CA-AACG-C-AGCGAT------ATC-CTCGTCGTT--TAAT------------CTC-GTAAATGC-----T--G-TTT--CG-AGACGTC-A-TGTTGTACAT-AGTGGAA--CTCTCTAGTGT--T-GCTAACGCTG-AAT-ATATACTTCAACT-ATT------CAAATT-AC-AGG-A--A-AT-C-AAACTGG-CG----T-C-A----AA-G--CGT--GCGG-GAAAT-----TA-T-------T-CG-A---AC---GG-GGAAT-AG-T-----A-AAAAA--ACTATT-CT-C---T-GGGA-A--ATAgact
gi|12 : TTTC-GTAAATAC-----C------T--CG-AGACGAC-A-T-TTGT-TGT-AGTGGGA--ACCTCTAGTGT--T-ACTAACGATG-AAG-ATAC-CTTCAACC-AAT-------AAATT-AC-AGG----A-AT-C-AAACTGG-CGT---T-C-ATCTGAA-GC-CAT--GCAG-GAAAT-----TA-T-------T-CG-----AC------GGAAT-AGAT-----CAAAAAA--ACTATT-CT-----C-GGGG-A--ATAG----TTTGTTTATT--TCA-CGAAT-GTAGTA-AA-T---GCTATTTTT--A--TC---TC-CTGAACG-T-CA--TATTTT-GGAAA--C-ATTTTT-TACAG-AA-G-TATAATAt
gi|13 : c-----TT-G-TTT--TC-AGACGAC-A-TATAAT-TGC-AGTGGAA--CTCCCCAGTGT--T-GCTAAAGCTG-AAA-ATAA-CTTCAACC-AAT------CAAATT-AC-AGG-A--A-AT-CAAAACTGG-TG----T-C-A----AA-A--CGT--GCAG-GGAAT-----TA-T-------T-CG-A---AC---GG-GGAA--AG-T-----C--AAAA--ATTATA-TT-C---T-AGGA-A--ATAG----TTTGTTTA-T--TCA-CAAAGAGTAATA-AT-T-A-GCTC-TATT--A--TC---TC-CTGAACG-T-CA--TA--TA-GGAAA--CTT-TTTT-TACAG-AA-G-TGTAATAA
gi|14 : aAACGCT--AAG-ATAC-CTTCAACCCAACTGGTTGCAAAGT-AC-AGG-ACAG-AT-CACAACTGGGCAGAATT-CGA----AA-G--CATTGGCGGAGGAAT-----GA-CGCGACCCT-CG-AGGGAC---GG-AGAAT-AG-T-----C-ATAAA--ACTATTTCT-C---TTGGGA-A--ATAG----TTTGTTTA-T--TCA-CGAA-AGT-G-A-AA-A-A-GCTA-TTTT--ACTTCT--TC-CTGAACG-TCCA--TA--TA-GAAAA--
gi|15 : tattgaccggtcagagattttctcatactg--TTGCG-T-AG-ATAATACG-G--TCCG---A--T---------------TTTCC--A-AG--------TTC-------AGA--AT---ACTTG-TCTTCTTTAAT--CTAGA--------ACAC---AT---------CGA------T--CTCCTTTT--AAAGTA-A--TCT-CTTA-A-TTTCC-T---C-AATA-----T------A---G-T--CTCTCCATA-TCTTTTCACTAAGTGGT-TTCCAA-A---AAAGCATTGTAGCCCTTTT-CACA---ACATTTT-GTTTAT-TT-CTAC-TA-TC-TT--C---AGAGTTGA-TA-AGCG-C-
gi|16 : CAACC-AAT------CAAGTT-AC-AGG-A--A-AT-CAAAACTAG-CG----T-C-A----AA-G--AGT--GCGG-GAAAT-----TA-T-------T-CG-A---AA---GG-GGAAT-AG-T-----A-AAAAA--A------------------A-AT-ATAG----TTTGTTTA-T--TCA-CGAACTGT-GTA-AA-T-A-GCTA-TTTT--A--TC---TC-CTGAACG-T-CA--TA--TA-GGAAA--C-A-TTTT-TACAG-A-----ATAATA
gi|17 : ACTG-TTGGGAAAA---GA-AAGA--TA-------CATAT----CTTAAATTCAA---TG---AACAT-------TCAAATTGTTT-AAC-AC-T-A-TCAACGGATGTTC-TCC------GT-TGTTT---C-TGAAGTTCAA-CTATT-A-TTGTAATCAAGATTTTCC--TTGCG-T-AG-AAAGCACC-G--TCCG---G--T---------------TT
gi|18 : tcaACTG-TTGGAAAAA---GA-------TA-------CATAT----TTTAAATTCAA---TT---AACATCTTAAATTTTAATTATTT-AAA-AA-T-A-TCAACGGATGTTC-TCTTCAAGAAA-TGTTT---C-TGAAATCCAA-AT-AGAA-TTGTAGCCA---CTTTC
gi|19 : tcaTAG----TATGTTTC-T--TTA-TGAACAGC-AAA-AACT-A-GCTC-TTTT--G--TC---TC-CTGAGCG-T-CA--AA--TA-GGAAA--T-A-TTTT-TACAG-AA-G-TGTAATAA
gi|2 : aagaaacatgcttccACTG-TTGGGAAAA---GA-AAGAGACATATATAACATAT----TTTAAATTCAA---TT---AAAAT-------TTTAATCATTT-AAC-AA-T-A-TCAACGGATGTTC-TCTTCAAGAAA-TGTTT---C-TGAAGTCCAA-AT-CTTA-TTGTAATCAAGGTTTTCT--TTGCG-T-AG-AAAGCACC-A--TCCA---G--A---------------ATTCC--C-AG--------TTC-------AGC--AT---AA--A-ACTTCTTTAAT--TTAAA--TGTAGAACAC---AT---------TGA------T--CTCCTAT---AAAGTA-A--TTT-CTCC-A-TTTCC-T---C-AATAAAGATC--T---A---G-T--TTTTT-----TCTTTACTCTAAATAGT-CTCCAA-AT--A--GCATTGTAGCCACTTC-CACA---ACTTTTT-GTTTGT-TT-CTAC-TA-TC-TT--T---AGAATTGA-CA-AATG-C-AGCGAT------ATC-CTTGTCGTT--TCATGAGCCAT---ATTTC-GTAAATACATGTACT-G-TTT--CA-AGACGAC-A-TATTGT-TGT-AGTGGAA--CTCTCTAGTGT--T-GCTAACGCTG-GAG-ATAC-CTTCAACG-AAT------CAAATT-AC-AGG-A--A-AT-CAAAACTTG-CG----T-C-A----AA-G--CAT--GCAG-GAAAT-----TA-T-------T-CG-A---AA---GG-GGAAT-AG-T-----C-AAAAA--ACTATT-CC-C---T-GGGA-A--ATAG----TTTGTTAA-T--TCA-CGAACAGT-GTA-AA-T-A-GCTA-TTTT--A--TC---TC-CTGAACG-T-CA--TA--TA-GGAAA--C-A-TTTT-TACAG-AA-G-TATAATAAatattg
gi|20 : ctAATT-ACCAGG-A--AGAT-CAAA-CTGGGCG----T-C-A----AAAG--CGT--GCGG-GAAA------TA-T-------TACGAA---AC---GG-GGAATAAG-T-----A-AAAAT--ACTATT-CT-CT--T-GGGA-AATATAG----TTCGT
gi|21 : aggctACTG-TTGGGAAAAAAAGA-AAGG-ATT-------CATGT----TTTAAATTCAA---TT---AACA
gi|3 : ttcaTGGGAAAA---GA-AAGATACA-------CAT-T----TTAAAATTCAG---TT---AACAT-------TTTAATTATTTTAAC-A--T-A-TCA-CGGATGTTC-TCTTCAAGAAC-TGCTT---C-CCAAGTC-AA-AC---------TAATTAACGCTTTCC--TTGCG-T-AG-AACGTACCCG--TCCG---G--T---------------TTTCCACC-AG--------TTTTTCA---AGC--AT---AA--A-ACTTTTTCAAT--TTAGACTT--A---CAC---AT---------CGACCGAGAT--CTCCATTG--AAAGTG-A--TTT-CTCTTA-TTTCC-T---CCAGTA-----T--T---ATAGG-T--TTTTTCCTA-TCTTTC-ACTAAATAGT-CTCCAA-A---A---------AGCCACTTTACA-A---ACATTTT-GTTTGT-T--CTAA-TA-TC-TT--T---ATA-TCGA-CA-AGCGGC-AACGAT------ATCTCTCGTAGCTCGTAA--A--C-T----TCT-----ATTAC-----T--G-TTT---G-AGACGAC-AATATTGT-TGT-AGTGGAA--CTCT-TAGTGT--T-ACTAACGCTG-AAG-ATAC-CTTCA-CC-AAT------CAAATTTAC-AGT-A--A-ATTCAAAACTGG-CGG---T-C-A----AA-GTCCGT--GCGG--AAAT-----TA-T-------T-CG-AT--AC----G-GGAAT-AG-T-----C-AAAAA--ACTATT--T-C---C-GGGG-A--ATAGT---TTTGTTTA-TTCTCA-CGAACAGT-GTA-AA-TAA-GCTA-TTTT--A--TC---TC-CTGAACG-TCCA--TA--TACGGAAA--A-A-TTTT-TACAG-AA-G-TATAA
gi|4 : cggTG-TTGGGAAAA---AAGAAGA-ATA-------C-TAT----TTTAAATTCAG---CTTAAAACAT-------TTTA-TTATTT-AAC-AA-CCA-TCAACGGATGATC-TCTTCAAGAAACTGTTT---C-TGAAGTCCAA-AT-C-------TAAT-AACGCTTTCC--TTTCG-T-AGAAAAGTACC-G--TTCG---GTTT---------------TTTCC--C-AG--------TTC-------AGCATAT---AA--A-ACTTCTTCAAT--TTAGA-------AACAC---ATCGAC-----CGA------T--CTCCATTGA-AAAGTA-AATTTC-CTCT-A--TTCC-T---CAAATA-----T--TATAA---GTT--TTTTCCA-----TTTCCACTAAATAGTCCTCCAA-A---A---------AGCCACTTT-TACA---ACATTTTGGTTTGT-TT-CTAC-TA--------A---ATACTCGA-C--AGCA-C-AGCGAT------ATC-C-------------------------TCTC-GTAAATAC------C-G-TTT--CG-AGAC-AC-ATTAGTGT-TGT-AGTGGAA--CTCTCTAGTGT--T-ACTAACGCTG-AAG-ATAC-CTTCAACC-AAT------CAAATT-AC-AGGAA--A-AT-CAAAACTGG-CGC---T-CAA----AA-G--AGT--GCGG-GAAAT-----TATT-------T-CG-A---AC---GGTGGAAT-AG-T-----C-AAAAA--ACTATT-CT-C---C-GGGGCA--ATAG----TTTGTTTA-T--TCACCGAACTGT-GT--AA-T-A-GCTATTTTT--A--TCT--TC-TTGAACGCT-CACCTA--TA-GGAAA--C-A-TTTTGTACAG-AAGG-TATAATAata
gi|5 : catctTTT-AAC-AAGT-AATCAACTGATGTCCCTCTTCAAAGAA-TGTTT---CATGGAGTCCGA-TC-TT-T-TTGTA-TCAAGGTTTTCA--TTGCG-T-AG-AAAGCACC-A--TCC----G--T---------------TTTCC--CAAG--------TCC-------AGC--AT---AA--A-AA--CTTTAAT--T---A--T--AGAAC------T---------CGA------T--CCCCGTA---AAAGTA-AT-TTT-CTCC-A-TGTCT-T---C--ATA--------T---A---G-T--TTCTTCATA-TCTTTACATGAAGT--C-CTCCAATA---AT-ACATTATAG-CACTTT-CACA--------CT-AGTTGT-TT-CTAC-TA-TC-TT--T---AGAATCGA-CA-GCTG-C-A-CAAT------ATC-CCCGTCG----TAATGAC-C-C---ATCTC-GTAAATAC-----TT-GTTTT--CGAAGACGAC---TACTA--TGT-AGTG------------------T-GCT-ACGCTG-AAG-ATAC-CATC-ACC--AT------CAAATT-AC-AGG-A--A-AT-CAAACGTGG-CG----C----------------------G-GAGAT-----TA-T-------T-TG-A---ACAAAAA-GAAAT-AG-TTTCCCC-AAAAAACACTATT-CG-C---T--GGA-A--ATAA----TTTGTTTA----TCA-CGAACTGT-TAA-AA-T-A-GCTA--ATT--A--TC---TC-TTGAACG-T-CA--TA--TA-GGAAAACC-A--TTT-TA-AG-AA-ATTATAA
gi|6 : at--TTGCG-T-AG-AAAATATG-G--TCCGATTG--T---------------TTTCC--C-AGTTCATGGTTTCTCAGTTGAGC--AT---AA--A-CCTTCTTTA----TTA----T--AGAAAAC---AT---------CGA------TTGCTC--------AAATATC--TTT-GTCC-A-TTTTT-TTTTC-AATA-----T------A---A-T--TTCACCATA-TCTTTTCACTAAGTAGT-TTCAGA-A---A--ACGTTATAGCCATTTT-TACA---ACATTTC-GTTT-T-TT-CTAC-TA-TC-TT--T---AGAGTCGA-CA-AGCG-C-AGCGAT------ATT-TTCGTCATT--TAACGA--C-TCGTATCTC-ATATATAG-----T--G-TTC--TG-ACACGAC-A-TATTGT-TGT-AGTGGAA--CTGCC-AGTGT--T-GCTGATGCTG-AAG-ATAC-CTTCAACC-AAT------CAAATT-AC-TGG-A--A-AT-CAAATCTAA-CG----T-C-A----AA-T--CGT--GAGG-GAAAT-----TA-T-------T-CT-A---AC---GG-GGAAT-AG-T-----C-AAACA--TATAGT-TTACTAAC-GGGG-A--ATAG----Ta
gi|6 : tctgattgtaaA-T--TCA-CGAACAGT--TAGAA-T-A-CCTC-TTTT--A--TC---TA-CTGTACG-G-CA--TA--Tcaaacatataatttacacatctgagaaatatatttttttttaattcacgaacagttagaatacctcttttatctactgtacggcatat
gi|7 : tctgattgtaattgcgtagaaaatatggtccgattgttttcccagttcatggtttctcagttgagcataaaccttctttattatagaaaacatcgattgctcaaatatctttgtccatttttttttcaatataatttcaccatatcttttcactaagtagtttcagaaaacgttatagccatttttacaacatttcgttttttctactatctttagagtcgacaagcgcagcgatattttcgtcatttaacgactcgtatctcatatatagtgttctgacacgacatattgttgtagtggaactgccagtgttgctgatgctgaagataccttcaaccaatcaaattactggaaatcaaatctaacgtcaaatcgtgagggaaattattctaacggggaatagtcaaacatatagtttactaacggggaatagtcaaacatataatttacacatctgagaaatatatttttttttaA-AT-CT-AATTTTAATCAAGGATATAT--TTGCG-T-AG-AAAATACG-G--CCCG---A--T---------------CTTCC--C-AG--------TTC-------AGC--AT---AA--A-ACTTGTTTAAT--TTGGA--------ACAA---AT---------CGA------T--CTCCCTTC--AAAGTT-A--TTT-TTCC-A-TTACA-T---T-AATA-----T------A---G-T--TTCTCCATA-TTTTTC-ACTAAGTAGT-TACCAA-AT--A--TCATTATAGTCATTTT-CACA---ACTTCTT-GTTT-T-TT-CTGC-TA-TC-TT--T---AGAGTTGA-GA-AGCG-A-AGCGAT------ATC-TTCGT---T--TAATGA--C-T---A-----GTA--T-C-----TC-A-TT-------AACGAT-A-TATTGT-TGT-AGTGGAA--CTTCCCAGTAT--T-CCTAAAGCTG-AAA-ATAA-CTTCAGCC-AAT------CAAATT-AT-AAG-G--A-AT-CAAAATTGG-TG----T-C-G----AA-G--CGG--GCGG-AAAATTACAGTA-T-------T-CG-A---AC---CA-GGAAT-AG-T-----C-AAAAC--ACTATT-TT-C---T-AGTA-T--ATAA----TTTGTTTA-T--TCA-CCAACAG--GAA-AA-A-ACGC-A--TTT--A--TT---TC-CTGAATG-T-CA--TA--TA-AGAAA--C-A-ATTT-TATAG-AA-G-TGTAATAA
gi|8 : c-A-TTGCAATCGAGGCTATCT--TTGCG-T-AG-AAAATACG-G--TCTG---A--TATTCCCAGTTCAGGGTTTCT--C-AG--------TTC-------AGC--AT---AA--A-ACGTCTTTA----TTA----T--AGAAAAC---AT---------CGA------T--TTCCCTT---CAAATT-A--TTT-GTCC-A-ATTCC-T---C-AATA-----T--G---A-----T--CTCTCAATA-TCTTTTCACTATGCAGT-TTCCAA-AGAAA--ACATTATAGCCATTTT-CACA---AC-TTTT-GGTTGT-TT-TAAC-TA-TC-TT--C---AGAGTTAG-GA-AACA-C-AGCGAT------AGC-TTCATCATT--TAATGA--C-TCTTATCTT-ATAAACAC-----T--G-TTT--TA-AGACGAC-A-TATTGT-TGT-AGTGGAA--CTGCC-AGTGT--T-GCTGATGCTG-AAG-ATAC-CTTCAACC-AAT------CAAATT-AG-TAG-A--A-AT-CAAAACCCA-TC----T-C-A----AA-G--CGT--GTGG-GGGTT-----TA-T-------T-CG-A---AC---GG-GGAAT-AC-T-----C-AAAAA----TATT-AT-C---T-GAGA-A--ATAGGTTTTTTTTTTA-T--CCA-CGAACAGT--TAGAA-T-A-CCTC-TTTT--A--TC---TA-TTGTACG-T-CA--TA--Ta
gi|9 : gCTG-TTGGGGGAA---AA-AAAG-ATA-------CATAT----TATAAATTCAG---TT---AACAT-------TTTAATTATTT-AAC-AA-T-A-TCAACGGATGTTC-TCTTCAAGAAC-TGTTT---C-TGAAGTCCAA-AT-C-------TAATTAACGCTTTCC--TTGCG-T-AG-AAAGTACC-G--TCCG---G--T---------------TTTCC--C-AT--------TTC-------AGC--AT---AA--A-ACTTCTTCAAT--TTAAA--T--AGAA-GC-------------------------------------------A--TTT-CTCT-A-CTTCC-T---C-AATA-----TTAT---A---G-T--TTTTCCATA-TCTTTCCACTAAATAGT-CTCCAA-A---A---------AGCCACTTT-TACA---ACATTTT-GTTTGT-TT-CTAC-TA-TC-TTTAT---ATAGTCGA-CA-AGCG-C-AGCAAT------ATC-CTC-TCG----TAA-------------CTC-GTAAATATA----CC-G-TTT--CG-AGACTAC-A-TATTGT-TGT-AGTGGAA--CTCTCTAGTGT--T-ACTAACGCTG-AGG-ATAC-CTTCAACC-AAT------CAAATT-AC-AG
Alignments
lowQualScore : 111111111 1111111 333333333 222222222222222 11111111 1111111 3333333333333333333333333333 111111 222 1 222222222222 3333333333333 111111 555555555555555555555 22222222 111111 1111 11111 111
lowQualScore : 5 777 4 999999999 4 9999 4 777 777 6666666 8 4 4 4 4 4 0 55 777 4 4 999999999 1 1 44 3 3 3 3 44 555 44 000000000000000 55 3 33333333 9999999 55 666 55 3 1 55 4444444444444444444444444444 444444 55 3 555 3 88 3 3 3 3 666 0 333333333333 666 3 55 2 3 7 3 9999999999999 3 555 3 3 3 3 3 3 3 666666 2 3 3 3 3 111111 4 000000000000000000000 3 99999999 3 55555 3 6 6 3 44 3 44 3 3 3 3 2 111111 2 2 2 33 2 2 5 4444 2 5 6666 2 66 33 2 77777 2 9999999 5 2 777 5555 2 2 2 77777 2 33 0 33 2 11111 2 66 8888 3 88 3 2 99999 3 3 3 6 44 44 111 3 3 6 44 44 3 55 4 4 4 4 4 4 0
lowQualScore : . ... . ......... . .... . ... ... ....... . . . . . . . .. ... . . ......... . . .. . . . . .. ... .. ............... .. . ........ ....... .. ... .. . . .. ............................ ...... .. . ... . .. . . . . ... . ............ ... . .. . . . . ............. . ... . . . . . . . ...... . . . . . ...... . ..................... . ........ . ..... . . . . .. . .. . . . . . ...... . . . .. . . . .... . . .... . .. .. . ..... . ....... . . ... .... . . . ..... . .. . .. . ..... . .. .... . .. . . ..... . . . . .. .. ... . . . .. .. . .. . . . . . . .
lowQualScore : 0 888 4 333333333 4 4444 4 888 888 2222222 9 4 4 4 4 4 8 44 888 4 0 999999999 2 4 66 3 3 3 3 66 888 66 888888888888888 00 6 22222222 5555555 00 444 00 6 3 00 9999999999999999999999999999 111111 00 5 999 6 66 6 6 6 6 444 9 888888888888 444 6 00 6 6 3 3 0000000000000 3 888 6 3 3 3 3 3 3 111111 3 3 3 3 3 555555 0 444444444444444444444 6 99999999 3 00000 3 7 7 3 66 7 66 3 1 1 1 9 111111 7 7 9 99 9 9 7 6666 9 7 1111 9 88 99 9 11111 9 3333333 7 9 999 1111 9 9 9 11111 9 99 1 44 9 66666 9 88 9999 1 55 1 8 99999 1 1 1 2 22 22 555 1 1 2 22 22 6 00 0 0 0 0 0 0 4
consensus : NNACTG-TTGGGAAAA---GA-AAGG-------ATA-CATAT----TTTAAA-TTCAG---TT---AACAT-------TTTAATTATTT-AAC-AA-T-A-TCAACGGATGTTC-TCTTCAAGAAN-TGTTT---C-TGAAGTCCAA-AT-CT-A-TTGTAATCAAGGCTTTCC--TTGCG-T-AG-AAAGTACC-G--TCCG---G--T---------------TTTCC--C-AG--------TTC-------AGC--AT---AA--A-ACTTCTTCAAT--TTAGA--T--AGAACAC---AT---------CGA------T--CTCCNTT---AAAGTA-A--TTT-CTCC-A-TTTCC-T---C-AATA-----T--T---A---G-T--TTCTCCATA-TCTTTCCACTAAGTAGT-CTCCAA-A---A--GCATTGTAGCCACTTT-CACA---ACATTTT-GTTTGT-TT-CTAC-TA-TC-TT--T---AGAGTCGA-CA-AGCG-C-AGCGAT------ATC-CTCGTCGTT--TAATGA--C-T---ATCTC-GTAAATAC-----TC-G-TTT--CG-AGACGAC-A-TATTGT-TGT-AGTGGAA--CTCTCTAGTGT--T-GCTAACGCTG-AAG-ATAC-CTTCAACC-AAT------CAAATT-AC-AGG-A--A-AT-CAAAACTGG-CG----T-C-A----AA-G--CGT--GCGG-GAAAT-----TA-T-------T-CG-A---AC---GG-GGAAT-AG-T-----C-AAAAA--ACTATT-CT-C---C-GGGA-A--ATAG----TTTGTTTA-T--TCA-CGAACAGT-GTA-AA-T-A-GCTA-TTTT--A--TC---TC-CTGAACG-T-CA--TA--TA-GGAAA--C-A-TTTT-TACAG-AA-G-TATAATAA
Reference ( family-1142 ) : NNACTG-TTGGGAAAA---GA-AAGA-------ATA-CATAT----TTTAAA-TTCAG---TT---AACAT-------TTTAATTATTT-AAC-AA-T-A-TCAACGGATGTTC-TCTTCAAGAAN-TGTTT---C-TGAAGTCCAA-AT-CT-A-TTGTAATCAAGGCTTTCC--TTGCG-T-AG-AAAGTACC-G--TCCG---G--T---------------TTTCC--C-AG--------TTC-------AGC--AT---AA--A-ACTTCTTCAAT--TTAGA--T--AGAACAC---AT---------CGA------T--CTCCNTT---AAAGTA-A--TTT-CTCC-A-TTTCC-T---C-AATA-----T--T---A---G-T--TTCTCCATA-TCTTTCCACTAAGTAGT-CTCCAA-A---A--GCATTGTAGCCACTTT-CACA---ACATTTT-GTTTGT-TT-CTAC-TA-TC-TT--T---AGAGTCGA-CA-AGCG-C-AGCGAT------ATC-CTCGTCGTT--TAATGA--C-T---ATCTC-GTAAATAC-----TC-G-TTT--CG-AGACGAC-A-TATTGT-TGT-AGTGGAA--CTCTCTAGTGT--T-GCTAACGCTG-AAG-ATAC-CTTCAACC-AAT------CAAATT-AC-AGG-A--A-AT-CAAAACTGG-CG----T-C-A----AA-G--CGT--GCGG-GAAAT-----TA-T-------T-CG-A---AC---GG-GGAAT-AG-T-----C-AAAAA--ACTATT-CT-C---C-GGGA-A--ATAG----TTTGTTTA-T--TCA-CGAACAGT-GTA-AA-T-A-GCTA-TTTT--A--TC---TC-CTGAACG-T-CA--TA--TA-GGAAA--C-A-TTTT-TACAG-AA-G-TATAATAA
gi|1 : CTGCTTGTGAAAA---GA-AAAG-------ATA-CAGATCAGTTTTAAA-TTCAGGTTTT---AGAAT-------TTTAAATATTT-AAC-AA-T-A-TCACCGGATGTT--TCTTCA-GAAC-TGTTTTCTC-TGAAGTCAGAGATGCT-A-AT-TACTGGGGGCTTTTCCTTTGCG-TGAG-GAA-TACC-GCGTCAG---G--T---------------TTTCT--C-AG--------TTC-------AGC--ATTGGAT--ATACTTCTTCAGTGTTCAGA-------AACAC---ATGATATCGACCGAA-----T--CTCCGTTG--AAAGTA-A--TTTTCTCT-AGTTTCCGT---C-A-TA-----T--T---A---G-T--TT-TCCATAATCTTTCCA-----------------A---A--GCA---------CTTT-TACACAAACATTTT-GTTTGTGTTACTAC-TAGTC-TT--TTATAG-GTCGAGCACAGCG-CGAGCGATGAATATATC-CTAGCC--------TGC--CGT---AACTCCGTAAATAC-----CCCG-TTTTGCG-AGACGACCA-TATTGTCTGTCAGTGGAAGACTCTCTAGTGTAATAGCTAACGCTGGAAGTATAC-CTTCAACC-AATA-----CAAAGT-AA-AGG-A--A-AT-CAAAACTGG-CG----TGC-A----AA-G--CGT--GCGG-GAAAT-----TA-G-------TGCG-A---AC---GG-GGAAT-AG-T-----C-AAAAA--AATATT-CT-C---C-GGG--A--ATAG----TTTG-TTA-TTGTCA-CGAACTGT-GTA-AA-T-A-GCTA-TTTTTAA--TCCTTTCTCTGAACG-T-CA--TA--TT-GGAAA--C-A-TTTT-TACAGAAA-G-T-TAATAA
gi|10 : CTG-TTGGAAAAG---GA-TAAG-------ATC-CATAT----TTTTAA-ATCAG---TT---AACAT-------TTTAATTATTTGAACAAA-A-A-TC-ACGGATGTTC-TCTTCAAG-AC-TGTTT---C-TGAAGTCCAA-AT-C-------TAATTAACGCTTT-C--TTACGTT-AG-AAAGTCCC-G--TCCG---G--T---------------TTT-C--C-AG--------TTC-------AGC--AT---AA--A-A-TTCTTCAAT--TTA-------CGAACACTCGAC---------CGA------T--CTCCATTTGGAAAGTA-A--TTT-CTCT-A-TT--C-T---CAAATA-----T--T---A---G-TAGTTATCCATA-TC-TTCCACTAAATAGTCCTTCAA-A---A---------AGCCACTTT-TACA---ACATTTT-CTTTGT-TT-CTACGTA-TCTTT--T---AG-------CG-AGCG-A-AGCGAa
gi|11 : tcatCCAA-AT--A--GAATTGTAGCCACTTT-CCTA---ACTTTTT-GTTTGT-TT-CTAC-TA-TC-TT--T---AGAATCGA-CA-AACG-C-AGCGAT------ATC-CTCGTCGTT--TAAT------------CTC-GTAAATGC-----T--G-TTT--CG-AGACGTC-A-TGTTGTACAT-AGTGGAA--CTCTCTAGTGT--T-GCTAACGCTG-AAT-ATATACTTCAACT-ATT------CAAATT-AC-AGG-A--A-AT-C-AAACTGG-CG----T-C-A----AA-G--CGT--GCGG-GAAAT-----TA-T-------T-CG-A---AC---GG-GGAAT-AG-T-----A-AAAAA--ACTATT-CT-C---T-GGGA-A--ATAgact
gi|12 : TTTC-GTAAATAC-----C------T--CG-AGACGAC-A-T-TTGT-TGT-AGTGGGA--ACCTCTAGTGT--T-ACTAACGATG-AAG-ATAC-CTTCAACC-AAT-------AAATT-AC-AGG----A-AT-C-AAACTGG-CGT---T-C-ATCTGAA-GC-CAT--GCAG-GAAAT-----TA-T-------T-CG-----AC------GGAAT-AGAT-----CAAAAAA--ACTATT-CT-----C-GGGG-A--ATAG----TTTGTTTATT--TCA-CGAAT-GTAGTA-AA-T---GCTATTTTT--A--TC---TC-CTGAACG-T-CA--TATTTT-GGAAA--C-ATTTTT-TACAG-AA-G-TATAATAt
gi|13 : c-----TT-G-TTT--TC-AGACGAC-A-TATAAT-TGC-AGTGGAA--CTCCCCAGTGT--T-GCTAAAGCTG-AAA-ATAA-CTTCAACC-AAT------CAAATT-AC-AGG-A--A-AT-CAAAACTGG-TG----T-C-A----AA-A--CGT--GCAG-GGAAT-----TA-T-------T-CG-A---AC---GG-GGAA--AG-T-----C--AAAA--ATTATA-TT-C---T-AGGA-A--ATAG----TTTGTTTA-T--TCA-CAAAGAGTAATA-AT-T-A-GCTC-TATT--A--TC---TC-CTGAACG-T-CA--TA--TA-GGAAA--CTT-TTTT-TACAG-AA-G-TGTAATAA
gi|14 : aAACGCT--AAG-ATAC-CTTCAACCCAACTGGTTGCAAAGT-AC-AGG-ACAG-AT-CACAACTGGGCAGAATT-CGA----AA-G--CATTGGCGGAGGAAT-----GA-CGCGACCCT-CG-AGGGAC---GG-AGAAT-AG-T-----C-ATAAA--ACTATTTCT-C---TTGGGA-A--ATAG----TTTGTTTA-T--TCA-CGAA-AGT-G-A-AA-A-A-GCTA-TTTT--ACTTCT--TC-CTGAACG-TCCA--TA--TA-GAAAA--
gi|15 : tattgaccggtcagagattttctcatactg--TTGCG-T-AG-ATAATACG-G--TCCG---A--T---------------TTTCC--A-AG--------TTC-------AGA--AT---ACTTG-TCTTCTTTAAT--CTAGA--------ACAC---AT---------CGA------T--CTCCTTTT--AAAGTA-A--TCT-CTTA-A-TTTCC-T---C-AATA-----T------A---G-T--CTCTCCATA-TCTTTTCACTAAGTGGT-TTCCAA-A---AAAGCATTGTAGCCCTTTT-CACA---ACATTTT-GTTTAT-TT-CTAC-TA-TC-TT--C---AGAGTTGA-TA-AGCG-C-
gi|16 : CAACC-AAT------CAAGTT-AC-AGG-A--A-AT-CAAAACTAG-CG----T-C-A----AA-G--AGT--GCGG-GAAAT-----TA-T-------T-CG-A---AA---GG-GGAAT-AG-T-----A-AAAAA--A------------------A-AT-ATAG----TTTGTTTA-T--TCA-CGAACTGT-GTA-AA-T-A-GCTA-TTTT--A--TC---TC-CTGAACG-T-CA--TA--TA-GGAAA--C-A-TTTT-TACAG-A-----ATAATA
gi|17 : ACTG-TTGGGAAAA---GA-AAGA--------TA-CATAT----CTTAAA-TTCAA---TG---AACAT-------TCAAATTGTTT-AAC-AC-T-A-TCAACGGATGTTC-TCC------GT-TGTTT---C-TGAAGTTCAA-CTATT-A-TTGTAATCAAGATTTTCC--TTGCG-T-AG-AAAGCACC-G--TCCG---G--T---------------TT
gi|18 : tcaACTG-TTGGAAAAA---GA-------------TA-CATAT----TTTAAA-TTCAA---TT---AACATCTTAAATTTTAATTATTT-AAA-AA-T-A-TCAACGGATGTTC-TCTTCAAGAAA-TGTTT---C-TGAAATCCAA-AT-AGAA-TTGTAGCCA---CTTTC
gi|19 : tcaTAG----TATGTTTC-T--TTA-TGAACAGC-AAA-AACT-A-GCTC-TTTT--G--TC---TC-CTGAGCG-T-CA--AA--TA-GGAAA--T-A-TTTT-TACAG-AA-G-TGTAATAA
gi|2 : aagaaacatgcttccACTG-TTGGGAAAA---GA-AAGAGACATATATAACATAT----TTTAAA-TTCAA---TT---AAAAT-------TTTAATCATTT-AAC-AA-T-A-TCAACGGATGTTC-TCTTCAAGAAA-TGTTT---C-TGAAGTCCAA-AT-CTTA-TTGTAATCAAGGTTTTCT--TTGCG-T-AG-AAAGCACC-A--TCCA---G--A---------------ATTCC--C-AG--------TTC-------AGC--AT---AA--A-ACTTCTTTAAT--TTAAA--TGTAGAACAC---AT---------TGA------T--CTCCTAT---AAAGTA-A--TTT-CTCC-A-TTTCC-T---C-AATAAAGATC--T---A---G-T--TTTTT-----TCTTTACTCTAAATAGT-CTCCAA-AT--A--GCATTGTAGCCACTTC-CACA---ACTTTTT-GTTTGT-TT-CTAC-TA-TC-TT--T---AGAATTGA-CA-AATG-C-AGCGAT------ATC-CTTGTCGTT--TCATGAGCCAT---ATTTC-GTAAATACATGTACT-G-TTT--CA-AGACGAC-A-TATTGT-TGT-AGTGGAA--CTCTCTAGTGT--T-GCTAACGCTG-GAG-ATAC-CTTCAACG-AAT------CAAATT-AC-AGG-A--A-AT-CAAAACTTG-CG----T-C-A----AA-G--CAT--GCAG-GAAAT-----TA-T-------T-CG-A---AA---GG-GGAAT-AG-T-----C-AAAAA--ACTATT-CC-C---T-GGGA-A--ATAG----TTTGTTAA-T--TCA-CGAACAGT-GTA-AA-T-A-GCTA-TTTT--A--TC---TC-CTGAACG-T-CA--TA--TA-GGAAA--C-A-TTTT-TACAG-AA-G-TATAATAAatattg
gi|20 : ctAATT-ACCAGG-A--AGAT-CAAA-CTGGGCG----T-C-A----AAAG--CGT--GCGG-GAAA------TA-T-------TACGAA---AC---GG-GGAATAAG-T-----A-AAAAT--ACTATT-CT-CT--T-GGGA-AATATAG----TTCGT
gi|21 : aggctACTG-TTGGGAAAAAAAGA-AAGG-------ATT-CATGT----TTTAAA-TTCAA---TT---AACA
gi|3 : ttcaTGGGAAAA---GA-AAGA--------TA-CACAT----TTTAAAATTCAG---TT---AACAT-------TTTAATTATTTTAAC-A--T-A-TCA-CGGATGTTC-TCTTCAAGAAC-TGCTT---C-CCAAGTC-AA-AC---------TAATTAACGCTTTCC--TTGCG-T-AG-AACGTACCCG--TCCG---G--T---------------TTTCCACC-AG--------TTTTTCA---AGC--AT---AA--A-ACTTTTTCAAT--TTAGACTT--A---CAC---AT---------CGACCGAGAT--CTCCATTG--AAAGTG-A--TTT-CTCTTA-TTTCC-T---CCAGTA-----T--T---ATAGG-T--TTTTTCCTA-TCTTTC-ACTAAATAGT-CTCCAA-A---A---------AGCCACTTTACA-A---ACATTTT-GTTTGT-T--CTAA-TA-TC-TT--T---ATA-TCGA-CA-AGCGGC-AACGAT------ATCTCTCGTAGCTCGTAA--A--C-T----TCT-----ATTAC-----T--G-TTT---G-AGACGAC-AATATTGT-TGT-AGTGGAA--CTCT-TAGTGT--T-ACTAACGCTG-AAG-ATAC-CTTCA-CC-AAT------CAAATTTAC-AGT-A--A-ATTCAAAACTGG-CGG---T-C-A----AA-GTCCGT--GCGG--AAAT-----TA-T-------T-CG-AT--AC----G-GGAAT-AG-T-----C-AAAAA--ACTATT--T-C---C-GGGG-A--ATAGT---TTTGTTTA-TTCTCA-CGAACAGT-GTA-AA-TAA-GCTA-TTTT--A--TC---TC-CTGAACG-TCCA--TA--TACGGAAA--A-A-TTTT-TACAG-AA-G-TATAA
gi|4 : cggTG-TTGGGAAAA---AAGAAGA-------ATA-C-TAT----TTTAAA-TTCAG---CTTAAAACAT-------TTTA-TTATTT-AAC-AA-CCA-TCAACGGATGATC-TCTTCAAGAAACTGTTT---C-TGAAGTCCAA-AT-C-------TAAT-AACGCTTTCC--TTTCG-T-AGAAAAGTACC-G--TTCG---GTTT---------------TTTCC--C-AG--------TTC-------AGCATAT---AA--A-ACTTCTTCAAT--TTAGA-------AACAC---ATCGAC-----CGA------T--CTCCATTGA-AAAGTA-AATTTC-CTCT-A--TTCC-T---CAAATA-----T--TATAA---GTT--TTTTCCA-----TTTCCACTAAATAGTCCTCCAA-A---A---------AGCCACTTT-TACA---ACATTTTGGTTTGT-TT-CTAC-TA--------A---ATACTCGA-C--AGCA-C-AGCGAT------ATC-C-------------------------TCTC-GTAAATAC------C-G-TTT--CG-AGAC-AC-ATTAGTGT-TGT-AGTGGAA--CTCTCTAGTGT--T-ACTAACGCTG-AAG-ATAC-CTTCAACC-AAT------CAAATT-AC-AGGAA--A-AT-CAAAACTGG-CGC---T-CAA----AA-G--AGT--GCGG-GAAAT-----TATT-------T-CG-A---AC---GGTGGAAT-AG-T-----C-AAAAA--ACTATT-CT-C---C-GGGGCA--ATAG----TTTGTTTA-T--TCACCGAACTGT-GT--AA-T-A-GCTATTTTT--A--TCT--TC-TTGAACGCT-CACCTA--TA-GGAAA--C-A-TTTTGTACAG-AAGG-TATAATAata
gi|5 : catctTTT-AAC-AAGT-AATCAACTGATGTCCCTCTTCAAAGAA-TGTTT---CATGGAGTCCGA-TC-TT-T-TTGTA-TCAAGGTTTTCA--TTGCG-T-AG-AAAGCACC-A--TCC----G--T---------------TTTCC--CAAG--------TCC-------AGC--AT---AA--A-AA--CTTTAAT--T---A--T--AGAAC------T---------CGA------T--CCCCGTA---AAAGTA-AT-TTT-CTCC-A-TGTCT-T---C--ATA--------T---A---G-T--TTCTTCATA-TCTTTACATGAAGT--C-CTCCAATA---AT-ACATTATAG-CACTTT-CACA--------CT-AGTTGT-TT-CTAC-TA-TC-TT--T---AGAATCGA-CA-GCTG-C-A-CAAT------ATC-CCCGTCG----TAATGAC-C-C---ATCTC-GTAAATAC-----TT-GTTTT--CGAAGACGAC---TACTA--TGT-AGTG------------------T-GCT-ACGCTG-AAG-ATAC-CATC-ACC--AT------CAAATT-AC-AGG-A--A-AT-CAAACGTGG-CG----C----------------------G-GAGAT-----TA-T-------T-TG-A---ACAAAAA-GAAAT-AG-TTTCCCC-AAAAAACACTATT-CG-C---T--GGA-A--ATAA----TTTGTTTA----TCA-CGAACTGT-TAA-AA-T-A-GCTA--ATT--A--TC---TC-TTGAACG-T-CA--TA--TA-GGAAAACC-A--TTT-TA-AG-AA-ATTATAA
gi|6 : at--TTGCG-T-AG-AAAATATG-G--TCCGATTG--T---------------TTTCC--C-AGTTCATGGTTTCTCAGTTGAGC--AT---AA--A-CCTTCTTTA----TTA----T--AGAAAAC---AT---------CGA------TTGCTC--------AAATATC--TTT-GTCC-A-TTTTT-TTTTC-AATA-----T------A---A-T--TTCACCATA-TCTTTTCACTAAGTAGT-TTCAGA-A---A--ACGTTATAGCCATTTT-TACA---ACATTTC-GTTT-T-TT-CTAC-TA-TC-TT--T---AGAGTCGA-CA-AGCG-C-AGCGAT------ATT-TTCGTCATT--TAACGA--C-TCGTATCTC-ATATATAG-----T--G-TTC--TG-ACACGAC-A-TATTGT-TGT-AGTGGAA--CTGCC-AGTGT--T-GCTGATGCTG-AAG-ATAC-CTTCAACC-AAT------CAAATT-AC-TGG-A--A-AT-CAAATCTAA-CG----T-C-A----AA-T--CGT--GAGG-GAAAT-----TA-T-------T-CT-A---AC---GG-GGAAT-AG-T-----C-AAACA--TATAGT-TTACTAAC-GGGG-A--ATAG----Ta
gi|6 : tctgattgtaaA-T--TCA-CGAACAGT--TAGAA-T-A-CCTC-TTTT--A--TC---TA-CTGTACG-G-CA--TA--Tcaaacatataatttacacatctgagaaatatatttttttttaattcacgaacagttagaatacctcttttatctactgtacggcatat
gi|7 : tctgattgtaattgcgtagaaaatatggtccgattgttttcccagttcatggtttctcagttgagcataaaccttctttattatagaaaacatcgattgctcaaatatctttgtccatttttttttcaatataatttcaccatatcttttcactaagtagtttcagaaaacgttatagccatttttacaacatttcgttttttctactatctttagagtcgacaagcgcagcgatattttcgtcatttaacgactcgtatctcatatatagtgttctgacacgacatattgttgtagtggaactgccagtgttgctgatgctgaagataccttcaaccaatcaaattactggaaatcaaatctaacgtcaaatcgtgagggaaattattctaacggggaatagtcaaacatatagtttactaacggggaatagtcaaacatataatttacacatctgagaaatatatttttttttaA-AT-CT-AATTTTAATCAAGGATATAT--TTGCG-T-AG-AAAATACG-G--CCCG---A--T---------------CTTCC--C-AG--------TTC-------AGC--AT---AA--A-ACTTGTTTAAT--TTGGA--------ACAA---AT---------CGA------T--CTCCCTTC--AAAGTT-A--TTT-TTCC-A-TTACA-T---T-AATA-----T------A---G-T--TTCTCCATA-TTTTTC-ACTAAGTAGT-TACCAA-AT--A--TCATTATAGTCATTTT-CACA---ACTTCTT-GTTT-T-TT-CTGC-TA-TC-TT--T---AGAGTTGA-GA-AGCG-A-AGCGAT------ATC-TTCGT---T--TAATGA--C-T---A-----GTA--T-C-----TC-A-TT-------AACGAT-A-TATTGT-TGT-AGTGGAA--CTTCCCAGTAT--T-CCTAAAGCTG-AAA-ATAA-CTTCAGCC-AAT------CAAATT-AT-AAG-G--A-AT-CAAAATTGG-TG----T-C-G----AA-G--CGG--GCGG-AAAATTACAGTA-T-------T-CG-A---AC---CA-GGAAT-AG-T-----C-AAAAC--ACTATT-TT-C---T-AGTA-T--ATAA----TTTGTTTA-T--TCA-CCAACAG--GAA-AA-A-ACGC-A--TTT--A--TT---TC-CTGAATG-T-CA--TA--TA-AGAAA--C-A-ATTT-TATAG-AA-G-TGTAATAA
gi|8 : c-A-TTGCAATCGAGGCTATCT--TTGCG-T-AG-AAAATACG-G--TCTG---A--TATTCCCAGTTCAGGGTTTCT--C-AG--------TTC-------AGC--AT---AA--A-ACGTCTTTA----TTA----T--AGAAAAC---AT---------CGA------T--TTCCCTT---CAAATT-A--TTT-GTCC-A-ATTCC-T---C-AATA-----T--G---A-----T--CTCTCAATA-TCTTTTCACTATGCAGT-TTCCAA-AGAAA--ACATTATAGCCATTTT-CACA---AC-TTTT-GGTTGT-TT-TAAC-TA-TC-TT--C---AGAGTTAG-GA-AACA-C-AGCGAT------AGC-TTCATCATT--TAATGA--C-TCTTATCTT-ATAAACAC-----T--G-TTT--TA-AGACGAC-A-TATTGT-TGT-AGTGGAA--CTGCC-AGTGT--T-GCTGATGCTG-AAG-ATAC-CTTCAACC-AAT------CAAATT-AG-TAG-A--A-AT-CAAAACCCA-TC----T-C-A----AA-G--CGT--GTGG-GGGTT-----TA-T-------T-CG-A---AC---GG-GGAAT-AC-T-----C-AAAAA----TATT-AT-C---T-GAGA-A--ATAGGTTTTTTTTTTA-T--CCA-CGAACAGT--TAGAA-T-A-CCTC-TTTT--A--TC---TA-TTGTACG-T-CA--TA--Ta
gi|9 : gCTG-TTGGGGGAA---AA-AAAG-------ATA-CATAT----TATAAA-TTCAG---TT---AACAT-------TTTAATTATTT-AAC-AA-T-A-TCAACGGATGTTC-TCTTCAAGAAC-TGTTT---C-TGAAGTCCAA-AT-C-------TAATTAACGCTTTCC--TTGCG-T-AG-AAAGTACC-G--TCCG---G--T---------------TTTCC--C-AT--------TTC-------AGC--AT---AA--A-ACTTCTTCAAT--TTAAA--T--AGAA-GC-------------------------------------------A--TTT-CTCT-A-CTTCC-T---C-AATA-----TTAT---A---G-T--TTTTCCATA-TCTTTCCACTAAATAGT-CTCCAA-A---A---------AGCCACTTT-TACA---ACATTTT-GTTTGT-TT-CTAC-TA-TC-TTTAT---ATAGTCGA-CA-AGCG-C-AGCAAT------ATC-CTC-TCG----TAA-------------CTC-GTAAATATA----CC-G-TTT--CG-AGACTAC-A-TATTGT-TGT-AGTGGAA--CTCTCTAGTGT--T-ACTAACGCTG-AGG-ATAC-CTTCAACC-AAT------CAAATT-AC-AG
Alignments
lowQualScore : 11 1111111 1111111 333333333 222222222222222 11111111 1111111 3333333333333333333333333333 111111 222 1 222222222222 3333333333333 111111 555555555555555555555 22222222 111111 1111 11111 111
lowQualScore : 5 777 4 00 4444444 9999 4 777 777 6666666 8 4 4 4 4 4 0 55 777 4 4 999999999 1 1 44 3 3 3 3 44 555 44 000000000000000 55 3 33333333 9999999 55 666 55 3 1 55 4444444444444444444444444444 444444 55 3 555 3 88 3 3 3 3 666 0 333333333333 666 3 55 2 3 7 3 9999999999999 3 555 3 3 3 3 3 3 3 666666 2 3 3 3 3 111111 4 000000000000000000000 3 99999999 3 55555 3 6 6 3 44 3 44 3 3 3 3 2 111111 2 2 2 33 2 2 5 4444 2 5 6666 2 66 33 2 77777 2 9999999 5 2 777 5555 2 2 2 77777 2 33 0 33 2 11111 2 66 8888 3 88 3 2 99999 3 3 3 6 44 44 111 3 3 6 44 44 3 55 4 4 4 4 4 4 0
lowQualScore : . ... . .. ....... .... . ... ... ....... . . . . . . . .. ... . . ......... . . .. . . . . .. ... .. ............... .. . ........ ....... .. ... .. . . .. ............................ ...... .. . ... . .. . . . . ... . ............ ... . .. . . . . ............. . ... . . . . . . . ...... . . . . . ...... . ..................... . ........ . ..... . . . . .. . .. . . . . . ...... . . . .. . . . .... . . .... . .. .. . ..... . ....... . . ... .... . . . ..... . .. . .. . ..... . .. .... . .. . . ..... . . . . .. .. ... . . . .. .. . .. . . . . . . .
lowQualScore : 0 888 4 11 4444444 4444 4 888 888 2222222 9 4 4 4 4 4 8 44 888 4 0 999999999 2 4 66 3 3 3 3 66 888 66 888888888888888 00 6 22222222 5555555 00 444 00 6 3 00 9999999999999999999999999999 111111 00 5 999 6 66 6 6 6 6 444 9 888888888888 444 6 00 6 6 3 3 0000000000000 3 888 6 3 3 3 3 3 3 111111 3 3 3 3 3 555555 0 444444444444444444444 6 99999999 3 00000 3 7 7 3 66 7 66 3 1 1 1 9 111111 7 7 9 99 9 9 7 6666 9 7 1111 9 88 99 9 11111 9 3333333 7 9 999 1111 9 9 9 11111 9 99 1 44 9 66666 9 88 9999 1 55 1 8 99999 1 1 1 2 22 22 555 1 1 2 22 22 6 00 0 0 0 0 0 0 4
consensus : NNACTG-TTGGGAAAA---GA-AAG-GATA-------CATAT----TTTAAA-TTCAG---TT---AACAT-------TTTAATTATTT-AAC-AA-T-A-TCAACGGATGTTC-TCTTCAAGAAN-TGTTT---C-TGAAGTCCAA-AT-CT-A-TTGTAATCAAGGCTTTCC--TTGCG-T-AG-AAAGTACC-G--TCCG---G--T---------------TTTCC--C-AG--------TTC-------AGC--AT---AA--A-ACTTCTTCAAT--TTAGA--T--AGAACAC---AT---------CGA------T--CTCCNTT---AAAGTA-A--TTT-CTCC-A-TTTCC-T---C-AATA-----T--T---A---G-T--TTCTCCATA-TCTTTCCACTAAGTAGT-CTCCAA-A---A--GCATTGTAGCCACTTT-CACA---ACATTTT-GTTTGT-TT-CTAC-TA-TC-TT--T---AGAGTCGA-CA-AGCG-C-AGCGAT------ATC-CTCGTCGTT--TAATGA--C-T---ATCTC-GTAAATAC-----TC-G-TTT--CG-AGACGAC-A-TATTGT-TGT-AGTGGAA--CTCTCTAGTGT--T-GCTAACGCTG-AAG-ATAC-CTTCAACC-AAT------CAAATT-AC-AGG-A--A-AT-CAAAACTGG-CG----T-C-A----AA-G--CGT--GCGG-GAAAT-----TA-T-------T-CG-A---AC---GG-GGAAT-AG-T-----C-AAAAA--ACTATT-CT-C---C-GGGA-A--ATAG----TTTGTTTA-T--TCA-CGAACAGT-GTA-AA-T-A-GCTA-TTTT--A--TC---TC-CTGAACG-T-CA--TA--TA-GGAAA--C-A-TTTT-TACAG-AA-G-TATAATAA
Reference ( family-1142 ) : NNACTG-TTGGGAAAA---GA-AAG-GATA-------CATAT----TTTAAA-TTCAG---TT---AACAT-------TTTAATTATTT-AAC-AA-T-A-TCAACGGATGTTC-TCTTCAAGAAN-TGTTT---C-TGAAGTCCAA-AT-CT-A-TTGTAATCAAGGCTTTCC--TTGCG-T-AG-AAAGTACC-G--TCCG---G--T---------------TTTCC--C-AG--------TTC-------AGC--AT---AA--A-ACTTCTTCAAT--TTAGA--T--AGAACAC---AT---------CGA------T--CTCCNTT---AAAGTA-A--TTT-CTCC-A-TTTCC-T---C-AATA-----T--T---A---G-T--TTCTCCATA-TCTTTCCACTAAGTAGT-CTCCAA-A---A--GCATTGTAGCCACTTT-CACA---ACATTTT-GTTTGT-TT-CTAC-TA-TC-TT--T---AGAGTCGA-CA-AGCG-C-AGCGAT------ATC-CTCGTCGTT--TAATGA--C-T---ATCTC-GTAAATAC-----TC-G-TTT--CG-AGACGAC-A-TATTGT-TGT-AGTGGAA--CTCTCTAGTGT--T-GCTAACGCTG-AAG-ATAC-CTTCAACC-AAT------CAAATT-AC-AGG-A--A-AT-CAAAACTGG-CG----T-C-A----AA-G--CGT--GCGG-GAAAT-----TA-T-------T-CG-A---AC---GG-GGAAT-AG-T-----C-AAAAA--ACTATT-CT-C---C-GGGA-A--ATAG----TTTGTTTA-T--TCA-CGAACAGT-GTA-AA-T-A-GCTA-TTTT--A--TC---TC-CTGAACG-T-CA--TA--TA-GGAAA--C-A-TTTT-TACAG-AA-G-TATAATAA
gi|1 : CTGCTTGTGAAAA---GA-AAA-GATA-------CAGATCAGTTTTAAA-TTCAGGTTTT---AGAAT-------TTTAAATATTT-AAC-AA-T-A-TCACCGGATGTT--TCTTCA-GAAC-TGTTTTCTC-TGAAGTCAGAGATGCT-A-AT-TACTGGGGGCTTTTCCTTTGCG-TGAG-GAA-TACC-GCGTCAG---G--T---------------TTTCT--C-AG--------TTC-------AGC--ATTGGAT--ATACTTCTTCAGTGTTCAGA-------AACAC---ATGATATCGACCGAA-----T--CTCCGTTG--AAAGTA-A--TTTTCTCT-AGTTTCCGT---C-A-TA-----T--T---A---G-T--TT-TCCATAATCTTTCCA-----------------A---A--GCA---------CTTT-TACACAAACATTTT-GTTTGTGTTACTAC-TAGTC-TT--TTATAG-GTCGAGCACAGCG-CGAGCGATGAATATATC-CTAGCC--------TGC--CGT---AACTCCGTAAATAC-----CCCG-TTTTGCG-AGACGACCA-TATTGTCTGTCAGTGGAAGACTCTCTAGTGTAATAGCTAACGCTGGAAGTATAC-CTTCAACC-AATA-----CAAAGT-AA-AGG-A--A-AT-CAAAACTGG-CG----TGC-A----AA-G--CGT--GCGG-GAAAT-----TA-G-------TGCG-A---AC---GG-GGAAT-AG-T-----C-AAAAA--AATATT-CT-C---C-GGG--A--ATAG----TTTG-TTA-TTGTCA-CGAACTGT-GTA-AA-T-A-GCTA-TTTTTAA--TCCTTTCTCTGAACG-T-CA--TA--TT-GGAAA--C-A-TTTT-TACAGAAA-G-T-TAATAA
gi|10 : CTG-TTGGAAAAG---GA-TAA-GATC-------CATAT----TTTTAA-ATCAG---TT---AACAT-------TTTAATTATTTGAACAAA-A-A-TC-ACGGATGTTC-TCTTCAAG-AC-TGTTT---C-TGAAGTCCAA-AT-C-------TAATTAACGCTTT-C--TTACGTT-AG-AAAGTCCC-G--TCCG---G--T---------------TTT-C--C-AG--------TTC-------AGC--AT---AA--A-A-TTCTTCAAT--TTA-------CGAACACTCGAC---------CGA------T--CTCCATTTGGAAAGTA-A--TTT-CTCT-A-TT--C-T---CAAATA-----T--T---A---G-TAGTTATCCATA-TC-TTCCACTAAATAGTCCTTCAA-A---A---------AGCCACTTT-TACA---ACATTTT-CTTTGT-TT-CTACGTA-TCTTT--T---AG-------CG-AGCG-A-AGCGAa
gi|11 : tcatCCAA-AT--A--GAATTGTAGCCACTTT-CCTA---ACTTTTT-GTTTGT-TT-CTAC-TA-TC-TT--T---AGAATCGA-CA-AACG-C-AGCGAT------ATC-CTCGTCGTT--TAAT------------CTC-GTAAATGC-----T--G-TTT--CG-AGACGTC-A-TGTTGTACAT-AGTGGAA--CTCTCTAGTGT--T-GCTAACGCTG-AAT-ATATACTTCAACT-ATT------CAAATT-AC-AGG-A--A-AT-C-AAACTGG-CG----T-C-A----AA-G--CGT--GCGG-GAAAT-----TA-T-------T-CG-A---AC---GG-GGAAT-AG-T-----A-AAAAA--ACTATT-CT-C---T-GGGA-A--ATAgact
gi|12 : TTTC-GTAAATAC-----C------T--CG-AGACGAC-A-T-TTGT-TGT-AGTGGGA--ACCTCTAGTGT--T-ACTAACGATG-AAG-ATAC-CTTCAACC-AAT-------AAATT-AC-AGG----A-AT-C-AAACTGG-CGT---T-C-ATCTGAA-GC-CAT--GCAG-GAAAT-----TA-T-------T-CG-----AC------GGAAT-AGAT-----CAAAAAA--ACTATT-CT-----C-GGGG-A--ATAG----TTTGTTTATT--TCA-CGAAT-GTAGTA-AA-T---GCTATTTTT--A--TC---TC-CTGAACG-T-CA--TATTTT-GGAAA--C-ATTTTT-TACAG-AA-G-TATAATAt
gi|13 : c-----TT-G-TTT--TC-AGACGAC-A-TATAAT-TGC-AGTGGAA--CTCCCCAGTGT--T-GCTAAAGCTG-AAA-ATAA-CTTCAACC-AAT------CAAATT-AC-AGG-A--A-AT-CAAAACTGG-TG----T-C-A----AA-A--CGT--GCAG-GGAAT-----TA-T-------T-CG-A---AC---GG-GGAA--AG-T-----C--AAAA--ATTATA-TT-C---T-AGGA-A--ATAG----TTTGTTTA-T--TCA-CAAAGAGTAATA-AT-T-A-GCTC-TATT--A--TC---TC-CTGAACG-T-CA--TA--TA-GGAAA--CTT-TTTT-TACAG-AA-G-TGTAATAA
gi|14 : aAACGCT--AAG-ATAC-CTTCAACCCAACTGGTTGCAAAGT-AC-AGG-ACAG-AT-CACAACTGGGCAGAATT-CGA----AA-G--CATTGGCGGAGGAAT-----GA-CGCGACCCT-CG-AGGGAC---GG-AGAAT-AG-T-----C-ATAAA--ACTATTTCT-C---TTGGGA-A--ATAG----TTTGTTTA-T--TCA-CGAA-AGT-G-A-AA-A-A-GCTA-TTTT--ACTTCT--TC-CTGAACG-TCCA--TA--TA-GAAAA--
gi|15 : tattgaccggtcagagattttctcatactg--TTGCG-T-AG-ATAATACG-G--TCCG---A--T---------------TTTCC--A-AG--------TTC-------AGA--AT---ACTTG-TCTTCTTTAAT--CTAGA--------ACAC---AT---------CGA------T--CTCCTTTT--AAAGTA-A--TCT-CTTA-A-TTTCC-T---C-AATA-----T------A---G-T--CTCTCCATA-TCTTTTCACTAAGTGGT-TTCCAA-A---AAAGCATTGTAGCCCTTTT-CACA---ACATTTT-GTTTAT-TT-CTAC-TA-TC-TT--C---AGAGTTGA-TA-AGCG-C-
gi|16 : CAACC-AAT------CAAGTT-AC-AGG-A--A-AT-CAAAACTAG-CG----T-C-A----AA-G--AGT--GCGG-GAAAT-----TA-T-------T-CG-A---AA---GG-GGAAT-AG-T-----A-AAAAA--A------------------A-AT-ATAG----TTTGTTTA-T--TCA-CGAACTGT-GTA-AA-T-A-GCTA-TTTT--A--TC---TC-CTGAACG-T-CA--TA--TA-GGAAA--C-A-TTTT-TACAG-A-----ATAATA
gi|17 : ACTG-TTGGGAAAA---GA-AAG--ATA-------CATAT----CTTAAA-TTCAA---TG---AACAT-------TCAAATTGTTT-AAC-AC-T-A-TCAACGGATGTTC-TCC------GT-TGTTT---C-TGAAGTTCAA-CTATT-A-TTGTAATCAAGATTTTCC--TTGCG-T-AG-AAAGCACC-G--TCCG---G--T---------------TT
gi|18 : tcaACTG-TTGGAAAAA---GA-------TA-------CATAT----TTTAAA-TTCAA---TT---AACATCTTAAATTTTAATTATTT-AAA-AA-T-A-TCAACGGATGTTC-TCTTCAAGAAA-TGTTT---C-TGAAATCCAA-AT-AGAA-TTGTAGCCA---CTTTC
gi|19 : tcaTAG----TATGTTTC-T--TTA-TGAACAGC-AAA-AACT-A-GCTC-TTTT--G--TC---TC-CTGAGCG-T-CA--AA--TA-GGAAA--T-A-TTTT-TACAG-AA-G-TGTAATAA
gi|2 : aagaaacatgcttccACTG-TTGGGAAAA---GA-AAGAGACATATATAACATAT----TTTAAA-TTCAA---TT---AAAAT-------TTTAATCATTT-AAC-AA-T-A-TCAACGGATGTTC-TCTTCAAGAAA-TGTTT---C-TGAAGTCCAA-AT-CTTA-TTGTAATCAAGGTTTTCT--TTGCG-T-AG-AAAGCACC-A--TCCA---G--A---------------ATTCC--C-AG--------TTC-------AGC--AT---AA--A-ACTTCTTTAAT--TTAAA--TGTAGAACAC---AT---------TGA------T--CTCCTAT---AAAGTA-A--TTT-CTCC-A-TTTCC-T---C-AATAAAGATC--T---A---G-T--TTTTT-----TCTTTACTCTAAATAGT-CTCCAA-AT--A--GCATTGTAGCCACTTC-CACA---ACTTTTT-GTTTGT-TT-CTAC-TA-TC-TT--T---AGAATTGA-CA-AATG-C-AGCGAT------ATC-CTTGTCGTT--TCATGAGCCAT---ATTTC-GTAAATACATGTACT-G-TTT--CA-AGACGAC-A-TATTGT-TGT-AGTGGAA--CTCTCTAGTGT--T-GCTAACGCTG-GAG-ATAC-CTTCAACG-AAT------CAAATT-AC-AGG-A--A-AT-CAAAACTTG-CG----T-C-A----AA-G--CAT--GCAG-GAAAT-----TA-T-------T-CG-A---AA---GG-GGAAT-AG-T-----C-AAAAA--ACTATT-CC-C---T-GGGA-A--ATAG----TTTGTTAA-T--TCA-CGAACAGT-GTA-AA-T-A-GCTA-TTTT--A--TC---TC-CTGAACG-T-CA--TA--TA-GGAAA--C-A-TTTT-TACAG-AA-G-TATAATAAatattg
gi|20 : ctAATT-ACCAGG-A--AGAT-CAAA-CTGGGCG----T-C-A----AAAG--CGT--GCGG-GAAA------TA-T-------TACGAA---AC---GG-GGAATAAG-T-----A-AAAAT--ACTATT-CT-CT--T-GGGA-AATATAG----TTCGT
gi|21 : aggctACTG-TTGGGAAAAAAAGA-AAG-GATT-------CATGT----TTTAAA-TTCAA---TT---AACA
gi|3 : ttcaTGGGAAAA---GA-AAG--ATA-------CACAT----TTTAAAATTCAG---TT---AACAT-------TTTAATTATTTTAAC-A--T-A-TCA-CGGATGTTC-TCTTCAAGAAC-TGCTT---C-CCAAGTC-AA-AC---------TAATTAACGCTTTCC--TTGCG-T-AG-AACGTACCCG--TCCG---G--T---------------TTTCCACC-AG--------TTTTTCA---AGC--AT---AA--A-ACTTTTTCAAT--TTAGACTT--A---CAC---AT---------CGACCGAGAT--CTCCATTG--AAAGTG-A--TTT-CTCTTA-TTTCC-T---CCAGTA-----T--T---ATAGG-T--TTTTTCCTA-TCTTTC-ACTAAATAGT-CTCCAA-A---A---------AGCCACTTTACA-A---ACATTTT-GTTTGT-T--CTAA-TA-TC-TT--T---ATA-TCGA-CA-AGCGGC-AACGAT------ATCTCTCGTAGCTCGTAA--A--C-T----TCT-----ATTAC-----T--G-TTT---G-AGACGAC-AATATTGT-TGT-AGTGGAA--CTCT-TAGTGT--T-ACTAACGCTG-AAG-ATAC-CTTCA-CC-AAT------CAAATTTAC-AGT-A--A-ATTCAAAACTGG-CGG---T-C-A----AA-GTCCGT--GCGG--AAAT-----TA-T-------T-CG-AT--AC----G-GGAAT-AG-T-----C-AAAAA--ACTATT--T-C---C-GGGG-A--ATAGT---TTTGTTTA-TTCTCA-CGAACAGT-GTA-AA-TAA-GCTA-TTTT--A--TC---TC-CTGAACG-TCCA--TA--TACGGAAA--A-A-TTTT-TACAG-AA-G-TATAA
gi|4 : cggTG-TTGGGAAAA---AAGAAG-AATA-------C-TAT----TTTAAA-TTCAG---CTTAAAACAT-------TTTA-TTATTT-AAC-AA-CCA-TCAACGGATGATC-TCTTCAAGAAACTGTTT---C-TGAAGTCCAA-AT-C-------TAAT-AACGCTTTCC--TTTCG-T-AGAAAAGTACC-G--TTCG---GTTT---------------TTTCC--C-AG--------TTC-------AGCATAT---AA--A-ACTTCTTCAAT--TTAGA-------AACAC---ATCGAC-----CGA------T--CTCCATTGA-AAAGTA-AATTTC-CTCT-A--TTCC-T---CAAATA-----T--TATAA---GTT--TTTTCCA-----TTTCCACTAAATAGTCCTCCAA-A---A---------AGCCACTTT-TACA---ACATTTTGGTTTGT-TT-CTAC-TA--------A---ATACTCGA-C--AGCA-C-AGCGAT------ATC-C-------------------------TCTC-GTAAATAC------C-G-TTT--CG-AGAC-AC-ATTAGTGT-TGT-AGTGGAA--CTCTCTAGTGT--T-ACTAACGCTG-AAG-ATAC-CTTCAACC-AAT------CAAATT-AC-AGGAA--A-AT-CAAAACTGG-CGC---T-CAA----AA-G--AGT--GCGG-GAAAT-----TATT-------T-CG-A---AC---GGTGGAAT-AG-T-----C-AAAAA--ACTATT-CT-C---C-GGGGCA--ATAG----TTTGTTTA-T--TCACCGAACTGT-GT--AA-T-A-GCTATTTTT--A--TCT--TC-TTGAACGCT-CACCTA--TA-GGAAA--C-A-TTTTGTACAG-AAGG-TATAATAata
gi|5 : catctTTT-AAC-AAGT-AATCAACTGATGTCCCTCTTCAAAGAA-TGTTT---CATGGAGTCCGA-TC-TT-T-TTGTA-TCAAGGTTTTCA--TTGCG-T-AG-AAAGCACC-A--TCC----G--T---------------TTTCC--CAAG--------TCC-------AGC--AT---AA--A-AA--CTTTAAT--T---A--T--AGAAC------T---------CGA------T--CCCCGTA---AAAGTA-AT-TTT-CTCC-A-TGTCT-T---C--ATA--------T---A---G-T--TTCTTCATA-TCTTTACATGAAGT--C-CTCCAATA---AT-ACATTATAG-CACTTT-CACA--------CT-AGTTGT-TT-CTAC-TA-TC-TT--T---AGAATCGA-CA-GCTG-C-A-CAAT------ATC-CCCGTCG----TAATGAC-C-C---ATCTC-GTAAATAC-----TT-GTTTT--CGAAGACGAC---TACTA--TGT-AGTG------------------T-GCT-ACGCTG-AAG-ATAC-CATC-ACC--AT------CAAATT-AC-AGG-A--A-AT-CAAACGTGG-CG----C----------------------G-GAGAT-----TA-T-------T-TG-A---ACAAAAA-GAAAT-AG-TTTCCCC-AAAAAACACTATT-CG-C---T--GGA-A--ATAA----TTTGTTTA----TCA-CGAACTGT-TAA-AA-T-A-GCTA--ATT--A--TC---TC-TTGAACG-T-CA--TA--TA-GGAAAACC-A--TTT-TA-AG-AA-ATTATAA
gi|6 : at--TTGCG-T-AG-AAAATATG-G--TCCGATTG--T---------------TTTCC--C-AGTTCATGGTTTCTCAGTTGAGC--AT---AA--A-CCTTCTTTA----TTA----T--AGAAAAC---AT---------CGA------TTGCTC--------AAATATC--TTT-GTCC-A-TTTTT-TTTTC-AATA-----T------A---A-T--TTCACCATA-TCTTTTCACTAAGTAGT-TTCAGA-A---A--ACGTTATAGCCATTTT-TACA---ACATTTC-GTTT-T-TT-CTAC-TA-TC-TT--T---AGAGTCGA-CA-AGCG-C-AGCGAT------ATT-TTCGTCATT--TAACGA--C-TCGTATCTC-ATATATAG-----T--G-TTC--TG-ACACGAC-A-TATTGT-TGT-AGTGGAA--CTGCC-AGTGT--T-GCTGATGCTG-AAG-ATAC-CTTCAACC-AAT------CAAATT-AC-TGG-A--A-AT-CAAATCTAA-CG----T-C-A----AA-T--CGT--GAGG-GAAAT-----TA-T-------T-CT-A---AC---GG-GGAAT-AG-T-----C-AAACA--TATAGT-TTACTAAC-GGGG-A--ATAG----Ta
gi|6 : tctgattgtaaA-T--TCA-CGAACAGT--TAGAA-T-A-CCTC-TTTT--A--TC---TA-CTGTACG-G-CA--TA--Tcaaacatataatttacacatctgagaaatatatttttttttaattcacgaacagttagaatacctcttttatctactgtacggcatat
gi|7 : tctgattgtaattgcgtagaaaatatggtccgattgttttcccagttcatggtttctcagttgagcataaaccttctttattatagaaaacatcgattgctcaaatatctttgtccatttttttttcaatataatttcaccatatcttttcactaagtagtttcagaaaacgttatagccatttttacaacatttcgttttttctactatctttagagtcgacaagcgcagcgatattttcgtcatttaacgactcgtatctcatatatagtgttctgacacgacatattgttgtagtggaactgccagtgttgctgatgctgaagataccttcaaccaatcaaattactggaaatcaaatctaacgtcaaatcgtgagggaaattattctaacggggaatagtcaaacatatagtttactaacggggaatagtcaaacatataatttacacatctgagaaatatatttttttttaA-AT-CT-AATTTTAATCAAGGATATAT--TTGCG-T-AG-AAAATACG-G--CCCG---A--T---------------CTTCC--C-AG--------TTC-------AGC--AT---AA--A-ACTTGTTTAAT--TTGGA--------ACAA---AT---------CGA------T--CTCCCTTC--AAAGTT-A--TTT-TTCC-A-TTACA-T---T-AATA-----T------A---G-T--TTCTCCATA-TTTTTC-ACTAAGTAGT-TACCAA-AT--A--TCATTATAGTCATTTT-CACA---ACTTCTT-GTTT-T-TT-CTGC-TA-TC-TT--T---AGAGTTGA-GA-AGCG-A-AGCGAT------ATC-TTCGT---T--TAATGA--C-T---A-----GTA--T-C-----TC-A-TT-------AACGAT-A-TATTGT-TGT-AGTGGAA--CTTCCCAGTAT--T-CCTAAAGCTG-AAA-ATAA-CTTCAGCC-AAT------CAAATT-AT-AAG-G--A-AT-CAAAATTGG-TG----T-C-G----AA-G--CGG--GCGG-AAAATTACAGTA-T-------T-CG-A---AC---CA-GGAAT-AG-T-----C-AAAAC--ACTATT-TT-C---T-AGTA-T--ATAA----TTTGTTTA-T--TCA-CCAACAG--GAA-AA-A-ACGC-A--TTT--A--TT---TC-CTGAATG-T-CA--TA--TA-AGAAA--C-A-ATTT-TATAG-AA-G-TGTAATAA
gi|8 : c-A-TTGCAATCGAGGCTATCT--TTGCG-T-AG-AAAATACG-G--TCTG---A--TATTCCCAGTTCAGGGTTTCT--C-AG--------TTC-------AGC--AT---AA--A-ACGTCTTTA----TTA----T--AGAAAAC---AT---------CGA------T--TTCCCTT---CAAATT-A--TTT-GTCC-A-ATTCC-T---C-AATA-----T--G---A-----T--CTCTCAATA-TCTTTTCACTATGCAGT-TTCCAA-AGAAA--ACATTATAGCCATTTT-CACA---AC-TTTT-GGTTGT-TT-TAAC-TA-TC-TT--C---AGAGTTAG-GA-AACA-C-AGCGAT------AGC-TTCATCATT--TAATGA--C-TCTTATCTT-ATAAACAC-----T--G-TTT--TA-AGACGAC-A-TATTGT-TGT-AGTGGAA--CTGCC-AGTGT--T-GCTGATGCTG-AAG-ATAC-CTTCAACC-AAT------CAAATT-AG-TAG-A--A-AT-CAAAACCCA-TC----T-C-A----AA-G--CGT--GTGG-GGGTT-----TA-T-------T-CG-A---AC---GG-GGAAT-AC-T-----C-AAAAA----TATT-AT-C---T-GAGA-A--ATAGGTTTTTTTTTTA-T--CCA-CGAACAGT--TAGAA-T-A-CCTC-TTTT--A--TC---TA-TTGTACG-T-CA--TA--Ta
gi|9 : gCTG-TTGGGGGAA---AA-AAA-GATA-------CATAT----TATAAA-TTCAG---TT---AACAT-------TTTAATTATTT-AAC-AA-T-A-TCAACGGATGTTC-TCTTCAAGAAC-TGTTT---C-TGAAGTCCAA-AT-C-------TAATTAACGCTTTCC--TTGCG-T-AG-AAAGTACC-G--TCCG---G--T---------------TTTCC--C-AT--------TTC-------AGC--AT---AA--A-ACTTCTTCAAT--TTAAA--T--AGAA-GC-------------------------------------------A--TTT-CTCT-A-CTTCC-T---C-AATA-----TTAT---A---G-T--TTTTCCATA-TCTTTCCACTAAATAGT-CTCCAA-A---A---------AGCCACTTT-TACA---ACATTTT-GTTTGT-TT-CTAC-TA-TC-TTTAT---ATAGTCGA-CA-AGCG-C-AGCAAT------ATC-CTC-TCG----TAA-------------CTC-GTAAATATA----CC-G-TTT--CG-AGACTAC-A-TATTGT-TGT-AGTGGAA--CTCTCTAGTGT--T-ACTAACGCTG-AGG-ATAC-CTTCAACC-AAT------CAAATT-AC-AG
Alignments
lowQualScore : 11 1111111 1111111 333333333 222222222222222 11111111 1111111 3333333333333333333333333333 111111 222 1 222222222222 3333333333333 111111 555555555555555555555 22222222 111111 1111 11111 111
lowQualScore : 5 777 4 00 4444444 9999 4 777 777 6666666 8 4 4 4 4 4 0 55 777 4 4 999999999 1 1 44 3 3 3 3 44 555 44 000000000000000 55 3 33333333 9999999 55 666 55 3 1 55 4444444444444444444444444444 444444 55 3 555 3 88 3 3 3 3 666 0 333333333333 666 3 55 2 3 7 3 9999999999999 3 555 3 3 3 3 3 3 3 666666 2 3 3 3 3 111111 4 000000000000000000000 3 99999999 3 55555 3 6 6 3 44 3 44 3 3 3 3 2 111111 2 2 2 33 2 2 5 4444 2 5 6666 2 66 33 2 77777 2 9999999 5 2 777 5555 2 2 2 77777 2 33 0 33 2 11111 2 66 8888 3 88 3 2 99999 3 3 3 6 44 44 111 3 3 6 44 44 3 55 4 4 4 4 4 4 0
lowQualScore : . ... . .. ....... .... . ... ... ....... . . . . . . . .. ... . . ......... . . .. . . . . .. ... .. ............... .. . ........ ....... .. ... .. . . .. ............................ ...... .. . ... . .. . . . . ... . ............ ... . .. . . . . ............. . ... . . . . . . . ...... . . . . . ...... . ..................... . ........ . ..... . . . . .. . .. . . . . . ...... . . . .. . . . .... . . .... . .. .. . ..... . ....... . . ... .... . . . ..... . .. . .. . ..... . .. .... . .. . . ..... . . . . .. .. ... . . . .. .. . .. . . . . . . .
lowQualScore : 0 888 4 11 4444444 4444 4 888 888 2222222 9 4 4 4 4 4 8 44 888 4 0 999999999 2 4 66 3 3 3 3 66 888 66 888888888888888 00 6 22222222 5555555 00 444 00 6 3 00 9999999999999999999999999999 111111 00 5 999 6 66 6 6 6 6 444 9 888888888888 444 6 00 6 6 3 3 0000000000000 3 888 6 3 3 3 3 3 3 111111 3 3 3 3 3 555555 0 444444444444444444444 6 99999999 3 00000 3 7 7 3 66 7 66 3 1 1 1 9 111111 7 7 9 99 9 9 7 6666 9 7 1111 9 88 99 9 11111 9 3333333 7 9 999 1111 9 9 9 11111 9 99 1 44 9 66666 9 88 9999 1 55 1 8 99999 1 1 1 2 22 22 555 1 1 2 22 22 6 00 0 0 0 0 0 0 4
consensus : NNACTG-TTGGGAAAA---GA-AAG-GATA-------CATAT----TTTAAA-TTCAG---TT---AACAT-------TTTAATTATTT-AAC-AA-T-A-TCAACGGATGTTC-TCTTCAAGAAN-TGTTT---C-TGAAGTCCAA-AT-CT-A-TTGTAATCAAGGCTTTCC--TTGCG-T-AG-AAAGTACC-G--TCCG---G--T---------------TTTCC--C-AG--------TTC-------AGC--AT---AA--A-ACTTCTTCAAT--TTAGA--T--AGAACAC---AT---------CGA------T--CTCCNTT---AAAGTA-A--TTT-CTCC-A-TTTCC-T---C-AATA-----T--T---A---G-T--TTCTCCATA-TCTTTCCACTAAGTAGT-CTCCAA-A---A--GCATTGTAGCCACTTT-CACA---ACATTTT-GTTTGT-TT-CTAC-TA-TC-TT--T---AGAGTCGA-CA-AGCG-C-AGCGAT------ATC-CTCGTCGTT--TAATGA--C-T---ATCTC-GTAAATAC-----TC-G-TTT--CG-AGACGAC-A-TATTGT-TGT-AGTGGAA--CTCTCTAGTGT--T-GCTAACGCTG-AAG-ATAC-CTTCAACC-AAT------CAAATT-AC-AGG-A--A-AT-CAAAACTGG-CG----T-C-A----AA-G--CGT--GCGG-GAAAT-----TA-T-------T-CG-A---AC---GG-GGAAT-AG-T-----C-AAAAA--ACTATT-CT-C---C-GGGA-A--ATAG----TTTGTTTA-T--TCA-CGAACAGT-GTA-AA-T-A-GCTA-TTTT--A--TC---TC-CTGAACG-T-CA--TA--TA-GGAAA--C-A-TTTT-TACAG-AA-G-TATAATAA
Reference ( family-1142 ) : NNACTG-TTGGGAAAA---GA-AAG-GATA-------CATAT----TTTAAA-TTCAG---TT---AACAT-------TTTAATTATTT-AAC-AA-T-A-TCAACGGATGTTC-TCTTCAAGAAN-TGTTT---C-TGAAGTCCAA-AT-CT-A-TTGTAATCAAGGCTTTCC--TTGCG-T-AG-AAAGTACC-G--TCCG---G--T---------------TTTCC--C-AG--------TTC-------AGC--AT---AA--A-ACTTCTTCAAT--TTAGA--T--AGAACAC---AT---------CGA------T--CTCCNTT---AAAGTA-A--TTT-CTCC-A-TTTCC-T---C-AATA-----T--T---A---G-T--TTCTCCATA-TCTTTCCACTAAGTAGT-CTCCAA-A---A--GCATTGTAGCCACTTT-CACA---ACATTTT-GTTTGT-TT-CTAC-TA-TC-TT--T---AGAGTCGA-CA-AGCG-C-AGCGAT------ATC-CTCGTCGTT--TAATGA--C-T---ATCTC-GTAAATAC-----TC-G-TTT--CG-AGACGAC-A-TATTGT-TGT-AGTGGAA--CTCTCTAGTGT--T-GCTAACGCTG-AAG-ATAC-CTTCAACC-AAT------CAAATT-AC-AGG-A--A-AT-CAAAACTGG-CG----T-C-A----AA-G--CGT--GCGG-GAAAT-----TA-T-------T-CG-A---AC---GG-GGAAT-AG-T-----C-AAAAA--ACTATT-CT-C---C-GGGA-A--ATAG----TTTGTTTA-T--TCA-CGAACAGT-GTA-AA-T-A-GCTA-TTTT--A--TC---TC-CTGAACG-T-CA--TA--TA-GGAAA--C-A-TTTT-TACAG-AA-G-TATAATAA
gi|1 : CTGCTTGTGAAAA---GA-AAA-GATA-------CAGATCAGTTTTAAA-TTCAGGTTTT---AGAAT-------TTTAAATATTT-AAC-AA-T-A-TCACCGGATGTT--TCTTCA-GAAC-TGTTTTCTC-TGAAGTCAGAGATGCT-A-AT-TACTGGGGGCTTTTCCTTTGCG-TGAG-GAA-TACC-GCGTCAG---G--T---------------TTTCT--C-AG--------TTC-------AGC--ATTGGAT--ATACTTCTTCAGTGTTCAGA-------AACAC---ATGATATCGACCGAA-----T--CTCCGTTG--AAAGTA-A--TTTTCTCT-AGTTTCCGT---C-A-TA-----T--T---A---G-T--TT-TCCATAATCTTTCCA-----------------A---A--GCA---------CTTT-TACACAAACATTTT-GTTTGTGTTACTAC-TAGTC-TT--TTATAG-GTCGAGCACAGCG-CGAGCGATGAATATATC-CTAGCC--------TGC--CGT---AACTCCGTAAATAC-----CCCG-TTTTGCG-AGACGACCA-TATTGTCTGTCAGTGGAAGACTCTCTAGTGTAATAGCTAACGCTGGAAGTATAC-CTTCAACC-AATA-----CAAAGT-AA-AGG-A--A-AT-CAAAACTGG-CG----TGC-A----AA-G--CGT--GCGG-GAAAT-----TA-G-------TGCG-A---AC---GG-GGAAT-AG-T-----C-AAAAA--AATATT-CT-C---C-GGG--A--ATAG----TTTG-TTA-TTGTCA-CGAACTGT-GTA-AA-T-A-GCTA-TTTTTAA--TCCTTTCTCTGAACG-T-CA--TA--TT-GGAAA--C-A-TTTT-TACAGAAA-G-T-TAATAA
gi|10 : CTG-TTGGAAAAG---GA-TAA-GATC-------CATAT----TTTTAA-ATCAG---TT---AACAT-------TTTAATTATTTGAACAAA-A-A-TC-ACGGATGTTC-TCTTCAAG-AC-TGTTT---C-TGAAGTCCAA-AT-C-------TAATTAACGCTTT-C--TTACGTT-AG-AAAGTCCC-G--TCCG---G--T---------------TTT-C--C-AG--------TTC-------AGC--AT---AA--A-A-TTCTTCAAT--TTA-------CGAACACTCGAC---------CGA------T--CTCCATTTGGAAAGTA-A--TTT-CTCT-A-TT--C-T---CAAATA-----T--T---A---G-TAGTTATCCATA-TC-TTCCACTAAATAGTCCTTCAA-A---A---------AGCCACTTT-TACA---ACATTTT-CTTTGT-TT-CTACGTA-TCTTT--T---AG-------CG-AGCG-A-AGCGAa
gi|11 : tcatCCAA-AT--A--GAATTGTAGCCACTTT-CCTA---ACTTTTT-GTTTGT-TT-CTAC-TA-TC-TT--T---AGAATCGA-CA-AACG-C-AGCGAT------ATC-CTCGTCGTT--TAAT------------CTC-GTAAATGC-----T--G-TTT--CG-AGACGTC-A-TGTTGTACAT-AGTGGAA--CTCTCTAGTGT--T-GCTAACGCTG-AAT-ATATACTTCAACT-ATT------CAAATT-AC-AGG-A--A-AT-C-AAACTGG-CG----T-C-A----AA-G--CGT--GCGG-GAAAT-----TA-T-------T-CG-A---AC---GG-GGAAT-AG-T-----A-AAAAA--ACTATT-CT-C---T-GGGA-A--ATAgact
gi|12 : TTTC-GTAAATAC-----C------T--CG-AGACGAC-A-T-TTGT-TGT-AGTGGGA--ACCTCTAGTGT--T-ACTAACGATG-AAG-ATAC-CTTCAACC-AAT-------AAATT-AC-AGG----A-AT-C-AAACTGG-CGT---T-C-ATCTGAA-GC-CAT--GCAG-GAAAT-----TA-T-------T-CG-----AC------GGAAT-AGAT-----CAAAAAA--ACTATT-CT-----C-GGGG-A--ATAG----TTTGTTTATT--TCA-CGAAT-GTAGTA-AA-T---GCTATTTTT--A--TC---TC-CTGAACG-T-CA--TATTTT-GGAAA--C-ATTTTT-TACAG-AA-G-TATAATAt
gi|13 : c-----TT-G-TTT--TC-AGACGAC-A-TATAAT-TGC-AGTGGAA--CTCCCCAGTGT--T-GCTAAAGCTG-AAA-ATAA-CTTCAACC-AAT------CAAATT-AC-AGG-A--A-AT-CAAAACTGG-TG----T-C-A----AA-A--CGT--GCAG-GGAAT-----TA-T-------T-CG-A---AC---GG-GGAA--AG-T-----C--AAAA--ATTATA-TT-C---T-AGGA-A--ATAG----TTTGTTTA-T--TCA-CAAAGAGTAATA-AT-T-A-GCTC-TATT--A--TC---TC-CTGAACG-T-CA--TA--TA-GGAAA--CTT-TTTT-TACAG-AA-G-TGTAATAA
gi|14 : aAACGCT--AAG-ATAC-CTTCAACCCAACTGGTTGCAAAGT-AC-AGG-ACAG-AT-CACAACTGGGCAGAATT-CGA----AA-G--CATTGGCGGAGGAAT-----GA-CGCGACCCT-CG-AGGGAC---GG-AGAAT-AG-T-----C-ATAAA--ACTATTTCT-C---TTGGGA-A--ATAG----TTTGTTTA-T--TCA-CGAA-AGT-G-A-AA-A-A-GCTA-TTTT--ACTTCT--TC-CTGAACG-TCCA--TA--TA-GAAAA--
gi|15 : tattgaccggtcagagattttctcatactg--TTGCG-T-AG-ATAATACG-G--TCCG---A--T---------------TTTCC--A-AG--------TTC-------AGA--AT---ACTTG-TCTTCTTTAAT--CTAGA--------ACAC---AT---------CGA------T--CTCCTTTT--AAAGTA-A--TCT-CTTA-A-TTTCC-T---C-AATA-----T------A---G-T--CTCTCCATA-TCTTTTCACTAAGTGGT-TTCCAA-A---AAAGCATTGTAGCCCTTTT-CACA---ACATTTT-GTTTAT-TT-CTAC-TA-TC-TT--C---AGAGTTGA-TA-AGCG-C-
gi|16 : CAACC-AAT------CAAGTT-AC-AGG-A--A-AT-CAAAACTAG-CG----T-C-A----AA-G--AGT--GCGG-GAAAT-----TA-T-------T-CG-A---AA---GG-GGAAT-AG-T-----A-AAAAA--A------------------A-AT-ATAG----TTTGTTTA-T--TCA-CGAACTGT-GTA-AA-T-A-GCTA-TTTT--A--TC---TC-CTGAACG-T-CA--TA--TA-GGAAA--C-A-TTTT-TACAG-A-----ATAATA
gi|17 : ACTG-TTGGGAAAA---GA-AAG--ATA-------CATAT----CTTAAA-TTCAA---TG---AACAT-------TCAAATTGTTT-AAC-AC-T-A-TCAACGGATGTTC-TCC------GT-TGTTT---C-TGAAGTTCAA-CTATT-A-TTGTAATCAAGATTTTCC--TTGCG-T-AG-AAAGCACC-G--TCCG---G--T---------------TT
gi|18 : tcaACTG-TTGGAAAAA---GA-------TA-------CATAT----TTTAAA-TTCAA---TT---AACATCTTAAATTTTAATTATTT-AAA-AA-T-A-TCAACGGATGTTC-TCTTCAAGAAA-TGTTT---C-TGAAATCCAA-AT-AGAA-TTGTAGCCA---CTTTC
gi|19 : tcaTAG----TATGTTTC-T--TTA-TGAACAGC-AAA-AACT-A-GCTC-TTTT--G--TC---TC-CTGAGCG-T-CA--AA--TA-GGAAA--T-A-TTTT-TACAG-AA-G-TGTAATAA
gi|2 : aagaaacatgcttccACTG-TTGGGAAAA---GA-AAGAGACATATATAACATAT----TTTAAA-TTCAA---TT---AAAAT-------TTTAATCATTT-AAC-AA-T-A-TCAACGGATGTTC-TCTTCAAGAAA-TGTTT---C-TGAAGTCCAA-AT-CTTA-TTGTAATCAAGGTTTTCT--TTGCG-T-AG-AAAGCACC-A--TCCA---G--A---------------ATTCC--C-AG--------TTC-------AGC--AT---AA--A-ACTTCTTTAAT--TTAAA--TGTAGAACAC---AT---------TGA------T--CTCCTAT---AAAGTA-A--TTT-CTCC-A-TTTCC-T---C-AATAAAGATC--T---A---G-T--TTTTT-----TCTTTACTCTAAATAGT-CTCCAA-AT--A--GCATTGTAGCCACTTC-CACA---ACTTTTT-GTTTGT-TT-CTAC-TA-TC-TT--T---AGAATTGA-CA-AATG-C-AGCGAT------ATC-CTTGTCGTT--TCATGAGCCAT---ATTTC-GTAAATACATGTACT-G-TTT--CA-AGACGAC-A-TATTGT-TGT-AGTGGAA--CTCTCTAGTGT--T-GCTAACGCTG-GAG-ATAC-CTTCAACG-AAT------CAAATT-AC-AGG-A--A-AT-CAAAACTTG-CG----T-C-A----AA-G--CAT--GCAG-GAAAT-----TA-T-------T-CG-A---AA---GG-GGAAT-AG-T-----C-AAAAA--ACTATT-CC-C---T-GGGA-A--ATAG----TTTGTTAA-T--TCA-CGAACAGT-GTA-AA-T-A-GCTA-TTTT--A--TC---TC-CTGAACG-T-CA--TA--TA-GGAAA--C-A-TTTT-TACAG-AA-G-TATAATAAatattg
gi|20 : ctAATT-ACCAGG-A--AGAT-CAAA-CTGGGCG----T-C-A----AAAG--CGT--GCGG-GAAA------TA-T-------TACGAA---AC---GG-GGAATAAG-T-----A-AAAAT--ACTATT-CT-CT--T-GGGA-AATATAG----TTCGT
gi|21 : aggctACTG-TTGGGAAAAAAAGA-AAG-GATT-------CATGT----TTTAAA-TTCAA---TT---AACA
gi|3 : ttcaTGGGAAAA---GA-AAG--ATA-------CACAT----TTTAAAATTCAG---TT---AACAT-------TTTAATTATTTTAAC-A--T-A-TCA-CGGATGTTC-TCTTCAAGAAC-TGCTT---C-CCAAGTC-AA-AC---------TAATTAACGCTTTCC--TTGCG-T-AG-AACGTACCCG--TCCG---G--T---------------TTTCCACC-AG--------TTTTTCA---AGC--AT---AA--A-ACTTTTTCAAT--TTAGACTT--A---CAC---AT---------CGACCGAGAT--CTCCATTG--AAAGTG-A--TTT-CTCTTA-TTTCC-T---CCAGTA-----T--T---ATAGG-T--TTTTTCCTA-TCTTTC-ACTAAATAGT-CTCCAA-A---A---------AGCCACTTTACA-A---ACATTTT-GTTTGT-T--CTAA-TA-TC-TT--T---ATA-TCGA-CA-AGCGGC-AACGAT------ATCTCTCGTAGCTCGTAA--A--C-T----TCT-----ATTAC-----T--G-TTT---G-AGACGAC-AATATTGT-TGT-AGTGGAA--CTCT-TAGTGT--T-ACTAACGCTG-AAG-ATAC-CTTCA-CC-AAT------CAAATTTAC-AGT-A--A-ATTCAAAACTGG-CGG---T-C-A----AA-GTCCGT--GCGG--AAAT-----TA-T-------T-CG-AT--AC----G-GGAAT-AG-T-----C-AAAAA--ACTATT--T-C---C-GGGG-A--ATAGT---TTTGTTTA-TTCTCA-CGAACAGT-GTA-AA-TAA-GCTA-TTTT--A--TC---TC-CTGAACG-TCCA--TA--TACGGAAA--A-A-TTTT-TACAG-AA-G-TATAA
gi|4 : cggTG-TTGGGAAAA---AAGAAG-AATA-------C-TAT----TTTAAA-TTCAG---CTTAAAACAT-------TTTA-TTATTT-AAC-AA-CCA-TCAACGGATGATC-TCTTCAAGAAACTGTTT---C-TGAAGTCCAA-AT-C-------TAAT-AACGCTTTCC--TTTCG-T-AGAAAAGTACC-G--TTCG---GTTT---------------TTTCC--C-AG--------TTC-------AGCATAT---AA--A-ACTTCTTCAAT--TTAGA-------AACAC---ATCGAC-----CGA------T--CTCCATTGA-AAAGTA-AATTTC-CTCT-A--TTCC-T---CAAATA-----T--TATAA---GTT--TTTTCCA-----TTTCCACTAAATAGTCCTCCAA-A---A---------AGCCACTTT-TACA---ACATTTTGGTTTGT-TT-CTAC-TA--------A---ATACTCGA-C--AGCA-C-AGCGAT------ATC-C-------------------------TCTC-GTAAATAC------C-G-TTT--CG-AGAC-AC-ATTAGTGT-TGT-AGTGGAA--CTCTCTAGTGT--T-ACTAACGCTG-AAG-ATAC-CTTCAACC-AAT------CAAATT-AC-AGGAA--A-AT-CAAAACTGG-CGC---T-CAA----AA-G--AGT--GCGG-GAAAT-----TATT-------T-CG-A---AC---GGTGGAAT-AG-T-----C-AAAAA--ACTATT-CT-C---C-GGGGCA--ATAG----TTTGTTTA-T--TCACCGAACTGT-GT--AA-T-A-GCTATTTTT--A--TCT--TC-TTGAACGCT-CACCTA--TA-GGAAA--C-A-TTTTGTACAG-AAGG-TATAATAata
gi|5 : catctTTT-AAC-AAGT-AATCAACTGATGTCCCTCTTCAAAGAA-TGTTT---CATGGAGTCCGA-TC-TT-T-TTGTA-TCAAGGTTTTCA--TTGCG-T-AG-AAAGCACC-A--TCC----G--T---------------TTTCC--CAAG--------TCC-------AGC--AT---AA--A-AA--CTTTAAT--T---A--T--AGAAC------T---------CGA------T--CCCCGTA---AAAGTA-AT-TTT-CTCC-A-TGTCT-T---C--ATA--------T---A---G-T--TTCTTCATA-TCTTTACATGAAGT--C-CTCCAATA---AT-ACATTATAG-CACTTT-CACA--------CT-AGTTGT-TT-CTAC-TA-TC-TT--T---AGAATCGA-CA-GCTG-C-A-CAAT------ATC-CCCGTCG----TAATGAC-C-C---ATCTC-GTAAATAC-----TT-GTTTT--CGAAGACGAC---TACTA--TGT-AGTG------------------T-GCT-ACGCTG-AAG-ATAC-CATC-ACC--AT------CAAATT-AC-AGG-A--A-AT-CAAACGTGG-CG----C----------------------G-GAGAT-----TA-T-------T-TG-A---ACAAAAA-GAAAT-AG-TTTCCCC-AAAAAACACTATT-CG-C---T--GGA-A--ATAA----TTTGTTTA----TCA-CGAACTGT-TAA-AA-T-A-GCTA--ATT--A--TC---TC-TTGAACG-T-CA--TA--TA-GGAAAACC-A--TTT-TA-AG-AA-ATTATAA
gi|6 : at--TTGCG-T-AG-AAAATATG-G--TCCGATTG--T---------------TTTCC--C-AGTTCATGGTTTCTCAGTTGAGC--AT---AA--A-CCTTCTTTA----TTA----T--AGAAAAC---AT---------CGA------TTGCTC--------AAATATC--TTT-GTCC-A-TTTTT-TTTTC-AATA-----T------A---A-T--TTCACCATA-TCTTTTCACTAAGTAGT-TTCAGA-A---A--ACGTTATAGCCATTTT-TACA---ACATTTC-GTTT-T-TT-CTAC-TA-TC-TT--T---AGAGTCGA-CA-AGCG-C-AGCGAT------ATT-TTCGTCATT--TAACGA--C-TCGTATCTC-ATATATAG-----T--G-TTC--TG-ACACGAC-A-TATTGT-TGT-AGTGGAA--CTGCC-AGTGT--T-GCTGATGCTG-AAG-ATAC-CTTCAACC-AAT------CAAATT-AC-TGG-A--A-AT-CAAATCTAA-CG----T-C-A----AA-T--CGT--GAGG-GAAAT-----TA-T-------T-CT-A---AC---GG-GGAAT-AG-T-----C-AAACA--TATAGT-TTACTAAC-GGGG-A--ATAG----Ta
gi|6 : tctgattgtaaA-T--TCA-CGAACAGT--TAGAA-T-A-CCTC-TTTT--A--TC---TA-CTGTACG-G-CA--TA--Tcaaacatataatttacacatctgagaaatatatttttttttaattcacgaacagttagaatacctcttttatctactgtacggcatat
gi|7 : tctgattgtaattgcgtagaaaatatggtccgattgttttcccagttcatggtttctcagttgagcataaaccttctttattatagaaaacatcgattgctcaaatatctttgtccatttttttttcaatataatttcaccatatcttttcactaagtagtttcagaaaacgttatagccatttttacaacatttcgttttttctactatctttagagtcgacaagcgcagcgatattttcgtcatttaacgactcgtatctcatatatagtgttctgacacgacatattgttgtagtggaactgccagtgttgctgatgctgaagataccttcaaccaatcaaattactggaaatcaaatctaacgtcaaatcgtgagggaaattattctaacggggaatagtcaaacatatagtttactaacggggaatagtcaaacatataatttacacatctgagaaatatatttttttttaA-AT-CT-AATTTTAATCAAGGATATAT--TTGCG-T-AG-AAAATACG-G--CCCG---A--T---------------CTTCC--C-AG--------TTC-------AGC--AT---AA--A-ACTTGTTTAAT--TTGGA--------ACAA---AT---------CGA------T--CTCCCTTC--AAAGTT-A--TTT-TTCC-A-TTACA-T---T-AATA-----T------A---G-T--TTCTCCATA-TTTTTC-ACTAAGTAGT-TACCAA-AT--A--TCATTATAGTCATTTT-CACA---ACTTCTT-GTTT-T-TT-CTGC-TA-TC-TT--T---AGAGTTGA-GA-AGCG-A-AGCGAT------ATC-TTCGT---T--TAATGA--C-T---A-----GTA--T-C-----TC-A-TT-------AACGAT-A-TATTGT-TGT-AGTGGAA--CTTCCCAGTAT--T-CCTAAAGCTG-AAA-ATAA-CTTCAGCC-AAT------CAAATT-AT-AAG-G--A-AT-CAAAATTGG-TG----T-C-G----AA-G--CGG--GCGG-AAAATTACAGTA-T-------T-CG-A---AC---CA-GGAAT-AG-T-----C-AAAAC--ACTATT-TT-C---T-AGTA-T--ATAA----TTTGTTTA-T--TCA-CCAACAG--GAA-AA-A-ACGC-A--TTT--A--TT---TC-CTGAATG-T-CA--TA--TA-AGAAA--C-A-ATTT-TATAG-AA-G-TGTAATAA
gi|8 : c-A-TTGCAATCGAGGCTATCT--TTGCG-T-AG-AAAATACG-G--TCTG---A--TATTCCCAGTTCAGGGTTTCT--C-AG--------TTC-------AGC--AT---AA--A-ACGTCTTTA----TTA----T--AGAAAAC---AT---------CGA------T--TTCCCTT---CAAATT-A--TTT-GTCC-A-ATTCC-T---C-AATA-----T--G---A-----T--CTCTCAATA-TCTTTTCACTATGCAGT-TTCCAA-AGAAA--ACATTATAGCCATTTT-CACA---AC-TTTT-GGTTGT-TT-TAAC-TA-TC-TT--C---AGAGTTAG-GA-AACA-C-AGCGAT------AGC-TTCATCATT--TAATGA--C-TCTTATCTT-ATAAACAC-----T--G-TTT--TA-AGACGAC-A-TATTGT-TGT-AGTGGAA--CTGCC-AGTGT--T-GCTGATGCTG-AAG-ATAC-CTTCAACC-AAT------CAAATT-AG-TAG-A--A-AT-CAAAACCCA-TC----T-C-A----AA-G--CGT--GTGG-GGGTT-----TA-T-------T-CG-A---AC---GG-GGAAT-AC-T-----C-AAAAA----TATT-AT-C---T-GAGA-A--ATAGGTTTTTTTTTTA-T--CCA-CGAACAGT--TAGAA-T-A-CCTC-TTTT--A--TC---TA-TTGTACG-T-CA--TA--Ta
gi|9 : gCTG-TTGGGGGAA---AA-AAA-GATA-------CATAT----TATAAA-TTCAG---TT---AACAT-------TTTAATTATTT-AAC-AA-T-A-TCAACGGATGTTC-TCTTCAAGAAC-TGTTT---C-TGAAGTCCAA-AT-C-------TAATTAACGCTTTCC--TTGCG-T-AG-AAAGTACC-G--TCCG---G--T---------------TTTCC--C-AT--------TTC-------AGC--AT---AA--A-ACTTCTTCAAT--TTAAA--T--AGAA-GC-------------------------------------------A--TTT-CTCT-A-CTTCC-T---C-AATA-----TTAT---A---G-T--TTTTCCATA-TCTTTCCACTAAATAGT-CTCCAA-A---A---------AGCCACTTT-TACA---ACATTTT-GTTTGT-TT-CTAC-TA-TC-TTTAT---ATAGTCGA-CA-AGCG-C-AGCAAT------ATC-CTC-TCG----TAA-------------CTC-GTAAATATA----CC-G-TTT--CG-AGACTAC-A-TATTGT-TGT-AGTGGAA--CTCTCTAGTGT--T-ACTAACGCTG-AGG-ATAC-CTTCAACC-AAT------CAAATT-AC-AG
blockSeqs : . AAA G AG TATATAA . A . TAA CTTAAAT G A G C A C AC . A . ATTATTG T C . T . A C . ATT TT ATTCCCAGTTCAGGG AC A TTCATGGT TCAGTTG AT . TT . A . AATGTAGAACACAT CCGAGA TG A TGG T AT . T . . TTT A AAGATCT TAG T AG A . C T GAAAACATTAT A . A G . . G . T TAT A . . G . . T GTTTCATGAGCCATAT . ATGTACT T CGA . A A . . T . . . . A C TGGTTG T C A CA G T G GAAT . G TCTG A TC TG A TACAG T GCGACCC A A GGG AAAA T A A TTCCC A AC TC A TAAC C AT GTTT T TC C A AGTA C A C T . CT T . C C CC TT C AC T T G . G T
blockSeqs : . . . G . . . . . . T . . . . . C . . . AGAATTG C G . . . . . . . . . . . . TTCA . . . . A . GAAACACATCGAC . . T GA . T . . . . . C TTATA . . . C . C . AAAGCATTGT . . T . . . . . . T G . . . . . . ATTTAACGACTCGTAT . ACC . CG . T . . . T . . . . . . . . . . . . . G T . A . . C . . . . . . . T G . . . . . . C . TT . T T . . . A AATA . . . T . . T . . C . . . . . . . . . .
blockSeqs : . . . G . . . . . . . . . . . . T . . . CTTATTG C G . . . . . . . . . . . . . . . . . A . CGAACACTCGAC . . T T . . . . . . . A TTAT . . . T . . . TAGAATTGT . . A . . . . . . T A . . . . . . ATTTAATGACTCTTAT . TT . CG . . . . . C . . . . . . . . . . . . . . G . . . . . . . . . . . . . G . . . . . . C . TT . . . . . . T GTA . . . . . . . . . . . . . . . . . . . .
blockSeqs : . . . A . . . . . . . . . . . . A . . . CTAATTT C C . . . . . . . . . . . . . . . . . A . GACTTACACAT . . A G . . . . . . . . TT . . . T . . . TAGCATTGT . . T . . . . . . C C . . . . . . GCTCGTAAACTT . TT . TC . . . . . T . . . . . . . . . . . . . . C . . . . . . . . . . . . . G . . . . . . T . T . . . . . . A AAA . . . . . . . . . . . . . . . . . . . .
blockSeqs : . . . G . . . . . . . . . . . . A . . . TTTTTG T C . . . . . . . . . . . . . . . . . A . TAGAAAACAT . . A C . . . . . . . . TT . . . T . . . ATACATTAT . . A . . . . . . T A . . . . . . GTAATGACCCAT . TC . CA . . . . . T . . . . . . . . . . . . . . . . . . . . . . . . . . . . G . . . . . . C . C . . . . . . A GTA . . . . . . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . . . . . . C . . . C C G . . . . . . . . . . . . . . . . . A . TAGAAAACAT . . G . . . . . . . . . TG . . . C . . . TATCATTAT . . A . . . . . . T G . . . . . . TTAATGACTA . T . CG . . . . . T . . . . . . . . . . . . . . . . . . . . . . . . . . . . G . . . . . . C . T . . . . . . A GTA . . . . . . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . . . . . . A . . . C C G . . . . . . . . . . . . . . . . . A . AATAGAAGC . . C . . . . . . . . . T . . . C . . . AACGTTAT . . A . . . . . . A G . . . . . . GTTTAAT . C . TG . . . . . C . . . . . . . . . . . . . . . . . . . . . . . . . . . . G . . . . . . C . T . . . . . . T TAA . . . . . . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . . . . C . . . C C G . . . . . . . . . . . . . . . . . A . GAACACAT . . C . . . . . . . . . T . . . C . . . A . . T . . . . . . T G . . . . . . GTAA . T . TA . . . . . T . . . . . . . . . . . . . . . . . . . . . . . . . . . . G . . . . . . C . C . . . . . . T TAG . . . . . . . . . . . . . . . . . . . .
blockSeqs : . . T C . . . . . . . . . . . . . . . . . . . ATAGAACT . . . . . . . . . . . . T . . . C . . . A . . A . . . . . . T G . . . . . . T . C . CG . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . G . . . . . . T . C . . . . . . A GAA . . . . . . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . . . . . . . . . . . GAACAAAT . . . . . . . . . . . . T . . . T . . . A . . . . . . . . . T . . . . . . T . G . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . C . . . . . . T . T . . . . . . A TAG . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . A . . . . . . . . . C . . . . . T . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . G . . . . . . A . T . . . . . . A GA . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . T . . . . . . . GT . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
blockSeqs : . .
blockSeqCons : **** *** *** CTATTG*** ** ** *** ** GAACACAT******************** ****** *** T*********** AACATTGT***** *** T***** ****** GTTTAATGACTCAT******* T******* CG*** ** ** ****** ** ** ***
originalCons : NNACTG-TTGGGAAAA---GA-AAG-GATA-------CATAT----TTTAAA-TTCAG---TT---AACAT-------TTTAATTATTT-AAC-AA-T-A-TCAACGGATGTTC-TCTTCAAGAAN-TGTTT---C-TGAAGTCCAA-AT-CT-A-TTGTAATCAAGGCTTTCC--TTGCG-T-AG-AAAGTACC-G--TCCG---G--T---------------TTTCC--C-AG--------TTC-------AGC--AT---AA--A-ACTTCTTCAAT--TTAGA--T--AGAACAC---AT---------CGA------T--CTCCNTT---AAAGTA-A--TTT-CTCC-A-TTTCC-T---C-AATA-----T--T---A---G-T--TTCTCCATA-TCTTTCCACTAAGTAGT-CTCCAA-A---A--GCATTGTAGCCACTTT-CACA---ACATTTT-GTTTGT-TT-CTAC-TA-TC-TT--T---AGAGTCGA-CA-AGCG-C-AGCGAT------ATC-CTCGTCGTT--TAATGA--C-T---ATCTC-GTAAATAC-----TC-G-TTT--CG-AGACGAC-A-TATTGT-TGT-AGTGGAA--CTCTCTAGTGT--T-GCTAACGCTG-AAG-ATAC-CTTCAACC-AAT------CAAATT-AC-AGG-A--A-AT-CAAAACTGG-CG----T-C-A----AA-G--CGT--GCGG-GAAAT-----TA-T-------T-CG-A---AC---GG-GGAAT-AG-T-----C-AAAAA--ACTATT-CT-C---C-GGGA-A--ATAG----TTTGTTTA-T--TCA-CGAACAGT-GTA-AA-T-A-GCTA-TTTT--A--TC---TC-CTGAACG-T-CA--TA--TA-GGAAA--C-A-TTTT-TACAG-AA-G-TATAATAA
finalCons : NNACTG-TTGGGAAAA---GA-AAG-GATA-------CATAT----TTTAAA-TTCAG---TT---AACAT-------TTTAATTATTT-AAC-AA-T-A-TCAACGGATGTTC-TCTTCAAGAAN-TGTTT---C-TGAAGTCCAA-ATCTATTG---TAATCAAGGCTTTCC--TTGCG-T-AG-AAAGTACC-G--TCCG---G--T---------------TTTCC--C-AG--------TTC-------AGC--AT---AA--A-ACTTCTTCAAT--TTAGAACACAT--------------------CGA------T--CTCCNTT---AAAGTA-A--TTT-CTCC-A-TTTCC-T---C-AATAT-----------A---G-T--TTCTCCATA-TCTTTCCACTAAGTAGT-CTCCAA-AAACATTGT-----AGCCACTTT-CACA---ACATTTT-GTTTGT-TT-CTAC-TA-TC-TTT-----AGAGTCGA-CA-AGCG-C-AGCGAT------ATC-CTCGTCGTTTAATGACTCAT-------CTC-GTAAATACT-------G-TTTCG---AGACGAC-A-TATTGT-TGT-AGTGGAA--CTCTCTAGTGT--T-GCTAACGCTG-AAG-ATAC-CTTCAACC-AAT------CAAATT-AC-AGG-A--A-AT-CAAAACTGG-CG----T-C-A----AA-G--CGT--GCGG-GAAAT-----TA-T-------T-CG-A---AC---GG-GGAAT-AG-T-----C-AAAAA--ACTATT-CT-C---C-GGGA-A--ATAG----TTTGTTTA-T--TCA-CGAACAGT-GTA-AA-T-A-GCTA-TTTT--A--TC---TC-CTGAACG-T-CA--TA--TA-GGAAA--C-A-TTTT-TACAG-AA-G-TATAATAA
Alignments
lowQualScore : 1111111 1111111 333333333 222222222222222 11111111 1111111 111111 2222222222222222 222 111111111111 11 44444444444444 111111 33333333333333 111111111111 111111 1111 11111 111
lowQualScore : 5 777 4 888 4444444 9999 4 777 777 6666666 4 4 4 4 4 4 1 4 0 55 777 4 4 000000000 1 1 44 3 3 3 3 44 555 000000000000000 55 55 3 33333333 9999999 666 55555 3 5555 444444 3 666 3 666 6666666666666666 3 55 3 555 9999 3 3 3 3 666 444 666666666666 666 00 55 2 3 4 7 3 22222222222222 0 3 555 3 3 3 3 3 3 3 555 666 3 3 3 3 111111 4 333 99999 66666666666666 777777777777 3 55555 6 3 6 3 44 3 44 3 3 3 3 2 111111 2 2 2 33 2 2 5 2 1111 2 5 6666 2 66 33 2 77777 2 9999999 5 2 777 5555 2 2 2 77777 2 33 0 33 2 11111 2 66 8888 3 88 3 2 99999 3 3 3 6 44 44 111 3 3 6 44 44 3 55 4 4 4 4 4 4 0
lowQualScore : . ... . ... ....... .... . ... ... ....... . . . . . . . . . .. ... . . ......... . . .. . . . . .. ... ............... .. .. . ........ ....... ... ..... . .... ...... . ... . ... ................ . .. . ... .... . . . . ... ... ............ ... .. .. . . . . . .............. . . ... . . . . . . . ... ... . . . . ...... . ... ..... .............. ............ . ..... . . . . .. . .. . . . . . ...... . . . .. . . . . .... . . .... . .. .. . ..... . ....... . . ... .... . . . ..... . .. . .. . ..... . .. .... . .. . . ..... . . . . .. .. ... . . . .. .. . .. . . . . . . .
lowQualScore : 0 888 4 222 4444444 4444 4 888 888 2222222 4 4 4 4 4 4 9 4 8 44 888 4 0 333333333 2 4 66 3 3 3 3 66 888 888888888888888 00 00 6 22222222 5555555 444 55555 6 7777 111111 6 444 6 444 5555555555555555 6 00 5 999 9999 6 6 6 6 444 999 000000000000 444 00 00 6 6 9 3 3 22222222222222 8 3 888 6 3 3 3 3 3 3 888 999 3 3 3 3 555555 0 000 11111 88888888888888 777777777777 3 00000 7 3 7 3 66 7 66 3 1 1 1 9 111111 7 7 9 99 9 9 7 9 8888 9 7 1111 9 88 99 9 11111 9 3333333 7 9 999 1111 9 9 9 11111 9 99 1 44 9 66666 9 88 9999 1 55 1 8 99999 1 1 1 2 22 22 555 1 1 2 22 22 6 00 0 0 0 0 0 0 4
consensus : NNACTG-TTGGGAAAA---GA-AAG-GATA-------CATAT----TTT-AAATTCAG---TT---AACAT-------TTTAATTA-TTT-AAC-AA-T-A-TCAACGGATGTTC-TCTTCAAGAAN-TGTTT---C-TGAAGTCCAA-AT-CT-A-TTGTAATCAAGGCTTTCC--TTGCG-T-AGAAA-GTA-CCG--TCCG---GT---------------TTT--C--CC-AG--------TTC-------AGCAT---A--A--A-ACTTCTTCAAT--T-TA------G-A---A-CAC---AT---------C------GA-T--CTCCNTT---AAAGTA-A--TTT-CTC-CA-TTTCC-T---C-A-A----TA------T---AG--T--TTCTCCATA-TCTTTCCACTAAGTAGT-CTCCAA-A---A-A--CATTGTAGCCACTTTCAC-A---ACATTTT-GTTTGT-TT-CTAC-TA-TC-TTT---AGA--GTCGA-CA-AGC-GC-AGCGAT------ATC-CTCGTCGTT--TAATGACT--C--AT--CTCGTAAATA--C------C--G-TTT--CG-AGACGAC-A-TATTGT-TGT-AGTGGAA--CTCTCTAGTGT--T-GCTAACGCTG-AAG-ATAC-CTTCAACC-AAT------CAAA-TTAC-AGG-A--A-A-TCAAAACTGG-C-G----T-C-A----AA-G--CGT--GCGG-GAAAT-----TA-T-------T-CG-A---AC---GG-GGAAT-AG-T-----C-AAAAA--ACTATT-CT-C---C-GGGA-A--ATAG----TTTGTTTA-T--TCA-CGAACAGT-GTA-AA-T-A-GCTA-TTTT--A--TC---TC-CTGAACG-T-CA--TA--TA-GGAAA--C-A-TTTT-TACAG-AA-G-TATAATAA
Reference ( family-1142 ) : NNACTG-TTGGGAAAA---GA-AAG-GATA-------CATAT----TTT-AAATTCAG---TT---AACAT-------TTTAATTA-TTT-AAC-AA-T-A-TCAACGGATGTTC-TCTTCAAGAAN-TGTTT---C-TGAAGTCCAA-AT-CT-A-TTGTAATCAAGGCTTTCC--TTGCG-T-AGAAA-GTA-CCG--TCCG---GT---------------TTT--C--CC-AG--------TTC-------AGCAT---A--A--A-ACTTCTTCAAT--T-TA------G-A---A-CAC---AT---------C------GA-T--CTCCNTT---AAAGTA-A--TTT-CTC-CA-TTTCC-T---C-A-A----TA------T---AG--T--TTCTCCATA-TCTTTCCACTAAGTAGT-CTCCAA-A---A-A--CATTGTAGCCACTTTCAC-A---ACATTTT-GTTTGT-TT-CTAC-TA-TC-TTT---AGA--GTCGA-CA-AGC-GC-AGCGAT------ATC-CTCGTCGTT--TAATGACT--C--AT--CTCGTAAATA--C------T--G-TTT--CG-AGACGAC-A-TATTGT-TGT-AGTGGAA--CTCTCTAGTGT--T-GCTAACGCTG-AAG-ATAC-CTTCAACC-AAT------CAAA-TTAC-AGG-A--A-A-TCAAAACTGG-C-G----T-C-A----AA-G--CGT--GCGG-GAAAT-----TA-T-------T-CG-A---AC---GG-GGAAT-AG-T-----C-AAAAA--ACTATT-CT-C---C-GGGA-A--ATAG----TTTGTTTA-T--TCA-CGAACAGT-GTA-AA-T-A-GCTA-TTTT--A--TC---TC-CTGAACG-T-CA--TA--TA-GGAAA--C-A-TTTT-TACAG-AA-G-TATAATAA
gi|1 : CTGCTTGTGAAAA---GA-AAA-GATA-------CAGATCAGTTTT-AAATTCAGGTTTT---AGAAT-------TTTAAATA-TTT-AAC-AA-T-A-TCACCGGATGTT--TCTTCA-GAAC-TGTTTTCTC-TGAAGTCAGAGATGCT-A-AT-TACTGGGGGCTTTTCCTTTGCG-TGAGGAA--TA-CCGCGTCAG---GT---------------TTT--C--TC-AG--------TTC-------AGCATTGGA--T--ATACTTCTTCAGTGTT-CA------G-A---AACAC---ATGATATCGACC------GAAT--CTCCGTTG--AAAGTA-A--TTTTCTC-TAGTTTCCGT---C-ATA----T-------T---AG--T--TT-TCCATAATCTTTCCA--AAG------------------------------CACTTTTAC-ACAAACATTTT-GTTTGTGTTACTAC-TAGTC-TTTTATAG---GTCGAGCACAGC-GCGAGCGATGAATATATC-CTAGCC-TG--CCGTAACT--C--------CGTAAATA--C------CCCG-TTTTGCG-AGACGACCA-TATTGTCTGTCAGTGGAAGACTCTCTAGTGTAATAGCTAACGCTGGAAGTATAC-CTTCAACC-AATA-----CAAA-GTAA-AGG-A--A-A-TCAAAACTGG-C-G----TGC-A----AA-G--CGT--GCGG-GAAAT-----TA-G-------TGCG-A---AC---GG-GGAAT-AG-T-----C-AAAAA--AATATT-CT-C---C-GGG--A--ATAG----TTTG-TTA-TTGTCA-CGAACTGT-GTA-AA-T-A-GCTA-TTTTTAA--TCCTTTCTCTGAACG-T-CA--TA--TT-GGAAA--C-A-TTTT-TACAGAAA-G-T-TAATAA
gi|10 : CTG-TTGGAAAAG---GA-TAA-GATC-------CATAT----TTT-TAAATCAG---TT---AACAT-------TTTAATTA-TTTGAACAAA-A-A-TC-ACGGATGTTC-TCTTCAAG-AC-TGTTT---C-TGAAGTCCAA-AT-C-------TAATTAACGCTTT-C--TTACGTT-AGAAA-GTC-CCG--TCCG---GT---------------TTT-----CC-AG--------TTC-------AGCAT---A--A--A-A-TTCTTCAAT--T-TAC-----G-A---A-CACTCGAC---------C------GA-T--CTCCATTTGGAAAGTA-A--TTT-CTC-TA-TT--C-T---CAA-A----TAT-----T---AG--TAGTTATCCATA-TC-TTCCACTAAATAGTCCTTCAA-A---A----------AGCCACTTTTAC-A---ACATTTT-CTTTGT-TT-CTACGTA-TCTTTT---AG---------CG-AGC-GA-AGCGAa
gi|11 : tcatCCAA-AT--A-G--AATTGTAGCCACTTTCCT-A---ACTTTTT-GTTTGT-TT-CTAC-TA-TC-TTT---AGA--ATCGA-CA-AAC-GC-AGCGAT------ATC-CTCGTCGTT--TAAT-------------CTCGTAAATG--C------T--G-TTT--CG-AGACGTC-A-TGTTGTACAT-AGTGGAA--CTCTCTAGTGT--T-GCTAACGCTG-AAT-ATATACTTCAACT-ATT------CAAA-TTAC-AGG-A--A-A-TC-AAACTGG-C-G----T-C-A----AA-G--CGT--GCGG-GAAAT-----TA-T-------T-CG-A---AC---GG-GGAAT-AG-T-----A-AAAAA--ACTATT-CT-C---T-GGGA-A--ATAgact
gi|12 : T--TTCGTAAATA--C------C------T--CG-AGACGAC-A-T-TTGT-TGT-AGTGGGA--ACCTCTAGTGT--T-ACTAACGATG-AAG-ATAC-CTTCAACC-AAT-------AAA-TTAC-AGG----A-A-TC-AAACTGG-C-GT---T-C-ATCTGAA-GC-CAT--GCAG-GAAAT-----TA-T-------T-CG-----AC------GGAAT-AGAT-----CAAAAAA--ACTATT-CT-----C-GGGG-A--ATAG----TTTGTTTATT--TCA-CGAAT-GTAGTA-AA-T---GCTATTTTT--A--TC---TC-CTGAACG-T-CA--TATTTT-GGAAA--C-ATTTTT-TACAG-AA-G-TATAATAt
gi|13 : cA--T------T--G-TTT--TC-AGACGAC-A-TATAAT-TGC-AGTGGAA--CTCCCCAGTGT--T-GCTAAAGCTG-AAA-ATAA-CTTCAACC-AAT------CAAA-TTAC-AGG-A--A-A-TCAAAACTGG-T-G----T-C-A----AA-A--CGT--GCAG-GGAAT-----TA-T-------T-CG-A---AC---GG-GGAA--AG-T-----C--AAAA--ATTATA-TT-C---T-AGGA-A--ATAG----TTTGTTTA-T--TCA-CAAAGAGTAATA-AT-T-A-GCTC-TATT--A--TC---TC-CTGAACG-T-CA--TA--TA-GGAAA--CTT-TTTT-TACAG-AA-G-TGTAATAA
gi|14 : AACGCT--AAG-ATAC-CTTCAACCCAACTGGTTGCAAA-GTAC-AGG-ACAG-A-TCACAACTGGGC-AGAATT-CGA----AA-G--CATTGGCGGAGGAAT-----GA-CGCGACCCT-CG-AGGGAC---GG-AGAAT-AG-T-----C-ATAAA--ACTATTTCT-C---TTGGGA-A--ATAG----TTTGTTTA-T--TCA-CGAA-AGT-G-A-AA-A-A-GCTA-TTTT--ACTTCT--TC-CTGAACG-TCCA--TA--TA-GAAAA--
gi|15 : tattgaccggtcagagattttctcatactg--TTGCG-T-AGATA-ATA-CGG--TCCG---AT---------------TTT--C--CA-AG--------TTC-------AGAAT---A--CTTG-TCTTCTTTAAT--C-TA------G-A---A-CAC---AT---------C------GA-T--CTCCTTTT--AAAGTA-A--TCT-CTT-AA-TTTCC-T---C-A-A----TA------T---AG--T--CTCTCCATA-TCTTTTCACTAAGTGGT-TTCCAA-A---A-AAGCATTGTAGCCCTTTTCAC-A---ACATTTT-GTTTAT-TT-CTAC-TA-TC-TTC---AGA--GTTGA-TA-AGC-GC-
gi|16 : CAACC-AAT------CAAG-TTAC-AGG-A--A-A-TCAAAACTAG-C-G----T-C-A----AA-G--AGT--GCGG-GAAAT-----TA-T-------T-CG-A---AA---GG-GGAAT-AG-T-----A-AAAAA--A------------------A-AT-ATAG----TTTGTTTA-T--TCA-CGAACTGT-GTA-AA-T-A-GCTA-TTTT--A--TC---TC-CTGAACG-T-CA--TA--TA-GGAAA--C-A-TTTT-TACAG-A-----ATAATA
gi|17 : ACTG-TTGGGAAAA---GA-AAG--ATA-------CATAT----CTT-AAATTCAA---TG---AACAT-------TCAAATTG-TTT-AAC-AC-T-A-TCAACGGATGTTC-TCC------GT-TGTTT---C-TGAAGTTCAA-CTATT-A-TTGTAATCAAGATTTTCC--TTGCG-T-AGAAA-GCA-CCG--TCCG---GT---------------TT
gi|18 : tcaACTG-TTGGAAAAA---GA-------TA-------CATAT----TTT-AAATTCAA---TT---AACATCTTAAATTTTAATTA-TTT-AAA-AA-T-A-TCAACGGATGTTC-TCTTCAAGAAA-TGTTT---C-TGAAATCCAA-AT-AGAA-TTGTAGCCA---CTTTC
gi|19 : tcaTAG----TATGTTTC-T--TTA-TGAACAGC-AAA-AACT-A-GCTC-TTTT--G--TC---TC-CTGAGCG-T-CA--AA--TA-GGAAA--T-A-TTTT-TACAG-AA-G-TGTAATAA
gi|2 : aagaaacatgcttccACTG-TTGGGAAAA---GA-AAGAGACATATATAACATAT----TTT-AAATTCAA---TT---AAAAT-------TTTAATCA-TTT-AAC-AA-T-A-TCAACGGATGTTC-TCTTCAAGAAA-TGTTT---C-TGAAGTCCAA-AT-CTTA-TTGTAATCAAGGTTTTCT--TTGCG-T-AGAAA-GCA-CCA--TCCA---GA---------------ATT--C--CC-AG--------TTC-------AGCAT---A--A--A-ACTTCTTTAAT--T-TAAATGTAG-A---A-CAC---AT---------T------GA-T--CTCCTAT---AAAGTA-A--TTT-CTC-CA-TTTCC-T---C-A-A----TAAAGATCT---AG--T--TTTTT-----TCTTTACTCTAAATAGT-CTCCAA-AT--A-G--CATTGTAGCCACTTCCAC-A---ACTTTTT-GTTTGT-TT-CTAC-TA-TC-TTT---AGA--ATTGA-CA-AAT-GC-AGCGAT------ATC-CTTGTCGTT--TCATGAGC--C--ATATTTCGTAAATA--CATGTACT--G-TTT--CA-AGACGAC-A-TATTGT-TGT-AGTGGAA--CTCTCTAGTGT--T-GCTAACGCTG-GAG-ATAC-CTTCAACG-AAT------CAAA-TTAC-AGG-A--A-A-TCAAAACTTG-C-G----T-C-A----AA-G--CAT--GCAG-GAAAT-----TA-T-------T-CG-A---AA---GG-GGAAT-AG-T-----C-AAAAA--ACTATT-CC-C---T-GGGA-A--ATAG----TTTGTTAA-T--TCA-CGAACAGT-GTA-AA-T-A-GCTA-TTTT--A--TC---TC-CTGAACG-T-CA--TA--TA-GGAAA--C-A-TTTT-TACAG-AA-G-TATAATAAatattg
gi|20 : ctAA-TTACCAGG-A--AGA-TCAAA-CTGGGC-G----T-C-A----AAAG--CGT--GCGG-GAAA------TA-T-------TACGAA---AC---GG-GGAATAAG-T-----A-AAAAT--ACTATT-CT-CT--T-GGGA-AATATAG----TTCGT
gi|21 : aggctACTG-TTGGGAAAAAAAGA-AAG-GATT-------CATGT----TTT-AAATTCAA---TT---AACA
gi|3 : ttcaTGGGAAAA---GA-AA--GATA-------CACAT----TTTAAAATTCAG---TT---AACAT-------TTTAATTATTTT-AAC--A-T-A-TC-ACGGATGTTC-TCTTCAAGAAC-TGCTT---C-CCAAGT-CAA-AC---------TAATTAACGCTTTCC--TTGCG-T-AGAAC-GTACCCG--TCCG---GT---------------TTT--CCACC-AG--------TTTTTCA---AGCAT---A--A--A-ACTTTTTCAAT--T-TA------G-ACTTA-CAC---AT---------CGACCGAGA-T--CTCCATTG--AAAGTG-A--TTT-CTCTTA-TTTCC-T---C-C-AGTATTA------T---AGGTT--TTTTCC-TA-TCTTT-CACTAAATAGT-CTCCAA-A---A----------AGCCACTTT-ACAA---ACATTTT-GTTTG--TT-CTAA-TA-TC-TTT---ATA---TCGA-CA-AGCGGC-AACGAT------ATCTCTCGTAGCTCGTAA--ACT------T--CT----ATTA--C------T--G-TTT---G-AGACGACAA-TATTGT-TGT-AGTGGAA--CTCT-TAGTGT--T-ACTAACGCTG-AAG-ATAC-CTTC-ACC-AAT------CAAATTTAC-AGT-A--A-ATTCAAAACTGG-CGG----T-C-A----AA-GTCCGT--GC-G-GAAAT-----TA-T-------T-CG-AT--AC----G-GGAAT-AG-T-----C-AAAAA--ACTATT--T-C---C-GGGG-A--ATAGT---TTTGTTTA-TTCTCA-CGAACAGT-GTA-AA-TAA-GCTA-TTTT--A--TC---TC-CTGAACG-TCCA--TA--TACGGAAA--A-A-TTTT-TACAG-AA-G-TATAA
gi|4 : cggTG-TTGGGAAAA---AAGAAG-AATA-------C-TAT----TTT-AAATTCAG---CTTAAAACAT-------TTTA-TTA-TTT-AAC-AA-CCA-TCAACGGATGATC-TCTTCAAGAAACTGTTT---C-TGAAGTCCAA-AT-CT-A------AT-AACGCTTTCC--TTTCG-T-AGAAAAGTA-CCG--TTCG---GT---------------TTTTTC--CC-AG--------TTC-------AGCAT---ATAA--A-ACTTCTTCAAT--T-TA------GAA---A-CAC---ATCGAC-----C------GA-T--CTCCATTGA-AAAGTA-AATTTC-CTC-TA--TTCC-T---C-A-AATATTA------T---AAGTT--TTTTCCA-----TTTCCACTAAATAGTCCTCCAA-A---A----------AGCCACTTTTAC-A---ACATTTTGGTTTGT-TT-CTAC-TA------A---ATA--CTCGA-C--AGC-AC-AGCGAT------ATC-C------------------------T--CTCGTAAATA--C------C--G-TTT--CG-AGAC-AC-ATTAGTGT-TGT-AGTGGAA--CTCTCTAGTGT--T-ACTAACGCTG-AAG-ATAC-CTTCAACC-AAT------CAAA-TTAC-AGGAA--A-A-TCAAAACTGG-C-GC---T-CAA----AA-G--AGT--GCGG-GAAAT-----TATT-------T-CG-A---AC---GGTGGAAT-AG-T-----C-AAAAA--ACTATT-CT-C---C-GGGGCA--ATAG----TTTGTTTA-T--TCACCGAACTGT-GT--AA-T-A-GCTATTTTT--A--TCT--TC-TTGAACGCT-CACCTA--TA-GGAAA--C-A-TTTTGTACAG-AAGG-TATAATAata
gi|5 : catct-TTT-AAC-AAGT-AATCAACTGATGTCCCTCTTCAAAGAA-TGTTT---CATGGAGTCCGA-TC-TT-T-TTGTA-TCAAGGTTTTCA--TTGCG-T-AGAAA-GCA-CCA--TCC----GT---------------TTT--C--CCAAG--------TCC-------AGCAT---A--A--A-AA--CTTTAAT--TATA------G-A---A-C------T---------C------GA-T--CCCCGTA---AAAGTA-AT-TTT-CTC-CA-TGTCT-T---C---A----TA------T---AG--T--TTCTTCATA-TCTTTACATGAAGT--C-CTCCAATA---ATA--CATTATAG-CACTTTCAC-A--------CT-AGTTGT-TT-CTAC-TA-TC-TTT---AGA--ATCGA-CA-GCT-GC-A-CAAT------ATC-CCCGTCG----TAATGACC--C--AT--CTCGTAAATA--CT-----T--GTTTT--CGAAGACGAC---TACTA--TGT-AGTG------------------T-GCT-ACGCTG-AAG-ATAC-CATC-ACC--AT------CAAA-TTAC-AGG-A--A-A-TCAAACGTGG-C-G----C----------------------G-GAGAT-----TA-T-------T-TG-A---ACAAAAA-GAAAT-AG-TTTCCCC-AAAAAACACTATT-CG-C---T--GGA-A--ATAA----TTTGTTTA----TCA-CGAACTGT-TAA-AA-T-A-GCTA--ATT--A--TC---TC-TTGAACG-T-CA--TA--TA-GGAAAACC-A--TTT-TA-AG-AA-ATTATAA
gi|6 : at--TTGCG-T-AGAAA-ATA-TGG--TCCGATTGT---------------TTT--C--CC-AGTTCATGGTTTCTCAGTTGAGCAT---A--A--A-CCTTCTTTATT--A-TA------G-A---A-AAC---AT---------C------GA-TTGCTC--------AAATATC--TTT-GTC-CA-TTTTT-TTTTC-A-A----TA------T---AA--T--TTCACCATA-TCTTTTCACTAAGTAGT-TTCAGA-A---A-A--CGTTATAGCCATTTTTAC-A---ACATTTC-GTTT-T-TT-CTAC-TA-TC-TTT---AGA--GTCGA-CA-AGC-GC-AGCGAT------ATT-TTCGTCATT--TAACGACT--CGTAT--CTCATATATA--G------T--G-TTC--TG-ACACGAC-A-TATTGT-TGT-AGTGGAA--CTGCC-AGTGT--T-GCTGATGCTG-AAG-ATAC-CTTCAACC-AAT------CAAA-TTAC-TGG-A--A-A-TCAAATCTAA-C-G----T-C-A----AA-T--CGT--GAGG-GAAAT-----TA-T-------T-CT-A---AC---GG-GGAAT-AG-T-----C-AAACA--TATAGT-TTACTAAC-GGGG-A--ATAG----Ta
gi|6 : tctgattgtaaA-T--TCA-CGAACAGT--TAGAA-T-A-CCTC-TTTT--A--TC---TA-CTGTACG-G-CA--TA--Tcaaacatataatttacacatctgagaaatatatttttttttaattcacgaacagttagaatacctcttttatctactgtacggcatat
gi|7 : tctgattgtaattgcgtagaaaatatggtccgattgttttcccagttcatggtttctcagttgagcataaaccttctttattatagaaaacatcgattgctcaaatatctttgtccatttttttttcaatataatttcaccatatcttttcactaagtagtttcagaaaacgttatagccatttttacaacatttcgttttttctactatctttagagtcgacaagcgcagcgatattttcgtcatttaacgactcgtatctcatatatagtgttctgacacgacatattgttgtagtggaactgccagtgttgctgatgctgaagataccttcaaccaatcaaattactggaaatcaaatctaacgtcaaatcgtgagggaaattattctaacggggaatagtcaaacatatagtttactaacggggaatagtcaaacatataatttacacatctgagaaatatatttttttttaA-AT-CT-AATTTTAATCAAGGATATAT--TTGCG-T-AGAAA-ATA-CGG--CCCG---AT---------------CTT--C--CC-AG--------TTC-------AGCAT---A--A--A-ACTTGTTTAAT--T-TG------G-A---A-CAA---AT---------C------GA-T--CTCCCTTC--AAAGTT-A--TTT-TTC-CA-TTACA-T---T-A-A----TA------T---AG--T--TTCTCCATA-T-TTTTCACTAAGTAGT-TACCAA-AT--A-T--CATTATAGTCATTTTCAC-A---ACTTCTT-GTTT-T-TT-CTGC-TA-TC-TTT---AGA--GTTGA-GA-AGC-GA-AGCGAT------ATC-T---TCGTT--TAATGACTAGT--AT--CTCAT---TA------------------------ACGAT-A-TATTGT-TGT-AGTGGAA--CTTCCCAGTAT--T-CCTAAAGCTG-AAA-ATAA-CTTCAGCC-AAT------CAAA-TTAT-AAG-G--A-A-TCAAAATTGG-T-G----T-C-G----AA-G--CGG--GCGG-AAAATTACAGTA-T-------T-CG-A---AC---CA-GGAAT-AG-T-----C-AAAAC--ACTATT-TT-C---T-AGTA-T--ATAA----TTTGTTTA-T--TCA-CCAACAG--GAA-AA-A-ACGC-A--TTT--A--TT---TC-CTGAATG-T-CA--TA--TA-AGAAA--C-A-ATTT-TATAG-AA-G-TGTAATAA
gi|8 : c-A-TTGCAATCGAGGCTATCT--TTGCG-T-AGAAA-ATA-CGG--TCTG---ATATTCCCAGTTCAGGGTTT--C--TC-AG--------TTC-------AGCAT---A--A--A-ACGTCTTTATT--A-TA------G-A---A-AAC---AT---------C------GA-T--TTCCCTT---CAAATT-A--TTT-GTC-CA-ATTCC-T---C-A-A----TA------T---GA--T--CTCTCAATA-TCTTTTCACTATGCAGT-TTCCAA-AGAAA-A--CATTATAGCCATTTTCAC-A---AC-TTTT-GGTTGT-TT-TAAC-TA-TC-TTC---AGA--GTTAG-GA-AAC-AC-AGCGAT------AGC-TTCATCATT--TAATGACT--CTTAT--CTTATAAACA--C------T--G-TTT--TA-AGACGAC-A-TATTGT-TGT-AGTGGAA--CTGCC-AGTGT--T-GCTGATGCTG-AAG-ATAC-CTTCAACC-AAT------CAAA-TTAG-TAG-A--A-A-TCAAAACCCA-T-C----T-C-A----AA-G--CGT--GTGG-GGGTT-----TA-T-------T-CG-A---AC---GG-GGAAT-AC-T-----C-AAAAA----TATT-AT-C---T-GAGA-A--ATAGGTTTTTTTTTTA-T--CCA-CGAACAGT--TAGAA-T-A-CCTC-TTTT--A--TC---TA-TTGTACG-T-CA--TA--Ta
gi|9 : gCTG-TTGGGGGAA---AA-AAA-GATA-------CATAT----TAT-AAATTCAG---TT---AACAT-------TTTAATTA-TTT-AAC-AA-T-A-TCAACGGATGTTC-TCTTCAAGAAC-TGTTT---C-TGAAGTCCAA-AT-CT-A------ATTAACGCTTTCC--TTGCG-T-AGAAA-GTA-CCG--TCCG---GT---------------TTT--C--CC-AT--------TTC-------AGCAT---A--A--A-ACTTCTTCAAT--T-TA--------A---A-TA--------------------------------------GAAGCA----TTT-CTC-TA-CTTCC-T---C-A-A----TA------TTATAG--T--TTTTCCATA-TCTTTCCACTAAATAGT-CTCCAA-A---A-A---------GCCACTTTTAC-A---ACATTTT-GTTTGT-TT-CTAC-TA-TC-TTT---ATATAGTCGA-CA-AGC-GC-AGCAAT------ATC-CTC-TCGT----AA--------------CTCGTAAATATAC------C--G-TTT--CG-AGACTAC-A-TATTGT-TGT-AGTGGAA--CTCTCTAGTGT--T-ACTAACGCTG-AGG-ATAC-CTTCAACC-AAT------CAAA-TTAC-AG