lowQualScore : 11111111111111111111111111111111111
lowQualScore : 2 22 44 11 1 1 11 2 555555555 4 11 111 1 1 2222222 6666666666666666666666666666666666 111 11111 7777777777777777777777777777777777777777777777777777777777 111111 111 1111111111 222222222 3333333333 111 11 333333333333 1111 1 2222222222 222222222 666666666666666666666666666666666666666666666666666 11 222 11 1 00000000000000000000000000000000000 11111 222 3333333333333333 1 11111 11 1 4444444 111 2 2222 2 11 333 1 1 1 333333333 33333 1 1
lowQualScore : 0 4 77 4 22 88 3 3 7 44 6 6 3 111111111 0 88 88 999 7 0 3 5 0 0 555 2222222 7777777777777777777777777777777777 6 000 5 5 1 6 77 2 11111 0000000000000000000000000000000000000000000000000000000000 666666 66 3 8888 111 7 0 5 66 2222222222 5 77 3 555555555 0 4444444444 3 0 5 1 000 1 99 22 111111111111 2 4444 2 2 3 3333333333 8 77 777777777 999999999999999999999999999999999999999999999999999 11 1 555 11 8 1 0 0 44 55555555555555555555555555555555555 33333 0 5 111 4444444444444444 8 0 8 8 99999 11 0 2222222 8 444 11 4 0 3 8888 3 66 666 3 6 3 3 7 777777777 7 6 8 99999 99 3 8 3
lowQualScore : . . .. . .. .. . . . .. . . . ......... . .. .. ... . . . . . . ... ....... .................................. . ... . . . . .. . ..... .......................................................... ...... .. . .... ... . . . .. .......... . .. . ......... . .......... . . . . ... . .. .. ............ . .... . . . .......... . .. ......... ................................................... .. . ... .. . . . . .. ................................... ..... . . ... ................ . . . . ..... .. . ....... . ... .. . . . .... . .. ... . . . . . ......... . . . ..... .. . . .
lowQualScore : 0 0 55 0 55 00 3 3 0 00 7 7 7 333333333 0 00 33 222 0 0 2 0 0 8 222 8888888 6666666666666666666666666666666666 9 000 7 7 7 6 99 3 11111 3333333333333333333333333333333333333333333333333333333333 444444 00 9 7777 444 9 3 1 99 7777777777 7 99 4 000000000 4 0000000000 7 7 7 1 000 9 00 00 777777777777 3 0000 1 3 7 2222222222 4 99 444444444 000000000000000000000000000000000000000000000000000 88 0 222 00 0 4 6 8 22 88888888888888888888888888888888888 00000 8 0 666 4444444444444444 0 6 0 0 66666 00 0 4444444 0 000 66 0 0 7 7777 7 33 777 3 7 3 3 3 333333333 3 7 3 00000 77 3 3 3
consensus : TGGCAANAGTGTGTCTAACNAAGTGTATNCAAGGTGGTAANTCAT-TTGGACTC-CAATCACTATTGTCAGT-ATTTTAATNAGAC---GN----AATTTGTCCGTTAA--GAGAANTAAGATTTA-TTTCAGTCCCAGTATACACGCAGACTCTTCACGTTGGG----ATGTAT----------TATA----------------T-T-GGTGCT---G-TATA-CACACTGCCTT--CCCGTTT-CG-TACTTGTATC-NCGTG----TNNA-------CGAGTAA--------------TCG--------ACAAGG------AGGTCTAAGTGGTCGCGAAGA-GTTGTTAAATCTTCAAATT----TTA---TCT-GC--GTNG--------NTGGGGATTATTTTTT-------NGGTNGATCA-TTGGC---AAANNTATCA-AAATTACTGGN-TCA-----AGAAA-TANTTCGAAGGTGGNTG-CNAT----AAAAGCA--GAATT--G-G-A--ATCTATTTTTG-AATATTTTCAAGTT-A-T-AGTTTTCGGTTTTAAAA-AATCTGGTT-TTTCGTTTCCTTCCTTGTATCTGCGTGA-TAGTGGTTGTACGATGTAATGA-T--CATGTT-------ATTATATCAC------GGAC--A--AAATTACCG--GTCCT------GT-TATTTGCT-TCATTGTCCA-TA-GAC-A-CGATGATAGA--GAACAA-CGCGT-A-TACTG---ACTTCTAATTCATNCAGCATNCATA-TTGTATTT-AAAGCACTGCCT---AC-CGGTGTTTTGTG-AAAT-TAACCAGACATA--CAA-TT-AACAAAGTGGGAGTTTCCGNNG-CCTTGCNTTTT-ATCCAAGTC-CAGTATG
Reference ( gi|3 ) : TGG-AATAGTGTGTCT--CTAAGTGTATG-AAGGTGGTAACTCAT-TTGGACTC-CAATAACTATTGTCAGT-ATTTTAATGAGAC---AG----AATTT-TCCGTTAA--GAGTTCTAAGATTTA-TTTCAGTCCCAGTATACACGCAGACTCTTCACGTTGGA----ATGTAT----------TATA----------------T-T-GGTGAT---G-TATA-CACACTCTCTT--CCTGTTT-CA-TACTTGTTTC-TCGTG----TTCA-------CGAGTAA--------------TCG--------ACAAGG------AGGTTTAAGTGATCGCAAAGG-GTTGTTCAATCTTCAAATT----TTA---TCT-GC--GTAG--------TTGGGGATTATTTTTT-------AGATTGATCA-TTGAC---AAAGATATCA-GAATTACTTGT-TCA-----AGAAA-TATTTTGAAAGTGGCTG-CCAT----TAAAGAA--GAATT--G-G-A--ATCTATTTTTG-AATGTTTTCAAGTTGA-T-AGTTTTTTGTTTTAAAA-AATCTGGTT-TTTTGTTTCCTTCCTTGC-TCTGCATGA-TAGTGGTTGTACGATGTAATT--T--CATGCT-------A------CAC------GGAC--A--AAATTCCCG--TTCCT------GT-T-TTTGCT-TCATTGTCCA-TA-GAC-A-CGATGATAGA--GAAGAA-C---T-A-TACTG---ACTTCTAATTCATACA-CATGCACA-TTGTATTTAAAAACACTGCCT---AC-CGGTGTTTTGTG-AAAT-TAACCAGACATA--TAA-T--AACAAAGGGGGTGTTTCCGGGA-TCTTGTCTTTT-ATCCAAGAC-CAGTATG
gi|7 : TGGCAATAGTGTGTCT--CTAAGTGTATGCAAGGTGGTAACTCAT-TTGGACTC-CAATAACTATTGTCAGTTATTTTAATGAGAC---AG----AATTTATCCGTTAA--GAGTTCTAAGATTTA-TTTCAGTCCCAGTATACACGCAGACTCTTCACGTTGGA----ATGTAT----------TATA----------------T-T-GGTGAT---G-TATA-CACACTCTCTT--CCTGTTT-CA-TACTTGTTTC-TCGTG----TTCA-------CGAGTAA--------------TCG--------ACAAGG------AGGTTTAAGTGATCGCAAAGG-GTTGTTCAATCTTCAAATT----TTA---TCT-GC--GTAG--------TTGGGGATTATTTTTT-------AGATTGATCA-TTGAC---AAAGATATCA-GAATTACTTGT-TCA-----AGAAA-TATTTTGAAAGTGGCTG-CCAT----AAAAGAA--GAATT--G-GAA--ATCTATTTT
gi|4 : TGG-AAAAATGTGTCTAACAAAATATATTTAAGATAATAAA-CACCTTCGACTCACAAGCA-TATTGACGGT-GATTTGTTTAAAC---GATATCAATTTGTCCA--AATGGAGAAACAAGACTTAATTTCAGTCCCACCATACACGCAGACT-TTCGAATTA-A----ATGCATGATGGTGCTGTATACAGGATTTCCGTCAAAT-T-GTTGGTACAG-TAAAATACACTGCCTT--CC-GTT---A-TCCTT---------TG----TTAA-------CG-TTAA---------------CG--------GCAAGG------AGATTTGAGTGGTCACGAAGA--TTGTAGAAGT----GATTGCTGTTC---TCT-GC--GTCG--------ATGAGAATTATTCTC--------AGGTGAATGA-CAGGC---AAACTTATCA--AATTACTA----CATAGGGAGAAA-T---TTGAA----GTTG---ATAGGATAAAACA--GAATT--TTG-A--ATTTATTTTAA-AAT-----CAA--------AATTTTCAGTTTAAAAATAATGTG-----TTCATTTC-TTCCTTGTATCTGCGTGAAGAGTGGTGATACGAT--AGTT--TTCCAAGCT-------A------TATTTATCTAGAC--A--AAATCACCG--GTCCT------GT------GCTCTCAATGTCCA-TA-GAC-A-TGATAATATA--AAATAA-A---C-A-TATTGTCTACTTTTga
gi|12 : T-TTGGATCC-CAATCAC-ATGAT-AGTGATTTTAATAAGACGATAC----AATTTGTCCATTAA--GAGAAGTAAGATTCA-TTTCAA--CCA-TATACACTCA-ACTCTTGCTGTTAGGTTATATATAT----------TATG----------------T---GGTGCT---G-TATA-CACATTCT--T--CCTGTTT-CA-TACTTGTATC-GTGTA----TAAA-------C-AGCAA--------------TCA--------ACAAGG------AGGTCTAAGTGGTCGTGAAGT-GTTCTTAAATCTTCAAATT----TTA---TCT-GC--GTAG--------CTGTGAATTATTTTTC-------TGGTTGATCA-TTGTC---AAATATATCA-GAATTACGGGA-TCA-----GAAAA-TAGTTTGAAt
gi|5 : cCTAAGATT-A-TATCAGTCCCCGTAGACACGCA-AC-CTTCATGTTCGG----GTGTAT----------T-TA----------------TAT-GGTGAT---GGTATA-CACATTTTCTTGCCCTGT---CAGTGCTTGATACGTC-TG----T-AA-------AGAGCAAA-------------TCG--------ACAAGG------AGAT--AAGTGGTC--AAAGGAGTTGTTCAATCTTCAAATT----T-A---T---GC--GTAA--------TTGGGGATTATTTTTT-------TAGTTGATCAATGGAC---ACAGCTATCA-AA--TACTGGT-TCA-----AGAAAATAATTGAAAAGTG-CTG-CGAT----AAAAGAA--GAATTTGG-A-A--ATCTATTTTTG-AATATTTTCAAGTTGA-TAAGTTTCTCG-TTTAAAA-AATCTGTTTGTTTCTTTTCTTTCCTTGT-ATTTCGTGG-TAGTGGATGT-CAATGTAATGA-T--CATGTT-------GTTATATCAC------AGACATA--GAATTACCG--GTCCT------GT-TATTT--T-CCATTG-CCA-TA-GACAA-CAATGGTAGA--GAACAA-TGCGTAA-TACTG---AC-TCTAATTCATTCA-ttggt
gi|8 : agaaGTATGCA---GGAATCTT-ACG---------ATACAT----------T-T-----------------T-T-AGTGCT---G-TATA-TACAATGCCTT--TCCGTTT--G-TATCTATATC-ACGTG------------------GTAA--------------TCG--------ACAAGT------AGGTTAAAGac
gi|13 : ttcagtaccaccatattacgccaaacttccagtatgtctcatgtgtgttcGTTGGG----TTATATA---------TATG----------------T-TTGGTGCT---G-TATA-CACACTGCCGT--CTTGTTTCCA-TACTGA--TC-TCGTG----TATAGTAATATTGAGTAG--------------ATG--------ACAAAG------TGG-----GTGGT-----GGA-GTTTTTAAATAGTTAAATT----TTAATTTCTAGCTGGTGGAATTTTTTTCTGGGATTGTTTTTTTCGATGCGTATCGAT-A-TTAACTGTAACAATA-CATAAATTA--TG----A-----AG-AA-TAAATGCAAGGTGGTT--CGAT----TAAAATACGGAATT--G-G-AAGATATATTTTTGAAATATTTTTCAAT--A-T-AGTTTacataaattcgtgaagaaaacaatgcgttaaaagtctaaacctggttcggaagacatgttaaaacatttactttttcctgcgtcgatgaggattaatttgatgatggatccattagcatatgtatttcaaaactactgatcagaggaatttcgaggtgggtgagctataaaacagatgtttagatctcatctttaaagtttttggttttatttcgtattaatttccttccttgt
gi|9 : ----------------T-T-AGTGCT---G-TATA-TACAATGCCTT--TCCGTTT-TG-TACTTATATC-ACGTGGTAATCGA-------CAAGTAGGTATAAACATAAATTCGTGAAGAAAACAATGCGTTAAAAGTCTAACTGGTTGCGAAGA-CATGTTAAAACATTTACTT----TTT---CCT-GC--GTCG--------ATGAGGATTAATTTGA-------TGATGGATCA-TTAGC---ATATGTATCA-AAACTACTGGA-TCAG----AGGGA--ATTTCG-AGGTGGGTGACTAT----AAAAACA--GAATT--T-T-AG-ATCTATTTT---A------------------AGTTTTTGGTTTT------ATTTCG-T-ATTAATTTCCTTCCTTG
gi|10 : ttcagtaccaccatatacgcaaacttccagttatgtctcatgtgtgttctgtatgcaggaatttccgatacatttGTCTAAGTGGTTGCTAAGA-AATGTTAAACATT--ACTT----TTC---TCT-GC--GTCG--------ATGAGGTTAATTTGAT--------GATACATCA-TTAGC---ATATGTATCA-AAACTACTGGGGTCAG----AGGAA--ATTTCGAG-GTGGGTGACTAT----AAAAACA--GAA-----------ATTTATATCT------TTTTTAAGTT---------TTTGGTTTCA------TTTTGTT-TTCAGTT-CCTTCCTTGt
gi|14 : atttcagtaccaccattatacgcaaatttccagttacatttcatgtctttgctgtatgcaggattttccgatacgttttagtactgtatatacaatgcattttcgttttgtactttatcacgtggtaattgacaataggtatcaatatgaaatggcgaagaaaactttgtgctaaatAT----AAAAGCA--GAATT--G-G-A--GACCGATTTTG-AATATTTTCAA-TTGAAT-AGTTCTAAA----AAAA-AATCTGG-T-TTTCGTTTTCGTCCTTGTATCTGTGTGA-TAGTGGTTGTACAATAAAATG--T--AATGCTATTATTCA------CAC------GGAC--A--AAA-TCACGGATTCCTGGTTTGGT-T-TTTTTT-TCATTTTCTA-TA-AAC-A-CTATGATAAT--GAACAA-C---C-A-TACTG---GCTTCTAt
gi|1 : cgTTTCCTT--TAAA-TCTG--TGA-TAGTGGTTCCACG-TGTAATCAAT---ATGTT-------ATTATATCAT------GGAC--A--AAATTCCCG--ATTCT------GTGT-TTTGCT-TCATTGTCCAATAAGACCA-C-ATGATAGATGAAAGAAAC---T-A-TACTG---ACTTCTAATTCATAAAGCATAC----TTGTATTT-AAAGCACTGTCTA--ACGCGGTGTTTTGTG-AAAT-T-ACCAGACATA--CAA-TTAAACAAAGTTGGAGTTTCCGTTACCCTTGCTTTTG-ATGCAAGTC-CAGTAT
gi|11 : TTCCTTGT-ATTTCGTGG-TAGTGGATGT-CAATGTAATGA-T--CATGTT-------GTTATATCAC------AGAC--ATAGAATTACCG--GTCCT------GT-TATTT--T-CCATTG-CCA-TA-GAC-AACAATGGTAGA--GAACAA-TGCGT-AATACTG---ACT-CTAATTCATTCAACAATCATA-CTGTATTTAAA--CATTGCATTGAAT-CGGT-CTTTGTGTAAATGTAACCAAACATACATAA-TT-AACAA-GGGGGTGTTTCCGAAG---TTGCCGTTT-AACTCAGACTCAGTAaacgtatgataaacccgagcattgtcatgcttcaggcattactgaataaatatttagttttttcgaaatgtgtcactttactggtcaattcactgaaaattccatctttatcataatctctttttttgcaataaaagatggggaaaggtgacaaaaatcaaattcgaaaaggtgaaagttggccattcggacacatttttttttagccaaaaggtggtataaaagttgaacaattgggcagaaaaaaggtacactgaagtgatttaggtacagaaagatcacaaaagattatattttatatattgaatgaacagaagaagaaaggtgatatttttttctgctttgaaggtgtaaatgttagccacaatagacaccttcttctaacataaggtgtgacacaatttgaacttttggcataaaaaagtggtatgaacaagaattgttttaaatggtatcaaggtcaaaaggtaatcttttaaaattctgaaaagaatggagaaaaggcgacatttttcatcaaacaagaaaggtgtaaaagtggacatttgaagaccttgtttatctaccaaaaagggtccctttgtttccttaaaaatacaaaaggtgcacaaaaggtgtaaaagatcttaaaaggtgtctttttaatatctttttggaagta
gi|2 : TTTATACA-CATGCATACTTGTATTT-AAAGCACTGCCT---AC-CGGTGTTTTGTG-AAAT-TAACCAGATATA--CAATT--AGCAAAGTGGGAGTTTACAGGG-CCTTGCATTTTGATCCAAGTC-CAGTATGagataatctcgaacatccagttcagtattattgataaaaatcattttggaatgtgtca
3 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|6 ): TTTTTTTTTGCAATGGAAATATGGAGAAGGTGACATATCAAATTCGAAAGTTGACTATTCGGACACCTATTTCTAACCAAAAGTTGTAAAAAAGTTGAACATTTGGCATAGAAAGGTACAATGATATGATATTTATGAAATTAAAGAAATATCACAAAATCCTTTTATATATTGAATGAAAAGATAAAGAAAGGTGACATTATCTGCGTTGAAAGGCGAAAATGTTGGTCACAAGGACACCTTTTATCTAACAAAGGGTGTACACACTTTTGGCATAAAAGGTACAATGAGGATTATTATAATGGTATCAAAGGTCAAAAATGTAATCTTTTATATGCTGAAATGGAAAAAGGTGACATTTTATCAAATTTAAAAGTGTAAAAGTGGACCATTTGAAGACTTTTTTATCTACCAAA
Unaligned ( gi|15 ): CTTTTGTGCCTGCAATGGAAATATGGAGAAGGTGACATATCAAATTCGAAAGTTGACTATTCGGACACCTATTTCTACCAAAAGTTGTAAAAAAGTTGAACATTTGGCATAGAAAAGGTACAATGAATATGATATTTATGAAATTAAAGAA
Unaligned ( gi|16 ): CGACATTTAATCAAAATTATGGAAAGGTTAAAAGTGGACTATTGAAGACTTTTTAATCTACCAAACAG
Alignments
lowQualScore : 2 33 11 1 1 2 33333 11 1 3333333333 1111 4444444444444444444 111 777777777777777777777777777777777777777777777777 222222 222222222222 111111111111 1 1111 11 111111111 55555555555555555555555 2222222 111111 11 11 22222222 11 1 333333 1 1 1111 1 222 1 1 1 11 1 11 1 1
lowQualScore : 3 1 00 1 33 88 0 0 2 55 2 0 1 99999 6 3 33 333 3 8 0 5 0 0 5555555555 5 0000 2222222222222222222 8 66 4 4 1 3 2 000 0 33 1 66 999999999999999999999999999999999999999999999999 888888 3 66 4 66 2 4 33 55 9999 9999 1 1 222222222222 666666666666 1 4 88888 2 22 66 4 1 8888 3 55 7 2 2 7 1 4444 1 4 00 4 888888888 33333333333333333333333 5 2 1 3333333 0 888888 2 77 6 7 6 44 6 3 99 88 99 99999999 11 6 7 6 6 6 3 7 6 1 444444 0 1 6 1 1111 0 6 777 0 2 0 0 3 33 3 0 9 4 22 66 1 0 0 1
lowQualScore : . . .. . .. .. . . . .. . . . ..... . . .. ... . . . . . . .......... . .... ................... . .. . . . . . ... . .. . .. ................................................ ...... . .. . .. . . .. .. .... .... . . ............ ............ . . ..... . .. .. . . .... . .. . . . . . .... . . .. . ......... ....................... . . . ....... . ...... . .. . . . .. . . .. .. .. ........ .. . . . . . . . . . ...... . . . . .... . . ... . . . . . .. . . . . .. .. . . . .
lowQualScore : 3 0 77 0 00 33 0 0 5 88 5 0 0 88888 5 2 88 888 8 0 8 0 0 8 0000000000 0 6666 4444444444444444444 9 33 4 4 9 9 7 888 8 88 0 11 000000000000000000000000000000000000000000000000 888888 7 11 4 66 9 4 22 88 4444 9999 0 0 888888888888 333333333333 0 4 66666 3 00 11 4 9 2222 3 99 3 6 7 3 0 0000 0 4 99 4 444444444 22222222222222222222222 0 7 4 1111111 4 999999 7 77 7 3 7 22 7 2 22 33 22 00000000 88 7 3 7 7 7 3 8 7 0 666666 6 0 4 0 0000 0 5 555 0 5 0 0 2 88 2 0 2 0 00 55 0 0 0 2
consensus : TGG-AATAGTGTGTCT--CTAAGTGTATGCAAGGTGGTAACTCAT-TTGGACTC-CAATNACTATTGTCAGT-ATTTTAATGAGACGGTAC-AATTTGTCCGTTAA--GAGAACTAAGATTTA-TTTCAGTCCCAGTATACACGCAGACTCTT----------CACGTTGG-G----ATGTAT-------------T-A---TGTT-GGTGCTG-TATA-CACACTGCCTTCCCGTTT-C-GTACTTGTATCNCGT--G----TNNA-------CGAGTAA---------------TCG--------ACAAGG------AGGTCTAAG--TGGT-CGCGAAGAGTTGT-TAAATCTTCAAATT----TTN---TCTGCGTCGNTG------------GGGATTATTTTTNTGG-------TNGAT-CATTG---G-CANANGTA--TCA-AAATTACT-GGNTCA-AG-AAATANTTCGAAGGTGGNT--G-CNA-TAAAA-GCAGA-ATT--G-G-A--ATCTATTTTTG-AATA-TTTTCAA-TTG-AT-AGTTT-TCGGTTTTAAAA-AATCTGGTT-TTTCGTTTCCTTCCTTGTATCTGCGTG-ATAGTGGTTGTACGAT-GTAATNATCATGCTAT-TATAT--CACGGAC--AAAATTACCGG--TCCTG--TT----TTTGCT-TCATTGTCC-AT-AGA-C-ACGATGATAGA-GAACAACGCGTAATACTGACTTCTAATTCATACAACATGCATA-TTGTATTT-AAAGCACTGCCT---AC-CGGTGTTTTGTG-AAAT-TAACCAGACATAC--AATT-AACAAAGTGGGNGTTTCCGGGG-CCTTGCCTTTT-ATC-CAAGTCCAGTATG
Reference ( family-110 ) : TGGCAANAGTGTGTCTAACNAAGTGTATNCAAGGTGGTAANTCAT-TTGGACTC-CAATCACTATTGTCAGT-ATTTTAATNAGACGN----AATTTGTCCGTTAA--GAGAANTAAGATTTA-TTTCAGTCCCAGTATACACGCAGACTCTT----------CACGTTGG-G----ATGTAT-------------T-A---TATT-GGTGCTG-TATA-CACACTGCCTTCCCGTTT-C-GTACTTGTATCNCGT--G----TNNA-------CGAGTAA---------------TCG--------ACAAGG------AGGTCTAAG--TGGT-CGCGAAGAGTTGT-TAAATCTTCAAATT----TTA---TCTGCGTNGNTG------------GGGATTATTTTTTNGG-------TNGAT-CATTG---G-CAAANNTA--TCA-AAATTACT-GGNTCA-AG-AAATANTTCGAAGGTGGNT--G-CNA-TAAAA-GCAGA-ATT--G-G-A--ATCTATTTTTG-AATA-TTTTCAAGTT--AT-AGTTT-TCGGTTTTAAAA-AATCTGGTT-TTTCGTTTCCTTCCTTGTATCTGCGTG-ATAGTGGTTGTACGAT-GTAATGATCATGTTAT-TATAT--CACGGAC--AAAATTACCGG--TCCTG--TTA---TTTGCT-TCATTGTCC-AT-AGA-C-ACGATGATAGA-GAACAACGCGT-ATACTGACTTCTAATTCATNCAGCATNCATA-TTGTATTT-AAAGCACTGCCT---AC-CGGTGTTTTGTG-AAAT-TAACCAGACATAC--AATT-AACAAAGTGGGAGTTTCCGNNG-CCTTGCNTTTT-ATC-CAAGTCCAGTATG
gi|1 : TTTCCTT---TAAATCTG--TG-ATAGTGGTTCCACG-T-GTAATCAATATGTTAT-TATAT--CATGGAC--AAAATTCCCGA--TTCTG--TGT---TTTGCT-TCATTGTCCAATAAGACC-AC-ATGATAGATGAAAGAAAC-T-ATACTGACTTCTAATTCATAAAGCATAC----TTGTATTT-AAAGCACTGTCTA--ACGCGGTGTTTTGTG-AAAT-T-ACCAGACATAC--AATTAAACAAAGTTGGAGTTTCCGTTACCCTTGCTTTTG-ATG-CAAGTCCAGTAT
gi|10 : TT-AGTACTG-TATA-TACAATGCATTTTCGTTT-T-GTACTT-TATCACGT--G------------------GTAA---------------TTG--------ACAAaacgtatgataaacccgagcattgtcatgcttcaggcattactgaataaatatttagttttttcgaaatgtgtcactttactggtcaattcactgaaaattccatctttatcataatctctttttttgcaataaaagatggggaaaggtgacaaaaatcaaattcgaaaaggtgaaagttggccattcggacacatttttttttagccaaaaggtggtataaaagttgaacaattgggcagaaaaaaggtacactgaagtgatttaggtacagaaagatcacaaaagattatattttatatattgaatgaacagaagaagaaaggtgatatttttttctgctttgaaggtgtaaatgttagccacaatagacaccttcttctaacataaggtgtgacacaatttgaacttttggcataaaaaagtggtatgaacaagaattgttttaaatggtatcaaggtcaaaaggtaatcttttaaaattctgaaaagaatggagaaaaggcgacatttttcatcaaacaagaaaggtgtaaaagtggacatttgaagaccttgtttatctaccaaaaagggtccctttgtttccttaaaaatacaaaaggtgcacaaaaggtgtaaaagatcttaaaaggtgtctttttaatatctttttggaagta
gi|10 : atttcagtaccaccattatacgcaaatttccagttacatttcatgtctttgctgtatgcaggattttccgatacgttGTCTAAG--TGGT-TGCTAAGAAATGT-TAAACATT--ACTT----TTC---TCTGCGTCGATG------------AGG-TTAATTTGATGA-------TACAT-CATTA---G-CATATGTA--TCA-AAACTACTGGGGTCAGAG-GAA-ATTTCG-AGGTGGGT--GACTA-TAAAA-ACAGA----------A--ATTTAT-------ATC-TTTT----TT--A--AGTTT-TTGGTTTC------ATTTTG-T-TTTCAGTTCCTTCCTTGTtaggtatcaatatgaaatggcgaagaaaactttgtgctaaatgtctaagtggttgctaagaaatgttaaacattacttttctctgcgtcgatgaggttaatttgatgatacatcattagcatatgtatcaaaactactggggtcagaggaaatttcgaggtgggtgactataaaaacagaaatttatatcttttttaagtttttggtttcattttgttttcagttccttccttgt
gi|11 : atttcagtaccaccattatacgcaaatttccagttacatttcatgtctttgctgtatgcaggattttccgatacgttttagtactgtatatacaatgcattttcgttttgtactttatcacgtggtaattgacaataggtatcaatatgaaatggcgaagaaaactttgtgctaaatTTCCTTGTATTT-CGTG-GTAGTGGATGT-CAAT-GTAATGATCATGTTGT-TATAT--CACAGACATAGAATTACCGG--TCCTG--TTA---TTT--T-CCATTG-CC-AT-AGA-CAACAATGGTAGA-GAACAATGCGTAATACTGAC-TCTAATTCATTCAACAATCATA-CTGTATTT-AAA-CATTGCATTGAAT-CGGT-CTTTGTGTAAATGTAACCAAACATACATAATT-AACAAGG-GGGTGTTTCCGAAG---TTGCCGTTT-AACTCAGACTCAGTA
gi|12 : T-TTGGATCC-CAATCAC-ATGAT-AGTGATTTTAATAAGACGATAC-AATTTGTCCATTAA--GAGAAGTAAGATTCA-TTTCAA--CCA-TATACACTCA-ACTCTT----------GCTGTTAG-GTTATATATAT-------------T-A---TGT--GGTGCTG-TATA-CACATT--CTTCCTGTTT-C-ATACTTGTATCGTGT--A----TAAA-------C-AGCAA---------------TCA--------ACAAGG------AGGTCTAAG--TGGT-CGTGAAGTGTTCT-TAAATCTTCAAATT----TTA---TCTGCGTAGCTG------------TGAATTATTTTTCTGG-------TTGAT-CATTG---T-CAAATATA--TCA-GAATTACG-GGATCA-GA-AAATAGTTTGAAagataatctcgaacatccagttcagtattattgataaaaatcattttggaatgtgtca
gi|13 : cGTTGG-G----TTATATA------------T-A---TGTTTGGTGCTG-TATA-CACACTGCCGTCTTGTTTCC-ATAC-TG-ATCTCGT--G----TATAGTAATATTGAGTAG---------------ATG--------ACAAAG------TGG-----G--TGGT------GGAGTTTT-TAAATAGTTAAATT----TTAATTTCTA-GCTGGTGGAATTTTTTTCTGGGATTGTTTTTTTCGATGCGTATCGAT--ATTAACTG-TAACAATA---CATAAATTA-T-G----A-AG--AATAAATGCAAGGTGGTT----CGATTAAAATACGGA-ATT--G-G-AAGATATATTTTTGAAATATTTTTCAA--T--AT-AGTTT-ttggt
gi|14 : -CGA-TAAAA-GCAGA-ATT--G-G-A--GACCGATTTTG-AATA-TTTTCAA-TTGAAT-AGTTC-TAAA----AAAA-AATCTGGTT-TT-CGTTTTCGTCCTTGTATCTGTGTG-ATAGTGGTTGTACAAT-AAAATG-TAATGCTAT-TAT-TCACACGGAC--AAAATCA-CGGATTCCTGGTTTGGTTTTTTTT-TCATTTTCT-AT-AAA-C-ACTATGATAAT-GAACAAC---C-ATACTGGCTTCTA
gi|2 : TTTATACA-CATGCATACTTGTATTT-AAAGCACTGCCT---AC-CGGTGTTTTGTG-AAAT-TAACCAGATATAC--AATT-AGCAAAGTGGGAGTTTACAGGG-CCTTGCATTTTGATC-CAAGTCCAGTATG
gi|3 : TGG-AATAGTGTGTCT--CTAAGTGTATG-AAGGTGGTAACTCAT-TTGGACTC-CAATAACTATTGTCAGT-ATTTTAATGAGACAG----AATTT-TCCGTTAA--GAGTTCTAAGATTTA-TTTCAGTCCCAGTATACACGCAGACTCTT----------CACGTTGG-A----ATGTAT-------------T-A---TATT-GGTGATG-TATA-CACACTCTCTTCCTGTTT-C-ATACTTGTTTCTCGT--G----TTCA-------CGAGTAA---------------TCG--------ACAAGG------AGGTTTAAG--TGAT-CGCAAAGGGTTGT-TCAATCTTCAAATT----TTA---TCTGCGTAGTTG------------GGGATTATTTTTTAGA-------TTGAT-CATTG---A-CAAAGATA--TCA-GAATTACT-TGTTCA-AG-AAATATTTTGAAAGTGGCT--G-CCA-TTAAA-GAAGA-ATT--G-G-A--ATCTATTTTTG-AATG-TTTTCAAGTTG-AT-AGTTT-TTTGTTTTAAAA-AATCTGGTT-TTTTGTTTCCTTCCTTGC-TCTGCATG-ATAGTGGTTGTACGAT-GTAATT-TCATGCTA---------CACGGAC--AAAATTCCCGT--TCCTG--TT----TTTGCT-TCATTGTCC-AT-AGA-C-ACGATGATAGA-GAAGAAC---T-ATACTGACTTCTAATTCATACA-CATGCACA-TTGTATTTAAAAACACTGCCT---AC-CGGTGTTTTGTG-AAAT-TAACCAGACATAT--AA-T-AACAAAGGGGGTGTTTCCGGGA-TCTTGTCTTTT-ATC-CAAGACCAGTATGataaaccgaaaannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnactcttttttgcaatggaaagatggaaaaaggtgacatatcaaattcgagagatgtaaaggtttgccattttgacacctttttctaccaaagggtgtaccaaaagttgaacatttggcatagaaaaggtacaatgaagatgatttttatgatattaaaggtacaaaaaggtcacaacagatcatttttatatattgcatgaaaagataaagaaagtgacattatctgcgttaaaaggtgtaaaagttggccacatgaacatcttttttctaacaaaaggtgtacacaatttgaaattttggcaaaaaaaaggtacaacgaagattattttaatggtatcaaaggtcaaaaaggtaatcatttatatactgaaaagatggagaaaggtgacattttatcaaatttgaaaggtgtaaaagtgaaccatttgaaggtgttttatctaccaaaaggtgtcctttgtttccttaaaatacaaaaggtgcacaaaaggtatagagagatatttagaaggtggtctttttatatcttttagagtacacagaagaacatttttttcgtgcagttagtataatgt
gi|4 : TGG-AAAAATGTGTCTAACAAAATATATTTAAGATAATAAA-CACCTTCGACTCACAAGCA-TATTGACGGT-GATTTGTTTAAACGATATCAATTTGTCCA--AATGGAGAAACAAGACTTAATTTCAGTCCCACCATACACGCAGACTTTCGAATTAAATGCATGATGGTG----CTGTATACAGGATTTCCGTC-AAATTGTT-GGTACAG-TAAAATACACTGCCTTCC--------GT-----TATCCTTT--G----TTAA-------CG-TTAA----------------CG--------GCAAGG------AGATTTGAG--TGGT-CACGAAGA-TTGTAGAAGT-----GATTGCTGTTC---TCTGCGTCGATG------------AGAATTATTCTC-AGG-------TGAAT-GACAG---G-CAAACTTA--TCA-AA-TTACT-ACATAG-GG-AGA-AATTTGAAGTTG-AT--A-GGA-TAAAA--CAGA-ATT--TTG-A--ATTTATTTTAA-AAT------CAA--------AATTT-TCAGTTTAAAAATAATGTG-----TTCATTTC-TTCCTTGTATCTGCGTGAAGAGTGGTGATACGATAGT--TTTCCAAGCTATATTTAT--C-TAGAC--AAAATCACCGG--TCCTG----------TGCTCTCAATGTCC-AT-AGA-C-ATGATAATATA-AAATAA
gi|5 : AGAACTAAGATT-A-TATCAGTCCCCGTAGACACGCA-AC-CTT----------CATGTTCG-G----GTGTAT-------------TTA---TAT--GGTGATGGTATA-CACATTTTCTTGCCCTGT-CAGTGCTTG-AT-ACGTCTG----TAAA--------GAGCAAA--------------TCG--------ACAAGG------AGAT--AAG--TGGT-CA-AAGGAGTTGT-TCAATCTTCAAATT----T-A---T--GCGTAATTG------------GGGATTATTTTTTTAG-------TTGAT-CAATG---GACACAGCTA--TCA-AA--TACT-GGTTCA-AGAAAATAATTGAAAAGT-GCT--G-CGA-TAAAA-GAAGA-ATTTGG-A-A--ATCTATTTTTG-AATA-TTTTCAAGTTG-ATAAGTTTCTCG--TTTAAAA-AATCTGTTTGTTTCTTTTCTTTCCTTGTATTT-CGTG-GTAGTGGATGT-CAAT-GTAATGATCATGTTGT-TATAT--CACAGACATAGAATTACCGG--TCCTG--TTA---TTT--T-CCATTG-CC-AT-AGA-CAACAATGGTAGA-GAACAATGCGTAATACTGAC-TCTAATTCATTCAACacatattgtctacttttt
gi|7 : TGGCAATAGTGTGTCT--CTAAGTGTATGCAAGGTGGTAACTCAT-TTGGACTC-CAATAACTATTGTCAGTTATTTTAATGAGACAG----AATTTATCCGTTAA--GAGTTCTAAGATTTA-TTTCAGTCCCAGTATACACGCAGACTCTT----------CACGTTGG-A----ATGTAT-------------T-A---TATT-GGTGATG-TATA-CACACTCTCTTCCTGTTT-C-ATACTTGTTTCTCGT--G----TTCA-------CGAGTAA---------------TCG--------ACAAGG------AGGTTTAAG--TGAT-CGCAAAGGGTTGT-TCAATCTTCAAATT----TTA---TCTGCGTAGTTG------------GGGATTATTTTTTAGA-------TTGAT-CATTG---A-CAAAGATA--TCA-GAATTACT-TGTTCA-AG-AAATATTTTGAAAGTGGCT--G-CCA-TAAAA-GAAGA-ATT--G-GAA--ATCTATTTT
gi|8 : -G----ATACAT-------------T-----T-TT-AGTGCTG-TATA-TACAATGCCTTTCCGTTT---GTATCTATATCACGT--GGTAATCGA-------CAAGTAGGTTAAAGACATAAATTCGTGAAGAAAACAATGCGTTAAAAGTCTAAACCTGGTTCG-GAAGACATGT-TAAAACATTTACTT----TTT---CCTGCGTCGATG------------AGGATTAATTTGATGA-------TGGATCCATTA---G-CATATGTATTTCA-AAACTACT--GATCAGAG-GAAT--TTCG-AGGTGGGTGAG-CTA-TAAAA--CAGATGTT--T-A-G--ATCT----------CA-TCTTTAA--------AGTTT-TTGGTTTT------ATTTCG-T-ATTAATTTCCTTCCTTGTga
gi|9 : ttcagtaccaccatattacgccaaacttccagtatgtctcatgtgtgttcgtatgcaggaatcttac-G----ATACAT-------------T-----T-TT-AGTGCTG-TATA-TACAATGCCTTTCCGTTT-T-GTACTTATATCACGT--GGTAATCGA-------CAAGTAGGTATAAACATAAAT-TCGTGAAGAAAACAATGCGTTAAAAGTCTAAC--TGGT-TGCGAAGACATGT-TAAAACATTTACTT----TTT---CCTGCGTCGATG------------AGGATTAATTTGATGA-------TGGAT-CATTA---G-CATATGTA--TCA-AAACTACT-GGATCAGAG-GGA-ATTTCG-AGGTGGGT--GACTA-TAAAA-ACAGA-ATT--T-T-AG-ATCTATTTT---A-------------------AGTTT-TTGGTTTT------ATTTCG-T-ATTAATTTCCTTCCTTGT
3 sequences could not be aligned to this reference sequence:
Unaligned ( gi|6 ): TTTTTTTTTGCAATGGAAATATGGAGAAGGTGACATATCAAATTCGAAAGTTGACTATTCGGACACCTATTTCTAACCAAAAGTTGTAAAAAAGTTGAACATTTGGCATAGAAAGGTACAATGATATGATATTTATGAAATTAAAGAAATATCACAAAATCCTTTTATATATTGAATGAAAAGATAAAGAAAGGTGACATTATCTGCGTTGAAAGGCGAAAATGTTGGTCACAAGGACACCTTTTATCTAACAAAGGGTGTACACACTTTTGGCATAAAAGGTACAATGAGGATTATTATAATGGTATCAAAGGTCAAAAATGTAATCTTTTATATGCTGAAATGGAAAAAGGTGACATTTTATCAAATTTAAAAGTGTAAAAGTGGACCATTTGAAGACTTTTTTATCTACCAAA
Unaligned ( gi|15 ): CTTTTGTGCCTGCAATGGAAATATGGAGAAGGTGACATATCAAATTCGAAAGTTGACTATTCGGACACCTATTTCTACCAAAAGTTGTAAAAAAGTTGAACATTTGGCATAGAAAAGGTACAATGAATATGATATTTATGAAATTAAAGAA
Unaligned ( gi|16 ): CGACATTTAATCAAAATTATGGAAAGGTTAAAAGTGGACTATTGAAGACTTTTTAATCTACCAAACAG
Alignments
lowQualScore : 1 11 1 1 1 2 3333 11 1 3333333333 1111 444444444444444444444 111 777777777777777777777777777777777777777777777777 222222 111111111 33333333333333 11 1111 11 222222222 22222222 4444444 1111111 111111 11 11 22222222222 11 111 2222222 1 1111 1 2222222 1 1 11 1 11111 1 1
lowQualScore : 3 88 2 7 0 0 1 55 2 0 0 1111 6 3 33 22 3 8 0 5 0 0 5555555555 5 0000 666666666666666666666 6 4 1 4 1 3 2 000 0 33 1 66 999999999999999999999999999999999999999999999999 888888 3 66 4 66 2 4 33 55 9999 777 2 2 1 333 2 4 444444444 1 11 66 1 4 2 55 00000000000000 66 11 2 2 1 33 4444 1 4 00 4 111111111 11111111 8888888 5 5 2 1 9999999 0 111111 333 77 6 7 6 22 6 3 99 88 99 33333333333 11 6 7 6 6 6 333 6 1 6666666 0 1 44 0 1111 0 6 2222222 2 0 0 3 33 3 0 9 1 55555 0 0 0 1
lowQualScore : . .. . . . . . .. . . . .... . . .. .. . . . . . . .......... . .... ..................... . . . . . . . ... . .. . .. ................................................ ...... . .. . .. . . .. .. .... ... . . . ... . . ......... . .. .. . . . .. .............. .. .. . . . .. .... . . .. . ......... ........ ....... . . . . ....... . ...... ... .. . . . .. . . .. .. .. ........... .. . . . . . ... . . ....... . . .. . .... . . ....... . . . . .. . . . . ..... . . . .
lowQualScore : 3 33 0 3 0 0 0 88 5 0 2 0000 5 2 88 88 8 0 8 0 0 8 0000000000 0 6666 111111111111111111111 5 4 1 4 9 9 7 888 8 88 0 11 000000000000000000000000000000000000000000000000 888888 7 11 4 66 9 4 22 88 4444 888 6 9 0 999 6 4 444444444 0 99 11 9 4 9 44 44444444444444 11 88 6 7 9 55 0000 0 4 99 4 111111111 88888888 2222222 0 0 7 4 7777777 4 999999 666 77 7 3 7 77 7 2 22 33 22 33333333333 88 7 3 7 7 7 888 7 0 8888888 6 4 66 2 0000 0 5 5555555 5 0 0 2 88 2 0 2 0 00000 2 0 0 2
consensus : TGG-AATAGTGTGTCT--CTAAGTGTATGCAAGGTGGTAACTCAT-TTGGACTC-CAATNACTATTGTCAGT-ATTTTAATGAGACGGTA-CAATTTGTCCGTTAA--GAGAACTAAGATTTA-TTTCAGTCCCAGTATACACGCAGACTCTT----------CACGTTGG-G----ATGTAT-------------T---A---TGTT-GGTGCTGTATA-CACACTGCCTTCCCGTTT-C-GTACTTGTATCNCGT--G----TNNA-------CGAGTAA---------------TCG--------ACAAGG------AGGTCTAAG--TGGT-CGCGAAGAGTTGT-TAAATCTTCAAATT----T---TNTCTGCGTCGNTGGGGATTATTTTTNTGGTNGAT-CATT------GG-CANACGTA--TCAAAATT-ACTGGA-TCA-A------------GA--AA-TANTTCGAAGGTGGNT--G-CNA-TAAAA-GCAGA-ATT--G-G-A--ATCTATTTTTG-AATA-TTTTCAA-TTGA-TA-GTTT-TCGGTTTTAAAA-AATCTGGTT-TTTCGTTTCCTTCCTTGTATCTGCGTG-ATAGTGGTTGTACGAT-GTAATNATCATGCTAT-TATAT--CACGGACA--AAATTACCGG--TCCT------GT-T-TTTGCT-TCATTGTCCA-TA-GAC-A-CGATGATAGA-GAACAACGCGTAATACTGACTTCTAATTCATACAACATGCATA-TTGTATTT-AAAGCACTGCCT---A-C-CGGTGTTTTGTG-AAAT-TAACCAGACATAC--AATT-AACAAAGTGGGNGTTTCCG-GGGCCTTGCCTTTT-ATC-CAAGTCCAGTATG
Reference ( family-110 ) : TGG-AATAGTGTGTCT--CTAAGTGTATGCAAGGTGGTAACTCAT-TTGGACTC-CAATNACTATTGTCAGT-ATTTTAATGAGACGGTA-CAATTTGTCCGTTAA--GAGAACTAAGATTTA-TTTCAGTCCCAGTATACACGCAGACTCTT----------CACGTTGG-G----ATGTAT-------------T---A---TGTT-GGTGCTGTATA-CACACTGCCTTCCCGTTT-C-GTACTTGTATCNCGT--G----TNNA-------CGAGTAA---------------TCG--------ACAAGG------AGGTCTAAG--TGGT-CGCGAAGAGTTGT-TAAATCTTCAAATT----T---TNTCTGCGTCGNTGGGGATTATTTTTNTGGTNGAT-CATT------GG-CANANGTA--TCAAAATT-ACTGGN-TCA-A------------GA--AA-TANTTCGAAGGTGGNT--G-CNA-TAAAA-GCAGA-ATT--G-G-A--ATCTATTTTTG-AATA-TTTTCAA-TTGA-TA-GTTT-TCGGTTTTAAAA-AATCTGGTT-TTTCGTTTCCTTCCTTGTATCTGCGTG-ATAGTGGTTGTACGAT-GTAATNATCATGCTAT-TATAT--CACGGACA--AAATTACCGG--TCCT------GT-T-TTTGCT-TCATTGTCCA-TA-GAC-A-CGATGATAGA-GAACAACGCGTAATACTGACTTCTAATTCATACAACATGCATA-TTGTATTT-AAAGCACTGCCT---A-C-CGGTGTTTTGTG-AAAT-TAACCAGACATAC--AATT-AACAAAGTGGGNGTTTCCG-GGGCCTTGCCTTTT-ATC-CAAGTCCAGTATG
gi|1 : TTTCCTT---TAAATCTG--TG-ATAGTGGTTCCACG-T-GTAATCAATATGTTAT-TATAT--CATGGACA--AAATTCCCGA--TTCT------GTGT-TTTGCT-TCATTGTCCAATAAGACCA-C-ATGATAGATGAAAGAAAC-TA-TACTGACTTCTAATTCATAAAGCATAC----TTGTATTT-AAAGCACTGTCT---AACGCGGTGTTTTGTG-AAAT-TA-CCAGACATAC--AATTAAACAAAGTTGGAGTTTCCGTTACCCTTGCTTTTG-ATG-CAAGTCCAGTAT
gi|10 : TT-AGTACTGTATA-TACAATGCATTTTCGTTT-T-GTACTT-TATCACGT--G------------------GTAA---------------TTG--------ACAAaacgtatgataaacccgagcattgtcatgcttcaggcattactgaataaatatttagttttttcgaaatgtgtcactttactggtcaattcactgaaaattccatctttatcataatctctttttttgcaataaaagatggggaaaggtgacaaaaatcaaattcgaaaaggtgaaagttggccattcggacacatttttttttagccaaaaggtggtataaaagttgaacaattgggcagaaaaaaggtacactgaagtgatttaggtacagaaagatcacaaaagattatattttatatattgaatgaacagaagaagaaaggtgatatttttttctgctttgaaggtgtaaatgttagccacaatagacaccttcttctaacataaggtgtgacacaatttgaacttttggcataaaaaagtggtatgaacaagaattgttttaaatggtatcaaggtcaaaaggtaatcttttaaaattctgaaaagaatggagaaaaggcgacatttttcatcaaacaagaaaggtgtaaaagtggacatttgaagaccttgtttatctaccaaaaagggtccctttgtttccttaaaaatacaaaaggtgcacaaaaggtgtaaaagatcttaaaaggtgtctttttaatatctttttggaagta
gi|10 : atttcagtaccaccattatacgcaaatttccagttacatttcatgtctttgctgtatgcaggattttccgatacgttGTCTAAG--TGGT-TGCTAAGAAATGT-TAAACATT--ACTT----T---TCTCTGCGTCGATGAGG-TTAATTTGATGATACAT-CATT------AG-CATATGTA--TCAAAACT-ACTGGGGTCAGA------------GG--AA--ATTTCGA-GGTGGGT--GACTA-TAAAA-ACAGA-A-----------ATTTATATCT-------TTTTTAA---------GTTT-TTGGTTTCA------TTTTGTT-TTCAGTT-CCTTCCTTGTtaggtatcaatatgaaatggcgaagaaaactttgtgctaaatgtctaagtggttgctaagaaatgttaaacattacttttctctgcgtcgatgaggttaatttgatgatacatcattagcatatgtatcaaaactactggggtcagaggaaatttcgaggtgggtgactataaaaacagaaatttatatcttttttaagtttttggtttcattttgttttcagttccttccttgt
gi|11 : atttcagtaccaccattatacgcaaatttccagttacatttcatgtctttgctgtatgcaggattttccgatacgttttagtactgtatatacaatgcattttcgttttgtactttatcacgtggtaattgacaataggtatcaatatgaaatggcgaagaaaactttgtgctaaatTTCCTTGTATTT-CGTG-GTAGTGGATGT-CAAT-GTAATGATCATGTTGT-TATAT--CACAGACATAGAATTACCGG--TCCT------GT-TATTT--T-CCATTG-CCA-TA-GAC-AACAATGGTAGA-GAACAATGCGTAATACTGAC-TCTAATTCATTCAACAATCATA-CTGTATTT-AAA-CATTGCATTGAA-T-CGGT-CTTTGTGTAAATGTAACCAAACATACATAATT-AACAAGG-GGGTGTTTCCG-AAG--TTGCCGTTT-AACTCAGACTCAGTA
gi|12 : T-TTGGATCC-CAATCAC-ATGAT-AGTGATTTTAATAAGACGATA-CAATTTGTCCATTAA--GAGAAGTAAGATTCA-TTTCAA--CCA-TATACACTCA-ACTCTT----------GCTGTTAG-GTTATATATAT-------------T---A---TGT--GGTGCTGTATA-CACATT--CTTCCTGTTT-C-ATACTTGTATCGTGT--A----TAAA-------C-AGCAA---------------TCA--------ACAAGG------AGGTCTAAG--TGGT-CGTGAAGTGTTCT-TAAATCTTCAAATT----T---TATCTGCGTAGCTGTGAATTATTTTTCTGGTTGAT-CATT------GT-CAAATATA--TCAGAATT-ACGGGA-TCA-G------------AA--AA-TAGTTTGAAagataatctcgaacatccagttcagtattattgataaaaatcattttggaatgtgtca
gi|13 : cGTTGG-G----TTATATA------------T---A---TGTTTGGTGCTGTATA-CACACTGCCGTCTTGTTTCC-ATAC-TG-ATCTCGT--G----TATAGTAATATTGAGTAG---------------ATG--------ACAAAG------TGG-----G--TGGT------GGAGTTTT-TAAATAGTTAAATT----TTAATTTCTA-GCTGGT-GGAATT-TTTTTCTGG--GAT-TGTTTTTTTCG---ATGCGTA--TCGATATTAACTGTA-ACA-ATACATAAATTATGAAGAA-TAAATGCAAGGTGGTT----CGATTAAAATACGGA-ATT--G-G-AAGATATATTTTTGAAATATTTTTCAA-T--A-TA-GTTT-ttggt
gi|14 : -CGA-TAAAA-GCAGA-ATT--G-G-A--GACCGATTTTG-AATA-TTTTCAA-TTGAATA-GTTC-TAAA----AAAA-AATCTGGTT-TT-CGTTTTCGTCCTTGTATCTGTGTG-ATAGTGGTTGTACAAT-AAAATG-TAATGCTAT-TAT-TCACACGGACA--AAATCA-CGGATTCCTGGTTTGGT-T-TTTTTT-TCATTTTCTA-TA-AAC-A-CTATGATAAT-GAACAAC-C---ATACTGGCTTCTA
gi|2 : TTTATACA-CATGCATACTTGTATTT-AAAGCACTGCCT---A-C-CGGTGTTTTGTG-AAAT-TAACCAGATATAC--AATT-AGCAAAGTGGGAGTTTACA-GGGCCTTGCATTTTGATC-CAAGTCCAGTATG
gi|3 : TGG-AATAGTGTGTCT--CTAAGTGTATG-AAGGTGGTAACTCAT-TTGGACTC-CAATAACTATTGTCAGT-ATTTTAATGAGACAG----AATTT-TCCGTTAA--GAGTTCTAAGATTTA-TTTCAGTCCCAGTATACACGCAGACTCTT----------CACGTTGG-A----ATGTAT-------------T---A---TATT-GGTGATGTATA-CACACTCTCTTCCTGTTT-C-ATACTTGTTTCTCGT--G----TTCA-------CGAGTAA---------------TCG--------ACAAGG------AGGTTTAAG--TGAT-CGCAAAGGGTTGT-TCAATCTTCAAATT----T---TATCTGCGTAGTTGGGGATTATTTTTTAGATTGAT-CATT------GA-CAAAGATA--TCAGAATT-ACTTGT-TCA-A------------GA--AA-TATTTTGAAAGTGGCT--G-CCA-TTAAA-GAAGA-ATT--G-G-A--ATCTATTTTTG-AATG-TTTTCAAGTTGA-TA-GTTT-TTTGTTTTAAAA-AATCTGGTT-TTTTGTTTCCTTCCTTGC-TCTGCATG-ATAGTGGTTGTACGAT-GTAATT-TCATGCTA---------CACGGACA--AAATTCCCGT--TCCT------GT-T-TTTGCT-TCATTGTCCA-TA-GAC-A-CGATGATAGA-GAAGAAC---T-ATACTGACTTCTAATTCATAC-ACATGCACA-TTGTATTTAAAAACACTGCCT---A-C-CGGTGTTTTGTG-AAAT-TAACCAGACATAT--AA-T-AACAAAGGGGGTGTTTCCG-GGATCTTGTCTTTT-ATC-CAAGACCAGTATGataaaccgaaaannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnactcttttttgcaatggaaagatggaaaaaggtgacatatcaaattcgagagatgtaaaggtttgccattttgacacctttttctaccaaagggtgtaccaaaagttgaacatttggcatagaaaaggtacaatgaagatgatttttatgatattaaaggtacaaaaaggtcacaacagatcatttttatatattgcatgaaaagataaagaaagtgacattatctgcgttaaaaggtgtaaaagttggccacatgaacatcttttttctaacaaaaggtgtacacaatttgaaattttggcaaaaaaaaggtacaacgaagattattttaatggtatcaaaggtcaaaaaggtaatcatttatatactgaaaagatggagaaaggtgacattttatcaaatttgaaaggtgtaaaagtgaaccatttgaaggtgttttatctaccaaaaggtgtcctttgtttccttaaaatacaaaaggtgcacaaaaggtatagagagatatttagaaggtggtctttttatatcttttagagtacacagaagaacatttttttcgtgcagttagtataatgt
gi|4 : TGG-AAAAATGTGTCTAACAAAATATATTTAAGATAATAAA-CACCTTCGACTCACAAGCA-TATTGACGGT-GATTTGTTTAAACGATATCAATTTGTCCA--AATGGAGAAACAAGACTTAATTTCAGTCCCACCATACACGCAGACTTTCGAATTAAATGCATGATGGTG----CTGTATACAGGATTTCCGTC---AAATTGTT-GGTACAGTAAAATACACTGCCTTCC--------GT-----TATCCTTT--G----TTAA-------CG-TTAA----------------CG--------GCAAGG------AGATTTGAG--TGGT-CACGAAGA-TTGTAGAAGT-----GATTGCTGT---TCTCTGCGTCGATGAGAATTATTCTCA-GGTGAAT-GACA------GG-CAAACTTA--TCAAA-TT-ACTACA-TAG-G------------GA--GA--AATTTGAAGTTG-AT--A-GGA-TAAAA--CAGA-ATT--TTG-A--ATTTATTTTAA-AAT------CAA-------A-ATTT-TCAGTTTAAAAATAATGTG-----TTCATTTC-TTCCTTGTATCTGCGTGAAGAGTGGTGATACGATAGT--TTTCCAAGCTATATTTAT--C-TAGACA--AAATCACCGG--TCCT------G------TGCTCTCAATGTCCA-TA-GAC-A-TGATAATATA-AAATAA
gi|5 : AGAACTAAGATT-A-TATCAGTCCCCGTAGACACGCA-AC-CTT----------CATGTTCG-G----GTGTAT-------------TTATA---TGGT-GATG--GTATA-CACATTTTCTTGCCCTGT-CAGTGCTTG-AT-ACGTCTG----TAAA--------GAGCAAA--------------TCG--------ACAAGG------AGAT--AAG--TGGT-CA-AAGGAGTTGT-TCAATCTTCAAATT----T------ATGCGTAATTGGGGATTATTTTTTTAGTTGAT-CAAT------GGACACAGCTA--TCAAA--T-ACTGGT-TCA-A------------GA--AAATAATTGAAAAGTG-CT--G-CGA-TAAAA-GAAGA-ATTTGG-A-A--ATCTATTTTTG-AATA-TTTTCAAGTTGA-TAAGTTTCTCG--TTTAAAA-AATCTGTTTGTTTCTTTTCTTTCCTTGTATTT-CGTG-GTAGTGGATGT-CAAT-GTAATGATCATGTTGT-TATAT--CACAGACATAGAATTACCGG--TCCT------GT-TATTT--T-CCATTG-CCA-TA-GAC-AACAATGGTAGA-GAACAATGCGTAATACTGAC-TCTAATTCATTCAACacatattgtctacttttt
gi|7 : TGGCAATAGTGTGTCT--CTAAGTGTATGCAAGGTGGTAACTCAT-TTGGACTC-CAATAACTATTGTCAGTTATTTTAATGAGACAG----AATTTATCCGTTAA--GAGTTCTAAGATTTA-TTTCAGTCCCAGTATACACGCAGACTCTT----------CACGTTGG-A----ATGTAT-------------T---A---TATT-GGTGATGTATA-CACACTCTCTTCCTGTTT-C-ATACTTGTTTCTCGT--G----TTCA-------CGAGTAA---------------TCG--------ACAAGG------AGGTTTAAG--TGAT-CGCAAAGGGTTGT-TCAATCTTCAAATT----T---TATCTGCGTAGTTGGGGATTATTTTTTAGATTGAT-CATT------GA-CAAAGATA--TCAGAATT-ACTTGT-TCA-A------------GA--AA-TATTTTGAAAGTGGCT--G-CCA-TAAAA-GAAGA-ATT--G-GAA--ATCTATTTT
gi|8 : -G----ATACAT-------------T-------T-TT-AGTGCTGTATA-TACAATGCCTTTCCGTTT---GTATCTATATCACGT--GGTAATCGA-------CAAGTAGGTTAAAGACATAAATTCGTGAAGAAAACAATGCGTTAAAAGTCTAAACCTGGTTCG-GAAGACATGT-TAAAACATTTACTT----T---TTCCTGCGTCGATGAGGATTAATTTGATGATGGATCCATT------AG-CATATGTATTTCAAAACT-ACT-GA-TCAGA------------GG--AA-T--TTCG-AGGTGGGTGAG-CTA-TAAAA--CAGATGTT--T-A-G--ATCT----------CA-TCTTTAA-------A-GTTT-TTGGTTTT------ATTTCG-T-ATTAATTTCCTTCCTTGTga
gi|9 : ttcagtaccaccatattacgccaaacttccagtatgtctcatgtgtgttcgtatgcaggaatcttac-G----ATACAT-------------T-------T-TT-AGTGCTGTATA-TACAATGCCTTTCCGTTT-T-GTACTTATATCACGT--GGTAATCGA-------CAAGTAGGTATAAACATAAAT-TCGTGAAGAAAACAATGCGTTAAAAGTCTAAC--TGGT-TGCGAAGACATGT-TAAAACATTTACTT----T---TTCCTGCGTCGATGAGGATTAATTTGATGATGGAT-CATT------AG-CATATGTA--TCAAAACT-ACTGGA-TCAGA------------GG--GA--ATTTCGA-GGTGGGT--GACTA-TAAAA-ACAGA-ATT--T-T-AG-ATCTATTTT-------------------A--A-GTTT-TTGGTTTT------ATTTCG-T-ATTAATTTCCTTCCTTGT
3 sequences could not be aligned to this reference sequence:
Unaligned ( gi|6 ): TTTTTTTTTGCAATGGAAATATGGAGAAGGTGACATATCAAATTCGAAAGTTGACTATTCGGACACCTATTTCTAACCAAAAGTTGTAAAAAAGTTGAACATTTGGCATAGAAAGGTACAATGATATGATATTTATGAAATTAAAGAAATATCACAAAATCCTTTTATATATTGAATGAAAAGATAAAGAAAGGTGACATTATCTGCGTTGAAAGGCGAAAATGTTGGTCACAAGGACACCTTTTATCTAACAAAGGGTGTACACACTTTTGGCATAAAAGGTACAATGAGGATTATTATAATGGTATCAAAGGTCAAAAATGTAATCTTTTATATGCTGAAATGGAAAAAGGTGACATTTTATCAAATTTAAAAGTGTAAAAGTGGACCATTTGAAGACTTTTTTATCTACCAAA
Unaligned ( gi|15 ): CTTTTGTGCCTGCAATGGAAATATGGAGAAGGTGACATATCAAATTCGAAAGTTGACTATTCGGACACCTATTTCTACCAAAAGTTGTAAAAAAGTTGAACATTTGGCATAGAAAAGGTACAATGAATATGATATTTATGAAATTAAAGAA
Unaligned ( gi|16 ): CGACATTTAATCAAAATTATGGAAAGGTTAAAAGTGGACTATTGAAGACTTTTTAATCTACCAAACAG
Alignments
lowQualScore : 1 11 1 1 1 2 3333 11 1 3333333333 1111 444444444444444444444 111 777777777777777777777777777777777777777777777777 222222 111111111 33333333333333 11 1111 11 222222222 22222222 4444444 1111111 111111 11 11 22222222222 11 111 2222222 1 1111 1 2222222 1 1 11 1 11111 1 1
lowQualScore : 3 88 2 7 0 0 1 55 2 0 0 1111 6 3 33 22 3 8 0 5 0 0 5555555555 5 0000 666666666666666666666 6 4 1 4 1 3 2 000 0 33 1 66 999999999999999999999999999999999999999999999999 888888 3 66 4 66 2 4 33 55 9999 777 2 2 1 333 2 4 444444444 1 66 66 1 4 2 55 00000000000000 66 11 2 2 1 33 4444 1 4 00 4 111111111 11111111 8888888 5 5 2 1 9999999 0 111111 333 77 6 7 6 22 6 3 99 88 99 33333333333 11 6 7 6 6 6 333 6 1 6666666 0 1 44 0 1111 0 6 2222222 2 0 0 3 33 3 0 9 1 55555 0 0 0 1
lowQualScore : . .. . . . . . .. . . . .... . . .. .. . . . . . . .......... . .... ..................... . . . . . . . ... . .. . .. ................................................ ...... . .. . .. . . .. .. .... ... . . . ... . . ......... . .. .. . . . .. .............. .. .. . . . .. .... . . .. . ......... ........ ....... . . . . ....... . ...... ... .. . . . .. . . .. .. .. ........... .. . . . . . ... . . ....... . . .. . .... . . ....... . . . . .. . . . . ..... . . . .
lowQualScore : 3 33 0 3 0 0 0 88 5 0 2 0000 5 2 88 88 8 0 8 0 0 8 0000000000 0 6666 111111111111111111111 5 4 1 4 9 9 7 888 8 88 0 11 000000000000000000000000000000000000000000000000 888888 7 11 4 66 9 4 22 88 4444 888 6 9 0 999 6 4 444444444 0 33 11 9 4 9 88 44444444444444 11 88 6 7 9 55 0000 0 4 99 4 111111111 88888888 2222222 0 0 7 4 7777777 4 999999 666 77 7 3 7 77 7 2 22 33 22 33333333333 88 7 3 7 7 7 888 7 0 8888888 6 4 66 2 0000 0 5 5555555 5 0 0 2 88 2 0 2 0 00000 2 0 0 2
consensus : TGG-AATAGTGTGTCT--CTAAGTGTATGCAAGGTGGTAACTCAT-TTGGACTC-CAATNACTATTGTCAGT-ATTTTAATGAGACGGTA-CAATTTGTCCGTTAA--GAGAACTAAGATTTA-TTTCAGTCCCAGTATACACGCAGACTCTT----------CACGTTGG-G----ATGTAT-------------T---A---TGTT-GGTGCTGTATA-CACACTGCCTTCCCGTTT-C-GTACTTGTATCNCGT--G----TNNA-------CGAGTAA---------------TCG--------ACAAGG------AGGTCTAAG--TGGT-CGCGAAGAGTTGT-TAAATCTTCAAATT----T---TNTCTGCGTCGNTGGGGATTATTTTTNTGGTNGAT-CATT------GG-CANACGTA--TCAAAATT-ACTGGA-TCA-A------------GA--AA-TANTTCGAAGGTGGNT--G-CNA-TAAAA-GCAGA-ATT--G-G-A--ATCTATTTTTG-AATA-TTTTCAA-TTGA-TA-GTTT-TCGGTTTTAAAA-AATCTGGTT-TTTCGTTTCCTTCCTTGTATCTGCGTG-ATAGTGGTTGTACGAT-GTAATNATCATGCTAT-TATAT--CACGGACA--AAATTACCGG--TCCT------GT-T-TTTGCT-TCATTGTCCA-TA-GAC-A-CGATGATAGA-GAACAACGCGTAATACTGACTTCTAATTCATACAACATGCATA-TTGTATTT-AAAGCACTGCCT---A-C-CGGTGTTTTGTG-AAAT-TAACCAGACATAC--AATT-AACAAAGTGGGNGTTTCCG-GGGCCTTGCCTTTT-ATC-CAAGTCCAGTATG
Reference ( family-110 ) : TGG-AATAGTGTGTCT--CTAAGTGTATGCAAGGTGGTAACTCAT-TTGGACTC-CAATNACTATTGTCAGT-ATTTTAATGAGACGGTA-CAATTTGTCCGTTAA--GAGAACTAAGATTTA-TTTCAGTCCCAGTATACACGCAGACTCTT----------CACGTTGG-G----ATGTAT-------------T---A---TGTT-GGTGCTGTATA-CACACTGCCTTCCCGTTT-C-GTACTTGTATCNCGT--G----TNNA-------CGAGTAA---------------TCG--------ACAAGG------AGGTCTAAG--TGGT-CGCGAAGAGTTGT-TAAATCTTCAAATT----T---TNTCTGCGTCGNTGGGGATTATTTTTNTGGTNGAT-CATT------GG-CANACGTA--TCAAAATT-ACTGGA-TCA-A------------GA--AA-TANTTCGAAGGTGGNT--G-CNA-TAAAA-GCAGA-ATT--G-G-A--ATCTATTTTTG-AATA-TTTTCAA-TTGA-TA-GTTT-TCGGTTTTAAAA-AATCTGGTT-TTTCGTTTCCTTCCTTGTATCTGCGTG-ATAGTGGTTGTACGAT-GTAATNATCATGCTAT-TATAT--CACGGACA--AAATTACCGG--TCCT------GT-T-TTTGCT-TCATTGTCCA-TA-GAC-A-CGATGATAGA-GAACAACGCGTAATACTGACTTCTAATTCATACAACATGCATA-TTGTATTT-AAAGCACTGCCT---A-C-CGGTGTTTTGTG-AAAT-TAACCAGACATAC--AATT-AACAAAGTGGGNGTTTCCG-GGGCCTTGCCTTTT-ATC-CAAGTCCAGTATG
gi|1 : TTTCCTT---TAAATCTG--TG-ATAGTGGTTCCACG-T-GTAATCAATATGTTAT-TATAT--CATGGACA--AAATTCCCGA--TTCT------GTGT-TTTGCT-TCATTGTCCAATAAGACCA-C-ATGATAGATGAAAGAAAC-TA-TACTGACTTCTAATTCATAAAGCATAC----TTGTATTT-AAAGCACTGTCT---AACGCGGTGTTTTGTG-AAAT-TA-CCAGACATAC--AATTAAACAAAGTTGGAGTTTCCGTTACCCTTGCTTTTG-ATG-CAAGTCCAGTAT
gi|10 : TT-AGTACTGTATA-TACAATGCATTTTCGTTT-T-GTACTT-TATCACGT--G------------------GTAA---------------TTG--------ACAAaacgtatgataaacccgagcattgtcatgcttcaggcattactgaataaatatttagttttttcgaaatgtgtcactttactggtcaattcactgaaaattccatctttatcataatctctttttttgcaataaaagatggggaaaggtgacaaaaatcaaattcgaaaaggtgaaagttggccattcggacacatttttttttagccaaaaggtggtataaaagttgaacaattgggcagaaaaaaggtacactgaagtgatttaggtacagaaagatcacaaaagattatattttatatattgaatgaacagaagaagaaaggtgatatttttttctgctttgaaggtgtaaatgttagccacaatagacaccttcttctaacataaggtgtgacacaatttgaacttttggcataaaaaagtggtatgaacaagaattgttttaaatggtatcaaggtcaaaaggtaatcttttaaaattctgaaaagaatggagaaaaggcgacatttttcatcaaacaagaaaggtgtaaaagtggacatttgaagaccttgtttatctaccaaaaagggtccctttgtttccttaaaaatacaaaaggtgcacaaaaggtgtaaaagatcttaaaaggtgtctttttaatatctttttggaagta
gi|10 : atttcagtaccaccattatacgcaaatttccagttacatttcatgtctttgctgtatgcaggattttccgatacgttGTCTAAG--TGGT-TGCTAAGAAATGT-TAAACATT--ACTT----T---TCTCTGCGTCGATGAGG-TTAATTTGATGATACAT-CATT------AG-CATATGTA--TCAAAACT-ACTGGGGTCAGA------------GG--AA--ATTTCGA-GGTGGGT--GACTA-TAAAA-ACAGA-A-----------ATTTATATCT-------TTTTTAA---------GTTT-TTGGTTTCA------TTTTGTT-TTCAGTT-CCTTCCTTGTtaggtatcaatatgaaatggcgaagaaaactttgtgctaaatgtctaagtggttgctaagaaatgttaaacattacttttctctgcgtcgatgaggttaatttgatgatacatcattagcatatgtatcaaaactactggggtcagaggaaatttcgaggtgggtgactataaaaacagaaatttatatcttttttaagtttttggtttcattttgttttcagttccttccttgt
gi|11 : atttcagtaccaccattatacgcaaatttccagttacatttcatgtctttgctgtatgcaggattttccgatacgttttagtactgtatatacaatgcattttcgttttgtactttatcacgtggtaattgacaataggtatcaatatgaaatggcgaagaaaactttgtgctaaatTTCCTTGTATTT-CGTG-GTAGTGGATGT-CAAT-GTAATGATCATGTTGT-TATAT--CACAGACATAGAATTACCGG--TCCT------GT-TATTT--T-CCATTG-CCA-TA-GAC-AACAATGGTAGA-GAACAATGCGTAATACTGAC-TCTAATTCATTCAACAATCATA-CTGTATTT-AAA-CATTGCATTGAA-T-CGGT-CTTTGTGTAAATGTAACCAAACATACATAATT-AACAAGG-GGGTGTTTCCG-AAG--TTGCCGTTT-AACTCAGACTCAGTA
gi|12 : T-TTGGATCC-CAATCAC-ATGAT-AGTGATTTTAATAAGACGATA-CAATTTGTCCATTAA--GAGAAGTAAGATTCA-TTTCAA--CCA-TATACACTCA-ACTCTT----------GCTGTTAG-GTTATATATAT-------------T---A---TGT--GGTGCTGTATA-CACATT--CTTCCTGTTT-C-ATACTTGTATCGTGT--A----TAAA-------C-AGCAA---------------TCA--------ACAAGG------AGGTCTAAG--TGGT-CGTGAAGTGTTCT-TAAATCTTCAAATT----T---TATCTGCGTAGCTGTGAATTATTTTTCTGGTTGAT-CATT------GT-CAAATATA--TCAGAATT-ACGGGA-TCA-G------------AA--AA-TAGTTTGAAagataatctcgaacatccagttcagtattattgataaaaatcattttggaatgtgtca
gi|13 : cGTTGG-G----TTATATA------------T---A---TGTTTGGTGCTGTATA-CACACTGCCGTCTTGTTTCC-ATAC-TG-ATCTCGT--G----TATAGTAATATTGAGTAG---------------ATG--------ACAAAG------TGG-----G--TGGT------GGAGTTTT-TAAATAGTTAAATT----TTAATTTCTA-GCTGGT-GGAATT-TTTTTCTGG--GAT-TGTTTTTTTCG---ATGCGTA--TCGATATTAACTGTA-ACA-ATACATAAATTATGAAGAA-TAAATGCAAGGTGGTT----CGATTAAAATACGGA-ATT--G-G-AAGATATATTTTTGAAATATTTTTCAA-T--A-TA-GTTT-ttggt
gi|14 : -CGA-TAAAA-GCAGA-ATT--G-G-A--GACCGATTTTG-AATA-TTTTCAA-TTGAATA-GTTC-TAAA----AAAA-AATCTGGTT-TT-CGTTTTCGTCCTTGTATCTGTGTG-ATAGTGGTTGTACAAT-AAAATG-TAATGCTAT-TAT-TCACACGGACA--AAATCA-CGGATTCCTGGTTTGGT-T-TTTTTT-TCATTTTCTA-TA-AAC-A-CTATGATAAT-GAACAAC-C---ATACTGGCTTCTA
gi|2 : TTTATACA-CATGCATACTTGTATTT-AAAGCACTGCCT---A-C-CGGTGTTTTGTG-AAAT-TAACCAGATATAC--AATT-AGCAAAGTGGGAGTTTACA-GGGCCTTGCATTTTGATC-CAAGTCCAGTATG
gi|3 : TGG-AATAGTGTGTCT--CTAAGTGTATG-AAGGTGGTAACTCAT-TTGGACTC-CAATAACTATTGTCAGT-ATTTTAATGAGACAG----AATTT-TCCGTTAA--GAGTTCTAAGATTTA-TTTCAGTCCCAGTATACACGCAGACTCTT----------CACGTTGG-A----ATGTAT-------------T---A---TATT-GGTGATGTATA-CACACTCTCTTCCTGTTT-C-ATACTTGTTTCTCGT--G----TTCA-------CGAGTAA---------------TCG--------ACAAGG------AGGTTTAAG--TGAT-CGCAAAGGGTTGT-TCAATCTTCAAATT----T---TATCTGCGTAGTTGGGGATTATTTTTTAGATTGAT-CATT------GA-CAAAGATA--TCAGAATT-ACTTGT-TCA-A------------GA--AA-TATTTTGAAAGTGGCT--G-CCA-TTAAA-GAAGA-ATT--G-G-A--ATCTATTTTTG-AATG-TTTTCAAGTTGA-TA-GTTT-TTTGTTTTAAAA-AATCTGGTT-TTTTGTTTCCTTCCTTGC-TCTGCATG-ATAGTGGTTGTACGAT-GTAATT-TCATGCTA---------CACGGACA--AAATTCCCGT--TCCT------GT-T-TTTGCT-TCATTGTCCA-TA-GAC-A-CGATGATAGA-GAAGAAC---T-ATACTGACTTCTAATTCATAC-ACATGCACA-TTGTATTTAAAAACACTGCCT---A-C-CGGTGTTTTGTG-AAAT-TAACCAGACATAT--AA-T-AACAAAGGGGGTGTTTCCG-GGATCTTGTCTTTT-ATC-CAAGACCAGTATGataaaccgaaaannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnactcttttttgcaatggaaagatggaaaaaggtgacatatcaaattcgagagatgtaaaggtttgccattttgacacctttttctaccaaagggtgtaccaaaagttgaacatttggcatagaaaaggtacaatgaagatgatttttatgatattaaaggtacaaaaaggtcacaacagatcatttttatatattgcatgaaaagataaagaaagtgacattatctgcgttaaaaggtgtaaaagttggccacatgaacatcttttttctaacaaaaggtgtacacaatttgaaattttggcaaaaaaaaggtacaacgaagattattttaatggtatcaaaggtcaaaaaggtaatcatttatatactgaaaagatggagaaaggtgacattttatcaaatttgaaaggtgtaaaagtgaaccatttgaaggtgttttatctaccaaaaggtgtcctttgtttccttaaaatacaaaaggtgcacaaaaggtatagagagatatttagaaggtggtctttttatatcttttagagtacacagaagaacatttttttcgtgcagttagtataatgt
gi|4 : TGG-AAAAATGTGTCTAACAAAATATATTTAAGATAATAAA-CACCTTCGACTCACAAGCA-TATTGACGGT-GATTTGTTTAAACGATATCAATTTGTCCA--AATGGAGAAACAAGACTTAATTTCAGTCCCACCATACACGCAGACTTTCGAATTAAATGCATGATGGTG----CTGTATACAGGATTTCCGTC---AAATTGTT-GGTACAGTAAAATACACTGCCTTCC--------GT-----TATCCTTT--G----TTAA-------CG-TTAA----------------CG--------GCAAGG------AGATTTGAG--TGGT-CACGAAGA-TTGTAGAAGT-----GATTGCTGT---TCTCTGCGTCGATGAGAATTATTCTCA-GGTGAAT-GACA------GG-CAAACTTA--TCAAA-TT-ACTACA-TAG-G------------GA--GA--AATTTGAAGTTG-AT--A-GGA-TAAAA--CAGA-ATT--TTG-A--ATTTATTTTAA-AAT------CAA-------A-ATTT-TCAGTTTAAAAATAATGTG-----TTCATTTC-TTCCTTGTATCTGCGTGAAGAGTGGTGATACGATAGT--TTTCCAAGCTATATTTAT--C-TAGACA--AAATCACCGG--TCCT------G------TGCTCTCAATGTCCA-TA-GAC-A-TGATAATATA-AAATAA
gi|5 : AGAACTAAGATT-A-TATCAGTCCCCGTAGACACGCA-AC-CTT----------CATGTTCG-G----GTGTAT-------------TTATA---TGGT-GATG--GTATA-CACATTTTCTTGCCCTGT-CAGTGCTTG-AT-ACGTCTG----TAAA--------GAGCAAA--------------TCG--------ACAAGG------AGAT--AAG--TGGT-CA-AAGGAGTTGT-TCAATCTTCAAATT----T------ATGCGTAATTGGGGATTATTTTTTTAGTTGAT-CAAT------GGACACAGCTA--TCAAA--T-ACTGGT-TCA-A------------GA--AAATAATTGAAAAGTG-CT--G-CGA-TAAAA-GAAGA-ATTTGG-A-A--ATCTATTTTTG-AATA-TTTTCAAGTTGA-TAAGTTTCTCG--TTTAAAA-AATCTGTTTGTTTCTTTTCTTTCCTTGTATTT-CGTG-GTAGTGGATGT-CAAT-GTAATGATCATGTTGT-TATAT--CACAGACATAGAATTACCGG--TCCT------GT-TATTT--T-CCATTG-CCA-TA-GAC-AACAATGGTAGA-GAACAATGCGTAATACTGAC-TCTAATTCATTCAACacatattgtctacttttt
gi|7 : TGGCAATAGTGTGTCT--CTAAGTGTATGCAAGGTGGTAACTCAT-TTGGACTC-CAATAACTATTGTCAGTTATTTTAATGAGACAG----AATTTATCCGTTAA--GAGTTCTAAGATTTA-TTTCAGTCCCAGTATACACGCAGACTCTT----------CACGTTGG-A----ATGTAT-------------T---A---TATT-GGTGATGTATA-CACACTCTCTTCCTGTTT-C-ATACTTGTTTCTCGT--G----TTCA-------CGAGTAA---------------TCG--------ACAAGG------AGGTTTAAG--TGAT-CGCAAAGGGTTGT-TCAATCTTCAAATT----T---TATCTGCGTAGTTGGGGATTATTTTTTAGATTGAT-CATT------GA-CAAAGATA--TCAGAATT-ACTTGT-TCA-A------------GA--AA-TATTTTGAAAGTGGCT--G-CCA-TAAAA-GAAGA-ATT--G-GAA--ATCTATTTT
gi|8 : -G----ATACAT-------------T-------T-TT-AGTGCTGTATA-TACAATGCCTTTCCGTTT---GTATCTATATCACGT--GGTAATCGA-------CAAGTAGGTTAAAGACATAAATTCGTGAAGAAAACAATGCGTTAAAAGTCTAAACCTGGTTCG-GAAGACATGT-TAAAACATTTACTT----T---TTCCTGCGTCGATGAGGATTAATTTGATGATGGATCCATT------AG-CATATGTATTTCAAAACT-ACT-GA-TCAGA------------GG--AA-T--TTCG-AGGTGGGTGAG-CTA-TAAAA--CAGATGTT--T-A-G--ATCT----------CA-TCTTTAA-------A-GTTT-TTGGTTTT------ATTTCG-T-ATTAATTTCCTTCCTTGTga
gi|9 : ttcagtaccaccatattacgccaaacttccagtatgtctcatgtgtgttcgtatgcaggaatcttac-G----ATACAT-------------T-------T-TT-AGTGCTGTATA-TACAATGCCTTTCCGTTT-T-GTACTTATATCACGT--GGTAATCGA-------CAAGTAGGTATAAACATAAAT-TCGTGAAGAAAACAATGCGTTAAAAGTCTAAC--TGGT-TGCGAAGACATGT-TAAAACATTTACTT----T---TTCCTGCGTCGATGAGGATTAATTTGATGATGGAT-CATT------AG-CATATGTA--TCAAAACT-ACTGGA-TCAGA------------GG--GA--ATTTCGA-GGTGGGT--GACTA-TAAAA-ACAGA-ATT--T-T-AG-ATCTATTTT-------------------A--A-GTTT-TTGGTTTT------ATTTCG-T-ATTAATTTCCTTCCTTGT
blockSeqs : C AA T T C A A CT C T TATC G T TG TT T A G G GAATTAAATG T . ACAGGATTTCCGTCAAAT G T C A T G T CC GT G CT GTAATCGACAAGTAGGTTAAAGACATAAATTCGTGAAGAAA CGTTAA C CC T TG G A CT CA GCTG TAA A A C TCT T C TTTTTCG A TA TT A A G A ATACATAAATTAT AG AT G T A GT GAG G T TA T GGAAG TGAAATAT TTGAAT A C A T AAAAATA GTTTGT TTG GT A A A GA A A CA TA AT GGTTTGGTT TT C T . . . ACA . C TGCGTAA T T AA ATAC A G TGAAT G T G A AT T . T T GGGC G T C
blockSeqs : . . C . . . C CT C . . A T . AA T . C G . . . TTATA A . C . C C T CA GT T . GTAATCGACAAGTAGGTATAAACATAAATTCGTGAAGAAA CGTTAA T . . CA G . AG TA . . T T G TCT T . GGA T CG . A . G A GA . T A G A GC GA G . G . TGGAA TGAATA GTTGAT . . T T TAAAAA GGTTT TCA GC . A . TT . A . TA . GTTA GC . T . . . ACA . C TGCGTAA T A AA ATA . A AC G . . A . T . G A GGAT . . T
blockSeqs : . . A T C . . . . . AA T . G G . . . ATA G . A . C G T C GT T . TATAGTAATATTGAGTAGATG . T . . CG G . CT CA . . A A T TTA G . GT A GA . A . T T GA . T T T A GC G C . G . TTGA TGAATG GTTGAT . . C T TAAAAA GGTTT TCT GC . A . GA . A . . . GTTA GC . T . . . CT . G CCA . A A ACA . . AC . . . A . . . . T AAG . . A
blockSeqs : TT . . G . . . . TA G . C . C T C C AT C . TTCACGAGTAATCG . T . . CA G . CT CA . . C C A TTT T . GA A CT . A . A A G . T A T A GG A G . G . GGAA TGAATA TAT . . C T AAAAA CGTA TAA C . . . G . . . . . GTT . . . . . . CG . T CTA . T A
blockSeqs : . . TA A . A . T C T C AT A . TAAAGAGCAAATCG . C . . CG G . CT CA . . A A T TTA T . GG C GC . A . G T A . T A G A GG G G . G . TTAG AAAAT A . . T . T CGTA TAA C . . . T . . . . . G . . . . . . TG . C
blockSeqs : . . T . . C . C G C T G T . TTCACGAGTAATCG . C . . A C . CA TT . . T A T GAT G . GA A GA . A . T T G . T T T A A G C . A . GGA CA . . . T . T G CG
blockSeqs : . . T . . C . A G C . T A . TAAACAGCAATCA . . . . G C . CA TT . . T C A GAT G . AG T TG . . . G A A . . T C A C . T . . . GGA . . . .
blockSeqs : . . . A . . . G A . TTAACGTTAACG . . . . . . . . . . . C A CA . . AG T TG . . . . A A . . . C . T . . . TAG
blockSeqCons : **** TA******************* GT TCGACGAGTAGTCG********************************** CA A* A************* T* G*** GGAA***** CGAATA** TAT**** TAAAAA* GC CG* CCTA*** A*
originalCons : TGG-AATAGTGTGTCT--CTAAGTGTATGCAAGGTGGTAACTCAT-TTGGACTC-CAATNACTATTGTCAGT-ATTTTAATGAGACGGTA-CAATTTGTCCGTTAA--GAGAACTAAGATTTA-TTTCAGTCCCAGTATACACGCAGACTCTT----------CACGTTGG-G----ATGTAT-------------T---A---TGTT-GGTGCTGTATA-CACACTGCCTTCCCGTTT-C-GTACTTGTATCNCGT--G----TNNA-------CGAGTAA---------------TCG--------ACAAGG------AGGTCTAAG--TGGT-CGCGAAGAGTTGT-TAAATCTTCAAATT----T---TNTCTGCGTCGNTGGGGATTATTTTTNTGGTNGAT-CATT------GG-CANACGTA--TCAAAATT-ACTGGA-TCA-A------------GA--AA-TANTTCGAAGGTGGNT--G-CNA-TAAAA-GCAGA-ATT--G-G-A--ATCTATTTTTG-AATA-TTTTCAA-TTGA-TA-GTTT-TCGGTTTTAAAA-AATCTGGTT-TTTCGTTTCCTTCCTTGTATCTGCGTG-ATAGTGGTTGTACGAT-GTAATNATCATGCTAT-TATAT--CACGGACA--AAATTACCGG--TCCT------GT-T-TTTGCT-TCATTGTCCA-TA-GAC-A-CGATGATAGA-GAACAACGCGTAATACTGACTTCTAATTCATACAACATGCATA-TTGTATTT-AAAGCACTGCCT---A-C-CGGTGTTTTGTG-AAAT-TAACCAGACATAC--AATT-AACAAAGTGGGNGTTTCCG-GGGCCTTGCCTTTT-ATC-CAAGTCCAGTATG
finalCons : TGG-AATAGTGTGTCT--CTAAGTGTATGCAAGGTGGTAACTCAT-TTGGACTC-CAATNACTATTGTCAGT-ATTTTAATGAGACGGTA-CAATTTGTCCGTTAA--GAGAACTAAGATTTA-TTTCAGTCCCAGTATACACGCAGACTCTT----------CACGTTGG-G----ATGTATTA-------------------TGTT-GGTGCTGTATA-CACACTGCCTTCCCGTTT-C-GTACTTGTATCNCGT--GTCGACGAGTAGTCG----------------------------------ACAAGG------AGGTCTAAG--TGGT-CGCGAAGAGTTGT-TAAATCTTCAAATT----T---TNTCTGCGTCGNTGGGGATTATTTTTNTGGTNGAT-CATT------GG-CANACGTA--TCAAAATT-ACTGGA-TCAA-------------GA--AAT-ANTTCGAAGGTGGNTG---CNA-TAAAA-GCAGA-ATTGGAA-----ATCTATTTTCGAATA--TTTTCAATAT----A-GTTT-TCGGTTTTAAAAA-ATCTGGTT-TTTCGTTTCCTTCCTTGTATCTGCGTG-ATAGTGGTTGTACGAT-GTAATNATCATGCTAT-TATAT--CACGGACA--AAATTACCGG--TCCT------GT-T-TTTGCT-TCATTGTCCA-TA-GAC-ACG-ATGATAGA-GAACAACCTA---TACTGACTTCTAATTCATACA-CATGCATA-TTGTATTT-AAAGCACTGCCT---A-C-CGGTGTTTTGTG-AAAT-TAACCAGACATAC--AATT-AACAAAGTGGGNGTTTCCG-GGGCCTTGCCTTTT-ATC-CAAGTCCAGTATG
3 sequences could not be aligned to this reference sequence:
Unaligned ( gi|6 ): TTTTTTTTTGCAATGGAAATATGGAGAAGGTGACATATCAAATTCGAAAGTTGACTATTCGGACACCTATTTCTAACCAAAAGTTGTAAAAAAGTTGAACATTTGGCATAGAAAGGTACAATGATATGATATTTATGAAATTAAAGAAATATCACAAAATCCTTTTATATATTGAATGAAAAGATAAAGAAAGGTGACATTATCTGCGTTGAAAGGCGAAAATGTTGGTCACAAGGACACCTTTTATCTAACAAAGGGTGTACACACTTTTGGCATAAAAGGTACAATGAGGATTATTATAATGGTATCAAAGGTCAAAAATGTAATCTTTTATATGCTGAAATGGAAAAAGGTGACATTTTATCAAATTTAAAAGTGTAAAAGTGGACCATTTGAAGACTTTTTTATCTACCAAA
Unaligned ( gi|15 ): CTTTTGTGCCTGCAATGGAAATATGGAGAAGGTGACATATCAAATTCGAAAGTTGACTATTCGGACACCTATTTCTACCAAAAGTTGTAAAAAAGTTGAACATTTGGCATAGAAAAGGTACAATGAATATGATATTTATGAAATTAAAGAA
Unaligned ( gi|16 ): CGACATTTAATCAAAATTATGGAAAGGTTAAAAGTGGACTATTGAAGACTTTTTAATCTACCAAACAG
Alignments
lowQualScore : 1 11 1 1 1 2 3333 11 1 3333333333 1111 444444444444444444444 111 999999999999999999999999999999999999999999999999 222222 111111111 33333333333333 1111 11 666666666666666666666666666 1111111 111111 11 11 22222222222 11 1 444444 1 2 1 222 1 1 1 11 1 11111 1 1
lowQualScore : 3 88 2 7 0 0 1 55 2 0 0 1111 6 3 33 22 3 8 0 5 0 0 5555555555 5 0000 666666666666666666666 6 4 1 4 1 3 2 000 0 33 1 66 111111111111111111111111111111111111111111111111 888888 3 66 4 66 2 4 33 55 9999 777 2 2 1 333 2 4 444444444 1 66 66 1 4 2 55 00000000000000 6666 7 2 2 1 1 4444 1 4 00 4 66666 333333333333333333333333333 5 2 1 9999999 0 111111 333 77 6 7 6 22 6 3 99 88 99 33333333333 11 6 7 6 6 6 3 7 99 1 444444 1 1 1 8 2 3 0 0 6 777 0 2 0 0 3 33 3 0 9 1 55555 0 0 0 1
lowQualScore : . .. . . . . . .. . . . .... . . .. .. . . . . . . .......... . .... ..................... . . . . . . . ... . .. . .. ................................................ ...... . .. . .. . . .. .. .... ... . . . ... . . ......... . .. .. . . . .. .............. .... . . . . . .... . . .. . ..... ........................... . . . ....... . ...... ... .. . . . .. . . .. .. .. ........... .. . . . . . . . .. . ...... . . . . . . . . . ... . . . . . .. . . . . ..... . . . .
lowQualScore : 3 33 0 3 0 0 0 88 5 0 2 0000 5 2 88 88 8 0 8 0 0 8 0000000000 0 6666 111111111111111111111 5 4 1 4 9 9 7 888 8 88 0 11 444444444444444444444444444444444444444444444444 888888 7 11 4 66 9 4 22 88 4444 888 6 9 0 999 6 4 444444444 0 33 11 9 4 9 88 44444444444444 6666 3 6 7 9 0 0000 0 4 99 4 11111 000000000000000000000000000 0 7 4 7777777 4 999999 666 77 7 3 7 77 7 2 22 33 22 33333333333 88 7 3 7 7 7 3 8 22 0 000000 7 3 4 0 5 5 0 0 5 555 0 5 0 0 2 88 2 0 2 0 00000 2 0 0 2
consensus : TGG-AATAGTGTGTCT--CTAAGTGTATGCAAGGTGGTAACTCAT-TTGGACTC-CAATNACTATTGTCAGT-ATTTTAATGAGACGGTA-CAATTTGTCCGTTAA--GAGAACTAAGATTTA-TTTCAGTCCCAGTATACACGCAGACTCTT----------CACGTTGG-G----ATGTAT-------------T---A---TGTT-GGTGCTGTATA-CACACTGCCTTCCCGTTT-C-GTACTTGTATCNCGT--G----TNNA-------CGAGTAA---------------TCG--------ACAAGG------AGGTCTAAG--TGGT-CGCGAAGAGTTGT-TAAATCTTCAAATT----T---TNTCTGCGTCGNTGGGGATTATTTTTNTGGTNGAT-CATT------GG-CANACGTA--TCAAAATT-ACTGGA-TCA-A------------G-A--AATANTTCGAAGGTGGNT--G-CNA-TAAAA-GCAGAA-TTGGAA-ATCTATTTT-G-AATA-TTTTCA-----A-T---ATAGTTT-TCGGTTTTAAAA-AATCTGGTT-TTTCGTTTCCTTCCTTGTATCTGCGTG-ATAGTGGTTGTACGAT-GTAATNATCATGCTAT-TATAT--CACGGAC--AAAATTACCGG--TCCT------GT-T-TTTGCT-TCATTGTCC-AT-AGA-C-ACGATGATAGA--GAACAA--CCT-ATACTGACTTCTAATTCATAC-ACATGCATACTTGTATTT-AAAGCACTGCCT---AC-CGGTGTTTTGTG-AAAT-TAACCAGACATAC--AATT-AACAAAGTGGGNGTTTCCG-GGGCCTTGCCTTTT-ATC-CAAGTCCAGTATG
Reference ( family-110 ) : TGG-AATAGTGTGTCT--CTAAGTGTATGCAAGGTGGTAACTCAT-TTGGACTC-CAATNACTATTGTCAGT-ATTTTAATGAGACGGTA-CAATTTGTCCGTTAA--GAGAACTAAGATTTA-TTTCAGTCCCAGTATACACGCAGACTCTT----------CACGTTGG-G----ATGTAT-------------T---A---TGTT-GGTGCTGTATA-CACACTGCCTTCCCGTTT-C-GTACTTGTATCNCGT--G----TCGA-------CGAGTAG---------------TCG--------ACAAGG------AGGTCTAAG--TGGT-CGCGAAGAGTTGT-TAAATCTTCAAATT----T---TNTCTGCGTCGNTGGGGATTATTTTTNTGGTNGAT-CATT------GG-CANACGTA--TCAAAATT-ACTGGA-TCA-A------------G-A--AATANTTCGAAGGTGGNT--G-CNA-TAAAA-GCAGAA-TTGGAA-ATCTATTTTCG-AATA-TTTTCA-----A-T---ATAGTTT-TCGGTTTTAAAA-AATCTGGTT-TTTCGTTTCCTTCCTTGTATCTGCGTG-ATAGTGGTTGTACGAT-GTAATNATCATGCTAT-TATAT--CACGGAC--AAAATTACCGG--TCCT------GT-T-TTTGCT-TCATTGTCC-AT-AGA-C-ACGATGATAGA--GAACAA--CCT-ATACTGACTTCTAATTCATAC-ACATGCATA-TTGTATTT-AAAGCACTGCCT---AC-CGGTGTTTTGTG-AAAT-TAACCAGACATAC--AATT-AACAAAGTGGGNGTTTCCG-GGGCCTTGCCTTTT-ATC-CAAGTCCAGTATG
gi|1 : TTTCCTT---TAAATCTG--TG-ATAGTGGTTCCACG-T-GTAATCAATATGTTAT-TATAT--CATGGAC--AAAATTCCCGA--TTCT------GTGT-TTTGCT-TCATTGTCCAATAAGACC-AC-ATGATAGATGAAAGAA--ACT-ATACTGACTTCTAATTCATAA-A---GCATACTTGTATTT-AAAGCACTGTCTA--ACGCGGTGTTTTGTG-AAAT-T-ACCAGACATAC--AATTAAACAAAGTTGGAGTTTCCGTTACCCTTGCTTTTG-ATG-CAAGTCCAGTAT
gi|10 : TT-AGTACTGTATA-TACAATGCATTTTCGTTT-T-GTACTT-TATCACGT--G------------------GTAA---------------TTG--------ACAAaacgtatgataaacccgagcattgtcatgcttcaggcattactgaataaatatttagttttttcgaaatgtgtcactttactggtcaattcactgaaaattccatctttatcataatctctttttttgcaataaaagatggggaaaggtgacaaaaatcaaattcgaaaaggtgaaagttggccattcggacacatttttttttagccaaaaggtggtataaaagttgaacaattgggcagaaaaaaggtacactgaagtgatttaggtacagaaagatcacaaaagattatattttatatattgaatgaacagaagaagaaaggtgatatttttttctgctttgaaggtgtaaatgttagccacaatagacaccttcttctaacataaggtgtgacacaatttgaacttttggcataaaaaagtggtatgaacaagaattgttttaaatggtatcaaggtcaaaaggtaatcttttaaaattctgaaaagaatggagaaaaggcgacatttttcatcaaacaagaaaggtgtaaaagtggacatttgaagaccttgtttatctaccaaaaagggtccctttgtttccttaaaaatacaaaaggtgcacaaaaggtgtaaaagatcttaaaaggtgtctttttaatatctttttggaagta
gi|10 : atttcagtaccaccattatacgcaaatttccagttacatttcatgtctttgctgtatgcaggattttccgatacgttGTCTAAG--TGGT-TGCTAAGAAATGT-TAAACATT--ACTT----T---TCTCTGCGTCGATGAGG-TTAATTTGATGATACAT-CATT------AG-CATATGTA--TCAAAACT-ACTGGGGTCAGA------------G-G--AA-ATTTCGA-GGTGGGT--GACTA-TAAAA-ACAGAA--------ATTTAT-------ATC-TTTTT--------T---A-AGTTT-TTGGTTTCA------TTTTGTT-TTCAGTT-CCTTCCTTGTtaggtatcaatatgaaatggcgaagaaaactttgtgctaaatgtctaagtggttgctaagaaatgttaaacattacttttctctgcgtcgatgaggttaatttgatgatacatcattagcatatgtatcaaaactactggggtcagaggaaatttcgaggtgggtgactataaaaacagaaatttatatcttttttaagtttttggtttcattttgttttcagttccttccttgt
gi|11 : atttcagtaccaccattatacgcaaatttccagttacatttcatgtctttgctgtatgcaggattttccgatacgttttagtactgtatatacaatgcattttcgttttgtactttatcacgtggtaattgacaataggtatcaatatgaaatggcgaagaaaactttgtgctaaatTTCCTTGTATTT-CGTG-GTAGTGGATGT-CAAT-GTAATGATCATGTTGT-TATAT--CACAGACATAGAATTACCGG--TCCT------GT-TATTT--T-CCATTG-CC-AT-AGA-CAACAATGGTAGA--GAACAATGCGTAATACTGAC-TCTAATTCATTCAACAATCATA-CTGTATTT-AAA-CATTGCATTGAAT-CGGT-CTTTGTGTAAATGTAACCAAACATACATAATT-AACAAGG-GGGTGTTTCCG-AAG--TTGCCGTTT-AACTCAGACTCAGTA
gi|12 : T-TTGGATCC-CAATCAC-ATGAT-AGTGATTTTAATAAGACGATA-CAATTTGTCCATTAA--GAGAAGTAAGATTCA-TTTCAA--CCA-TATACACTCA-ACTCTT----------GCTGTTAG-GTTATATATAT-------------T---A---TGT--GGTGCTGTATA-CACATT--CTTCCTGTTT-C-ATACTTGTATCGTGT--A----TAAA-------C-AGCAA---------------TCA--------ACAAGG------AGGTCTAAG--TGGT-CGTGAAGTGTTCT-TAAATCTTCAAATT----T---TATCTGCGTAGCTGTGAATTATTTTTCTGGTTGAT-CATT------GT-CAAATATA--TCAGAATT-ACGGGA-TCA-G------------A-A--AATAGTTTGAAagataatctcgaacatccagttcagtattattgataaaaatcattttggaatgtgtca
gi|13 : cGTTGG-G----TTATATA------------T---A---TGTTTGGTGCTGTATA-CACACTGCCGTCTTGTTTCC-ATAC-TG-ATCTCGT--G----TATAGTAATATTGAGTAG---------------ATG--------ACAAAG------TGG-----G--TGGT------GGAGTTTT-TAAATAGTTAAATT----TTAATTTCTA-GCTGGT-GGAATT-TTTTTCTGG--GAT-TGTTTTTTTCG---ATGCGTA--TCGATATTAACTGTA-ACA-ATACATAAATTATG-AAGAATAAATGCAAGGTGGTT----CGATTAAAATACGGAA-TTGGAAGATATATTTTTGAAATATTTTTCA-----A-T---ATAGTTT-ttggt
gi|14 : -CGA-TAAAA-GCAGAA-TTGGAG-ACCGATTTT-G-AATA-TTTTCA-----A-TTGAATAGTTC-TAAA----AAAA-AATCTGGTT-TT-CGTTTTCGTCCTTGTATCTGTGTG-ATAGTGGTTGTACAAT-AAAATG-TAATGCTAT-TAT-TCACACGGAC--AAAATCA-CGGATTCCTGGTTTGGT-T-TTTTTT-TCATTTTCT-AT-AAA-C-ACTATGATAAT--GAACAA--CC--ATACTGGCTTCTA
gi|2 : TTTATAC-ACATGCATACTTGTATTT-AAAGCACTGCCT---AC-CGGTGTTTTGTG-AAAT-TAACCAGATATAC--AATT-AGCAAAGTGGGAGTTTACA-GGGCCTTGCATTTTGATC-CAAGTCCAGTATG
gi|3 : TGG-AATAGTGTGTCT--CTAAGTGTATG-AAGGTGGTAACTCAT-TTGGACTC-CAATAACTATTGTCAGT-ATTTTAATGAGACAG----AATTT-TCCGTTAA--GAGTTCTAAGATTTA-TTTCAGTCCCAGTATACACGCAGACTCTT----------CACGTTGG-A----ATGTAT-------------T---A---TATT-GGTGATGTATA-CACACTCTCTTCCTGTTT-C-ATACTTGTTTCTCGT--G----TTCA-------CGAGTAA---------------TCG--------ACAAGG------AGGTTTAAG--TGAT-CGCAAAGGGTTGT-TCAATCTTCAAATT----T---TATCTGCGTAGTTGGGGATTATTTTTTAGATTGAT-CATT------GA-CAAAGATA--TCAGAATT-ACTTGT-TCA-A------------G-A--AATATTTTGAAAGTGGCT--G-CCA-TTAAA-GAAGAA-TTGG-A-ATCTATTTTTG-AATG-TTTTCA-----AGTTG-ATAGTTT-TTTGTTTTAAAA-AATCTGGTT-TTTTGTTTCCTTCCTTGC-TCTGCATG-ATAGTGGTTGTACGAT-GTAATT-TCATGCTA---------CACGGAC--AAAATTCCCGT--TCCT------GT-T-TTTGCT-TCATTGTCC-AT-AGA-C-ACGATGATAGA--GAAGAA---CT-ATACTGACTTCTAATTCATAC-ACATGCACA-TTGTATTTAAAAACACTGCCT---AC-CGGTGTTTTGTG-AAAT-TAACCAGACATAT--AA-T-AACAAAGGGGGTGTTTCCG-GGATCTTGTCTTTT-ATC-CAAGACCAGTATGataaaccgaaaannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnactcttttttgcaatggaaagatggaaaaaggtgacatatcaaattcgagagatgtaaaggtttgccattttgacacctttttctaccaaagggtgtaccaaaagttgaacatttggcatagaaaaggtacaatgaagatgatttttatgatattaaaggtacaaaaaggtcacaacagatcatttttatatattgcatgaaaagataaagaaagtgacattatctgcgttaaaaggtgtaaaagttggccacatgaacatcttttttctaacaaaaggtgtacacaatttgaaattttggcaaaaaaaaggtacaacgaagattattttaatggtatcaaaggtcaaaaaggtaatcatttatatactgaaaagatggagaaaggtgacattttatcaaatttgaaaggtgtaaaagtgaaccatttgaaggtgttttatctaccaaaaggtgtcctttgtttccttaaaatacaaaaggtgcacaaaaggtatagagagatatttagaaggtggtctttttatatcttttagagtacacagaagaacatttttttcgtgcagttagtataatgt
gi|4 : TGG-AAAAATGTGTCTAACAAAATATATTTAAGATAATAAA-CACCTTCGACTCACAAGCA-TATTGACGGT-GATTTGTTTAAACGATATCAATTTGTCCA--AATGGAGAAACAAGACTTAATTTCAGTCCCACCATACACGCAGACTTTCGAATTAAATGCATGATGGTG----CTGTATACAGGATTTCCGTC---AAATTGTT-GGTACAGTAAAATACACTGCCTTCC--------GT-----TATCCTTT--G----TTAA-------CG-TTAA----------------CG--------GCAAGG------AGATTTGAG--TGGT-CACGAAGA-TTGTAGAAGT-----GATTGCTGT---TCTCTGCGTCGATGAGAATTATTCTCA-GGTGAAT-GACA------GG-CAAACTTA--TCAAA-TT-ACTACA-TAG-G------------G-A--GA-AATTTGAAGTTG-AT--A-GGA-TAAAA--CAGAA-TTTTGA-ATTTATTTTAA-AAT------CA-----A-------AATTT-TCAGTTTAAAAATAATGTG-----TTCATTTC-TTCCTTGTATCTGCGTGAAGAGTGGTGATACGATAGT--TTTCCAAGCTATATTTAT--C-TAGAC--AAAATCACCGG--TCCT------G------TGCTCTCAATGTCC-AT-AGA-C-ATGATAATATA--AAATAA--AC--ATATTG---TCTACTT
gi|5 : AGAACTAAGATT-A-TATCAGTCCCCGTAGACACGCA-AC-CTT----------CATGTTCG-G----GTGTAT-------------TTATA---TGGT-GATG--GTATA-CACATTTTCTTGCCCTGT-CAGTGCTTG-AT-ACGTCTG----TAAA--------GAGCAAA--------------TCG--------ACAAGG------AGAT--AAG--TGGT-CA-AAGGAGTTGT-TCAATCTTCAAATT----T------ATGCGTAATTGGGGATTATTTTTTTAGTTGAT-CAAT------GGACACAGCTA--TCAAA--T-ACTGGT-TCA-A------------GAA--AATAATTGAAAAGT-GCT--G-CGA-TAAAA-GAAGAATTTGGAA-ATCTATTTTTG-AATA-TTTTCAAGTTGA-T---A-AGTTTCTCG--TTTAAAA-AATCTGTTTGTTTCTTTTCTTTCCTTGTATTT-CGTG-GTAGTGGATGT-CAAT-GTAATGATCATGTTGT-TATAT--CACAGACATAGAATTACCGG--TCCT------GT-TATTT--T-CCATTG-CC-AT-AGA-CAACAATGGTAGA--GAACAATGCGTAATACTGAC-TCTAATTCATTC-Attt
gi|7 : TGGCAATAGTGTGTCT--CTAAGTGTATGCAAGGTGGTAACTCAT-TTGGACTC-CAATAACTATTGTCAGTTATTTTAATGAGACAG----AATTTATCCGTTAA--GAGTTCTAAGATTTA-TTTCAGTCCCAGTATACACGCAGACTCTT----------CACGTTGG-A----ATGTAT-------------T---A---TATT-GGTGATGTATA-CACACTCTCTTCCTGTTT-C-ATACTTGTTTCTCGT--G----TTCA-------CGAGTAA---------------TCG--------ACAAGG------AGGTTTAAG--TGAT-CGCAAAGGGTTGT-TCAATCTTCAAATT----T---TATCTGCGTAGTTGGGGATTATTTTTTAGATTGAT-CATT------GA-CAAAGATA--TCAGAATT-ACTTGT-TCA-A------------G-A--AATATTTTGAAAGTGGCT--G-CCA-TAAAA-GAAGAA-TTGGAA-ATCTATTTTac
gi|8 : -G----ATACAT-------------T-------T-TT-AGTGCTGTATA-TACAATGCCTTTCCGTTT---GTATCTATATCACGT--GGTAATCGA-------CAAGTAGGTTAAAGACATAAATTCGTGAAGAAAACAATGCGTTAAAAGTCTAAACCTGGTTCG-GAAGACATGT-TAAAACATTTACTT----T---TTCCTGCGTCGATGAGGATTAATTTGATGATGGATCCATT------AG-CATATGTATTTCAAAACT-ACT-GA-TCAGA------------G-G--AAT--TTCG-AGGTGGGTGAG-CTA-TAAAA--CAGAT-GTTTAG-ATCT----------CA-TCTTTA-----A-------AGTTT-TTGGTTTT------ATTTCG-T-ATTAATTTCCTTCCTTGTga
gi|9 : ttcagtaccaccatattacgccaaacttccagtatgtctcatgtgtgttcgtatgcaggaatcttac-G----ATACAT-------------T-------T-TT-AGTGCTGTATA-TACAATGCCTTTCCGTTT-T-GTACTTATATCACGT--GGTAATCGA-------CAAGTAGGTATAAACATAAAT-TCGTGAAGAAAACAATGCGTTAAAAGTCTAAC--TGGT-TGCGAAGACATGT-TAAAACATTTACTT----T---TTCCTGCGTCGATGAGGATTAATTTGATGATGGAT-CATT------AG-CATATGTA--TCAAAACT-ACTGGA-TCAGA------------G-G--GA-ATTTCG-AGGTGGGT--GACTA-TAAAA-ACAGAA-TTTTAG-ATCTATTTT---A-----------------------AGTTT-TTGGTTTT------ATTTCG-T-ATTAATTTCCTTCCTTGT
3 sequences could not be aligned to this reference sequence:
Unaligned ( gi|6 ): TTTTTTTTTGCAATGGAAATATGGAGAAGGTGACATATCAAATTCGAAAGTTGACTATTCGGACACCTATTTCTAACCAAAAGTTGTAAAAAAGTTGAACATTTGGCATAGAAAGGTACAATGATATGATATTTATGAAATTAAAGAAATATCACAAAATCCTTTTATATATTGAATGAAAAGATAAAGAAAGGTGACATTATCTGCGTTGAAAGGCGAAAATGTTGGTCACAAGGACACCTTTTATCTAACAAAGGGTGTACACACTTTTGGCATAAAAGGTACAATGAGGATTATTATAATGGTATCAAAGGTCAAAAATGTAATCTTTTATATGCTGAAATGGAAAAAGGTGACATTTTATCAAATTTAAAAGTGTAAAAGTGGACCATTTGAAGACTTTTTTATCTACCAAA
Unaligned ( gi|15 ): CTTTTGTGCCTGCAATGGAAATATGGAGAAGGTGACATATCAAATTCGAAAGTTGACTATTCGGACACCTATTTCTACCAAAAGTTGTAAAAAAGTTGAACATTTGGCATAGAAAAGGTACAATGAATATGATATTTATGAAATTAAAGAA
Unaligned ( gi|16 ): CGACATTTAATCAAAATTATGGAAAGGTTAAAAGTGGACTATTGAAGACTTTTTAATCTACCAAACAG