lowQualScore : 11111111111111111111111111111111111 222222222222222222222222222222222 2222222222222
lowQualScore : 1 22 1 3333333 2222 11 1 2222 22222 1 11 33333 5555555 1 11 11 4444444 11 111 22222 222 11 1 11 1 444444444444 333333 1 1 6666666666666666666666666666666 2 666666666 555555 1 111 1 22222 1 22 11 1 44444444444444444444444444444444444 44444 222222 11 5555555555555555555555 2222 333 1 33333333 111 2 11111 1 222 222222 1 222 2222222 1 1 333 444 1 22 22 2222 222 1 1 11 11 1 1 1 1 22 1 1 22222 1 111 1 1 6666666666666666666666 11 1 1 222 333333333 11 2 1 2222 22222222 1 33333 1 1 1111111 222222222 11111 222222222 222222222222222222222222222222222 22 1 1 22 6666666666666666 222 22 8888888888 0000000000000 111 22 222 1 22 888888888888888888888 11 1 1111 333333333 1 1 1
lowQualScore : 5 33 1 0 444 6 0 9999999 1 8888 88 3 2222 6 55555 3 88 0 66666 1 1 0000000 3 3 88 0 44 0000000 6 22 444 55555 6 777 33 3 33 8 7 0 22 3 111111111111 1 888888 7 6 0 2 6 2 2222222222222222222222222222222 0 333333333 6 4 777777 6 7 3 777 0 0 55555 2 5 11 99 3 7 55555555555555555555555555555555555 11111 333333 6 88 2222222222222222222222 6 9999 555 3 11111111 7 666 2 0 44444 7 3 333 1 666666 3 333 2222222 3 6 3 1 333 888 3 00 3 7 6 00 6666 4 333 3 7 3 7 99 88 3 3 3 3 66 7 3 3 88888 7 3 999 3 5 9999999999999999999999 88 6 3 6 3 555 6 777777777 88 8 3 5555 6 88888888 3 22222 7 3 6666666 555555555 77 44444 222222222 333333333333333333333333333333333 44 3 22 7 6 6 3 3 00 2222222222222222 1 999 4 33 1 6666666666 3 7 0000000000000 999 33 999 6 2 00 7 222222222222222222222 9 2 7 11 55 0 4 1 7777 3 333333333 4 2 2 6 5 7 0 6 3 7 6 0 9
lowQualScore : . .. . . ... . . ....... . .... .. . .... . ..... . .. . ..... . . ....... . . .. . .. ....... . .. ... ..... . ... .. . .. . . . .. . ............ . ...... . . . . . . ............................... . ......... . . ...... . . . ... . . ..... . . .. .. . . ................................... ..... ...... . .. ...................... . .... ... . ........ . ... . . ..... . . ... . ...... . ... ....... . . . . ... ... . .. . . . .. .... . ... . . . . .. .. . . . . .. . . . ..... . . ... . . ...................... .. . . . . ... . ......... .. . . .... . ........ . ..... . . ....... ......... .. ..... ......... ................................. .. . .. . . . . . .. ................ . ... . .. . .......... . . ............. ... .. ... . . .. . ..................... . . . .. .. . . . .... . ......... . . . . . . . . . . . . .
lowQualScore : 0 00 0 2 222 5 0 0000000 0 3333 33 3 3333 0 33333 3 33 7 00000 0 0 7777777 3 7 33 7 00 0000000 7 55 000 00000 5 000 00 5 00 0 2 8 66 3 333333333333 0 333333 3 7 7 0 0 7 0000000000000000000000000000000 0 000000000 0 0 555555 0 3 3 555 0 8 00000 5 0 77 33 3 3 33333333333333333333333333333333333 77777 000000 7 33 0000000000000000000000 7 3333 777 3 33333333 3 777 5 0 00000 3 3 333 0 000000 3 333 0000000 3 7 3 0 777 333 3 77 7 3 0 00 3333 7 333 3 3 3 3 33 33 3 3 3 3 00 3 3 3 00000 0 3 000 3 7 7777777777777777777777 33 7 3 0 3 333 7 000000000 33 7 3 0000 7 77777777 3 77777 0 3 0000000 333333333 99 33333 999999999 000000000000000000000000000000000 77 0 55 0 7 0 3 3 00 7777777777777777 0 777 7 77 0 0000000000 7 3 0000000000000 333 77 000 0 3 77 3 222222222222222222222 0 2 8 00 88 0 0 2 0000 5 555555555 0 2 2 0 0 3 7 7 3 3 7 8 0
consensus : GTTGCGATTTTGTTTTNACATTTTCACATTTGACATTCAGTTCGGTACGTGNATATCA-ATTTT-CAN-CGATTCTT----GCC--AA-TA-ATGTTATT-AAC-TA-GACC--GCTTT-GG--ACATGGGCC------CGGA-ANGTAG--GTCTA-TT-A--AAGGAACTAGCCGCTAGG-CCTTANTTA-----CTGCCCTCNGAAT-CGCAGAATAAATTNTGAAAT-GTCTNAAGTTA-TAAAGAATATGT-AA----T-ACT---CGTATTA------ATTATTGATTTATTTATTGTCCTCGTTTCTTTCATTCCANTTTTCTTTCTCT-A-GATCC--CTAAATGTAGC---------TAGATTTTCAGAATAGTGTATTCATGATGTCGTCACATNTCCATTCNGACGTCATTGAATTTCAAAGTTATATCAATTATGA-CGTCATAG---CT-AAAGA-----ACTGGTTTTGTTTA-CTCCG-TCAT-TAGAATCATGTAGTCTTTT-----TCCACAT--------C-CACATA-TATTTAATTGAATTGAAA-AT--TGTA--CA--TAATGA--AGTGTAAGCC------CCTATGCA--------TAAGACA---AAAACTA--ATA-TTG-TAGG--CAAACTTG-C-CTNACAGTT-CAACATGTT-GTG---GTCGGCAAAGCTGTTT-ATATC-AA---GCTA-G--TT-ACATTTC-TTTCATAAC-TGCAAAAAGTCTTA-GCAAAAAACTTATT-CATT-GNAAATAAAAATAATGTAG-ATCTACTG--AAATTNTCTT---GTTA-TCAAACC-AGCAACAAGTCT-AAT--TTCAGC-CAA-AA-GCTTGT-CAATN-TCATGATAAGGC-AA-GCTCATTATGCA--TTCACTGACT-TTTAATTT-ACAA-TTCAT---TT--T-TTCAA-C---A-GAATTAAGAAA--CGAAGTA-CTGAATTAATTAAGAAACAAAGT-ACTAGAGA--GTGTCTTCTGCTGCATT-CA-----CAA--GTTGT-TTCCTACA-CTA-A-AATGTGTTTCTAACT--AAAAA-GAG-TTTC---G-GTAAGGG-AAATAA-TTGTTAGANATCAGC-TAAAC--TG-----GTACC---------CTGTTGACTC-C-----------------TCTCTTCTNTC---TTTGTTTNTAGC-CACCAATCAAC-GGGGTACCAGTTTAAAA-TCAGCC-TAAAAGTG-ATTTTTTT----GTATTCTC-ATGGCCTCTTAT-AAAAGAAATATTCTTNAGCCCATTCTATAATTTTGAGAAATTGTAGGTCAAGTATATGTGC-T--C----TTTTTTNAAACAAAAGTAAAGAAATTCCTC--AGACA-TTTTTT--AAATACAAG-AGAAAAAGGGGGT-AATTATTTGCCA-TTTT-CTGAAAAAC-A-C-CTAAAATGTTCTTTTTGNTACAATCTTA--AACATNTAAG-TTNAAAAAAAATCC-CCATNCATCC---GAACTTTTTTTTTNAAAAGTGAAGTGTATGTCTAGTGCATTTAGAAATGTTTCCGT-TGGGCTATTTTCCTGTGGGGCCTATATTTTCATT
Reference ( gi|1 ) : GTTGCGATTTTCTTTTT-CATTTTCACATTTAACATTCAGTTCGGTACGTGCATATCA-ATTGT-CAG-TGATTTTT----GCC--AA-TA-ACTTTACTGAAC-TA-GACC--ACTCT-GA--ATATGGACT------TGGA-AGGTAG--GCCTAGTTCA--AAAGAACTAGCCGCTAGG-CCTCAGTTA-----CTGCCCTCGGAAT-GGCAGAATGAATTATAAAAT-GTCTTAAGTTG-TAAAGAATATGT-AA----T-ACT---CATATTA------ATTATTGATTTATCTATTGTCCTCGTTTCTTTCATTCTAATTTTCTTTCTCG-AAGATCC--CTGAATACAGC---------TAAATTT-CAAAATAGTGTATTCATGATGTCGTCACAAGTATACTCAAACGTCATTG------AAAGTCATATCAATTATGA-CGTCATAG---CT-AAAGA-----ACTGGTGTTGTTTT-CTCCA-TCAT-TAGAATCATGTAGTCTTTTAGTGGTCCATATC-------TTCACATACCATCTGATTGAATTGAAATATAGTGTA--CA--TAATGA--AGTGTAAGCC------CCTATGCA--------TCAGACG---AAAACTAC-ATA-TTG-TGGA--CAAACTTG-C-CTGA-AGTT-CAATATGTT-GTG---GTTGGCAAAGCTGCTT-ATATC-AA---GCTA-G--TT-ACATTTC-TTTGATAAC-TACAAAAAGTCTGT-GCAAAAA-CGTATT-CATT-GCAAATAAAAATAATGCAG-ATCTACTG--ATATTTTCTT---GTTA-TCAAACC-AGCAACAAGTCC-AAT--TTCAGC-CAA-AA-GCTTGT-CAATT-TCATGATAAGGC-AA-GCTCATTATGCAAATTTACTGAAT-TTTAATCT-ACAA-TTAAT---TT--TATTCAA-C---ATGAATTAAGAAA--CAAAGTA-CTGAATCAATTAAGAAACAAAGT-ACTAGAGA--TTGTCTTCTGCTGCATGACA-----CAA--GTTGTCTTCCTACA-CTA-A-AATGTGTTTCTAACT--TAAAA-GAG-TTTC---A-GTATGGG-AAATAACTTGGTAGAGATCAGCCCAAAC--TG-----GTACC---------CTGTTGACTC-CTTTTTTCCCTTTTGAC-TCTTTTCTCTT---TTTGTTTTTAG--CACAAATCAAT-GGGGTGCCAGTTTAAAA-TCAGCC-TAAAAGTG-ATTTTTTT----GTATTGTCTATGGCTTCTTGT-AAAAGAAATATTCTTAAGCCCATTCTATATTTTTGAGAAATTGTAGATCAAGTATATGTG-----T----TTTTTTCAAACAAAAGTAA-------------AGACA-TGTTTTAAAAATACAATGAGAGAAAGGAGGT-AATTATTTGCCATTTTTATTGAAAA-------CTAAAATTTTTTTTTTGTTACAATCTTA--AACATCTAAG-TTAAAAAAAAATCC-CTATACATCC---CATCTATTTTTTTAAAAAGTGAAATGTATATCTAGTGTATTTATAAATGTCTCCAT-TGGGCTATGTTCCTGTGGAGACTATATTTTCATT
gi|5 : GTTGCGATTTTGTTTTTACATTTTCACATTTGACGTTCAGTTCGATACGTGCATATCA-ATTTT-CAC-TGATTTTT----GCC--AA-TA-GTGTTATT-AACATA-GACT--ATTCT-GGTTATATGGGCTGGGACCCGGA-GGGTAG--GCCTAGTTCA--AATGGACTAGCCGCTAGG-CCTCAGTTA-----CTGCCCTCAGAAT-CGCAGAATAAAGTATGAAAT-GTCTAAAGTTA-TAAAGAATATGT-AA----T-ACT---CGTATTA------ATTATTGATTTATTTATTATCCTTGTTTCTTCCATACCAGTTTTCTTTCTCT-AAGATCC--CCAAATATAGC---------T
gi|13 : tatttagcgagttggtttTTTTG-CATTTTCATATTTAACATTCAGTTCGGTACGTGAATATCA-
gi|11 : tatttagtatgttggttcattacttgaatgtgtATTGGACATTCAGTTTGGTGTCTGGATATCACATT-C-CAT-CTATCCTT----ATC--AATTA-ATGTTATTTATG-TA-GACC--GCTTT-TG--ACATTGAC-------TGGATATATAG--TTCCACTT------GGAA--AGCTGATAGG-CTTGATATA-----CAGCCCCCTGAATCCCCAAAACAAATTATA------TCC--AGTTT-TAAATAATAT
gi|10 : tACAGTGAGTTGGG---GTTTATCTCA-ATTTTTCAACTGACTCTTACATGCCCAAA-TAGATTTTATTGCAC-TATGGCCTTACTTTTGG--ACATGGGAC------TGCA-AAGTGGTTGTCT--TTGACTAAGTAACTCGCCGCTAGGGCCTT--TTA-----TTGCTCTCGCAGG-AACTGAA-AAATTTTTAAATAGTCTCA-GTTAATAAAGAATA
gi|8 : CTAG--CCTTAATTGATATGCTGCCCTCTGAAT-CACAGAATAAATTCTGAAAT-GTCTCAAGTTA-TAAAGAACATTTCAAGAGGTGACTCAACATACTAGCAGTTATTATTGAAATATCTTTT---CTCATTACTTTAATTTCACTTTTCTATCTCGTATAATCT--CTAAAT--AGCTTGCAAATGTAGATTT-TAGAATAGTGTATTCATGATGTCAT-----ATTCATTCAGACGTCATTGAATTTCAAAGTTA-ATCAATTATGA-CGGCATAGTTTCC-AACGA-----TCTGGT
gi|2 : AAAAT-GTCTAAAGTTG-TAAAGAATATGT-AA----C-AAT---CGTATTA------ATC--T-ATTTATTTATTGTCCTCGTTTCTTTCCTTCCATTTTTCTTTCTCT-----TTCTACTAAATGTATT---------TAAATTTTCAAAATAGTGTATTCATGATGTTGTCACATTTCCATTCTAACGTCATTG------AAAGTTATATCAATTATGA-CGTCATAG---CT-CAAGA-----ACTGGTTTTGTTTA-ATCCG-TCAT-TAGAATCATGTAGTCTTTTAGTGATCCATATCCTCTTATCTCACACATTATTTAATTGAATTGAAAAACATTGTA--CA--TAATGA--AGTGTAAGCC------CCTATCCA--------TAAGACA---AAAACTA--ATA-TTT-TAGG---AAACGTG-C-CTTA-AGTT-AACCA---T-ATG---GTCGGCAAAAC-------TATC-AA---ACTA-G--CT-AGATTTC-TTTGACAAA-TACAAAAAGTCTTA-ATAAAAA-A--ATT-CATT-GGAAATGAAAATACTGTAG-ATCTACTG--AAGTTCTCTT---GTTA-TAAAACG-ATCAGCAAGTCTAAAT--TTCAGT-CAA-AA-GCTTGT-CAATA-GCAAGATAAGGC-AA-GTTCATTATGCATTTTCACTGAAT-CTAAATTT-ACAA-TTCAT---CT--T-TTTAATC---AAGAATTAAGAAA--TGAAGTA-CTAAATTAATTAAAAAACAAAGT-ACTACATA--GTGTCTCCTGCTACAGTACATGTCTCAA--TTTGTTTACCTACA-CT--A-AATTTGTTTCTAACT--AAAAC-GAG-TTAC---A-GTAAGGA-AAATAAGTTGTTAGATATCAACCTAAAC--TG-----GTACT---------ATGTTGAATC-------------TTGCG-TCTTT-------------TTTTTAG--CACCAACCAAC-TGGGTAACAGTTTAAAA-TCAGCCTTAAAAGTGAAATTTTCT----ATATTTTTGATAGCCTCTTATGAAAAAAGGTATTCCTACGCACATTCTATAATTTTGAGATACTGTAAGTCAAACATATGTGCAT--C----TTTTTTTAAAT-AAAGTAAAGGAATTCCTC--AGACA-TTATTC--AAATACAAGGAGAAAAAAAAGA--AACCA---GCC---------------------CTAAAATGTTCTTTTTGTAACAATATTA--A
gi|9 : cattgaacacaatccATATCAATTATGAACGTCATAG---CT-AAGAACTGCAACTGGTTTTGTTTA-CTCCGCTCAT-TAGAATCATGTAGTTTTTT-----TTCACATA-------T--ACAT--TATTTAATTGAATGAAAATAT--TGTA--CAATTAAT-A--AGTGTAAGCCCTAATGCCTATGCA--------TAAGACA---ACAATT---ATA-TTGCTGGGCCCAAACTTG-C-CT
gi|3 : ggaagtttcaTAG---CTGAAAGA-----ACTG---TTGCTTTACTCAG-TCATGTAGAATCATGTAG-CTTTT----------------------CACATA--------TTGAATTGAAA-AT--TGTAATTA--TAATGACTGGTGTAAGCC------A--ATGCACCTTTCACTCAAGCACAAAAAACTACTATAATTG-TAAG--CAA--TTGACACTGACAGTTTCAA-ATGTTAGTC---GGTGCAAAAGCTGTTT-ATATC-AATTAGCTACGACTT-ACATTTCGTTTCATAAC-TGCAAAAAGTCTATAGCAAAAAACTTATT-CAT--GCAAATAAAAATAATGTA--ATCTACTG--AAATTTTCTTAAAGGTA-TCAAACCGAGCAACA-GTCT-AAT--TTCAGC-CAA-AAAGCTTGT-CAATCATCATGA--AGGC-AAAGCTCCATATTCAAATT--CTGACT-TTTTATTTTACAACTTTATGTCTTCCTGTTCAC-C---A-GAATAATGAAA--CAAG--A-CTGAATTGAATAAGAAACAAAGT-ACTAGAGA--GTGCTTTCTCGAGCATT-CA-----AAA--GTTGT-TTCCTACA-CTATACAAGGT-TTTCTAACTATTAAAAAGAGGTTTC---ACGTAAGGG-AAAT------GCAGCAAT------AAAC--TGTACATGTACC---------CTGTGGACTC-CT-----------------CGTCTCTTTC---TTTGTTTTTAG--CACAAATCAAT-GGG-TACCAGTTTAAAA-TCAGCC-TAAAAATG-ATTTTTTTTTTGGTATTCTCTATGGCCTCTTAT-AAAAGAAATATGCTTGAGCCCATTCTATAATTTTGAGAAGTTGTAGGTCAAGTATATGTG-----CTTCATTTTTTAAAACAAAAGTAAAGAAATTCTTC--AGACA-TTTTTTTTAAATACAAGCAGAAAAAGG-GGT-AATTATTTGACATTTTTACTGAAAAACAACC-CTACAATGTGCTTTTTGATACAATCTTA--AACATGTAAG-TTTAAAAAAAAAC----ATACATCC---GAACTTTTTTTCTTAAAAGTGAAGTGTATGTCTAGTGCATCTAGAAA--TTTCCGT-TGGCAT-TGTCCCTGTGG-GCCTATGTTTTCAT
gi|4 : TT-CAATATGTT-GTGTCCATCGGCAAAGCTGTTTTATATCTAA---GCTA-G--TTTACATTTC-TTTCATAACCTGCAAAAAGTCTTA-GCAAAAAACTTATTACATTCGTAAATAAGA-TAATGTAGGATCTACTGCCAAATTATCTT---ATTAATCAA-CC-TGCAACAAGTCT-AATATCTCAGCACAAGAA-GCCTGTTCAAAG-TAATTATAAGGCCAA-GCTCATTATGCA--CTCACTGACTATTTAATTA-GCAA-TTCATC--TT--TTTTCCA-CCAAAT-AATTAAGAAAAACAAAGTAACTGAATTAATTAAGAAACAAAGGAACTAGAGACGTGGTCTT-TGCTGCATGTCA-----CAAGGGCTGT-TTACTACATCCA-A-AATGTGTTTCTAACT--ATCAA-GAG-TTTCCATG-GTAAGGGAAAATAACTTGTTAGAG-TCAGCATAACCAGTG-----GTACCAGGCCCACACTGTTGACTC-------------TTG-------TTCTCTT---CTTGTTTTGAGTTCA-AAATCAAT-GGGGGACCAGTTTAAAAGTCAGCC-TCAAAGT---TTTTTTT-----------------TTTTTT----AAAGAAATTTTCTTTACCCAATTCTAT----------AATGTTAGAGCAAGTATATGTGCTTCAT----TTTTTTCAAACAAAAGTAACGAAATTCCTCAGAAACATTTTTTTAAAAATACA---AGCAAAAGGGGGTAAATTATTTGCCAATTTTTCTGAAAAATCAGCCCTAAAAATGTTTTTTTGCTACAATCTTACCAATATA-AAGTTTAAAAGAAAATCCGCCATTCATTCCGACACTTTTTTTTTTTTAAAGTGAAATGTATGTCTAGattg
gi|15 : AAAC--TG-----GTATC---------CTGTTGGCTC-------------------TCGCTTCTCTCAAGTTTGCGTGTAG--CACCAATCAATGGGGGTACCAG
gi|17 : AAC--TG-----GTACC---------CTGTTGACTT-C--------------ACATCTCTTATGTT---TCTG--TGTAGC-CACCAATCAGT-GGGGTACCA
gi|16 : tAC--TG-----GTACC---------CTGTTGAC--------TTCGCAT----C-TCT----TATG---TTTGTGTGTAGC-CACCGATCAGC-GGGGTACCAGT
gi|21 : AC--TG-----GTACC---------CTGTTGACTCGCTTCTCTC
gi|6 : -------CTAAAATGTTCTTTTTGATACAATCTTT--ATCATCTAAG-TTTAGATAAAATCC-CCATCCATCC---GAACTTTTTTTTAAAAAAATGAAGTGTATATCTAGTGCATTTAGAAATGTTTCCAG-TGGGCTATTTTCCTGTGGGGCCTATATTTTCATaagt
gi|7 : cTCTTA--AACATCTAAG-TTAAAAAAAAATCC-CCTTACATTC---GAACTTTTATTTTAAAAAGTGAAGTGTATGTCTAGTACATTTAGAAATGTCT-CATGTGAGCCATTTTTCTGTGGGGCCTATATTTTCATgttttgctttatttgactggtgtttccatgacaacagctaagaatataatttttatatacaacttattttaatactaaataggcaaacatgaagaaaatattacttgtaggagaatatcaaacaacccatttccagcaatttttggtccctacagataatcag
gi|14 : GGAGACTATATTTTCATTgttttgctttatttgactggtgtttccatgacaacagctaggaatataatttttatatacaacttattttaatgctaaataggcatacttgaagaaaatattacttgaaggataataccaaacatcccatttccagcaaattttggtcctaacagataatcagtgt
4 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|12 ): TGTATTTTCATGTTTTGCTTTATTTGATTGGTGTTTCCATGACAACAGCTATAGATACATATATGTAGGAATTTTTATATACAACTTATTTTAATACTAAATAGGCATACTTGAGAATTACTCGTAGGAGAATATCAAACATC
Unaligned ( gi|18 ): CTCAAGTTTGTGTGTAGCACCAATCAACGAGGTACC
Unaligned ( gi|19 ): AACTGATATCCTGTTGGCTCTCGCTTGTCTCTAGT
Unaligned ( gi|20 ): ACTGGTATCCTGTTGGCTCTCGCTTCTCTCGAGT
Alignments
lowQualScore : 1111111111111111111111
lowQualScore : 11 1 1 2222 11 1 1 222222 1 111 11111 3333333 1 11 5555555 22222 1111 1111 11 22222222 3333333 444444 11 11 444444444 444444 111 1 111 22222 1 1 1 0000000000000000000000 22 444 11 11 11 11 222222 444444444 1 1 222 1 1 111 1 1 2 1 1 111 111 1 1 111 1 11 1 1 1 1 1 11 11 11 111 1 1 1111 1 1 1 1 11 1 1 11111 2222 1 1 1 333333333333 33333 11 1 11 1 1 1 3333333333 11 1 1 1 1111 111 1 22222 1 33 11 3333 11111 111111111 444444444444444444 111 1 1 11 4444444444444 111 444444444 11 11 333 2222 1 222222222 444444 1
lowQualScore : 33 0 1 0 1 0 1111 33 0 0 2 666666 0 555 44444 7777777 2 0 1 33 0000000 0 2 8 666 00000 5555 2222 4 888 6 00 77 99999999 2222222 3 2 6 1 000000 33 11 000000000 0 7 6 0 6 1 3 11 222222 777 3 0 444 8 00000 3 0 0 0 3 1111111111111111111111 33 3 0 0 3 111 33 33 33 2 33 888888 2 000000000 0 0 777 0 0 666 3 0 0 1 3 0 0 3 3 777 777 3 0 0 0 777 0 33 0 0 2 0 0 3 55 0 33 1 7 22 33 1 777 0 3 0 3 4444 0 0 0 0 11 3 0 0 3 2 88888 1111 2 0 0 0 0 000000000000 22222 33 0 33 0 0 0 2 3333333333 33 0 0 0 4444 2 777 0 99999 0 33 3 33 3333 66 11111 777777777 1 555555555555555555 66 1 777 6 1 888 5 0 0 22 3333333333333 0 0 444 1 2 999 00 222222222 1 3 9 0 0 33 33 111 9999 6 2 0 2 999999999 555555 8 3 1 99 11 1 8 0 8 1 8 8 8 1 3 77 2 0 2
lowQualScore : .. . . . . . .... .. . . . ...... . ... ..... ....... . . . .. ....... . . . ... ..... .... .... . ... . .. .. ........ ....... . . . . ...... .. .. ......... . . . . . . . .. ...... ... . . ... . ..... . . . . . ...................... .. . . . . ... .. .. .. . .. ...... . ......... . . ... . . ... . . . . . . . . . ... ... . . . . ... . .. . . . . . . .. . .. . . .. .. . ... . . . . .... . . . . .. . . . . . ..... .... . . . . . ............ ..... .. . .. . . . . .......... .. . . . .... . ... . ..... . .. . .. .... .. ..... ......... . .................. .. . ... . . ... . . . .. ............. . . ... . . ... .. ......... . . . . . .. .. ... .... . . . . ......... ...... . . . .. .. . . . . . . . . . . .. . . .
lowQualScore : 33 8 0 0 0 0 2222 88 0 0 5 222222 0 888 00000 5555555 0 0 0 88 0000000 2 5 0 444 00000 0000 0000 2 777 7 77 00 00000000 5555555 2 5 5 0 555555 88 22 000000000 7 3 7 7 7 0 7 77 333333 555 2 0 000 0 00000 0 0 0 0 2 2222222222222222222222 22 2 8 8 2 222 88 88 88 5 88 888888 5 000000000 0 0 000 0 0 222 2 0 0 0 3 0 5 2 2 555 555 2 8 0 0 555 0 88 0 0 5 0 0 2 55 0 22 0 0 55 88 0 555 0 2 0 2 8888 0 0 0 0 00 2 0 0 2 5 55555 2222 5 0 0 0 2 222222222222 22222 88 5 22 0 0 0 5 0000000000 88 0 0 0 2222 5 555 0 55555 0 22 0 88 8888 11 11111 888888888 1 888888888888888888 11 0 000 1 0 222 0 0 0 55 8888888888888 2 2 000 0 5 000 55 888888888 0 2 2 8 2 88 88 222 5555 5 5 0 5 555555555 555555 0 2 0 22 88 0 0 8 0 0 0 0 0 0 2 22 5 0 5
consensus : GTTGCGATTTTGTTTTTGCATTTTCACATTTGACATTCAGTTCGGTACGTGNATATCAATTTT-CANC-GATTCTT----GCC--AA-TA-ATNTTATT-A-ACGTA-GACC--ACTCT-GG--ACATGGGC------CTGGA-AGGTAG--GCCTAGTTCA--AAGGAACTAGCCGCTA-GGCCTCAGTTA-----CTGCCCTC---GGAAT-CGCAGAATAAATTNTGAAAT-GTCTNAAGTT-ATAAAGAATAT--------GTAA-------TACTCGTATTAATTATTGATTTATCTATTGTCCTCGTTTCTTTCATTCCANTTTTCTTTCTC-TAA-GATCC--CTAAATATAGCT---------AAATTTTCAAAATAGTGTATTCATGATGTCGTCACATNTNCATTCAAACGTCATTGAA----AAAGTT---ATATCAATTATGA-CGTCATAG---CT-AAAGA-----ACTGGTTTTG-TTTACTCCG-TCAT-TAGAATCATGTAGTCTTTTAGTGGTCCATATCCT-------CACATACTATTTAATTGAATTGAAAA--AT--TGTA--CA--TAATGA--AGTGTAAGCC------CCTATGCAT---------AAG-ACAAAAA-CTAC-ATA-TTG-TGGG--CAAACTTG-C-CTGA-AGTT-CAATATGTTGTG---GTCGGC---AAAGCTGTTT-ATATC-AA---GCTA-G--TT-ACATTTC-TTTNATAAC-TGCAAAAAGTCT-TAGCAAAAAACTTATT-CATT-GCAAATAAAAATAATGTA-GATCTACTG--AAATTTTCTT---GTT-ATCAAACC-AGCAACAAGTCT-A--ATTTCAGC-CAA-AA-GCTTG-TCAATN-TCATGATAAGG-CAA-GCTCATTATGC--A--TTCA----CTGANT-TTTAATTT-ACAA-TTCA--T---TTT---TTCAACCA-A-GAATTAAG--AAACGAAGT-ACTGAATTAATTAAGAAACAAAGT-ACTAGAGA-GT-GTCTTCTGCTGCAT-TACA-----CAA--GTTGT-TT-CCTACA-CTA-A-AATGTGTTTCTAACTA---AAAAGAG-TTTC---A-GTAAGGG-AAATAACTTGTTAGAGATCAGCCA-TAAAC--TG-----GTACC---------CTGTTGACTCC----------------TC-TCTTCTCTC---TTTGTTTNTAG-CCACCAATCAAC-GGGGTACCAGTTTAAAA-TCAGCC-TAAAAGTG-ATTTTTTT----GTATTNTCTATGGCCTCTTAT-AAAAGAAATATTCTTAAGCCCATTCTATAATTTTGAGAAATTGTAGGTCAAGTATATGTGC-T---T--TTTTTTCAAACAAAAGTAAAGAAATTCCTCAG--ACA--TTTTTT-A-AAATACAA-G-AGAAAAAGGGGGT-AATTATTTGCCA--TTTTTACTGAAAAA-CAGCCCT-AAAATGTTCTTTTTGNTACAATCTTA--AACATCTAAGTTTAAAA-AAAATCC-CCATACA-TCCGA-AC-TTTTTTTTTAAAAAGTGAAGTGTATGTCTAGTGCATTTAGAAATGTCTCCGNTGGGCCATT-TTCCTGTGGGGCCTATATTTTCATT
Reference ( family-1091 ) : GTTGCGATTTTGTTTTNACATTTTCACATTTGACATTCAGTTCGGTACGTGNATATCAATTTT-CANC-GATTCTT----GCC--AA-TA-ATGTTATT-A-AC-TA-GACC--GCTTT-GG--ACATGGGC------CCGGA-ANGTAG--GTCTA--TTA--AAGGAACTAGCCGCTA-GGCCTTANTTA-----CTGCCCTC---NGAAT-CGCAGAATAAATTNTGAAAT-GTCTNAAGTT-ATAAAGAATAT--------GTAA-------TACTCGTATTAATTATTGATTTATTTATTGTCCTCGTTTCTTTCATTCCANTTTTCTTTCTC-T-A-GATCC--CTAAATGTAGCT---------AGATTTTCAGAATAGTGTATTCATGATGTCGTCACATNTCCATTCNGACGTCATTGAATTTCAAAGTT---ATATCAATTATGA-CGTCATAG---CT-AAAGA-----ACTGGTTTTG-TTTACTCCG-TCAT-TAGAATCATGTAGTCTTTT-----TCCACATC---------CACATA-TATTTAATTGAATTGAAA---AT--TGTA--CA--TAATGA--AGTGTAAGCC------CCTATGCAT---------AAG-ACAAAAA-CTA--ATA-TTG-TAGG--CAAACTTG-C-CTNACAGTT-CAACATGTTGTG---GTCGGC---AAAGCTGTTT-ATATC-AA---GCTA-G--TT-ACATTTC-TTTCATAAC-TGCAAAAAGTCT-TAGCAAAAAACTTATT-CATT-GNAAATAAAAATAATGTA-GATCTACTG--AAATTNTCTT---GTT-ATCAAACC-AGCAACAAGTCT-A--ATTTCAGC-CAA-AA-GCTTG-TCAATN-TCATGATAAGG-CAA-GCTCATTATGC--A--TTCA----CTGACT-TTTAATTT-ACAA-TTCA--T---TTT---TTCAAC---A-GAATTAAG--AAACGAAGT-ACTGAATTAATTAAGAAACAAAGT-ACTAGAGA-GT-GTCTTCTGCTGCAT-T-CA-----CAA--GTTGT-TT-CCTACA-CTA-A-AATGTGTTTCTAACTA---AAAAGAG-TTTC---G-GTAAGGG-AAATAA-TTGTTAGANATCAG-C--TAAAC--TG-----GTACC---------CTGTTGACTCC----------------TC-TCTTCTNTC---TTTGTTTNTAG-CCACCAATCAAC-GGGGTACCAGTTTAAAA-TCAGCC-TAAAAGTG-ATTTTTTT----GTATTCTC-ATGGCCTCTTAT-AAAAGAAATATTCTTNAGCCCATTCTATAATTTTGAGAAATTGTAGGTCAAGTATATGTGC-T---C--TTTTTTNAAACAAAAGTAAAGAAATTCCTCAG--ACA--TTTTTT---AAATACAA-G-AGAAAAAGGGGGT-AATTATTTGCCA--TTTT--CTGAAAAA-CA--CCT-AAAATGTTCTTTTTGNTACAATCTTA--AACATNTAAGTTNAAAA-AAAATCC-CCATNCA-TCCGA-AC-TTTTTTTTTNAAAAGTGAAGTGTATGTCTAGTGCATTTAGAAATGTTTCCGTTGGGCTATT-TTCCTGTGGGGCCTATATTTTCATT
gi|1 : GTTGCGATTTTCTTTTT-CATTTTCACATTTAACATTCAGTTCGGTACGTGCATATCAATTGT-CAGT-GATTTTT----GCC--AA-TA-ACTTTACTGA-AC-TA-GACC--ACTCT-GA--ATATGGAC------TTGGA-AGGTAG--GCCTAGTTCA--AAAGAACTAGCCGCTA-GGCCTCAGTTA-----CTGCCCTC---GGAAT-GGCAGAATGAATTATAAAAT-GTCTTAAGTT-GTAAAGAATAT--------GTAA-------TACTCATATTAATTATTGATTTATCTATTGTCCTCGTTTCTTTCATTCTAATTTTCTTTCTC-GAA-GATCC--CTGAATACAGCT---------AAA-TTTCAAAATAGTGTATTCATGATGTCGTCACAAGTATACTCAAACGTCATTG------AAAGTC---ATATCAATTATGA-CGTCATAG---CT-AAAGA-----ACTGGTGTTG-TTTTCTCCA-TCAT-TAGAATCATGTAGTCTTTTAGTGGTCCATATCTT-------CACATACCATCTGATTGAATTGAAAT--ATAGTGTA--CA--TAATGA--AGTGTAAGCC------CCTATGCAT---------CAG-ACGAAAA-CTAC-ATA-TTG-TGGA--CAAACTTG-C-CTGA-AGTT-CAATATGTTGTG---GTTGGC---AAAGCTGCTT-ATATC-AA---GCTA-G--TT-ACATTTC-TTTGATAAC-TACAAAAAGTCT-GTGC-AAAAACGTATT-CATT-GCAAATAAAAATAATGCA-GATCTACTG--ATATTTTCTT---GTT-ATCAAACC-AGCAACAAGTCC-A--ATTTCAGC-CAA-AA-GCTTG-TCAATT-TCATGATAAGG-CAA-GCTCATTATGCAAA--TTTA----CTGAAT-TTTAATCT-ACAA-TTAA--T---TTTA--TTCAAC---ATGAATTAAG--AAACAAAGT-ACTGAATCAATTAAGAAACAAAGT-ACTAGAGA-TT-GTCTTCTGCTGCAT-GACA-----CAA--GTTGTCTT-CCTACA-CTA-A-AATGTGTTTCTAACTT---AAAAGAG-TTTC---A-GTATGGG-AAATAACTTGGTAGAGATCAGCC--CAAAC--TG-----GTACC---------CTGTTGACTCCTTTTTTCCCTTTTGACTC-TTTTCTCTT---TTTGTTTTTAG--CACAAATCAAT-GGGGTGCCAGTTTAAAA-TCAGCC-TAAAAGTG-ATTTTTTT----GTATTGTCTATGGCTTCTTGT-AAAAGAAATATTCTTAAGCCCATTCTATATTTTTGAGAAATTGTAGATCAAGTATATGTG------T--TTTTTTCAAACAAAAGTAA-----------AG--ACA--TGTTTTAA-AAATACAATG-AGAGAAAGGAGGT-AATTATTTGCCA--TTTTTATTGAAAA-------CT-AAAATTTTTTTTTTGTTACAATCTTA--AACATCTAAGTTAAAAA-AAAATCC-CTATACA-TCCCA-TC-TATTTTTTTAAAAAGTGAAATGTATATCTAGTGTATTTATAAATGTCTCCATTGGGCTATG-TTCCTGTGGAGACTATATTTTCATT
gi|10 : ACAGTGAGTTGGG---GTTTATCTCAATTTTTCAACTGACTCTTACATGCCCAAA-TAGATTTTATT-GCAC-TATGGCCTTACTTTTGG--ACATGGGA------CTGCA-AAGTGGTTGTCTT--TGACTAAGTAACTCGCCGCTAGGGCCTT--TTA-----TTGCTCTCGCAGGAA----CTGAA-AAATTTTTAAATAGTCTC-AGTTAATAAAGAATA
gi|11 : ATTGGACATTCAGTTTGGTGTCTGGATATCACATTC-CATC-TATCCTT----ATC--AATTA-ATGTTATT-T-ATGTA-GACC--GCTTT-TG--ACATTGA-------CTGGATATATAG--TTCCAC-TT-----GGAA--AGCTGATA-GGCTTGATATA-----CAGCCCCC---TGAATCCCCAAAACAAATT-----AT-ATCC--AGTT-TTAAATAATAT--------
gi|13 : tTGTTTTTGCATTTTCATATTTAACATTCAGTTCGGTACGTGAATATCA
gi|15 : tatttagtatgttggttcattacttgaatgAAAC--TG-----GTATC---------CTGTTGGCT-C----------------TC-GCTTCTCTCAAGTTTGCGTGTAG--CACCAATCAATGGGGGTACCAG
gi|16 : AC--TG-----GTACC---------CTGTTGACTTC----------------GCATCTCTTATG---TTTGTGTGTAG-CCACCGATCAGC-GGGGTACCAGT
gi|17 : AAC--TG-----GTACC---------CTGTTGACTTCACA-------------TC-TCTTATGTT---TCTGT--GTAG-CCACCAATCAGT-GGGGTACCA
gi|18 : t---TTTGTGTGTAG-C-ACCAATCAAC-GAGGTACC
gi|2 : ctcaagGAACACAATCCAAAAT-GTCTAAAGTT-GTAAAGAATAT--------GTAA-------CAATCGTATTAATC--T-ATTTATTTATTGTCCTCGTTTCTTTCCTTCCATTTTTCTTTCTC-T-----TTCTACTAAATGTATTT---------AAATTTTCAAAATAGTGTATTCATGATGTTGTCACATTTCCATTCTAACGTCATTGAA------AGTT---ATATCAATTATGA-CGTCATAG---CT-CAAGA-----ACTGGTTTTG-TTTAATCCG-TCAT-TAGAATCATGTAGTCTTTTAGTGATCCATATCCTCTTATCTCACACATTATTTAATTGAATTGAAAAACAT--TGTA--CA--TAATGA--AGTGTAAGCC------CCTATCCAT---------AAG-ACAAAAA-CTA--ATA-TTT-TAGG---AAACGTG-C-CTTA-AGTT-AACCA---TATG---GTCGGC---AAAAC-------TATC-AA---ACTA-G--CT-AGATTTC-TTTGACAAA-TACAAAAAGTCT-TAATAAAAAA---ATT-CATT-GGAAATGAAAATACTGTA-GATCTACTG--AAGTTCTCTT---GTT-ATAAAACG-ATCAGCAAGTCTAA--ATTTCAGT-CAA-AA-GCTTG-TCAATA-GCAAGATAAGG-CAA-GTTCATTATGC--ATTTTCA----CTGAAT-CTAAATTT-ACAA-TTCA--T---CTT---TTTAATCA-A-GAATTAAG--AAATGAAGT-ACTAAATTAATTAAAAAACAAAGT-ACTACATA-GT-GTCTCCTGCTACAG-TACATGTCTCAA--TTTGT-TTACCTACA-CT--A-AATTTGTTTCTAACTA---AAACGAG-TTAC---A-GTAAGGA-AAATAAGTTGTTAGATATCAACC--TAAAC--TG-----GTACT---------ATGTTGA---------------------A-TCTTGCGTC---TTT-TTTTTAG--CACCAACCAAC-TGGGTAACAGTTTAAAA-TCAGCCTTAAAAGTGAAATTTTCT----ATATTTTTGATAGCCTCTTATGAAAAAAGGTATTCCTACGCACATTCTATAATTTTGAGATACTGTAAGTCAAACATATGTGCAT---C--TTTTTTTAAAT-AAAGTAAAGGAATTCCTCAG--ACA--TTATTC---AAATACAAGG-AGAAAAAAAAG---------------------------AAAC-CAGCCCT-AAAATGTTCTTTTTGTAACAATATTA--A
gi|20 : cattAC--TG-----GTATC---------CTGTTGGCT-C----------------TC-GCTTCTCTC---
gi|21 : AC--TG-----GTACC---------CTGTTGA---C----------------TC-GCTTCTCTC---gagt
gi|3 : TAG---CTGAAAGA-----ACTG---TTGCTTTACTCAG-TCATGTAGAATCATGTAG-CTTTT----------------------CACATA-T-------TGAATTGAAA---AT--TGTAATTA--TAATGACTGGTGTAAGCC------A--ATGCACCTTTCACTCAAGCACAAAAAACTACTATAATTG-TAAG--CAA--TTGACACTGACAGTTTCAA-ATGTTA-----GTCGGTGCAAAAGCTGTTT-ATATC-AATTAGCTACGACTT-ACATTTCGTTTCATAAC-TGCAAAAAGTCTATAGCAAAAAACTTATT-CAT--GCAAATAAAAATAATGTA--ATCTACTG--AAATTTTCTTAAAGGT-ATCAAACCGAGCAACA-GTCT-A--ATTTCAGC-CAA-AAAGCTTG-TCAATCATCATGA--AGG-CAAAGCTC--CAT----A--TTCAAATTCTGACT-TTTTATTTTACAACTTTA--TGTCTTCCTGTTCACC---A-GAATAATG--AAAC-AAG--ACTGAATTGAATAAGAAACAAAGT-ACTAGAGA-GT-GCTTTCTCGAGCAT-T-CA-----AAA--GTTGT-TT-CCTACA-CTATACAAGGT-TTTCTAACTATTAAAAAGAGGTTTC---ACGTAAGGG-AAATG-------------CAG-CAATAAAC--TGTACATGTACC---------CTGTGGACTCC----------------TC-GTCTCTTTC---TTTGTTTTTAG-C-ACAAATCAAT-GGG-TACCAGTTTAAAA-TCAGCC-TAAAAATG-ATTTTTTTTTTGGTATTCTCTATGGCCTCTTAT-AAAAGAAATATGCTTGAGCCCATTCTATAATTTTGAGAAGTTGTAGGTCAAGTATATGTGC-T---TCATTTTTTAAAACAAAAGTAAAGAAATTCTTCAG--ACATTTTTTTT---AAATACAA-GCAGAAAAA-GGGGT-AATTATTTGACA--TTTTTACTGAAAAA-CAACCCT-ACAATGTGCTTTTTGATACAATCTTA--AACATGTAAGTTTAAAA-AAAA----ACATACA-TCCGA-AC-TTTTTTTCTTAAAAGTGAAGTGTATGTCTAGTGCATCTAGAAA--TTTCCGTTGG--CATTGTCCCTGT-GGGCCTATGTTTTCATaagt
gi|4 : TT-CAATATGTTGTGTCCATCGGC---AAAGCTGTTTTATATCTAA---GCTA-G--TTTACATTTC-TTTCATAACCTGCAAAAAGTCT-TAGCAAAAAACTTATTACATTCGTAAAT-AAGATAATGTAGGATCTACTGCCAAATTATCTT---ATTAATC-AACC-TGCAACAAGTCT-AATATCTCAGCACAAGAA-GCCTGTTCAAAG-TAATTATAAGGCCAA-GCTCATTATGC--A--CTCA----CTGACTATTTAATTA-GCAA-TTCATCT---TTT---TTCCACCAAA-TAATTAAGAAAAACAAAGTAACTGAATTAATTAAGAAACAAAGGAACTAGAGACGTGGTCTT-TGCTGCATGT-CA-----CAAGGGCTGT-TT-ACTACATCCA-A-AATGTGTTTCTAACTA---TCAAGAG-TTTCCATG-GTAAGGGAAAATAACTTGTTAGAG-TCAG-CA-TAACCAGTG-----GTACCAGGCCCACACTGTTGACTC------------------T-TGTTCTCTT---CTTGTTTTGAGTTCA-AAATCAAT-GGGGGACCAGTTTAAAAGTCAGCC-TCAAAGT---TTTTTTT-------TT----------TTTT----AAAGAAATTTTCTTTACCCAATTCTATAATGTT-AGAG---------CAAGTATATGTGC-TTCAT--TTTTTTCAAACAAAAGTAACGAAATTCCTCAGAAACA--TTTTTTTAAAAATACA----AGCAAAAGGGGGTAAATTATTTGCCAATTTTT--CTGAAAAATCAGCCCTAAAAATGTT-TTTTTGCTACAATCTTACCAATATA-AAGTTTAAAAGAAAATCCGCCATTCATTCCGACACTTTTTTTTTTTTAAAGTGAAATGTATGTCTAGattg
gi|5 : GTTGCGATTTTGTTTTTACATTTTCACATTTGACGTTCAGTTCGATACGTGCATATCAATTTT-CACT-GATTTTT----GCC--AA-TA-GTGTTATT-A-ACATA-GACT--ATTCT-GGTTATATGGGCTGGGACCCGGA-GGGTAG--GCCTAGTTCA--AATGGACTAGCCGCTA-GGCCTCAGTTA-----CTGCCCTC---AGAAT-CGCAGAATAAAGTATGAAAT-GTCTAAAGTT-ATAAAGAATAT--------GTAA-------TACTCGTATTAATTATTGATTTATTTATTATCCTTGTTTCTTCCATACCAGTTTTCTTTCTC-TAA-GATCC--CCAAATATAGCT---------
gi|6 : tatttagcgagttggttt--CCT-AAAATGTTCTTTTTGATACAATCTTT--ATCATCTAAGTTTAGAT-AAAATCC-CCATCCA-TCCGA-AC-TTTTTTTTAAAAAAATGAAGTGTATATCTAGTGCATTTAGAAATGTTTCCAGTGGGCTATT-TTCCTGTGGGGCCTATATTTTCAT
gi|7 : TCTTA--AACATCTAAGTTAAAAA-AAAATCC-CCTTACA-TTCGA-AC-TTTTATTTTAAAAAGTGAAGTGTATGTCTAGTACATTTAGAAATGTCTCATGTGAGCCATT-TTTCTGTGGGGCCTATATTTTCATgttttgctttatttgactggtgtttccatgacaacagctaagaatataatttttatatacaacttattttaatactaaataggcaaacatgaagaaaatattacttgtaggagaatatcaaacaacccatttccagcaatttttggtccctacagataatcag
gi|8 : CTA-G-CCTTAATTGATATGCTGCCCTC---TGAAT-CACAGAATAAATTCTGAAAT-GTCTCAAGTT-ATAAAGAACATTTCAAGAGGTGACTCAACATACTAGCAGTTATTATTGAAATATCTTTT---CTCATTACTTTAATTTCACTTTTCTATCTCGT-ATAATCT--CTAAAT--AGCTTGCAAATGTAGATTTT-AGAATAGTGTATTCATGATGTC-----ATATTCATTCAGACGTCATTGAATTTCAAAGTT---A-ATCAATTATGA-CGGCATAGTTTCC-AACGA-----TCTGGTgttttgctttatttgactggtgtttccatgacaacagctaggaatataatttttatatacaacttattttaatgctaaataggcatacttgaagaaaatattacttgaaggataataccaaacatcccatttccagcaaattttggtcctaacagataatcagtgt
gi|9 : AAGTTTCAATATCAATTATGAACGTCATAG---CT-AAGAACTGCAACTGGTTTTG-TTTACTCCGCTCAT-TAGAATCATGTAGTTTTTT-----TTCACATA---------TACAT--TATTTAATTGAA-TGAAAAT-AT--TGTA--CAATTAAT-A--AGTGTAAGCCCTAATGCCTATGCAT---------AAG-ACAACAA-TT---ATA-TTGCTGGGCCCAAACTTG-C-CT
3 sequences could not be aligned to this reference sequence:
Unaligned ( gi|12 ): TGTATTTTCATGTTTTGCTTTATTTGATTGGTGTTTCCATGACAACAGCTATAGATACATATATGTAGGAATTTTTATATACAACTTATTTTAATACTAAATAGGCATACTTGAGAATTACTCGTAGGAGAATATCAAACATC
Unaligned ( gi|14 ): GGAGACTATATTTTCATTTGTGAGAATATGAAACATTCCATTTCCAGCAAATTTTGGTCCTTACAGATAATCAGTGT
Unaligned ( gi|19 ): AACTGATATCCTGTTGGCTCTCGCTTGTCTCTAGT
Alignments
lowQualScore : 1 1 1 2222 11 1 1 222222 1 11 11111 3333333 1 11 1111 22222 1111 1111 11 22222222 3333333 11111 11 111 444444 1 333333 111 1 111 22222 1 1 1 6666666666666666666666 11 333333 11 11 11 222222 444444444 1 1 222 1 1 111 1 1 1 1 111 111 1 1 111 1 11 1 1 1 1 1 11 11 11 111 1 1 1111 1 1 1 1 11 1 1 11111 2222 1 1 1 11 1 222222 111 11 1 11 1 1 1 11 22222 11 1 1 1 1111 111 1 22222 1 11 1 11111 111111111 4444444444444444444444444 111 1 1 11 22222 1 333333333 11 4444 2222 222 11 1
lowQualScore : 2 0 1 0 1 0 1111 33 0 0 1 555555 0 33 44444 7777777 0 0 33 55 9999 0 2 8 555 00000 7777 2222 4 888 6 00 77 99999999 2222222 3 2 6 1 44444 33 7 777 000000 2 1 1 444444 3 777 3 0 444 8 00000 3 0 0 0 3 6666666666666666666666 11 0 0 3 111111 33 33 2 33 888888 2 000000000 0 0 222 0 0 666 3 0 0 3 0 7 3 3 777 777 3 0 0 0 777 0 33 0 0 1 0 0 3 55 0 33 0 7 22 33 1 777 0 3 0 3 4444 0 0 0 0 11 3 0 0 3 2 88888 1111 1 0 0 0 0 33 0 0 888888 6 333 33 0 33 0 0 0 2 22 55555 33 0 0 0 4444 2 777 0 22222 0 55 3 11 2 5 55 00000 666666666 3333333333333333333333333 666 6 1 888 5 0 0 22 77777 1 3 0 0 0 0 1 2 999 00 555555555 0 3 9 0 0 33 3333 9999 222 2 3 33 99 0 8 3 1 99 0 1 8 0 8 1 8 8 8 1 3 55 2 0 2
lowQualScore : . . . . . . .... .. . . . ...... . .. ..... ....... . . .. .. .... . . . ... ..... .... .... . ... . .. .. ........ ....... . . . . ..... .. . ... ...... . . . ...... . ... . . ... . ..... . . . . . ...................... .. . . . ...... .. .. . .. ...... . ......... . . ... . . ... . . . . . . . . ... ... . . . . ... . .. . . . . . . .. . .. . . .. .. . ... . . . . .... . . . . .. . . . . . ..... .... . . . . . .. . . ...... . ... .. . .. . . . . .. ..... .. . . . .... . ... . ..... . .. . .. . . .. ..... ......... ......................... ... . . ... . . . .. ..... . . . . . . . . ... .. ......... . . . . . .. .... .... ... . . .. .. . . . . .. . . . . . . . . . . . .. . . .
lowQualScore : 0 8 0 0 0 0 2222 88 0 0 0 222222 0 88 00000 5555555 0 2 88 88 5555 2 5 0 444 00000 2222 0000 2 777 7 77 00 00000000 5555555 2 5 5 0 00000 88 0 555 777777 0 0 0 777777 2 555 2 0 000 0 00000 0 0 0 0 2 0000000000000000000000 22 8 8 2 888888 88 88 5 88 888888 5 000000000 0 0 000 0 0 222 2 0 0 3 0 0 2 2 555 555 2 8 0 0 555 0 88 0 0 0 0 0 2 55 0 22 2 0 55 88 2 555 0 2 0 2 8888 0 0 0 0 00 2 0 0 2 5 55555 2222 0 0 0 0 2 88 8 0 000000 5 888 88 5 22 0 0 0 5 88 00000 88 0 0 0 2222 5 555 0 22222 0 88 0 88 5 5 55 00000 000000000 5555555555555555555555555 444 1 0 222 0 0 0 55 88888 0 2 2 2 8 0 2 5 000 55 555555555 2 2 2 8 2 88 5555 5555 000 5 5 88 22 2 0 2 0 22 8 4 0 8 0 0 0 0 0 4 2 22 5 0 5
consensus : GTTGCGATTTTGTTTTTGCATTTTCACATTTGACATTCAGTTCGGTACGTGNATATCAATTTT-CANC-GATTCTT----GCC--AA-TA-ATNTTATT-A-ACGTA-GACC--ACTCT-GG--ACATGGGC------CTGGA-AGGTAG--GCCTAGTTCA--AAGGAACTAGCCGCTA-GGCCTCAGTTA-----CTGCCCTC---GGAAT-CGCAGAATAAATTNTGAAAT-GTCTNAAGTT-ATAAAGAATAT--------GTAA-------TACTCGTATTAATTATTGATTTATCTATTGTCCTCGTTTCTTTCATTCCANTTTTCTTTCTC-TAAGATCC--CTAAATATAGCT---AAAT-----TTTCAAAATAGTGTATTCATGATGTCGTCACATNTNCATTCAAACGTCATTGAA----AAAGTT---ATATCAATTATGA-CGTCATAG---CT-AAAGA-----ACTGGTTTTG-TTTACTCCG-TCAT-TAGAATCATGTAGTCTTTTAGTGGTCCATATC-------CTCACACATTATTTAATTGAATTGAAAA--AT--TGTA--CA--TAATGA--AGTGTAAGCC------CCTATGCAT---------AAG-ACAAAAA-CTAC-ATA-TTG-TGGG--CAAACTTG-C-CTGA-AGTT-CAATATGTTGTG---GTCGGC---AAAGCTGTTT-ATATC-AA---GCTA-G--TT-ACATTTC-TTTNATAAC-TGCAAAAAGTCT-TAGCAAAAAACTTATT-CATT-GCAAATAAAAATAATGTA-GATCTACTG--AAATTTTCTT---GTT-ATCAAACC-AGCAACAAGTCT-A--ATTTCAGC-CAA-AA-GCTTG-TCAATN-TCATGATAAGG-CAA-GCTCATTATGC--A--TTCA----CTGANT-TTTAATTT-ACAA-TTCA--TTTT-TTCN-----ACCAAG-AATTAAG--AAACGAAGT-ACTGAATTAATTAAGAAACAAAGT-ACTAGAGA-GT-GTCTTCTGCTGCATNACA-----CAA--GTTGT-TT-CCTACA-CTA-A-AATGTGTTTCTAACTA---AAAAGAG-TTTC---A-GTAAGGG-AAATAACTTGTTAGAGATCAGCCATAAAC--TG-----GTACC---------CTGTTGACTCC---T----------------C-GCTTCTCTC---TTTGTTTNTAG-CCACCAATCAAC-GGGGTACCAGTTTAAAA-TCAGCC-TAAAAGTG-ATTTTTTT----GTATTTTCTATGGCCTCTTAT-AAAAGAAATATTCTTAAGCCCATTCTATAATTTTGAGAAATTGTAGGTCAAGTATATGTGC-T---T--TTTTTTCAAACAAAAGTAAAGAAATTCCTCAG--ACATTTTTT--A-AAATACAA-G-AGAAAAAGGGGGT-AATTATTTGCCATTTTTACTGAAAAA-CAGCCCT-AAAATGTTCTTTTTGNTACAATCTTA--AACATCTAAGTTTAAAA-AAAATCC-CCATACA-TCCGA-AC-TTTTTTTTTAAAAAGTGAAGTGTATGTCTAGTGCATTTAGAAATGTCTCCGNTGGGCCATT-TTCCTGTGGGGCCTATATTTTCATT
Reference ( family-1091 ) : GTTGCGATTTTGTTTTTGCATTTTCACATTTGACATTCAGTTCGGTACGTGNATATCAATTTT-CANC-GATTCTT----GCC--AA-TA-ATNTTATT-A-ACGTA-GACC--ACTCT-GG--ACATGGGC------CTGGA-AGGTAG--GCCTAGTTCA--AAGGAACTAGCCGCTA-GGCCTCAGTTA-----CTGCCCTC---GGAAT-CGCAGAATAAATTNTGAAAT-GTCTNAAGTT-ATAAAGAATAT--------GTAA-------TACTCGTATTAATTATTGATTTATCTATTGTCCTCGTTTCTTTCATTCCANTTTTCTTTCTC-TAAGATCC--CTAAATATAGCT---AAAT-----TTTCAAAATAGTGTATTCATGATGTCGTCACATNTNCATTCAAACGTCATTGAA----AAAGTT---ATATCAATTATGA-CGTCATAG---CT-AAAGA-----ACTGGTTTTG-TTTACTCCG-TCAT-TAGAATCATGTAGTCTTTTAGTGGTCCATATC-------CTCACATACTATTTAATTGAATTGAAAA--AT--TGTA--CA--TAATGA--AGTGTAAGCC------CCTATGCAT---------AAG-ACAAAAA-CTAC-ATA-TTG-TGGG--CAAACTTG-C-CTGA-AGTT-CAATATGTTGTG---GTCGGC---AAAGCTGTTT-ATATC-AA---GCTA-G--TT-ACATTTC-TTTNATAAC-TGCAAAAAGTCT-TAGCAAAAAACTTATT-CATT-GCAAATAAAAATAATGTA-GATCTACTG--AAATTTTCTT---GTT-ATCAAACC-AGCAACAAGTCT-A--ATTTCAGC-CAA-AA-GCTTG-TCAATN-TCATGATAAGG-CAA-GCTCATTATGC--A--TTCA----CTGANT-TTTAATTT-ACAA-TTCA--TTTT-TTCA-----ACCAAG-AATTAAG--AAACGAAGT-ACTGAATTAATTAAGAAACAAAGT-ACTAGAGA-GT-GTCTTCTGCTGCATTACA-----CAA--GTTGT-TT-CCTACA-CTA-A-AATGTGTTTCTAACTA---AAAAGAG-TTTC---A-GTAAGGG-AAATAACTTGTTAGAGATCAGCCATAAAC--TG-----GTACC---------CTGTTGACTCC---T----------------C-TCTTCTCTC---TTTGTTTNTAG-CCACCAATCAAC-GGGGTACCAGTTTAAAA-TCAGCC-TAAAAGTG-ATTTTTTT----GTATTNTCTATGGCCTCTTAT-AAAAGAAATATTCTTAAGCCCATTCTATAATTTTGAGAAATTGTAGGTCAAGTATATGTGC-T---T--TTTTTTCAAACAAAAGTAAAGAAATTCCTCAG--ACATTTTTT--A-AAATACAA-G-AGAAAAAGGGGGT-AATTATTTGCCATTTTTACTGAAAAA-CAGCCCT-AAAATGTTCTTTTTGNTACAATCTTA--AACATCTAAGTTTAAAA-AAAATCC-CCATACA-TCCGA-AC-TTTTTTTTTAAAAAGTGAAGTGTATGTCTAGTGCATTTAGAAATGTCTCCGNTGGGCCATT-TTCCTGTGGGGCCTATATTTTCATT
gi|1 : GTTGCGATTTTCTTTTT-CATTTTCACATTTAACATTCAGTTCGGTACGTGCATATCAATTGT-CAGT-GATTTTT----GCC--AA-TA-ACTTTACTGA-AC-TA-GACC--ACTCT-GA--ATATGGAC------TTGGA-AGGTAG--GCCTAGTTCA--AAAGAACTAGCCGCTA-GGCCTCAGTTA-----CTGCCCTC---GGAAT-GGCAGAATGAATTATAAAAT-GTCTTAAGTT-GTAAAGAATAT--------GTAA-------TACTCATATTAATTATTGATTTATCTATTGTCCTCGTTTCTTTCATTCTAATTTTCTTTCTC-GAAGATCC--CTGAATACAGCT---AAA------TTTCAAAATAGTGTATTCATGATGTCGTCACAAGTATACTCAAACGTCATTG------AAAGTC---ATATCAATTATGA-CGTCATAG---CT-AAAGA-----ACTGGTGTTG-TTTTCTCCA-TCAT-TAGAATCATGTAGTCTTTTAGTGGTCCATATC-------TTCACATACCATCTGATTGAATTGAAAT--ATAGTGTA--CA--TAATGA--AGTGTAAGCC------CCTATGCAT---------CAG-ACGAAAA-CTAC-ATA-TTG-TGGA--CAAACTTG-C-CTGA-AGTT-CAATATGTTGTG---GTTGGC---AAAGCTGCTT-ATATC-AA---GCTA-G--TT-ACATTTC-TTTGATAAC-TACAAAAAGTCT-GTGC-AAAAACGTATT-CATT-GCAAATAAAAATAATGCA-GATCTACTG--ATATTTTCTT---GTT-ATCAAACC-AGCAACAAGTCC-A--ATTTCAGC-CAA-AA-GCTTG-TCAATT-TCATGATAAGG-CAA-GCTCATTATGCAAA--TTTA----CTGAAT-TTTAATCT-ACAA-TTAA--TTTTATTCA-----A-CATG-AATTAAG--AAACAAAGT-ACTGAATCAATTAAGAAACAAAGT-ACTAGAGA-TT-GTCTTCTGCTGCATGACA-----CAA--GTTGTCTT-CCTACA-CTA-A-AATGTGTTTCTAACTT---AAAAGAG-TTTC---A-GTATGGG-AAATAACTTGGTAGAGATCAGCC-CAAAC--TG-----GTACC---------CTGTTGACTCC---TTTTTTCCCTTTTGACTC-TTTTCTCTT---TTTGTTTTTAG--CACAAATCAAT-GGGGTGCCAGTTTAAAA-TCAGCC-TAAAAGTG-ATTTTTTT----GTATTGTCTATGGCTTCTTGT-AAAAGAAATATTCTTAAGCCCATTCTATATTTTTGAGAAATTGTAGATCAAGTATATGTG------T--TTTTTTCAAACAAAAGTAA-----------AG--ACATGTTTTA-A-AAATACAATG-AGAGAAAGGAGGT-AATTATTTGCCATTTTTATTGAAAA-------CT-AAAATTTTTTTTTTGTTACAATCTTA--AACATCTAAGTTAAAAA-AAAATCC-CTATACA-TCCCA-TC-TATTTTTTTAAAAAGTGAAATGTATATCTAGTGTATTTATAAATGTCTCCATTGGGCTATG-TTCCTGTGGAGACTATATTTTCATT
gi|10 : ACAGTGAGTTGGG---GTTTATCTCAATTTTTCAACTGACTCTTACATGCCCAAA-TAGATTTTATT-GCAC-TATGGCCTTACTTTTGG--ACATGGGA------CTGCA-AAGTGGTTGTCT--TTGACTAAGTAACTCGCCGCTAGGGCCTT--TTA-----TTGCTCTCGCAGGAA----CTGAA-AAATTTTTAAATAGTCTC-AGTTAATAAAGAATA
gi|11 : ATTGGACATTCAGTTTGGTGTCTGGATATCACATTC-CATC-TATCCTT----ATC--AATTA-ATGTTATT-T-ATGTA-GACC--GCTTT-TG--ACATTGA-------CTGGATATATAG--TTCCACTT------GGAA--AGCTGATA-GGCTTGATATA-----CAGCCCCC---TGAATCCCCAAAACAAATT-----AT-ATCC--AGTT-TTAAATAATAT--------
gi|13 : tTGTTTTTGCATTTTCATATTTAACATTCAGTTCGGTACGTGAATATCA
gi|15 : tatttagtatgttggttcattacttgaatgAAAC--TG-----GTATC---------CTGTTGGCT-C---T----------------C-GCTTCTCTCAAGTTTGCGTGTAG--CACCAATCAATGGGGGTACCAG
gi|16 : AC--TG-----GTACC---------CTGTTGACTTC---G----------------CATCTCTTATG---TTTGTGTGTAG-CCACCGATCAGC-GGGGTACCAGT
gi|17 : AAC--TG-----GTACC---------CTGTTGACTTCACAT----------------C-TCTTATGTT---TCTGT--GTAG-CCACCAATCAGT-GGGGTACCA
gi|18 : t---TTTGTGTGTAG-C-ACCAATCAAC-GAGGTACC
gi|19 : ctcaagAAC--TG-----ATATC---------CTGTTGGCT-C---T----------------C-GCTTGTCTC---T
gi|2 : GAACACAATCCAAAAT-GTCTAAAGTT-GTAAAGAATAT--------GTAA-------CAATCGTATTAATC--T-ATTTATTTATTGTCCTCGTTTCTTTCCTTCCATTTTTCTTTCTC-T----TTCTACTAAATGTATTT---AAAT-----TTTCAAAATAGTGTATTCATGATGTTGTCACATTTCCATTCTAACGTCATTGAA----A--GTT---ATATCAATTATGA-CGTCATAG---CT-CAAGA-----ACTGGTTTTG-TTTAATCCG-TCAT-TAGAATCATGTAGTCTTTTAGTGATCCATATCCTCTTATCTCACACATTATTTAATTGAATTGAAAAACAT--TGTA--CA--TAATGA--AGTGTAAGCC------CCTATCCAT---------AAG-ACAAAAA-CTA--ATA-TTT-TAGG---AAACGTG-C-CTTA-AGTT-AACCA---TATG---GTCGGC---AAAAC-------TATC-AA---ACTA-G--CT-AGATTTC-TTTGACAAA-TACAAAAAGTCT-TAATAAAAAA---ATT-CATT-GGAAATGAAAATACTGTA-GATCTACTG--AAGTTCTCTT---GTT-ATAAAACG-ATCAGCAAGTCTAA--ATTTCAGT-CAA-AA-GCTTG-TCAATA-GCAAGATAAGG-CAA-GTTCATTATGC--ATTTTCA----CTGAAT-CTAAATTT-ACAA-TTCA--TCTT-TTTA-----ATCAAG-AATTAAG--AAATGAAGT-ACTAAATTAATTAAAAAACAAAGT-ACTACATA-GT-GTCTCCTGCTACAGTACATGTCTCAA--TTTGT-TTACCTACA-CT--A-AATTTGTTTCTAACTA---AAACGAG-TTAC---A-GTAAGGA-AAATAAGTTGTTAGATATCAACC-TAAAC--TG-----GTACT---------ATGTTGA------------------------A-TCTTGCGTC---TTT-TTTTTAG--CACCAACCAAC-TGGGTAACAGTTTAAAA-TCAGCCTTAAAAGTGAAATTTTCT----ATATTTTTGATAGCCTCTTATGAAAAAAGGTATTCCTACGCACATTCTATAATTTTGAGATACTGTAAGTCAAACATATGTGCAT---C--TTTTTTTAAAT-AAAGTAAAGGAATTCCTCAG--ACATTATTC----AAATACAAGG-AGAAAAAAAAG-------------------------AAAC-CAGCCCT-AAAATGTTCTTTTTGTAACAATATTA--Aagt
gi|20 : cattAC--TG-----GTATC---------CTGTTGGCT-C---T----------------C-GCTTCTCTC---
gi|21 : AC--TG-----GTACC---------CTGTTGA---C---T----------------C-GCTTCTCTC---gagt
gi|3 : TAG---CTGAAAGA-----ACTG---TTGCTTTACTCAG-TCATGTAGAATCATGTAG-CTTTT----------------------CACATA--------TTGAATTGAAAA---T--TGTAATTA--TAATGACTGGTGTAAGCC------A--ATGCACCTTTCACTCAAGCACAAAAAACTACTATAATTG-TAAG--CAA--TTGACACTGACAGTTTCAA-ATGTTA-----GTCGGTGCAAAAGCTGTTT-ATATC-AATTAGCTACGACTT-ACATTTCGTTTCATAAC-TGCAAAAAGTCTATAGCAAAAAACTTATT-CAT--GCAAATAAAAATAATGTA--ATCTACTG--AAATTTTCTTAAAGGT-ATCAAACCGAGCAACA-GTCT-A--ATTTCAGC-CAA-AAAGCTTG-TCAATCATCATGA--AGG-CAAAGCTC--CAT----A--TTCAAATTCTGACT-TTTTATTTTACAACTTTA--TGTC-TTCCTGTTCACCA-G-AATAATG--AAAC-AAG--ACTGAATTGAATAAGAAACAAAGT-ACTAGAGA-GT-GCTTTCTCGAGCATT-CA-----AAA--GTTGT-TT-CCTACA-CTATACAAGGT-TTTCTAACTATTAAAAAGAGGTTTC---ACGTAAGGG-AAATG-------------CAGCAATAAAC--TGTACATGTACC---------CTGTGGACTCC---T----------------C-GTCTCTTTC---TTTGTTTTTAG-C-ACAAATCAAT-GGG-TACCAGTTTAAAA-TCAGCC-TAAAAATG-ATTTTTTTTTTGGTATTCTCTATGGCCTCTTAT-AAAAGAAATATGCTTGAGCCCATTCTATAATTTTGAGAAGTTGTAGGTCAAGTATATGTGC-T---TCATTTTTTAAAACAAAAGTAAAGAAATTCTTCAG--ACATTTTTT--TTAAATACAA-GCAGAAAAAGGGG-T-AATTATTTGACATTTTTACTGAAAAA-CAACCCT-ACAATGTGCTTTTTGATACAATCTTA--AACATGTAAGTTTAAAA-AAAA----ACATACA-TCCGA-AC-TTTTTTTCTTAAAAGTGAAGTGTATGTCTAGTGCATCTAGAAA--TTTCCGTTGG--CATTGTCCCTGT-GGGCCTATGTTTTCATaagt
gi|4 : TT-CAATATGTTGTGTCCATCGGC---AAAGCTGTTTTATATCTAA---GCTA-G--TTTACATTTC-TTTCATAACCTGCAAAAAGTCT-TAGCAAAAAACTTATTACATTCGTAAAT-AAGATAATGTAGGATCTACTGCCAAATTATCTT---ATTAATC-AACC-TGCAACAAGTCT-AATATCTCAGCACAAGAA-GCCTGTTCAAAG-TAATTATAAGGCCAA-GCTCATTATGC--A--CTCA----CTGACTATTTAATTA-GCAA-TTCATCTTTT-TTCC-----ACCAAATAATTAAGAAAAACAAAGTAACTGAATTAATTAAGAAACAAAGGAACTAGAGACGTGGTCTT-TGCTGCATGTCA-----CAAGGGCTGT-TT-ACTACATCCA-A-AATGTGTTTCTAACTA---TCAAGAG-TTTCCATG-GTAAGGGAAAATAACTTGTTAGAG-TCAG-CATAACCAGTG-----GTACCAGGCCCACACTGTTGACTC---------------------T-TGTTCTCTT---CTTGTTTTGAGTTCA-AAATCAAT-GGGGGACCAGTTTAAAAGTCAGCC-TCAAAGT---TTTTTTT-------TTTTTT--------------AAAGAAATTTTCTTTACCCAATTCTATAATGTT-AGAG---------CAAGTATATGTGC-TTCAT--TTTTTTCAAACAAAAGTAACGAAATTCCTCAGAAACATTTTTTTAA-AAATACA----AGCAAAAGGGGGTAAATTATTTGCCAATTTTTCTGAAAAATCAGCCCTAAAAATGTT-TTTTTGCTACAATCTTACCAATATA-AAGTTTAAAAGAAAATCCGCCATTCATTCCGACACTTTTTTTTTTTTAAAGTGAAATGTATGTCTAGattg
gi|5 : GTTGCGATTTTGTTTTTACATTTTCACATTTGACGTTCAGTTCGATACGTGCATATCAATTTT-CACT-GATTTTT----GCC--AA-TA-GTGTTATT-A-ACATA-GACT--ATTCT-GGTTATATGGGCTGGGACCCGGA-GGGTAG--GCCTAGTTCA--AATGGACTAGCCGCTA-GGCCTCAGTTA-----CTGCCCTC---AGAAT-CGCAGAATAAAGTATGAAAT-GTCTAAAGTT-ATAAAGAATAT--------GTAA-------TACTCGTATTAATTATTGATTTATTTATTATCCTTGTTTCTTCCATACCAGTTTTCTTTCTC-TAAGATCC--CCAAATATAGCT---
gi|6 : tatttagcgagttggtttCCT-AAAATGTTCTTTTTGATACAATCTTT--ATCATCTAAGTTTAGAT-AAAATCC-CCATCCA-TCCGA-AC-TTTTTTTTAAAAAAATGAAGTGTATATCTAGTGCATTTAGAAATGTTTCCAGTGGGCTATT-TTCCTGTGGGGCCTATATTTTCAT
gi|7 : TCTTA--AACATCTAAGTTAAAAA-AAAATCC-CCTTACA-TTCGA-AC-TTTTATTTTAAAAAGTGAAGTGTATGTCTAGTACATTTAGAAATGTCTCATGTGAGCCATT-TTTCTGTGGGGCCTATATTTTCATgttttgctttatttgactggtgtttccatgacaacagctaagaatataatttttatatacaacttattttaatactaaataggcaaacatgaagaaaatattacttgtaggagaatatcaaacaacccatttccagcaatttttggtccctacagataatcag
gi|8 : CTA-G-CCTTAATTGATATGCTGCCCTC---TGAAT-CACAGAATAAATTCTGAAAT-GTCTCAAGTT-ATAAAGAACATTTCAAGAGGTGACTCAACATACTAGCAGTTATTATTGAAATATCTTTT---CTCATTACTTTAATTTCACTTTTCTATCTCGTATAATCT--CTAAATA--GCTTGCAAATGTAGATTTTAGAATAGTGTATTCATGATGT-----CATATTCATTCAGACGTCATTGAATTTCAAAGTT---A-ATCAATTATGA-CGGCATAGTTTCC-AACGA-----TCTGGTgttttgctttatttgactggtgtttccatgacaacagctaggaatataatttttatatacaacttattttaatgctaaataggcatacttgaagaaaatattacttgaaggataataccaaacatcccatttccagcaaattttggtcctaacagataatcagtgt
gi|9 : AAGTTTCAATATCAATTATGAACGTCATAG---CT-AAGAACTGCAACTGGTTTTG-TTTACTCCGCTCAT-TAGAATCATGTAGTTTTTT-----TTCACAT-----------ATACATTATTTAATTGAA-TGAAAAT-AT--TGTA--CAATTAAT-A--AGTGTAAGCCCTAATGCCTATGCAT---------AAG-ACAACAA-TT---ATA-TTGCTGGGCCCAAACTTG-C-CT
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|12 ): TGTATTTTCATGTTTTGCTTTATTTGATTGGTGTTTCCATGACAACAGCTATAGATACATATATGTAGGAATTTTTATATACAACTTATTTTAATACTAAATAGGCATACTTGAGAATTACTCGTAGGAGAATATCAAACATC
Unaligned ( gi|14 ): GGAGACTATATTTTCATTTGTGAGAATATGAAACATTCCATTTCCAGCAAATTTTGGTCCTTACAGATAATCAGTGT
Alignments
lowQualScore : 1 1 1 2222 11 1 1 222222 1 11 11111 3333333 1 11 1111 22222 1111 1111 11 22222222 3333333 11111 11 111 444444 1 333333 111 1 111 22222 1 1 1 66666666666666666666666 333333 11 11 11 222222 444444444 1 1 222 1 1 111 1 1 1 1 111 111 1 1 111 1 11 1 1 1 1 1 11 11 11 111 1 1 1 11 1 1 1 1 11 1 1 11111 2222 1 1 1 111 1 222222 111 1111 1 1 1 1 11 22222 11 1 1 1 1111 111 1 22222 1 11 22 11111 111111111 44444444444444444 2222 111 1 1 11 22222 1 3333333 11 4444 2 1 11111 11 1
lowQualScore : 2 0 1 0 1 0 1111 33 0 0 1 555555 0 33 44444 7777777 0 0 33 55 9999 0 2 8 555 00000 7777 2222 4 888 6 00 77 99999999 2222222 3 2 6 1 44444 33 7 777 000000 2 1 1 444444 3 777 3 0 444 8 00000 3 0 0 0 3 88888888888888888888888 7 0 0 3 111111 33 33 2 33 888888 2 000000000 0 0 222 0 0 666 3 0 0 3 0 7 3 3 777 777 3 0 0 0 777 0 33 0 0 1 0 0 3 55 0 33 0 3 22 33 1 777 0 3 0 3 0 33 0 0 0 0 11 3 0 0 3 2 88888 1111 1 0 0 0 0 444 0 666666 6 333 8888 3 0 0 0 0 2 00 55555 33 0 0 0 4444 2 777 0 22222 0 55 3 11 44 55 00000 666666666 99999999999999999 0 0000 3 1 888 2 5 0 0 22 77777 0 33 0 0 0 1 2 999 00 5555555 0 3 9 0 0 33 3333 0 0 2 66666 2 3 33 99 0 8 3 1 99 0 1 8 0 8 1 8 8 8 1 3 55 2 0 2
lowQualScore : . . . . . . .... .. . . . ...... . .. ..... ....... . . .. .. .... . . . ... ..... .... .... . ... . .. .. ........ ....... . . . . ..... .. . ... ...... . . . ...... . ... . . ... . ..... . . . . . ....................... . . . . ...... .. .. . .. ...... . ......... . . ... . . ... . . . . . . . . ... ... . . . . ... . .. . . . . . . .. . .. . . .. .. . ... . . . . . .. . . . . .. . . . . . ..... .... . . . . . ... . ...... . ... .... . . . . . . .. ..... .. . . . .... . ... . ..... . .. . .. .. .. ..... ......... ................. . .... . . ... . . . . .. ..... . .. . . . . . ... .. ....... . . . . . .. .... . . . ..... . . .. .. . . . . .. . . . . . . . . . . . .. . . .
lowQualScore : 0 8 0 0 0 0 2222 88 0 0 0 222222 0 88 00000 5555555 0 2 88 88 5555 2 5 0 444 00000 2222 0000 2 777 7 77 00 00000000 5555555 2 5 5 0 00000 88 0 555 777777 0 0 0 777777 2 555 2 0 000 0 00000 0 0 0 0 2 55555555555555555555555 0 8 8 2 888888 88 88 5 88 888888 5 000000000 0 0 000 0 0 222 2 0 0 3 0 0 2 2 555 555 2 8 0 0 555 0 88 0 0 0 0 0 2 55 0 22 2 2 55 88 2 555 0 2 0 2 0 88 0 0 0 0 00 2 0 0 2 5 55555 2222 0 0 0 0 2 555 0 000000 5 888 2222 2 0 0 0 0 5 88 00000 88 0 0 0 2222 5 555 0 22222 0 88 0 88 22 55 00000 000000000 00000000000000000 1 5555 0 0 222 5 0 0 0 55 88888 8 55 2 8 0 2 5 000 55 5555555 2 2 2 8 2 88 5555 0 0 5 00000 5 5 88 22 2 0 2 0 22 8 4 0 8 0 0 0 0 0 4 2 22 5 0 5
consensus : GTTGCGATTTTGTTTTTGCATTTTCACATTTGACATTCAGTTCGGTACGTGNATATCAATTTT-CANC-GATTCTT----GCC--AA-TA-ATNTTATT-A-ACGTA-GACC--ACTCT-GG--ACATGGGC------CTGGA-AGGTAG--GCCTAGTTCA--AAGGAACTAGCCGCTA-GGCCTCAGTTA-----CTGCCCTC---GGAAT-CGCAGAATAAATTNTGAAAT-GTCTNAAGTT-ATAAAGAATAT--------GTAA-------TACTCGTATTAATTATTGATTTATCTATTGTCCTCGTTTCTTTCATTCCANTTTTCTTTCTC-TAAGATCC--CTAAATATAGCT---AAAT-----TTTCAAAATAGTGTATTCATGATGTCGTCACATNTNCATTCAAACGTCATTGAA----AAAGTT---ATATCAATTATGA-CGTCATAG---CT-AAAGA-----ACTGGTTTTG-TTTACTCCG-TCAT-TAGAATCATGTAGTCTTTTAGTGGTCCATATC-------CTCACACATTATTTAATTGAATTGAAAA--AT--TGTA--CA--TAATGA--AGTGTAAGCC------CCTATGCAT---------AAG-ACAAAAA-CTAC-ATA-TTG-TGGG--CAAACTTG-C-CTGA-AGTT-CAATATGTTGTG---GTCGGC---AAAGCTGTTT-ATATC-AA---GCTA-G--TT-ACATTTC-TTTNATAAC-TGCAAAAAGTCT-TAGCAAAAAACTTATT-CATT-GCAAATAAAAATAATGTAG-ATCTACTG--AAATTTTCTT---GTTA-TCAAACC-AGCAACAAGTCT-AAT--TTCAGC-CAA-AA-GCTTGT-CAATN-TCATGATAAGGC-AA-GCTCATTATGC--A--TTCA----CTGANT-TTTAATTT-ACAA-TTCAT--TTT-TTCN-----ACCAAG-AATTAAGAAA--CGAAGTA-CTGAATTAATTAAGAAACAAAGTA-CTAGAGA-GTG-TCTTCTGCTGCATNACA-----CAAG--TTGT-TT-CCTACA-CTA-A-AATGTGTTTCTAACTA---AAAAGAG-TTTC---A-GTAAGGGAAA-TAACTTGTTAGAGATCAGCCATAAAC--TG-----GTACC---------CTGTTGACT-----------------CTCGCTTCTCTC---TTTGTNTNTAGC-CACCAATCAAC-GGGGTACCAGTTTAAAA-TCAGCC-TAAAAGTG-ATTTTTTT----GTATTTTCTATGGCCTCTTAT-AAAAGAAATATTCTTAAGCCCATTCTATAATTTTGAGAAATTGTAGGTCAAGTATATGTGC-TTCA-TTTTTTCAAACAAAAGTAAAGAAATTCCTCAGA--CATTTTTT--A-AAATACAA-G-AGAAAAAGGGGGTAA-TTATTTGCCATTTTTACTGAAAAA-CAGCCCT-AAAATGTTCTTTTTGNTACAATCTTA--AACATCTAAGTTTAAAA-AAAATCC-CCATACA-TCCGA-AC-TTTTTTTTTAAAAAGTGAAGTGTATGTCTAGTGCATTTAGAAATGTCTCCGNTGGGCCATT-TTCCTGTGGGGCCTATATTTTCATT
Reference ( family-1091 ) : GTTGCGATTTTGTTTTTGCATTTTCACATTTGACATTCAGTTCGGTACGTGNATATCAATTTT-CANC-GATTCTT----GCC--AA-TA-ATNTTATT-A-ACGTA-GACC--ACTCT-GG--ACATGGGC------CTGGA-AGGTAG--GCCTAGTTCA--AAGGAACTAGCCGCTA-GGCCTCAGTTA-----CTGCCCTC---GGAAT-CGCAGAATAAATTNTGAAAT-GTCTNAAGTT-ATAAAGAATAT--------GTAA-------TACTCGTATTAATTATTGATTTATCTATTGTCCTCGTTTCTTTCATTCCANTTTTCTTTCTC-TAAGATCC--CTAAATATAGCT---AAAT-----TTTCAAAATAGTGTATTCATGATGTCGTCACATNTNCATTCAAACGTCATTGAA----AAAGTT---ATATCAATTATGA-CGTCATAG---CT-AAAGA-----ACTGGTTTTG-TTTACTCCG-TCAT-TAGAATCATGTAGTCTTTTAGTGGTCCATATC-------CTCACACATTATTTAATTGAATTGAAAA--AT--TGTA--CA--TAATGA--AGTGTAAGCC------CCTATGCAT---------AAG-ACAAAAA-CTAC-ATA-TTG-TGGG--CAAACTTG-C-CTGA-AGTT-CAATATGTTGTG---GTCGGC---AAAGCTGTTT-ATATC-AA---GCTA-G--TT-ACATTTC-TTTNATAAC-TGCAAAAAGTCT-TAGCAAAAAACTTATT-CATT-GCAAATAAAAATAATGTAG-ATCTACTG--AAATTTTCTT---GTTA-TCAAACC-AGCAACAAGTCT-AAT--TTCAGC-CAA-AA-GCTTGT-CAATN-TCATGATAAGGC-AA-GCTCATTATGC--A--TTCA----CTGANT-TTTAATTT-ACAA-TTCAT--TTT-TTCN-----ACCAAG-AATTAAGAAA--CGAAGTA-CTGAATTAATTAAGAAACAAAGTA-CTAGAGA-GTG-TCTTCTGCTGCATNACA-----CAAG--TTGT-TT-CCTACA-CTA-A-AATGTGTTTCTAACTA---AAAAGAG-TTTC---A-GTAAGGGAAA-TAACTTGTTAGAGATCAGCCATAAAC--TG-----GTACC---------CTGTTGACTC----------------CTCGCTTCTCTC---TTTGTTTNTAGC-CACCAATCAAC-GGGGTACCAGTTTAAAA-TCAGCC-TAAAAGTG-ATTTTTTT----GTATTTTCTATGGCCTCTTAT-AAAAGAAATATTCTTAAGCCCATTCTATAATTTTGAGAAATTGTAGGTCAAGTATATGTGC-TT---TTTTTTCAAACAAAAGTAAAGAAATTCCTCAGA--CATTTTTT--A-AAATACAA-G-AGAAAAAGGGGGTAA-TTATTTGCCATTTTTACTGAAAAA-CAGCCCT-AAAATGTTCTTTTTGNTACAATCTTA--AACATCTAAGTTTAAAA-AAAATCC-CCATACA-TCCGA-AC-TTTTTTTTTAAAAAGTGAAGTGTATGTCTAGTGCATTTAGAAATGTCTCCGNTGGGCCATT-TTCCTGTGGGGCCTATATTTTCATT
gi|1 : GTTGCGATTTTCTTTTT-CATTTTCACATTTAACATTCAGTTCGGTACGTGCATATCAATTGT-CAGT-GATTTTT----GCC--AA-TA-ACTTTACTGA-AC-TA-GACC--ACTCT-GA--ATATGGAC------TTGGA-AGGTAG--GCCTAGTTCA--AAAGAACTAGCCGCTA-GGCCTCAGTTA-----CTGCCCTC---GGAAT-GGCAGAATGAATTATAAAAT-GTCTTAAGTT-GTAAAGAATAT--------GTAA-------TACTCATATTAATTATTGATTTATCTATTGTCCTCGTTTCTTTCATTCTAATTTTCTTTCTC-GAAGATCC--CTGAATACAGCT---AAA------TTTCAAAATAGTGTATTCATGATGTCGTCACAAGTATACTCAAACGTCATTG------AAAGTC---ATATCAATTATGA-CGTCATAG---CT-AAAGA-----ACTGGTGTTG-TTTTCTCCA-TCAT-TAGAATCATGTAGTCTTTTAGTGGTCCATATC-------TTCACATACCATCTGATTGAATTGAAAT--ATAGTGTA--CA--TAATGA--AGTGTAAGCC------CCTATGCAT---------CAG-ACGAAAA-CTAC-ATA-TTG-TGGA--CAAACTTG-C-CTGA-AGTT-CAATATGTTGTG---GTTGGC---AAAGCTGCTT-ATATC-AA---GCTA-G--TT-ACATTTC-TTTGATAAC-TACAAAAAGTCT-GTGC-AAAAACGTATT-CATT-GCAAATAAAAATAATGCAG-ATCTACTG--ATATTTTCTT---GTTA-TCAAACC-AGCAACAAGTCC-AAT--TTCAGC-CAA-AA-GCTTGT-CAATT-TCATGATAAGGC-AA-GCTCATTATGCAAA--TTTA----CTGAAT-TTTAATCT-ACAA-TTAAT--TTTATTCA-----A-CATG-AATTAAGAAA--CAAAGTA-CTGAATCAATTAAGAAACAAAGTA-CTAGAGA-TTG-TCTTCTGCTGCATGACA-----CAAG--TTGTCTT-CCTACA-CTA-A-AATGTGTTTCTAACTT---AAAAGAG-TTTC---A-GTATGGGAAA-TAACTTGGTAGAGATCAGCC-CAAAC--TG-----GTACC---------CTGTTGACTCCTTTTTTCCCTTTTGACTCTTTTCTCTT---TTTGTTTTTAG--CACAAATCAAT-GGGGTGCCAGTTTAAAA-TCAGCC-TAAAAGTG-ATTTTTTT----GTATTGTCTATGGCTTCTTGT-AAAAGAAATATTCTTAAGCCCATTCTATATTTTTGAGAAATTGTAGATCAAGTATATGTG---T---TTTTTTCAAACAAAAGTAA-----------AGA--CATGTTTTA-A-AAATACAATG-AGAGAAAGGAGGTAA-TTATTTGCCATTTTTATTGAAAA-------CT-AAAATTTTTTTTTTGTTACAATCTTA--AACATCTAAGTTAAAAA-AAAATCC-CTATACA-TCCCA-TC-TATTTTTTTAAAAAGTGAAATGTATATCTAGTGTATTTATAAATGTCTCCATTGGGCTATG-TTCCTGTGGAGACTATATTTTCATT
gi|10 : ACAGTGAGTTGGG---GTTTATCTCAATTTTTCAACTGACTCTTACATGCCCAAA-TAGATTTTATT-GCAC-TATGGCCTTACTTTTGG--ACATGGGA------CTGCA-AAGTGGTTGTCT--TTGACTAAGTAACTCGCCGCTAGGGCCTT--TTA-----TTGCTCTCGCAGGAA----CTGAA-AAATTTTTAAATAGTCTC-AGTTAATAAAGAATA
gi|11 : ATTGGACATTCAGTTTGGTGTCTGGATATCACATTC-CATC-TATCCTT----ATC--AATTA-ATGTTATT-T-ATGTA-GACC--GCTTT-TG--ACATTGA-------CTGGATATATAG--TTCCACTT------GGAA--AGCTGATA-GGCTTGATATA-----CAGCCCCC---TGAATCCCCAAAACAAATT-----AT-ATCC--AGTT-TTAAATAATAT--------
gi|13 : tTGTTTTTGCATTTTCATATTTAACATTCAGTTCGGTACGTGAATATCA
gi|15 : tatttagtatgttggttcattacttgaatgAAAC--TG-----GTATC---------CTGTTGGCT-----------------CTCGCTTCTCTCAAGTTTGCGTGTAG--CACCAATCAATGGGGGTACCAG
gi|16 : AC--TG-----GTACC---------CTGTTGACT------------------TCGCATCTCTTATGTTTGTGTGTAGC-CACCGATCAGC-GGGGTACCAGT
gi|17 : AAC--TG-----GTACC---------CTGTTGACT------------------TCACATCTCTTATGTTTCTGTGTAGC-CACCAATCAGT-GGGGTACCA
gi|18 : t---TTTGTGTGTAGC--ACCAATCAAC-GAGGTACC
gi|19 : ctcaagAAC--TG-----ATATC---------CTGTTGGCT-----------------CTCGCTTGTCTC---T
gi|2 : GAACACAATCCAAAAT-GTCTAAAGTT-GTAAAGAATAT--------GTAA-------CAATCGTATTAATC--T-ATTTATTTATTGTCCTCGTTTCTTTCCTTCCATTTTTCTTTCTC-T----TTCTACTAAATGTATTT---AAAT-----TTTCAAAATAGTGTATTCATGATGTTGTCACATTTCCATTCTAACGTCATTGAA----A--GTT---ATATCAATTATGA-CGTCATAG---CT-CAAGA-----ACTGGTTTTG-TTTAATCCG-TCAT-TAGAATCATGTAGTCTTTTAGTGATCCATATCCTCTTATCTCACACATTATTTAATTGAATTGAAAAACAT--TGTA--CA--TAATGA--AGTGTAAGCC------CCTATCCAT---------AAG-ACAAAAA-CTA--ATA-TTT-TAGG---AAACGTG-C-CTTA-AGTT-AACCA---TATG---GTCGGC---AAAAC-------TATC-AA---ACTA-G--CT-AGATTTC-TTTGACAAA-TACAAAAAGTCT-TAATAAAAAA---ATT-CATT-GGAAATGAAAATACTGTAG-ATCTACTG--AAGTTCTCTT---GTTA-TAAAACG-ATCAGCAAGTCTAAAT--TTCAGT-CAA-AA-GCTTGT-CAATA-GCAAGATAAGGC-AA-GTTCATTATGC--ATTTTCA----CTGAAT-CTAAATTT-ACAA-TTCAT--CTT-TTTA-----ATCAAG-AATTAAGAAA--TGAAGTA-CTAAATTAATTAAAAAACAAAGTA-CTACATA-GTG-TCTCCTGCTACAGTACATGTCTCAAT--TTGT-TTACCTACA-CT--A-AATTTGTTTCTAACTA---AAACGAG-TTAC---A-GTAAGGAAAA-TAAGTTGTTAGATATCAACC-TAAAC--TG-----GTACT---------ATGTTGAAT-----------------CTTGCGTCTTT--------TTTTTAG--CACCAACCAAC-TGGGTAACAGTTTAAAA-TCAGCCTTAAAAGTGAAATTTTCT----ATATTTTTGATAGCCTCTTATGAAAAAAGGTATTCCTACGCACATTCTATAATTTTGAGATACTGTAAGTCAAACATATGTGCATC---TTTTTTTAAAT-AAAGTAAAGGAATTCCTCAGA--CATTATTC----AAATACAAGG-AGAAAAAAAAG-------------------------AAAC-CAGCCCT-AAAATGTTCTTTTTGTAACAATATTA--Aagt
gi|20 : cattAC--TG-----GTATC---------CTGTTGGCT-----------------CTCGCTTCTCTC---
gi|21 : AC--TG-----GTACC---------CTGTTGA-------------------CTCGCTTCTCTC---gagt
gi|3 : TAG---CTGAAAGA-----ACTG---TTGCTTTACTCAG-TCATGTAGAATCATGTAG-CTTTT------------------------CACAT------ATTGAATTGAAAA---T--TGTAATTA--TAATGACTGGTGTAAGCC------A--ATGCACCTTTCACTCAAGCACAAAAAACTACTATAATTG-TAAG--CAA--TTGACACTGACAGTTTCAA-ATGTTA-----GTCGGTGCAAAAGCTGTTT-ATATC-AATTAGCTACGACTT-ACATTTCGTTTCATAAC-TGCAAAAAGTCTATAGCAAAAAACTTATT-CAT--GCAAATAAAAATAATGTA--ATCTACTG--AAATTTTCTTAAAGGTA-TCAAACCGAGCAACA-GTCT-AAT--TTCAGC-CAA-AAAGCTTGT-CAATCATCATGA--AGGC-AAAGCTC--CAT----A--TTCAAATTCTGACT-TTTTATTTTACAACTTTAT--GTC-TTCCTGTTCACCA-G-AATAATGAAA--C-AAG-A-CTGAATTGAATAAGAAACAAAGTA-CTAGAGA-GTG-CTTTCTCGAGCATT-CA-----AAAG--TTGT-TT-CCTACA-CTATACAAGGT-TTTCTAACTATTAAAAAGAGGTTTC---ACGTAAGGGAAA-TG-------------CAGCAATAAAC--TGTACATGTACC---------CTGTGGACTC----------------CTCGTCTCTTTC---TTTGTTTTTAGC--ACAAATCAAT-GGG-TACCAGTTTAAAA-TCAGCC-TAAAAATG-ATTTTTTTTTTGGTATTCTCTATGGCCTCTTAT-AAAAGAAATATGCTTGAGCCCATTCTATAATTTTGAGAAGTTGTAGGTCAAGTATATGTGC-TTCA-TTTTTTAAAACAAAAGTAAAGAAATTCTTCAGA--CATTTTTT--TTAAATACAA-GCAGAAAAAGGGG-TAA-TTATTTGACATTTTTACTGAAAAA-CAACCCT-ACAATGTGCTTTTTGATACAATCTTA--AACATGTAAGTTTAAAA-AAAA----ACATACA-TCCGA-AC-TTTTTTTCTTAAAAGTGAAGTGTATGTCTAGTGCATCTAGAAA--TTTCCGTTGG--CATTGTCCCTGT-GGGCCTATGTTTTCATaagt
gi|4 : TT-CAATATGTTGTGTCCATCGGC---AAAGCTGTTTTATATCTAA---GCTA-G--TTTACATTTC-TTTCATAACCTGCAAAAAGTCT-TAGCAAAAAACTTATTACATTCGTAAATAAGA-TAATGTAGGATCTACTGCCAAATTATCTT---ATTAATCAA-CC-TGCAACAAGTCT-AATATCTCAGCACAAGAA-GCCTGTTCAAAG-TAATTATAAGGCCAA-GCTCATTATGC--A--CTCA----CTGACTATTTAATTA-GCAA-TTCATCTTTT-TTCC-----ACCAAATAATTAAGAAAAACAAAGTAACTGAATTAATTAAGAAACAAAGGAACTAGAGACGTGGTCTT-TGCTGCATGTCA-----CAAGGGCTGT-TT-ACTACATCCA-A-AATGTGTTTCTAACTA---TCAAGAG-TTTCCATG-GTAAGGGAAAATAACTTGTTAGAG-TCAGC-ATAACCAGTG-----GTACCAGGCCCACACTGTTGACTC----------------TT-G-TTCTCTT---CTTGTTTTGAGTTCAA-AATCAAT-GGGGGACCAGTTTAAAAGTCAGCC-TCAAAGT---TTTTTTT-------TTTTTTA--------------AAGAAATTTTCTTTACCCAATTCTATAATGTT-AGAG---------CAAGTATATGTGC-TTCATTTTTTTCAAACAAAAGTAACGAAATTCCTCAGAAACATTTTTTTAA-AAATACAA-G-C--AAAAGGGGGTAAATTATTTGCCAATTTTTCTGAAAAATCAGCCCTAAAAATGTT-TTTTTGCTACAATCTTACCAATATA-AAGTTTAAAAGAAAATCCGCCATTCATTCCGACACTTTTTTTTTTTTAAAGTGAAATGTATGTCTAGattg
gi|5 : GTTGCGATTTTGTTTTTACATTTTCACATTTGACGTTCAGTTCGATACGTGCATATCAATTTT-CACT-GATTTTT----GCC--AA-TA-GTGTTATT-A-ACATA-GACT--ATTCT-GGTTATATGGGCTGGGACCCGGA-GGGTAG--GCCTAGTTCA--AATGGACTAGCCGCTA-GGCCTCAGTTA-----CTGCCCTC---AGAAT-CGCAGAATAAAGTATGAAAT-GTCTAAAGTT-ATAAAGAATAT--------GTAA-------TACTCGTATTAATTATTGATTTATTTATTATCCTTGTTTCTTCCATACCAGTTTTCTTTCTC-TAAGATCC--CCAAATATAGCT---
gi|6 : tatttagcgagttggtttCCT-AAAATGTTCTTTTTGATACAATCTTT--ATCATCTAAGTTTAGAT-AAAATCC-CCATCCA-TCCGA-AC-TTTTTTTTAAAAAAATGAAGTGTATATCTAGTGCATTTAGAAATGTTTCCAGTGGGCTATT-TTCCTGTGGGGCCTATATTTTCAT
gi|7 : TCTTA--AACATCTAAGTTAAAAA-AAAATCC-CCTTACA-TTCGA-AC-TTTTATTTTAAAAAGTGAAGTGTATGTCTAGTACATTTAGAAATGTCTCATGTGAGCCATT-TTTCTGTGGGGCCTATATTTTCATgttttgctttatttgactggtgtttccatgacaacagctaagaatataatttttatatacaacttattttaatactaaataggcaaacatgaagaaaatattacttgtaggagaatatcaaacaacccatttccagcaatttttggtccctacagataatcag
gi|8 : CTA-G-CCTTAATTGATATGCTGCCCTC---TGAAT-CACAGAATAAATTCTGAAAT-GTCTCAAGTT-ATAAAGAACATTTCAAGAGGTGACTCAACATACTAGCAGTTATTATTGAAATATCTTTT---CTCATTACTTTAATTTCACTTTTCTATCTCGTATAATCT--CTAAATA--GCTTGCAAATGTAGATTTTAGAATAGTGTATTCATGATGT-----CATATTCATTCAGACGTCATTGAATTTCAAAGTT---A-ATCAATTATGA-CGGCATAGTTTCC-AACGA-----TCTGGTgttttgctttatttgactggtgtttccatgacaacagctaggaatataatttttatatacaacttattttaatgctaaataggcatacttgaagaaaatattacttgaaggataataccaaacatcccatttccagcaaattttggtcctaacagataatcagtgt
gi|9 : AAGTTTCAATATCAATTATGAACGTCATAG---CT-AAGAACTGCAACTGGTTTTG-TTTACTCCGCTCAT-TAGAATCATGTAGTTTTTT-----TTCACAT-----------ATACATTATTTAATTGAA-TGAAAAT-AT--TGTA--CAATTAAT-A--AGTGTAAGCCCTAATGCCTATGCAT---------AAG-ACAACAA-TT---ATA-TTGCTGGGCCCAAACTTG-C-CT
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|12 ): TGTATTTTCATGTTTTGCTTTATTTGATTGGTGTTTCCATGACAACAGCTATAGATACATATATGTAGGAATTTTTATATACAACTTATTTTAATACTAAATAGGCATACTTGAGAATTACTCGTAGGAGAATATCAAACATC
Unaligned ( gi|14 ): GGAGACTATATTTTCATTTGTGAGAATATGAAACATTCCATTTCCAGCAAATTTTGGTCCTTACAGATAATCAGTGT
Alignments
lowQualScore : 1 1 1 2222 11 1 1 222222 1 11 11111 3333333 1 11 1111 22222 1111 1111 22222222 3333333 11111 11 111 444444 1 333333 111 1 111 22222 1 1 1 66666666666666666666666 333333 11 11 11 222222 444444444 1 1 222 1 1 111 1 1 1 1 111 111 1 1 111 1 11 1 1 1 1 1 11 11 11 111 1 1 1 11 1 1 1 1 11 1 1 11111 2222 1 1 1 111 1 222222 111 1111 1 1 1 1 11 22222 11 1 1 1 1111 111 1 22222 1 11 22 11111 111111111 3333333333333333333 111 111 1 1 11 22222 1 1111 11 11 1 333 2 1 1 11 1
lowQualScore : 2 0 1 0 1 0 1111 33 0 0 1 555555 0 33 44444 7777777 0 0 33 55 9999 0 2 8 555 00000 7777 2222 4 888 6 7 77 99999999 2222222 3 2 6 1 44444 33 7 777 000000 2 1 1 444444 3 777 3 0 444 8 00000 3 0 0 0 3 88888888888888888888888 7 0 0 3 111111 33 33 2 33 888888 2 000000000 0 0 222 0 0 666 3 0 0 3 0 7 3 3 777 777 3 0 0 0 777 0 33 0 0 1 0 0 3 55 0 33 0 3 22 33 1 777 0 3 0 3 0 33 0 0 0 0 11 3 0 0 3 2 88888 1111 1 0 0 0 0 444 0 666666 6 333 8888 3 0 0 0 0 2 00 55555 33 0 0 0 4444 2 777 0 22222 0 55 3 11 44 55 00000 666666666 2222222222222222222 0 999 2 2 888 2 5 0 0 22 77777 0 33 0 0 0 1 2 999 00 2222 00 3 9 0 0 33 0 333 0 0 2 6 2 0 2 3 33 99 0 8 3 1 99 0 1 8 0 8 1 8 8 8 1 3 55 2 0 2
lowQualScore : . . . . . . .... .. . . . ...... . .. ..... ....... . . .. .. .... . . . ... ..... .... .... . ... . . .. ........ ....... . . . . ..... .. . ... ...... . . . ...... . ... . . ... . ..... . . . . . ....................... . . . . ...... .. .. . .. ...... . ......... . . ... . . ... . . . . . . . . ... ... . . . . ... . .. . . . . . . .. . .. . . .. .. . ... . . . . . .. . . . . .. . . . . . ..... .... . . . . . ... . ...... . ... .... . . . . . . .. ..... .. . . . .... . ... . ..... . .. . .. .. .. ..... ......... ................... . ... . . ... . . . . .. ..... . .. . . . . . ... .. .... .. . . . . .. . ... . . . . . . . . .. .. . . . . .. . . . . . . . . . . . .. . . .
lowQualScore : 0 8 0 0 0 0 2222 88 0 0 0 222222 0 88 00000 5555555 0 2 88 88 5555 2 5 0 444 00000 2222 0000 2 777 7 5 00 00000000 5555555 2 5 5 0 00000 88 0 555 777777 0 0 0 777777 2 555 2 0 000 0 00000 0 0 0 0 2 55555555555555555555555 0 8 8 2 888888 88 88 5 88 888888 5 000000000 0 0 000 0 0 222 2 0 0 3 0 0 2 2 555 555 2 8 0 0 555 0 88 0 0 0 0 0 2 55 0 22 2 2 55 88 2 555 0 2 0 2 0 88 0 0 0 0 00 2 0 0 2 5 55555 2222 0 0 0 0 2 555 0 000000 5 888 2222 2 0 0 0 0 5 88 00000 88 0 0 0 2222 5 555 0 22222 0 88 0 88 22 55 00000 000000000 0000000000000000000 1 111 8 8 222 5 0 0 0 55 88888 8 55 2 8 0 2 5 000 55 2222 22 2 2 8 2 88 0 555 0 0 5 5 5 0 5 5 88 22 2 0 2 0 22 8 4 0 8 0 0 0 0 0 4 2 22 5 0 5
consensus : GTTGCGATTTTGTTTTTGCATTTTCACATTTGACATTCAGTTCGGTACGTGNATATCAATTTT-CANC-GATTCTT----GCC--AA-TA-ATNTTATT-A-ACGTA-GACC--ACTCT-GG--ACATGGGC------CTGGA-AGGTAG--GCCTAGTTCA--AAGGAACTAGCCGCTAGG-CCTCAGTTA-----CTGCCCTCG---GAAT-CGCAGAATAAATTNTGAAAT-GTCTNAAGTTA-TAAAGAATAT--------GTAA-------TACTCGTATTAATTATTGATTTATCTATTGTCCTCGTTTCTTTCATTCCANTTTTCTTTCTC-TAAGATCC--CTAAATATAGCT---AAAT-----TTTCAAAATAGTGTATTCATGATGTCGTCACATNTNCATTCAAACGTCATTGAA----AAAGTT---ATATCAATTATGA-CGTCATAG---CT-AAAGA-----ACTGGTTTTG-TTTACTCCG-TCAT-TAGAATCATGTAGTCTTTTAGTGGTCCATATC-------CTCACACATTATTTAATTGAATTGAAAA--AT--TGTA--CA--TAATGA--AGTGTAAGCC------CCTATGCAT---------AAG-ACAAAAA-CTAC-ATA-TTG-TGGG--CAAACTTG-C-CTGA-AGTT-CAATATGTTGTG---GTCGGC---AAAGCTGTTT-ATATC-AA---GCTA-G--TT-ACATTTC-TTTNATAAC-TGCAAAAAGTCT-TAGCAAAAAACTTATT-CATT-GCAAATAAAAATAATGTAG-ATCTACTG--AAATTTTCTT---GTTA-TCAAACC-AGCAACAAGTCT-AAT--TTCAGC-CAA-AA-GCTTGT-CAATN-TCATGATAAGGC-AA-GCTCATTATGC--A--TTCA----CTGANT-TTTAATTT-ACAA-TTCAT--TTT-TTCN-----ACCAAG-AATTAAGAAA--CGAAGTA-CTGAATTAATTAAGAAACAAAGTA-CTAGAGA-GTG-TCTTCTGCTGCATNACA-----CAAG--TTGT-TT-CCTACA-CTA-A-AATGTGTTTCTAACTA---AAAAGAG-TTTC---A-GTAAGGGAAA-TAACTTGTTAGAGATCAGCCATAAAC--TG-----GTACC---------CTGTTGACT-----------------C-TCGCTTCTCTC---TTTGTGTGTAGC-CACCAATCAAC-GGGGTACCAGTTTAAAA-TCAGCC-TAAAAGTG-ATTTTTTT----GTATTTTCTATGGCCTCTTAT-AAAAGAAATATTCTTAAGCCCATTCTATAATTTTGAGAAATTGTAGGTCAAGTATATGTGCTTCATTTTTT-CAAACAAAAGTAAAGAAATTCCTCAGA--CA-TTTTTT--AAAATACAA-G-AGAAAAAGGGGGTAA-TTATTTGCCATTTTTACTGAAAAA-CAGCCCT-AAAATGTTCTTTTTGNTACAATCTTA--AACATCTAAGTTTAAAA-AAAATCC-CCATACA-TCCGA-AC-TTTTTTTTTAAAAAGTGAAGTGTATGTCTAGTGCATTTAGAAATGTCTCCGNTGGGCCATT-TTCCTGTGGGGCCTATATTTTCATT
Reference ( family-1091 ) : GTTGCGATTTTGTTTTTGCATTTTCACATTTGACATTCAGTTCGGTACGTGNATATCAATTTT-CANC-GATTCTT----GCC--AA-TA-ATNTTATT-A-ACGTA-GACC--ACTCT-GG--ACATGGGC------CTGGA-AGGTAG--GCCTAGTTCA--AAGGAACTAGCCGCTAGG-CCTCAGTTA-----CTGCCCTCG---GAAT-CGCAGAATAAATTNTGAAAT-GTCTNAAGTTA-TAAAGAATAT--------GTAA-------TACTCGTATTAATTATTGATTTATCTATTGTCCTCGTTTCTTTCATTCCANTTTTCTTTCTC-TAAGATCC--CTAAATATAGCT---AAAT-----TTTCAAAATAGTGTATTCATGATGTCGTCACATNTNCATTCAAACGTCATTGAA----AAAGTT---ATATCAATTATGA-CGTCATAG---CT-AAAGA-----ACTGGTTTTG-TTTACTCCG-TCAT-TAGAATCATGTAGTCTTTTAGTGGTCCATATC-------CTCACACATTATTTAATTGAATTGAAAA--AT--TGTA--CA--TAATGA--AGTGTAAGCC------CCTATGCAT---------AAG-ACAAAAA-CTAC-ATA-TTG-TGGG--CAAACTTG-C-CTGA-AGTT-CAATATGTTGTG---GTCGGC---AAAGCTGTTT-ATATC-AA---GCTA-G--TT-ACATTTC-TTTNATAAC-TGCAAAAAGTCT-TAGCAAAAAACTTATT-CATT-GCAAATAAAAATAATGTAG-ATCTACTG--AAATTTTCTT---GTTA-TCAAACC-AGCAACAAGTCT-AAT--TTCAGC-CAA-AA-GCTTGT-CAATN-TCATGATAAGGC-AA-GCTCATTATGC--A--TTCA----CTGANT-TTTAATTT-ACAA-TTCAT--TTT-TTCN-----ACCAAG-AATTAAGAAA--CGAAGTA-CTGAATTAATTAAGAAACAAAGTA-CTAGAGA-GTG-TCTTCTGCTGCATNACA-----CAAG--TTGT-TT-CCTACA-CTA-A-AATGTGTTTCTAACTA---AAAAGAG-TTTC---A-GTAAGGGAAA-TAACTTGTTAGAGATCAGCCATAAAC--TG-----GTACC---------CTGTTGACT-----------------C-TCGCTTCTCTC---TTTGTNTNTAGC-CACCAATCAAC-GGGGTACCAGTTTAAAA-TCAGCC-TAAAAGTG-ATTTTTTT----GTATTTTCTATGGCCTCTTAT-AAAAGAAATATTCTTAAGCCCATTCTATAATTTTGAGAAATTGTAGGTCAAGTATATGTGCTTCATTTTTT-CAAACAAAAGTAAAGAAATTCCTCAGA--CA-TTTTTT--AAAATACAA-G-AGAAAAAGGGGGTAA-TTATTTGCCATTTTTACTGAAAAA-CAGCCCT-AAAATGTTCTTTTTGNTACAATCTTA--AACATCTAAGTTTAAAA-AAAATCC-CCATACA-TCCGA-AC-TTTTTTTTTAAAAAGTGAAGTGTATGTCTAGTGCATTTAGAAATGTCTCCGNTGGGCCATT-TTCCTGTGGGGCCTATATTTTCATT
gi|1 : GTTGCGATTTTCTTTTT-CATTTTCACATTTAACATTCAGTTCGGTACGTGCATATCAATTGT-CAGT-GATTTTT----GCC--AA-TA-ACTTTACTGA-AC-TA-GACC--ACTCT-GA--ATATGGAC------TTGGA-AGGTAG--GCCTAGTTCA--AAAGAACTAGCCGCTAGG-CCTCAGTTA-----CTGCCCTCG---GAAT-GGCAGAATGAATTATAAAAT-GTCTTAAGTTG-TAAAGAATAT--------GTAA-------TACTCATATTAATTATTGATTTATCTATTGTCCTCGTTTCTTTCATTCTAATTTTCTTTCTC-GAAGATCC--CTGAATACAGCT---AAA------TTTCAAAATAGTGTATTCATGATGTCGTCACAAGTATACTCAAACGTCATTG------AAAGTC---ATATCAATTATGA-CGTCATAG---CT-AAAGA-----ACTGGTGTTG-TTTTCTCCA-TCAT-TAGAATCATGTAGTCTTTTAGTGGTCCATATC-------TTCACATACCATCTGATTGAATTGAAAT--ATAGTGTA--CA--TAATGA--AGTGTAAGCC------CCTATGCAT---------CAG-ACGAAAA-CTAC-ATA-TTG-TGGA--CAAACTTG-C-CTGA-AGTT-CAATATGTTGTG---GTTGGC---AAAGCTGCTT-ATATC-AA---GCTA-G--TT-ACATTTC-TTTGATAAC-TACAAAAAGTCT-GTGC-AAAAACGTATT-CATT-GCAAATAAAAATAATGCAG-ATCTACTG--ATATTTTCTT---GTTA-TCAAACC-AGCAACAAGTCC-AAT--TTCAGC-CAA-AA-GCTTGT-CAATT-TCATGATAAGGC-AA-GCTCATTATGCAAA--TTTA----CTGAAT-TTTAATCT-ACAA-TTAAT--TTTATTCA-----A-CATG-AATTAAGAAA--CAAAGTA-CTGAATCAATTAAGAAACAAAGTA-CTAGAGA-TTG-TCTTCTGCTGCATGACA-----CAAG--TTGTCTT-CCTACA-CTA-A-AATGTGTTTCTAACTT---AAAAGAG-TTTC---A-GTATGGGAAA-TAACTTGGTAGAGATCAGCC-CAAAC--TG-----GTACC---------CTGTTGACTCCTTTTTTCCCTTTTGAC-TCTTTTCTCTT---TTTGTTTTTAG--CACAAATCAAT-GGGGTGCCAGTTTAAAA-TCAGCC-TAAAAGTG-ATTTTTTT----GTATTGTCTATGGCTTCTTGT-AAAAGAAATATTCTTAAGCCCATTCTATATTTTTGAGAAATTGTAGATCAAGTATATGTGT----TTTTTT-CAAACAAAAGTAA-----------AGA--CA-TGTTTTA-AAAATACAATG-AGAGAAAGGAGGTAA-TTATTTGCCATTTTTATTGAAAA-------CT-AAAATTTTTTTTTTGTTACAATCTTA--AACATCTAAGTTAAAAA-AAAATCC-CTATACA-TCCCA-TC-TATTTTTTTAAAAAGTGAAATGTATATCTAGTGTATTTATAAATGTCTCCATTGGGCTATG-TTCCTGTGGAGACTATATTTTCATT
gi|10 : ACAGTGAGTTGGG---GTTTATCTCAATTTTTCAACTGACTCTTACATGCCCAAA-TAGATTTTATT-GCAC-TATGGCCTTACTTTTGG--ACATGGGA------CTGCA-AAGTGGTTGTCT--TTGACTAAGTAACTCGCCGCTAGGGCCTT--TTA-----TTGCTCTCGCAGGAA----CTGAA-AAATTTTTAAATAGTCTCA-GTTAATAAAGAATA
gi|11 : ATTGGACATTCAGTTTGGTGTCTGGATATCACATTC-CATC-TATCCTT----ATC--AATTA-ATGTTATT-T-ATGTA-GACC--GCTTT-TG--ACATTGA-------CTGGATATATAG--TTCCACTT------GGAA--AGCTGATAGG-CTTGATATA-----CAGCCCCCT---GAATCCCCAAAACAAATT-----AT-ATCC--AGTTT-TAAATAATAT--------
gi|13 : tTGTTTTTGCATTTTCATATTTAACATTCAGTTCGGTACGTGAATATCA
gi|15 : tatttagtatgttggttcattacttgaatgAAAC--TG-----GTATC---------CTGTTGGCT-----------------C-TCGCTTCTCTCAAGTTTGCGTGTAG--CACCAATCAATGGGGGTACCAG
gi|16 : AC--TG-----GTACC---------CTGTTGACT-------------------TCGCATCTCTTATGTTTGTGTGTAGC-CACCGATCAGC-GGGGTACCAGT
gi|17 : AAC--TG-----GTACC---------CTGTTGACT-------------------TCACATCTCTTATGTTTCTGTGTAGC-CACCAATCAGT-GGGGTACCA
gi|18 : t---TTTGTGTGTAGC--ACCAATCAAC-GAGGTACC
gi|19 : ctcaagAAC--TG-----ATATC---------CTGTTGGCT-----------------C-TCGCTTGTCTC---T
gi|2 : GAACACAATCCAAAAT-GTCTAAAGTTG-TAAAGAATAT--------GTAA-------CAATCGTATTAATC--T-ATTTATTTATTGTCCTCGTTTCTTTCCTTCCATTTTTCTTTCTC-T----TTCTACTAAATGTATTT---AAAT-----TTTCAAAATAGTGTATTCATGATGTTGTCACATTTCCATTCTAACGTCATTGAA----A--GTT---ATATCAATTATGA-CGTCATAG---CT-CAAGA-----ACTGGTTTTG-TTTAATCCG-TCAT-TAGAATCATGTAGTCTTTTAGTGATCCATATCCTCTTATCTCACACATTATTTAATTGAATTGAAAAACAT--TGTA--CA--TAATGA--AGTGTAAGCC------CCTATCCAT---------AAG-ACAAAAA-CTA--ATA-TTT-TAGG---AAACGTG-C-CTTA-AGTT-AACCA---TATG---GTCGGC---AAAAC-------TATC-AA---ACTA-G--CT-AGATTTC-TTTGACAAA-TACAAAAAGTCT-TAATAAAAAA---ATT-CATT-GGAAATGAAAATACTGTAG-ATCTACTG--AAGTTCTCTT---GTTA-TAAAACG-ATCAGCAAGTCTAAAT--TTCAGT-CAA-AA-GCTTGT-CAATA-GCAAGATAAGGC-AA-GTTCATTATGC--ATTTTCA----CTGAAT-CTAAATTT-ACAA-TTCAT--CTT-TTTA-----ATCAAG-AATTAAGAAA--TGAAGTA-CTAAATTAATTAAAAAACAAAGTA-CTACATA-GTG-TCTCCTGCTACAGTACATGTCTCAAT--TTGT-TTACCTACA-CT--A-AATTTGTTTCTAACTA---AAACGAG-TTAC---A-GTAAGGAAAA-TAAGTTGTTAGATATCAACC-TAAAC--TG-----GTACT---------ATGTTGAAT-----------------C-TTGCGTCTTTT---TTT-----TAG--CACCAACCAAC-TGGGTAACAGTTTAAAA-TCAGCCTTAAAAGTGAAATTTTCT----ATATTTTTGATAGCCTCTTATGAAAAAAGGTATTCCTACGCACATTCTATAATTTTGAGATACTGTAAGTCAAACATATGTGCATC-TTTTTT-TAAAT-AAAGTAAAGGAATTCCTCAGA--CA-TTATTC---AAATACAAGG-AGAAAAAAAAG-------------------------AAAC-CAGCCCT-AAAATGTTCTTTTTGTAACAATATTA--Aagt
gi|20 : cattAC--TG-----GTATC---------CTGTTGGCT-----------------C-TCGCTTCTCTC---
gi|21 : AC--TG-----GTACC---------CTGTTGA-------------------C-TCGCTTCTCTC---gagt
gi|3 : TAG---CTGAAAGA-----ACTG---TTGCTTTACTCAG-TCATGTAGAATCATGTAG-CTTTT------------------------CACAT------ATTGAATTGAAAA---T--TGTAATTA--TAATGACTGGTGTAAGCC------A--ATGCACCTTTCACTCAAGCACAAAAAACTACTATAATTG-TAAG--CAA--TTGACACTGACAGTTTCAA-ATGTTA-----GTCGGTGCAAAAGCTGTTT-ATATC-AATTAGCTACGACTT-ACATTTCGTTTCATAAC-TGCAAAAAGTCTATAGCAAAAAACTTATT-CAT--GCAAATAAAAATAATGTA--ATCTACTG--AAATTTTCTTAAAGGTA-TCAAACCGAGCAACA-GTCT-AAT--TTCAGC-CAA-AAAGCTTGT-CAATCATCATGA--AGGC-AAAGCTC--CAT----A--TTCAAATTCTGACT-TTTTATTTTACAACTTTAT--GTC-TTCCTGTTCACCA-G-AATAATGAAA--C-AAG-A-CTGAATTGAATAAGAAACAAAGTA-CTAGAGA-GTG-CTTTCTCGAGCATT-CA-----AAAG--TTGT-TT-CCTACA-CTATACAAGGT-TTTCTAACTATTAAAAAGAGGTTTC---ACGTAAGGGAAA-TG-------------CAGCAATAAAC--TGTACATGTACC---------CTGTGGACT-----------------CCTCGTCTCTTTC---TTTGTTTTTAGC--ACAAATCAAT-GGG-TACCAGTTTAAAA-TCAGCC-TAAAAATG-ATTTTTTTTTTGGTATTCTCTATGGCCTCTTAT-AAAAGAAATATGCTTGAGCCCATTCTATAATTTTGAGAAGTTGTAGGTCAAGTATATGTGCTTCATTTTTT-AAAACAAAAGTAAAGAAATTCTTCAGA--CATTTTTTT--TAAATACAA-GCAGAAAAA-GGGGTAA-TTATTTGACATTTTTACTGAAAAA-CAACCCT-ACAATGTGCTTTTTGATACAATCTTA--AACATGTAAGTTTAAAA-AAAA----ACATACA-TCCGA-AC-TTTTTTTCTTAAAAGTGAAGTGTATGTCTAGTGCATCTAGAAA--TTTCCGTTGG--CATTGTCCCTGT-GGGCCTATGTTTTCATaagt
gi|4 : TT-CAATATGTTGTGTCCATCGGC---AAAGCTGTTTTATATCTAA---GCTA-G--TTTACATTTC-TTTCATAACCTGCAAAAAGTCT-TAGCAAAAAACTTATTACATTCGTAAATAAGA-TAATGTAGGATCTACTGCCAAATTATCTT---ATTAATCAA-CC-TGCAACAAGTCT-AATATCTCAGCACAAGAA-GCCTGTTCAAAG-TAATTATAAGGCCAA-GCTCATTATGC--A--CTCA----CTGACTATTTAATTA-GCAA-TTCATCTTTT-TTCC-----ACCAAATAATTAAGAAAAACAAAGTAACTGAATTAATTAAGAAACAAAGGAACTAGAGACGTGGTCTT-TGCTGCATGTCA-----CAAGGGCTGT-TT-ACTACATCCA-A-AATGTGTTTCTAACTA---TCAAGAG-TTTCCATG-GTAAGGGAAAATAACTTGTTAGAG-TCAGC-ATAACCAGTG-----GTACCAGGCCCACACTGTTGACT-----------------C-TTG-TTCTCTT---CTTGTTTTGAGTTCAA-AATCAAT-GGGGGACCAGTTTAAAAGTCAGCC-TCAAAGT---TTTTTTT-------TTTTTTA--------------AAGAAATTTTCTTTACCCAATTCTATAATGTT-AGAG---------CAAGTATATGTGCTTCATTTTTTTCAAACAAAAGTAACGAAATTCCTCAGAAACA-TTTTTTTAAAAATACAA-G-C--AAAAGGGGGTAAATTATTTGCCAATTTTTCTGAAAAATCAGCCCTAAAAATGTT-TTTTTGCTACAATCTTACCAATATA-AAGTTTAAAAGAAAATCCGCCATTCATTCCGACACTTTTTTTTTTTTAAAGTGAAATGTATGTCTAGattg
gi|5 : GTTGCGATTTTGTTTTTACATTTTCACATTTGACGTTCAGTTCGATACGTGCATATCAATTTT-CACT-GATTTTT----GCC--AA-TA-GTGTTATT-A-ACATA-GACT--ATTCT-GGTTATATGGGCTGGGACCCGGA-GGGTAG--GCCTAGTTCA--AATGGACTAGCCGCTAGG-CCTCAGTTA-----CTGCCCTCA---GAAT-CGCAGAATAAAGTATGAAAT-GTCTAAAGTTA-TAAAGAATAT--------GTAA-------TACTCGTATTAATTATTGATTTATTTATTATCCTTGTTTCTTCCATACCAGTTTTCTTTCTC-TAAGATCC--CCAAATATAGCT---
gi|6 : tatttagcgagttggtttCCT-AAAATGTTCTTTTTGATACAATCTTT--ATCATCTAAGTTTAGAT-AAAATCC-CCATCCA-TCCGA-AC-TTTTTTTTAAAAAAATGAAGTGTATATCTAGTGCATTTAGAAATGTTTCCAGTGGGCTATT-TTCCTGTGGGGCCTATATTTTCAT
gi|7 : TCTTA--AACATCTAAGTTAAAAA-AAAATCC-CCTTACA-TTCGA-AC-TTTTATTTTAAAAAGTGAAGTGTATGTCTAGTACATTTAGAAATGTCTCATGTGAGCCATT-TTTCTGTGGGGCCTATATTTTCATgttttgctttatttgactggtgtttccatgacaacagctaagaatataatttttatatacaacttattttaatactaaataggcaaacatgaagaaaatattacttgtaggagaatatcaaacaacccatttccagcaatttttggtccctacagataatcag
gi|8 : CTAG--CCTTAATTGATATGCTGCCCTCT---GAAT-CACAGAATAAATTCTGAAAT-GTCTCAAGTTA-TAAAGAACATTTCAAGAGGTGACTCAACATACTAGCAGTTATTATTGAAATATCTTTT---CTCATTACTTTAATTTCACTTTTCTATCTCGTATAATCT--CTAAATA--GCTTGCAAATGTAGATTTTAGAATAGTGTATTCATGATGT-----CATATTCATTCAGACGTCATTGAATTTCAAAGTT---A-ATCAATTATGA-CGGCATAGTTTCC-AACGA-----TCTGGTgttttgctttatttgactggtgtttccatgacaacagctaggaatataatttttatatacaacttattttaatgctaaataggcatacttgaagaaaatattacttgaaggataataccaaacatcccatttccagcaaattttggtcctaacagataatcagtgt
gi|9 : AAGTTTCAATATCAATTATGAACGTCATAG---CT-AAGAACTGCAACTGGTTTTG-TTTACTCCGCTCAT-TAGAATCATGTAGTTTTTT-----TTCACAT-----------ATACATTATTTAATTGAA-TGAAAAT-AT--TGTA--CAATTAAT-A--AGTGTAAGCCCTAATGCCTATGCAT---------AAG-ACAACAA-TT---ATA-TTGCTGGGCCCAAACTTG-C-CT
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|12 ): TGTATTTTCATGTTTTGCTTTATTTGATTGGTGTTTCCATGACAACAGCTATAGATACATATATGTAGGAATTTTTATATACAACTTATTTTAATACTAAATAGGCATACTTGAGAATTACTCGTAGGAGAATATCAAACATC
Unaligned ( gi|14 ): GGAGACTATATTTTCATTTGTGAGAATATGAAACATTCCATTTCCAGCAAATTTTGGTCCTTACAGATAATCAGTGT
Alignments
lowQualScore : 1 1 1 2222 11 1 1 222222 1 11 11111 3333333 1 11 1111 22222 1111 1111 22222222 3333333 11111 11 111 444444 1 333333 111 1 111 22222 1 1 1 66666666666666666666666 333333 11 11 11 222222 444444444 1 1 222 1 1 111 1 1 1 1 111 111 1 1 111 1 11 1 1 1 1 1 11 11 11 111 1 1 1 11 1 1 1 1 11 1 1 11111 2222 1 1 1 111 1 222222 111 1111 1 1 1 1 11 22222 11 1 1 1 1111 111 1 22222 1 11 22 11111 111111111 3333333333333333333 111 111 1 1 11 22222 1 1111 11 11 1 333 2 1 1 11 1
lowQualScore : 2 0 1 0 1 0 1111 33 0 0 1 555555 0 33 44444 7777777 0 0 33 55 9999 0 2 8 555 00000 7777 2222 4 888 6 7 77 99999999 2222222 3 2 6 1 44444 33 7 777 000000 2 1 1 444444 3 777 3 0 444 8 00000 3 0 0 0 3 88888888888888888888888 7 0 0 3 111111 33 33 2 33 888888 2 000000000 0 0 222 0 0 666 3 0 0 3 0 7 3 3 777 777 3 0 0 0 777 0 33 0 0 1 0 0 3 55 0 33 0 3 22 33 1 777 0 3 0 3 0 33 0 0 0 0 11 3 0 0 3 2 88888 1111 1 0 0 0 0 444 0 666666 6 333 8888 3 0 0 0 0 2 00 55555 33 0 0 0 4444 2 777 0 22222 0 55 3 11 44 55 00000 666666666 2222222222222222222 0 999 2 2 888 2 5 0 0 22 77777 0 33 0 0 0 1 2 999 00 2222 00 3 9 0 0 33 0 333 0 0 2 6 2 0 2 3 33 99 0 8 3 1 99 0 1 8 0 8 1 8 8 8 1 3 55 2 0 2
lowQualScore : . . . . . . .... .. . . . ...... . .. ..... ....... . . .. .. .... . . . ... ..... .... .... . ... . . .. ........ ....... . . . . ..... .. . ... ...... . . . ...... . ... . . ... . ..... . . . . . ....................... . . . . ...... .. .. . .. ...... . ......... . . ... . . ... . . . . . . . . ... ... . . . . ... . .. . . . . . . .. . .. . . .. .. . ... . . . . . .. . . . . .. . . . . . ..... .... . . . . . ... . ...... . ... .... . . . . . . .. ..... .. . . . .... . ... . ..... . .. . .. .. .. ..... ......... ................... . ... . . ... . . . . .. ..... . .. . . . . . ... .. .... .. . . . . .. . ... . . . . . . . . .. .. . . . . .. . . . . . . . . . . . .. . . .
lowQualScore : 0 8 0 0 0 0 2222 88 0 0 0 222222 0 88 00000 5555555 0 2 88 88 5555 2 5 0 444 00000 2222 0000 2 777 7 5 00 00000000 5555555 2 5 5 0 00000 88 0 555 777777 0 0 0 777777 2 555 2 0 000 0 00000 0 0 0 0 2 55555555555555555555555 0 8 8 2 888888 88 88 5 88 888888 5 000000000 0 0 000 0 0 222 2 0 0 3 0 0 2 2 555 555 2 8 0 0 555 0 88 0 0 0 0 0 2 55 0 22 2 2 55 88 2 555 0 2 0 2 0 88 0 0 0 0 00 2 0 0 2 5 55555 2222 0 0 0 0 2 555 0 000000 5 888 2222 2 0 0 0 0 5 88 00000 88 0 0 0 2222 5 555 0 22222 0 88 0 88 22 55 00000 000000000 0000000000000000000 1 111 5 5 222 5 0 0 0 55 88888 8 55 2 8 0 2 5 000 55 2222 22 2 2 8 2 88 0 555 0 0 5 5 5 0 5 5 88 22 2 0 2 0 22 8 4 0 8 0 0 0 0 0 4 2 22 5 0 5
consensus : GTTGCGATTTTGTTTTTGCATTTTCACATTTGACATTCAGTTCGGTACGTGNATATCAATTTT-CANC-GATTCTT----GCC--AA-TA-ATNTTATT-A-ACGTA-GACC--ACTCT-GG--ACATGGGC------CTGGA-AGGTAG--GCCTAGTTCA--AAGGAACTAGCCGCTAGG-CCTCAGTTA-----CTGCCCTCG---GAAT-CGCAGAATAAATTNTGAAAT-GTCTNAAGTTA-TAAAGAATAT--------GTAA-------TACTCGTATTAATTATTGATTTATCTATTGTCCTCGTTTCTTTCATTCCANTTTTCTTTCTC-TAAGATCC--CTAAATATAGCT---AAAT-----TTTCAAAATAGTGTATTCATGATGTCGTCACATNTNCATTCAAACGTCATTGAA----AAAGTT---ATATCAATTATGA-CGTCATAG---CT-AAAGA-----ACTGGTTTTG-TTTACTCCG-TCAT-TAGAATCATGTAGTCTTTTAGTGGTCCATATC-------CTCACACATTATTTAATTGAATTGAAAA--AT--TGTA--CA--TAATGA--AGTGTAAGCC------CCTATGCAT---------AAG-ACAAAAA-CTAC-ATA-TTG-TGGG--CAAACTTG-C-CTGA-AGTT-CAATATGTTGTG---GTCGGC---AAAGCTGTTT-ATATC-AA---GCTA-G--TT-ACATTTC-TTTNATAAC-TGCAAAAAGTCT-TAGCAAAAAACTTATT-CATT-GCAAATAAAAATAATGTAG-ATCTACTG--AAATTTTCTT---GTTA-TCAAACC-AGCAACAAGTCT-AAT--TTCAGC-CAA-AA-GCTTGT-CAATN-TCATGATAAGGC-AA-GCTCATTATGC--A--TTCA----CTGANT-TTTAATTT-ACAA-TTCAT--TTT-TTCN-----ACCAAG-AATTAAGAAA--CGAAGTA-CTGAATTAATTAAGAAACAAAGTA-CTAGAGA-GTG-TCTTCTGCTGCATNACA-----CAAG--TTGT-TT-CCTACA-CTA-A-AATGTGTTTCTAACTA---AAAAGAG-TTTC---A-GTAAGGGAAA-TAACTTGTTAGAGATCAGCCATAAAC--TG-----GTACC---------CTGTTGACT-----------------C-TCGCTTCTCTC---TTTGTGTGTAGC-CACCAATCAAC-GGGGTACCAGTTTAAAA-TCAGCC-TAAAAGTG-ATTTTTTT----GTATTTTCTATGGCCTCTTAT-AAAAGAAATATTCTTAAGCCCATTCTATAATTTTGAGAAATTGTAGGTCAAGTATATGTGCTTCATTTTTT-CAAACAAAAGTAAAGAAATTCCTCAGA--CA-TTTTTT--AAAATACAA-G-AGAAAAAGGGGGTAA-TTATTTGCCATTTTTACTGAAAAA-CAGCCCT-AAAATGTTCTTTTTGNTACAATCTTA--AACATCTAAGTTTAAAA-AAAATCC-CCATACA-TCCGA-AC-TTTTTTTTTAAAAAGTGAAGTGTATGTCTAGTGCATTTAGAAATGTCTCCGNTGGGCCATT-TTCCTGTGGGGCCTATATTTTCATT
Reference ( family-1091 ) : GTTGCGATTTTGTTTTTGCATTTTCACATTTGACATTCAGTTCGGTACGTGNATATCAATTTT-CANC-GATTCTT----GCC--AA-TA-ATNTTATT-A-ACGTA-GACC--ACTCT-GG--ACATGGGC------CTGGA-AGGTAG--GCCTAGTTCA--AAGGAACTAGCCGCTAGG-CCTCAGTTA-----CTGCCCTCG---GAAT-CGCAGAATAAATTNTGAAAT-GTCTNAAGTTA-TAAAGAATAT--------GTAA-------TACTCGTATTAATTATTGATTTATCTATTGTCCTCGTTTCTTTCATTCCANTTTTCTTTCTC-TAAGATCC--CTAAATATAGCT---AAAT-----TTTCAAAATAGTGTATTCATGATGTCGTCACATNTNCATTCAAACGTCATTGAA----AAAGTT---ATATCAATTATGA-CGTCATAG---CT-AAAGA-----ACTGGTTTTG-TTTACTCCG-TCAT-TAGAATCATGTAGTCTTTTAGTGGTCCATATC-------CTCACACATTATTTAATTGAATTGAAAA--AT--TGTA--CA--TAATGA--AGTGTAAGCC------CCTATGCAT---------AAG-ACAAAAA-CTAC-ATA-TTG-TGGG--CAAACTTG-C-CTGA-AGTT-CAATATGTTGTG---GTCGGC---AAAGCTGTTT-ATATC-AA---GCTA-G--TT-ACATTTC-TTTNATAAC-TGCAAAAAGTCT-TAGCAAAAAACTTATT-CATT-GCAAATAAAAATAATGTAG-ATCTACTG--AAATTTTCTT---GTTA-TCAAACC-AGCAACAAGTCT-AAT--TTCAGC-CAA-AA-GCTTGT-CAATN-TCATGATAAGGC-AA-GCTCATTATGC--A--TTCA----CTGANT-TTTAATTT-ACAA-TTCAT--TTT-TTCN-----ACCAAG-AATTAAGAAA--CGAAGTA-CTGAATTAATTAAGAAACAAAGTA-CTAGAGA-GTG-TCTTCTGCTGCATNACA-----CAAG--TTGT-TT-CCTACA-CTA-A-AATGTGTTTCTAACTA---AAAAGAG-TTTC---A-GTAAGGGAAA-TAACTTGTTAGAGATCAGCCATAAAC--TG-----GTACC---------CTGTTGACT-----------------C-TCGCTTCTCTC---TTTGTGTGTAGC-CACCAATCAAC-GGGGTACCAGTTTAAAA-TCAGCC-TAAAAGTG-ATTTTTTT----GTATTTTCTATGGCCTCTTAT-AAAAGAAATATTCTTAAGCCCATTCTATAATTTTGAGAAATTGTAGGTCAAGTATATGTGCTTCATTTTTT-CAAACAAAAGTAAAGAAATTCCTCAGA--CA-TTTTTT--AAAATACAA-G-AGAAAAAGGGGGTAA-TTATTTGCCATTTTTACTGAAAAA-CAGCCCT-AAAATGTTCTTTTTGNTACAATCTTA--AACATCTAAGTTTAAAA-AAAATCC-CCATACA-TCCGA-AC-TTTTTTTTTAAAAAGTGAAGTGTATGTCTAGTGCATTTAGAAATGTCTCCGNTGGGCCATT-TTCCTGTGGGGCCTATATTTTCATT
gi|1 : GTTGCGATTTTCTTTTT-CATTTTCACATTTAACATTCAGTTCGGTACGTGCATATCAATTGT-CAGT-GATTTTT----GCC--AA-TA-ACTTTACTGA-AC-TA-GACC--ACTCT-GA--ATATGGAC------TTGGA-AGGTAG--GCCTAGTTCA--AAAGAACTAGCCGCTAGG-CCTCAGTTA-----CTGCCCTCG---GAAT-GGCAGAATGAATTATAAAAT-GTCTTAAGTTG-TAAAGAATAT--------GTAA-------TACTCATATTAATTATTGATTTATCTATTGTCCTCGTTTCTTTCATTCTAATTTTCTTTCTC-GAAGATCC--CTGAATACAGCT---AAA------TTTCAAAATAGTGTATTCATGATGTCGTCACAAGTATACTCAAACGTCATTG------AAAGTC---ATATCAATTATGA-CGTCATAG---CT-AAAGA-----ACTGGTGTTG-TTTTCTCCA-TCAT-TAGAATCATGTAGTCTTTTAGTGGTCCATATC-------TTCACATACCATCTGATTGAATTGAAAT--ATAGTGTA--CA--TAATGA--AGTGTAAGCC------CCTATGCAT---------CAG-ACGAAAA-CTAC-ATA-TTG-TGGA--CAAACTTG-C-CTGA-AGTT-CAATATGTTGTG---GTTGGC---AAAGCTGCTT-ATATC-AA---GCTA-G--TT-ACATTTC-TTTGATAAC-TACAAAAAGTCT-GTGC-AAAAACGTATT-CATT-GCAAATAAAAATAATGCAG-ATCTACTG--ATATTTTCTT---GTTA-TCAAACC-AGCAACAAGTCC-AAT--TTCAGC-CAA-AA-GCTTGT-CAATT-TCATGATAAGGC-AA-GCTCATTATGCAAA--TTTA----CTGAAT-TTTAATCT-ACAA-TTAAT--TTTATTCA-----A-CATG-AATTAAGAAA--CAAAGTA-CTGAATCAATTAAGAAACAAAGTA-CTAGAGA-TTG-TCTTCTGCTGCATGACA-----CAAG--TTGTCTT-CCTACA-CTA-A-AATGTGTTTCTAACTT---AAAAGAG-TTTC---A-GTATGGGAAA-TAACTTGGTAGAGATCAGCC-CAAAC--TG-----GTACC---------CTGTTGACTCCTTTTTTCCCTTTTGAC-TCTTTTCTCTT---TTTGTTTTTAG--CACAAATCAAT-GGGGTGCCAGTTTAAAA-TCAGCC-TAAAAGTG-ATTTTTTT----GTATTGTCTATGGCTTCTTGT-AAAAGAAATATTCTTAAGCCCATTCTATATTTTTGAGAAATTGTAGATCAAGTATATGTGT----TTTTTT-CAAACAAAAGTAA-----------AGA--CA-TGTTTTA-AAAATACAATG-AGAGAAAGGAGGTAA-TTATTTGCCATTTTTATTGAAAA-------CT-AAAATTTTTTTTTTGTTACAATCTTA--AACATCTAAGTTAAAAA-AAAATCC-CTATACA-TCCCA-TC-TATTTTTTTAAAAAGTGAAATGTATATCTAGTGTATTTATAAATGTCTCCATTGGGCTATG-TTCCTGTGGAGACTATATTTTCATT
gi|10 : ACAGTGAGTTGGG---GTTTATCTCAATTTTTCAACTGACTCTTACATGCCCAAA-TAGATTTTATT-GCAC-TATGGCCTTACTTTTGG--ACATGGGA------CTGCA-AAGTGGTTGTCT--TTGACTAAGTAACTCGCCGCTAGGGCCTT--TTA-----TTGCTCTCGCAGGAA----CTGAA-AAATTTTTAAATAGTCTCA-GTTAATAAAGAATA
gi|11 : ATTGGACATTCAGTTTGGTGTCTGGATATCACATTC-CATC-TATCCTT----ATC--AATTA-ATGTTATT-T-ATGTA-GACC--GCTTT-TG--ACATTGA-------CTGGATATATAG--TTCCACTT------GGAA--AGCTGATAGG-CTTGATATA-----CAGCCCCCT---GAATCCCCAAAACAAATT-----AT-ATCC--AGTTT-TAAATAATAT--------
gi|13 : tTGTTTTTGCATTTTCATATTTAACATTCAGTTCGGTACGTGAATATCA
gi|15 : tatttagtatgttggttcattacttgaatgAAAC--TG-----GTATC---------CTGTTGGCT-----------------C-TCGCTTCTCTCAAGTTTGCGTGTAG--CACCAATCAATGGGGGTACCAG
gi|16 : AC--TG-----GTACC---------CTGTTGACT-------------------TCGCATCTCTTATGTTTGTGTGTAGC-CACCGATCAGC-GGGGTACCAGT
gi|17 : AAC--TG-----GTACC---------CTGTTGACT-------------------TCACATCTCTTATGTTTCTGTGTAGC-CACCAATCAGT-GGGGTACCA
gi|18 : t---TTTGTGTGTAGC--ACCAATCAAC-GAGGTACC
gi|19 : ctcaagAAC--TG-----ATATC---------CTGTTGGCT-----------------C-TCGCTTGTCTC---T
gi|2 : GAACACAATCCAAAAT-GTCTAAAGTTG-TAAAGAATAT--------GTAA-------CAATCGTATTAATC--T-ATTTATTTATTGTCCTCGTTTCTTTCCTTCCATTTTTCTTTCTC-T----TTCTACTAAATGTATTT---AAAT-----TTTCAAAATAGTGTATTCATGATGTTGTCACATTTCCATTCTAACGTCATTGAA----A--GTT---ATATCAATTATGA-CGTCATAG---CT-CAAGA-----ACTGGTTTTG-TTTAATCCG-TCAT-TAGAATCATGTAGTCTTTTAGTGATCCATATCCTCTTATCTCACACATTATTTAATTGAATTGAAAAACAT--TGTA--CA--TAATGA--AGTGTAAGCC------CCTATCCAT---------AAG-ACAAAAA-CTA--ATA-TTT-TAGG---AAACGTG-C-CTTA-AGTT-AACCA---TATG---GTCGGC---AAAAC-------TATC-AA---ACTA-G--CT-AGATTTC-TTTGACAAA-TACAAAAAGTCT-TAATAAAAAA---ATT-CATT-GGAAATGAAAATACTGTAG-ATCTACTG--AAGTTCTCTT---GTTA-TAAAACG-ATCAGCAAGTCTAAAT--TTCAGT-CAA-AA-GCTTGT-CAATA-GCAAGATAAGGC-AA-GTTCATTATGC--ATTTTCA----CTGAAT-CTAAATTT-ACAA-TTCAT--CTT-TTTA-----ATCAAG-AATTAAGAAA--TGAAGTA-CTAAATTAATTAAAAAACAAAGTA-CTACATA-GTG-TCTCCTGCTACAGTACATGTCTCAAT--TTGT-TTACCTACA-CT--A-AATTTGTTTCTAACTA---AAACGAG-TTAC---A-GTAAGGAAAA-TAAGTTGTTAGATATCAACC-TAAAC--TG-----GTACT---------ATGTTGAAT-----------------C-TTGCGTCTTTT---TTT-----TAG--CACCAACCAAC-TGGGTAACAGTTTAAAA-TCAGCCTTAAAAGTGAAATTTTCT----ATATTTTTGATAGCCTCTTATGAAAAAAGGTATTCCTACGCACATTCTATAATTTTGAGATACTGTAAGTCAAACATATGTGCATC-TTTTTT-TAAAT-AAAGTAAAGGAATTCCTCAGA--CA-TTATTC---AAATACAAGG-AGAAAAAAAAG-------------------------AAAC-CAGCCCT-AAAATGTTCTTTTTGTAACAATATTA--Aagt
gi|20 : cattAC--TG-----GTATC---------CTGTTGGCT-----------------C-TCGCTTCTCTC---
gi|21 : AC--TG-----GTACC---------CTGTTGA-------------------C-TCGCTTCTCTC---gagt
gi|3 : TAG---CTGAAAGA-----ACTG---TTGCTTTACTCAG-TCATGTAGAATCATGTAG-CTTTT------------------------CACAT------ATTGAATTGAAAA---T--TGTAATTA--TAATGACTGGTGTAAGCC------A--ATGCACCTTTCACTCAAGCACAAAAAACTACTATAATTG-TAAG--CAA--TTGACACTGACAGTTTCAA-ATGTTA-----GTCGGTGCAAAAGCTGTTT-ATATC-AATTAGCTACGACTT-ACATTTCGTTTCATAAC-TGCAAAAAGTCTATAGCAAAAAACTTATT-CAT--GCAAATAAAAATAATGTA--ATCTACTG--AAATTTTCTTAAAGGTA-TCAAACCGAGCAACA-GTCT-AAT--TTCAGC-CAA-AAAGCTTGT-CAATCATCATGA--AGGC-AAAGCTC--CAT----A--TTCAAATTCTGACT-TTTTATTTTACAACTTTAT--GTC-TTCCTGTTCACCA-G-AATAATGAAA--C-AAG-A-CTGAATTGAATAAGAAACAAAGTA-CTAGAGA-GTG-CTTTCTCGAGCATT-CA-----AAAG--TTGT-TT-CCTACA-CTATACAAGGT-TTTCTAACTATTAAAAAGAGGTTTC---ACGTAAGGGAAA-TG-------------CAGCAATAAAC--TGTACATGTACC---------CTGTGGACT-----------------CCTCGTCTCTTTC---TTTGTTTTTAGC--ACAAATCAAT-GGG-TACCAGTTTAAAA-TCAGCC-TAAAAATG-ATTTTTTTTTTGGTATTCTCTATGGCCTCTTAT-AAAAGAAATATGCTTGAGCCCATTCTATAATTTTGAGAAGTTGTAGGTCAAGTATATGTGCTTCATTTTTT-AAAACAAAAGTAAAGAAATTCTTCAGA--CATTTTTTT--TAAATACAA-GCAGAAAAA-GGGGTAA-TTATTTGACATTTTTACTGAAAAA-CAACCCT-ACAATGTGCTTTTTGATACAATCTTA--AACATGTAAGTTTAAAA-AAAA----ACATACA-TCCGA-AC-TTTTTTTCTTAAAAGTGAAGTGTATGTCTAGTGCATCTAGAAA--TTTCCGTTGG--CATTGTCCCTGT-GGGCCTATGTTTTCATaagt
gi|4 : TT-CAATATGTTGTGTCCATCGGC---AAAGCTGTTTTATATCTAA---GCTA-G--TTTACATTTC-TTTCATAACCTGCAAAAAGTCT-TAGCAAAAAACTTATTACATTCGTAAATAAGA-TAATGTAGGATCTACTGCCAAATTATCTT---ATTAATCAA-CC-TGCAACAAGTCT-AATATCTCAGCACAAGAA-GCCTGTTCAAAG-TAATTATAAGGCCAA-GCTCATTATGC--A--CTCA----CTGACTATTTAATTA-GCAA-TTCATCTTTT-TTCC-----ACCAAATAATTAAGAAAAACAAAGTAACTGAATTAATTAAGAAACAAAGGAACTAGAGACGTGGTCTT-TGCTGCATGTCA-----CAAGGGCTGT-TT-ACTACATCCA-A-AATGTGTTTCTAACTA---TCAAGAG-TTTCCATG-GTAAGGGAAAATAACTTGTTAGAG-TCAGC-ATAACCAGTG-----GTACCAGGCCCACACTGTTGACT-----------------C-TTG-TTCTCTT---CTTGTTTTGAGTTCAA-AATCAAT-GGGGGACCAGTTTAAAAGTCAGCC-TCAAAGT---TTTTTTT-------TTTTTTA--------------AAGAAATTTTCTTTACCCAATTCTATAATGTT-AGAG---------CAAGTATATGTGCTTCATTTTTTTCAAACAAAAGTAACGAAATTCCTCAGAAACA-TTTTTTTAAAAATACAA-G-C--AAAAGGGGGTAAATTATTTGCCAATTTTTCTGAAAAATCAGCCCTAAAAATGTT-TTTTTGCTACAATCTTACCAATATA-AAGTTTAAAAGAAAATCCGCCATTCATTCCGACACTTTTTTTTTTTTAAAGTGAAATGTATGTCTAGattg
gi|5 : GTTGCGATTTTGTTTTTACATTTTCACATTTGACGTTCAGTTCGATACGTGCATATCAATTTT-CACT-GATTTTT----GCC--AA-TA-GTGTTATT-A-ACATA-GACT--ATTCT-GGTTATATGGGCTGGGACCCGGA-GGGTAG--GCCTAGTTCA--AATGGACTAGCCGCTAGG-CCTCAGTTA-----CTGCCCTCA---GAAT-CGCAGAATAAAGTATGAAAT-GTCTAAAGTTA-TAAAGAATAT--------GTAA-------TACTCGTATTAATTATTGATTTATTTATTATCCTTGTTTCTTCCATACCAGTTTTCTTTCTC-TAAGATCC--CCAAATATAGCT---
gi|6 : tatttagcgagttggtttCCT-AAAATGTTCTTTTTGATACAATCTTT--ATCATCTAAGTTTAGAT-AAAATCC-CCATCCA-TCCGA-AC-TTTTTTTTAAAAAAATGAAGTGTATATCTAGTGCATTTAGAAATGTTTCCAGTGGGCTATT-TTCCTGTGGGGCCTATATTTTCAT
gi|7 : TCTTA--AACATCTAAGTTAAAAA-AAAATCC-CCTTACA-TTCGA-AC-TTTTATTTTAAAAAGTGAAGTGTATGTCTAGTACATTTAGAAATGTCTCATGTGAGCCATT-TTTCTGTGGGGCCTATATTTTCATgttttgctttatttgactggtgtttccatgacaacagctaagaatataatttttatatacaacttattttaatactaaataggcaaacatgaagaaaatattacttgtaggagaatatcaaacaacccatttccagcaatttttggtccctacagataatcag
gi|8 : CTAG--CCTTAATTGATATGCTGCCCTCT---GAAT-CACAGAATAAATTCTGAAAT-GTCTCAAGTTA-TAAAGAACATTTCAAGAGGTGACTCAACATACTAGCAGTTATTATTGAAATATCTTTT---CTCATTACTTTAATTTCACTTTTCTATCTCGTATAATCT--CTAAATA--GCTTGCAAATGTAGATTTTAGAATAGTGTATTCATGATGT-----CATATTCATTCAGACGTCATTGAATTTCAAAGTT---A-ATCAATTATGA-CGGCATAGTTTCC-AACGA-----TCTGGTgttttgctttatttgactggtgtttccatgacaacagctaggaatataatttttatatacaacttattttaatgctaaataggcatacttgaagaaaatattacttgaaggataataccaaacatcccatttccagcaaattttggtcctaacagataatcagtgt
gi|9 : AAGTTTCAATATCAATTATGAACGTCATAG---CT-AAGAACTGCAACTGGTTTTG-TTTACTCCGCTCAT-TAGAATCATGTAGTTTTTT-----TTCACAT-----------ATACATTATTTAATTGAA-TGAAAAT-AT--TGTA--CAATTAAT-A--AGTGTAAGCCCTAATGCCTATGCAT---------AAG-ACAACAA-TT---ATA-TTGCTGGGCCCAAACTTG-C-CT
blockSeqs : G T T A T ACAT CA T G T GCAC T TT GGTT CTGGGAC T TT AC GACT C G GAT ATATG GCAG TCCC C TTT A C AA TTCAAGAG CTCAACA A G G T GTATA TA T TGC TGTAGA T T C AATTTC A TCA T A TTT G CTGCA T C C G T AGTGATCCATATCCTCTTATCTC T T ACAT AT AT G CT CTAATG C CTTTCACTC C A ACT A C CCC A A A C T C T T TCC GCA T T T TTA C AC T G G C A A CT A TC A GG CC C AAA A A G A A AT A G A T CA T C A A G ATT AATT A A T C CTT . CTGTTC T AAT AACA T A A C G C TA TGTCT GG . A T ATAC G TTA G CATG A AG T TA AA AG TACAT AGGCCCACA CC AAG G G TTC C G G T GA TTTGG TA G A G TAC TTCA TC A A AA T TAA G C G A G A A T AC AT A C T CC T G G A T C T T T GT G G G
blockSeqs : A G . T . . . . . G TATG . . TGG A . . AG CA C . CAG . T TCG C CCA . A T . . A G A G TAAG . T . T . A T AA A . T . . . . T . . . T TTCACAT T T TAT . . G . . C . . . A . . C A . . . . T T T . . T . . . . . . . C . . A CT . T A G . T . . A . A . . . . . . A T . . A G A . C . . . C . A C AG TG T . . . . C GT . . . . . AA G . . AC . AC T G C . . . C ATG G G CC C . . . G A TG . G G AGT TTCA T A A . . T . . G G G . C A TC C . C A . T . . T . . . T T AG G . G
blockSeqs : A . C . . . . . G AACA . . TG . . . . . . . TAA . A TCA T ATG . A G . . . . . C T . . . . . . . . . . . . . . . . . . T . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . C . . A . . . . . . A . . . . . . . . . . . G . . . . . A . C . . . G . C C G C . . . . . . T . . . . . A . . . A . . . . A . . . C ATG G G CC C . . . . . . . T . G ATC A . C . . . . . . . . . . . . A . C C . T . . C . . . A . TG . . .
blockSeqs : C . T . T . T CTG . C A . . . . . . . C . G G C C . . . A . A . . A . . . A
blockSeqs : . . . . A . . . C . T T C C . .
blockSeqs : . . . C . T T C A .
blockSeqs : . . . C . . . C . .
blockSeqs : . . . . .
blockSeqs : . . . . .
blockSeqs : .
blockSeqCons : C******************
originalCons : GTTGCGATTTTGTTTTTGCATTTTCACATTTGACATTCAGTTCGGTACGTGNATATCAATTTT-CANC-GATTCTT----GCC--AA-TA-ATNTTATT-A-ACGTA-GACC--ACTCT-GG--ACATGGGC------CTGGA-AGGTAG--GCCTAGTTCA--AAGGAACTAGCCGCTAGG-CCTCAGTTA-----CTGCCCTCG---GAAT-CGCAGAATAAATTNTGAAAT-GTCTNAAGTTA-TAAAGAATAT--------GTAA-------TACTCGTATTAATTATTGATTTATCTATTGTCCTCGTTTCTTTCATTCCANTTTTCTTTCTC-TAAGATCC--CTAAATATAGCT---AAAT-----TTTCAAAATAGTGTATTCATGATGTCGTCACATNTNCATTCAAACGTCATTGAA----AAAGTT---ATATCAATTATGA-CGTCATAG---CT-AAAGA-----ACTGGTTTTG-TTTACTCCG-TCAT-TAGAATCATGTAGTCTTTTAGTGGTCCATATC-------CTCACACATTATTTAATTGAATTGAAAA--AT--TGTA--CA--TAATGA--AGTGTAAGCC------CCTATGCAT---------AAG-ACAAAAA-CTAC-ATA-TTG-TGGG--CAAACTTG-C-CTGA-AGTT-CAATATGTTGTG---GTCGGC---AAAGCTGTTT-ATATC-AA---GCTA-G--TT-ACATTTC-TTTNATAAC-TGCAAAAAGTCT-TAGCAAAAAACTTATT-CATT-GCAAATAAAAATAATGTAG-ATCTACTG--AAATTTTCTT---GTTA-TCAAACC-AGCAACAAGTCT-AAT--TTCAGC-CAA-AA-GCTTGT-CAATN-TCATGATAAGGC-AA-GCTCATTATGC--A--TTCA----CTGANT-TTTAATTT-ACAA-TTCAT--TTT-TTCN-----ACCAAG-AATTAAGAAA--CGAAGTA-CTGAATTAATTAAGAAACAAAGTA-CTAGAGA-GTG-TCTTCTGCTGCATNACA-----CAAG--TTGT-TT-CCTACA-CTA-A-AATGTGTTTCTAACTA---AAAAGAG-TTTC---A-GTAAGGGAAA-TAACTTGTTAGAGATCAGCCATAAAC--TG-----GTACC---------CTGTTGACT-----------------C-TCGCTTCTCTC---TTTGTGTGTAGC-CACCAATCAAC-GGGGTACCAGTTTAAAA-TCAGCC-TAAAAGTG-ATTTTTTT----GTATTTTCTATGGCCTCTTAT-AAAAGAAATATTCTTAAGCCCATTCTATAATTTTGAGAAATTGTAGGTCAAGTATATGTGCTTCATTTTTT-CAAACAAAAGTAAAGAAATTCCTCAGA--CA-TTTTTT--AAAATACAA-G-AGAAAAAGGGGGTAA-TTATTTGCCATTTTTACTGAAAAA-CAGCCCT-AAAATGTTCTTTTTGNTACAATCTTA--AACATCTAAGTTTAAAA-AAAATCC-CCATACA-TCCGA-AC-TTTTTTTTTAAAAAGTGAAGTGTATGTCTAGTGCATTTAGAAATGTCTCCGNTGGGCCATT-TTCCTGTGGGGCCTATATTTTCATT
finalCons : GTTGCGATTTTGTTTTTGCATTTTCACATTTGACATTCAGTTCGGTACGTGNATATCAATTTT-CANC-GATTCTT----GCC--AA-TA-ATNTTATT-A-ACGTA-GACC--ACTCT-GG--ACATGGGC------CTGGA-AGGTAG--GCCTAGTTCA--AAGGAACTAGCCGCTAGG-CCTCAGTTA-----CTGCCCTCG---GAAT-CGCAGAATAAATTNTGAAAT-GTCTNAAGTTA-TAAAGAATAT--------GTAA-------TACTCGTATTAATTATTGATTTATCTATTGTCCTCGTTTCTTTCATTCCANTTTTCTTTCTC-TAAGATCC--CTAAATATAGCT---AAAT-----TTTCAAAATAGTGTATTCATGATGTCGTCACATNTNCATTCAAACGTCATTGAA----AAAGTT---ATATCAATTATGA-CGTCATAG---CT-AAAGA-----ACTGGTTTTG-TTTACTCCG-TCAT-TAGAATCATGTAGTCTTTTAGTGGTCCATATC-------CTCACACATTATTTAATTGAATTGAAAA--AT--TGTA--CA--TAATGA--AGTGTAAGCC------CCTATGCAT---------AAG-ACAAAAA-CTAC-ATA-TTG-TGGG--CAAACTTG-C-CTGA-AGTT-CAATATGTTGTG---GTCGGC---AAAGCTGTTT-ATATC-AA---GCTA-G--TT-ACATTTC-TTTNATAAC-TGCAAAAAGTCT-TAGCAAAAAACTTATT-CATT-GCAAATAAAAATAATGTAG-ATCTACTG--AAATTTTCTT---GTTA-TCAAACC-AGCAACAAGTCT-AAT--TTCAGC-CAA-AA-GCTTGT-CAATN-TCATGATAAGGC-AA-GCTCATTATGC--A--TTCA----CTGANT-TTTAATTT-ACAA-TTCAT--TTT-TTCN-----ACCAAG-AATTAAGAAA--CGAAGTA-CTGAATTAATTAAGAAACAAAGTA-CTAGAGA-GTG-TCTTCTGCTGCATNACA-----CAAG--TTGT-TT-CCTACA-CTA-A-AATGTGTTTCTAACTA---AAAAGAG-TTTC---A-GTAAGGGAAA-TAACTTGTTAGAGATCAGCCATAAAC--TG-----GTACC---------CTGTTGACTC------------------TCGCTTCTCTC---TTTGTGTGTAGC-CACCAATCAAC-GGGGTACCAGTTTAAAA-TCAGCC-TAAAAGTG-ATTTTTTT----GTATTTTCTATGGCCTCTTAT-AAAAGAAATATTCTTAAGCCCATTCTATAATTTTGAGAAATTGTAGGTCAAGTATATGTGCTTCATTTTTT-CAAACAAAAGTAAAGAAATTCCTCAGA--CA-TTTTTT--AAAATACAA-G-AGAAAAAGGGGGTAA-TTATTTGCCATTTTTACTGAAAAA-CAGCCCT-AAAATGTTCTTTTTGNTACAATCTTA--AACATCTAAGTTTAAAA-AAAATCC-CCATACA-TCCGA-AC-TTTTTTTTTAAAAAGTGAAGTGTATGTCTAGTGCATTTAGAAATGTCTCCGNTGGGCCATT-TTCCTGTGGGGCCTATATTTTCATT
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|12 ): TGTATTTTCATGTTTTGCTTTATTTGATTGGTGTTTCCATGACAACAGCTATAGATACATATATGTAGGAATTTTTATATACAACTTATTTTAATACTAAATAGGCATACTTGAGAATTACTCGTAGGAGAATATCAAACATC
Unaligned ( gi|14 ): GGAGACTATATTTTCATTTGTGAGAATATGAAACATTCCATTTCCAGCAAATTTTGGTCCTTACAGATAATCAGTGT
Alignments
lowQualScore : 1 1 1 2222 11 1 1 222222 1 11 11111 3333333 1 11 1111 22222 1111 1111 22222222 3333333 11111 11 111 444444 1 333333 111 1 111 22222 1 1 1 66666666666666666666666 333333 11 11 11 222222 444444444 1 1 222 1 1 111 1 1 1 1 111 111 1 1 111 1 11 1 1 1 1 1 11 11 11 111 1 1 1 11 1 1 1 1 11 1 1 11111 2222 1 1 1 111 1 222222 111 1111 1 1 1 1 11 22222 11 1 1 1 1111 111 1 22222 1 11 22 11111 111111111 3333333333333333333 111 111 1 1 11 22222 1 1111 11 11 1 333 2 1 1 11 1
lowQualScore : 2 0 1 0 1 0 1111 33 0 0 1 555555 0 33 44444 7777777 0 0 33 55 9999 0 2 8 555 00000 7777 2222 4 888 6 7 77 99999999 2222222 3 2 6 1 44444 33 7 777 000000 2 1 1 444444 3 777 3 0 444 8 00000 3 0 0 0 3 88888888888888888888888 7 0 0 3 111111 33 33 2 33 888888 2 000000000 0 0 222 0 0 666 3 0 0 3 0 7 3 3 777 777 3 0 0 0 777 0 33 0 0 1 0 0 3 55 0 33 0 3 22 33 1 777 0 3 0 3 0 33 0 0 0 0 11 3 0 0 3 2 88888 1111 1 0 0 0 0 444 0 666666 6 333 8888 3 0 0 0 0 2 00 55555 33 0 0 0 4444 2 777 0 22222 0 55 3 11 44 55 00000 666666666 2222222222222222222 0 999 2 2 888 2 5 0 0 22 77777 0 33 0 0 0 1 2 999 00 2222 00 3 9 0 0 33 0 333 0 0 2 6 2 0 2 3 33 99 0 8 3 1 99 0 1 8 0 8 1 8 8 8 1 3 55 2 0 2
lowQualScore : . . . . . . .... .. . . . ...... . .. ..... ....... . . .. .. .... . . . ... ..... .... .... . ... . . .. ........ ....... . . . . ..... .. . ... ...... . . . ...... . ... . . ... . ..... . . . . . ....................... . . . . ...... .. .. . .. ...... . ......... . . ... . . ... . . . . . . . . ... ... . . . . ... . .. . . . . . . .. . .. . . .. .. . ... . . . . . .. . . . . .. . . . . . ..... .... . . . . . ... . ...... . ... .... . . . . . . .. ..... .. . . . .... . ... . ..... . .. . .. .. .. ..... ......... ................... . ... . . ... . . . . .. ..... . .. . . . . . ... .. .... .. . . . . .. . ... . . . . . . . . .. .. . . . . .. . . . . . . . . . . . .. . . .
lowQualScore : 0 8 0 0 0 0 2222 88 0 0 0 222222 0 88 00000 5555555 0 2 88 88 5555 2 5 0 444 00000 2222 0000 2 777 7 5 00 00000000 5555555 2 5 5 0 00000 88 0 555 777777 0 0 0 777777 2 555 2 0 000 0 00000 0 0 0 0 2 55555555555555555555555 0 8 8 2 888888 88 88 5 88 888888 5 000000000 0 0 000 0 0 222 2 0 0 3 0 0 2 2 555 555 2 8 0 0 555 0 88 0 0 0 0 0 2 55 0 22 2 2 55 88 2 555 0 2 0 2 0 88 0 0 0 0 00 2 0 0 2 5 55555 2222 0 0 0 0 2 555 0 000000 5 888 2222 2 0 0 0 0 5 88 00000 88 0 0 0 2222 5 555 0 22222 0 88 0 88 22 55 00000 000000000 0000000000000000000 1 111 5 5 222 5 0 0 0 55 88888 8 55 2 8 0 2 5 000 55 2222 22 2 2 8 2 88 0 555 0 0 5 5 5 0 5 5 88 22 2 0 2 0 22 8 4 0 8 0 0 0 0 0 4 2 22 5 0 5
consensus : GTTGCGATTTTGTTTTTGCATTTTCACATTTGACATTCAGTTCGGTACGTGNATATCAATTTT-CANC-GATTCTT----GCC--AA-TA-ATNTTATT-A-ACGTA-GACC--ACTCT-GG--ACATGGGC------CTGGA-AGGTAG--GCCTAGTTCA--AAGGAACTAGCCGCTAGG-CCTCAGTTA-----CTGCCCTCG---GAAT-CGCAGAATAAATTNTGAAAT-GTCTNAAGTTA-TAAAGAATAT--------GTAA-------TACTCGTATTAATTATTGATTTATCTATTGTCCTCGTTTCTTTCATTCCANTTTTCTTTCTC-TAAGATCC--CTAAATATAGCT---AAAT-----TTTCAAAATAGTGTATTCATGATGTCGTCACATNTNCATTCAAACGTCATTGAA----AAAGTT---ATATCAATTATGA-CGTCATAG---CT-AAAGA-----ACTGGTTTTG-TTTACTCCG-TCAT-TAGAATCATGTAGTCTTTTAGTGGTCCATATC-------CTCACACATTATTTAATTGAATTGAAAA--AT--TGTA--CA--TAATGA--AGTGTAAGCC------CCTATGCAT---------AAG-ACAAAAA-CTAC-ATA-TTG-TGGG--CAAACTTG-C-CTGA-AGTT-CAATATGTTGTG---GTCGGC---AAAGCTGTTT-ATATC-AA---GCTA-G--TT-ACATTTC-TTTNATAAC-TGCAAAAAGTCT-TAGCAAAAAACTTATT-CATT-GCAAATAAAAATAATGTAG-ATCTACTG--AAATTTTCTT---GTTA-TCAAACC-AGCAACAAGTCT-AAT--TTCAGC-CAA-AA-GCTTGT-CAATN-TCATGATAAGGC-AA-GCTCATTATGC--A--TTCA----CTGANT-TTTAATTT-ACAA-TTCAT--TTT-TTCN-----ACCAAG-AATTAAGAAA--CGAAGTA-CTGAATTAATTAAGAAACAAAGTA-CTAGAGA-GTG-TCTTCTGCTGCATNACA-----CAAG--TTGT-TT-CCTACA-CTA-A-AATGTGTTTCTAACTA---AAAAGAG-TTTC---A-GTAAGGGAAA-TAACTTGTTAGAGATCAGCCATAAAC--TG-----GTACC---------CTGTTGACT-----------------C-TCGCTTCTCTC---TTTGTGTGTAGC-CACCAATCAAC-GGGGTACCAGTTTAAAA-TCAGCC-TAAAAGTG-ATTTTTTT----GTATTTTCTATGGCCTCTTAT-AAAAGAAATATTCTTAAGCCCATTCTATAATTTTGAGAAATTGTAGGTCAAGTATATGTGCTTCATTTTTT-CAAACAAAAGTAAAGAAATTCCTCAGA--CA-TTTTTT--AAAATACAA-G-AGAAAAAGGGGGTAA-TTATTTGCCATTTTTACTGAAAAA-CAGCCCT-AAAATGTTCTTTTTGNTACAATCTTA--AACATCTAAGTTTAAAA-AAAATCC-CCATACA-TCCGA-AC-TTTTTTTTTAAAAAGTGAAGTGTATGTCTAGTGCATTTAGAAATGTCTCCGNTGGGCCATT-TTCCTGTGGGGCCTATATTTTCATT
Reference ( family-1091 ) : GTTGCGATTTTGTTTTTGCATTTTCACATTTGACATTCAGTTCGGTACGTGNATATCAATTTT-CANC-GATTCTT----GCC--AA-TA-ATNTTATT-A-ACGTA-GACC--ACTCT-GG--ACATGGGC------CTGGA-AGGTAG--GCCTAGTTCA--AAGGAACTAGCCGCTAGG-CCTCAGTTA-----CTGCCCTCG---GAAT-CGCAGAATAAATTNTGAAAT-GTCTNAAGTTA-TAAAGAATAT--------GTAA-------TACTCGTATTAATTATTGATTTATCTATTGTCCTCGTTTCTTTCATTCCANTTTTCTTTCTC-TAAGATCC--CTAAATATAGCT---AAAT-----TTTCAAAATAGTGTATTCATGATGTCGTCACATNTNCATTCAAACGTCATTGAA----AAAGTT---ATATCAATTATGA-CGTCATAG---CT-AAAGA-----ACTGGTTTTG-TTTACTCCG-TCAT-TAGAATCATGTAGTCTTTTAGTGGTCCATATC-------CTCACACATTATTTAATTGAATTGAAAA--AT--TGTA--CA--TAATGA--AGTGTAAGCC------CCTATGCAT---------AAG-ACAAAAA-CTAC-ATA-TTG-TGGG--CAAACTTG-C-CTGA-AGTT-CAATATGTTGTG---GTCGGC---AAAGCTGTTT-ATATC-AA---GCTA-G--TT-ACATTTC-TTTNATAAC-TGCAAAAAGTCT-TAGCAAAAAACTTATT-CATT-GCAAATAAAAATAATGTAG-ATCTACTG--AAATTTTCTT---GTTA-TCAAACC-AGCAACAAGTCT-AAT--TTCAGC-CAA-AA-GCTTGT-CAATN-TCATGATAAGGC-AA-GCTCATTATGC--A--TTCA----CTGANT-TTTAATTT-ACAA-TTCAT--TTT-TTCN-----ACCAAG-AATTAAGAAA--CGAAGTA-CTGAATTAATTAAGAAACAAAGTA-CTAGAGA-GTG-TCTTCTGCTGCATNACA-----CAAG--TTGT-TT-CCTACA-CTA-A-AATGTGTTTCTAACTA---AAAAGAG-TTTC---A-GTAAGGGAAA-TAACTTGTTAGAGATCAGCCATAAAC--TG-----GTACC---------CTGTTGACT-----------------C-TCGCTTCTCTC---TTTGTGTGTAGC-CACCAATCAAC-GGGGTACCAGTTTAAAA-TCAGCC-TAAAAGTG-ATTTTTTT----GTATTTTCTATGGCCTCTTAT-AAAAGAAATATTCTTAAGCCCATTCTATAATTTTGAGAAATTGTAGGTCAAGTATATGTGCTTCATTTTTT-CAAACAAAAGTAAAGAAATTCCTCAGA--CA-TTTTTT--AAAATACAA-G-AGAAAAAGGGGGTAA-TTATTTGCCATTTTTACTGAAAAA-CAGCCCT-AAAATGTTCTTTTTGNTACAATCTTA--AACATCTAAGTTTAAAA-AAAATCC-CCATACA-TCCGA-AC-TTTTTTTTTAAAAAGTGAAGTGTATGTCTAGTGCATTTAGAAATGTCTCCGNTGGGCCATT-TTCCTGTGGGGCCTATATTTTCATT
gi|1 : GTTGCGATTTTCTTTTT-CATTTTCACATTTAACATTCAGTTCGGTACGTGCATATCAATTGT-CAGT-GATTTTT----GCC--AA-TA-ACTTTACTGA-AC-TA-GACC--ACTCT-GA--ATATGGAC------TTGGA-AGGTAG--GCCTAGTTCA--AAAGAACTAGCCGCTAGG-CCTCAGTTA-----CTGCCCTCG---GAAT-GGCAGAATGAATTATAAAAT-GTCTTAAGTTG-TAAAGAATAT--------GTAA-------TACTCATATTAATTATTGATTTATCTATTGTCCTCGTTTCTTTCATTCTAATTTTCTTTCTC-GAAGATCC--CTGAATACAGCT---AAA------TTTCAAAATAGTGTATTCATGATGTCGTCACAAGTATACTCAAACGTCATTG------AAAGTC---ATATCAATTATGA-CGTCATAG---CT-AAAGA-----ACTGGTGTTG-TTTTCTCCA-TCAT-TAGAATCATGTAGTCTTTTAGTGGTCCATATC-------TTCACATACCATCTGATTGAATTGAAAT--ATAGTGTA--CA--TAATGA--AGTGTAAGCC------CCTATGCAT---------CAG-ACGAAAA-CTAC-ATA-TTG-TGGA--CAAACTTG-C-CTGA-AGTT-CAATATGTTGTG---GTTGGC---AAAGCTGCTT-ATATC-AA---GCTA-G--TT-ACATTTC-TTTGATAAC-TACAAAAAGTCT-GTGC-AAAAACGTATT-CATT-GCAAATAAAAATAATGCAG-ATCTACTG--ATATTTTCTT---GTTA-TCAAACC-AGCAACAAGTCC-AAT--TTCAGC-CAA-AA-GCTTGT-CAATT-TCATGATAAGGC-AA-GCTCATTATGCAAA--TTTA----CTGAAT-TTTAATCT-ACAA-TTAAT--TTTATTCA-----A-CATG-AATTAAGAAA--CAAAGTA-CTGAATCAATTAAGAAACAAAGTA-CTAGAGA-TTG-TCTTCTGCTGCATGACA-----CAAG--TTGTCTT-CCTACA-CTA-A-AATGTGTTTCTAACTT---AAAAGAG-TTTC---A-GTATGGGAAA-TAACTTGGTAGAGATCAGCC-CAAAC--TG-----GTACC---------CTGTTGACTCCTTTTTTCCCTTTTGAC-TCTTTTCTCTT---TTTGTTTTTAG--CACAAATCAAT-GGGGTGCCAGTTTAAAA-TCAGCC-TAAAAGTG-ATTTTTTT----GTATTGTCTATGGCTTCTTGT-AAAAGAAATATTCTTAAGCCCATTCTATATTTTTGAGAAATTGTAGATCAAGTATATGTGT----TTTTTT-CAAACAAAAGTAA-----------AGA--CA-TGTTTTA-AAAATACAATG-AGAGAAAGGAGGTAA-TTATTTGCCATTTTTATTGAAAA-------CT-AAAATTTTTTTTTTGTTACAATCTTA--AACATCTAAGTTAAAAA-AAAATCC-CTATACA-TCCCA-TC-TATTTTTTTAAAAAGTGAAATGTATATCTAGTGTATTTATAAATGTCTCCATTGGGCTATG-TTCCTGTGGAGACTATATTTTCATT
gi|10 : ACAGTGAGTTGGG---GTTTATCTCAATTTTTCAACTGACTCTTACATGCCCAAA-TAGATTTTATT-GCAC-TATGGCCTTACTTTTGG--ACATGGGA------CTGCA-AAGTGGTTGTCT--TTGACTAAGTAACTCGCCGCTAGGGCCTT--TTA-----TTGCTCTCGCAGGAA----CTGAA-AAATTTTTAAATAGTCTCA-GTTAATAAAGAATA
gi|11 : ATTGGACATTCAGTTTGGTGTCTGGATATCACATTC-CATC-TATCCTT----ATC--AATTA-ATGTTATT-T-ATGTA-GACC--GCTTT-TG--ACATTGA-------CTGGATATATAG--TTCCACTT------GGAA--AGCTGATAGG-CTTGATATA-----CAGCCCCCT---GAATCCCCAAAACAAATT-----AT-ATCC--AGTTT-TAAATAATAT--------
gi|13 : tTGTTTTTGCATTTTCATATTTAACATTCAGTTCGGTACGTGAATATCA
gi|15 : tatttagtatgttggttcattacttgaatgAAAC--TG-----GTATC---------CTGTTGGCT-----------------C-TCGCTTCTCTCAAGTTTGCGTGTAG--CACCAATCAATGGGGGTACCAG
gi|16 : AC--TG-----GTACC---------CTGTTGACT-------------------TCGCATCTCTTATGTTTGTGTGTAGC-CACCGATCAGC-GGGGTACCAGT
gi|17 : AAC--TG-----GTACC---------CTGTTGACT-------------------TCACATCTCTTATGTTTCTGTGTAGC-CACCAATCAGT-GGGGTACCA
gi|18 : t---TTTGTGTGTAGC--ACCAATCAAC-GAGGTACC
gi|19 : ctcaagAAC--TG-----ATATC---------CTGTTGGCT-----------------C-TCGCTTGTCTC---T
gi|2 : GAACACAATCCAAAAT-GTCTAAAGTTG-TAAAGAATAT--------GTAA-------CAATCGTATTAATC--T-ATTTATTTATTGTCCTCGTTTCTTTCCTTCCATTTTTCTTTCTC-T----TTCTACTAAATGTATTT---AAAT-----TTTCAAAATAGTGTATTCATGATGTTGTCACATTTCCATTCTAACGTCATTGAA----A--GTT---ATATCAATTATGA-CGTCATAG---CT-CAAGA-----ACTGGTTTTG-TTTAATCCG-TCAT-TAGAATCATGTAGTCTTTTAGTGATCCATATCCTCTTATCTCACACATTATTTAATTGAATTGAAAAACAT--TGTA--CA--TAATGA--AGTGTAAGCC------CCTATCCAT---------AAG-ACAAAAA-CTA--ATA-TTT-TAGG---AAACGTG-C-CTTA-AGTT-AACCA---TATG---GTCGGC---AAAAC-------TATC-AA---ACTA-G--CT-AGATTTC-TTTGACAAA-TACAAAAAGTCT-TAATAAAAAA---ATT-CATT-GGAAATGAAAATACTGTAG-ATCTACTG--AAGTTCTCTT---GTTA-TAAAACG-ATCAGCAAGTCTAAAT--TTCAGT-CAA-AA-GCTTGT-CAATA-GCAAGATAAGGC-AA-GTTCATTATGC--ATTTTCA----CTGAAT-CTAAATTT-ACAA-TTCAT--CTT-TTTA-----ATCAAG-AATTAAGAAA--TGAAGTA-CTAAATTAATTAAAAAACAAAGTA-CTACATA-GTG-TCTCCTGCTACAGTACATGTCTCAAT--TTGT-TTACCTACA-CT--A-AATTTGTTTCTAACTA---AAACGAG-TTAC---A-GTAAGGAAAA-TAAGTTGTTAGATATCAACC-TAAAC--TG-----GTACT---------ATGTTGAAT-----------------C-TTGCGTCTTTT---TTT-----TAG--CACCAACCAAC-TGGGTAACAGTTTAAAA-TCAGCCTTAAAAGTGAAATTTTCT----ATATTTTTGATAGCCTCTTATGAAAAAAGGTATTCCTACGCACATTCTATAATTTTGAGATACTGTAAGTCAAACATATGTGCATC-TTTTTT-TAAAT-AAAGTAAAGGAATTCCTCAGA--CA-TTATTC---AAATACAAGG-AGAAAAAAAAG-------------------------AAAC-CAGCCCT-AAAATGTTCTTTTTGTAACAATATTA--Aagt
gi|20 : cattAC--TG-----GTATC---------CTGTTGGCT-----------------C-TCGCTTCTCTC---
gi|21 : AC--TG-----GTACC---------CTGTTGA-------------------C-TCGCTTCTCTC---gagt
gi|3 : TAG---CTGAAAGA-----ACTG---TTGCTTTACTCAG-TCATGTAGAATCATGTAG-CTTTT------------------------CACAT------ATTGAATTGAAAA---T--TGTAATTA--TAATGACTGGTGTAAGCC------A--ATGCACCTTTCACTCAAGCACAAAAAACTACTATAATTG-TAAG--CAA--TTGACACTGACAGTTTCAA-ATGTTA-----GTCGGTGCAAAAGCTGTTT-ATATC-AATTAGCTACGACTT-ACATTTCGTTTCATAAC-TGCAAAAAGTCTATAGCAAAAAACTTATT-CAT--GCAAATAAAAATAATGTA--ATCTACTG--AAATTTTCTTAAAGGTA-TCAAACCGAGCAACA-GTCT-AAT--TTCAGC-CAA-AAAGCTTGT-CAATCATCATGA--AGGC-AAAGCTC--CAT----A--TTCAAATTCTGACT-TTTTATTTTACAACTTTAT--GTC-TTCCTGTTCACCA-G-AATAATGAAA--C-AAG-A-CTGAATTGAATAAGAAACAAAGTA-CTAGAGA-GTG-CTTTCTCGAGCATT-CA-----AAAG--TTGT-TT-CCTACA-CTATACAAGGT-TTTCTAACTATTAAAAAGAGGTTTC---ACGTAAGGGAAA-TG-------------CAGCAATAAAC--TGTACATGTACC---------CTGTGGACT-----------------CCTCGTCTCTTTC---TTTGTTTTTAGC--ACAAATCAAT-GGG-TACCAGTTTAAAA-TCAGCC-TAAAAATG-ATTTTTTTTTTGGTATTCTCTATGGCCTCTTAT-AAAAGAAATATGCTTGAGCCCATTCTATAATTTTGAGAAGTTGTAGGTCAAGTATATGTGCTTCATTTTTT-AAAACAAAAGTAAAGAAATTCTTCAGA--CATTTTTTT--TAAATACAA-GCAGAAAAA-GGGGTAA-TTATTTGACATTTTTACTGAAAAA-CAACCCT-ACAATGTGCTTTTTGATACAATCTTA--AACATGTAAGTTTAAAA-AAAA----ACATACA-TCCGA-AC-TTTTTTTCTTAAAAGTGAAGTGTATGTCTAGTGCATCTAGAAA--TTTCCGTTGG--CATTGTCCCTGT-GGGCCTATGTTTTCATaagt
gi|4 : TT-CAATATGTTGTGTCCATCGGC---AAAGCTGTTTTATATCTAA---GCTA-G--TTTACATTTC-TTTCATAACCTGCAAAAAGTCT-TAGCAAAAAACTTATTACATTCGTAAATAAGA-TAATGTAGGATCTACTGCCAAATTATCTT---ATTAATCAA-CC-TGCAACAAGTCT-AATATCTCAGCACAAGAA-GCCTGTTCAAAG-TAATTATAAGGCCAA-GCTCATTATGC--A--CTCA----CTGACTATTTAATTA-GCAA-TTCATCTTTT-TTCC-----ACCAAATAATTAAGAAAAACAAAGTAACTGAATTAATTAAGAAACAAAGGAACTAGAGACGTGGTCTT-TGCTGCATGTCA-----CAAGGGCTGT-TT-ACTACATCCA-A-AATGTGTTTCTAACTA---TCAAGAG-TTTCCATG-GTAAGGGAAAATAACTTGTTAGAG-TCAGC-ATAACCAGTG-----GTACCAGGCCCACACTGTTGACT-----------------C-TTG-TTCTCTT---CTTGTTTTGAGTTCAA-AATCAAT-GGGGGACCAGTTTAAAAGTCAGCC-TCAAAGT---TTTTTTT-------TTTTTTA--------------AAGAAATTTTCTTTACCCAATTCTATAATGTT-AGAG---------CAAGTATATGTGCTTCATTTTTTTCAAACAAAAGTAACGAAATTCCTCAGAAACA-TTTTTTTAAAAATACAA-G-C--AAAAGGGGGTAAATTATTTGCCAATTTTTCTGAAAAATCAGCCCTAAAAATGTT-TTTTTGCTACAATCTTACCAATATA-AAGTTTAAAAGAAAATCCGCCATTCATTCCGACACTTTTTTTTTTTTAAAGTGAAATGTATGTCTAGattg
gi|5 : GTTGCGATTTTGTTTTTACATTTTCACATTTGACGTTCAGTTCGATACGTGCATATCAATTTT-CACT-GATTTTT----GCC--AA-TA-GTGTTATT-A-ACATA-GACT--ATTCT-GGTTATATGGGCTGGGACCCGGA-GGGTAG--GCCTAGTTCA--AATGGACTAGCCGCTAGG-CCTCAGTTA-----CTGCCCTCA---GAAT-CGCAGAATAAAGTATGAAAT-GTCTAAAGTTA-TAAAGAATAT--------GTAA-------TACTCGTATTAATTATTGATTTATTTATTATCCTTGTTTCTTCCATACCAGTTTTCTTTCTC-TAAGATCC--CCAAATATAGCT---
gi|6 : tatttagcgagttggtttCCT-AAAATGTTCTTTTTGATACAATCTTT--ATCATCTAAGTTTAGAT-AAAATCC-CCATCCA-TCCGA-AC-TTTTTTTTAAAAAAATGAAGTGTATATCTAGTGCATTTAGAAATGTTTCCAGTGGGCTATT-TTCCTGTGGGGCCTATATTTTCAT
gi|7 : TCTTA--AACATCTAAGTTAAAAA-AAAATCC-CCTTACA-TTCGA-AC-TTTTATTTTAAAAAGTGAAGTGTATGTCTAGTACATTTAGAAATGTCTCATGTGAGCCATT-TTTCTGTGGGGCCTATATTTTCATgttttgctttatttgactggtgtttccatgacaacagctaagaatataatttttatatacaacttattttaatactaaataggcaaacatgaagaaaatattacttgtaggagaatatcaaacaacccatttccagcaatttttggtccctacagataatcag
gi|8 : CTAG--CCTTAATTGATATGCTGCCCTCT---GAAT-CACAGAATAAATTCTGAAAT-GTCTCAAGTTA-TAAAGAACATTTCAAGAGGTGACTCAACATACTAGCAGTTATTATTGAAATATCTTTT---CTCATTACTTTAATTTCACTTTTCTATCTCGTATAATCT--CTAAATA--GCTTGCAAATGTAGATTTTAGAATAGTGTATTCATGATGT-----CATATTCATTCAGACGTCATTGAATTTCAAAGTT---A-ATCAATTATGA-CGGCATAGTTTCC-AACGA-----TCTGGTgttttgctttatttgactggtgtttccatgacaacagctaggaatataatttttatatacaacttattttaatgctaaataggcatacttgaagaaaatattacttgaaggataataccaaacatcccatttccagcaaattttggtcctaacagataatcagtgt
gi|9 : AAGTTTCAATATCAATTATGAACGTCATAG---CT-AAGAACTGCAACTGGTTTTG-TTTACTCCGCTCAT-TAGAATCATGTAGTTTTTT-----TTCACAT-----------ATACATTATTTAATTGAA-TGAAAAT-AT--TGTA--CAATTAAT-A--AGTGTAAGCCCTAATGCCTATGCAT---------AAG-ACAACAA-TT---ATA-TTGCTGGGCCCAAACTTG-C-CT
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|12 ): TGTATTTTCATGTTTTGCTTTATTTGATTGGTGTTTCCATGACAACAGCTATAGATACATATATGTAGGAATTTTTATATACAACTTATTTTAATACTAAATAGGCATACTTGAGAATTACTCGTAGGAGAATATCAAACATC
Unaligned ( gi|14 ): GGAGACTATATTTTCATTTGTGAGAATATGAAACATTCCATTTCCAGCAAATTTTGGTCCTTACAGATAATCAGTGT