lowQualScore : 4444444444444444 11 2222222222222 111 11 88888888888888888888888888888888888888888888888 8888888888888888888888888 111
lowQualScore : 0 44 777 6666666666666666 4 00 4 8888 0 9999999999999 55 222 2 11 55 4 88 5 44444444444444444444444444444444444444444444444 2 77777 7777 6666 4 8888888888888888888888888 0 44 55 000 3 66 3
lowQualScore : . .. ... ................ . .. . .... . ............. .. ... . .. .. . .. . ............................................... . ..... .... .... . ......................... . .. .. ... . .. .
lowQualScore : 7 66 888 6666666666666666 0 33 0 9999 5 5555555555555 55 555 3 00 66 0 33 0 55555555555555555555555555555555555555555555555 5 99999 1111 1111 6 7777777777777777777777777 9 22 99 222 8 55 3
consensus : TACTGTAAAC-CAACT---TT-TATTT--CGC-GGC-TAC-TTTAT-TTC---GCGATTCACCTGTGGT---A---A-----ACTGG--TT---CGCGGCG--AG-TA-ATTTT-CGC-GATCG---AGCNTTTTTCATT---AT---TT----CAT-------TCA-TTCAAGGACTGGTTCGCGAC----GAGAAAT----ATT-CG-CGACGATG--AGG---TTCT--CGCAAA----TCTCGC--GAAA-TTTTCT-CGCACGCGAATGAA-AGTTGGTTTACA
Reference ( gi|4 ) : TGCTGTAAAC-CAACT---TT-TTTTTC-CGC-AGC-TAC-TTCAT-TTT---GCGATTCACCTGTGGT---T---A-----ACTGG--TT---TGCAGCG--AG-TA-ATTTT-TGC-AATTG---AGCCTTTTTCATTCCCAT---TT----CAT-------TCA-TTCAAGGACTGGTTTGCGAC----AAGAAAT----ATT-TG-CGACAATG--TAG---CTAT--TGCACA----TCTTGC--AAAA-TTTTCT-CACACGCAAATAGA-AGTTGGTTTACATT
gi|2 : TACTGTAAAC-TAATT---TT-TATTT---GT-CGT-TAC-TTTAT-TTC---GTGATTTACCTATAAT---TGTAA-----ACTGG--TT---TGCAGTG--GA-TA-ATTTT--GC-GATTG---AGCATTTGTCAT----ATAA-TTATGGCAG-------ACA-GTCAAGGACTGGTTCACGAC----AAGCAAT----ATT-TG-TGATGATG--AGG---TTCT--CACAAA----TCTCGC--AAAATTTTTCTCCCCACTCAAATGGA-AGTTGGTTTACA
gi|1 : TGGTGCAAGA-TAATC---TT-GTATTCGCAC-AG---AC-TTTCT-TGC---GCGATTTATCTGTCAT---A---A-----GGTGG--TT---CGCAACG--AC-TA-ACTAT-TGCGAATCAGATAGCCTTAAACA---AAAA---TG----AA---------CA-TCAAAGGACTAGTTTAAAGC----GATAACT----ATT-CG-CGACAATG--AAG---TTCT--CGCAAA----CTTTGCGAAAAA-TTgt
gi|9 : aaTACTGTAAAC-CAACTAAATTATATTT---GC-AACGTACGTTCTC-TTTTTAACGATTTACCAATAGT---A---A-----GCTGA--TTCA-TG-ACCA--AGATA-ATCTTAAAC-AAATG------------------CGT---TA----CA--------TCA----AAGGACTGGTTCATGGC----GGAAAAT----ATA-TG----CAATG---AA---C----------------CTCGC--GAAA-ATTTCT-TGCACACGAATTAA-AGGTGGCTTACAgatggtttacgtgaaacatactggtgcatatgattacagt
gi|5 : aCTGTAAAC-CAACT---TT-T--------A-ATC-TAC-TTTAT-TTC---GCGATTCACGTGTGGT---A---A-----ACTCG--TT---CGCGGCG--AT-TA-ATTTT-CGC-GATCA---AGAACTTTTCATTTCTAT---TT----CAT-------TCA-TTCAAGGACTGGTTCGCGATAAAAAAAAAAT----ATT-CG-CAACGGTA--AGG---TTCT--CGCGAA----TCTCGC--AAAA-TTTTCT-CTAACGCGAACAAAGGGTTTGTTTACAgt
gi|7 : CTGTAAAC-TAACT---GT-ATT----CGT-GGC-TAC-TTTAT-TTC---ACGATCCACCTGAGGT---A---A-----ACTGG--TT---CATGGCG--AG-TA-ATTTT-CAC-GATTG---AGTCTTTTTCACTCCTATGAATT----TAT-------TCA-T--------TGGTTTACAAC----GAGAAAT----ATT-CT-CGATGATG--AGG---TTCA--CGCGAA----TTTCGC--AAAA-TATTTT-AACATGCAAATGAA-AGTTGGTTTAata
gi|10 : aCTGTAAAT-CAACT---TT-TATT---CGC-AGC-TAC-TT--T-TTT---GCAATTCGC-TGTGGTAACT---AG----ACTGG--TT---CATAACG--AG-TA-ATTTT-CGC-AATCG---ATCTTTTTTT-TTC---T---TT----CTT-------TTT-TT----------TTTTTATT----AAGAAAT----ATT-CA-CGAC-ATG--GAG---GT--------------TCTCGC--GAAA-AATTCT-TGTACGCGAATAAG-ATTTGGTTTACAtg
gi|3 : aCTGTAAAC-TAATT---TT-TTTTGT-CGT-------T-TTTAT-TT----G-GATTTACCTATATT---T---GTAAACACTGG--TGCAGTGCAACGGAAG-TACATTTT-TGC-A-TTG----GCATTCTTCAT----AT---AT-----ATGGCGGGACCAGTCCAAGGACTGGTTCACGAC----AAGCAATCATCATTGTG-CGATGATC--GGG---TTCT----CACAT---TCTCGC---ACA-TTTTCTCCCCACTC-AATGGA-AGTTGGTTgt
gi|14 : aCTGTAAAAACAACT---TT-TATGTC-GGTTGGC-TAC-TTTAT-TTT---GCG-TTCACTTG-AGT---A---A-----ACTGGGTTT---CCCGGCGGAAG-TA-ATTTT-Ta
gi|12 : tcAAAA-TAACT---TT-CATTCA-TGA-AG---AC-TTTGT-TTT---GTAAT--ACCAGTGAT---G---A-----ACTGG--TT---TGTGGTG--AC-TA-ATTCT-ctgctggatcaag
gi|8 : -AGC-TAC-TTTTTATTT---ATGATTTATCAGTGAT---A---A-----AGTGG--AT---CAAGGCA--AT-TA-ATGTT-TGT-GATCA---AGaatgaccaagataatcatcaaaacaatatgagaggcactaaagcacttgtttgcaa
gi|11 : taatgtaCA-CTAAAGGACTGGTTTGTGGC----TA-AAAG----GTT-TT-C----ATG---AA---C----------------CTTGG--AAAA-ATTTCT-CGCATGTGAATGGA-TATTGGTTTACAattatcttaaacaaatacgagaaacacaggactggtttacagtgagaaatatagacgatgactaagttcttctggacctcacgtaaatttctcatacatgaattagtgttggtttatagt
gi|13 : acacaacttttttacaattgctagtgatgaaatggttcccataactaaatgttcttgattaagataatctcaaacaaagatgaggga-TTCAAGGACTGCTTCATGAT----AAGAAGT----ATT-CG-CAACAATG----G---TTCT--TG-----------TGA--AAAA-TTTTCT-TGCACGTGAGTTAA-AGTTGGTTgt
gi|6 : cattatatatgacaaacatAAGAACATGTTCGTGAT----GAGAAAT-----TT-TGACGACATTA---AG-----AT--T-CTCAAGAACCATGT--GAAA-ATTTCT-CCCATGCAAA-AAA-ATTTGGTTTACAgcagta
gi|8 : ctgtaaaccatcttttacttgtgatgactttaccaatgataaacattaaacaggtttgtggtatctaattttcgcgactgagataatcggacacaaatataagagacagtaAGGACTGGTTTACAGT----GAGAAAT----AT-----AGACGATGACTAAGTTCTTC--TGGACC----TCACGT--AAA---TTTCT-CATACATGAATTAG-TGTTGGTTTATA
gi|15 : taatgtaagctactttttatttatgatttatcagtgataaagtggatcaaggcaattaatgtttgtgatcaagattatcttaaacaaatacgagaaacacAGAAAT----ATT-CA-CGACGATG--AGG---TTCTCGTGAACA---------C--GAAA-ATATCT-CACCCGTGAATATG-AGGTAGTTTAgt
gi|16 : CAAA----TCTTGC--AAAT-TTTTTTTCACTCGCAAATGAA-AGTTGGTTCACAagt
1 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|17 ): AACTAACTTTCGTTCATGACGACTTAATTTTGAGATATGATAAACTTGTTCATGGTGACTAA
Alignments
lowQualScore : 222222222 111 11111111111111111 55555555555555555555555555555555555 11111111
lowQualScore : 4 666 3 888888888 33 7777 555 5 3 0 111 7777 44 44 555 3 99 55 3 77777777777777777 3 555 77777777777777777777777777777777777 44 2 22222222 0 77777 6666 33 55 4 6 6 77 777 44 1 3
lowQualScore : . ... . ......... .. .... ... . . . ... .... .. .. ... . .. .. . ................. . ... ................................... .. . ........ . ..... .... .. .. . . . .. ... .. . .
lowQualScore : 0 444 6 666666666 66 1111 111 8 3 8 777 1111 66 66 888 3 22 11 3 22222222222222222 3 888 44444444444444444444444444444444444 66 5 11111111 7 99999 5555 88 99 8 9 4 66 555 22 9 1
consensus : TACTGTAAAC-CAACT---TT-TATTT-C-G--CGGC-TAC----TTT--ATTTCG-CGATTCACCTGTG---GTAA----AC--TGG--TTC---GCGGC-G--AG-TA-ATTTT--CGC--G---------A-TCG---AGCNTTTTTCAT---T---ATTT--------C--ANTCA--TTCAAG--------GACTGGTTCGCGAC----GAGAAAT----ATT-CGCGACGAT-GAGGTTCTCGCGAACCTCGCGAAA-TTTTCT-CGCA--CGCGAATGAA-AGTTGGTTTACA
Reference ( family-1039 ) : TACTGTAAAC-CAACT---TT-TATTT-C-G--CGGC-TAC----TTT--ATTTCG-CGATTCACCTGTG---GTAA----AC--TGG--TTC---GCGGC-G--AG-TA-ATTTT--CGC--G---------A-TCG---AGCNTTTTTCAT---T---ATTT--------C--ATTCA--TTCAAG--------GACTGGTTCGCGAC----GAGAAAT----ATT-CGCGACGAT-GAGGTTCTCGCAAATCTCGCGAAA-TTTTCT-CGCA--CGCGAATGAA-AGTTGGTTTACA
gi|1 : CT---TG-TATTCGC-A--CAG---AC----TTT--CTTGCG-CGATTTATCTGTC---ATAA----GG--TGG--TTC---GCAAC-G--AC-TA-ACTAT--TGC--G---------AATCAGATAGCCTTAAACAA---A---AATG--------A--A--CA--TCAAAG--------GACTAGTTTAAAGC----GATAACT----ATT-CGCGACAAT-GAAGTTCTCGCAAACTTTGCGAAA-
gi|10 : aatggtgcaagataatACTGTAAAT-CAACT---TT-TATT--C-G--CAGC-TAC----TTT----TTTG-CAATTCGC-TGTG---GTAACTAGAC--TGG--TTC---ATAAC-G--AG-TA-ATTTT--CGC--A---------A-TCG---ATCTTTTTTT-T---T---CTTT--------C--TTTTT--TT--------------TT--TTTATTA------AGAAAT----ATT-CACGAC-ATGGAGGTTCTCGCGAA-------AAA---TTCT-TGTA--CGCGAATAAG-ATTTGGTTTACAaattgatggtttacgtgaaacatactggtgcatatgattacagt
gi|11 : CA--CTAAAG--------GACTGGTTTGTGGC----TAAAA----------------------GGTTTTCATGAACCTTGGAAAA-ATTTCT-CGCA--TGTGAATGGA-TATTGGTTTACAgt
gi|12 : acacaacttttttacaattgctagtgatgaaatggttcccataactaaatgttcttgattaagataatctcaaacaaagatgagggaAAAA-TAACT---TT-CATT--C-A--TGAA-GAC----TTT--GTTTTG-TAAT--ACCAGTG---ATGA----AC--TGG--TTT---GTGGT-G--AC-TA-ATTCT--AAT--G---------A-CCA---AGgt
gi|13 : --TTCAAG--------GACTGCTTCATGAT----AAGAAGT----ATT-CGCAACAAT---GGTTCTTGTGAA-------AAA-TTTTCT-TGCA--CGTGAGTTAA-AGTTGGTTataatcatcaaaacaatatgagaggcactaaagcacttgtttgcaa
gi|14 : cattatatatgacaaacatCTGTAAAAACAACT---TT-TATGT-C-GGTTGGC-TAC----TTT--ATTTTG-CG-TTCACTTG-A---GTAA----AC--TGGGTTTC---CCGGC-GGAAG-TA-ATTTTTCTGCTGG---------A-TCA---AGgcagta
gi|15 : tcAGAAAT----ATT-CACGACGAT-GAGGTTCTCGTGAA---CACGAAA-ATATCT-CACC--CGTGAATATG-AGGTAGTTTA
gi|16 : GAT-GAGGTTCTCACAAATCTTGC-AAA-TTTTTT-TTCACTCGCAAATGAA-AGTTGGTTCACAagt
gi|2 : TACTGTAAAC-TAATT---TT-TATTT---G--TCGT-TAC----TTT--ATTTCG-TGATTTACCTATAATTGTAA----AC--TGG--TTT---GCAGT-G--GA-TA-ATTTT---GC--G---------A-TTG---AGCATTTGTCATA--T---AATTATGG----C--AGACA--GTCAAG--------GACTGGTTCACGAC----AAGCAAT----ATT-TGTGATGAT-GAGGTTCTCACAAATCTCGCAAAATTTTTCTCCCCA--CTCAAATGGA-AGTTGGTTTACAgt
gi|3 : ACTGTAAAC-TAATT---TT-T--TT-T-G--TCGT-T------TTT--ATTT-G--GATTTACCTATATTTGTAA----ACACTGG--TGCAGTGCAAC-GGAAG-TACATTTT--TGC------------A-TTG----GCATTCTTCATA--T---ATATGGCGGGACC--AGTC-----CAAG--------GACTGGTTCACGAC----AAGCAATCATCATTGTGCGATGAT-CGGGTTCTCAC-ATTCTCGC-ACA-TTTTCTCCCCA--CTC-AATGGA-AGTTGGTTgt
gi|4 : TGCTGTAAAC-CAACT---TT-TTTTT-CCG--CAGC-TAC----TTC--ATTTTG-CGATTCACCTGTG---GTTA----AC--TGG--TTT---GCAGC-G--AG-TA-ATTTT--TGC--A---------A-TTG---AGCCTTTTTCAT---TCCCATTT--------C--ATTCA--TTCAAG--------GACTGGTTTGCGAC----AAGAAAT----ATT-TGCGACAAT-GTAGCTATTGCACATCTTGCAAAA-TTTTCT-CACA--CGCAAATAGA-AGTTGGTTTACAa
gi|5 : CTGTAAAC-CAACT---TT-TAAT----------C-TAC----TTT--ATTTCG-CGATTCACGTGTG---GTAA----AC--TCG--TTC---GCGGC-G--AT-TA-ATTTT--CGC--G---------A-TCA---AGAACTTTTCATTTCT---ATTT--------C--ATTCA--TTCAAG--------GACTGGTTCGCGATAAAAAAAAAAT----ATT-CGCAACGGT-AAGGTTCTCGCGAATCTCGCAAAA-TTTTCT-CTAA--CGCGAACAAAGGGTTTGTTTACAtt
gi|6 : CTGTAAAC-CATCT---TT-TACTT---G--TGAT-GAC----TTT--AC--CAATGATAAACAT-------TAA----AC--AGG--TTT---GTGGT-A--TC-TA-ATTTT--CGC--GACTGAGATAA-TCG---GACA-----CAAA--T---ATAA--------G--AGACA--GTAAAG--------AACATGTTCGTGAT----GAGAAAT----TTT-GACGACATT-AAGATTCTCAAGAACCATGTGAAA-ATTTCT-CCCA--TGCAAA-AAA-ATTTGGTTTACAata
gi|7 : ACTGTAAAC-TAACT---GT--ATT--C-G--TGGC-TAC----TTT--ATTTCA-CGATCCACCTGAG---GTAA----AC--TGG--TTC---ATGGC-G--AG-TA-ATTTT--CAC--G---------A-TTG---AGTCTTTTTCAC---T---CCTA--------TGAATTTA--TTC------------ATTGGTTTACAAC----GAGAAAT----ATT-CTCGATGAT-GAGGTTCACGCGAATTTCGCAAAA-TATTTT-AACA--TGCAAATGAA-AGTTGGTTTA
gi|8 : GC-TAC----TTTTTATTT-A-TGATTTATCAGTG---ATAA----AG--TGG--ATC---AAGGC-A--AT-TA-ATGTT--TGT--G---------A-TCA---AG--------AT---T---ATCT--------T--AAACAAATACGAGAAACACAGGACTGGTTTACAGT----GAGAAAT----ATA-GACGATGAC-TAAGTTCTTCTGGACCTCACGTAA-ATTTCT-CATA--CATGAATTAG-TGTTGGTTTATAtg
gi|9 : taatgtaaTACTGTAAAC-CAACTAAATTATATTT---G--CAACGTACGTTCTCT--TTTTAA-CGATTTACCAATA---GTAA----GC--TGA--TTC---ATGACCA--AGATA-ATCTT-------A---------A-ACA---AA-----TGCGT---T---A-----------------CA--TCAAAG--------GACTGGTTCATGGC----GGAAAAT----ATA-TGCAATG---------------AACCTCGCGAAA-ATTTCT-TGCA--CACGAATTAA-AGGTGGCTTACAgt
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|17 ): AACTAACTTTCGTTCATGACGACTTAATTTTGAGATATGATAAACTTGTTCATGGTGACTAA
Alignments
lowQualScore : 222222222 111 111 66666666666666666666666666666666666666 11111111
lowQualScore : 4 666 3 888888888 33 7777 555 5 3 0 111 7777 44 44 555 3 99 55 3 111 44 3 555 00000000000000000000000000000000000000 666666 22222222 0 77777 6666 33 22 55 7 6 77 777 44 1 3
lowQualScore : . ... . ......... .. .... ... . . . ... .... .. .. ... . .. .. . ... .. . ... ...................................... ...... ........ . ..... .... .. .. .. . . .. ... .. . .
lowQualScore : 0 444 6 666666666 66 1111 111 8 3 8 777 1111 66 66 888 3 22 11 3 777 66 3 888 33333333333333333333333333333333333333 333333 11111111 7 99999 5555 88 44 99 6 4 66 555 22 9 1
consensus : TACTGTAAAC-CAACT---TT-TATTT-C-G--CGGC-TAC----TTT--ATTTCG-CGATTCACCTGTG---GTAA----AC--TGG--TTC---GCGGC-G--AG-TA-ATTTT--CGC--GA-TCG---AGCNTTTTT---CAT---T---ATTT--------C--ANNCA--TT-CAAG--------GACTGGTTCGCGAC----GAGAAAT----ATT-CGCGACGAT-GAGGTTCTCGCGAACCTCGCGAAA-TTTTCT-CGCAC--GCGAATGAA-AGTTGGTTTACA
Reference ( family-1039 ) : TACTGTAAAC-CAACT---TT-TATTT-C-G--CGGC-TAC----TTT--ATTTCG-CGATTCACCTGTG---GTAA----AC--TGG--TTC---GCGGC-G--AG-TA-ATTTT--CGC--GA-TCG---AGCNTTTTT---CAT---T---ATTT--------C--ANTCA--TT-CAAG--------GACTGGTTCGCGAC----GAGAAAT----ATT-CGCGACGAT-GAGGTTCTCGCGAACCTCGCGAAA-TTTTCT-CGCAC--GCGAATGAA-AGTTGGTTTACA
gi|1 : CT---TG-TATTCGC-A--CAG---AC----TTT--CTTGCG-CGATTTATCTGTC---ATAA----GG--TGG--TTC---GCAAC-G--AC-TA-ACTAT--TGC--GAATCAGATAGCCTTAAA---CAA---A---AATG--------A--A--CA--TC-AAAG--------GACTAGTTTAAAGC----GATAACT----ATT-CGCGACAAT-GAAGTTCTCGCAAACTTTGCGAAA-
gi|10 : aatggtgcaagataatACTGTAAAT-CAACT---TT-TATT--C-G--CAGC-TAC----TTT----TTTG-CAATTCGC-TGTG---GTAACTAGAC--TGG--TTC---ATAAC-G--AG-TA-ATTTT--CGC--AA-TCG---ATCTTTTTT---T-T---T---CTTT--------C--TTTTT--TT---------------TT--TTTATTA------AGAAAT----ATT-CACGAC-ATGGAGGTTCTCGCGAA-------AAA---TTCT-TGTAC--GCGAATAAG-ATTTGGTTTACAaattgatggtttacgtgaaacatactggtgcatatgattacagt
gi|11 : CA--CT-AAAG--------GACTGGTTTGTGGC----TAAAA----------------------GGTTTTCATGAACCTTGGAAAA-ATTTCT-CGCAT--GTGAATGGA-TATTGGTTTACAgt
gi|12 : acacaacttttttacaattgctagtgatgaaatggttcccataactaaatgttcttgattaagataatctcaaacaaagatgagggaAAAA-TAACT---TT-CATT--C-A--TGAA-GAC----TTT--GTTTTG-TAAT--ACCAGTG---ATGA----AC--TGG--TTT---GTGGT-G--AC-TA-ATTCT--AAT--GA-CCA---AGgt
gi|13 : ---CAT---T---ATATATGA----C--AAACA--TTTCAAG--------GACTGCTTCATGAT----AAGAAGT----ATT-CGCAACAAT---GGTTCTTGTGAA-------AAA-TTTTCT-TGCAC--GTGAGTTAA-AGTTGGTTataatcatcaaaacaatatgagaggcactaaagcacttgtttgcaa
gi|14 : CTGTAAAAACAACT---TT-TATGT-C-GGTTGGC-TAC----TTT--ATTTTG-CG-TTCACTTG-A---GTAA----AC--TGGGTTTC---CCGGC-GGAAG-TA-ATTTTTCTGCTGGA-TCA---AGgcagta
gi|15 : tcAGAAAT----ATT-CACGACGAT-GAGGTTCTCGTGAA---CACGAAA-ATATCT-CACCC--GTGAATATG-AGGTAGTTTA
gi|16 : GAT-GAGGTTCTCACAAATCTTGC-AAA-TTTTTT-TTCACTCGCAAATGAA-AGTTGGTTCACAagt
gi|2 : TACTGTAAAC-TAATT---TT-TATTT---G--TCGT-TAC----TTT--ATTTCG-TGATTTACCTATAATTGTAA----AC--TGG--TTT---GCAGT-G--GA-TA-ATTTT---GC--GA-TTG---AGCATTTGT---CATA--T---AATTATGG----C--AGACA--GT-CAAG--------GACTGGTTCACGAC----AAGCAAT----ATT-TGTGATGAT-GAGGTTCTCACAAATCTCGCAAAATTTTTCTCCCCAC--TCAAATGGA-AGTTGGTTTACAgt
gi|3 : ACTGTAAAC-TAATT---TT-T--TT-T-G--TCGT-T------TTT--ATTT-G--GATTTACCTATATTTGTAA----ACACTGG--TGCAGTGCAAC-GGAAG-TACATTTT--TGC---A-TTG----GCATTCTT---CATA--T---ATATGGCGGGACC--AGTC------CAAG--------GACTGGTTCACGAC----AAGCAATCATCATTGTGCGATGAT-CGGGTTCTCAC-ATTCTCGC-ACA-TTTTCTCCCCAC--TC-AATGGA-AGTTGGTTgt
gi|4 : TGCTGTAAAC-CAACT---TT-TTTTT-CCG--CAGC-TAC----TTC--ATTTTG-CGATTCACCTGTG---GTTA----AC--TGG--TTT---GCAGC-G--AG-TA-ATTTT--TGC--AA-TTG---AGCCTTTTT---CAT---TCCCATTT--------C--ATTCA--TT-CAAG--------GACTGGTTTGCGAC----AAGAAAT----ATT-TGCGACAAT-GTAGCTATTGCACATCTTGCAAAA-TTTTCT-CACAC--GCAAATAGA-AGTTGGTTTACAa
gi|5 : CTGTAAAC-CAACT---TT-TAAT----------C-TAC----TTT--ATTTCG-CGATTCACGTGTG---GTAA----AC--TCG--TTC---GCGGC-G--AT-TA-ATTTT--CGC--GA-TCA---AGAACTTTT---CATTTCT---ATTT--------C--ATTCA--TT-CAAG--------GACTGGTTCGCGATAAAAAAAAAAT----ATT-CGCAACGGT-AAGGTTCTCGCGAATCTCGCAAAA-TTTTCT-CTAAC--GCGAACAAAGGGTTTGTTTACAtt
gi|6 : CTGTAAAC-CATCT---TT-TACTT---G--TGAT-GAC----TTT--AC--CAATGATAAACAT-------TAA----AC--AGG--TTT---GTGGT-A--TC-TA-ATTTT--CGC--GA-CTG---AG-ATAATCGGACACAAAT---ATAA--------G--AGACA--GT-AAAG--------AACATGTTCGTGAT----GAGAAAT----TTT-GACGACATT-AAGATTCTCAAGAACCATGTGAAA-ATTTCT-CCCAT--GCAAA-AAA-ATTTGGTTTACAata
gi|7 : ACTGTAAAC-TAACT---GT--ATT--C-G--TGGC-TAC----TTT--ATTTCA-CGATCCACCTGAG---GTAA----AC--TGG--TTC---ATGGC-G--AG-TA-ATTTT--CAC--GA-TTG---AGTCTTTTT---CAC---T---CCTA--------TGAATTTA--TT-C------------ATTGGTTTACAAC----GAGAAAT----ATT-CTCGATGAT-GAGGTTCACGCGAATTTCGCAAAA-TATTTT-AACAT--GCAAATGAA-AGTTGGTTTA
gi|8 : GC-TAC----TTTTTATTT-A-TGATTTATCAGTG---ATAA----AG--TGG--ATC---AAGGC-A--AT-TA-ATGTT--TGT--GA-TCA---AG-----------AT---T---ATCT--------T--AAACAAATA-CGAGAAACACAGGACTGGTTTACAGT----GAGAAAT----ATA-GACGATGAC-TAAGTTCTTCTGGACCTCACGTAA-ATTTCT-CATAC--ATGAATTAG-TGTTGGTTTATAtg
gi|9 : taatgtaaTACTGTAAAC-CAACTAAATTATATTT---G--CAACGTACGTTCTCT--TTTTAA-CGATTTACCAATA---GTAA----GC--TGA--TTC---ATGACCA--AGATA-ATCTT-------AA-ACA---AA-----TG---CGT---T---A-----------------CA--TC-AAAG--------GACTGGTTCATGGC----GGAAAAT----ATA-TGCAA---------------TGAACCTCGCGAAA-ATTTCT-TGCAC--ACGAATTAA-AGGTGGCTTACAgt
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|17 ): AACTAACTTTCGTTCATGACGACTTAATTTTGAGATATGATAAACTTGTTCATGGTGACTAA
Alignments
lowQualScore : 222222222 111 111 5555555555555555555555555555555555 11111111
lowQualScore : 4 666 3 888888888 33 7777 555 5 3 0 111 7777 44 44 555 3 99 55 3 111 44 3 555 3333333333333333333333333333333333 888888 22222222 0 77777 6666 33 22 55 7 6 77 777 44 1 3
lowQualScore : . ... . ......... .. .... ... . . . ... .... .. .. ... . .. .. . ... .. . ... .................................. ...... ........ . ..... .... .. .. .. . . .. ... .. . .
lowQualScore : 0 444 6 666666666 66 1111 111 8 3 8 777 1111 66 66 888 3 22 11 3 777 66 3 888 5555555555555555555555555555555555 222222 11111111 7 99999 5555 88 44 99 6 4 66 555 22 9 1
consensus : TACTGTAAAC-CAACT---TT-TATTT-C-G--CGGC-TAC----TTT--ATTTCG-CGATTCACCTGTG---GTAA----AC--TGG--TTC---GCGGC-G--AG-TA-ATTTT--CGC--GA-TCG---AGCNTTTTT---CAT---T---ATTT----CANN--CA--TT-CAAG--------GACTGGTTCGCGAC----GAGAAAT----ATT-CGCGACGAT-GAGGTTCTCGCGAACCTCGCGAAA-TTTTCT-CGCAC--GCGAATGAA-AGTTGGTTTACA
Reference ( family-1039 ) : TACTGTAAAC-CAACT---TT-TATTT-C-G--CGGC-TAC----TTT--ATTTCG-CGATTCACCTGTG---GTAA----AC--TGG--TTC---GCGGC-G--AG-TA-ATTTT--CGC--GA-TCG---AGCNTTTTT---CAT---T---ATTT----CANN--CA--TT-CAAG--------GACTGGTTCGCGAC----GAGAAAT----ATT-CGCGACGAT-GAGGTTCTCGCGAACCTCGCGAAA-TTTTCT-CGCAC--GCGAATGAA-AGTTGGTTTACA
gi|1 : CT---TG-TATTCGC-A--CAG---AC----TTT--CTTGCG-CGATTTATCTGTC---ATAA----GG--TGG--TTC---GCAAC-G--AC-TA-ACTAT--TGC--GAATCAGATAGCCTTAAA---CAA---A---AAT------GAA--CA--TC-AAAG--------GACTAGTTTAAAGC----GATAACT----ATT-CGCGACAAT-GAAGTTCTCGCAAACTTTGCGAAA-
gi|10 : aatggtgcaagataatACTGTAAAT-CAACT---TT-TATT--C-G--CAGC-TAC----TTT----TTTG-CAATTCGC-TGTG---GTAACTAGAC--TGG--TTC---ATAAC-G--AG-TA-ATTTT--CGC--AA-TCG---ATCTTTTTT---T-T---T---CTTT----CTTT--TT--TT---------------TT--TTTATTA------AGAAAT----ATT-CACGAC-ATGGAGGTTCTCGCGAA-------AAA---TTCT-TGTAC--GCGAATAAG-ATTTGGTTTACAaattgatggtttacgtgaaacatactggtgcatatgattacagt
gi|11 : --CA--CT-AAAG--------GACTGGTTTGTGGC----TAAAA----------------------GGTTTTCATGAACCTTGGAAAA-ATTTCT-CGCAT--GTGAATGGA-TATTGGTTTACAgt
gi|12 : acacaacttttttacaattgctagtgatgaaatggttcccataactaaatgttcttgattaagataatctcaaacaaagatgagggaAAAA-TAACT---TT-CATT--C-A--TGAA-GAC----TTT--GTTTTG-TAAT--ACCAGTG---ATGA----AC--TGG--TTT---GTGGT-G--AC-TA-ATTCT--AAT--GA-CCA---AGgt
gi|13 : ---CAT---T---ATATATGACAAA--CA--TTTCAAG--------GACTGCTTCATGAT----AAGAAGT----ATT-CGCAACAAT---GGTTCTTGTGAA-------AAA-TTTTCT-TGCAC--GTGAGTTAA-AGTTGGTTataatcatcaaaacaatatgagaggcactaaagcacttgtttgcaa
gi|14 : CTGTAAAAACAACT---TT-TATGT-C-GGTTGGC-TAC----TTT--ATTTTG-CG-TTCACTTG-A---GTAA----AC--TGGGTTTC---CCGGC-GGAAG-TA-ATTTTTCTGCTGGA-TCA---AGgcagta
gi|15 : tcAGAAAT----ATT-CACGACGAT-GAGGTTCTCGTGAA---CACGAAA-ATATCT-CACCC--GTGAATATG-AGGTAGTTTA
gi|16 : GAT-GAGGTTCTCACAAATCTTGC-AAA-TTTTTT-TTCACTCGCAAATGAA-AGTTGGTTCACAagt
gi|2 : TACTGTAAAC-TAATT---TT-TATTT---G--TCGT-TAC----TTT--ATTTCG-TGATTTACCTATAATTGTAA----AC--TGG--TTT---GCAGT-G--GA-TA-ATTTT---GC--GA-TTG---AGCATTTGT---CATA--T---AATTATGGCAGA--CA--GT-CAAG--------GACTGGTTCACGAC----AAGCAAT----ATT-TGTGATGAT-GAGGTTCTCACAAATCTCGCAAAATTTTTCTCCCCAC--TCAAATGGA-AGTTGGTTTACAgt
gi|3 : ACTGTAAAC-TAATT---TT-T--TT-T-G--TCGT-T------TTT--ATTT-G--GATTTACCTATATTTGTAA----ACACTGG--TGCAGTGCAAC-GGAAG-TACATTTT--TGC---A-TTG----GCATTCTT---CATA--T---ATATGG--CGGGACCAG-TC-CAAG--------GACTGGTTCACGAC----AAGCAATCATCATTGTGCGATGAT-CGGGTTCTCAC-ATTCTCGC-ACA-TTTTCTCCCCAC--TC-AATGGA-AGTTGGTTgt
gi|4 : TGCTGTAAAC-CAACT---TT-TTTTT-CCG--CAGC-TAC----TTC--ATTTTG-CGATTCACCTGTG---GTTA----AC--TGG--TTT---GCAGC-G--AG-TA-ATTTT--TGC--AA-TTG---AGCCTTTTT---CAT---TCCCATTT----CATT--CA--TT-CAAG--------GACTGGTTTGCGAC----AAGAAAT----ATT-TGCGACAAT-GTAGCTATTGCACATCTTGCAAAA-TTTTCT-CACAC--GCAAATAGA-AGTTGGTTTACAa
gi|5 : CTGTAAAC-CAACT---TT-TAAT----------C-TAC----TTT--ATTTCG-CGATTCACGTGTG---GTAA----AC--TCG--TTC---GCGGC-G--AT-TA-ATTTT--CGC--GA-TCA---AGAACTTTT---CATTTCT---ATTT----CATT--CA--TT-CAAG--------GACTGGTTCGCGATAAAAAAAAAAT----ATT-CGCAACGGT-AAGGTTCTCGCGAATCTCGCAAAA-TTTTCT-CTAAC--GCGAACAAAGGGTTTGTTTACAtt
gi|6 : CTGTAAAC-CATCT---TT-TACTT---G--TGAT-GAC----TTT--AC--CAATGATAAACAT-------TAA----AC--AGG--TTT---GTGGT-A--TC-TA-ATTTT--CGC--GA-CTG---AG-ATAATCGGACACAAAT---ATAA----GAGA--CA--GT-AAAG--------AACATGTTCGTGAT----GAGAAAT----TTT-GACGACATT-AAGATTCTCAAGAACCATGTGAAA-ATTTCT-CCCAT--GCAAA-AAA-ATTTGGTTTACAata
gi|7 : ACTGTAAAC-TAACT---GT--ATT--C-G--TGGC-TAC----TTT--ATTTCA-CGATCCACCTGAG---GTAA----AC--TGG--TTC---ATGGC-G--AG-TA-ATTTT--CAC--GA-TTG---AGTCTTTTT---CAC---T---CCT------ATG--AA--TT-TATT--------CATTGGTTTACAAC----GAGAAAT----ATT-CTCGATGAT-GAGGTTCACGCGAATTTCGCAAAA-TATTTT-AACAT--GCAAATGAA-AGTTGGTTTA
gi|8 : GC-TAC----TTTTTATTT-A-TGATTTATCAGTG---ATAA----AG--TGG--ATC---AAGGC-A--AT-TA-ATGTT--TGT--GA-TCA---AG-----------AT---T---ATCT----TAAA--CAAATA-CGAGAAACACAGGACTGGTTTACAGT----GAGAAAT----ATA-GACGATGAC-TAAGTTCTTCTGGACCTCACGTAA-ATTTCT-CATAC--ATGAATTAG-TGTTGGTTTATAtg
gi|9 : taatgtaaTACTGTAAAC-CAACTAAATTATATTT---G--CAACGTACGTTCTCT--TTTTAA-CGATTTACCAATA---GTAA----GC--TGA--TTC---ATGACCA--AGATA-ATCTT-------AA-ACA---AA-----TG---CGT---T---A-------------CA--TC-AAAG--------GACTGGTTCATGGC----GGAAAAT----ATA-TGCAA---------------TGAACCTCGCGAAA-ATTTCT-TGCAC--ACGAATTAA-AGGTGGCTTACAgt
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|17 ): AACTAACTTTCGTTCATGACGACTTAATTTTGAGATATGATAAACTTGTTCATGGTGACTAA
Alignments
lowQualScore : 222222222 111 111 5555555555555555555555555555555555 11111111
lowQualScore : 4 666 3 888888888 33 7777 555 5 3 0 111 7777 44 44 555 3 99 55 3 111 44 3 555 3333333333333333333333333333333333 888888 22222222 0 77777 6666 33 22 55 7 6 77 777 44 1 3
lowQualScore : . ... . ......... .. .... ... . . . ... .... .. .. ... . .. .. . ... .. . ... .................................. ...... ........ . ..... .... .. .. .. . . .. ... .. . .
lowQualScore : 0 444 6 666666666 66 1111 111 8 3 8 777 1111 66 66 888 3 22 11 3 777 66 3 888 5555555555555555555555555555555555 222222 11111111 7 99999 5555 88 44 99 6 4 66 555 22 9 1
consensus : TACTGTAAAC-CAACT---TT-TATTT-C-G--CGGC-TAC----TTT--ATTTCG-CGATTCACCTGTG---GTAA----AC--TGG--TTC---GCGGC-G--AG-TA-ATTTT--CGC--GA-TCG---AGCNTTTTT---CAT---T---ATTT----CANN--CA--TT-CAAG--------GACTGGTTCGCGAC----GAGAAAT----ATT-CGCGACGAT-GAGGTTCTCGCGAACCTCGCGAAA-TTTTCT-CGCAC--GCGAATGAA-AGTTGGTTTACA
Reference ( family-1039 ) : TACTGTAAAC-CAACT---TT-TATTT-C-G--CGGC-TAC----TTT--ATTTCG-CGATTCACCTGTG---GTAA----AC--TGG--TTC---GCGGC-G--AG-TA-ATTTT--CGC--GA-TCG---AGCNTTTTT---CAT---T---ATTT----CANN--CA--TT-CAAG--------GACTGGTTCGCGAC----GAGAAAT----ATT-CGCGACGAT-GAGGTTCTCGCGAACCTCGCGAAA-TTTTCT-CGCAC--GCGAATGAA-AGTTGGTTTACA
gi|1 : CT---TG-TATTCGC-A--CAG---AC----TTT--CTTGCG-CGATTTATCTGTC---ATAA----GG--TGG--TTC---GCAAC-G--AC-TA-ACTAT--TGC--GAATCAGATAGCCTTAAA---CAA---A---AAT------GAA--CA--TC-AAAG--------GACTAGTTTAAAGC----GATAACT----ATT-CGCGACAAT-GAAGTTCTCGCAAACTTTGCGAAA-
gi|10 : aatggtgcaagataatACTGTAAAT-CAACT---TT-TATT--C-G--CAGC-TAC----TTT----TTTG-CAATTCGC-TGTG---GTAACTAGAC--TGG--TTC---ATAAC-G--AG-TA-ATTTT--CGC--AA-TCG---ATCTTTTTT---T-T---T---CTTT----CTTT--TT--TT---------------TT--TTTATTA------AGAAAT----ATT-CACGAC-ATGGAGGTTCTCGCGAA-------AAA---TTCT-TGTAC--GCGAATAAG-ATTTGGTTTACAaattgatggtttacgtgaaacatactggtgcatatgattacagt
gi|11 : --CA--CT-AAAG--------GACTGGTTTGTGGC----TAAAA----------------------GGTTTTCATGAACCTTGGAAAA-ATTTCT-CGCAT--GTGAATGGA-TATTGGTTTACAgt
gi|12 : acacaacttttttacaattgctagtgatgaaatggttcccataactaaatgttcttgattaagataatctcaaacaaagatgagggaAAAA-TAACT---TT-CATT--C-A--TGAA-GAC----TTT--GTTTTG-TAAT--ACCAGTG---ATGA----AC--TGG--TTT---GTGGT-G--AC-TA-ATTCT--AAT--GA-CCA---AGgt
gi|13 : ---CAT---T---ATATATGACAAA--CA--TTTCAAG--------GACTGCTTCATGAT----AAGAAGT----ATT-CGCAACAAT---GGTTCTTGTGAA-------AAA-TTTTCT-TGCAC--GTGAGTTAA-AGTTGGTTataatcatcaaaacaatatgagaggcactaaagcacttgtttgcaa
gi|14 : CTGTAAAAACAACT---TT-TATGT-C-GGTTGGC-TAC----TTT--ATTTTG-CG-TTCACTTG-A---GTAA----AC--TGGGTTTC---CCGGC-GGAAG-TA-ATTTTTCTGCTGGA-TCA---AGgcagta
gi|15 : tcAGAAAT----ATT-CACGACGAT-GAGGTTCTCGTGAA---CACGAAA-ATATCT-CACCC--GTGAATATG-AGGTAGTTTA
gi|16 : GAT-GAGGTTCTCACAAATCTTGC-AAA-TTTTTT-TTCACTCGCAAATGAA-AGTTGGTTCACAagt
gi|2 : TACTGTAAAC-TAATT---TT-TATTT---G--TCGT-TAC----TTT--ATTTCG-TGATTTACCTATAATTGTAA----AC--TGG--TTT---GCAGT-G--GA-TA-ATTTT---GC--GA-TTG---AGCATTTGT---CATA--T---AATTATGGCAGA--CA--GT-CAAG--------GACTGGTTCACGAC----AAGCAAT----ATT-TGTGATGAT-GAGGTTCTCACAAATCTCGCAAAATTTTTCTCCCCAC--TCAAATGGA-AGTTGGTTTACAgt
gi|3 : ACTGTAAAC-TAATT---TT-T--TT-T-G--TCGT-T------TTT--ATTT-G--GATTTACCTATATTTGTAA----ACACTGG--TGCAGTGCAAC-GGAAG-TACATTTT--TGC---A-TTG----GCATTCTT---CATA--T---ATATGG--CGGGACCAG-TC-CAAG--------GACTGGTTCACGAC----AAGCAATCATCATTGTGCGATGAT-CGGGTTCTCAC-ATTCTCGC-ACA-TTTTCTCCCCAC--TC-AATGGA-AGTTGGTTgt
gi|4 : TGCTGTAAAC-CAACT---TT-TTTTT-CCG--CAGC-TAC----TTC--ATTTTG-CGATTCACCTGTG---GTTA----AC--TGG--TTT---GCAGC-G--AG-TA-ATTTT--TGC--AA-TTG---AGCCTTTTT---CAT---TCCCATTT----CATT--CA--TT-CAAG--------GACTGGTTTGCGAC----AAGAAAT----ATT-TGCGACAAT-GTAGCTATTGCACATCTTGCAAAA-TTTTCT-CACAC--GCAAATAGA-AGTTGGTTTACAa
gi|5 : CTGTAAAC-CAACT---TT-TAAT----------C-TAC----TTT--ATTTCG-CGATTCACGTGTG---GTAA----AC--TCG--TTC---GCGGC-G--AT-TA-ATTTT--CGC--GA-TCA---AGAACTTTT---CATTTCT---ATTT----CATT--CA--TT-CAAG--------GACTGGTTCGCGATAAAAAAAAAAT----ATT-CGCAACGGT-AAGGTTCTCGCGAATCTCGCAAAA-TTTTCT-CTAAC--GCGAACAAAGGGTTTGTTTACAtt
gi|6 : CTGTAAAC-CATCT---TT-TACTT---G--TGAT-GAC----TTT--AC--CAATGATAAACAT-------TAA----AC--AGG--TTT---GTGGT-A--TC-TA-ATTTT--CGC--GA-CTG---AG-ATAATCGGACACAAAT---ATAA----GAGA--CA--GT-AAAG--------AACATGTTCGTGAT----GAGAAAT----TTT-GACGACATT-AAGATTCTCAAGAACCATGTGAAA-ATTTCT-CCCAT--GCAAA-AAA-ATTTGGTTTACAata
gi|7 : ACTGTAAAC-TAACT---GT--ATT--C-G--TGGC-TAC----TTT--ATTTCA-CGATCCACCTGAG---GTAA----AC--TGG--TTC---ATGGC-G--AG-TA-ATTTT--CAC--GA-TTG---AGTCTTTTT---CAC---T---CCT------ATG--AA--TT-TATT--------CATTGGTTTACAAC----GAGAAAT----ATT-CTCGATGAT-GAGGTTCACGCGAATTTCGCAAAA-TATTTT-AACAT--GCAAATGAA-AGTTGGTTTA
gi|8 : GC-TAC----TTTTTATTT-A-TGATTTATCAGTG---ATAA----AG--TGG--ATC---AAGGC-A--AT-TA-ATGTT--TGT--GA-TCA---AG-----------AT---T---ATCT----TAAA--CAAATA-CGAGAAACACAGGACTGGTTTACAGT----GAGAAAT----ATA-GACGATGAC-TAAGTTCTTCTGGACCTCACGTAA-ATTTCT-CATAC--ATGAATTAG-TGTTGGTTTATAtg
gi|9 : taatgtaaTACTGTAAAC-CAACTAAATTATATTT---G--CAACGTACGTTCTCT--TTTTAA-CGATTTACCAATA---GTAA----GC--TGA--TTC---ATGACCA--AGATA-ATCTT-------AA-ACA---AA-----TG---CGT---T---A-------------CA--TC-AAAG--------GACTGGTTCATGGC----GGAAAAT----ATA-TGCAA---------------TGAACCTCGCGAAA-ATTTCT-TGCAC--ACGAATTAA-AGGTGGCTTACAgt
blockSeqs : A AAA A TCGGTTG CG GTTC TTA T A ATT CTAG AC GT AGT C GA GA C TCT TG . . CATTTGTCATATAATTATGGCAGA AATAC AAACACAG AAAAA CATC GT CA GG C A TT CCC TC G G
blockSeqs : . . . TCCGCA C . G T . TTT . . . . . GA G . C . . . CATTCTTCATATATATGGCGGGAC TTTC . T . C CG G T G A CCC . T .
blockSeqs : . . . TTGTC A . A T . . . . . . . . C . A . . . ATAATCGGACACAAATATAAGAGA GTCC . A . C TG G T A T CG . A .
blockSeqs : . . . CGCA C . A C . . . . . . . . G . T . . . CCTTTTTCATTCCCATTTCATT CTA . A . C TG G T A A TG . G .
blockSeqs : . . . CATG T . A T . . . . . . . . A . T . . . AACTTTTCATTTCTATTTCATT GTC . A . T CA C T A T CA . G .
blockSeqs : . . . TGTC T . A C . . . . . . . . G . C . . . CTTTTTTTTTCTTTCTTT TTC . A . T CG G T G T TT . G .
blockSeqs : . . . TGTG C . A C . . . . . . . . G . C . . . TCTTTTTCACTCCTATG TTC . G . C CA A C A T CA . A .
blockSeqs : . . . CGTG C . A C . . . . . . . . T . C . . . ATTATCTTAAA GTA . G . G TG A T G T CT . A .
blockSeqs : . . . TGCA T . A A . . . . . . . . C . T . . . TGCGTTA TTT . G . C TG G C G A CC . A .
blockSeqs : . . . C . T . . . . . . . . . G . . . . . TCA . G . G C T C . T AA . G .
blockSeqs : C . . . . . . . . . . . T . . . . . TT . . . T . . . . A CA . T .
blockSeqs : . . . . . . A TG . T .
blockSeqs : . . .
blockSeqCons : CGCG***** C* *** CTTTTTCATTCCATTTCATN************** N*
originalCons : TACTGTAAAC-CAACT---TT-TATTT-C-G--CGGC-TAC----TTT--ATTTCG-CGATTCACCTGTG---GTAA----AC--TGG--TTC---GCGGC-G--AG-TA-ATTTT--CGC--GA-TCG---AGCNTTTTT---CAT---T---ATTT----CANN--CA--TT-CAAG--------GACTGGTTCGCGAC----GAGAAAT----ATT-CGCGACGAT-GAGGTTCTCGCGAACCTCGCGAAA-TTTTCT-CGCAC--GCGAATGAA-AGTTGGTTTACA
finalCons : TACTGTAAAC-CAACT---TT-TATTCGCG-----GC-TAC----TTT--ATTTCG-CGATTCACCTGTG---GTAA----AC--TGG--TTC---GCGGC-G--AG-TA-ATTTT--CGC--GA-TCG---AGCTTTTTCATTCCATTTCATN--------------CA--TT-CAAG--------GACTGGTTCGCGAC----GAGAAAT----ATT-CGCGACGAT-GAGGTTCTCGCGAACCTCGCGAAAN-TTTCT-CGCAC--GCGAATGAA-AGTTGGTTTACA
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|17 ): AACTAACTTTCGTTCATGACGACTTAATTTTGAGATATGATAAACTTGTTCATGGTGACTAA
Alignments
lowQualScore : 1111111 111 111 7777777777777777777777777777777777777777777777
lowQualScore : 4 666 3 3 55 0000000 7777 555 5 3 0 111 7777 44 44 555 3 99 55 3 111 44 3 777777 5555555555555555555555555555555555555555555555 222 3 0 77777 6666 33 22 55 7 6 66 777 44 1 3
lowQualScore : . ... . . .. ....... .... ... . . . ... .... .. .. ... . .. .. . ... .. . ...... .............................................. ... . . ..... .... .. .. .. . . .. ... .. . .
lowQualScore : 0 444 6 6 00 4444444 1111 111 8 3 8 777 1111 66 66 888 3 22 11 3 777 66 3 111111 6666666666666666666666666666666666666666666666 777 3 7 99999 5555 88 44 99 6 4 99 555 22 9 1
consensus : TACTGTAAAC-CAACT---TT-TAT-T--CG--CGGC-TAC----TTT--ATTTCG-CGATTCACCTGTG---GTAA----AC--TGG--TTC---GCGGC-G--AG-TA-ATTTT--CGC--GA-TC--G---AG-C-TT-TTTCA-T-TC-----C-ATT-T--C---ATN-----C---ATTCA-AGGACTGGTTCGCGAC----GAGAAAT----ATT-CGCGACGAT-GAGGTTCTCGCGAACCTCGCGAAA-TTTTCT-CGCAC--GCGAATGAA-AGTTGGTTTACA
Reference ( family-1039 ) : TACTGTAAAC-CAACT---TT-TAT-T--CG--CGGC-TAC----TTT--ATTTCG-CGATTCACCTGTG---GTAA----AC--TGG--TTC---GCGGC-G--AG-TA-ATTTT--CGC--GA-TC--G---AG-C-TT-TTTCA-T-TC-----C-ATT-T--C---ATN-----C---ATTCA-AGGACTGGTTCGCGAC----GAGAAAT----ATT-CGCGACGAT-GAGGTTCTCGCGAACCTCGCGAAA-NTTTCT-CGCAC--GCGAATGAA-AGTTGGTTTACA
gi|1 : CT---TG-TAT-T--CG--CACA-GAC----TTT--CTTGCG-CGATTTATCTGTC---ATAA----GG--TGG--TTC---GCAAC-G--AC-TA-ACTAT--TGC--GAATC--AGATAG-C-CT-T---A-A-AC-----A-AA-----A---ATGAA---C---ATCAA-AGGACTAGTTTAAAGC----GATAACT----ATT-CGCGACAAT-GAAGTTCTCGCAAACTTTGCGAAA-
gi|10 : aatggtgcaagataatACTGTAAAT-CAACT---TT-TAT-T--CG--CAGC-TAC----TTT----TTTG-CAATTCGC-TGTG---GTAACTAGAC--TGG--TTC---ATAAC-G--AG-TA-ATTTT--CGC--AA-TC--G---AT-C-TT-TTTTT-T-TC--------TT-T--C---TTT-----T---TTT-------TT--TTTATTA------AGAAAT----ATT-CACGAC-ATGGAGGTTCTCGCGAA-------AAA---TTCT-TGTAC--GCGAATAAG-ATTTGGTTTACAaattgatggtttacgtgaaacatactggtgcatatgattacagt
gi|11 : -----C---ACTAA-AGGACTGGTTTGTGGC----TAAAA----------------------GGTTTTCATGAACCTTGGAAAA-ATTTCT-CGCAT--GTGAATGGA-TATTGGTTTACAgt
gi|12 : acacaacttttttacaattgctagtgatgaaatggttcccataactaaatgttcttgattaagataatctcaaacaaagatgagggaAAAA-TAACT---TT-CAT-T--CA--TGAA-GAC----TTT--GTTTTG-TAAT--ACCAGTG---ATGA----AC--TGG--TTT---GTGGT-G--AC-TA-ATTCT--AAT--GA-CC--A---AG-gt
gi|13 : TTCA-AGGACTGCTTCATGAT----AAGAAGT----ATT-CGCAACAAT---GGTTCTTGTGAA-------AAA-TTTTCT-TGCAC--GTGAGTTAA-AGTTGGTTataatcatcaaaacaatatgagaggcactaaagcacttgtttgcaa
gi|14 : cattatatatgacaaacatCTGTAAAAACAACT---TT-TATGT--CGGTTGGC-TAC----TTT--ATTTTG-CG-TTCACTTG-A---GTAA----AC--TGGGTTTC---CCGGC-GGAAG-TA-ATTTTTCTGCTGGA-TC--A---AG-gcagta
gi|15 : tcAGAAAT----ATT-CACGACGAT-GAGGTTCTCGTGAA---CACGAAA-ATATCT-CACCC--GTGAATATG-AGGTAGTTTA
gi|16 : GAT-GAGGTTCTCACAAATCTTGC-AAA-TTTTTT-TTCACTCGCAAATGAA-AGTTGGTTCACAagt
gi|2 : TACTGTAAAC-TAATT---TT-TAT-T--TG--TCGT-TAC----TTT--ATTTCG-TGATTTACCTATAATTGTAA----AC--TGG--TTT---GCAGT-G--GA-TA-ATTTT---GC--GA-TT--G---AG-CATT-TGTCA-T-AT-----A-ATTATGGC---AGA-----C---AGTCA-AGGACTGGTTCACGAC----AAGCAAT----ATT-TGTGATGAT-GAGGTTCTCACAAATCTCGCAAAATTTTTCTCCCCAC--TCAAATGGA-AGTTGGTTTACAgt
gi|3 : ACTGTAAAC-TAATT---TT-T-T-T--TG--TCGT-T------TTT--ATTT-G--GATTTACCTATATTTGTAA----ACACTGG--TGCAGTGCAAC-GGAAG-TACATTTT--TGC---A-TT--G----G-CATT-CTTCA-TATA-----T-ATG-G--CGGGACC-----A---GTCCA-AGGACTGGTTCACGAC----AAGCAATCATCATTGTGCGATGAT-CGGGTTCTCAC-ATTCTCGC-ACA-TTTTCTCCCCAC--TC-AATGGA-AGTTGGTTgt
gi|4 : TGCTGTAAAC-CAACT---TT-TTT-TTCCG--CAGC-TAC----TTC--ATTTTG-CGATTCACCTGTG---GTTA----AC--TGG--TTT---GCAGC-G--AG-TA-ATTTT--TGC--AA-TT--G---AG-CCTT-TTTCA-T-TC-----CCATT-T--C---ATT-----C---ATTCA-AGGACTGGTTTGCGAC----AAGAAAT----ATT-TGCGACAAT-GTAGCTATTGCACATCTTGCAAAA-TTTTCT-CACAC--GCAAATAGA-AGTTGGTTTACAa
gi|5 : CTGTAAAC-CAACT---TT-TAA-T--C--------TAC----TTT--ATTTCG-CGATTCACGTGTG---GTAA----AC--TCG--TTC---GCGGC-G--AT-TA-ATTTT--CGC--GA-TCAAG---AA-C--T-TTTCATT-TC-----T-ATT-T--C---ATT-----C---ATTCA-AGGACTGGTTCGCGATAAAAAAAAAAT----ATT-CGCAACGGT-AAGGTTCTCGCGAATCTCGCAAAA-TTTTCT-CTAAC--GCGAACAAAGGGTTTGTTTACAtt
gi|6 : CTGTAAAC-CATCT---TT-TAC-T--TG--TGAT-GAC----TTT--AC--CAATGATAAACAT-------TAA----AC--AGG--TTT---GTGGT-A--TC-TA-ATTTT--CGC--GA-CT--G---AG-A-T------A-A-TCGGACAC-AAA-T------ATAAGAGAC---AGTAA-AGAACATGTTCGTGAT----GAGAAAT----TTT-GACGACATT-AAGATTCTCAAGAACCATGTGAAA-ATTTCT-CCCAT--GCAAA-AAA-ATTTGGTTTACAata
gi|7 : ACTGTAAAC-TAACT---GT--AT-T--CG--TGGC-TAC----TTT--ATTTCA-CGATCCACCTGAG---GTAA----AC--TGG--TTC---ATGGC-G--AG-TA-ATTTT--CAC--GA-TT--G---AGTC-TT-TTTCA-C-TC-----C-TAT-G--A---ATT-----T---ATTC-----ATTGGTTTACAAC----GAGAAAT----ATT-CTCGATGAT-GAGGTTCACGCGAATTTCGCAAAA-TATTTT-AACAT--GCAAATGAA-AGTTGGTTTA
gi|8 : GC-TAC----TTTTTATTT-A-TGATTTATCAGTG---ATAA----AG--TGG--ATC---AAGGC-A--AT-TA-ATGTT--TGT--GA-TC--A---AG-A-TTATCTTA-A-AC-----A-A----------ATA-----CGAGAAACACAGGACTGGTTTACAGT----GAGAAAT----ATA-GACGATGAC-TAAGTTCTTCTGGACCTCACGTAA-ATTTCT-CATAC--ATGAATTAG-TGTTGGTTTATAtg
gi|9 : taatgtaaTACTGTAAAC-CAACTAAATTATAT-T--TG--CAACGTACGTTCTCT--TTTTAA-CGATTTACCAATA---GTAA----GC--TGA--TTC---ATGACCA--AGATA-ATCTT-------AA-AC--A---AA-------TGCG-T-TA-----C-AT-----------------C---A---A-AGGACTGGTTCATGGC----GGAAAAT----ATA-TGCAA---------------TGAACCTCGCGAAA-ATTTCT-TGCAC--ACGAATTAA-AGGTGGCTTACAgt
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|17 ): AACTAACTTTCGTTCATGACGACTTAATTTTGAGATATGATAAACTTGTTCATGGTGACTAA