lowQualScore : 1 1111111111 33 1 1111111 22 4444444444444444 11 22222222222222222 6666666666 222222222222 11111
lowQualScore : 4 4 4 444 4 8 4 7 9999999999 4 3 11 1 3 55 3 555 66666 0 7777 0000000 3 555 777 4 88 3 0 88 8888888888888888 777 22 4 55 77777777777777777 5 5 888 5 0 55 66 66 5 0 888 5 5 99 9999999999 777777777777 3 33333
lowQualScore : . . . ... . . . . .......... . . .. . . .. . ... ..... . .... ....... . ... ... . .. . . .. ................ ... .. . .. ................. . . ... . . .. .. .. . . ... . . .. .......... ............ . .....
lowQualScore : 4 4 4 888 4 9 4 8 4444444444 0 6 88 4 3 55 3 888 99999 0 1111 8888888 3 888 444 0 00 0 7 77 0000000000000000 000 66 0 55 44444444444444444 0 0 888 0 2 11 99 99 0 1 888 0 7 22 3333333333 555555555555 5 33333
consensus : AATTC-CG-T-ATC-ANCACTCT-CTG-A-AACTGAT----------GAC-GTCA-CAAT-GCAT-CAAC-G-C---A---A-CA-TTTTT----GTG-------G-AGA---AT-G-T-C-GACTGCGTC-ATAAACAA-ACAAA---NC----GCGTA---CA-AACAAATA-A--TTTC----ACNG--T---AT-G-TTTGT-GTA---TT-TTGA-TATAT--TT--G-GAA---CA-CAT-TTATCTT--ATAAACG-----TCGATTT-AA---------TAAGAT-A---GGTAAGGGGGT
Reference ( gi|4 ) : AATTC-CG-T-ATC-AGTATTCT-CTG-A-A-CTGAT----------GAC-GTCA-CAA--GTAT-CAAC-G-C---A---A-CA-TTTTT----GTG-------G-AGA---AT-G-T-CGGATTGCATC-ATAAACAA-ACAAA---GC----GCGTG---CA-AACAAATA-A--TTTC----ACCG--T---AT-G-TTTGT-GTA---TT-TTGA-TATAT--TT--G-GAA---CA-CAT-TTATCTT--ATAAAT------T--ATTT-AA---------TAAGAT-A---GGTAAGGGGGT
gi|3 : AATTC-CG-T-ATC-AGTATTCT-CTG-A-A-CTGAT----------GAC-GTCA-CAA--GTAT-CAAC-G-C---A---A-CA-TTTTT----GTG-------G-AGA---AT-G-T-CGGATTGCATC-ATAAACAA-ACAAA---GC----GCGTG---CA-AACAAATA-A--TTTC----ACCG--T---AT-G-TTTGT-GTA---TT-TTGA-TATAT--TT--G-GAA---CA-CAT-TTATCTT--ATAAAT------T--ATTT-AA---------T-AGAT-AGAGGGTAAGGGGG
gi|6 : AATTCGCGGT-ATCCAGTAT-CT-CTA-A-A-CTGATCATGAATGACGAC-GTCA-AAA--TGATGCAAT-G-C---A---GGCA-TTTTT----GTG-------A-AGACCCAT-G-T-CA-ACTGCATC--TAAACAATACTGA---TT----GTCCA---CACAACAAATA-A--TTTC----ACGGT-T---ATAG-TTTGT-GTA---TTATTCACTATAT--CA--G-ACA---CA-C
gi|14 : cATTC-CG-T-ATC-AGTATTCT-CTG-A-AACTGAT----------GAC-GTCA-CAAT-GCAA-CAAC-G-C---A---A-CA-TTTTT----GTG-------G-AGA---AT-
gi|1 : cgTC-CG-T-ATC-AGTATTTTTCTG-A-AACTGAT----------GAC-GT-A-CAAATGTAT-CAA--A-T---A---A-CA-TTTT-----ATG-------G-GGA---AT-T-C-TCGACTGTGTC-ATAAACA----AAA---CT----GCGTG---TA-CAC-AACA-A--TTTC----A-CGAAT---ATAG-TTTGT-GTA----T-TTAA-TATATTCTT--G-GAAGACCA-CAT-TTATTTG--ATAAACG-----TCAATTT-CA---------TAAGATGA---GGTAAGGG
gi|5 : aTC-CG-T-ATC-ACCACTCG-CTG-A-AACTGAT----------GAC-ATCA-CAAT-GTAT-CAAC-A-C---A---A-CA-TTTTT----GTG-------G-GGA---AT-A-T-C-AACTGTGTC-------------------T----GCGTA---TA-AAAAAA-A-A--ATCC----AGTG--A---CT-C-TTTGT-GT----TA-TTGA-TATAT--TT--T-GAA---TA-CAT-TTTTCCTAAATACATG-----G--ATTT-A-----------AAAAT-A---CATTAGGAGGTaaaaaggtat
gi|9 : ctgaaTC-TG-T-ATC-ATCACTCT-CTG-A-AACTGAT----------GAT-GACA-CAAT-GCAT-CAAT-G-C---A---A-CATTTTTT----GTG-------G-AAA---AC-A-T-C-TACTGCGTC-AGAAACA----AAA---CT----GTGTA---CA-CAAAAATA-A--TCTac
gi|13 : tgaaTC-CG-TCATC-ACCACTCT-CTGAA-A-CTGAT----------GACAATTG-CAAT-GCAT-CGGT-G-C---A---A-TG-TTTTT----TTG-------A-AGA---GT-A-T-gtagtcatggtttgttataaataaatttgaataa
gi|15 : taaTC-TG-C-ATC-ACCACTCT-CTGAA-A-CTGAT--------------GTTG-CAAT-GCAA-TAAT-A-A---A---T-CATTTTTT----GCG-------G-AGA---A
gi|8 : tgaa-CG-T-ATC---CACTCT-CTG-AGA-CTGAT----------TAT--TCAACAGCTGCAT-CA-T-A-C---A---A----TTTTT----GTT-------GCAGA---AT-T-T-C--ACC-CGTCTATAAAT----TAAA---ACTTCCGTGTA---CACAACAAATATAGCTTTC----GAGT--T---AT-G-TTCGT--TA---TT-TTGA--ATAT--TTTGG-AAA---CA-CAT-TTGT
gi|7 : gat-GCCA-CAAT-GCAT-CAAC-GGC---A---AACAGTTTTT----GTG-------G-AGA---AT-G-T-C-GACTG-AT--GTCAATAA-ACAAATCTAC----GTGTA---CACAACAAATA-A--TTTC----ACGG--T---A--G-TTTGT-ATA---TT-CGAA-GATTT--TA--G-AAA---CA-CAT-TTATCTT--ATAAACG-----TCGATTTAAA---------TTAGAT-A---GGTGAGGGG
gi|10 : tCA-CAT--GTAT-TAATTG-C---ATCCA-TA-TTTTT----GTG-------A-AAA---GT-GAT-C-AACCAAGTC-AAAGACAA-A-ACT---GC----ATGTA---CA-AA-AAATA-A--TTTC----Aa
gi|2 : tatctaacactcagatca-CAAC-G-TGCTA---A-CG-TTTTTTATAGTGATGCACTG-AGA---ATTG-TTCGCAT-GCGTC-CTAAATA---CAATCT-GC----CCGTGTACCA-CACAACTA-A--TTTCCAATATTG--TGTTAT-GATTTGTTGTAATCTT-TTGA-TAGAA--TT--GAGAA---TAACTTATTATCTT--ATAAACGCCCGAT--ATTT-AAGCTCTCTCATAGGAT-A---GGTAGAAGGGTaagtcggcttatta
gi|16 : GACTGCATC-ATAAACA----AAA---CT----GCGTG---TA-CACAAatata
gi|12 : cA-A--TTTC----AT-G--T---AT-G-TTTAT-GTA---TT-TTTA-TATAT--CT--G-G-A---CA-CAT-TTATCTT--ATAAACG-----TCGATTC-AA---------TAAG-------GGTAcgca
1 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|11 ): GTTGANNNNNNNNNNNNNNNNNNNNNNNNNTACACTGATTCCTGTTACATAAGAATTCTAACAATGATTTTTATCATCGGCACATACATTTA
Alignments
lowQualScore : 1111111111 1111111 222222222222222 111 11111111 2222222 22222222222 11111
lowQualScore : 4 4 4 4 2 1 3 5555555555 3 3 3 3 3 0 3 44 3 555 99999 9 6666 3 0000000 555 999 3 88 3 777 55 999999999999999 55 222 3 55 7777 33 7 55555555 4 55 777 4 0 4 77777 4 777 4 5 0000000 33333333333 1 00000
lowQualScore : . . . . . . . .......... . . . . . . . .. . ... ..... . .... . ....... ... ... . .. . ... .. ............... .. ... . .. .... .. . ........ . .. ... . . . ..... . ... . . ....... ........... . .....
lowQualScore : 0 0 0 0 4 4 6 9999999999 3 3 3 3 3 8 1 33 1 444 55555 2 5555 1 0000000 444 555 3 55 6 999 00 999999999999999 00 111 6 00 7777 00 3 99999999 0 66 000 0 9 0 22222 0 888 4 0 6666666 00000000000 7 11111
consensus : AATTC-CG-T-ATC-AGCACTCT-CTGAAACTGAT----------GAC-GT-C-ACA-A-TGCAT-CAAC-G-C---A---A-CA-TTTTT----G-TG-------GAGA---AT-G-T-C-GACTG-CGTC-ATAAA--CAA-ACAAA---CC---GC--GTACA-A-ACAAATA-A--TTTC----ACGG-T---A--T-G-TTTGT-GTA---TT-TTGA-TATATT--T--G-GAA---CA-CAT-TTATCTTATAAACG-TCG--ATTT-A---------ATAAGAT-A---GGTAAGGGGGT
Reference ( family-428 ) : AATTC-CG-T-ATC-ANCACTCT-CTGAAACTGAT----------GAC-GT-C-ACA-A-TGCAT-CAAC-G-C---A---A-CA-TTTTT----G-TG-------GAGA---AT-G-T-C-GACTG-CGTC-ATAAA--CAA-ACAAA---NC---GC--GTACA-A-ACAAATA-A--TTTC----ACNG-T---A--T-G-TTTGT-GTA---TT-TTGA-TATATT--T--G-GAA---CA-CAT-TTATCTTATAAACG-TCG--ATTT-A---------ATAAGAT-A---GGTAAGGGGGT
gi|1 : TC-CG-T-ATC-AGTATTTTTCTGAAACTGAT----------GAC-GTAC-A-A-A-TGTAT-CAA--A-T---A---A-CA-TTTT-----A-TG-------GGGA---AT-TCT-C-GACTG-TGTC-ATAAA--CAA-A---A---CT---GC--GTGTA-C-ACAA-CA-A--TTTC----ACGAAT---A--TAG-TTTGT-GTA---TT-T-AA-TATATTCTT--G-GAAGACCA-CAT-TTATTTGATAAACG-TCA--ATTT-C---------ATAAGATGA---GGTAAGGG
gi|10 : aT-CTAACACTCA-----------GA---T-C-ACACA-TGTAT-TAATTG-C---ATCCA-TA-TTTTT----G-TG-------AAAA---GT-GAT-C-AACCA-AGTC-AAAGA--CAA-A---A---CT---GCATGTACA-A-A-AAATA-A--TTTC----AAAG-T---aaaaaggtat
gi|12 : taA-A--TTTC----A-TG-T---A--T-G-TTTAT-GTA---TT-TTTA-TATATC--T--G-GA----CA-CAT-TTATCTTATAAACG-TCG--ATTC-A---------ATAAG-------GGTAcggcttatta
gi|13 : atgTC-CG-TCATC-ACCACTCT-CTGAAACTGAT----------GACAAT-T-GCA-A-TGCAT-CGGT-G-C---A---A-TG-TTTTT----T-TG-------AAGA---GT-A-T-
gi|14 : taaATTC-CG-T-ATC-AGTATTCT-CTGAAACTGAT----------GAC-GT-C-ACA-A-TGCAA-CAAC-G-C---A---A-CA-TTTTT----G-TG-------GAGA---AT-
gi|15 : cgTC-TG-C-ATC-ACCACTCT-CTGAAACTGAT--------------GT-T-GCA-A-TGCAA-TAAT-A-A---A---T-CATTTTTT----G-CG-------GAGA---A
gi|16 : tgaa-C-GACTG-CATC-ATAAA--CA----AAA---CT---GC--GTGTA-C-ACAA
gi|2 : -CAAC-G-TGCTA---A-CG-TTTTTTATAG-TGATGCACTGAGA---ATTG-TTC-GCATG-CGTC-CTAAATACAA-TCTGC---CC---GT--GTACC-ACACAACTA-A--TTTCCAATATTG-TGTTA--T-GATTTGTTGTAATCTT-TTGA-TAGAAT--T--GAGAA---TAACTTATTATCTTATAAACGCCCGATATTT-AAGCTCTCTCATAGGAT-A---GGTAGAAGGGTcgca
gi|3 : AATTC-CG-T-ATC-AGTATTCT-CTGAA-CTGAT----------GAC-GT-C-ACA-A--GTAT-CAAC-G-C---A---A-CA-TTTTT----G-TG-------GAGA---AT-G-T-CGGATTG-CATC-ATAAA--CAA-ACAAA---GC---GC--GTGCA-A-ACAAATA-A--TTTC----ACCG-T---A--T-G-TTTGT-GTA---TT-TTGA-TATATT--T--G-GAA---CA-CAT-TTATCTTATAAAT--T----ATTT-A---------AT-AGAT-AGAGGGTAAGGGGGatata
gi|4 : AATTC-CG-T-ATC-AGTATTCT-CTGAA-CTGAT----------GAC-GT-C-ACA-A--GTAT-CAAC-G-C---A---A-CA-TTTTT----G-TG-------GAGA---AT-G-T-CGGATTG-CATC-ATAAA--CAA-ACAAA---GC---GC--GTGCA-A-ACAAATA-A--TTTC----ACCG-T---A--T-G-TTTGT-GTA---TT-TTGA-TATATT--T--G-GAA---CA-CAT-TTATCTTATAAAT--T----ATTT-A---------ATAAGAT-A---GGTAAGGGGGT
gi|5 : TC-CG-T-ATC-ACCACTCG-CTGAAACTGAT----------GAC-AT-C-ACA-A-TGTAT-CAAC-A-C---A---A-CA-TTTTT----G-TG-------GGGA---AT-A-T-C-AACTG-TGTC---------------------T---GC--GTATA-A-AAAAAAA-A--TC-------CAG-T---GACT-C-TTTGT-GT----TA-TTGA-TATATT--T--T-GAA---TA-CAT-TTTTCCTAAATACA-TGG--ATTT-A-----------AAAAT-A---CATTAGGAGGT
gi|6 : ctgaaAATTCGCGGT-ATCCAGTA-TCT-CT-AAACTGATCATGAATGACGAC-GT-C-AAA-A-TG-ATGCAAT-G-C---A---GGCA-TTTTT----G-TG-------AAGACCCAT-G-T-C-AACTG-CATC--TAAA--CAATACTGA---TT---GT--CCACACA-ACAAATA-A--TTTC----ACGGTT---A--TAG-TTTGT-GTA---TTATTCACTATATC--A--G---A---CA-CAac
gi|7 : c-GC-C-ACA-A-TGCAT-CAAC-GGC---A---AACAGTTTTT----G-TG-------GAGA---AT-G-T-C-GACTGATGTC-A---A--TAA-ACAAA---TCTACGT--GTACACA-ACAAATA-A--TTTC----ACGG-T---A----G-TTTGT-ATA---TT-CGAA-GATTTT--A--G-AAA---CA-CAT-TTATCTTATAAACG-TCG--ATTTAA---------ATTAGAT-A---GGTGAGGGGc
gi|8 : t-CG-T-ATC---CACTCT-CTGAGACTGAT----------TAT--T-CAACA-GCTGCAT-C-AT-A-C---A------A-TTTTT----GTTG-------CAGA---AT-T-T-C--ACC--CGTCTATAAA--TTA---AAACTTCC---GT--GTACACA-ACAAATATAGCTTTC----GAGT-T---A--T-G-TTCGT--TA---TT-TTGA--ATATT--TTGG-AAA---CA-CAT-TTGTa
gi|9 : gatTC-TG-T-ATC-ATCACTCT-CTGAAACTGAT----------GAT-GA-C-ACA-A-TGCAT-CAAT-G-C---A---A-CATTTTTT----G-TG-------GAAA---AC-A-T-C-TACTG-CGTC-AGAAA--CA----AAA---CT---GT--GTACA-C-AAAAATA-A--TCT-----GTAG-TC--A--TGG-TTTGT--TA------TAAA-TAAATT--T--G-AA
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|11 ): GTTGANNNNNNNNNNNNNNNNNNNNNNNNNTACACTGATTCCTGTTACATAAGAATTCTAACAATGATTTTTATCATCGGCACATACATTTA
Alignments
lowQualScore : 1111111111 1111111 333333333333 111 1111111 2222222 22222222222 11111
lowQualScore : 4 4 4 4 2 1 3 5555555555 3 3 3 3 3 0 3 44 3 555 555 6 9 6666 0000000 3 555 999 3 88 3 777 55 111111111111 55 222 3 55 99999 1111111 99 9999 4 4 777 4 4 99999 4 777 4 5 0000000 33333333333 1 00000
lowQualScore : . . . . . . . .......... . . . . . . . .. . ... ... . . .... ....... . ... ... . .. . ... .. ............ .. ... . .. ..... ....... .. .... . . ... . . ..... . ... . . ....... ........... . .....
lowQualScore : 0 0 0 0 5 4 6 9999999999 3 3 3 3 3 8 1 33 1 444 444 2 2 5555 0000000 1 444 555 3 55 6 111 00 333333333333 00 111 6 00 11111 8888888 66 4444 0 4 888 4 4 00000 4 888 4 0 6666666 00000000000 7 11111
consensus : AATTC-CG-T-ATC-AGCACTCT-CTGAAACTGAT----------GAC-GT-CA-CA-A-TGCAT-CAAC-G-C---A---A-CA-TTTTT----GTG-------G-AGA---AT-G-T-C-GACTG-CGTC-A-TAAA--CAA-A-CAAAC---CGC--GTACA-A-ACAAATA-A--TT-----TC-------ACGG-TA--T-G-TTTGT-GTA---TT-TTGA-TATATT--T--G-GAA---CA-CAT-TTATCTTATAAACG-TCG--ATTT-A---------ATAAGAT-A---GGTAAGGGGGT
Reference ( family-428 ) : AATTC-CG-T-ATC-AGCACTCT-CTGAAACTGAT----------GAC-GT-CA-CA-A-TGCAT-CAAC-G-C---A---A-CA-TTTTT----GTG-------G-AGA---AT-G-T-C-GACTG-CGTC-A-TAAA--CAA-A-CAAAC---CGC--GTACA-A-ACAAATA-A--TT-----TC-------ACGG-TA--T-G-TTTGT-GTA---TT-TTGA-TATATT--T--G-GAA---CA-CAT-TTATCTTATAAACG-TCG--ATTT-A---------ATAAGAT-A---GGTAAGGGGGT
gi|1 : TC-CG-T-ATC-AGTATTTTTCTGAAACTGAT----------GAC-GTACA--A-A-TGTAT-CAA--A-T---A---A-CA-TTTT-----ATG-------G-GGA---AT-TCT-C-GACTG-TGTC-A-TAAA--CAA-A----AC---TGC--GTGTA-C-ACAA-CA-A--TT-----TC-------ACGAATA--TAG-TTTGT-GTA---TT-T-AA-TATATTCTT--G-GAAGACCA-CAT-TTATTTGATAAACG-TCA--ATTT-C---------ATAAGATGA---GGTAAGGG
gi|10 : aT-CTAACACTCA-----------GA---T-CA-CACA-TGTAT-TAATTG-C---ATCCA-TA-TTTTT----GTG-------A-AAA---GT-GAT-C-AACCA-AGTC-A-AAGA--CA-----AAAC---TGCATGTACA-A-A-AAATA-A--TT-----TC-------Aaaaaaggtat
gi|12 : taA-A--TT-----TC-------ATG--TA--T-G-TTTAT-GTA---TT-TTTA-TATATC--T--G-GA----CA-CAT-TTATCTTATAAACG-TCG--ATTC-A---------ATAAG-------GGTAaagtcggcttatta
gi|13 : atgTC-CG-TCATC-ACCACTCT-CTGAAACTGAT----------GACAAT-TG-CA-A-TGCAT-CGGT-G-C---A---A-TG-TTTTT----TTG-------A-AGA---GT-A-T-
gi|14 : taaATTC-CG-T-ATC-AGTATTCT-CTGAAACTGAT----------GAC-GT-CA-CA-A-TGCAA-CAAC-G-C---A---A-CA-TTTTT----GTG-------G-AGA---AT-
gi|15 : cgTC-TG-C-ATC-ACCACTCT-CTGAAACTGAT--------------GT-TG-CA-A-TGCAA-TAAT-A-A---A---T-CATTTTTT----GCG-------G-AGA---A
gi|16 : tgaa-C-GACTG-CATC-A-TAAA--CA-----AAAC---TGC--GTGTA-C-ACAA
gi|2 : -CAAC-G-TGCTA---A-CG-TTTTTTATAGTGATGCACTG-AGA---ATTG-TTC-GCATG-CGTC-C-TAAATACAA-T-CTGCC---CGT--GTACC-ACACAACTA-A--TT-----TCCAATATTGTGT-TA--T-GATTTGTTGTAATCTT-TTGA-TAGAAT--T--GAGAA---TAACTTATTATCTTATAAACGCCCGATATTT-AAGCTCTCTCATAGGAT-A---GGTAGAAGGGTcgca
gi|3 : AATTC-CG-T-ATC-AGTATTCT-CTGAA-CTGAT----------GAC-GT-CA-CA-A--GTAT-CAAC-G-C---A---A-CA-TTTTT----GTG-------G-AGA---AT-G-T-CGGATTG-CATC-A-TAAA--CAA-A-CAAAG---CGC--GTGCA-A-ACAAATA-A--TT-----TC-------ACCG-TA--T-G-TTTGT-GTA---TT-TTGA-TATATT--T--G-GAA---CA-CAT-TTATCTTATAAAT--T----ATTT-A---------AT-AGAT-AGAGGGTAAGGGGGatata
gi|4 : AATTC-CG-T-ATC-AGTATTCT-CTGAA-CTGAT----------GAC-GT-CA-CA-A--GTAT-CAAC-G-C---A---A-CA-TTTTT----GTG-------G-AGA---AT-G-T-CGGATTG-CATC-A-TAAA--CAA-A-CAAAG---CGC--GTGCA-A-ACAAATA-A--TT-----TC-------ACCG-TA--T-G-TTTGT-GTA---TT-TTGA-TATATT--T--G-GAA---CA-CAT-TTATCTTATAAAT--T----ATTT-A---------ATAAGAT-A---GGTAAGGGGGT
gi|5 : TC-CG-T-ATC-ACCACTCG-CTGAAACTGAT----------GAC-AT-CA-CA-A-TGTAT-CAAC-A-C---A---A-CA-TTTTT----GTG-------G-GGA---AT-A-T-C-AACTG-TGT--------------------C---TGC--GTATA-A-AAAAAAA-A--TC---------------CAG-TGACT-C-TTTGT-GT----TA-TTGA-TATATT--T--T-GAA---TA-CAT-TTTTCCTAAATACA-TGG--ATTT-A-----------AAAAT-A---CATTAGGAGGT
gi|6 : ctgaaAATTCGCGGT-ATCCAGTA-TCT-CT-AAACTGATCATGAATGACGAC-GT-CA-AA-A-TG-ATGCAAT-G-C---A---GGCA-TTTTT----GTG-------A-AGACCCAT-G-T-C-AACTG-CATC---TAAA--CAATA-CTGAT---TGT--CCACACA-ACAAATA-A--TT-----TC-------ACGGTTA--TAG-TTTGT-GTA---TTATTCACTATATC--A--G---A---CA-CAac
gi|7 : c-GC-CA-CA-A-TGCAT-CAAC-GGC---A---AACAGTTTTT----GTG-------G-AGA---AT-G-T-C-GACTGATGTC-AATAAA--CAA-ATCTA-----CGT--GTACACA-ACAAATA-A--TT-----TC-------ACGG-TA----G-TTTGT-ATA---TT-CGAA-GATTTT--A--G-AAA---CA-CAT-TTATCTTATAAACG-TCG--ATTTAA---------ATTAGAT-A---GGTGAGGGGc
gi|8 : t-CG-T-ATC---CACTCT-CTGAGACTGAT----------TAT--T-CAACA-GCTGCAT-CA-T-A-C---A---A----TTTTT----GTT-------GCAGA---AT-T-T-C--ACC--CGTCTA-TAAA--TTA-A---AACTTCCGT--GTACACA-ACAAATATAGCTT-----TC-------GAGT-TA--T-G-TTCGT--TA---TT-TTGA--ATATT--TTGG-AAA---CA-CAT-TTGTa
gi|9 : gatTC-TG-T-ATC-ATCACTCT-CTGAAACTGAT----------GAT-GA-CA-CA-A-TGCAT-CAAT-G-C---A---A-CATTTTTT----GTG-------G-AAA---AC-A-T-C-TACTG-CGTC-A-GAAA--CA-----AAAC---TGT--GTACA-C-AAAAATA-A--TCTGTAGTC-------ATGG-TT--T-G-TT
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|11 ): GTTGANNNNNNNNNNNNNNNNNNNNNNNNNTACACTGATTCCTGTTACATAAGAATTCTAACAATGATTTTTATCATCGGCACATACATTTA
Alignments
lowQualScore : 1111111111 1111111 333333333333 111 1111111 2222222 22222222222 11111
lowQualScore : 4 4 4 4 2 1 3 5555555555 3 3 3 3 3 0 3 44 3 555 555 6 9 6666 0000000 3 555 999 3 88 3 777 55 111111111111 55 222 3 55 99999 1111111 99 9999 4 4 777 4 4 99999 4 777 4 5 0000000 33333333333 1 00000
lowQualScore : . . . . . . . .......... . . . . . . . .. . ... ... . . .... ....... . ... ... . .. . ... .. ............ .. ... . .. ..... ....... .. .... . . ... . . ..... . ... . . ....... ........... . .....
lowQualScore : 0 0 0 0 5 4 6 9999999999 3 3 3 3 3 8 1 33 1 444 444 2 2 5555 0000000 1 444 555 3 55 6 111 00 333333333333 00 111 6 00 11111 8888888 66 4444 0 4 888 4 4 00000 4 888 4 0 6666666 00000000000 7 11111
consensus : AATTC-CG-T-ATC-AGCACTCT-CTGAAACTGAT----------GAC-GT-CA-CA-A-TGCAT-CAAC-G-C---A---A-CA-TTTTT----GTG-------G-AGA---AT-G-T-C-GACTG-CGTC-A-TAAA--CAA-A-CAAAC---CGC--GTACA-A-ACAAATA-A--TT-----TC-------ACGG-TA--T-G-TTTGT-GTA---TT-TTGA-TATATT--T--G-GAA---CA-CAT-TTATCTTATAAACG-TCG--ATTT-A---------ATAAGAT-A---GGTAAGGGGGT
Reference ( family-428 ) : AATTC-CG-T-ATC-AGCACTCT-CTGAAACTGAT----------GAC-GT-CA-CA-A-TGCAT-CAAC-G-C---A---A-CA-TTTTT----GTG-------G-AGA---AT-G-T-C-GACTG-CGTC-A-TAAA--CAA-A-CAAAC---CGC--GTACA-A-ACAAATA-A--TT-----TC-------ACGG-TA--T-G-TTTGT-GTA---TT-TTGA-TATATT--T--G-GAA---CA-CAT-TTATCTTATAAACG-TCG--ATTT-A---------ATAAGAT-A---GGTAAGGGGGT
gi|1 : TC-CG-T-ATC-AGTATTTTTCTGAAACTGAT----------GAC-GTACA--A-A-TGTAT-CAA--A-T---A---A-CA-TTTT-----ATG-------G-GGA---AT-TCT-C-GACTG-TGTC-A-TAAA--CAA-A----AC---TGC--GTGTA-C-ACAA-CA-A--TT-----TC-------ACGAATA--TAG-TTTGT-GTA---TT-T-AA-TATATTCTT--G-GAAGACCA-CAT-TTATTTGATAAACG-TCA--ATTT-C---------ATAAGATGA---GGTAAGGG
gi|10 : aT-CTAACACTCA-----------GA---T-CA-CACA-TGTAT-TAATTG-C---ATCCA-TA-TTTTT----GTG-------A-AAA---GT-GAT-C-AACCA-AGTC-A-AAGA--CA-----AAAC---TGCATGTACA-A-A-AAATA-A--TT-----TC-------Aaaaaaggtat
gi|12 : taA-A--TT-----TC-------ATG--TA--T-G-TTTAT-GTA---TT-TTTA-TATATC--T--G-GA----CA-CAT-TTATCTTATAAACG-TCG--ATTC-A---------ATAAG-------GGTAaagtcggcttatta
gi|13 : atgTC-CG-TCATC-ACCACTCT-CTGAAACTGAT----------GACAAT-TG-CA-A-TGCAT-CGGT-G-C---A---A-TG-TTTTT----TTG-------A-AGA---GT-A-T-
gi|14 : taaATTC-CG-T-ATC-AGTATTCT-CTGAAACTGAT----------GAC-GT-CA-CA-A-TGCAA-CAAC-G-C---A---A-CA-TTTTT----GTG-------G-AGA---AT-
gi|15 : cgTC-TG-C-ATC-ACCACTCT-CTGAAACTGAT--------------GT-TG-CA-A-TGCAA-TAAT-A-A---A---T-CATTTTTT----GCG-------G-AGA---A
gi|16 : tgaa-C-GACTG-CATC-A-TAAA--CA-----AAAC---TGC--GTGTA-C-ACAA
gi|2 : -CAAC-G-TGCTA---A-CG-TTTTTTATAGTGATGCACTG-AGA---ATTG-TTC-GCATG-CGTC-C-TAAATACAA-T-CTGCC---CGT--GTACC-ACACAACTA-A--TT-----TCCAATATTGTGT-TA--T-GATTTGTTGTAATCTT-TTGA-TAGAAT--T--GAGAA---TAACTTATTATCTTATAAACGCCCGATATTT-AAGCTCTCTCATAGGAT-A---GGTAGAAGGGTcgca
gi|3 : AATTC-CG-T-ATC-AGTATTCT-CTGAA-CTGAT----------GAC-GT-CA-CA-A--GTAT-CAAC-G-C---A---A-CA-TTTTT----GTG-------G-AGA---AT-G-T-CGGATTG-CATC-A-TAAA--CAA-A-CAAAG---CGC--GTGCA-A-ACAAATA-A--TT-----TC-------ACCG-TA--T-G-TTTGT-GTA---TT-TTGA-TATATT--T--G-GAA---CA-CAT-TTATCTTATAAAT--T----ATTT-A---------AT-AGAT-AGAGGGTAAGGGGGatata
gi|4 : AATTC-CG-T-ATC-AGTATTCT-CTGAA-CTGAT----------GAC-GT-CA-CA-A--GTAT-CAAC-G-C---A---A-CA-TTTTT----GTG-------G-AGA---AT-G-T-CGGATTG-CATC-A-TAAA--CAA-A-CAAAG---CGC--GTGCA-A-ACAAATA-A--TT-----TC-------ACCG-TA--T-G-TTTGT-GTA---TT-TTGA-TATATT--T--G-GAA---CA-CAT-TTATCTTATAAAT--T----ATTT-A---------ATAAGAT-A---GGTAAGGGGGT
gi|5 : TC-CG-T-ATC-ACCACTCG-CTGAAACTGAT----------GAC-AT-CA-CA-A-TGTAT-CAAC-A-C---A---A-CA-TTTTT----GTG-------G-GGA---AT-A-T-C-AACTG-TGT--------------------C---TGC--GTATA-A-AAAAAAA-A--TC---------------CAG-TGACT-C-TTTGT-GT----TA-TTGA-TATATT--T--T-GAA---TA-CAT-TTTTCCTAAATACA-TGG--ATTT-A-----------AAAAT-A---CATTAGGAGGT
gi|6 : ctgaaAATTCGCGGT-ATCCAGTA-TCT-CT-AAACTGATCATGAATGACGAC-GT-CA-AA-A-TG-ATGCAAT-G-C---A---GGCA-TTTTT----GTG-------A-AGACCCAT-G-T-C-AACTG-CATC---TAAA--CAATA-CTGAT---TGT--CCACACA-ACAAATA-A--TT-----TC-------ACGGTTA--TAG-TTTGT-GTA---TTATTCACTATATC--A--G---A---CA-CAac
gi|7 : c-GC-CA-CA-A-TGCAT-CAAC-GGC---A---AACAGTTTTT----GTG-------G-AGA---AT-G-T-C-GACTGATGTC-AATAAA--CAA-ATCTA-----CGT--GTACACA-ACAAATA-A--TT-----TC-------ACGG-TA----G-TTTGT-ATA---TT-CGAA-GATTTT--A--G-AAA---CA-CAT-TTATCTTATAAACG-TCG--ATTTAA---------ATTAGAT-A---GGTGAGGGGc
gi|8 : t-CG-T-ATC---CACTCT-CTGAGACTGAT----------TAT--T-CAACA-GCTGCAT-CA-T-A-C---A---A----TTTTT----GTT-------GCAGA---AT-T-T-C--ACC--CGTCTA-TAAA--TTA-A---AACTTCCGT--GTACACA-ACAAATATAGCTT-----TC-------GAGT-TA--T-G-TTCGT--TA---TT-TTGA--ATATT--TTGG-AAA---CA-CAT-TTGTa
gi|9 : gatTC-TG-T-ATC-ATCACTCT-CTGAAACTGAT----------GAT-GA-CA-CA-A-TGCAT-CAAT-G-C---A---A-CATTTTTT----GTG-------G-AAA---AC-A-T-C-TACTG-CGTC-A-GAAA--CA-----AAAC---TGT--GTACA-C-AAAAATA-A--TCTGTAGTC-------ATGG-TT--T-G-TT
blockSeqs : G G C C C C . CATGAATGAC A . A C C G TT G GCT TCC G T TATA ATGCACT C CCC GA T GG A AA TA ATACTGAT AT AC T GC TGTAG CAATATT GT ACT A T ATC A C TTG A . A A GCCCGAT AAGCTCTCTC A AGAG
blockSeqs : . . . . G T . . . . . . . . T . . . A G . . . . TG . GG . TA . AAAACTTC . CA . . . . T TA . . . . . T . . . . GTCG AA A A
blockSeqs : . . . . C C . . . . . . . . C . . . . T . . . . A . A . A . ATCTGCC . CA . . . . G T . . . . . T . . . . ATGG A A A
blockSeqs : . . . . G T . . . . . . . . T . . . . . . . . . G . G . A . AACAAAG . CA . . . . G T . . . . . T . . . . GTCG A A A
blockSeqs : . . . . G T . . . . . . . . C . . . . . . . . . G . G . C . AACAAAG . A . . . . G T . . . . . T . . . . T A T A
blockSeqs : . . . . C C . . . . . . . . C . . . . . . . . . A . A . A . AATCTA . C . . . . G T . . . . . T . . . . T A . .
blockSeqs : . . . . G C . . . . . . . . C . . . . . . . . . G . A . A . AAAC . A . . . . T T . . . . . A . . . .
blockSeqs : . . . . T C . . . . . . . . C . . . . . . . . . G . G . A . AAAC . A . . . . G T . . . . . A . . .
blockSeqs : . . . . . . . . . . . . . . T . . . . . . . . . T . T . . . AAAC . A . . . . . . .
blockSeqs : . . . . . . . . C . . . . . . . . . A . . . . . C . C . . . .
blockSeqs : . . . . . . T . . . . . . . . . .
blockSeqs : . T . . . . . . . . .
blockSeqCons : C* G** AAAC******** G* T*** T**** *** A****
originalCons : AATTC-CG-T-ATC-AGCACTCT-CTGAAACTGAT----------GAC-GT-CA-CA-A-TGCAT-CAAC-G-C---A---A-CA-TTTTT----GTG-------G-AGA---AT-G-T-C-GACTG-CGTC-A-TAAA--CAA-A-CAAAC---CGC--GTACA-A-ACAAATA-A--TT-----TC-------ACGG-TA--T-G-TTTGT-GTA---TT-TTGA-TATATT--T--G-GAA---CA-CAT-TTATCTTATAAACG-TCG--ATTT-A---------ATAAGAT-A---GGTAAGGGGGT
finalCons : AATTC-CG-T-ATC-AGCACTCT-CTGAAACTGAT----------GAC-GT-CA-CA-A-TGCAT-CAAC-G-C---A---A-CA-TTTTT----GTG-------G-AGA---ATG--T-C-GACTG-CGTC-A-TAAA--CAAAAC--------CGC--GTACA-A-ACAAATA-A--TT-----TC-------ACGG-TAT---G-TTTGT-GTA---TT-TTGA-TATATTT----G-GAA---CA-CAT-TTATCTTATAAACG-TCG--ATTT-A---------ATAAGATA----GGTAAGGGGGT
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|11 ): GTTGANNNNNNNNNNNNNNNNNNNNNNNNNTACACTGATTCCTGTTACATAAGAATTCTAACAATGATTTTTATCATCGGCACATACATTTA
Alignments
lowQualScore : 1111111111 1111111 2222222222222 111 1111111 2222222 22222222222 11111
lowQualScore : 4 4 4 4 2 1 3 5555555555 3 3 3 3 3 0 3 44 3 555 555 6 9 6666 0000000 3 555 999 3 88 3 999 3 5555555555555 77777 55 222 3 55 99999 1111111 99 9999 4 4 777 4 4 99999 4 777 4 5 0000000 33333333333 1 00000
lowQualScore : . . . . . . . .......... . . . . . . . .. . ... ... . . .... ....... . ... ... . .. . ... . ............. ..... .. ... . .. ..... ....... .. .... . . ... . . ..... . ... . . ....... ........... . .....
lowQualScore : 0 0 0 0 5 4 6 9999999999 3 3 3 3 3 8 1 33 1 444 444 2 2 5555 0000000 1 444 555 3 55 6 444 6 5555555555555 33333 00 111 6 00 11111 8888888 66 4444 0 4 888 4 4 00000 4 888 4 0 6666666 00000000000 7 11111
consensus : AATTC-CG-T-ATC-AGCACTCT-CTGAAACTGAT----------GAC-GT-CA-CA-A-TGCAT-CAAC-G-C---A---A-CA-TTTTT----GTG-------G-AGA---AT-G-T-CG-ACTG-CGTC-A-TAAAC-AAA---A-----C---CG--C--GT--ACA-A-ACAAATA-A--TT-----TC-------ACGG-TA--T-G-TTTGT-GTA---TT-TTGA-TATATT--T--G-GAA---CA-CAT-TTATCTTATAAACG-TCG--ATTT-A---------ATAAGAT-A---GGTAAGGGGGT
Reference ( family-428 ) : AATTC-CG-T-ATC-AGCACTCT-CTGAAACTGAT----------GAC-GT-CA-CA-A-TGCAT-CAAC-G-C---A---A-CA-TTTTT----GTG-------G-AGA---AT-G-T-CG-ACTG-CGTC-A-TAAAC-AAA---A-----C---CG--C--GT--ACA-A-ACAAATA-A--TT-----TC-------ACGG-TA--T-G-TTTGT-GTA---TT-TTGA-TATATT--T--G-GAA---CA-CAT-TTATCTTATAAACG-TCG--ATTT-A---------ATAAGAT-A---GGTAAGGGGGT
gi|1 : TC-CG-T-ATC-AGTATTTTTCTGAAACTGAT----------GAC-GTACA--A-A-TGTAT-CAA--A-T---A---A-CA-TTTT-----ATG-------G-GGA---AT-TCT-CG-ACTG-TGTC-A-TAAAC-AAA---A-----C---TG--C--GT--GTA-C-ACAA-CA-A--TT-----TC-------ACGAATA--TAG-TTTGT-GTA---TT-T-AA-TATATTCTT--G-GAAGACCA-CAT-TTATTTGATAAACG-TCA--ATTT-C---------ATAAGATGA---GGTAAGGG
gi|10 : aT-CTAACACTCA-----------GA---T-CA-CACA-TGTAT-TAATTG-C---ATCCA-TA-TTTTT----GTG-------A-AAA---GT-GAT-CA-ACCA-AGTC-A-AAGAC-AAA---A-----C---TG--CATGT--ACA-A-A-AAATA-A--TT-----TC-------Aaaaaaggtat
gi|12 : taA-A--TT-----TC-------ATG--TA--T-G-TTTAT-GTA---TT-TTTA-TATATC--T--G-GA----CA-CAT-TTATCTTATAAACG-TCG--ATTC-A---------ATAAG-------GGTAaagtcggcttatta
gi|13 : atgTC-CG-TCATC-ACCACTCT-CTGAAACTGAT----------GACAAT-TG-CA-A-TGCAT-CGGT-G-C---A---A-TG-TTTTT----TTG-------A-AGA---GT-A-T-
gi|14 : taaATTC-CG-T-ATC-AGTATTCT-CTGAAACTGAT----------GAC-GT-CA-CA-A-TGCAA-CAAC-G-C---A---A-CA-TTTTT----GTG-------G-AGA---AT-
gi|15 : cgTC-TG-C-ATC-ACCACTCT-CTGAAACTGAT--------------GT-TG-CA-A-TGCAA-TAAT-A-A---A---T-CATTTTTT----GCG-------G-AGA---A
gi|16 : tgaa-CG-ACTG-CATC-A-TAAAC-AAA---A-----C---TG--C--GT--GTA-C-ACAA
gi|2 : -CAAC-G-TGCTA---A-CG-TTTTTTATAGTGATGCACTG-AGA---ATTG-TTCG-CATG-CGTC-C-TAAAT-ACA---ATCTGCC---CG--T--GT--ACC-ACACAACTA-A--TT-----TCCAATATTGTGT-TA--T-GATTTGTTGTAATCTT-TTGA-TAGAAT--T--GAGAA---TAACTTATTATCTTATAAACGCCCGATATTT-AAGCTCTCTCATAGGAT-A---GGTAGAAGGGTcgca
gi|3 : AATTC-CG-T-ATC-AGTATTCT-CTGAA-CTGAT----------GAC-GT-CA-CA-A--GTAT-CAAC-G-C---A---A-CA-TTTTT----GTG-------G-AGA---AT-G-T-CGGATTG-CATC-A-TAAAC-AAACAAA-----G---CG--C--GT--GCA-A-ACAAATA-A--TT-----TC-------ACCG-TA--T-G-TTTGT-GTA---TT-TTGA-TATATT--T--G-GAA---CA-CAT-TTATCTTATAAAT--T----ATTT-A---------AT-AGAT-AGAGGGTAAGGGGGatata
gi|4 : AATTC-CG-T-ATC-AGTATTCT-CTGAA-CTGAT----------GAC-GT-CA-CA-A--GTAT-CAAC-G-C---A---A-CA-TTTTT----GTG-------G-AGA---AT-G-T-CGGATTG-CATC-A-TAAAC-AAACAAA-----G---CG--C--GT--GCA-A-ACAAATA-A--TT-----TC-------ACCG-TA--T-G-TTTGT-GTA---TT-TTGA-TATATT--T--G-GAA---CA-CAT-TTATCTTATAAAT--T----ATTT-A---------ATAAGAT-A---GGTAAGGGGGT
gi|5 : TC-CG-T-ATC-ACCACTCG-CTGAAACTGAT----------GAC-AT-CA-CA-A-TGTAT-CAAC-A-C---A---A-CA-TTTTT----GTG-------G-GGA---AT-A-T-CA-ACTG-TGTC-------------------------TG--C--GT--ATA-A-AAAAAAA-A--TC---------------CAG-TGACT-C-TTTGT-GT----TA-TTGA-TATATT--T--T-GAA---TA-CAT-TTTTCCTAAATACA-TGG--ATTT-A-----------AAAAT-A---CATTAGGAGGT
gi|6 : ctgaaAATTCGCGGT-ATCCAGTA-TCT-CT-AAACTGATCATGAATGACGAC-GT-CA-AA-A-TG-ATGCAAT-G-C---A---GGCA-TTTTT----GTG-------A-AGACCCAT-G-T-CA-ACTG-CATC---TAAAC-AAT---A-----C---TGATT--GTCCACACA-ACAAATA-A--TT-----TC-------ACGGTTA--TAG-TTTGT-GTA---TTATTCACTATATC--A--G---A---CA-CAac
gi|7 : c-GC-CA-CA-A-TGCAT-CAAC-GGC---A---AACAGTTTTT----GTG-------G-AGA---AT-G-T-CG-ACTGATGTC-AATAAAC-AAA---T-----CTA-CG--T--GT--ACACA-ACAAATA-A--TT-----TC-------ACGG-TA----G-TTTGT-ATA---TT-CGAA-GATTTT--A--G-AAA---CA-CAT-TTATCTTATAAACG-TCG--ATTTAA---------ATTAGAT-A---GGTGAGGGGc
gi|8 : t-CG-T-ATC---CACTCT-CTGAGACTGAT----------TAT--T-CAACA-GCTGCAT-CA-T-A-C---A---A----TTTTT----GTT-------GCAGA---AT-T-T-C--ACC--CGTCTA-TAAATTAAA---A-----CTTCCG--T--GT--ACACA-ACAAATATAGCTT-----TC-------GAGT-TA--T-G-TTCGT--TA---TT-TTGA--ATATT--TTGG-AAA---CA-CAT-TTGTa
gi|9 : gatTC-TG-T-ATC-ATCACTCT-CTGAAACTGAT----------GAT-GA-CA-CA-A-TGCAT-CAAT-G-C---A---A-CATTTTTT----GTG-------G-AAA---AC-A-T-CT-ACTG-CGTC-A-GAAAC-AAA---A-----C---TG--T--GT--ACA-C-AAAAATA-A--TCTGTAGTC-------ATGG-TT--T-G-TT
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|11 ): GTTGANNNNNNNNNNNNNNNNNNNNNNNNNTACACTGATTCCTGTTACATAAGAATTCTAACAATGATTTTTATCATCGGCACATACATTTA