lowQualScore : 1111111111111111111111111111111111111111111111111111111111111111111111111111111111 11111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111 1111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111 1111111111111111111111111111111111111111111111111111111111111111111111111111111111111111 1111111111111111111111111111111111111111111111111111111111111111111111111 11111
lowQualScore : 33 2 111 999999999999999999999999999999999999 9999999999999 111 1 222222 5555555555555555555555555555555555555555555555555555555555555555555555555555555555 1 11 1111 3333 2 22 1 111 333 2 33 77777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777 2222222 2 2222 11111 555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555 11111111111 2222222222222 1111111 888888888888888888888888888888888888888888888888888888888888888888888888888888888888888 222222222 1 11111 222 555555555555555555555555555555555555555555555555555555555555555 111111 111111111 55555555555555 1111 222222 222 111 2222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222 111 11111 333333333 11111 11 8888888888888888888888888888888888888888888888888888888888888888888888888888888 1 333333 22222 111 11111 0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 11 55555555555555555555555555555555555555 11 3333333333333333333 11 7777777777777777777777777777777777777777777777777777777777777777777777777 11 7777777777777777 222 1 2 00000 1 4 555555555555555555555555555 2 55555 33 2 22 2 1 222 4
lowQualScore : 00 2 2 0 6 888 6 999999999999999999999999999999999999 3 0 1111111111111 777 0 4 555555 8888888888888888888888888888888888888888888888888888888888888888888888888888888888 8 0 33 444 4444 4 1111 2 88 0 8 4 666 000 3 1 8 77 0 00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 99 6 1111111 99 0 6 0000 44444 33 999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999 5 5 33333333333 99 9999999999999 4 4 2 5 5 2222222 888 999999999999999999999999999999999999999999999999999999999999999999999999999999999999999 77 222222222 1 5 5 5 22222 111 333333333333333333333333333333333333333333333333333333333333333 444444 888 888888888 5 5 33333333333333 5 7777 55 8 333333 5 777 5 5 5 5 000 3333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333 5 000 5 5 5 5 5 22222 77 222222222 6 77777 55 1111111111111111111111111111111111111111111111111111111111111111111111111111111 7 66 0 55 000000 66 99999 77 000 00000 9999999999999999999999999999999999999999999999999999999999999999999999999999999999999999 11 8888 6 55555555555555555555555555555555555555 77 2222222222222222222 99 77 6666666666666666666666666666666666666666666666666666666666666666666666666 88 8888888888888888 111 5 3 7 2 00000 5 0 6 555555555555555555555555555 0 88888 11 0 77 0 5 555 2 0
lowQualScore : .. . . . . ... . .................................... . . ............. ... . . ...... .................................................................................. . . .. ... .... . .... . .. . . . ... ... . . . .. . .......................................................................................................................... .. . ....... .. . . .... ..... .. ......................................................................................................... . . ........... .. ............. . . . . . ....... ... ....................................................................................... .. ......... . . . . ..... ... ............................................................... ...... ... ......... . . .............. . .... .. . ...... . ... . . . . ... ....................................................................................................... . ... . . . . . ..... .. ......... . ..... .. ............................................................................... . .. . .. ...... .. ..... .. ... ..... ........................................................................................ .. .... . ...................................... .. ................... .. .. ......................................................................... .. ................ ... . . . . ..... . . . ........................... . ..... .. . .. . . ... . .
lowQualScore : 00 5 5 0 0 888 7 333333333333333333333333333333333333 7 7 7777777777777 555 0 2 222222 5555555555555555555555555555555555555555555555555555555555555555555555555555555555 8 0 22 222 5555 0 5555 8 22 4 4 4 000 777 2 4 0 55 6 88888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888 22 7 7777777 22 0 7 8888 33333 77 666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666 0 0 66666666666 55 2222222222222 4 4 0 0 0 1111111 888 666666666666666666666666666666666666666666666666666666666666666666666666666666666666666 99 999999999 4 7 7 7 99999 888 999999999999999999999999999999999999999999999999999999999999999 444444 888 000000000 7 7 55555555555555 0 2222 55 2 222222 7 777 7 7 7 7 000 2222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222 7 000 7 7 7 7 7 99999 99 333333333 7 00000 33 6666666666666666666666666666666666666666666666666666666666666666666666666666666 6 99 0 11 000000 44 99999 99 000 44444 7777777777777777777777777777777777777777777777777777777777777777777777777777777777777777 00 6666 7 88888888888888888888888888888888888888 55 5555555555555555555 22 11 0000000000000000000000000000000000000000000000000000000000000000000000000 33 0000000000000000 000 0 0 5 5 00000 0 0 0 000000000000000000000000000 0 00000 00 0 55 0 0 555 5 0
consensus : NNNNNNNNNNNNNNNNNNNNNNNNNNNATTTTTANATTNANCTGAGTCCGAAGGTCNAATGAGCT-ATTCTNN-TCGCCTGTTGTC-GT------C--TCCGTCTGTCCGTCCGTCCGTCTGTCC-------------GTTAA---CT-TTTACATTTT-CGACTTCTTC---TTCAAGGGGANNCCNTCGTGCGTGGGCCG--AATTC-AACCAAA-CT--TGNN------ANANANTCATN-CTTG----GGGTG-AAGGGGA-TTCGAGG--TTGTNCAANA--TAAAGGACCAGGCCCCCA-TCAAAGGGGAGA-TAATCACG-AAAATG--CAAAAATAGGGTG-GTGTCATTT-AAAAAATCT----A--TCTTCTCA--AAGAAC-CACTGGGGGCCAGAAAA-GC-TG-----------------TAAAT-TTA------TACG-A--AG--CTTCCTG---ATATC--------GGNNG-AGATTC--AA-GT-------TTG--TT-AA-AT----CATGACC-----CCCGGGGG-TA--CG---ATG--GGGCCCCA-AA---A-----GGGG--A-T-----CAA----AGT--TT-T-T----AC-AT-A--T-GAT-TAT--A------T-N--GGG-A-AA--TCT------TT--TAAAA--A---ATCTT-CTCT-CAAG-AACCACT-GG-G----C-CAG---AAAA-GCT------GAA-AT-TT---A------CAT-GAA--AG----CTT-C-T--G------TA----TA------G-GTGGA-NN--GATTC--A---------AG-TTGT-TC-AA-AT----CATG-GACC------CCCG-----GGG--TA--CGA--TG--G-GCC----NCA---ATAG-GG-----GA-TCAA------AGT---TTTACAT-A-----T-GAT-TAT---N-TA---NG--G-GGAAAA----T--TTTAAAAAA---ATCTT-CTCT-CAAGAA-CCACT-GG-GC-CAG---AAAA-GCT------GAAAT-T--------TAT--A--T---GAA--AG--C-TTCCT--GA-----T-A----T--A------GT----N--GAG--AT------TC-A---AG-TT-GT-TC-AA-AT----CATG--ACC-----CCC-GGGG-TA--CGATG-NGGCC-N-CAATNAGGGGATC-AA----GTTT-T--C-CAT------G---AT--TTA----TA--------------TA-G--GGGAAAAT--C-TTT-TAAAA------T-CTTCT--T--C--A---AGA---A-CCACT--G-G-------C---------------CAG---AAAA-GCT-----------------TTCCTG-ATA--A---AGTCGAGATTCAAGTTTG--TTCAA-ATCATGACCCCC------GGGGG-TAC-NACGTGG-GG-CCA-CNNTAGAGGGATCAAAGTTTNACATA-CGANTA------TAT--AGGGAAAATCTTT--TAAAA---T-CT-TCTCA------TC--GAACCA--GA-G--------G-TGGA--TATTTACCT-TG--AAAGCTTCCT--GATG-TG-AGT-GAG-ATTCAAGTTTGTTTCAGATNATGGCCNCCCCC-----TCTGAGGAGTTGGGTGGCGGCCGCACATAGCGGGTGAATNTAAGAGTTGCTGCTACCTTAATGCTCTTCTTTAGTGAAAGCAGTATGCCTCGGGTGAGGCGATGTGGCCCATGGGCCTCTCGTTGTTTGTTA
Reference ( gi|1 ) : TAATATATGATTTTTTAACAGGGTGTAATTTTTAGCTTCACCTGAA-CTGAAGGTTCAGTGAGCT-ATTCTGCCTCGCTTGCCGTC-GT------CC-TCCGTCTGTCCGTCCGTCCGTCTGTCTG------------GTTAA---TT-TTCACATTTT-CGACTTCTTC---CTCAAG---AAACC-----GC-TGGGCCA--AATTCCAACCAAG-CT--TGGC------ACACATTCATC-CTTG----GGGTG-AAGGGGA-TTCGGGG--TTGTTCAAT---TAAAGGTCCAGGCCCCCAATCAAAGTGGAGA-TAATCAGG-AAAATG-AAAAAAATAGGGTGCGTGTCATT--AAAAAATCT-------TCTTCTCA--AAGAACGCACT--TGGCCAGAAAA-GC-TG-----------------CAAAT-TTA------TATG----AG--CTTTCTG---ATATT--------GGTGG-AGATTC--AA-GT-------TTG--TT-AA-AT----CATGACC-----CCCGGGTG-TA--CG---ATG--GGGCCCCAAAA---A-----GGGG--A-T-----AAA----AGT--TT-T-T----AC-AT-A--T-GAT-TAT--A------T-T--GGG-A-AA--TCT------TT--TAAAA--A---ATCTT-TTCT-CAAG-AACCACT-GG-G----C-CAG---AAAA-GCT------GAA-AT-TT---A------TAT-GAA--AG----CTT-C-T--G------TA----TA------G-GTGGA-TC--AATTC--A---------AG-TTGT-TC-AA-AT----CATG-GACC------CC-------GGG--TA--CGA--TG--G-GCC----CCA---ATAG-AG-----G--TCAA------AGT---TTTACAT-A-----T-GAT-TAT---T-TA---AG--G-GGAAAA----T--TTCAAAAAA---ATCTT-CTCT-TAAGAA-CCACT-GG-GC-CAG---AAAA-GCT------GAAAT-T--------T-T--A--T---GAA--AG--C-TTCCT--GA-----T-A----T--A------GT--G-G--GAG--AT-----GTC-A---AG-TT-GT-TC-AA-AT----CATG--ACC-----CAC-GGGG-TA--CGATG-AGGCC-C-CAATAAAAGGATC-AG----GTTT-T--C-CAT------G---AT--TTA----TA--------------TA-G--GGGAAAAT--C-TTT-TAAAA------T-CTTCT--T--C--A---AGA---A-CCACT--G-G-------C---------------CAG---GAAA-GCT-----------------TTCCTG-ATA--A---AGTGAAGGTAAAAGTTTG--TTCAA-ATTATGACCTCC------AGGTG-TAC-CATATGG-GG-CCA-CAATAAAGGGATCAATATTTTTCATAGCAAATA------TAT--AGGGAAATTCTTTTATAAAA---T-CTATCTCA------TT--GAACCA--GACGCC-----CGCTGGA-ATATTTACCTTTGACAAAGCTTCCT--GATG-TG-AGT---A-ATTAAAGTTTGTTTCAGATAATTGCCCCCCCCCCCCTTCTCAGG-GTTGAGTGG-GGC-ACAGATAACGGG---ATTTAA-AGTTGCTAC-ACTT----GCTCTTCTTTAGTG-AAGCAG--TGTTTCAGGTGA-GCGATGTGGCCCATGGG-CTCTTGTTGTTT-TTAG
gi|11 : ATTTTTACATTGAACTGAGTCCAAAGATCAAATCAGCT-TTTCTGA-TCGCCTTTTGTCTAT------CG-TCTGTCTGTCCGTCCGTCCTTCTGTTTGTCAGCCTTGTCTGTTAA---TTGTTAGCATTTT----CTTCT
gi|12 : TTTTAG-TTCACCTGAA-CCGAAGGTTC--TGA--T-A----AC--CATTTGT--TC-AT------C-------------GTCTGTCTGTCTGACT-------------GTTAATTTTT-TTTACATTTT-CGATTTTTTC---TCCAA
gi|7 : ttatatatgcatatttacaAATGAGCTGATTCTTGATCGCCTGTTGTC-GTGTCTTTCTGTCCGTCTGTCTGTCTGTCCGTCTGTCC--------------TTAA---CT-TTCACATTTT-CGAC-TCTTCTCGTTC-AG---ACACTA----AC-TGGA-CG--AATTC--ACCAAGACTTATGTT------AAATA-TCATC-CT------GGGTGAAAGGGGACTTCAAAGCTTTGTTCCAT---GACAGA-CCAGG-CCCCATTC--AGGGGAGA-TAATC
gi|2 : TAA---CT-TTTACATTTTTCG--CTCTTC----TCAGGGGGAATCCTTCGTGTGTGGGCCATAAATTC-AACCCAA-CT--TGGGGGTTAGACACAATCTTTACCTGTAAAGGGTA-CAAGGG--TTTGGGG--TAATACAATATATAAAGA--CAGTCC----ATTAAAG---AGACTAATCAAGCAGAATG-CAAAAA-TAGGGGGTGGTTCATTGGAAAAAAACTGAATA--TC-TCT-A--TAGAACCTACTGGGGGGCAGCAAA-GCATGGAGCTTTTAAGGCAGACTAGAT-TTA------TAC------A--CTTAGTA---ATATC--------ACAGGAAGATTTCAAA-GT-------TTGTTTT-CA-ATA---CATTACC-----T----GTGATA--CGCACATG--GGG-TCCACAA---A-----TAGG--ATT-----CAA----AGT--TTAT-TAAACAC-AT-A--T--AT-AAT--A------A-T--AGATACAA--TCTACAGTCTTAGTAAAA--ATATATCTT-CTTT-TAAG-A--TACT-TG-GTGTTC-AAG---TAAA-G-T------GAATAA-TT---A------CAC-AAT--A------TT-C-T--G------
gi|4 : --AATTCCAATCACA-TT--TGTC------ATAAAGT-ATG-CTTG----GG-TG-AAGGGGA-TTCAAGG--T-GAACAAA---TGAAGAAACATGCCTCC--TTTAAGAGGGGG-------GG-----TG-CACAAA-TAGGG--CGGGTAATTT-AAAACAT------------TCTCA--A-GAAT-CACT----G--AGTAAA-AA-TA-----------------TAAAT-TTA------CAAG----AAAACTTCATG---ACAT---------GAAAT-AGATTC--AA-GT-------TTA--TTAAA-AT----CATGAAA-----CCCGGAGA-TG--GA---GCG--GGGTC---------ATCTTTGGGG--A-T-----TAA----A-T--TT-T-T----A--AT-A--A-TATATAC--A------TGT--AGG-G-AA----------------AAAA--A---------TTCT-CAAG-AA
gi|14 : gaccCAAA-CT--TGG------------TCCAT----------GGTTG-AAGGGAA-TTAAAAA--TTGTTCAAAA--TAAAGGCCCAATTTCTCATTTAAAAGGGAGA-CAATCAC--AAAATG-GCAAAAATAGGG
gi|16 : GGACCAGGCCCCCA-TCAAAGGGGAGA-TAATCACG-AAAATG--CAAAAATAGGGTG-GTGTC
gi|17 : GGACCAGGCCCCT--TTAAAGGGGAGA-TAATCACG-AAAATG--CAAAAATA-GGTG-GTGT
gi|19 : CCAGGCCCCCA-TCAAAGGGGAGA-TAATCACA-AAAATG-
gi|18 : gaCCCCCTTCAAGGGGAAGA-TAATCACT-AAAATGCAAAAAAATAGGGTG-GTGT
gi|20 : GAGA-TGATTAAG-AAAATG--CAAAAATAGGGTG-GTGTCAt
gi|5 : AAAAATAGGGTG-GTGTCATTTTAAAACATCT-------TATTCTCA--AGAAAC-CACTGGTGCTCAGAAAACGC-TG------------------AAATCTTACCTTGTTATGGAATAG--C-TTCTGAGTATATTCCCTGTTCGACTG-AAATTC--AAGGTCATTCAGTTG--TC-AA-ATTGTCCATTAACTTATACGCGGG-G-TAATCG----TG--GCGCCCC--AG---T-----GGGGCCA-TTGTCCATACCCTAGC--TT-TAT----ACAAT-ATTT-GAT-TATTAG------T-A--GGG-A-AAATTCT------TT--TTAAA--A---
gi|3 : TCTTT--GAAAAATAT--------CATCTCA--A-GATC-CACT--GGGCCAGAAAA-GC-T-----------------------------------------------TTCTG----TAT----------GTCG-AGCTTC--A--TT-------TTG--TTCAACAT----CATGACC-----CCAGGG-G-TA-------ATGTCGGGCAC---AG---A-----AGGG--A-T-----CAT----A----TT-T-A----AC-A--A--TCAAT-TAT---------T-A--GGG-A-AT--TCT------TT--TTAAA--A---TACTT-CTT----------CATT-GA-A----A-CAG---ACGA-GTG------GAT-AT-TT---A------CCT-GAA--AG----CTTCC-T--G-------A----T-------G-ATGGAGTT--GAGAT--A---------AG-TTGT-TT-AG-AT----AATGCCATC------CCCTCTGAGGAG--TT--GGG--TGGCG-GCC----GCA---AACG-GG-----A--TTAA------AGT---Tg
gi|6 : gattcaagttgtttcaatatgaccctggggataaaatgagggcgacaataggggactcaaagtagttttacatgatgattatatataaggaaaaAAAATCTTTTAAAATCTTCTCAACAAGAAC-CACT--GGGCCAGAAAA-GC-TG------------------AAAT-TTA------TATGAA--AG--CTTCCTT---ATA-T--------AGTGG-AGATTC--AA-GT-------TTG--TTCAA-AT----CATGACC-----CCCGGGGG-TA--CG---ATG--TGGCCCC-TAT---A-----GAGG--A-T-----CAA----AG---TT-T-T----AC-CT-A--T-GAT-CAT--A------T-A--GGG-A-AA--gctactactgctcttcttagtgaagcagtgtttcaggtgaggcgatgtggccatgggcctctttgtttgtta
gi|3 : atgacccccgggggtacgatgtggcccctttaggggatcaaagttttacctatgatcatatcgggGATTC--AA-GT-------TGT--TT-CA-AT-----ATGACC-----CTGGGG-A-TA--AA---ATGA-GGGCGACAATA---G-----GGGA--C-T-----CAA----AGTAGTT-T-T----AC-ATGA--T-GAT-TAT--A------TATAAGGA-A-AA--TCT------TT---GAAA--A---ATATC-ATCT-CAAG-ATCCACT-GG-G----C-CAG---AAAA-GCT-----------------------------------------TT-C-T--G------TA----T---------GTCGA-GC----TTC--A---------TT-TTGT-TC-AACAT----CAT--GACC------CCAG-----GGG--TA----A--TGTCG-GGC----ACA---GAAG-GG-----A--TCAT------A-T---TTAACA--A-----TCAAT-TAT---T------AG--G-G---AATTCTT--TTTAAAATA-----CTT-CT----------TCATT-GA-AA-CAG---ACGA-GTG------GATAT-T--------TAC--C--T---GAA--AG--C-TTCCT--GA-----TGA----TGGA------GT----T--GAG--AT---------A---AG-TT-GT-TT-AG-AT----AATG--atc
gi|6 : ATGACC-----CCCGGGGG-TA--CG---ATG--TGGCCCC----TTTA-----GGGG--A-T-----CAA----AGT--TT-T------AC-CT-A--T-GAT-CAT--A------T-C--GGG-A-AAA-TCT------TT--TAAAA-------TCTT-CTCAACAAG-AACCACT-GG-G----C-CAG---AAAA-GCT------GAA-AT-TT---A------TAT-GAA--AG----CTT-C-C--T------TA----TAT-----A-GTGGA-----GATTC--A---------AGTTTGT-TC-AA-AT----CAT--GACC------CCCGG----GGG--TA--CGA--TGT-G-GCC----CCT---ATAG-AG-----GA-TCAA------AGT---TTTACCT-A-----T-GAT-CAT---A-TA-------G-GGAAAA----T--ccatcccctctgaggagttgggtggcggccgcaaacgggattaaagttgctactactgctcttcttagtgaagcagtgtttcaggtgaggcgatgtggccatgggcctctttgtttgtta
gi|8 : CCACAAT--A-----GGAG--C-T-----CAA----AGT--TT-C------AC-AT-G--C-AAA-TAT--ACATGTAT-A--GAG-A-AA--TC-------TT--TAAAA--T---AT-TC-TTCT-CAAG-AACT-TT-GA-A----C-TAG---AA-----T-------AT-AT-TT---A------CCT-GAA--TG----CTT-C-C---------T-----TA------G-ATGGA-c
gi|10 : ccccctcgggtagagtttagCT------TTA-TAAAACTG---ATTTA-TTCT-CAAG-AACCACTGGG-G----C-CAGAACAAAA-GCTAGAACAAAA-AT-TTTCGA------TATGGAA--AGGACATTC-C-T--GAGCAGTTAGTATTA------GTGTGGA-GG--AATTTCAA---------AG-TTGTATCAAA-AT----CAgtatatttgattt
gi|5 : T------TT--TAAAA--C---ATCTTATTCT-CAAGAAACCACT-GGTG----CTCAG---AAAACGCT------GAA-ATCTT---ACCTTGTTAT-GGAATAG----CTT-C-TGAG------TA----TATTCCCTG-TTCGA-CTGAAATTC--AAGGTCATTCAG-TTG--TC-AA-ATTGTCCATT-AACTTATACGCG-------GGG--TAATCG---TG--GCGCC----CCA---GTGG-GGCCATTG--TCCATACCCTAGC---TTTATAC-AATATTT-GAT-TAT---T------AGTAG-GGAAAA----T--T
gi|4 : aaaaatagggtggtgtca------TT--TAAAA--C---AT-----TCT-CAAG-AATCACT-GA-G----T-------AAAA-ATA------TAA-AT-TT---A------CAA-GAA--AA----CTT-CAT--G-------A----CA------T-G-AAA-TA--GATTC--A---------AGTTTAT-TA-AA-AT----CATG-AAAC------CC-------GGA-------GA--TG--G-AGCGGGGTCATCTTTGG-GG-----A--TTAA------ATT---TTTA----A-----T-AATATAT---A-CATGTAG--G-GAAAAAAAT-T--CTCAAGAActttttaaaag
gi|3 : gaccaattccaatcacatttgtcataaagtatgcttgggtgaaggggattcaaggtgaacaaatgaagaaacatgcctcctttaagagggggggtgcacaaatagggcgggtaaATTC--A---------AG-TTGT-TT-CA-AT-----ATG--ACC------CT-------GGGGATA--AAA--TGAGG-GCG----ACA---ATAG-GG-----GACTCAA------AGTAGTTTTACATGA-----T-GAT-TAT---A-TA---TA--A-GGAAAA----T--CTTTGAAAA---ATATC-ATCT-CAAGAT-CCACT-GG-GC-CAG---AAA-------------------------------------------AG--C-TTTCT--G------T-A----T---------GT----C--GAG--CT------TC-A---TT-TT-GT-TC-AACAT----CATG--ACC-----CCA-GGGG-TA----ATGTCGGGC-A-CA--GAAGGGATC-AT----ATTTAA--C-AAT------C---AA--TTA----T---------------TA-G--GG--AATT--CTTTT-TAAAA------TACTTCT--T--C--ATTGAAACAGA-CGAGT--G-GATATTTAC---------------C-T---GAAA-GC------------------TTCCTG-ATG--ATGGAGTTGAGATAAG---TTG--TTTAG-ATAATGCCATCCCCTCTGAGGAG-T---TGGGTGGCGG-CCG-CA--AACGGGATTAA
gi|6 : g-GACC------CCCGG----GGG--TA--CGA--TGT-G-GCC----CCT---TTAG-GG-----GA-TCAA------AGT---TTTACCT-A-----T-GAT-CAT---A-TC-------G-GGAAAA----TCTTTTAAAA------TCTT-CTCAACAAGAA-CCACT-GG-GC-CAG---AAAA-GCT------GAAAT-T--------TAT--A--T---GAA--AG--C-TTCCT--TA-----T-A----T--A------GT----G--GAG--AT------TC-A---AGTTT-GT-TC-AA-AT----CATG--ACC-----CCCGGGGG-TA--CGATG-TGGCC-C-CTAT-AGAGGATCAAA----GTTT-TACC-TAT------G---A---TCA----TA--------------TA----GGGAAAAT--C-agttgctactactgctcttcttagtgaagcagtgtttcaggtgaggcgatgtggccatgggcctctttgtttgtta
gi|8 : atCC------TC-------GGG--TA---GAGTTT--A-GCC----ACA---ATAGGAG-----C--TCAA------AGT---TTCACAT-G-----C-AAA-TATACATGTA---TA--G-AGAAAT----C--TTTAAAATA---TTCTT-CTC---AAGAA-CT-TT-GA-AC-TAG---AA-----T---------ATAT--------T-T--ACCT---GAA--TG--C-TTCCTTAGA-----T-G----G--A------GT--
gi|4 : ccc-TA---GG--GCGGGTAA----T--TT----AAA---ACATT-CTC---AAGAA-TCACT-GA-GT-------AAAA-ATA------TAAAT-T--------TAC--A--A---GAA--AA--C-TTCAT--GA-----C-A----TGAA------AT--------AG--AT------TC-A---AG-TTTAT-TA-AA-AT----CATGAAACC-----CG--GAGA-TG--GAGCG-GGGTCAT-C--TTTGGGGATT-AA----ATTT-T--T-AAT------A---AT--ATA----TACATG----------TA-G--GGAAAAAatatttgattt
gi|5 : gaccaattccaatcacatttgtcataaagtatgcttgggtgaaggggattcaaggtgaacaaatgaagaaacatgcctcctttaagagggggggtgcacaaaA----T--TTTAAAACA----TCTTATTCT-CAAGAAACCACT-GGTGCTCAG---AAAACGCT------GAAAT-CTTACCTTGT-T--A--T---GGAATAG--C-TT-CT--GAG----T-A----T--ATTCCCTGTTCG-ACTGAA--ATTCAAGGTC-ATTCAG-TT-G--TC-AA-ATTGTCCATT--AACTTATACGC-GGGG-TAATCG-TG-GCGCC-C-CAGT---GGGGCC-A------TTG-T--C-CATACCCTAG---CT--TTA----TACAATATTTGATTATTA-GTAGGGAAAATTCT-TTT-TAAAA------aattctcaagaa
gi|10 : aaaaatagggtggtgtc--TTTATAAAACTGATTTA-TTCT-CAAGAA-CCACTGGG-GC-CAGAACAAAA-GCTAGAACAAAAAT-T--------T-TCGA--TATGGAA--AGGACATTCCT--GAGCAGTT-AGTATT--A------GT--GTG--GAGGAAT-----TTCAA---AG-TT-GTATCAAA-AT----CAg
gi|3 : cG--AT------TC-A---AG-TT-GT-TT-CA-AT-----ATG--ACC-----CTG-GGGA-TA--AAATG-AGGGC-GACAATAGGGGACTC-AAAGTAGTTT-T--A-CAT------G---ATGATTA----TA--------------TATA--AGGAAAAT--C-TTT-GAAAAATA---T-CATCT-----C--A---AGA---T-CCACT--G-GG------C---------------CAG---AAAA-GCT-----------------TTC-TGTAT--------GTCGAGCTTCA-TTTTG--TTCAACATCATGACC-CC------AGGGG-TA---ATGTCG-GG-C-A-CAG--AAGGGATCA-TATTTAACA-ATCAATTA------T-T--AGGGAA-TTCTTTT-TAAAA---TACTTCTTCA------TT--GAAACA--GACG--------AGTGGA--TATTTACCT--GA--AAGCTTCCT--GATGATGGAGTTGAG-AT--AAGTT-GTTT-AGATAAT-GCCATCCCC-----TCTGAGGAGTTGGGTGGCGGCCGCA---AACGGG---ATT-AA-AGTTGCTACTACT-----GCTCTTCTT-AGTG-AAGCAG--TGTTTCAGGTGAGGCGATGTGG-CCATGGG-C-CTCTTTGTTTGTTA
gi|6 : ATG--ACC-----CCC-GGGGGTA--CGATG-TGGCC-C-C-TTTAGGGGATCAAA----GTTT-TACC-TAT------G---A---TCA----TA--------------T--C--GGGAAAAT--C-TTT-TAAAA------T-CTTCT--CAAC--A---AGA---A-CCACTG-G-G-------C---------------CAG---AAAA-GCTGAAATTTATATGAAAGCTTCCTT-ATA--T---AGTGGAGATTCAAGTTTG--TTCAA-ATCATGACCCCC------GGGGG-TAC-GATGT---GG-CCC-CTATAGA-GGATCAAAGTTTTACCTA-TGATCA------TAT--AGGGAAAATC
gi|8 : GCC-A-CAATAGGAGC-TC-AA----AGTT-T--CACAT------GCAAAT--ATACATGTA--------------TA-G--AG--AAAT--C-TTT--AAAA------T-ATTCTTCT--C--A---AGA---A-C
gi|5 : ccccctcgggtagagtttaA--------------TA-G--GGTGGTGT--CATTT-TAAAACA----T-CTTAT--T--CTCA---AGA---AACCACT--G-GTGC----T---------------CAG---AAAACGCT-----------------tttgaactagaatatatttacctgaatgcttccttagatggagtatatttgattt
gi|10 : aaaa--C-TTTATAAAACTGATTT-ATTCT-----C--A---AGA---A-CCACTGGG-G-------C---------------CAGAACAAAA-GCT-----------------gaaatcttaccttgttatggaatagcttctgagtatattccctgttcgactgaaattcaaggtcattcagttgtcaaattgtccattaacttatacgcggggtaatcgtggcgccccagtggggccattgtccataccctagctttatacaatatttgattattagtagggaaaattctttttaaaag
gi|4 : TT-TAAAA------C-ATTCT-----C--A---AGA---A-TCACT--GAG-------TAAAAATATAAATTTACAA---GAAA-ACT-----------------T-CATG-ACATGA---AAT--AGATTCAAGTTTA--TTAAA-ATCATGAAACCCGG----AGATG-GAG-C----GG-GG-TCATCTTTG--GGGATTAA-ATTTTTAATAATATATA------CATGTAGGGAAAagaacaaaaattttcgatatggaaaggacattcctgagcagttagtattagtgtggaggaatttcaaagttgtatcaaaatca
gi|2 : gaccaattccaatcacatttgtcataaagtatgcttgggtgaaggggattcaaggtgaacaaatgaagaaacatgcctcctttaagagggggggtgcacaaatagggcgggtaaAAAGTTTGTTTTCAA-TACATTACCT----------GTGATACGCACATGG-GGTCCA-CAA-ATAGGATTCAAAGTTTATTA-AACACATA------TAT--Aaaaattctcaagaa
gi|6 : taacttttacatttttcgctcttctcagggggaatccttcgtgtgtgggccataaattcaacccaacttgggggttagacacaatctttacctgtaaagggtacaagggtttggggtaatacaatatataaagacagtccattaaagagactaatcaagcagaatgcaaaaatagggggtggttcattggaaaaaaactgaatatctctatagaacctactggggggcagcaaagcatggagcttttaaggcagactagatttatacacttagtaatatcacaggaagatttcATGACCCCC------GGGGG-TAC-GATGTGG----CCC-CTTTAG-GGGATCAAAGTTTTACCTA-TGATCA------TAT--CGGGAAAATCTTT--TAAAA---T-CT-TCTCA------ACAAGAACCACTGG-GCCAGAAAAGCTGAA---ATTTA--TATG--AAAGCTTCCT--TATA-T--AGTGGAG-ATTCAAGTTTG-TTCAAATCATGACCCCCataatagatacaatctacagtcttagtaaaaatatatcttcttttaagatacttggtgttcaagtaaagtgaataattacacaatattctg
gi|8 : G-CCA-CAATAG-GAGCTCAAAGTTTCACAT-GCAAATATACATGTAT--AGAGAAA-TCTT---TAAAATATT-CT-TCTCAAGAACTTT--GAACTA--GA---------------ATATATTTACC--TG--AATGCTTCCTTAGATG--G-AGT---ATATTgggggtacgatgtggcccctatagaggatcaaagttttacctatgatcatatagggaaaatc
gi|13 : ccccctcgggtagagtttaGC-ACACATAG-GGGTGAATGTAAGAGTTGCTGT-ACCTTAATGCTCTTCTTT-GTGAAAGCAGTATGCCTCAGtgattt
gi|15 : gataatgccttcccatcgaggaaggtggaattggcatgtTCGGGTGA-GCGATGTGACCCATGGGCCTCTTG
1 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|9 ): TAGACCAGAAAAACTTAACCAGCATAGAAGTTTCATTATATATAAATTATTAAGGTTTGTTTGGATCATGATTTCCAGAGCTGGGGATGTTCTACAGGGTGGGGGGGGGGGTGTTAAAGTTTTAACTAGAAGTATAGGAAAATTCTT
Alignments
lowQualScore : 11 22 1 1 222 66666666666 33333333 22222 111 111 111111 6666666666666666666666666 111 11 1 11 33333333 1111 1111 1 111 11 44444444444 1 1 22222 1111 999999999999999999999999999999999999999999999999999999999999999999999999 11 1 3333333 11 1 3333 1111 11 1111 44444444444 22222 1111 222222 11 3333333 333333333333333333 1111 1 2222 1 2 22 2 1 333 2 1 22 333 2 333 555555 5555 2 3333 888888888888888 2 22222 1 1 1 11 22 2 2 4444 22 2 333 1 2 1 222222 1 11 2 11 3333 111111 1 11 333333 11 22222 1 1 333333 77777777777 333333 11 2222 44444444 1 1 2 33333 111 555555555555 1 333 1 2 111 44444 2 33 11 1 1
lowQualScore : 66 1 1 44 3 1 0 2 0 2 999 0 2 66666666666 3 0 66666666 55555 444 444 8 000000 2222222222222222222222222 2 555 33 0 33 00000000 1 1 4444 1 3 7777 5 6 3 8 111 1 0 99 8 99 4 4 4 888 4 66 4 5 66 8 99 3 88888888888 55 0 0 99999 3 0000 111111111111111111111111111111111111111111111111111111111111111111111111 33 0 2222222 33 0 1111 7777 8 11 7777 11111111111 00000 1 8 7777 8 555555 88 11 3 8 0000000 1 555555555555555555 4444 2 0 0 3 8888 6 3 0 6 0 88 0 5 777 0 1 4 6 5 3 1 33 4 555 4 0 555 777777 0000 0 7777 444444444444444 1 0 77777 3 3 3 6 33 2 1 2 11 0 0 2222 2 77 0 3 555 4 5 4 0 5 333333 2 0 66 88 0 55 7777 6 6 666666 2 1 88 6 1 888888 7 7 8 7 88 77777 3 3 888888 6 66666666666 666666 88 4444 11111111 5 5 1 3 11 33333 7 000 555555555555 0 5 77 777 4 3 444 88888 7 7 3 00 0 2 33 6 6 7 5
lowQualScore : .. . . .. . . . . . . ... . . ........... . . ........ ..... ... ... . ...... ......................... . ... .. . .. ........ . . .... . . .... . . . . ... . . .. . .. . . . ... . .. . . .. . .. . ........... .. . . ..... . .... ........................................................................ .. . ....... .. . .... .... . .. .... ........... ..... . . .... . ...... .. .. . . ....... . .................. .... . . . . .... . . . . . .. . . ... . . . . . . . .. . ... . . ... ...... .... . .... ............... . . ..... . . . . .. . . . .. . . .... . .. . . ... . . . . . ...... . . .. .. . .. .... . . ...... . . .. . . ...... . . . . .. ..... . . ...... . ........... ...... .. .... ........ . . . . .. ..... . ... ............ . . .. ... . . ... ..... . . . .. . . .. . . . .
lowQualScore : 33 0 0 33 3 0 2 5 0 5 000 2 5 00000000000 2 2 22222222 00000 555 000 0 666666 9999999999999999999999999 5 888 22 0 88 88888888 0 0 2222 0 2 0000 0 0 2 0 888 0 8 66 0 66 4 4 0 444 4 11 4 0 99 0 22 0 55555555555 88 0 0 00000 5 2222 222222222222222222222222222222222222222222222222222222222222222222222222 88 0 5555555 88 0 2222 2222 0 00 8888 44444444444 00000 4 0 0000 0 888888 66 00 2 0 0000000 0 888888888888888888 8888 5 2 0 2 3333 7 3 7 7 0 55 0 0 555 0 0 0 0 5 0 0 00 0 000 0 0 000 555555 5555 0 5555 000000000000000 0 0 77777 3 3 3 7 00 5 0 5 00 5 0 5555 5 55 0 0 000 0 5 0 0 0 555555 5 5 55 00 0 77 3333 7 7 333333 0 0 00 0 0 333333 3 3 3 3 33 77777 3 3 333333 0 77777777777 333333 33 0000 88888888 5 0 0 3 77 33333 3 000 333333333333 7 0 33 333 0 3 777 33333 3 3 7 77 7 0 33 7 7 3 0
consensus : NNNNNNNNNNNNNNNNNNNNNNNNNNNATTTTTAG-TTCACCTGAA-CCGAAGGT-CCGATGAGCT-ATTCTGN-TCGCCTGTTGTC--GTCN-----TCCGTCTGTCCGTCCGTCC--------GTC-----TGTCTG-TTAATTTTT---A-CATTTT-CGACTTCTTC---TTCAAG--GAAACC--C--GC-TGGGCC--AAATTC-AACCAA-ACT--TG------NCACACANTC-ATNCTTG----GGGTG-AAGGGGA-TTCGAGG--TTGTTCAATATA-AAGGACCAGGCCCCCA-TC-AA-AGGGGAGA-TAATCACG-AAAATG-C--AAAAA-TAGGGTG-GTG--TCA-TT-TAAAANATC----T-TCTTCTCAAAGAAC-C-ACTGGGG-NCAGNAAA-GC-TG-----------------TAAAT-TTA------TACG-A---AGCTTNNTGA-TA----------TCGANGG-AGATTC--AA-GT-------TTG--TT-AAAT----CATGACCCC---CG-GGGGTA--CG---ATGGGGCCC-CAANA-----GGG-----GATCA-A----AGTTT-T-T----AC-ATA--TGAT-TAT--A----TAGGGA-AAA-TCT------TT--TAAAAA---ATCTTCTCT-CAAGAACCACTGGG----CCAGAAAAGCTGAA-ATTTATACGAAAGCTTCCGTATATGGTGGATCGATTCAAGTTTGTTCAAATCATGGACCCCCGGGGGTACGATGTGGCCCCNATAGAGGATCAAAGTTTTACNTATGATCATNTAAGGGGAAAATTTCANAAAACTGATCTNCTCTCAAGAACCACTGGGGCCAGAACAAAAGCTAGAACAGAAATTTTCGATATGGAAAGGACATTCCTGAGCAGTTAGTATTAGTGTGGGAGA---T-TC-AAGTTGT-TC-AAATCATGACCCNNGGGGTACGATGAGGNCNACAATAAGGGGACTCAGAGTAGTTTTNCATGATGATTATATATGGGGAAAATCTTTNAAAAATATCNTCTTCAAGANCCACTGGGCCAGGAAAGCTTTCCTGTATAAAGTCGAGNTNNAANTTTGTTCAACATCATGACCCCCAGGGGTA--ATGTCGGGCCACAATAAAGGGATCAAAGTTTNACATN-CAAATA------TATAGGGAAATTCTTT--TAAAA---T-CT-TCT-CA------TTGAACCAGACG---GNTGG-ATATTTACC-TTG--AAAGCTTCCT--GATG-TG-AGT-GAGATTAAAGTTTGTTTCAGATAATG-CCNTCCCC-----TCTGAGGAGTTGGGTGG---CGGC-----CGCA-ATAACGGG---AT-TAA-AGTTGCTACTACC----TGCTCTTCTTTAGTG-AAGCAG--TGTCTCAGGTGAGGCGATGTGGCCCATGGGCCTCTTGTTGTTTGTTA
Reference ( family-9 ) : NNNNNNNNNNNNNNNNNNNNNNNNNNNATTTTTANATTNANCTGAGTCCGAAGGT-CNAATGAGCT-ATTCTNN-TCGCCTGTTGTC--GTC------TCCGTCTGTCCGTCCGTCC--------GTC-----TGTCCG-TTAACTTTT---A-CATTTT-CGACTTCTTC---TTCAAGGGGANNCCNTCGTGCGTGGGCC--GAATTC-AACCAA-ACT--TG------NNANANANTC-ATNCTTG----GGGTG-AAGGGGA-TTCGAGG--TTGTNCAANATA-AAGGACCAGGCCCCCA-TC-AA-AGGGGAGA-TAATCACG-AAAATG-C--AAAAA-TAGGGTG-GTG--TCA-TT-TAAAAAATC----TATCTTCTCAAAGAAC-C-ACTGGGGGCCAGAAAA-GC-TG-----------------TAAAT-TTA------TACG-A---AGCTTCCTGA-TA----------TCGGNNG-AGATTC--AA-GT-------TTG--TT-AAAT----CATGACCCC---CG-GGGGTA--CG---ATGGGGCCC-CAAAA-----GGG-----GATCA-A----AGTTT-T-T----AC-ATA--TGAT-TAT--A----TNGGGA-AA--TCT------TT--TAAAAA---ATCTTCTCT-CAAGAACCACTGGG----CCAGAAAAGCTGAA-ATTTACATGAAAGCTTCTGTATA-GGTGGANNGATTCAAG-TTGTTCAAATCATGGACCCCC-GGGGTACGATG-GGCCNCAATAGGGGATCAAAGTTTTACATATGATTATNTANGGGGAAAATTTTAAAAAA---ATCTTCTCTCAAGAACCACT-GGGCCAG---AAAAGCT------GAAATTT---ATAT-GAAAG--C-TTCCTGA-----TA-TA-----GTNG-AGA---T-TC-AAGTTGT-TC-AAATCATGACCCCCGGGGTACGATGNGGCCN-CAATNAGGGGA-TCAA----GTTTTCCATGAT--TTATATA-GGGGAAAATCTTTTAAAA---TCTTCTTCAAGAACCACTGG-CCAGAAAAGCTTTCCTG-ATAAAGTCGAGATTCAAGTTTGTTCAA-ATCATGACCCCCGGGGGTACNACGTGGGGCCACNNTAGAGGGATCAAAGTTTNACATA-CGANTA------TATAGGGAAAATCTTT--TAAAA---T-CT-TCT-CA------TCGAACCAGA-----GGTGG-ATATTTACC-TTG--AAAGCTTCCT--GATG-TG-AGT-GAGATTCAAGTTTGTTTCAGATNATGGCCNCCCCC-----TCTGAGGAGTTGGGTGG---CGGC-----CGCACATAGCGGGTGAATNTAAGAGTTGCTGCTACCTTAATGCTCTTCTTTAGTGAAAGCAGTATGCCTCGGGTGAGGCGATGTGGCCCATGGGCCTCTCGTTGTTTGTTA
gi|1 : ATTTTTAGCTTCACCTGAA-CTGAAGGT-TCAGTGAGCT-ATTCTGCCTCGCTTGCCGTC--GTCC-----TCCGTCTGTCCGTCCGTCC--------GTC-----TGTCTGGTTAATTTTC---A-CATTTT-CGACTTCTTC---CTCAAG---AAACC-----GC-TGGGCC--AAATTCCAACCAA-GCT--TG------GCACACATTC-ATCCTTG----GGGTG-AAGGGGA-TTCGGGG--TTGTTCAAT-TA-AAGGTCCAGGCCCCCAATC-AA-AGTGGAGA-TAATCAGG-AAAATG-A--AAAAAATAGGGTGCGTG--TCA-TT--AAAAAATC----T-TCTTCTCAAAGAACGC-ACTTGG--CCAGAAAA-GC-TG-----------------CAAAT-TTA------TATG-A----GCTTTCTGA-TA----------TTGGTGG-AGATTC--AA-GT-------TTG--TT-AAAT----CATGACCCC---CG-GGTGTA--CG---ATGGGGCCC-CAAAAA----GGG-----GATAA-A----AGTTT-T-T----AC-ATA--TGAT-TAT--A----TTGGGA-AA--TCT------TT--TAAAAA---ATCTTTTCT-CAAGAACCACTGGG----CCAGAAAAGCTGAA-ATTTATATGAAAGCTTCTGTATA-GGTGGATCAATTCAAG-TTGTTCAAATCATGGACCCC---GGGTACGATG-GGCCCCAATAGAGG-TCAAAGTTTTACATATGATTATTTAAGGGGAAAATTTCAAAAAA---ATCTTCTCTTAAGAACCACT-GGGCCAG---AAAAGCT------GAAATTT----TAT-GAAAG--C-TTCCTGA-----TA-TA-----GTGGGAGA---TGTC-AAGTTGT-TC-AAATCATGACCCACGGGGTACGATGAGGCCC-CAATAAAAGGA-TCAG----GTTTTCCATGAT--TTATATA-GGGGAAAATCTTTTAAAA---TCTTCTTCAAGAACCACTGG-CCAGGAAAGCTTTCCTG-ATAAAGTGAAGGTAAAAGTTTGTTCAA-ATTATGACCTCCAGGTGTACCATATGGGGCCACAATAAAGGGATCAATATTTTTCATAGCAAATA------TATAGGGAAATTCTTTTATAAAA---T-CTATCT-CA------TTGAACCAGACGCCCGCTGGAATATTTACCTTTGACAAAGCTTCCT--GATG-TG-AGT---AATTAAAGTTTGTTTCAGATAATTGCCCCCCCCCCCCTTCTCAGG-GTTGAGTGG----GG------CACAGATAACGGG---ATTTAA-AGTTGCTAC-ACT----TGCTCTTCTTTAGTG-AAGCAG--TGTTTCAGGTGA-GCGATGTGGCCCATGGG-CTCTTGTTGTTT-TTA
gi|10 : taatatatgattttttaacagggtgtaTTTATAAAACTGATTTATTCTCAAGAACCACTGGGGCCAGAACAAAAGCTAGAACAAAAATTTTCGATATGGAAAGGACATTCCTGAGCAGTTAGTATTAGTGTGG-AGGAATT-TCAAAGTTGTATCAAAATCAg
gi|11 : cATTTTTACATTGAACTGAGTCCAAAGAT-CAAATCAGCT-TTTCTGA-TCGCCTTTTGTCT-ATCG-----TCTGTCTGTCCGTCCGTCCTTCTGTTTGTCAGCCTTGTCTG-TTAATTGTT---AGCATTTT----CTTCT
gi|12 : TTTTAG-TTCACCTGAA-CCGAAGGTTCTGATAA-CC-ATT----------TGTT----------------CATC-----GTCTGTCT--------GTC-----TGACTG-TTAATTTTTTTTA-CATTTT-CGATTTTTTC---TCCAA
gi|13 : ttatatatgcatatttacaGATAATG-CCTTCCCA-----TC-GAGGAA---GGTGGAATTGGCATGTGCACACATAG-GGGTGAATGTAAGAGTTGCTG-TACCTTAATGCTCTTCTTT-GTGAAAGCAGTATGCCTCAG
gi|14 : ----GGTTG-AAGGGAA-TTAAAAA--TTGTTCAAAATA-AAGGCCCAATTTCTCA-TTTAA-AAGGGAGA-CAATCAC--AAAATGGC--AAAAA-TAGGG
gi|15 : caaacttggtccatCTCGGGTGAG-CGATGTGACCCATGGGCCTCTTG
gi|16 : tttaaaattctttttgaaatcgattactgctgagtcagggccaagtttaGGACCAGGCCCCCA-TC-AA-AGGGGAGA-TAATCACG-AAAATG-C--AAAAA-TAGGGTG-GTG--TC
gi|17 : GGACCAGGCCCCT--TT-AA-AGGGGAGA-TAATCACG-AAAATG-C--AAAAA-TA-GGTG-GTG--T
gi|18 : CCCCCT-TC-AA-GGGGAAGA-TAATCACT-AAAATG-CAAAAAAA-TAGGGTG-GTG--T
gi|19 : GACCAGGCCCCCA-TC-AA-AGGGGAGA-TAATCACA-AAAATG-t
gi|2 : TAACTTTT---A-CATTTTTCG--CTCTTC---T-CAGGGGGAATCCTTCGTGTGTGGGCCATAAATTC-AACCCA-ACT--TGGGGGTTAGACACAATCTTTACCTGTAAAGGGTACAAGGG---TTTGGGG--TAATACAATATATAAAGA-CAG---TCCA-TT-AA-A---GAGACTAATCAAGCAGAATG-C--AAAAA-TAGGG-G-GTGGTTCA-TTGGAAAAAAACTGAATATC-TCT-ATAGAAC-CTACTGGGGGGCAGCAAA-GCATGGAGCTTTTAAGGCAGACTAGAT-TTA------TAC-------ACTTAGTAA-TA----------TCACAGGAAGATTTCAAA-GT-------TTGTTTT-CAATA---CATTACCT-------GTGATA--CGCACATGGGGTCCACAAAT-----AGG-----ATTCA-A----AGTTTAT-TAAACAC-ATA--T-AT-AATA-A----TAGATACAA--TCTACAGTCTTAGTAAAAATATATCTTCTTT-TAAGA--TACTTGGTGTTCAAGTAAAG-TGAATAATTACACAATA--TTCTG
gi|20 : GAGA-TGATTAAG-AAAATG-C--AAAAA-TAGGGTG-GTG--TCA-
gi|3 : GA---T-TC-AAGTTGT-TT-CAAT-ATGACCCTGGGGATAAAATGAGGGCGACAAT-AGGGGACTCAAAGTAGTTTTACATGATGATTATATATAAGGAAAATCTTTGAAAAATATCATCT-CAAGATCCACTGGGCCAGAAAAGCTTTC-TGTAT---GTCGAGCTTCA-TTTTGTTCAACATCATGACCCC-AGGGGTA--ATGTCGGGC-ACAG--AAGGGATCATA-TTTAACAAT-CAATTA------T-TAGGGAATTCTTTT--TAAAA---TACT-TCTTCA------TTGAAACAGACG---AGTGG-ATATTTACC-T-G--AAAGCTTCCT--GATGATGGAGTTGAGAT--AAGTT-GTTT-AGATAATG-CCATCCCC-----TCTGAGGAGTTGGGTGG---CGGC-----CGCA---AACGGG---AT-TAA-AGTTGCTACTAC-----TGCTCTTC-TTAGTG-AAGCAG--TGTTTCAGGTGAGGCGATGTGG-CCATGGGCCTCT--TTGTTTGTTA
gi|4 : GACC--AATTCC-AATCAC-ATT--TG------TCATAAAGT--ATGCTTG----GG-TG-AAGGGGA-TTCAAGG---TGAACAA-ATG-AAGAAACATGCCTCCT-TT-AAGAGGGGGG--------------GTG-C--ACAAA-TAGGGCG-G-G--TAA-TT-TAAAACA----------TTCTC-AAGAAT-C-ACTG------AGTAAA-AA-TA-----------------TAAAT-TTA------CAAGAA---AACTTCATGA-CA----------T-GAAAT-AGATTC--AA-GT-------TTA--TTAAAAT----CATGAAACC---CG-GAGATG--GA---GCGGGGTC------ATCTTTGGG-----GATTA-A----A-TTT-T-T----A----A--TAATATAT--ACATGTAGGGA-------------------AAAAA---AT----TCT-CAAGAA
gi|5 : --AAAAA-TAGGGTG-GTG--TCATTT-TAAAACATC----T-TATTCTCAAGAAAC-C-ACTGGTGCTCAGAAAACGC-TG------------------AAATCTTACCTTGTTATG-GAATAGCTT-CTGAGTATATTCCCTGTTCGACTG-AAATTC--AAGGTCATTCAGTTG--TC-AAATTGTCCATTAACTTATACGCGGGGTAATCG----TGGCGCCC-CAGTG-----GGGCCATTGTCCATACCCTAGCTT-TAT----ACAATATTTGAT-TATTAG----TAGGGA-AAATTCT------TT--TTAAAA---
gi|6 : ATGACCCC---CG-GGGGTA--CG---ATGTGGCCC-CTTTA-----GGG-----GATCA-A----AGTTT-T------AC-CTA--TGAT-CAT--A----TCGGGA-AAA-TCT------TT--TAAAA-----TCTTCTCAACAAGAACCACTGGG----CCAGAAAAGCTGAA-ATTTATATGAAAGCTTCCTTATATAGTGGA--GATTCAAGTTTGTTCAAATCAT-GACCCCCGGGGGTACGATGTGGCCCCTATAGAGGATCAAAGTTTTACCTATGATCATATA--GGGAAAATg
gi|7 : AATGAGCTGATTCTTGATCGCCTGTTGTCGTGTCTTTCTGTCCGTCTGTCTGTCTGTCC--------GTC-----TGTCC--TTAACTTTC---A-CATTTT-CGAC-TCTTCTCGTTCA----GACACTAAC-----TGGA-C--GAATTC--ACCAAGACTTATG------TTAAATA-TC-ATCCT------GGGTGAAAGGGGACTTCAAAGCTTTGTTC--CATG-ACAGACCAGGCCCCAT-TC----AGGGGAGA-TAATCc
gi|8 : CCCCCTCGGGTA-GA-GTTTAGCCACAATAG-GAGCTCAAAGTTTCACATG-CAAATATACATGTATAGAG-AAATC-TT--TAAAATATT-CT-TCT-CAAGAACTTTGAACTAGA------AT---ATATTTACC--TG--AATGCTTCCTTAGATG--G-AGT-
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|9 ): TAGACCAGAAAAACTTAACCAGCATAGAAGTTTCATTATATATAAATTATTAAGGTTTGTTTGGATCATGATTTCCAGAGCTGGGGATGTTCTACAGGGTGGGGGGGGGGGTGTTAAAGTTTTAACTAGAAGTATAGGAAAATTCTT
Alignments
lowQualScore : 222 1 2222 11 1 11 33333333333 33333333 22222 11 111 111111 4444444444444444444444444 11 11 1 11 33333333 1 11 1111 111 222 33333333333 1 1 3333333 1111 888888888888888888888888888888888888888888 11 1 44444444444444 11 1 3333333 11 1 3333 1111 11 1111 2222222 22222 1111 222222 11 3333333 2222222222 1111 1 2222 1 1 11 1 1 222 1 1 11 222 1 222 222222 11 222 2222 333333333333333 2222 1 1 1 11 1 1 2222 11 1 222 1 1 1 1 222 111 1 11 1 11 333333 11 11 22222 1 1 333333 44444444444 33 11 11 333 2222 11 1 1 1 33333 22 11 1111 4444 3333333 1 11 2222 1 11 11 1
lowQualScore : 222 3 8888 2 33 0 11 2 66666666666 1 6 2 0 0 66666666 55555 22 444 8 000000 9999999999999999999999999 2 33 33 0 33 00000000 0 0 0 2 11 3 7777 5 8 88 111 1 0 99 8 99 4 4 4 888 4 66 4 5 66 999 1 00000000000 55 0 0 4444444 1 0000 666666666666666666666666666666666666666666 11 0 55555555555555 111 33 0 2222222 33 0 1111 7777 8 11 7777 0000000 00000 1 8 7777 8 555555 88 11 3 8 0000000 1 66 8 5555555555 4444 2 0 0 3 8888 6 3 0 2 5 88 5 5 000 5 1 5 1 1 88 1 000 1 5 111 999999 77 111 3333 222222222222222 2222 3 3 3 6 22 2 1 66 5 5 4444 1 88 5 1 111 1 5 1 5 5 5 111 2 1 777 1 5 6 88 3 6 7 7 2 1 44 888888 7 66 88 77777 3 3 888888 22222222222 77 88 88 444 2222 88 5 5 3 1 33333 7 00 88 5555 4444 7 7777777 3 44 6 8888 7 7 3 88 33 6 6 7 5
lowQualScore : ... . .... . .. . .. . ........... . . . . . ........ ..... .. ... . ...... ......................... . .. .. . .. ........ . . . . .. . .... . . .. ... . . .. . .. . . . ... . .. . . .. ... . ........... .. . . ....... . .... .......................................... .. . .............. ... .. . ....... .. . .... .... . .. .... ....... ..... . . .... . ...... .. .. . . ....... . .. . .......... .... . . . . .... . . . . . .. . . ... . . . . . .. . ... . . ... ...... .. ... .... ............... .... . . . . .. . . .. . . .... . .. . . ... . . . . . . ... . . ... . . . .. . . . . . . .. ...... . .. .. ..... . . ...... ........... .. .. .. ... .... .. . . . . ..... . .. .. .... .... . ....... . .. . .... . . . .. .. . . . .
lowQualScore : 000 3 4444 5 55 0 00 5 22222222222 0 5 5 2 2 22222222 00000 55 000 0 666666 6666666666666666666666666 5 88 22 0 88 00000000 2 2 8 5 00 2 0000 0 0 88 888 4 8 88 0 66 4 4 0 444 4 11 4 0 99 222 0 88888888888 88 0 0 5555555 0 2222 555555555555555555555555555555555555555555 88 0 22222222222222 555 88 0 5555555 88 0 2222 2222 0 00 8888 0000000 00000 4 0 0000 0 888888 66 00 2 0 0000000 0 44 0 6666666666 8888 5 2 0 2 3333 7 3 7 5 5 00 5 0 000 5 0 5 0 0 00 0 555 0 0 000 555555 55 000 5555 000000000000000 7777 3 3 3 7 00 5 0 55 5 0 0000 0 00 5 0 555 0 5 0 0 0 5 555 5 0 555 0 0 7 33 7 7 3 3 0 0 33 333333 3 00 33 77777 3 3 333333 33333333333 00 33 33 000 3333 55 5 0 3 0 33333 3 77 33 3333 0000 3 7777777 3 00 7 3333 3 3 3 33 33 7 7 3 0
consensus : NNNNNNNNNNNNNNNNNNNNNNNNNNNATTTTTA-G-TTCACCTGAA-CCGAAGGTC-AATGAGCT-ATTCT-GA-TCGCCTNTTGTC-GT-------CGTCCGTCTGTCCGTCCGTCC--------GTC-----TGTCTG-TTAA---TTTTTA-CATTTT-CGACTTCTTC---TTCAAGG--AA-CC--CGC---TGGGCCA--AATTC-AACCAA-ACT--TGNC------ACACANTCATC-CTTG----GGGTG-AAGGGGA-TTCGAGG--TTGTTCAATATA-AAGGACCAGGCCCCCA-TC-AA-AGGGGAGA-TAATCACG-AAAATG-C--AAAAA-TAGGGTG-GTG--TCATT-T-AAAANATCT-----TCTTCTCAAAGAAC-C-ACT-GG-G-NCAGNAAA-GC-TG-----------------TAAAT-TTA------TACG-A---AGCTTNNTGA-TA----------TCG-ANGGAGATTC--AA-GT-------TTG--TT-AAAT----CATGACCCC---CG-GGGGTA--CG---ATGGGGCCC-C-ANTNGGG-----GATCA-A----AGTTT-T-T----AC-ATA--TGAT-TAT--A----TAGGGAAAA-TCT------TT--TAAAAA---ATCTTCTCT-CAAGAACCACTGGG----CCAGAAAAGCTGAA-ATTTATACGAAAGCTTCCGTATATGGTGGATCGATTCAAGTTTGTTCAAATCATGGACCCCCGGGGGTACGATGTGGCCCCNATAGAGGATCAAAGTTTTACNTATGATCATNTAAGGGGAAAATTTCANAAAACTGATCTNCTCTCAAGAACCACTGGGGCCAGAACAAAAGCTAGAACAGAAATTTTCGATATGGAAAGGACATTCCTGAGCAGTTAGTATTAGTGTGGGGGA--T-TC-AAGTTGT-TC-AAATCATGACCCNNGGGGTACGATGAGGNCNACAATAAGGGGACTCAGAGTAGTTTTNCATGATGATTATATATGGGGAAAATCTTTNAAAAATATCNTCTTCAAGANCCACTGGGCCAGGAAAGCTTTCCTGTATAAAGTCGAGNTNNAANTTTGTTCAACATCATGACCCCCAGGGGTA--ATGTCGGGCCACAATAAAGGGATCAAAGTTTNACAT-GCAAATA------TATAGGGAAATCCTTT--TAAAA---T-CT-TC-TCA------TTGAACCAGACG---GNTGG-ATATTTACC--TG--AAAGCTTCCT--GATG-T-GAG-TGAGATTAAAGTTTGTTTCAGATAA-TGCCNTCCCC-----TCTGAGGA-GTTGGG--TGGCGG-CGCA---ATAACGGGA-T-----TAA-AGTTGCTACTACCT----GCTCTTCTTTAGTG-AAGCAG--TGTCTCAGGTGAGGCGATGTGGCCCATGGGCCTCTTGTTGTTTGTTA
Reference ( family-9 ) : NNNNNNNNNNNNNNNNNNNNNNNNNNNATTTTTA-G-TTCACCTGAA-CCGAAGGTCCGATGAGCT-ATTCT-GN-TCGCCTGTTGTC-GT-------CNTCCGTCTGTCCGTCCGTCC--------GTC-----TGTCTG-TTAA---TTTTTA-CATTTT-CGACTTCTTC---TTCAAGG--AAACC--CGC---TGGGCCA--AATTC-AACCAA-ACT--TGNC------ACACANTCATN-CTTG----GGGTG-AAGGGGA-TTCGAGG--TTGTTCAATATA-AAGGACCAGGCCCCCA-TC-AA-AGGGGAGA-TAATCACG-AAAATG-C--AAAAA-TAGGGTG-GTG--TCATT-T-AAAANATCT-----TCTTCTCAAAGAAC-C-ACT-GG-GGNCAGNAAA-GC-TG-----------------TAAAT-TTA------TACG-A---AGCTTNNTGA-TA----------TCG-ANGGAGATTC--AA-GT-------TTG--TT-AAAT----CATGACCCC---CG-GGGGTA--CG---ATGGGGCCC-C-AANAGGG-----GATCA-A----AGTTT-T-T----AC-ATA--TGAT-TAT--A----TAGGGAAAA-TCT------TT--TAAAAA---ATCTTCTCT-CAAGAACCACTGGG----CCAGAAAAGCTGAA-ATTTATACGAAAGCTTCCGTATATGGTGGATCGATTCAAGTTTGTTCAAATCATGGACCCCCGGGGGTACGATGTGGCCCCNATAGAGGATCAAAGTTTTACNTATGATCATNTAAGGGGAAAATTTCANAAAACTGATCTNCTCTCAAGAACCACTGGGGCCAGAACAAAAGCTAGAACAGAAATTTTCGATATGGAAAGGACATTCCTGAGCAGTTAGTATTAGTGTGGGAGA--T-TC-AAGTTGT-TC-AAATCATGACCCNNGGGGTACGATGAGGNCNACAATAAGGGGACTCAGAGTAGTTTTNCATGATGATTATATATGGGGAAAATCTTTNAAAAATATCNTCTTCAAGANCCACTGGGCCAGGAAAGCTTTCCTGTATAAAGTCGAGNTNNAANTTTGTTCAACATCATGACCCCCAGGGGTA--ATGTCGGGCCACAATAAAGGGATCAAAGTTTNACAT-NCAAATA------TATAGGGAAATTCTTT--TAAAA---T-CT-TC-TCA------TTGAACCAGACG---GNTGG-ATATTTACC-TTG--AAAGCTTCCT--GATG-T-GAG-TGAGATTAAAGTTTGTTTCAGATAA-TGCCNTCCCC-----TCTGAGGA-GTTGGG--TGGCGGCCGCA---ATAACGGGA-T-----TAA-AGTTGCTACTACCT----GCTCTTCTTTAGTG-AAGCAG--TGTCTCAGGTGAGGCGATGTGGCCCATGGGCCTCTTGTTGTTTGTTA
gi|1 : ATTTTTA-GCTTCACCTGAA-CTGAAGGTTCAGTGAGCT-ATTCT-GCCTCGCTTGCCGTC-GT-------CCTCCGTCTGTCCGTCCGTCC--------GTC-----TGTCTGGTTAA---TTTTCA-CATTTT-CGACTTCTTC---CTCAAGA--AA--C--CGC---TGGGCCA--AATTCCAACCAA-GCT--TGGC------ACACATTCATC-CTTG----GGGTG-AAGGGGA-TTCGGGG--TTGTTCAAT-TA-AAGGTCCAGGCCCCCAATC-AA-AGTGGAGA-TAATCAGG-AAAATG-A--AAAAAATAGGGTGCGTG--TCATT---AAAAAATCT-----TCTTCTCAAAGAACGC-ACT-TG-G-CCAGAAAA-GC-TG-----------------CAAAT-TTA------TATG-A----GCTTTCTGA-TA----------TTG-GTGGAGATTC--AA-GT-------TTG--TT-AAAT----CATGACCCC---CG-GGTGTA--CG---ATGGGGCCC-CAAAAAGGG-----GATAA-A----AGTTT-T-T----AC-ATA--TGAT-TAT--A----TTGGG-AAA-TCT------TT--TAAAAA---ATCTTTTCT-CAAGAACCACTGGG----CCAGAAAAGCTGAA-ATTTATATGAAAGCTTCTGTATA-GGTGGATCAATTCAAG-TTGTTCAAATCATGGACCCC---GGGTACGATG-GGCCCCAATAGAGG-TCAAAGTTTTACATATGATTATTTAAGGGGAAAATTTCAAAAAA---ATCTTCTCTTAAGAACCACT-GGGCCAG---AAAAGCT------GAAATTTT--AT---GAAAG--C-TTCCTGA-----TA-TA-----GTGGGAGA--TGTC-AAGTTGT-TC-AAATCATGACCCACGGGGTACGATGAGGCCC-CAATAAAAGGA-TCAG----GTTTTCCATGAT--TTATATA-GGGGAAAATCTTTTAAA---ATCTTCTTCAAGAACCACT-GGCCAGGAAAGCTTTCCTG-ATAAAGTGAAGGTAAAAGTTTGTTCAA-ATTATGACCTCCAGGTGTACCATATGGGGCCACAATAAAGGGATCAATATTTTTCATAGCAAATA------TATAGGGAAATTCTTTTATAAAA---T-CTATC-TCA------TTGAACCAGACGCCCGCTGGAATATTTACCTTTGACAAAGCTTCCT--GATG-T-GAG-T--AATTAAAGTTTGTTTCAGATAATTGCCCCCCCCCCCCTTCTCAGG--GTTGAG--TGG-GG-CACAG--ATAACGGGATT-----TAA-AGTTGCTAC-ACTT----GCTCTTCTTTAGTG-AAGCAG--TGTTTCAGGTGA-GCGATGTGGCCCATGGG-CTCTTGTTGTTT-TTA
gi|10 : taatatatgattttttaacagggtgtaTTTATAAAACTGATTTATTCTCAAGAACCACTGGGGCCAGAACAAAAGCTAGAACAAAAATTTTCGATATGGAAAGGACATTCCTGAGCAGTTAGTATTAGTGTGGAGGAATT-TCAAAGTTGTATCAAAATCAg
gi|11 : cATTTTTACA-TTGAACTGAGTCCAAAGATCAAATCAGCT-TTTCT-GA-TCGCCTTTTGTCTAT-------CGTCTGTCTGTCCGTCCGTCCTTCTGTTTGTCAGCCTTGTCTG-TTAA---TTGTTAGCATTTT----CTTCT
gi|12 : TTTTA-G-TTCACCTGAA-CCGAAGGT-------------TCT-GA-TAACCATTTGT---T-------CATC-GTCT--------GTCT--------GTC-----TGACTG-TTAATTTTTTTTA-CATTTT-CGATTTTTTC---TCCAA
gi|13 : ttatatatgcatatttacaGATAA-TGCCTTCCCA-----TC-GAGGAAGGTGGAATTGGCATGTGCACACATA--GGGG-TGAATGTAAGAGTTGCTG-TACCTTAATGCTCTTCTTT-GTGAAAGCAGTATGCCTCAG
gi|14 : ----GGTTG-AAGGGAA-TTAAAAA--TTGTTCAAAATA-AAGGCCCAATTTCTCA-TTTAA-AAGGGAGA-CAATCAC--AAAATGGC--AAAAA-TAGGG
gi|15 : caaacttggtccatCTCGGGTGAG-CGATGTGACCCATGGGCCTCTTG
gi|16 : tttaaaattctttttgaaatcgattactgctgagtcagggccaagtttaGGACCAGGCCCCCA-TC-AA-AGGGGAGA-TAATCACG-AAAATG-C--AAAAA-TAGGGTG-GTG--TC
gi|17 : GGACCAGGCCCCT--TT-AA-AGGGGAGA-TAATCACG-AAAATG-C--AAAAA-TA-GGTG-GTG--T
gi|18 : CCCCCT-TC-AA-GGGGAAGA-TAATCACT-AAAATG-CAAAAAAA-TAGGGTG-GTG--T
gi|19 : GACCAGGCCCCCA-TC-AA-AGGGGAGA-TAATCACA-AAAATG-t
gi|2 : TAA---CTTTTA-CATTTTTCG--CTCTTC---T-CAGGGGGAATCCTTCGTGTGTGGGCCATAAATTC-AACCCA-ACT--TGGGGGTTAGACACAATCTTTACCTGTAAAGGGTA-CAAGGG--TTTGGGG--TAATACAATATATAAAGAC-AG---TCCA-TT-AA-AG---AGACTAATCAAGCAGAATG-C--AAAAA-TAGGG-G-GTGGTTCATTGG-AAAAAAACTGAATATC-TCT-ATAGAAC-CTACTGGG-GGGCAGCAAA-GCATGGAGCTTTTAAGGCAGACTAGAT-TTA------TAC-------ACTTAGTAA-TA----------TCACAGGAAGATTTCAAA-GT-------TTGTTTT-CAATA---CATTACCT-------GTGATA--CGCACATGGGGTCCAC-AAATAGG-----ATTCA-A----AGTTTAT-TAAACAC-ATA--T-AT-AATA-A----TAGATACAA-TCTACAGTCTTAGTAAAAATATATCTTCTTT-TAAGA--TACTTGGTGTTCAAGTAAAG-TGAATAATTACACAA
gi|20 : GAGA-TGATTAAG-AAAATG-C--AAAAA-TAGGGTG-GTG--TCAtattctg
gi|3 : GA--T-TC-AAGTTGT-TT-CAAT-ATGACCCTGGGGATAAAATGAGGGCGACAATA-GGGGACTCAAAGTAGTTTTACATGATGATTATATATAAGGAAAATCTTTGAAAAATATCATC-TCAAGATCCACTGGGCCAGAAAAGCTTT-CTGTAT---GTCGAGCTTC-ATTTTGTTCAACATCATGA-CCCCAGGGGTA--ATGTCGGG-CACA--GAAGGGATCATA-TTTAACAA-TCAATTA------T-TAGGGAATTCTTTT--TAAAA---TACT-TCTTCA------TTGAAACAGACG---AGTGG-ATATTTACC--TG--AAAGCTTCCT--GATGATGGAGTTGAGAT--AAG-TTGTTT-AGATAA-TGCCATCCCC-----TCTGAGGA-GTTGGG--TGGCGGCCGCA-----AACGGGA-T-----TAA-AGTTGCTACTA-CT----GCTCTTC-TTAGTG-AAGCAG--TGTTTCAGGTGAGGCGATGTGG-CCATGGGCCTCT--TTGTTTGTTA
gi|4 : GACCA--ATTCC-AATCAC-ATT--TGTC------ATAAAGT-ATG-CTTG----GG-TG-AAGGGGA-TTCAAGG---TGAACAA-ATG-AAGAAACATGCCTCCT-TT-AAGAGGGGGG--------------GTG-C--ACAAA-TAGGGCG-G-G--TAATT-T-AAAACA----------TTCTC-AAGAAT-C-ACT-G------AGTAAA-AA-TA-----------------TAAAT-TTA------CAAGAA---AACTTCATGA-CA----------T-G-AAATAGATTC--AA-GT-------TTA--TTAAAAT----CATGAAACC---CG-GAGATG--GA---GCGGGGTCA-T-CTTTGGG-----GATTA-A----A-TTT-T-T----A----A--TAATATAT--ACATGTAGGGA------------------AAAAA---AT----TCT-CAAGAA
gi|5 : --AAAAA-TAGGGTG-GTG--TCATT-TTAAAACATCT-----TATTCTCAAGAAAC-C-ACT-GGTGCTCAGAAAACGC-TG------------------AAATCTTACCTTGTTATG-GAATAGCTT-CTGAGTATATTCCCTGTTCG-ACTGAAATTC--AAGGTCATTCAGTTG--TC-AAATTGTCCATTAACTTATACGCGGGGTAATCG----TGGCGCCC-C-AGTGGGGCCATTGTCCATACCCTAGCTT-TAT----ACAATATTTGAT-TATTAG----TAGGGAAAATTCT------TT--TTAAAA---
gi|6 : ATGACCCC---CG-GGGGTA--CG---ATGTGGCCC-C-TTTAGGG-----GATCA-A----AGTTT-T------AC-CTA--TGAT-CAT--A----TCGGGAAAA-TCT------TT--TAAAA-----TCTTCTCAACAAGAACCACTGGG----CCAGAAAAGCTGAA-ATTTATATGAAAGCTTCCTTATATAGTGGA--GATTCAAGTTTGTTCAAATCATG-ACCCCCGGGGGTACGATGTGGCCCCTATAGAGGATCAAAGTTTTACCTATGATCATATA--GGGAAAATg
gi|7 : ATGAGCTGATTCTTGA-TCGCCTGTTGTC-GTGTCTTTCTGTCCGTCTGTCTGTCTGTCC--------GTC-----TGTCC--TTAA---CTTTCA-CATTTT-CGAC-TCTTCTCGTTCA--G--ACACT--AAC---TGGA-CG--AATTC--ACCAAGACTTATGTT------AAATA-TCATC-CT------GGGTGAAAGGGGACTTCAAAGCTTTGTTC--CATG-ACAGACCAGGCCCCAT-TC----AGGGGAGA-TAATCc
gi|8 : aCCCCCTCGGGTA--GAGTTTAGCCACAATAG-GAGCTCAAAGTTTCACAT-GCAAATATACATGTATAGAGAAAT--CTT--TAAAATATT-CT-TC-TCAAGAACTTTGAACTAGA------AT---ATATTTACC--TG--AATGCTTCCTTAGATG---GAG-T
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|9 ): TAGACCAGAAAAACTTAACCAGCATAGAAGTTTCATTATATATAAATTATTAAGGTTTGTTTGGATCATGATTTCCAGAGCTGGGGATGTTCTACAGGGTGGGGGGGGGGGTGTTAAAGTTTTAACTAGAAGTATAGGAAAATTCTT
Alignments
lowQualScore : 222 1 222222 11 1 1 33333333333 33333333 22222 11 111 111111 11111 111 555555555 11 11 1 11 33333333 1 11 1111 111 111 33333333333 1 1 33333333 1111 88888888888888888888888888888888888888888 11 1 44444444444444 11 1 3333333 11 1 3333 1111 11 1111 1111111 22222 1111 222222 11 3333333 2222222222 1111 1 2222 1 1 11 1 1 222 1 1 11 222 1 222 222222 11 222 2222 333333333333333 2222 1 1 1 11 1 1 2222 11 1 222 1 1 1 1 222 111 1 11 1 1 333333 1 11 22222 1 1 333333 44444444444 11 11 11 333 2222 11 1 1 1 33333 22 11 3333333333333 3333333 1 11 2222 1 11 11 1
lowQualScore : 222 3 666666 2 33 0 0 1 66666666666 0 22 66666666 55555 22 444 8 000000 99999 3 999 222222222 2 33 33 0 33 00000000 0 0 0 2 00 3 7777 5 8 88 111 1 0 99 8 99 4 4 4 888 4 66 4 5 66 3 777 1 00000000000 55 0 0 33333333 1 0000 99999999999999999999999999999999999999999 11 0 55555555555555 111 33 0 2222222 33 0 1111 7777 8 11 7777 3333333 00000 1 8 7777 8 555555 88 11 3 8 0000000 1 66 8 5555555555 4444 2 0 0 3 8888 6 3 0 2 5 88 5 5 000 5 1 5 1 1 88 1 000 1 5 111 999999 77 111 3333 222222222222222 2222 3 3 3 6 22 2 1 66 5 5 4444 1 88 5 1 111 1 5 1 5 5 5 111 2 1 777 1 5 6 88 3 6 7 7 2 1 3 888888 7 2 88 77777 3 3 888888 22222222222 88 88 88 444 2222 88 5 5 3 1 33333 7 00 88 4444444444444 7 7777777 3 44 6 8888 7 7 3 88 33 6 6 7 5
lowQualScore : ... . ...... . .. . . . ........... . .. ........ ..... .. ... . ...... ..... . ... ......... . .. .. . .. ........ . . . . .. . .... . . .. ... . . .. . .. . . . ... . .. . . .. . ... . ........... .. . . ........ . .... ......................................... .. . .............. ... .. . ....... .. . .... .... . .. .... ....... ..... . . .... . ...... .. .. . . ....... . .. . .......... .... . . . . .... . . . . . .. . . ... . . . . . .. . ... . . ... ...... .. ... .... ............... .... . . . . .. . . .. . . .... . .. . . ... . . . . . . ... . . ... . . . .. . . . . . . . ...... . . .. ..... . . ...... ........... .. .. .. ... .... .. . . . . ..... . .. .. ............. . ....... . .. . .... . . . .. .. . . . .
lowQualScore : 000 3 888888 5 55 0 0 0 22222222222 2 88 22222222 00000 55 000 0 666666 22222 2 000 333333333 5 88 22 0 88 00000000 2 2 8 5 22 2 0000 0 0 88 888 4 8 88 0 66 4 4 0 444 4 11 4 0 99 2 000 0 88888888888 88 0 0 22222222 0 2222 55555555555555555555555555555555555555555 88 0 22222222222222 555 88 0 5555555 88 0 2222 2222 0 00 8888 6666666 00000 4 0 0000 0 888888 66 00 2 0 0000000 0 44 0 6666666666 8888 5 2 0 2 3333 7 3 7 5 5 00 5 0 000 5 0 5 0 0 00 0 555 0 0 000 555555 55 000 5555 000000000000000 7777 3 3 3 7 00 5 0 55 5 0 0000 0 00 5 0 555 0 5 0 0 0 5 555 5 0 555 0 0 7 33 7 7 3 3 0 0 3 333333 3 0 33 77777 3 3 333333 33333333333 33 33 33 000 3333 55 5 0 3 0 33333 3 77 33 3333333333333 3 7777777 3 00 7 3333 3 3 3 33 33 7 7 3 0
consensus : NNNNNNNNNNNNNNNNNNNNNNNNNNNATTTTTA-G-TTCACCTGAA-CCGAAGGT-CAA-TGAGCT-ATTCT-GA-TCGCCTNTTGTC-GT-------CGTCCGTCTGTCCGTCCGTCC--------GTC-----TGTCTG-TTAA---TTTTTA-CATTTT-CGACTTCTTC---TTCAAGA--AACC------GC-TGGGCCA--AATTC-AACCAA-ACT--TGNC------ACACANTCATC-CTTG----GGGTG-AAGGGGA-TTCGAGG--TTGTTCAATATA-AAGGACCAGGCCCCCA-TC-AA-AGGGGAGA-TAATCACG-AAAATG-C--AAAA-ATAGGGTG-GTG--TCATT-T-AAAANATCT-----TCTTCTCAAAGAAC-C-ACT--GG-G-NCAGNAAA-GC-TG-----------------TAAAT-TTA------TACG-G---AGCTTNNTGA-TA----------TCG-ANGGAGATTC--AA-GT-------TTG--TT-AAAT----CATGACCCC---CG-GGGGTA--CG---ATGGGGCCC-C-ANTNGGG-----GATCA-A----AGTTT-T-T----AC-ATA--TGAT-TAT--A----TAGGGAAAA-TCT------TT--TAAAAA---ATCTTCTCT-CAAGAACCACTGGG----CCAGAAAAGCTGAA-ATTTATACGAAAGCTTCCGTATATGGTGGATCGATTCAAGTTTGTTCAAATCATGGACCCCCGGGGGTACGATGTGGCCCCNATAGAGGATCAAAGTTTTACNTATGATCATNTAAGGGGAAAATTTCANAAAACTGATCTNCTCTCAAGAACCACTGGGGCCAGAACAAAAGCTAGAACAGAAATTTTCGATATGGAAAGGACATTCCTGAGCAGTTAGTATTAGTGTGGGGGA--T-TC-AAGTTGT-TC-AAATCATGACCCNNGGGGTACGATGAGGNCNACAATAAGGGGACTCAGAGTAGTTTTNCATGATGATTATATATGGGGAAAATCTTTNAAAAATATCNTCTTCAAGANCCACTGGGCCAGGAAAGCTTTCCTGTATAAAGTCGAGNTNNAANTTTGTTCAACATCATGACCCCCAGGGGTA--ATGTCGGGCCACAATAAAGGGATCAAAGTTTNACAT-GCAAATA------TATAGGGAAATCCTTT--TAAAA---T-CT-TC-TCA------TTGAACCAGACG---GNTGG-ATATTTACC--TG--AAAGCTTCCT--GATG-T-GAG-TGAGATTAAAGTTTGTTTCAGATAA-TGCCNTCCCC-----TCTGAGGA-GTTGGG--TGGCG---G-CGCA-ATAACGGGA-T-----TAA-AGTTGCTACTACCT----GCTCTTCTTTAGTG-AAGCAG--TGTCTCAGGTGAGGCGATGTGGCCCATGGGCCTCTTGTTGTTTGTTA
Reference ( family-9 ) : NNNNNNNNNNNNNNNNNNNNNNNNNNNATTTTTA-G-TTCACCTGAA-CCGAAGGT-CAA-TGAGCT-ATTCT-GA-TCGCCTNTTGTC-GT-------CGTCCGTCTGTCCGTCCGTCC--------GTC-----TGTCTG-TTAA---TTTTTA-CATTTT-CGACTTCTTC---TTCAAGG--AACCC-----GC-TGGGCCA--AATTC-AACCAA-ACT--TGNC------ACACANTCATC-CTTG----GGGTG-AAGGGGA-TTCGAGG--TTGTTCAATATA-AAGGACCAGGCCCCCA-TC-AA-AGGGGAGA-TAATCACG-AAAATG-C--AAAA-ATAGGGTG-GTG--TCATT-T-AAAANATCT-----TCTTCTCAAAGAAC-C-ACT--GG-G-NCAGNAAA-GC-TG-----------------TAAAT-TTA------TACG-A---AGCTTNNTGA-TA----------TCG-ANGGAGATTC--AA-GT-------TTG--TT-AAAT----CATGACCCC---CG-GGGGTA--CG---ATGGGGCCC-C-ANTNGGG-----GATCA-A----AGTTT-T-T----AC-ATA--TGAT-TAT--A----TAGGGAAAA-TCT------TT--TAAAAA---ATCTTCTCT-CAAGAACCACTGGG----CCAGAAAAGCTGAA-ATTTATACGAAAGCTTCCGTATATGGTGGATCGATTCAAGTTTGTTCAAATCATGGACCCCCGGGGGTACGATGTGGCCCCNATAGAGGATCAAAGTTTTACNTATGATCATNTAAGGGGAAAATTTCANAAAACTGATCTNCTCTCAAGAACCACTGGGGCCAGAACAAAAGCTAGAACAGAAATTTTCGATATGGAAAGGACATTCCTGAGCAGTTAGTATTAGTGTGGGGGA--T-TC-AAGTTGT-TC-AAATCATGACCCNNGGGGTACGATGAGGNCNACAATAAGGGGACTCAGAGTAGTTTTNCATGATGATTATATATGGGGAAAATCTTTNAAAAATATCNTCTTCAAGANCCACTGGGCCAGGAAAGCTTTCCTGTATAAAGTCGAGNTNNAANTTTGTTCAACATCATGACCCCCAGGGGTA--ATGTCGGGCCACAATAAAGGGATCAAAGTTTNACAT-GCAAATA------TATAGGGAAATCCTTT--TAAAA---T-CT-TC-TCA------TTGAACCAGACG---GNTGG-ATATTTACC--TG--AAAGCTTCCT--GATG-T-GAG-TGAGATTAAAGTTTGTTTCAGATAA-TGCCNTCCCC-----TCTGAGGA-GTTGGG--TGGCG---G-CGCA-ATAACGGGA-T-----TAA-AGTTGCTACTACCT----GCTCTTCTTTAGTG-AAGCAG--TGTCTCAGGTGAGGCGATGTGGCCCATGGGCCTCTTGTTGTTTGTTA
gi|1 : ATTTTTA-GCTTCACCTGAA-CTGAAGGTTCAG-TGAGCT-ATTCT-GCCTCGCTTGCCGTC-GT-------CCTCCGTCTGTCCGTCCGTCC--------GTC-----TGTCTGGTTAA---TTTTCA-CATTTT-CGACTTCTTC---CTCAAGA--AACC------GC-TGGGCCA--AATTCCAACCAA-GCT--TGGC------ACACATTCATC-CTTG----GGGTG-AAGGGGA-TTCGGGG--TTGTTCAAT-TA-AAGGTCCAGGCCCCCAATC-AA-AGTGGAGA-TAATCAGG-AAAATG-A--AAAAAATAGGGTGCGTG--TCA-T-T-AAAAAATCT-----TCTTCTCAAAGAACGC-ACT--TG-G-CCAGAAAA-GC-TG-----------------CAAAT-TTA------TATG-----AGCTTTCTGA-TA----------TTG-GTGGAGATTC--AA-GT-------TTG--TT-AAAT----CATGACCCC---CG-GGTGTA--CG---ATGGGGCCC-CAAAAAGGG-----GATAA-A----AGTTT-T-T----AC-ATA--TGAT-TAT--A----TTGGG-AAA-TCT------TT--TAAAAA---ATCTTTTCT-CAAGAACCACTGGG----CCAGAAAAGCTGAA-ATTTATATGAAAGCTTCTGTATA-GGTGGATCAATTCAAG-TTGTTCAAATCATGGACCCC---GGGTACGATG-GGCCCCAATAGAGG-TCAAAGTTTTACATATGATTATTTAAGGGGAAAATTTCAAAAAA---ATCTTCTCTTAAGAACCACT-GGGCCAG---AAAAGCT------GAAATTTT--AT---GAAAG--C-TTCCTGA-----TA-TA-----GTGGGAGA--TGTC-AAGTTGT-TC-AAATCATGACCCACGGGGTACGATGAGGCCC-CAATAAAAGGA-TCAG----GTTTTCCATGAT--TTATATA-GGGGAAAATCTTTTAAA---ATCTTCTTCAAGAACCACT-GGCCAGGAAAGCTTTCCTG-ATAAAGTGAAGGTAAAAGTTTGTTCAA-ATTATGACCTCCAGGTGTACCATATGGGGCCACAATAAAGGGATCAATATTTTTCATAGCAAATA------TATAGGGAAATTCTTTTATAAAA---T-CTATC-TCA------TTGAACCAGACGCCCGCTGGAATATTTACCTTTGACAAAGCTTCCT--GATG-T-GAG-T--AATTAAAGTTTGTTTCAGATAATTGCCCCCCCCCCCCTTCTCAGG--GTTGAG--TGG-G---G-CACAGATAACGGGATT-----TAA-AGTTGCTAC-ACTT----GCTCTTCTTTAGTG-AAGCAG--TGTTTCAGGTGA-GCGATGTGGCCCATGGG-CTCTTGTTGTTT-TTA
gi|10 : taatatatgattttttaacagggtgtaTTTATAAAACTGATTTATTCTCAAGAACCACTGGGGCCAGAACAAAAGCTAGAACAAAAATTTTCGATATGGAAAGGACATTCCTGAGCAGTTAGTATTAGTGTGGAGGAATT-TCAAAGTTGTATCAAAATCAg
gi|11 : cATTTTTACA-TTGAACTGAGTCCAAAGAT-CAAATCAGCT-TTTCT-GA-TCGCCTTTTGTCTAT-------CGTCTGTCTGTCCGTCCGTCCTTCTGTTTGTCAGCCTTGTCTG-TTAA---TTGTTAGCATTTT----CTTCT
gi|12 : TTTTA-G-TTCACCTGAA-CCGAAGG--------------TTCT-GA-TAACCATTTGT---T-------CAT---------CGTCTGTCT--------GTC-----TGACTG-TTAATTTTTTTTA-CATTTT-CGATTTTTTC---TCCAA
gi|13 : ttatatatgcatatttacaGATAA-TGCCTTCCCA-----TC-GAGGAAGGTGGAATTGGCATGTG-CACACATA--GGGG-TGAATGTAAGAGTTGCTG-TACCTTAATGCTCTTCTTT-GTGAAAGCAGTATGCCTCAG
gi|14 : ----GGTTG-AAGGGAA-TTAAAAA--TTGTTCAAAATA-AAGGCCCAATTTCTCA-TTTAA-AAGGGAGA-CAATCAC--AAAATGGC--AAAA-ATAGGG
gi|15 : caaacttggtccatCTCGGGTGAG-CGATGTGACCCATGGGCCTCTTG
gi|16 : tttaaaattctttttgaaatcgattactgctgagtcagggccaagtttaGGACCAGGCCCCCA-TC-AA-AGGGGAGA-TAATCACG-AAAATG-C--AAAA-ATAGGGTG-GTG--TC
gi|17 : GGACCAGGCCCCT--TT-AA-AGGGGAGA-TAATCACG-AAAATG-C--AAAA-ATA-GGTG-GTG--T
gi|18 : CCCCCT-TC-AA-GGGGAAGA-TAATCACT-AAAATG-CAAAAAA-ATAGGGTG-GTG--T
gi|19 : GACCAGGCCCCCA-TC-AA-AGGGGAGA-TAATCACA-AAAATG-t
gi|2 : TAA---CTTTTA-CATTTTTCG--CTCTTC---T-CAGGGGGAATCCTTCGTGTGTGGGCCATAAATTC-AACCCA-ACT--TGGGGGTTAGACACAATCTTTACCTGTAAAGGGTA-CAAGGG--TTTGGGG--TAATACAATATATAAAGAC-AG---TCCA-TT-AA-AG---AGACTAATCAAGCAGAATG-C--AAAA-ATAGGG-G-GTGGTTCATTGG-AAAAAAACTGAATATC-TCT-ATAGAAC-CTACTGGGG-G-GCAGCAAA-GCATGGAGCTTTTAAGGCAGACTAGAT-TTA------TAC-------ACTTAGTAA-TA----------TCACAGGAAGATTTCAAA-GT-------TTGTTTT-CAATA---CATTACCT-------GTGATA--CGCACATGGGGTCCAC-AAATAGG-----ATTCA-A----AGTTTAT-TAAACAC-ATA--T-AT-AATA-A----TAGATACAA-TCTACAGTCTTAGTAAAAATATATCTTCTTT-TAAGA--TACTTGGTGTTCAAGTAAAG-TGAATAATTACACAA
gi|20 : GAGA-TGATTAAG-AAAATG-C--AAAA-ATAGGGTG-GTG--TCAtattctg
gi|3 : GA--T-TC-AAGTTGT-TT-CAAT-ATGACCCTGGGGATAAAATGAGGGCGACAATA-GGGGACTCAAAGTAGTTTTACATGATGATTATATATAAGGAAAATCTTTGAAAAATATCATC-TCAAGATCCACTGGGCCAGAAAAGCTTT-CTGTAT---GTCGAGCTTC-ATTTTGTTCAACATCATGA-CCCCAGGGGTA--ATGTCGGG-CACA--GAAGGGATCATA-TTTAACAA-TCAATTA------T-TAGGGAATTCTTTT--TAAAA---TACT-TCTTCA------TTGAAACAGACG---AGTGG-ATATTTACC--TG--AAAGCTTCCT--GATGATGGAGTTGAGAT--AAG-TTGTTT-AGATAA-TGCCATCCCC-----TCTGAGGA-GTTGGG--TGGCG---GCCGCA---AACGGGA-T-----TAA-AGTTGCTACTA-CT----GCTCTTC-TTAGTG-AAGCAG--TGTTTCAGGTGAGGCGATGTGG-CCATGGGCCTCT--TTGTTTGTTA
gi|4 : GACCA--ATTCC-AATCAC-ATT--TGTC------ATAAAGT-ATG-CTTG----GG-TG-AAGGGGA-TTCAAGG---TGAACAA-ATG-AAGAAACATGCCTCCT-TT-AAGAGGGGGG--------------GTG-C--ACAA-ATAGGGCG-G-G--TAATT-T-AAAACA----------TTCTC-AAGAAT-C-ACT--G------AGTAAA-AA-TA-----------------TAAAT-TTA------CAAGAA---AACTTCATGA-CA----------T-G-AAATAGATTC--AA-GT-------TTA--TTAAAAT----CATGAAACC---CG-GAGATG--GA---GCGGGGTCA-T-CTTTGGG-----GATTA-A----A-TTT-T-T----A----A--TAATATAT--ACATGTAGGGA------------------AAAAA---AT----TCT-CAAGAA
gi|5 : --AAAA-ATAGGGTG-GTG--TCATT-TTAAAACATCT-----TATTCTCAAGAAAC-C-ACT--GGTGCTCAGAAAACGC-TG------------------AAATCTTACCTTGTTATG-GAATAGCTT-CTGAGTATATTCCCTGTTCG-ACTGAAATTC--AAGGTCATTCAGTTG--TC-AAATTGTCCATTAACTTATACGCGGGGTAATCG----TGGCGCCC-C-AGTGGGGCCATTGTCCATACCCTAGCTT-TAT----ACAATATTTGAT-TATTAG----TAGGGAAAATTCT------TT--TTAAAA---
gi|6 : ATGACCCC---CG-GGGGTA--CG---ATGTGGCCC-C-TTTAGGG-----GATCA-A----AGTTT-T------AC-CTA--TGAT-CAT--A----TCGGGAAAA-TCT------TT--TAAAA-----TCTTCTCAACAAGAACCACTGGG----CCAGAAAAGCTGAA-ATTTATATGAAAGCTTCCTTATATAGTGGA--GATTCAAGTTTGTTCAAATCATG-ACCCCCGGGGGTACGATGTGGCCCCTATAGAGGATCAAAGTTTTACCTATGATCATATA--GGGAAAATg
gi|7 : AA-TGAGCTGATTCTTGA-TCGCCTGTTGTC-GTGTCTTTCTGTCCGTCTGTCTGTCTGTCC--------GTC-----TGTCC--TTAA---CTTTCA-CATTTT-CGAC-TCTTCTCGTTC-AGA--CACTA-----AC-TGGA-CG--AATTC--ACCAAGACTTATGTT------AAATA-TCATC-CT------GGGTGAAAGGGGACTTCAAAGCTTTGTTC--CATG-ACAGACCAGGCCCCAT-TC----AGGGGAGA-TAATCc
gi|8 : CCCCCTCGGGTA--GAGTTTAGCCACAATAG-GAGCTCAAAGTTTCACAT-GCAAATATACATGTATAGAGAAATC--TT--TAAAATATT-CT-TC-TCAAGAACTTTGAACTAGA------AT---ATATTTACC--TG--AATGCTTCCTTAGATG---GAG-T
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|9 ): TAGACCAGAAAAACTTAACCAGCATAGAAGTTTCATTATATATAAATTATTAAGGTTTGTTTGGATCATGATTTCCAGAGCTGGGGATGTTCTACAGGGTGGGGGGGGGGGTGTTAAAGTTTTAACTAGAAGTATAGGAAAATTCTT
Alignments
lowQualScore : 222 1 222222 11 1 1 33333333333 33333333 22222 11 111 111111 11111 222 55555555 11 11 1 11 33333333 1 11 1111 111 111 33333333333 1 1 33333333 1111 88888888888888888888888888888888888888888 11 1 44444444444444 11 1 3333333 11 1 3333 1111 11 1111 1111111 22222 1111 222222 11 3333333 2222222222 1111 1 2222 1 1 11 1 1 222 1 1 11 222 1 222 222222 11 222 2222 333333333333333 2222 1 1 1 11 1 1 2222 11 1 222 1 1 1 1 222 111 1 11 1 1 333333 1 11 22222 1 1 333333 44444444444 11 11 11 333 2222 11 1 1 1 33333 22 11 11111 4444 3333333 1 333333333 1 11 11 1
lowQualScore : 222 3 666666 2 33 0 0 1 66666666666 0 22 66666666 55555 22 444 8 000000 99999 3 333 00000000 2 33 33 0 33 00000000 0 0 0 2 00 3 7777 5 8 88 111 1 0 99 8 99 4 4 4 888 4 66 4 5 66 3 777 1 00000000000 55 0 0 33333333 1 0000 99999999999999999999999999999999999999999 11 0 55555555555555 111 33 0 2222222 33 0 1111 7777 8 11 7777 3333333 00000 1 8 7777 8 555555 88 11 3 8 0000000 1 66 8 5555555555 4444 2 0 0 3 8888 6 3 0 2 5 88 5 5 000 5 1 5 1 1 88 1 000 1 5 111 999999 77 111 3333 222222222222222 2222 3 3 3 6 22 2 1 66 5 5 4444 1 88 5 1 111 1 5 1 5 5 5 111 2 1 777 1 5 6 88 3 6 7 7 2 1 3 888888 7 2 88 77777 3 3 888888 22222222222 88 88 88 444 2222 88 5 5 3 1 33333 7 00 88 88888 4444 7 7777777 3 555555555 7 7 3 88 33 6 6 7 5
lowQualScore : ... . ...... . .. . . . ........... . .. ........ ..... .. ... . ...... ..... . ... ........ . .. .. . .. ........ . . . . .. . .... . . .. ... . . .. . .. . . . ... . .. . . .. . ... . ........... .. . . ........ . .... ......................................... .. . .............. ... .. . ....... .. . .... .... . .. .... ....... ..... . . .... . ...... .. .. . . ....... . .. . .......... .... . . . . .... . . . . . .. . . ... . . . . . .. . ... . . ... ...... .. ... .... ............... .... . . . . .. . . .. . . .... . .. . . ... . . . . . . ... . . ... . . . .. . . . . . . . ...... . . .. ..... . . ...... ........... .. .. .. ... .... .. . . . . ..... . .. .. ..... .... . ....... . ......... . . . .. .. . . . .
lowQualScore : 000 3 888888 5 55 0 0 0 22222222222 2 88 22222222 00000 55 000 0 666666 22222 2 333 77777777 5 88 22 0 88 00000000 2 2 8 5 22 2 0000 0 0 88 888 4 8 88 0 66 4 4 0 444 4 11 4 0 99 2 000 0 88888888888 88 0 0 22222222 0 2222 22222222222222222222222222222222222222222 88 0 22222222222222 555 88 0 5555555 88 0 2222 2222 0 00 8888 6666666 00000 4 0 0000 0 888888 66 00 2 0 0000000 0 44 0 6666666666 8888 5 2 0 2 3333 7 3 7 5 5 00 5 0 000 5 0 5 0 0 00 0 555 0 0 000 555555 55 000 5555 000000000000000 7777 3 3 3 7 00 5 0 55 5 0 0000 0 00 5 0 555 0 5 0 0 0 5 555 5 0 555 0 0 7 33 7 7 3 3 0 0 3 333333 3 0 33 77777 3 3 333333 33333333333 33 33 33 000 3333 55 5 0 3 0 33333 3 77 33 77777 0000 3 7777777 3 333333333 3 3 3 33 33 7 7 3 0
consensus : NNNNNNNNNNNNNNNNNNNNNNNNNNNATTTTTA-G-TTCACCTGAA-CCGAAGGT-CAA-TGAGCT-ATTCT-GA-TCGCCTNTTGTC-GT-------CGTCCGTCTGTCCGTCCGTCC--------GTC-----TGTCTG-TTAA---TTTTTA-CATTTT-CGACTTCTTC---TTCAAG---AAACC-----GC-TGGGCCA--AATTC-AACCAA-ACT--TGNC------ACACANTCATC-CTTG----GGGTG-AAGGGGA-TTCGAGG--TTGTTCAATATA-AAGGACCAGGCCCCCA-TC-AA-AGGGGAGA-TAATCACG-AAAATG-C--AAAA-ATAGGGTG-GTG--TCATT-T-AAAANATCT-----TCTTCTCAAAGAAC-C-ACT--GG-G-NCAGNAAA-GC-TG-----------------TAAAT-TTA------TATG-G---AGCTTNNTGA-TA----------TCG-ANGGAGATTC--AA-GT-------TTG--TT-AAAT----CATGACCCC---CG-GGGGTA--CG---ATGGGGCCC-C-ANTNGGG-----GATCA-A----AGTTT-T-T----AC-ATA--TGAT-TAT--A----TAGGGAAAA-TCT------TT--TAAAAA---ATCTTCTCT-CAAGAACCACTGGG----CCAGAAAAGCTGAA-ATTTATACGAAAGCTTCCGTATATGGTGGATCGATTCAAGTTTGTTCAAATCATGGACCCCCGGGGGTACGATGTGGCCCCNATAGAGGATCAAAGTTTTACNTATGATCATNTAAGGGGAAAATTTCANAAAACTGATCTNCTCTCAAGAACCACTGGGGCCAGAACAAAAGCTAGAACAGAAATTTTCGATATGGAAAGGACATTCCTGAGCAGTTAGTATTAGTGTGGGGGA--T-TC-AAGTTGT-TC-AAATCATGACCCNNGGGGTACGATGAGGNCNACAATAAGGGGACTCAGAGTAGTTTTNCATGATGATTATATATGGGGAAAATCTTTNAAAAATATCNTCTTCAAGANCCACTGGGCCAGGAAAGCTTTCCTGTATAAAGTCGAGNTNNAANTTTGTTCAACATCATGACCCCCAGGGGTA--ATGTCGGGCCACAATAAAGGGATCAAAGTTTNACAT-GCAAATA------TATAGGGAAATCCTTT--TAAAA---T-CT-TC-TCA------TTGAACCAGACG---GNTGG-ATATTTACC--TG--AAAGCTTCCT--GATG-T-GAG-TGAGATTAAAGTTTGTTTCAGATAA-TGCCNTCCCC-----TCTGAGG-AGTTGGG--TGGCG-G-CGCA---ATAACGGGA-T-----TAA-AGTTGCTACTACC----TGCTCTTCTTTAGTG-AAGCAG--TGTCTCAGGTGAGGCGATGTGGCCCATGGGCCTCTTGTTGTTTGTTA
Reference ( family-9 ) : NNNNNNNNNNNNNNNNNNNNNNNNNNNATTTTTA-G-TTCACCTGAA-CCGAAGGT-CAA-TGAGCT-ATTCT-GA-TCGCCTNTTGTC-GT-------CGTCCGTCTGTCCGTCCGTCC--------GTC-----TGTCTG-TTAA---TTTTTA-CATTTT-CGACTTCTTC---TTCAAG---AAACC-----GC-TGGGCCA--AATTC-AACCAA-ACT--TGNC------ACACANTCATC-CTTG----GGGTG-AAGGGGA-TTCGAGG--TTGTTCAATATA-AAGGACCAGGCCCCCA-TC-AA-AGGGGAGA-TAATCACG-AAAATG-C--AAAA-ATAGGGTG-GTG--TCATT-T-AAAANATCT-----TCTTCTCAAAGAAC-C-ACT--GG-G-NCAGNAAA-GC-TG-----------------TAAAT-TTA------TACG-G---AGCTTNNTGA-TA----------TCG-ANGGAGATTC--AA-GT-------TTG--TT-AAAT----CATGACCCC---CG-GGGGTA--CG---ATGGGGCCC-C-ANTNGGG-----GATCA-A----AGTTT-T-T----AC-ATA--TGAT-TAT--A----TAGGGAAAA-TCT------TT--TAAAAA---ATCTTCTCT-CAAGAACCACTGGG----CCAGAAAAGCTGAA-ATTTATACGAAAGCTTCCGTATATGGTGGATCGATTCAAGTTTGTTCAAATCATGGACCCCCGGGGGTACGATGTGGCCCCNATAGAGGATCAAAGTTTTACNTATGATCATNTAAGGGGAAAATTTCANAAAACTGATCTNCTCTCAAGAACCACTGGGGCCAGAACAAAAGCTAGAACAGAAATTTTCGATATGGAAAGGACATTCCTGAGCAGTTAGTATTAGTGTGGGGGA--T-TC-AAGTTGT-TC-AAATCATGACCCNNGGGGTACGATGAGGNCNACAATAAGGGGACTCAGAGTAGTTTTNCATGATGATTATATATGGGGAAAATCTTTNAAAAATATCNTCTTCAAGANCCACTGGGCCAGGAAAGCTTTCCTGTATAAAGTCGAGNTNNAANTTTGTTCAACATCATGACCCCCAGGGGTA--ATGTCGGGCCACAATAAAGGGATCAAAGTTTNACAT-GCAAATA------TATAGGGAAATCCTTT--TAAAA---T-CT-TC-TCA------TTGAACCAGACG---GNTGG-ATATTTACC--TG--AAAGCTTCCT--GATG-T-GAG-TGAGATTAAAGTTTGTTTCAGATAA-TGCCNTCCCC-----TCTGAGG-AGTTGGG--TGGCG-G-CGCA---ATAACGGGA-T-----TAA-AGTTGCTACTACC----TGCTCTTCTTTAGTG-AAGCAG--TGTCTCAGGTGAGGCGATGTGGCCCATGGGCCTCTTGTTGTTTGTTA
gi|1 : ATTTTTA-GCTTCACCTGAA-CTGAAGGTTCAG-TGAGCT-ATTCT-GCCTCGCTTGCCGTC-GT-------CCTCCGTCTGTCCGTCCGTCC--------GTC-----TGTCTGGTTAA---TTTTCA-CATTTT-CGACTTCTTC---CTCAAG---AAACC-----GC-TGGGCCA--AATTCCAACCAA-GCT--TGGC------ACACATTCATC-CTTG----GGGTG-AAGGGGA-TTCGGGG--TTGTTCAAT-TA-AAGGTCCAGGCCCCCAATC-AA-AGTGGAGA-TAATCAGG-AAAATG-A--AAAAAATAGGGTGCGTG--TCA-T-T-AAAAAATCT-----TCTTCTCAAAGAACGC-ACT--TG-G-CCAGAAAA-GC-TG-----------------CAAAT-TTA------TAT--G---AGCTTTCTGA-TA----------TTG-GTGGAGATTC--AA-GT-------TTG--TT-AAAT----CATGACCCC---CG-GGTGTA--CG---ATGGGGCCC-CAAAAAGGG-----GATAA-A----AGTTT-T-T----AC-ATA--TGAT-TAT--A----TTGGG-AAA-TCT------TT--TAAAAA---ATCTTTTCT-CAAGAACCACTGGG----CCAGAAAAGCTGAA-ATTTATATGAAAGCTTCTGTATA-GGTGGATCAATTCAAG-TTGTTCAAATCATGGACCCC---GGGTACGATG-GGCCCCAATAGAGG-TCAAAGTTTTACATATGATTATTTAAGGGGAAAATTTCAAAAAA---ATCTTCTCTTAAGAACCACT-GGGCCAG---AAAAGCT------GAAATTTT--AT---GAAAG--C-TTCCTGA-----TA-TA-----GTGGGAGA--TGTC-AAGTTGT-TC-AAATCATGACCCACGGGGTACGATGAGGCCC-CAATAAAAGGA-TCAG----GTTTTCCATGAT--TTATATA-GGGGAAAATCTTTTAAA---ATCTTCTTCAAGAACCACT-GGCCAGGAAAGCTTTCCTG-ATAAAGTGAAGGTAAAAGTTTGTTCAA-ATTATGACCTCCAGGTGTACCATATGGGGCCACAATAAAGGGATCAATATTTTTCATAGCAAATA------TATAGGGAAATTCTTTTATAAAA---T-CTATC-TCA------TTGAACCAGACGCCCGCTGGAATATTTACCTTTGACAAAGCTTCCT--GATG-T-GAG-T--AATTAAAGTTTGTTTCAGATAATTGCCCCCCCCCCCCTTCTCAGG--GTTGAG--TGG-G-G-CACAG--ATAACGGGATT-----TAA-AGTTGCTAC-ACT----TGCTCTTCTTTAGTG-AAGCAG--TGTTTCAGGTGA-GCGATGTGGCCCATGGG-CTCTTGTTGTTT-TTA
gi|10 : taatatatgattttttaacagggtgtaTTTATAAAACTGATTTATTCTCAAGAACCACTGGGGCCAGAACAAAAGCTAGAACAAAAATTTTCGATATGGAAAGGACATTCCTGAGCAGTTAGTATTAGTGTGGAGGAATT-TCAAAGTTGTATCAAAATCAg
gi|11 : cATTTTTACA-TTGAACTGAGTCCAAAGAT-CAAATCAGCT-TTTCT-GA-TCGCCTTTTGTCTAT-------CGTCTGTCTGTCCGTCCGTCCTTCTGTTTGTCAGCCTTGTCTG-TTAA---TTGTTAGCATTTT----CTTCT
gi|12 : TTTTA-G-TTCACCTGAA-CCGAAGG--------------TTCT-GA-TAACCATTTGT---T-------CAT---------CGTCTGTCT--------GTC-----TGACTG-TTAATTTTTTTTA-CATTTT-CGATTTTTTC---TCCAA
gi|13 : ttatatatgcatatttacaGATAA-TGCCTTCCCA-----TC-GAGGAAGGTGGAATTGGCATG-TGCACACATA--GGGG-TGAATGTAAGAGTTGCTG-TACCTTAATGCTCTTCTTT-GTGAAAGCAGTATGCCTCAG
gi|14 : ----GGTTG-AAGGGAA-TTAAAAA--TTGTTCAAAATA-AAGGCCCAATTTCTCA-TTTAA-AAGGGAGA-CAATCAC--AAAATGGC--AAAA-ATAGGG
gi|15 : caaacttggtccatCTCGGGTGAG-CGATGTGACCCATGGGCCTCTTG
gi|16 : tttaaaattctttttgaaatcgattactgctgagtcagggccaagtttaGGACCAGGCCCCCA-TC-AA-AGGGGAGA-TAATCACG-AAAATG-C--AAAA-ATAGGGTG-GTG--TC
gi|17 : GGACCAGGCCCCT--TT-AA-AGGGGAGA-TAATCACG-AAAATG-C--AAAA-ATA-GGTG-GTG--T
gi|18 : CCCCCT-TC-AA-GGGGAAGA-TAATCACT-AAAATG-CAAAAAA-ATAGGGTG-GTG--T
gi|19 : GACCAGGCCCCCA-TC-AA-AGGGGAGA-TAATCACA-AAAATG-t
gi|2 : TAA---CTTTTA-CATTTTTCG--CTCTTC---T-CAGGGGGAATCCTTCGTGTGTGGGCCATAAATTC-AACCCA-ACT--TGGGGGTTAGACACAATCTTTACCTGTAAAGGGTA-CAAGGG--TTTGGGG--TAATACAATATATAAAGAC-AG---TCCA-TT-AA-AG---AGACTAATCAAGCAGAATG-C--AAAA-ATAGGG-G-GTGGTTCATTGG-AAAAAAACTGAATATC-TCT-ATAGAAC-CTACTGGGG-G-GCAGCAAA-GCATGGAGCTTTTAAGGCAGACTAGAT-TTA------TAC-------ACTTAGTAA-TA----------TCACAGGAAGATTTCAAA-GT-------TTGTTTT-CAATA---CATTACCT-------GTGATA--CGCACATGGGGTCCAC-AAATAGG-----ATTCA-A----AGTTTAT-TAAACAC-ATA--T-AT-AATA-A----TAGATACAA-TCTACAGTCTTAGTAAAAATATATCTTCTTT-TAAGA--TACTTGGTGTTCAAGTAAAG-TGAATAATTACACAA
gi|20 : GAGA-TGATTAAG-AAAATG-C--AAAA-ATAGGGTG-GTG--TCAtattctg
gi|3 : GA--T-TC-AAGTTGT-TT-CAAT-ATGACCCTGGGGATAAAATGAGGGCGACAATA-GGGGACTCAAAGTAGTTTTACATGATGATTATATATAAGGAAAATCTTTGAAAAATATCATC-TCAAGATCCACTGGGCCAGAAAAGCTTT-CTGTAT---GTCGAGCTTC-ATTTTGTTCAACATCATGA-CCCCAGGGGTA--ATGTCGGG-CACA--GAAGGGATCATA-TTTAACAA-TCAATTA------T-TAGGGAATTCTTTT--TAAAA---TACT-TCTTCA------TTGAAACAGACG---AGTGG-ATATTTACC--TG--AAAGCTTCCT--GATGATGGAGTTGAGAT--AAG-TTGTTT-AGATAA-TGCCATCCCC-----TCTGAGG-AGTTGGG--TGGCG-GCCGCA-----AACGGGA-T-----TAA-AGTTGCTACTA-C----TGCTCTTC-TTAGTG-AAGCAG--TGTTTCAGGTGAGGCGATGTGG-CCATGGGCCTCT--TTGTTTGTTA
gi|4 : GACCA--ATTCC-AATCAC-ATT--TGTC------ATAAAGT-ATG-CTTG----GG-TG-AAGGGGA-TTCAAGG---TGAACAA-ATG-AAGAAACATGCCTCCT-TT-AAGAGGGGGG--------------GTG-C--ACAA-ATAGGGCG-G-G--TAATT-T-AAAACA----------TTCTC-AAGAAT-C-ACT--G------AGTAAA-AA-TA-----------------TAAAT-TTA------CAAGAA---AACTTCATGA-CA----------T-G-AAATAGATTC--AA-GT-------TTA--TTAAAAT----CATGAAACC---CG-GAGATG--GA---GCGGGGTCA-T-CTTTGGG-----GATTA-A----A-TTT-T-T----A----A--TAATATAT--ACATGTAGGGA------------------AAAAA---AT----TCT-CAAGAA
gi|5 : --AAAA-ATAGGGTG-GTG--TCATT-TTAAAACATCT-----TATTCTCAAGAAAC-C-ACT--GGTGCTCAGAAAACGC-TG------------------AAATCTTACCTTGTTATG-GAATAGCTT-CTGAGTATATTCCCTGTTCG-ACTGAAATTC--AAGGTCATTCAGTTG--TC-AAATTGTCCATTAACTTATACGCGGGGTAATCG----TGGCGCCC-C-AGTGGGGCCATTGTCCATACCCTAGCTT-TAT----ACAATATTTGAT-TATTAG----TAGGGAAAATTCT------TT--TTAAAA---
gi|6 : ATGACCCC---CG-GGGGTA--CG---ATGTGGCCC-C-TTTAGGG-----GATCA-A----AGTTT-T------AC-CTA--TGAT-CAT--A----TCGGGAAAA-TCT------TT--TAAAA-----TCTTCTCAACAAGAACCACTGGG----CCAGAAAAGCTGAA-ATTTATATGAAAGCTTCCTTATATAGTGGA--GATTCAAGTTTGTTCAAATCATG-ACCCCCGGGGGTACGATGTGGCCCCTATAGAGGATCAAAGTTTTACCTATGATCATATA--GGGAAAATg
gi|7 : AA-TGAGCTGATTCTTGA-TCGCCTGTTGTC-GTGTCTTTCTGTCCGTCTGTCTGTCTGTCC--------GTC-----TGTCC--TTAA---CTTTCA-CATTTT-CGAC-TCTTCTCGTTC-AG---ACACTA----AC-TGGA-CG--AATTC--ACCAAGACTTATGTT------AAATA-TCATC-CT------GGGTGAAAGGGGACTTCAAAGCTTTGTTC--CATG-ACAGACCAGGCCCCAT-TC----AGGGGAGA-TAATCc
gi|8 : CCCCCTCGGGTA--GAGTTTAGCCACAATAG-GAGCTCAAAGTTTCACAT-GCAAATATACATGTATAGAGAAATC--TT--TAAAATATT-CT-TC-TCAAGAACTTTGAACTAGA------AT---ATATTTACC--TG--AATGCTTCCTTAGATG---GAG-T
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|9 ): TAGACCAGAAAAACTTAACCAGCATAGAAGTTTCATTATATATAAATTATTAAGGTTTGTTTGGATCATGATTTCCAGAGCTGGGGATGTTCTACAGGGTGGGGGGGGGGGTGTTAAAGTTTTAACTAGAAGTATAGGAAAATTCTT
Alignments
lowQualScore : 222 1 222222 11 1 1 33333333333 33333333 22222 11 111 111111 11111 222 55555555 11 11 1 11 33333333 1 11 1111 111 111 33333333333 1 1 33333333 1111 88888888888888888888888888888888888888888 11 1 44444444444444 11 1 3333333 11 1 3333 1111 11 1111 1111111 22222 1111 222222 11 3333333 2222222222 1111 1 2222 1 1 11 1 1 222 1 1 11 222 1 222 222222 11 222 2222 333333333333333 2222 1 1 1 11 1 1 2222 11 1 222 1 1 1 1 222 111 1 11 1 1 333333 1 11 22222 1 1 333333 44444444444 11 11 11 333 2222 11 1 1 1 33333 22 11 11111 4444 3333333 1 333333333 1 11 11 1
lowQualScore : 222 3 666666 2 33 0 0 1 66666666666 0 22 66666666 55555 22 444 8 000000 99999 3 333 00000000 2 33 33 0 33 00000000 0 0 0 2 00 3 7777 5 8 88 111 1 0 99 8 99 4 4 4 888 4 66 4 5 66 3 777 1 00000000000 55 0 0 33333333 1 0000 66666666666666666666666666666666666666666 11 0 55555555555555 111 33 0 2222222 33 0 1111 7777 8 11 7777 3333333 00000 1 8 7777 8 555555 88 11 3 8 0000000 1 66 8 5555555555 4444 2 0 0 3 8888 6 3 0 2 5 88 5 5 000 5 1 5 1 1 88 1 000 1 5 111 999999 77 111 3333 222222222222222 2222 3 3 3 6 22 2 1 66 5 5 4444 1 88 5 1 111 1 5 1 5 5 5 111 2 1 777 1 5 6 88 3 6 7 7 2 1 3 888888 7 2 88 77777 3 3 888888 22222222222 88 88 88 444 2222 88 5 5 3 1 33333 7 00 88 88888 4444 7 7777777 3 555555555 7 7 3 88 33 6 6 7 5
lowQualScore : ... . ...... . .. . . . ........... . .. ........ ..... .. ... . ...... ..... . ... ........ . .. .. . .. ........ . . . . .. . .... . . .. ... . . .. . .. . . . ... . .. . . .. . ... . ........... .. . . ........ . .... ......................................... .. . .............. ... .. . ....... .. . .... .... . .. .... ....... ..... . . .... . ...... .. .. . . ....... . .. . .......... .... . . . . .... . . . . . .. . . ... . . . . . .. . ... . . ... ...... .. ... .... ............... .... . . . . .. . . .. . . .... . .. . . ... . . . . . . ... . . ... . . . .. . . . . . . . ...... . . .. ..... . . ...... ........... .. .. .. ... .... .. . . . . ..... . .. .. ..... .... . ....... . ......... . . . .. .. . . . .
lowQualScore : 000 3 888888 5 55 0 0 0 22222222222 2 88 22222222 00000 55 000 0 666666 22222 2 333 77777777 5 88 22 0 88 00000000 2 2 8 5 22 2 0000 0 0 88 888 4 8 88 0 66 4 4 0 444 4 11 4 0 99 2 000 0 88888888888 88 0 0 22222222 0 2222 22222222222222222222222222222222222222222 88 0 22222222222222 555 88 0 5555555 88 0 2222 2222 0 00 8888 6666666 00000 4 0 0000 0 888888 66 00 2 0 0000000 0 44 0 6666666666 8888 5 2 0 2 3333 7 3 7 5 5 00 5 0 000 5 0 5 0 0 00 0 555 0 0 000 555555 55 000 5555 000000000000000 7777 3 3 3 7 00 5 0 55 5 0 0000 0 00 5 0 555 0 5 0 0 0 5 555 5 0 555 0 0 7 33 7 7 3 3 0 0 3 333333 3 0 33 77777 3 3 333333 33333333333 33 33 33 000 3333 55 5 0 3 0 33333 3 77 33 77777 0000 3 7777777 3 333333333 3 3 3 33 33 7 7 3 0
consensus : NNNNNNNNNNNNNNNNNNNNNNNNNNNATTTTTA-G-TTCACCTGAA-CCGAAGGT-CAA-TGAGCT-ATTCT-GA-TCGCCTNTTGTC-GT-------CGTCCGTCTGTCCGTCCGTCC--------GTC-----TGTCTG-TTAA---TTTTTA-CATTTT-CGACTTCTTC---TTCAAG---AAACC-----GC-TGGGCCA--AATTC-AACCAA-ACT--TGNC------ACACANTCATC-CTTG----GGGTG-AAGGGGA-TTCGAGG--TTGTTCAATATA-AAGGACCAGGCCCCCA-TC-AA-AGGGGAGA-TAATCACG-AAAATG-C--AAAA-ATAGGGTG-GTG--TCATT-T-AAAANATCT-----TCTTCTCAAAGAAC-C-ACT--GG-G-NCAGNAAA-GC-TG-----------------TAAAT-TTA------TATG-G---AGCTTNNTGA-TA----------TCG-ANGGAGATTC--AA-GT-------TTG--TT-AAAT----CATGACCCC---CG-GGGGTA--CG---ATGGGGCCC-C-ANTNGGG-----GATCA-A----AGTTT-T-T----AC-ATA--TGAT-TAT--A----TAGGGAAAA-TCT------TT--TAAAAA---ATCTTCTCT-CAAGAACCACTGGG----CCAGAAAAGCTGAA-ATTTATACGAAAGCTTCCGTATATGGTGGATCGATTCAAGTTTGTTCAAATCATGGACCCCCGGGGGTACGATGTGGCCCCNATAGAGGATCAAAGTTTTACNTATGATCATNTAAGGGGAAAATTTCANAAAACTGATCTNCTCTCAAGAACCACTGGGGCCAGAACAAAAGCTAGAACAGAAATTTTCGATATGGAAAGGACATTCCTGAGCAGTTAGTATTAGTGTGGGGGA--T-TC-AAGTTGT-TC-AAATCATGACCCNNGGGGTACGATGAGGNCNACAATAAGGGGACTCAGAGTAGTTTTNCATGATGATTATATATGGGGAAAATCTTTNAAAAATATCNTCTTCAAGANCCACTGGGCCAGGAAAGCTTTCCTGTATAAAGTCGAGNTNNAANTTTGTTCAACATCATGACCCCCAGGGGTA--ATGTCGGGCCACAATAAAGGGATCAAAGTTTNACAT-GCAAATA------TATAGGGAAATCCTTT--TAAAA---T-CT-TC-TCA------TTGAACCAGACG---GNTGG-ATATTTACC--TG--AAAGCTTCCT--GATG-T-GAG-TGAGATTAAAGTTTGTTTCAGATAA-TGCCNTCCCC-----TCTGAGG-AGTTGGG--TGGCG-G-CGCA---ATAACGGGA-T-----TAA-AGTTGCTACTACC----TGCTCTTCTTTAGTG-AAGCAG--TGTCTCAGGTGAGGCGATGTGGCCCATGGGCCTCTTGTTGTTTGTTA
Reference ( family-9 ) : NNNNNNNNNNNNNNNNNNNNNNNNNNNATTTTTA-G-TTCACCTGAA-CCGAAGGT-CAA-TGAGCT-ATTCT-GA-TCGCCTNTTGTC-GT-------CGTCCGTCTGTCCGTCCGTCC--------GTC-----TGTCTG-TTAA---TTTTTA-CATTTT-CGACTTCTTC---TTCAAG---AAACC-----GC-TGGGCCA--AATTC-AACCAA-ACT--TGNC------ACACANTCATC-CTTG----GGGTG-AAGGGGA-TTCGAGG--TTGTTCAATATA-AAGGACCAGGCCCCCA-TC-AA-AGGGGAGA-TAATCACG-AAAATG-C--AAAA-ATAGGGTG-GTG--TCATT-T-AAAANATCT-----TCTTCTCAAAGAAC-C-ACT--GG-G-NCAGNAAA-GC-TG-----------------TAAAT-TTA------TATG-G---AGCTTNNTGA-TA----------TCG-ANGGAGATTC--AA-GT-------TTG--TT-AAAT----CATGACCCC---CG-GGGGTA--CG---ATGGGGCCC-C-ANTNGGG-----GATCA-A----AGTTT-T-T----AC-ATA--TGAT-TAT--A----TAGGGAAAA-TCT------TT--TAAAAA---ATCTTCTCT-CAAGAACCACTGGG----CCAGAAAAGCTGAA-ATTTATACGAAAGCTTCCGTATATGGTGGATCGATTCAAGTTTGTTCAAATCATGGACCCCCGGGGGTACGATGTGGCCCCNATAGAGGATCAAAGTTTTACNTATGATCATNTAAGGGGAAAATTTCANAAAACTGATCTNCTCTCAAGAACCACTGGGGCCAGAACAAAAGCTAGAACAGAAATTTTCGATATGGAAAGGACATTCCTGAGCAGTTAGTATTAGTGTGGGGGA--T-TC-AAGTTGT-TC-AAATCATGACCCNNGGGGTACGATGAGGNCNACAATAAGGGGACTCAGAGTAGTTTTNCATGATGATTATATATGGGGAAAATCTTTNAAAAATATCNTCTTCAAGANCCACTGGGCCAGGAAAGCTTTCCTGTATAAAGTCGAGNTNNAANTTTGTTCAACATCATGACCCCCAGGGGTA--ATGTCGGGCCACAATAAAGGGATCAAAGTTTNACAT-GCAAATA------TATAGGGAAATCCTTT--TAAAA---T-CT-TC-TCA------TTGAACCAGACG---GNTGG-ATATTTACC--TG--AAAGCTTCCT--GATG-T-GAG-TGAGATTAAAGTTTGTTTCAGATAA-TGCCNTCCCC-----TCTGAGG-AGTTGGG--TGGCG-G-CGCA---ATAACGGGA-T-----TAA-AGTTGCTACTACC----TGCTCTTCTTTAGTG-AAGCAG--TGTCTCAGGTGAGGCGATGTGGCCCATGGGCCTCTTGTTGTTTGTTA
gi|1 : ATTTTTA-GCTTCACCTGAA-CTGAAGGTTCAG-TGAGCT-ATTCT-GCCTCGCTTGCCGTC-GT-------CCTCCGTCTGTCCGTCCGTCC--------GTC-----TGTCTGGTTAA---TTTTCA-CATTTT-CGACTTCTTC---CTCAAG---AAACC-----GC-TGGGCCA--AATTCCAACCAA-GCT--TGGC------ACACATTCATC-CTTG----GGGTG-AAGGGGA-TTCGGGG--TTGTTCAAT-TA-AAGGTCCAGGCCCCCAATC-AA-AGTGGAGA-TAATCAGG-AAAATG-A--AAAAAATAGGGTGCGTG--TCA-T-T-AAAAAATCT-----TCTTCTCAAAGAACGC-ACT--TG-G-CCAGAAAA-GC-TG-----------------CAAAT-TTA------TAT--G---AGCTTTCTGA-TA----------TTG-GTGGAGATTC--AA-GT-------TTG--TT-AAAT----CATGACCCC---CG-GGTGTA--CG---ATGGGGCCC-CAAAAAGGG-----GATAA-A----AGTTT-T-T----AC-ATA--TGAT-TAT--A----TTGGG-AAA-TCT------TT--TAAAAA---ATCTTTTCT-CAAGAACCACTGGG----CCAGAAAAGCTGAA-ATTTATATGAAAGCTTCTGTATA-GGTGGATCAATTCAAG-TTGTTCAAATCATGGACCCC---GGGTACGATG-GGCCCCAATAGAGG-TCAAAGTTTTACATATGATTATTTAAGGGGAAAATTTCAAAAAA---ATCTTCTCTTAAGAACCACT-GGGCCAG---AAAAGCT------GAAATTTT--AT---GAAAG--C-TTCCTGA-----TA-TA-----GTGGGAGA--TGTC-AAGTTGT-TC-AAATCATGACCCACGGGGTACGATGAGGCCC-CAATAAAAGGA-TCAG----GTTTTCCATGAT--TTATATA-GGGGAAAATCTTTTAAA---ATCTTCTTCAAGAACCACT-GGCCAGGAAAGCTTTCCTG-ATAAAGTGAAGGTAAAAGTTTGTTCAA-ATTATGACCTCCAGGTGTACCATATGGGGCCACAATAAAGGGATCAATATTTTTCATAGCAAATA------TATAGGGAAATTCTTTTATAAAA---T-CTATC-TCA------TTGAACCAGACGCCCGCTGGAATATTTACCTTTGACAAAGCTTCCT--GATG-T-GAG-T--AATTAAAGTTTGTTTCAGATAATTGCCCCCCCCCCCCTTCTCAGG--GTTGAG--TGG-G-G-CACAG--ATAACGGGATT-----TAA-AGTTGCTAC-ACT----TGCTCTTCTTTAGTG-AAGCAG--TGTTTCAGGTGA-GCGATGTGGCCCATGGG-CTCTTGTTGTTT-TTA
gi|10 : taatatatgattttttaacagggtgtaTTTATAAAACTGATTTATTCTCAAGAACCACTGGGGCCAGAACAAAAGCTAGAACAAAAATTTTCGATATGGAAAGGACATTCCTGAGCAGTTAGTATTAGTGTGGAGGAATT-TCAAAGTTGTATCAAAATCAg
gi|11 : cATTTTTACA-TTGAACTGAGTCCAAAGAT-CAAATCAGCT-TTTCT-GA-TCGCCTTTTGTCTAT-------CGTCTGTCTGTCCGTCCGTCCTTCTGTTTGTCAGCCTTGTCTG-TTAA---TTGTTAGCATTTT----CTTCT
gi|12 : TTTTA-G-TTCACCTGAA-CCGAAGG--------------TTCT-GA-TAACCATTTGT---T-------CAT---------CGTCTGTCT--------GTC-----TGACTG-TTAATTTTTTTTA-CATTTT-CGATTTTTTC---TCCAA
gi|13 : ttatatatgcatatttacaGATAA-TGCCTTCCCA-----TC-GAGGAAGGTGGAATTGGCATG-TGCACACATA--GGGG-TGAATGTAAGAGTTGCTG-TACCTTAATGCTCTTCTTT-GTGAAAGCAGTATGCCTCAG
gi|14 : ----GGTTG-AAGGGAA-TTAAAAA--TTGTTCAAAATA-AAGGCCCAATTTCTCA-TTTAA-AAGGGAGA-CAATCAC--AAAATGGC--AAAA-ATAGGG
gi|15 : caaacttggtccatCTCGGGTGAG-CGATGTGACCCATGGGCCTCTTG
gi|16 : tttaaaattctttttgaaatcgattactgctgagtcagggccaagtttaGGACCAGGCCCCCA-TC-AA-AGGGGAGA-TAATCACG-AAAATG-C--AAAA-ATAGGGTG-GTG--TC
gi|17 : GGACCAGGCCCCT--TT-AA-AGGGGAGA-TAATCACG-AAAATG-C--AAAA-ATA-GGTG-GTG--T
gi|18 : CCCCCT-TC-AA-GGGGAAGA-TAATCACT-AAAATG-CAAAAAA-ATAGGGTG-GTG--T
gi|19 : GACCAGGCCCCCA-TC-AA-AGGGGAGA-TAATCACA-AAAATG-t
gi|2 : TAA---CTTTTA-CATTTTTCG--CTCTTC---T-CAGGGGGAATCCTTCGTGTGTGGGCCATAAATTC-AACCCA-ACT--TGGGGGTTAGACACAATCTTTACCTGTAAAGGGTA-CAAGGG--TTTGGGG--TAATACAATATATAAAGAC-AG---TCCA-TT-AA-AG---AGACTAATCAAGCAGAATG-C--AAAA-ATAGGG-G-GTGGTTCATTGG-AAAAAAACTGAATATC-TCT-ATAGAAC-CTACTGGGG-G-GCAGCAAA-GCATGGAGCTTTTAAGGCAGACTAGAT-TTA------TAC-------ACTTAGTAA-TA----------TCACAGGAAGATTTCAAA-GT-------TTGTTTT-CAATA---CATTACCT-------GTGATA--CGCACATGGGGTCCAC-AAATAGG-----ATTCA-A----AGTTTAT-TAAACAC-ATA--T-AT-AATA-A----TAGATACAA-TCTACAGTCTTAGTAAAAATATATCTTCTTT-TAAGA--TACTTGGTGTTCAAGTAAAG-TGAATAATTACACAA
gi|20 : GAGA-TGATTAAG-AAAATG-C--AAAA-ATAGGGTG-GTG--TCAtattctg
gi|3 : GA--T-TC-AAGTTGT-TT-CAAT-ATGACCCTGGGGATAAAATGAGGGCGACAATA-GGGGACTCAAAGTAGTTTTACATGATGATTATATATAAGGAAAATCTTTGAAAAATATCATC-TCAAGATCCACTGGGCCAGAAAAGCTTT-CTGTAT---GTCGAGCTTC-ATTTTGTTCAACATCATGA-CCCCAGGGGTA--ATGTCGGG-CACA--GAAGGGATCATA-TTTAACAA-TCAATTA------T-TAGGGAATTCTTTT--TAAAA---TACT-TCTTCA------TTGAAACAGACG---AGTGG-ATATTTACC--TG--AAAGCTTCCT--GATGATGGAGTTGAGAT--AAG-TTGTTT-AGATAA-TGCCATCCCC-----TCTGAGG-AGTTGGG--TGGCG-GCCGCA-----AACGGGA-T-----TAA-AGTTGCTACTA-C----TGCTCTTC-TTAGTG-AAGCAG--TGTTTCAGGTGAGGCGATGTGG-CCATGGGCCTCT--TTGTTTGTTA
gi|4 : GACCA--ATTCC-AATCAC-ATT--TGTC------ATAAAGT-ATG-CTTG----GG-TG-AAGGGGA-TTCAAGG---TGAACAA-ATG-AAGAAACATGCCTCCT-TT-AAGAGGGGGG--------------GTG-C--ACAA-ATAGGGCG-G-G--TAATT-T-AAAACA----------TTCTC-AAGAAT-C-ACT--G------AGTAAA-AA-TA-----------------TAAAT-TTA------CAAGAA---AACTTCATGA-CA----------T-G-AAATAGATTC--AA-GT-------TTA--TTAAAAT----CATGAAACC---CG-GAGATG--GA---GCGGGGTCA-T-CTTTGGG-----GATTA-A----A-TTT-T-T----A----A--TAATATAT--ACATGTAGGGA------------------AAAAA---AT----TCT-CAAGAA
gi|5 : --AAAA-ATAGGGTG-GTG--TCATT-TTAAAACATCT-----TATTCTCAAGAAAC-C-ACT--GGTGCTCAGAAAACGC-TG------------------AAATCTTACCTTGTTATG-GAATAGCTT-CTGAGTATATTCCCTGTTCG-ACTGAAATTC--AAGGTCATTCAGTTG--TC-AAATTGTCCATTAACTTATACGCGGGGTAATCG----TGGCGCCC-C-AGTGGGGCCATTGTCCATACCCTAGCTT-TAT----ACAATATTTGAT-TATTAG----TAGGGAAAATTCT------TT--TTAAAA---
gi|6 : ATGACCCC---CG-GGGGTA--CG---ATGTGGCCC-C-TTTAGGG-----GATCA-A----AGTTT-T------AC-CTA--TGAT-CAT--A----TCGGGAAAA-TCT------TT--TAAAA-----TCTTCTCAACAAGAACCACTGGG----CCAGAAAAGCTGAA-ATTTATATGAAAGCTTCCTTATATAGTGGA--GATTCAAGTTTGTTCAAATCATG-ACCCCCGGGGGTACGATGTGGCCCCTATAGAGGATCAAAGTTTTACCTATGATCATATA--GGGAAAATg
gi|7 : AA-TGAGCTGATTCTTGA-TCGCCTGTTGTC-GTGTCTTTCTGTCCGTCTGTCTGTCTGTCC--------GTC-----TGTCC--TTAA---CTTTCA-CATTTT-CGAC-TCTTCTCGTTC-AG---ACACTA----AC-TGGA-CG--AATTC--ACCAAGACTTATGTT------AAATA-TCATC-CT------GGGTGAAAGGGGACTTCAAAGCTTTGTTC--CATG-ACAGACCAGGCCCCAT-TC----AGGGGAGA-TAATCc
gi|8 : CCCCCTCGGGTA--GAGTTTAGCCACAATAG-GAGCTCAAAGTTTCACAT-GCAAATATACATGTATAGAGAAATC--TT--TAAAATATT-CT-TC-TCAAGAACTTTGAACTAGA------AT---ATATTTACC--TG--AATGCTTCCTTAGATG---GAG-T
blockSeqs : CA T TCAAA C GA T . T CGTGTCTTTC CT TTCTGTTT AGCCT G TTT G CGATT TCGTT A GGG TTCGTGTG C TA A G TA GGGGTTAG A C TA T TAAA T A AC CTT T AA T A T G C AGC G AA . . GT T GG A ACTGAATATC CA . T GGGGGG C GCA GAGCTTTTAAGGCAGACTAGATTTATAC AG G TATTCCCTGTTCG GGA CA G CATTCAG TT A TGTC TATA C AT CACA ACAAAT CCATT T T CCCT A TAAAC AA TT A A ACATG A AC T ACAGTCTTAG ATAT C A A TGTT C T T T . T . CGG T T A C A . T CTG A G AAC AGAACA CG ATG GACA GCAGTTAGTATTAGT ATT A A A C TG A G GA . C AGTA A GA T G AAT A . T G . T . C C TC T C C . C C A A G A . TACATG A T . TATT . T AGAACT CGAGTGG . . TA ATG TTGA . . . . T . T AA AT CATG CACA A TGAATG G TACCTTAA T A A TA GG C C T G
blockSeqs : G . . G T . . T CTAT CC . . G . . TCGC TC A . AAC C . A . . TC G C G T . G . A T A TA . A . . . CG . . . . . T TT C TCTTAT A . . GGTGCT T CGC AAATCTTACCTTGTTATGGAAT CA . TCAC AAT . . . . . A C . . G TCTTT . A . . . AT A . G . TAG A AA . TT A C . A . . . T . . . . . . T . . . . C . . . . . TA . . . AT . . . . . A . . A . CGGC . . T . CTAC . . . . G . C .
blockSeqs : . . . . G T . . . . . . CGAC T . . . . . . TT . . C . . G . A T A CA . T . . . CG . . . . . T T C T C . . G A AA TAAATTTACAAGAA C . TG CTG . . . . . . C . . A CAGTG . T . . . T C . G . AA A AA . TT A . . .
blockSeqs : . . CT . . . . . T A . A . . . CT . . . . . . . . . CTTTA . A . . . . . . . . A C A . . .
blockSeqs : A . . . CA . . . . .
blockSeqs : T . . . AG . . . . .
blockSeqs : T . . . C . . . . .
blockSeqs : . . . . . . . .
blockSeqs : .
blockSeqCons : CGT*** NA N* CNTTN** T***** AG***** AA
originalCons : NNNNNNNNNNNNNNNNNNNNNNNNNNNATTTTTA-G-TTCACCTGAA-CCGAAGGT-CAA-TGAGCT-ATTCT-GA-TCGCCTNTTGTC-GT-------CGTCCGTCTGTCCGTCCGTCC--------GTC-----TGTCTG-TTAA---TTTTTA-CATTTT-CGACTTCTTC---TTCAAG---AAACC-----GC-TGGGCCA--AATTC-AACCAA-ACT--TGNC------ACACANTCATC-CTTG----GGGTG-AAGGGGA-TTCGAGG--TTGTTCAATATA-AAGGACCAGGCCCCCA-TC-AA-AGGGGAGA-TAATCACG-AAAATG-C--AAAA-ATAGGGTG-GTG--TCATT-T-AAAANATCT-----TCTTCTCAAAGAAC-C-ACT--GG-G-NCAGNAAA-GC-TG-----------------TAAAT-TTA------TATG-G---AGCTTNNTGA-TA----------TCG-ANGGAGATTC--AA-GT-------TTG--TT-AAAT----CATGACCCC---CG-GGGGTA--CG---ATGGGGCCC-C-ANTNGGG-----GATCA-A----AGTTT-T-T----AC-ATA--TGAT-TAT--A----TAGGGAAAA-TCT------TT--TAAAAA---ATCTTCTCT-CAAGAACCACTGGG----CCAGAAAAGCTGAA-ATTTATACGAAAGCTTCCGTATATGGTGGATCGATTCAAGTTTGTTCAAATCATGGACCCCCGGGGGTACGATGTGGCCCCNATAGAGGATCAAAGTTTTACNTATGATCATNTAAGGGGAAAATTTCANAAAACTGATCTNCTCTCAAGAACCACTGGGGCCAGAACAAAAGCTAGAACAGAAATTTTCGATATGGAAAGGACATTCCTGAGCAGTTAGTATTAGTGTGGGGGA--T-TC-AAGTTGT-TC-AAATCATGACCCNNGGGGTACGATGAGGNCNACAATAAGGGGACTCAGAGTAGTTTTNCATGATGATTATATATGGGGAAAATCTTTNAAAAATATCNTCTTCAAGANCCACTGGGCCAGGAAAGCTTTCCTGTATAAAGTCGAGNTNNAANTTTGTTCAACATCATGACCCCCAGGGGTA--ATGTCGGGCCACAATAAAGGGATCAAAGTTTNACAT-GCAAATA------TATAGGGAAATCCTTT--TAAAA---T-CT-TC-TCA------TTGAACCAGACG---GNTGG-ATATTTACC--TG--AAAGCTTCCT--GATG-T-GAG-TGAGATTAAAGTTTGTTTCAGATAA-TGCCNTCCCC-----TCTGAGG-AGTTGGG--TGGCG-G-CGCA---ATAACGGGA-T-----TAA-AGTTGCTACTACC----TGCTCTTCTTTAGTG-AAGCAG--TGTCTCAGGTGAGGCGATGTGGCCCATGGGCCTCTTGTTGTTTGTTA
finalCons : NNNNNNNNNNNNNNNNNNNNNNNNNNNATTTTTA-G-TTCACCTGAA-CCGAAGGT-CAA-TGAGCT-ATTCT-GA-TCGCCTNTTGTC-GT-------CGTCCGTCTGTCCGTCCGTCC--------GTC-----TGTCTG-TTAA---TTTTTA-CATTTTCGT---TCTTC---TTCAAG---AAACC-----GC-TGGGCCA--AATTC-AACCAA-ACT--TGNC------ACACANTCATC-CTTG----GGGTG-AAGGGGA-TTCGAGG--TTGTTCAANATA-AAGGACCAGGCCCCCN-TC-AA-AGGGGAGA-TAATCACG-AAAATG-C--AAAA-ATAGGGTG-GTG--TCATT-T-AAAANATCT-----TCTTCTCAAAGAAC-C-ACT--GG-G-NCAGNAAA-GC-TG-----------------TAAAT-TTA------TATG-G---AGCTTNNTGA-TA----------TCG-ANGGAGATTC--AA-GT-------TTG--TT-AAAT----CATGACCCC---CG-GGGGTA--CG---ATGGGGCCCCNTTN--GGG-----GATCA-A----AGTTT-TT-----AC-ATA--TGAT-TATAG-----TAGGGAAAA-TCT------TT--TAAAAA---ATCTTCTCT-CAAGAACCACTGGG----CCAGAAAAGCTGAA-ATTTATACGAAAGCTTCCGTATATGGTGGATCGATTCAAGTTTGTTCAAATCATGGACCCCCGGGGGTACGATGTGGCCCCNATAGAGGATCAAAGTTTTACNTATGATCATNTAAGGGGAAAATTTCANAAAACTGATCTNCTCTCAAGAACCACTGGGGCCAGAACAAAAGCTAGAACAGAAATTTTCGATATGGAAAGGACATTCCTGAGCAGTTAGTATTAGTGTGGGGGA--T-TC-AAGTTGT-TC-AAATCATGACCCNNGGGGTACGATGAGGNCNACAATAAGGGGACTCAGAGTAGTTTTNCATGATGATTATATATGGGGAAAATCTTTNAAAAATATCNTCTTCAAGANCCACTGGGCCAGGAAAGCTTTCCTGTATAAAGTCGAGNTNNAANTTTGTTCAACATCATGACCCCCAGGGGTA--ATGTCGGGCCACAATAAAGGGATCAAAGTTTNACAT-GCAAATA------TATAGGGAAATCCTTT--TAAAA---T-CT-TC-TCA------TTGAACCAGACG---GNTGG-ATATTTACC--TG--AAAGCTTCCT--GATG-T-GAG-TGAGATTAAAGTTTGTTTCAGATAA-TGCCNTCCCC-----TCTGAGG-AGTTGGG--TGGCG-G-CGCA---ATAACGGGA-T-----TAA-AGTTGCTACTACC----TGCTCTTCTTTAGTG-AAGCAG--TGTCTCAGGTGAGGCGATGTGGCCCATGGGCCTCTTGTTGTTTGTTA
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|9 ): TAGACCAGAAAAACTTAACCAGCATAGAAGTTTCATTATATATAAATTATTAAGGTTTGTTTGGATCATGATTTCCAGAGCTGGGGATGTTCTACAGGGTGGGGGGGGGGGTGTTAAAGTTTTAACTAGAAGTATAGGAAAATTCTT
Alignments
lowQualScore : 222 1 222222 11 1 1 33333333333 33333333 22222 11 111 33 11111 222 55555555 11 11 1 11 33333333 1 11 1111 1 111 222 33333333333 1 1 33333333 1111 88888888888888888888888888888888888888888 11 1 44444444444444 11 1 3333333 11 1 3333 1111 11 1111 1111111 22222 1111 222222 11 2222 2222222222 1111 1 2222 1 1 11 1 1 222 1 1 11 222 1 222 222222 11 222 2222 333333333333333 2222 1 1 1 11 1 1 2222 11 1 222 1 1 1 1 222 111 1 11 1 1 333333 1 11 22222 1 1 333333 44444444444 11 11 11 333 2222 11 1 1 1 33333 22 11 3333333333333 3333333 1 11 2222 1 11 11 1
lowQualScore : 222 3 666666 2 33 0 0 1 66666666666 0 22 66666666 55555 22 444 8 8 00 99999 3 333 00000000 2 33 33 0 33 00000000 0 0 0 2 00 3 7777 5 6 3 8 111 1 0 99 8 55 55 4 4 888 4 66 4 5 66 999 1 00000000000 55 0 0 33333333 1 0000 66666666666666666666666666666666666666666 11 0 55555555555555 111 33 0 2222222 33 0 1111 7777 8 11 7777 8888888 00000 1 8 7777 8 555555 88 11 3 8 8 2222 666 8 5555555555 4444 2 0 0 3 8888 6 3 0 2 5 88 5 5 000 5 1 5 1 1 88 1 000 1 5 111 999999 77 111 3333 222222222222222 2222 3 3 3 6 22 2 1 66 5 5 4444 1 88 5 1 111 1 5 1 5 5 5 111 2 1 777 1 5 6 88 3 6 7 7 2 1 3 888888 7 2 88 77777 3 3 888888 22222222222 88 88 88 444 2222 88 5 5 3 1 33333 7 00 88 4444444444444 7 7777777 3 44 6 8888 7 7 3 88 33 6 6 7 5
lowQualScore : ... . ...... . .. . . . ........... . .. ........ ..... .. ... . . .. ..... . ... ........ . .. .. . .. ........ . . . . .. . .... . . . . ... . . .. . .. .. . . ... . .. . . .. ... . ........... .. . . ........ . .... ......................................... .. . .............. ... .. . ....... .. . .... .... . .. .... ....... ..... . . .... . ...... .. .. . . . .... ... . .......... .... . . . . .... . . . . . .. . . ... . . . . . .. . ... . . ... ...... .. ... .... ............... .... . . . . .. . . .. . . .... . .. . . ... . . . . . . ... . . ... . . . .. . . . . . . . ...... . . .. ..... . . ...... ........... .. .. .. ... .... .. . . . . ..... . .. .. ............. . ....... . .. . .... . . . .. .. . . . .
lowQualScore : 000 3 888888 5 55 0 0 0 22222222222 2 88 22222222 00000 55 000 0 0 00 22222 2 333 77777777 5 88 22 0 88 00000000 2 2 8 5 22 2 0000 0 0 2 0 888 4 8 66 0 44 33 4 0 444 4 11 4 0 99 222 0 88888888888 88 0 0 22222222 0 2222 22222222222222222222222222222222222222222 88 0 22222222222222 555 88 0 5555555 88 0 2222 2222 0 00 8888 8888888 00000 4 0 0000 0 888888 66 00 2 0 0 2222 444 0 6666666666 8888 5 2 0 2 3333 7 3 7 5 5 00 5 0 000 5 0 5 0 0 00 0 555 0 0 000 555555 55 000 5555 000000000000000 7777 3 3 3 7 00 5 0 55 5 0 0000 0 00 5 0 555 0 5 0 0 0 5 555 5 0 555 0 0 7 33 7 7 3 3 0 0 3 333333 3 0 33 77777 3 3 333333 33333333333 33 33 33 000 3333 55 5 0 3 0 33333 3 77 33 3333333333333 3 7777777 3 00 7 3333 3 3 3 33 33 7 7 3 0
consensus : NNNNNNNNNNNNNNNNNNNNNNNNNNNATTTTTA-G-TTCACCTGAA-CCGAAGGT-CAA-TGAGCT-ATTCT-GA-TCGCCTNTTGTC-GT-------CGTCCGTCTGTCCGTCCGTCC--------GTC-----TGTCTG-TTAA---TTTTTA-CATTTT-CGA-TTCTTC---TTCAAG---AAACC-----GC-TGGGCCA--AATTC-AACCAA-ACT--TG------NCACACANTCATC-CTTG----GGGTG-AAGGGGA-TTCGAGG--TTGTTCAATATA-AAGGACCAGGCCCCCN-TC-AA-AGGGGAGA-TAATCACG-AAAATG-C--AAAAA-TAGGGTG-GTG--TCATT-T-AAAANATCT-----TCTTCTCAAAGAAC-C-ACT--GG-G-NCAGNAAA-GC-TG-----------------TAAAT-TTA------TACG-G---AGCTTNNTGA-TA----------TCG-ANGGAGATTC--AA-GT-------TTG--TT-AAAT----CATGACCCC---CG-GGGGTA--CG---ATGGGGCCC-CANTN-GGG-----GATCA-A----AGTTT-T-T----AC-ATA--TGAT-TA-TA---GTAGGGAAAA-TCT------TT--TAAAAA---ATCTTCTCT-CAAGAACCACTGGG----CCAGAAAAGCTGAA-ATTTATACGAAAGCTTCCGTATATGGTGGATCGATTCAAGTTTGTTCAAATCATGGACCCCCGGGGGTACGATGTGGCCCCNATAGAGGATCAAAGTTTTACNTATGATCATNTAAGGGGAAAATTTCANAAAACTGATCTNCTCTCAAGAACCACTGGGGCCAGAACAAAAGCTAGAACAGAAATTTTCGATATGGAAAGGACATTCCTGAGCAGTTAGTATTAGTGTGGGGGA--T-TC-AAGTTGT-TC-AAATCATGACCCNNGGGGTACGATGAGGNCNACAATAAGGGGACTCAGAGTAGTTTTNCATGATGATTATATATGGGGAAAATCTTTNAAAAATATCNTCTTCAAGANCCACTGGGCCAGGAAAGCTTTCCTGTATAAAGTCGAGNTNNAANTTTGTTCAACATCATGACCCCCAGGGGTA--ATGTCGGGCCACAATAAAGGGATCAAAGTTTNACAT-GCAAATA------TATAGGGAAATCCTTT--TAAAA---T-CT-TC-TCA------TTGAACCAGACG---GNTGG-ATATTTACC--TG--AAAGCTTCCT--GATG-T-GAG-TGAGATTAAAGTTTGTTTCAGATAA-TGCCNTCCCC-----TCTGAGGA-GTTGGG--TGGCG---G-CGCA-ATAACGGGA-T-----TAA-AGTTGCTACTACCT----GCTCTTCTTTAGTG-AAGCAG--TGTCTCAGGTGAGGCGATGTGGCCCATGGGCCTCTTGTTGTTTGTTA
Reference ( family-9 ) : NNNNNNNNNNNNNNNNNNNNNNNNNNNATTTTTA-G-TTCACCTGAA-CCGAAGGT-CAA-TGAGCT-ATTCT-GA-TCGCCTNTTGTC-GT-------CGTCCGTCTGTCCGTCCGTCC--------GTC-----TGTCTG-TTAA---TTTTTA-CATTTT-CG--TTCTTC---TTCAAG---AAACC-----GC-TGGGCCA--AATTC-AACCAA-ACT--TG------NCACACANTCATC-CTTG----GGGTG-AAGGGGA-TTCGAGG--TTGTTCAANATA-AAGGACCAGGCCCCCN-TC-AA-AGGGGAGA-TAATCACG-AAAATG-C--AAAAA-TAGGGTG-GTG--TCATT-T-AAAANATCT-----TCTTCTCAAAGAAC-C-ACT--GG-G-NCAGNAAA-GC-TG-----------------TAAAT-TTA------TATG-G---AGCTTNNTGA-TA----------TCG-ANGGAGATTC--AA-GT-------TTG--TT-AAAT----CATGACCCC---CG-GGGGTA--CG---ATGGGGCCC-CNTTN-GGG-----GATCA-A----AGTTT-T-T----AC-ATA--TGAT-TA-TA---GTAGGGAAAA-TCT------TT--TAAAAA---ATCTTCTCT-CAAGAACCACTGGG----CCAGAAAAGCTGAA-ATTTATACGAAAGCTTCCGTATATGGTGGATCGATTCAAGTTTGTTCAAATCATGGACCCCCGGGGGTACGATGTGGCCCCNATAGAGGATCAAAGTTTTACNTATGATCATNTAAGGGGAAAATTTCANAAAACTGATCTNCTCTCAAGAACCACTGGGGCCAGAACAAAAGCTAGAACAGAAATTTTCGATATGGAAAGGACATTCCTGAGCAGTTAGTATTAGTGTGGGGGA--T-TC-AAGTTGT-TC-AAATCATGACCCNNGGGGTACGATGAGGNCNACAATAAGGGGACTCAGAGTAGTTTTNCATGATGATTATATATGGGGAAAATCTTTNAAAAATATCNTCTTCAAGANCCACTGGGCCAGGAAAGCTTTCCTGTATAAAGTCGAGNTNNAANTTTGTTCAACATCATGACCCCCAGGGGTA--ATGTCGGGCCACAATAAAGGGATCAAAGTTTNACAT-GCAAATA------TATAGGGAAATCCTTT--TAAAA---T-CT-TC-TCA------TTGAACCAGACG---GNTGG-ATATTTACC--TG--AAAGCTTCCT--GATG-T-GAG-TGAGATTAAAGTTTGTTTCAGATAA-TGCCNTCCCC-----TCTGAGGA-GTTGGG--TGGCG---G-CGCA-ATAACGGGA-T-----TAA-AGTTGCTACTACCT----GCTCTTCTTTAGTG-AAGCAG--TGTCTCAGGTGAGGCGATGTGGCCCATGGGCCTCTTGTTGTTTGTTA
gi|1 : ATTTTTA-GCTTCACCTGAA-CTGAAGGTTCAG-TGAGCT-ATTCT-GCCTCGCTTGCCGTC-GT-------CCTCCGTCTGTCCGTCCGTCC--------GTC-----TGTCTGGTTAA---TTTTCA-CATTTT-CGACTTCTTC---CTCAAG---AAACC-----GC-TGGGCCA--AATTCCAACCAA-GCT--TG------GCACACATTCATC-CTTG----GGGTG-AAGGGGA-TTCGGGG--TTGTTCAAT-TA-AAGGTCCAGGCCCCCAATC-AA-AGTGGAGA-TAATCAGG-AAAATG-A--AAAAAATAGGGTGCGTG--TCATT---AAAAAATCT-----TCTTCTCAAAGAACGC-ACT--TG-G-CCAGAAAA-GC-TG-----------------CAAAT-TTA------TATG-----AGCTTTCTGA-TA----------TTG-GTGGAGATTC--AA-GT-------TTG--TT-AAAT----CATGACCCC---CG-GGTGTA--CG---ATGGGGCCC-CAAAAAGGG-----GATAA-A----AGTTT-T-T----AC-ATA--TGAT-TA-TA---TTGGG--AAA-TCT------TT--TAAAAA---ATCTTTTCT-CAAGAACCACTGGG----CCAGAAAAGCTGAA-ATTTATATGAAAGCTTCTGTATA-GGTGGATCAATTCAAG-TTGTTCAAATCATGGACCCC---GGGTACGATG-GGCCCCAATAGAGG-TCAAAGTTTTACATATGATTATTTAAGGGGAAAATTTCAAAAAA---ATCTTCTCTTAAGAACCACT-GGGCCAG---AAAAGCT------GAAATTTT--AT---GAAAG--C-TTCCTGA-----TA-TA-----GTGGGAGA--TGTC-AAGTTGT-TC-AAATCATGACCCACGGGGTACGATGAGGCCC-CAATAAAAGGA-TCAG----GTTTTCCATGAT--TTATATA-GGGGAAAATCTTTTAAA---ATCTTCTTCAAGAACCACT-GGCCAGGAAAGCTTTCCTG-ATAAAGTGAAGGTAAAAGTTTGTTCAA-ATTATGACCTCCAGGTGTACCATATGGGGCCACAATAAAGGGATCAATATTTTTCATAGCAAATA------TATAGGGAAATTCTTTTATAAAA---T-CTATC-TCA------TTGAACCAGACGCCCGCTGGAATATTTACCTTTGACAAAGCTTCCT--GATG-T-GAG-T--AATTAAAGTTTGTTTCAGATAATTGCCCCCCCCCCCCTTCTCAGG--GTTGAG--TGG-G---G-CACAGATAACGGGATT-----TAA-AGTTGCTAC-ACTT----GCTCTTCTTTAGTG-AAGCAG--TGTTTCAGGTGA-GCGATGTGGCCCATGGG-CTCTTGTTGTTT-TTA
gi|10 : taatatatgattttttaacagggtgtaTTTATAAAACTGATTTATTCTCAAGAACCACTGGGGCCAGAACAAAAGCTAGAACAAAAATTTTCGATATGGAAAGGACATTCCTGAGCAGTTAGTATTAGTGTGGAGGAATT-TCAAAGTTGTATCAAAATCAg
gi|11 : cATTTTTACA-TTGAACTGAGTCCAAAGAT-CAAATCAGCT-TTTCT-GA-TCGCCTTTTGTCTAT-------CGTCTGTCTGTCCGTCCGTCCTTCTGTTTGTCAGCCTTGTCTG-TTAA---TTGTTAGCATTTT-C---TTCT
gi|12 : TTTTA-G-TTCACCTGAA-CCGAAGG--------------TTCT-GA-TAACCATTTGT---T-------CAT---------CGTCTGTCT--------GTC-----TGACTG-TTAATTTTTTTTA-CATTTT-CGATTTTTTC---TCCAA
gi|13 : ttatatatgcatatttacaGATAA-TGCCTTCCCA-----TC-GAGGAAGGTGGAATTGGCATGTG-CACACATA--GGGG-TGAATGTAAGAGTTGCTG-TACCTTAATGCTCTTCTTT-GTGAAAGCAGTATGCCTCAG
gi|14 : ----GGTTG-AAGGGAA-TTAAAAA--TTGTTCAAAATA-AAGGCCCAATTTCTCA-TTTAA-AAGGGAGA-CAATCAC--AAAATGGC--AAAAA-TAGGG
gi|15 : caaacttggtccatCTCGGGTGAG-CGATGTGACCCATGGGCCTCTTG
gi|16 : tttaaaattctttttgaaatcgattactgctgagtcagggccaagtttaGGACCAGGCCCCCA-TC-AA-AGGGGAGA-TAATCACG-AAAATG-C--AAAAA-TAGGGTG-GTG--TC
gi|17 : GGACCAGGCCCCTT-T--AA-AGGGGAGA-TAATCACG-AAAATG-C--AAAAA-TA-GGTG-GTG--T
gi|18 : CCCCCT-TC-AA-GGGGAAGA-TAATCACT-AAAATG-CAAAAAAA-TAGGGTG-GTG--T
gi|19 : GACCAGGCCCCCA-TC-AA-AGGGGAGA-TAATCACA-AAAATG-t
gi|2 : TAA---CTTTTA-CATTTTTCG--CTCTTC---T-CAGGGGGAATCCTTCGTGTGTGGGCCATAAATTC-AACCCA-ACT--TGGGGGTTAGACACAATCTTTACCTGTAAAGGGTACAAGGG---TTTGGGG--TAATACAATATATAAAGA-CAG---TCCA-TT-AA-A---GAGACTAATCAAGCAGAATG-C--AAAAA-TAGGG-G-GTGGTTCATTGG-AAAAAAACTGAATATC-TCT-ATAGAAC-CTACTGGGG-G-GCAGCAAA-GCATGGAGCTTTTAAGGCAGACTAGAT-TTA------TAC-------ACTTAGTAA-TA----------TCACAGGAAGATTTCAAA-GT-------TTGTTTT-CAATA---CATTACCT-------GTGATA--CGCACATGGGGTCCACAAAT-AGG-----ATTCA-A----AGTTTAT-TAAACAC-ATA--T-AT-AA-TA---ATAGATACAA-TCTACAGTCTTAGTAAAAATATATCTTCTTT-TAAGA--TACTTGGTGTTCAAGTAAAG-TGAATAATTACACAA
gi|20 : GAGA-TGATTAAG-AAAATG-C--AAAAA-TAGGGTG-GTG--TCAtattctg
gi|3 : GA--T-TC-AAGTTGT-TT-CAAT-ATGACCCTGGGGATAAAATGAGGGCGACAATA-GGGGACTCAAAGTAGTTTTACATGATGATTATATATAAGGAAAATCTTTGAAAAATATCATC-TCAAGATCCACTGGGCCAGAAAAGCTTT-CTGTAT---GTCGAGCTTC-ATTTTGTTCAACATCATGA-CCCCAGGGGTA--ATGTCGGG-CACA--GAAGGGATCATA-TTTAACAA-TCAATTA------T-TAGGGAATTCTTTT--TAAAA---TACT-TCTTCA------TTGAAACAGACG---AGTGG-ATATTTACC--TG--AAAGCTTCCT--GATGATGGAGTTGAGAT--AAG-TTGTTT-AGATAA-TGCCATCCCC-----TCTGAGGA-GTTGGG--TGGCG---GCCGCA---AACGGGA-T-----TAA-AGTTGCTACTA-CT----GCTCTTC-TTAGTG-AAGCAG--TGTTTCAGGTGAGGCGATGTGG-CCATGGGCCTCT--TTGTTTGTTA
gi|4 : GACCA--ATTCC-AATCAC-ATT--TG------TCATAAAGT-ATG-CTTG----GG-TG-AAGGGGA-TTCAAGG---TGAACAA-ATG-AAGAAACATGCCTCCT-TT-AAGAGGGGGG--------------GTG-C--ACAAA-TAGGGCG-G-G--TAATT-T-AAAACA----------TTCTC-AAGAAT-C-ACT--G------AGTAAA-AA-TA-----------------TAAAT-TTA------CAAGAA---AACTTCATGA-CA----------T-G-AAATAGATTC--AA-GT-------TTA--TTAAAAT----CATGAAACC---CG-GAGATG--GA---GCGGGGTCA-TCTTT-GGG-----GATTA-A----A-TTT-T-T----A----A--TAATATA-TACATGTAGGGA------------------AAAAA---AT----TCT-CAAGAA
gi|5 : --AAAAA-TAGGGTG-GTG--TCATT-TTAAAACATCT-----TATTCTCAAGAAAC-C-ACT--GGTGCTCAGAAAACGC-TG------------------AAATCTTACCTTGTTATG-GAATAGCTT-CTGAGTATATTCCCTGTTCG-ACTGAAATTC--AAGGTCATTCAGTTG--TC-AAATTGTCCATTAACTTATACGCGGGGTAATCG----TGGCGCCC-CAGTG-GGGCCATTGTCCATACCCTAGCTT-TAT----ACAATATTTGAT-TATTA---GTAGGGAAAATTCT------TT--TTAAAA---
gi|6 : ATGACCCC---CG-GGGGTA--CG---ATGTGGCCC-CTTTA-GGG-----GATCA-A----AGTTT-T------AC-CTA--TGAT-CA-TA----TCGGGAAAA-TCT------TT--TAAAA-----TCTTCTCAACAAGAACCACTGGG----CCAGAAAAGCTGAA-ATTTATATGAAAGCTTCCTTATATAGTGGA--GATTCAAGTTTGTTCAAATCATG-ACCCCCGGGGGTACGATGTGGCCCCTATAGAGGATCAAAGTTTTACCTATGATCATATA--GGGAAAATg
gi|7 : AA-TGAGCTGATTCTTGA-TCGCCTGTTGTC-GTGTCTTTCTGTCCGTCTGTCTGTCTGTCC--------GTC-----TGTCC--TTAA---CTTTCA-CATTTT-CGA-CTCTTCTCGTTC-AG---ACACTA----AC-TGGA-CG--AATTC--ACCAAGACTTATG------TTAAATA-TCATC-CT------GGGTGAAAGGGGACTTCAAAGCTTTGTTC--CATG-ACAGACCAGGCCCCAT-TC----AGGGGAGA-TAATCc
gi|8 : CCCCCTCGGGTA--GAGTTTAGCCACAATAG-GAGCTCAAAGTTTCACAT-GCAAATATACATGTATAGAGAAATC--TT--TAAAATATT-CT-TC-TCAAGAACTTTGAACTAGA------AT---ATATTTACC--TG--AATGCTTCCTTAGATG---GAG-T
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|9 ): TAGACCAGAAAAACTTAACCAGCATAGAAGTTTCATTATATATAAATTATTAAGGTTTGTTTGGATCATGATTTCCAGAGCTGGGGATGTTCTACAGGGTGGGGGGGGGGGTGTTAAAGTTTTAACTAGAAGTATAGGAAAATTCTT