lowQualScore : 1
lowQualScore : 7 555 555 33 2 77777 444 2 2 2 2 5
lowQualScore : . ... ... .. . ..... ... . . . . .
lowQualScore : 8 000 000 99 9 11111 777 9 9 9 9 7
consensus : AAATTATGTTT---ATT---TC--ATTAGAGTA-CCTGA-----ATT---AAA-TACA-T-TC-TGT-CTCAGAATAAGCCACT
Reference ( gi|134337 ) : AAATTATGATT---ATT---TC--ATTAGAGTA-CCTGA-----ATT---AAA-TACA-T-TC-TGT-CTCAGAATAAGCCACT
gi|134339 : AAATTATGTTT---ATT---TC--ATTAGAGTA-TCTGA-----ATT---ATA-TACA-T-TC-TGT-CTCAGAATAAGCCACT
gi|134338 : AAATTATGTTT---ATT---TC--ATTAGAGTA-TCTGA-----ATT---ATA-TACA-T-TC-TGT-CTCAGAATAAGCCACT
gi|134340 : AAATCATGTTT---ATT---TT--ATTAGAGTA-CCTGA-----ATT---AAA-TACA-T-TC-TGT-CTCAGAATAAACCACT
gi|134341 : AAATTTTGTTT---ATT---TC--ATTAGAGTA-TCTGA-----ATT---AGA-TACA-T-TC-TGT-CTCAGAATAAGCCACT
gi|134343 : AAATCATGTTT---ATT---TC--ATTAGAGTA-CCTGA-----ATT---AAA-TACA-T-TC-AGT-CTCAGAATAAGCCA
gi|134344 : AAATTATGTTT---ATT---TTCAATTAGAGTA-CCTGA-----ATC---AAA-TACA-T-TC-TGTCCTCAGAAAAAGCCACT
gi|134345 : AAACCATGCTT---ATT---TC--ATTAGAGTA-CCTGA-----ATT---AAA-TGCA-T-TC-TGT-CTCAGAGCAA
gi|134346 : AAATCATGTTT---ATT---TC--ATCAGAGTA-CCTGA-----A-T---AAA-TACA-T-TC---A-CTCAG-ATAAG-CACT
gi|134342 : AAATTATGGTTTTGATT---TC--ATTAGAGT--TTTGA-----ATT---AAA----A-T-TCTTGTACGCAAAATAAGCCACT
gi|134347 : AAATTATGTTT---ATT---TC--ATTAGAGTA-CCTGA-----ATT---AA
gi|134348 : AATTATG-TT---GTTACGGC--ACTGGAGTA-CCTGATTGTGATTTTAAGA-TACA-T-TT-TGT-CTCAGAATAAGCCACT
gi|134350 : ATGTTT---ATT---TC--ATTAGAGTA-CCTGA-----ATT---ATA-TACA-T-TT-TCT-CACAGAATAAGCCACT
gi|134351 : ATGTTT---ATT---TC--ATTAGAGTAACCTGA-----ATT---AAAATACAGTATC-TGT-CTCAGCATAAGCCACT
gi|134349 : TT---ATT---TC--ATTAGAGTA-CCTGA-----ATT---AAA-TTCA-G-TC-TGT-CTCAGAATAAACCACT
gi|134352 : atttTT---AAA-TACA-T-TC-TGT-CTTAGAATAAGCCACT
Alignments
lowQualScore : 33 33 2 33 2 66666 666 2 2 2 5
lowQualScore : .. .. . .. . ..... ... . . . .
lowQualScore : 77 77 7 77 7 77777 999 7 7 7 3
consensus : AAATTATG--TT--T-ATTTC--ATTAGAGT-ACCTGA-----ATT---AAATACA-T-TC-TGT-CTCAGAATAAGCCACT
Reference ( family-961 ) : AAATTATG--TT--T-ATTTC--ATTAGAGT-ACCTGA-----ATT---AAATACA-T-TC-TGT-CTCAGAATAAGCCACT
gi|134337 : AAATTATG--AT--T-ATTTC--ATTAGAGT-ACCTGA-----ATT---AAATACA-T-TC-TGT-CTCAGAATAAGCCACT
gi|134338 : AAATTATG--TT--T-ATTTC--ATTAGAGT-ATCTGA-----ATT---ATATACA-T-TC-TGT-CTCAGAATAAGCCACT
gi|134339 : AAATTATG--TT--T-ATTTC--ATTAGAGT-ATCTGA-----ATT---ATATACA-T-TC-TGT-CTCAGAATAAGCCACT
gi|134340 : AAATCATG--TT--T-ATTTT--ATTAGAGT-ACCTGA-----ATT---AAATACA-T-TC-TGT-CTCAGAATAAACCACT
gi|134341 : AAATTTTG--TT--T-ATTTC--ATTAGAGT-ATCTGA-----ATT---AGATACA-T-TC-TGT-CTCAGAATAAGCCACT
gi|134342 : AAATTATGGTTT--TGATTTC--ATTAGAGT--TTTGA-----ATT---AAA---A-T-TCTTGTACGCAAAATAAGCCACT
gi|134343 : AAATCATG--TT--T-ATTTC--ATTAGAGT-ACCTGA-----ATT---AAATACA-T-TC-AGT-CTCAGAATAAGCCA
gi|134344 : AAATTATG--TT--T-ATTTTCAATTAGAGT-ACCTGA-----ATC---AAATACA-T-TC-TGTCCTCAGAAAAAGCCACT
gi|134345 : AAACCATG--CT--T-ATTTC--ATTAGAGT-ACCTGA-----ATT---AAATGCA-T-TC-TGT-CTCAGAGCAA
gi|134346 : AAATCATG--TT--T-ATTTC--ATCAGAGT-ACCTGA-----A-T---AAATACA-T-TC---A-CTCAG-ATAAG-CACT
gi|134347 : AAATTATG--TT--T-ATTTC--ATTAGAGT-ACCTGA-----ATT---AA
gi|134348 : AATTATG--TTGTT-ACGGC--ACTGGAGT-ACCTGATTGTGATTTTAAGATACA-T-TT-TGT-CTCAGAATAAGCCACT
gi|134349 : ATT--TT--T-ATTTC--ATTAGAGT-ACCTGA-----ATT---AAATTCA-G-TC-TGT-CTCAGAATAAACCACT
gi|134350 : ATG--TT--T-ATTTC--ATTAGAGT-ACCTGA-----ATT---ATATACA-T-TT-TCT-CACAGAATAAGCCACT
gi|134351 : ATG--TT--T-ATTTC--ATTAGAGTAACCTGA-----ATTA--AAATACAGTATC-TGT-CTCAGCATAAGCCACT
gi|134352 : TT---AAATACA-T-TC-TGT-CTTAGAATAAGCCACT
Alignments
lowQualScore : 33 33 2 33 2 66666 666 2 2 2 5
lowQualScore : .. .. . .. . ..... ... . . . .
lowQualScore : 77 77 7 77 7 77777 999 7 7 7 3
consensus : AAATTATG--TT--T-ATTTC--ATTAGAGT-ACCTGA-----ATT---AAATACA-T-TC-TGT-CTCAGAATAAGCCACT
Reference ( family-961 ) : AAATTATG--TT--T-ATTTC--ATTAGAGT-ACCTGA-----ATT---AAATACA-T-TC-TGT-CTCAGAATAAGCCACT
gi|134337 : AAATTATG--AT--T-ATTTC--ATTAGAGT-ACCTGA-----ATT---AAATACA-T-TC-TGT-CTCAGAATAAGCCACT
gi|134338 : AAATTATG--TT--T-ATTTC--ATTAGAGT-ATCTGA-----ATT---ATATACA-T-TC-TGT-CTCAGAATAAGCCACT
gi|134339 : AAATTATG--TT--T-ATTTC--ATTAGAGT-ATCTGA-----ATT---ATATACA-T-TC-TGT-CTCAGAATAAGCCACT
gi|134340 : AAATCATG--TT--T-ATTTT--ATTAGAGT-ACCTGA-----ATT---AAATACA-T-TC-TGT-CTCAGAATAAACCACT
gi|134341 : AAATTTTG--TT--T-ATTTC--ATTAGAGT-ATCTGA-----ATT---AGATACA-T-TC-TGT-CTCAGAATAAGCCACT
gi|134342 : AAATTATGGTTT--TGATTTC--ATTAGAGT--TTTGA-----ATT---AAA---A-T-TCTTGTACGCAAAATAAGCCACT
gi|134343 : AAATCATG--TT--T-ATTTC--ATTAGAGT-ACCTGA-----ATT---AAATACA-T-TC-AGT-CTCAGAATAAGCCA
gi|134344 : AAATTATG--TT--T-ATTTTCAATTAGAGT-ACCTGA-----ATC---AAATACA-T-TC-TGTCCTCAGAAAAAGCCACT
gi|134345 : AAACCATG--CT--T-ATTTC--ATTAGAGT-ACCTGA-----ATT---AAATGCA-T-TC-TGT-CTCAGAGCAA
gi|134346 : AAATCATG--TT--T-ATTTC--ATCAGAGT-ACCTGA-----A-T---AAATACA-T-TC---A-CTCAG-ATAAG-CACT
gi|134347 : AAATTATG--TT--T-ATTTC--ATTAGAGT-ACCTGA-----ATT---AA
gi|134348 : AATTATG--TTGTT-ACGGC--ACTGGAGT-ACCTGATTGTGATTTTAAGATACA-T-TT-TGT-CTCAGAATAAGCCACT
gi|134349 : ATT--TT--T-ATTTC--ATTAGAGT-ACCTGA-----ATT---AAATTCA-G-TC-TGT-CTCAGAATAAACCACT
gi|134350 : ATG--TT--T-ATTTC--ATTAGAGT-ACCTGA-----ATT---ATATACA-T-TT-TCT-CACAGAATAAGCCACT
gi|134351 : ATG--TT--T-ATTTC--ATTAGAGTAACCTGA-----ATTA--AAATACAGTATC-TGT-CTCAGCATAAGCCACT
gi|134352 : TT---AAATACA-T-TC-TGT-CTTAGAATAAGCCACT
blockSeqs : GT GT G CA A TTGTG TTA G A T A
blockSeqs : . . . . . . A . . . C
blockSeqs : . . . . . . . . . . .
blockSeqs : . . . . . . . . . . .
blockSeqs : . . . . . . . . . . .
blockSeqs : . . . . . . . . . . .
blockSeqs : . . . . . . . . . . .
blockSeqs : . . . . . . . . . . .
blockSeqs : . . . . . . . . . . .
blockSeqs : . . . . . . . . . . .
blockSeqs : . . . . . . . . . . .
blockSeqs : . . . . . . . . . . .
blockSeqs : . . . . . . . . . . .
blockSeqs : . . . . . . . . . . .
blockSeqs : .
blockSeqCons :
originalCons : AAATTATG--TT--T-ATTTC--ATTAGAGT-ACCTGA-----ATT---AAATACA-T-TC-TGT-CTCAGAATAAGCCACT
finalCons : AAATTATG--TT--T-ATTTC--ATTAGAGT-ACCTGA-----ATT---AAATACA-T-TC-TGT-CTCAGAATAAGCCACT
Alignments
lowQualScore : 33 33 2 33 2 66666 666 2 2 2 5
lowQualScore : .. .. . .. . ..... ... . . . .
lowQualScore : 77 77 7 77 7 77777 999 7 7 7 3
consensus : AAATTATG--TT--T-ATTTC--ATTAGAGT-ACCTGA-----ATT---AAATACA-T-TC-TGT-CTCAGAATAAGCCACT
Reference ( family-961 ) : AAATTATG--TT--T-ATTTC--ATTAGAGT-ACCTGA-----ATT---AAATACA-T-TC-TGT-CTCAGAATAAGCCACT
gi|134337 : AAATTATG--AT--T-ATTTC--ATTAGAGT-ACCTGA-----ATT---AAATACA-T-TC-TGT-CTCAGAATAAGCCACT
gi|134338 : AAATTATG--TT--T-ATTTC--ATTAGAGT-ATCTGA-----ATT---ATATACA-T-TC-TGT-CTCAGAATAAGCCACT
gi|134339 : AAATTATG--TT--T-ATTTC--ATTAGAGT-ATCTGA-----ATT---ATATACA-T-TC-TGT-CTCAGAATAAGCCACT
gi|134340 : AAATCATG--TT--T-ATTTT--ATTAGAGT-ACCTGA-----ATT---AAATACA-T-TC-TGT-CTCAGAATAAACCACT
gi|134341 : AAATTTTG--TT--T-ATTTC--ATTAGAGT-ATCTGA-----ATT---AGATACA-T-TC-TGT-CTCAGAATAAGCCACT
gi|134342 : AAATTATGGTTT--TGATTTC--ATTAGAGT--TTTGA-----ATT---AAA---A-T-TCTTGTACGCAAAATAAGCCACT
gi|134343 : AAATCATG--TT--T-ATTTC--ATTAGAGT-ACCTGA-----ATT---AAATACA-T-TC-AGT-CTCAGAATAAGCCA
gi|134344 : AAATTATG--TT--T-ATTTTCAATTAGAGT-ACCTGA-----ATC---AAATACA-T-TC-TGTCCTCAGAAAAAGCCACT
gi|134345 : AAACCATG--CT--T-ATTTC--ATTAGAGT-ACCTGA-----ATT---AAATGCA-T-TC-TGT-CTCAGAGCAA
gi|134346 : AAATCATG--TT--T-ATTTC--ATCAGAGT-ACCTGA-----A-T---AAATACA-T-TC---A-CTCAG-ATAAG-CACT
gi|134347 : AAATTATG--TT--T-ATTTC--ATTAGAGT-ACCTGA-----ATT---AA
gi|134348 : AATTATG--TTGTT-ACGGC--ACTGGAGT-ACCTGATTGTGATTTTAAGATACA-T-TT-TGT-CTCAGAATAAGCCACT
gi|134349 : ATT--TT--T-ATTTC--ATTAGAGT-ACCTGA-----ATT---AAATTCA-G-TC-TGT-CTCAGAATAAACCACT
gi|134350 : ATG--TT--T-ATTTC--ATTAGAGT-ACCTGA-----ATT---ATATACA-T-TT-TCT-CACAGAATAAGCCACT
gi|134351 : ATG--TT--T-ATTTC--ATTAGAGTAACCTGA-----ATTA--AAATACAGTATC-TGT-CTCAGCATAAGCCACT
gi|134352 : TT---AAATACA-T-TC-TGT-CTTAGAATAAGCCACT