lowQualScore : 111
lowQualScore : 2 5 5 8 2 2 2 33 5 2 5 111 2 2 99 2 5 33 444 6 3
lowQualScore : . . . . . . . .. . . . ... . . .. . . .. ... . .
lowQualScore : 7 3 3 0 7 7 7 77 3 7 3 333 7 7 00 7 3 55 777 7 6
consensus : AGAGAG-AGA-CA-G-CGC-A-GC-G--CG-C-A-CG--ATAC-ACT-GG--C-GG-A-TTT---AGAGGGGCGCGGGGGG
Reference ( gi|10709 ) : AGAGAG-AGA-CA-G-CGC-A-GC-G--CG-C-A-CA--ATAC-ACT-GG--C-GG-A-TTT---AGAGGGGTGTGGGGGG
gi|10710 : AGAGAG-AGA-CA-G-CGC-A-GC-G--CG-C-A-CG--ATAC-ACT-GG--C-GG-A-TTT---AGAGGGGCGGGGG
gi|10711 : AGAGAG-AGA-CA-G-CGC-A-GC-G--AG-C-A-CA--ATAC-ACT-GG--CGGG-A-TTT---AAAGGGGTGGGGG
gi|10712 : AGAGAG-AGA-CA-G-CGCCA-GC-G--CG-C-A-CG--ATAC-ACT-GG--C-CG-ATTTT---AGA-GGGCGTGGGGGG
gi|10713 : AGAGAG-AGA-CA-G-CGC-A--C-G--CG-C-A-CG--ATAC-ACT-GG--C-GG-A--TT---AAAGGGCCGTGGGGGg
gi|10717 : AGAGAG-GGC-CA-G-CGC-A-GC-G--CGGC-A-CG--ATAC-ACT-GG--C-GG-A--TT---AGAGGGGCGTGAGGGG
gi|10715 : AGAGAG-AGA-CA-G-CGC-ACGC-G--CG-CTA-CG--AT-C-ACT-GC--C-GG-A-TTT---AGAGG---GCGGGGG
gi|10716 : AGAGAG-AGAGCA-GACGC-A-GC-G--AG-C-A-CG--A-AC-ACT-GG--C-GG-A-TTT---AAAGGGCTGGGAGG
gi|10714 : AGAGAG-AGA-CATG-CGC-A-GC-GATCG-C-AGCG--ATACGACT-GG--C-GG-A-TTTAAAAGAGGGG
gi|10718 : AGAGAGCAGAGCA-GGCGC-A-GC-G--CGGC-A-CG--ATAC-ACT-GG--C-GG-A-TTT---GTGGGGG
gi|10719 : GAGGT-AG--CA-G-CGC-A-GC-G--AG-C-AACA--ATAC-ACT-GG--C-GG-A-TTT---AAAGGGGGGCGGG
gi|10720 : AGAG-AGA-GA-G-AGC-A-GC-G--CG-C-A-CG--ATAC-ACT-GG--C-GG-A-TTT---AGA-GGGTGTGGGGGG
gi|10721 : AGAG-AGA-CA-GACGC-G-GC----CG-C-A-CG--ATAC-ACT-GG--C-GG-A--TT---AGTGGGG---GGGGGGg
gi|10722 : AGAG-AGA-CAAG-CGC-A-GCTG--AG-C-A-CG--ATAC-ACTTGGAAC-GG-A-TTT---AAAGGGG
gi|10724 : GAG-AGA-CA-G-CGC-A-GC-G--CG-C-A-CGACATAC-ACT-GGC-C-GGCA-TTT---AGAGGGG
gi|10723 : GAG-AGA-CA-G-CGC-A-GC-G--CG-C-A-CGACATAC-ACT-GGC-C-GGCA-TTT---AGAGGGGggaagg
Alignments
lowQualScore : 2 5 5 7 2 2 2 33 5 2 5 66 2 2 88 2 5 22 444 4 5
lowQualScore : . . . . . . . .. . . . .. . . .. . . .. ... . .
lowQualScore : 5 0 0 5 5 5 5 44 0 5 0 99 5 5 44 5 0 77 444 8 5
consensus : AGAGAG-AGA-CA-G-CGC-A-GC-G--CG-C-A-CG--ATAC-ACT-GG--C-GG-A-TTT---AGAGGGGCGCGGGGGG
Reference ( family-957 ) : AGAGAG-AGA-CA-G-CGC-A-GC-G--CG-C-A-CG--ATAC-ACT-GG--C-GG-A-TTT---AGAGGGGCGCGGGGGG
gi|10709 : AGAGAG-AGA-CA-G-CGC-A-GC-G--CG-C-A-CA--ATAC-ACT-GG--C-GG-A-TTT---AGAGGGGTGTGGGGGG
gi|10710 : AGAGAG-AGA-CA-G-CGC-A-GC-G--CG-C-A-CG--ATAC-ACT-GG--C-GG-A-TTT---AGAGGGGCGGGGG
gi|10711 : AGAGAG-AGA-CA-G-CGC-A-GC-G--AG-C-A-CA--ATAC-ACT-GG--CGGG-A-TTT---AAAGGGGTGGGGG
gi|10712 : AGAGAG-AGA-CA-G-CGCCA-GC-G--CG-C-A-CG--ATAC-ACT-GG--C-CG-ATTTT---AGA-GGGCGTGGGGGG
gi|10713 : AGAGAG-AGA-CA-G-CGC-A--C-G--CG-C-A-CG--ATAC-ACT-GG--C-GG-A--TT---AAAGGGCCGTGGGGGg
gi|10714 : AGAGAG-AGA-CATG-CGC-A-GC-GATCG-C-AGCG--ATACGACT-GG--C-GG-A-TTTAAAAGAGGGG
gi|10715 : AGAGAG-AGA-CA-G-CGC-ACGC-G--CG-CTA-CG--AT-C-ACT-GC--C-GG-A-TTT---AGAGG---GCGGGGG
gi|10716 : AGAGAG-AGAGCA-GACGC-A-GC-G--AG-C-A-CG--A-AC-ACT-GG--C-GG-A-TTT---AAAGGG
gi|10717 : AGAGAG-GGC-CA-G-CGC-A-GC-G--CGGC-A-CG--ATAC-ACT-GG--C-GG-A--TT---AGAGGGGCGTGAGGGGctgggagg
gi|10718 : AGAGAGCAGAGCA-GGCGC-A-GC-G--CGGC-A-CG--ATAC-ACT-GG--C-GG-A-TTT---GTGGGGG
gi|10719 : GAGGT-AG--CA-G-CGC-A-GC-G--AG-C-AACA--ATAC-ACT-GG--C-GG-A-TTT---AAAGGGGGGCGGG
gi|10720 : AGAG-AGA-GA-G-AGC-A-GC-G--CG-C-A-CG--ATAC-ACT-GG--C-GG-A-TTT---AGA-GGGTGTGGGGGG
gi|10721 : AGAG-AGA-CA-GACGC-G-GC----CG-C-A-CG--ATAC-ACT-GG--C-GG-A--TT---AGTGGGG---GGGGGGg
gi|10722 : AGAG-AGA-CAAG-CGC-A-GCTG--AG-C-A-CG--ATAC-ACTTGGAAC-GG-A-TTT---AAAGGGG
gi|10723 : GAG-AGA-CA-G-CGC-A-GC-G--CG-C-A-CGACATAC-ACT-GGC-C-GGCA-TTT---AGAGGGG
gi|10724 : GAG-AGA-CA-G-CGC-A-GC-G--CG-C-A-CGACATAC-ACT-GGC-C-GGCA-TTT---AGAGGGGggaagg
Alignments
lowQualScore : 2 5 5 7 2 2 2 33 5 2 5 66 2 2 88 2 5 22 444 4 5
lowQualScore : . . . . . . . .. . . . .. . . .. . . .. ... . .
lowQualScore : 5 0 0 5 5 5 5 44 0 5 0 99 5 5 44 5 0 77 444 8 5
consensus : AGAGAG-AGA-CA-G-CGC-A-GC-G--CG-C-A-CG--ATAC-ACT-GG--C-GG-A-TTT---AGAGGGGCGCGGGGGG
Reference ( family-957 ) : AGAGAG-AGA-CA-G-CGC-A-GC-G--CG-C-A-CG--ATAC-ACT-GG--C-GG-A-TTT---AGAGGGGCGCGGGGGG
gi|10709 : AGAGAG-AGA-CA-G-CGC-A-GC-G--CG-C-A-CA--ATAC-ACT-GG--C-GG-A-TTT---AGAGGGGTGTGGGGGG
gi|10710 : AGAGAG-AGA-CA-G-CGC-A-GC-G--CG-C-A-CG--ATAC-ACT-GG--C-GG-A-TTT---AGAGGGGCGGGGG
gi|10711 : AGAGAG-AGA-CA-G-CGC-A-GC-G--AG-C-A-CA--ATAC-ACT-GG--CGGG-A-TTT---AAAGGGGTGGGGG
gi|10712 : AGAGAG-AGA-CA-G-CGCCA-GC-G--CG-C-A-CG--ATAC-ACT-GG--C-CG-ATTTT---AGA-GGGCGTGGGGGG
gi|10713 : AGAGAG-AGA-CA-G-CGC-A--C-G--CG-C-A-CG--ATAC-ACT-GG--C-GG-A--TT---AAAGGGCCGTGGGGGg
gi|10714 : AGAGAG-AGA-CATG-CGC-A-GC-GATCG-C-AGCG--ATACGACT-GG--C-GG-A-TTTAAAAGAGGGG
gi|10715 : AGAGAG-AGA-CA-G-CGC-ACGC-G--CG-CTA-CG--AT-C-ACT-GC--C-GG-A-TTT---AGAGG---GCGGGGG
gi|10716 : AGAGAG-AGAGCA-GACGC-A-GC-G--AG-C-A-CG--A-AC-ACT-GG--C-GG-A-TTT---AAAGGG
gi|10717 : AGAGAG-GGC-CA-G-CGC-A-GC-G--CGGC-A-CG--ATAC-ACT-GG--C-GG-A--TT---AGAGGGGCGTGAGGGGctgggagg
gi|10718 : AGAGAGCAGAGCA-GGCGC-A-GC-G--CGGC-A-CG--ATAC-ACT-GG--C-GG-A-TTT---GTGGGGG
gi|10719 : GAGGT-AG--CA-G-CGC-A-GC-G--AG-C-AACA--ATAC-ACT-GG--C-GG-A-TTT---AAAGGGGGGCGGG
gi|10720 : AGAG-AGA-GA-G-AGC-A-GC-G--CG-C-A-CG--ATAC-ACT-GG--C-GG-A-TTT---AGA-GGGTGTGGGGGG
gi|10721 : AGAG-AGA-CA-GACGC-G-GC----CG-C-A-CG--ATAC-ACT-GG--C-GG-A--TT---AGTGGGG---GGGGGGg
gi|10722 : AGAG-AGA-CAAG-CGC-A-GCTG--AG-C-A-CG--ATAC-ACTTGGAAC-GG-A-TTT---AAAGGGG
gi|10723 : GAG-AGA-CA-G-CGC-A-GC-G--CG-C-A-CGACATAC-ACT-GGC-C-GGCA-TTT---AGAGGGG
gi|10724 : GAG-AGA-CA-G-CGC-A-GC-G--CG-C-A-CGACATAC-ACT-GGC-C-GGCA-TTT---AGAGGGGggaagg
blockSeqs : C G T A C C T AT G T G AC G T AA G C TT AAA C G
blockSeqs : . G A G . . . . G . A AC . . C . C T . T G
blockSeqs : . . . A . . . . . . . . . . C . . T . C T
blockSeqs : . . . . . . . . . . . . . . . . . T . C T
blockSeqs : . . . . . . . . . . . . . . . . . T . C C
blockSeqs : . . . . . . . . . . . . . . . . . T . G T
blockSeqs : . . . . . . . . . . . . . . . . . T . T C
blockSeqs : . . . . . . . . . . . . . . . . . T . . T
blockSeqs : . . . . . . . . . . . . . . . . . T . . .
blockSeqs : . . . . . . . . . . . . . . . . . T .
blockSeqs : . . . . . . . . . . . . . . . . . T .
blockSeqs : . . . . . . . . . . . . . . . . . T .
blockSeqs : . . . . . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . . . . . . . . .
blockSeqCons :
originalCons : AGAGAG-AGA-CA-G-CGC-A-GC-G--CG-C-A-CG--ATAC-ACT-GG--C-GG-A-TTT---AGAGGGGCGCGGGGGG
finalCons : AGAGAG-AGA-CA-G-CGC-A-GC-G--CG-C-A-CG--ATAC-ACT-GG--C-GG-A-TTT---AGAGGGGCGCGGGGGG
Alignments
lowQualScore : 2 5 5 7 2 2 2 33 5 2 5 66 2 2 88 2 5 22 444 4 5
lowQualScore : . . . . . . . .. . . . .. . . .. . . .. ... . .
lowQualScore : 5 0 0 5 5 5 5 44 0 5 0 99 5 5 44 5 0 77 444 8 5
consensus : AGAGAG-AGA-CA-G-CGC-A-GC-G--CG-C-A-CG--ATAC-ACT-GG--C-GG-A-TTT---AGAGGGGCGCGGGGGG
Reference ( family-957 ) : AGAGAG-AGA-CA-G-CGC-A-GC-G--CG-C-A-CG--ATAC-ACT-GG--C-GG-A-TTT---AGAGGGGCGCGGGGGG
gi|10709 : AGAGAG-AGA-CA-G-CGC-A-GC-G--CG-C-A-CA--ATAC-ACT-GG--C-GG-A-TTT---AGAGGGGTGTGGGGGG
gi|10710 : AGAGAG-AGA-CA-G-CGC-A-GC-G--CG-C-A-CG--ATAC-ACT-GG--C-GG-A-TTT---AGAGGGGCGGGGG
gi|10711 : AGAGAG-AGA-CA-G-CGC-A-GC-G--AG-C-A-CA--ATAC-ACT-GG--CGGG-A-TTT---AAAGGGGTGGGGG
gi|10712 : AGAGAG-AGA-CA-G-CGCCA-GC-G--CG-C-A-CG--ATAC-ACT-GG--C-CG-ATTTT---AGA-GGGCGTGGGGGG
gi|10713 : AGAGAG-AGA-CA-G-CGC-A--C-G--CG-C-A-CG--ATAC-ACT-GG--C-GG-A--TT---AAAGGGCCGTGGGGGg
gi|10714 : AGAGAG-AGA-CATG-CGC-A-GC-GATCG-C-AGCG--ATACGACT-GG--C-GG-A-TTTAAAAGAGGGG
gi|10715 : AGAGAG-AGA-CA-G-CGC-ACGC-G--CG-CTA-CG--AT-C-ACT-GC--C-GG-A-TTT---AGAGG---GCGGGGG
gi|10716 : AGAGAG-AGAGCA-GACGC-A-GC-G--AG-C-A-CG--A-AC-ACT-GG--C-GG-A-TTT---AAAGGG
gi|10717 : AGAGAG-GGC-CA-G-CGC-A-GC-G--CGGC-A-CG--ATAC-ACT-GG--C-GG-A--TT---AGAGGGGCGTGAGGGGctgggagg
gi|10718 : AGAGAGCAGAGCA-GGCGC-A-GC-G--CGGC-A-CG--ATAC-ACT-GG--C-GG-A-TTT---GTGGGGG
gi|10719 : GAGGT-AG--CA-G-CGC-A-GC-G--AG-C-AACA--ATAC-ACT-GG--C-GG-A-TTT---AAAGGGGGGCGGG
gi|10720 : AGAG-AGA-GA-G-AGC-A-GC-G--CG-C-A-CG--ATAC-ACT-GG--C-GG-A-TTT---AGA-GGGTGTGGGGGG
gi|10721 : AGAG-AGA-CA-GACGC-G-GC----CG-C-A-CG--ATAC-ACT-GG--C-GG-A--TT---AGTGGGG---GGGGGGg
gi|10722 : AGAG-AGA-CAAG-CGC-A-GCTG--AG-C-A-CG--ATAC-ACTTGGAAC-GG-A-TTT---AAAGGGG
gi|10723 : GAG-AGA-CA-G-CGC-A-GC-G--CG-C-A-CGACATAC-ACT-GGC-C-GGCA-TTT---AGAGGGG
gi|10724 : GAG-AGA-CA-G-CGC-A-GC-G--CG-C-A-CGACATAC-ACT-GGC-C-GGCA-TTT---AGAGGGGggaagg