lowQualScore : 111111 11
lowQualScore : 3 2 33 2 111111 555 2 5 8 2 2 2 2 2 2 22 33 2
lowQualScore : . . .. . ...... ... . . . . . . . . . .. .. .
lowQualScore : 1 9 99 9 111111 000 7 3 0 7 7 7 7 7 7 00 99 9
consensus : TTAA-AAAAA-AACACCA--A-AA------AA---CTTACA-CTGTTTT-G-T-G-AACA-TTT-ACA-TG-TAATC-GG--GGACA-TCT
Reference ( gi|23891 ) : TTAA-AAAAA-AACACCA--A-AA------AA---CTTACA-CTGTTTT-G-T-G-AACA-TTT-ACA-TG-TAATT-GG--GGACA-TCT
gi|23892 : TTAA-AAAAA-AACACCA--A-AA------AA---CTTACA-CAGTTTT-G-T-G-AACA-TTT-ACA-TG-TAATC-GG--GGACA-TCT
gi|23893 : TTAA-AAAAA-CAAACCA--A-AA------AA---CTTACA-CTGTTTT-G-T-G-AACA-TTT-ACA-TG-TGATC-GG--GGACA-TCT
gi|23894 : TTAAGAAAAA-AACACCA--A-AAT-----AA---CTTACA-CTGTTTTGG-T-G-AACA-TTT-ACA-TG-TAATCGGG--GGACAGTCT
gi|23896 : TTAA-AAAAG-CACACCA--A-AA------A-----CTACA-CTGTTTT-GTT-G-AACA-TTT-ACA-TG-TAATTCGG--GGACA-TTT
gi|23895 : TTAA-AAAAG-CACACCA--A-AA------A-----CTACA-CTGTTTT-GTT-G-AACA-TTT-ACA-TG-TAATTCGG--GGACA-TTT
gi|23898 : TTAA-AAAAA-AA---------AA------TA---CTTACA-CTGTTTT-G-T-G-AACA-TTT-ACA-TG-TAGTC-GG--GGATA-TTT
gi|23897 : TTAA-AAAAGCAACACCA--A-CA------AA---CT-ACA-CTGTTTT-G-T-G-AACT-TTA-ACATTG-TAATC-GG--GGACA-TTT
gi|23900 : TTTA-AAAAA-CCCGCCA--A-AA------AA---CTTACA-ATGTTTT-G-T-GAAACA-TTT-ACA-TG-TAATC-GGGAGAACA-TC
gi|23899 : TTTA-AAAAA-AACACCA--A-AA------AAAAACTCACA-CTGTTTTTG-T-G-A-CA-TTT-ACA-TG-TAATC-AT--GGACA-
gi|23901 : TTTA-AAAAA-CCCACCA--AAAA------AA---CTTAAA-CTGTTTT-G-TGG-AACA-TTTAACA-TG-TAATC--G--GGACA-TCT
gi|23902 : TTTA-AAAAA-AACACCA--A-AAAAACCCAA---CTTACA---G-TTT-G-T-G-AACATTTT-ACG-TG-TAATC-GG--TGACA-TCT
gi|23903 : AA-AAAAA-AACAAAA--A-AA------AA---A--AAA-CAGTTTT-G-T-G-AACA-TTT-ACA-TG-CAATC-GG--GGACA-TCT
gi|23904 : -AAGAA-AACACCA--A-AA------AA---CTTACA-CTGTTAT-T-T-G-AACA-TTT-ACA-TGTTAATC-GG--GGACA-TCT
gi|23905 : AAA-AAC-CCACCA-AA------AA---CTTAAAACTGTTTT-GTT-G-AACA-TTT-ACA-TG-T-ATC-----GGACA-
gi|23906 : ACA-CTATTTT-G-T-G-AACA-TTT-ACA-TG-TAATC-G
Alignments
lowQualScore : 1111111
lowQualScore : 2 2 33 2 2 3333333 2 5 7 2 2 5 2 2 5 2 33 2
lowQualScore : . . .. . . ....... . . . . . . . . . . .. .
lowQualScore : 9 7 77 7 7 1111111 5 0 5 5 5 0 5 5 0 5 77 7
consensus : TTAA-AAAAA-AAC--ACCAA-AA-AA------CTTACA-CTGTTTT-G-T-G-AACATTT-ACA-TG-TAA-TC-GG--GGACA-TCT
Reference ( family-952 ) : TTAA-AAAAA-AAC--ACCAA-AA-AA------CTTACA-CTGTTTT-G-T-G-AACATTT-ACA-TG-TAA-TC-GG--GGACA-TCT
gi|23891 : TTAA-AAAAA-AAC--ACCAA-AA-AA------CTTACA-CTGTTTT-G-T-G-AACATTT-ACA-TG-TAA-TT-GG--GGACA-TCT
gi|23892 : TTAA-AAAAA-AAC--ACCAA-AA-AA------CTTACA-CAGTTTT-G-T-G-AACATTT-ACA-TG-TAA-TC-GG--GGACA-TCT
gi|23893 : TTAA-AAAAA-CAA--ACCAA-AA-AA------CTTACA-CTGTTTT-G-T-G-AACATTT-ACA-TG-TGA-TC-GG--GGACA-TCT
gi|23894 : TTAAGAAAAA-AAC--ACCAA-AATAA------CTTACA-CTGTTTTGG-T-G-AACATTT-ACA-TG-TAA-TCGGG--GGACAGTCT
gi|23895 : TTAA-AAAAG-CAC--ACCAA-AA-A--------CTACA-CTGTTTT-GTT-G-AACATTT-ACA-TG-TAATTC-GG--GGACA-TTT
gi|23896 : TTAA-AAAAG-CAC--ACCAA-AA-A--------CTACA-CTGTTTT-GTT-G-AACATTT-ACA-TG-TAATTC-GG--GGACA-TTT
gi|23897 : TTAA-AAAAGCAAC--ACCAA-CA-AA------CT-ACA-CTGTTTT-G-T-G-AACTTTA-ACATTG-TAA-TC-GG--GGACA-TTT
gi|23898 : TTAA-AAAAA-AA---------AA-TA------CTTACA-CTGTTTT-G-T-G-AACATTT-ACA-TG-TAG-TC-GG--GGATA-TTT
gi|23899 : TTTA-AAAAA-AAC--ACCAA-AA-AAAAA---CTCACA-CTGTTTTTG-T-G-A-CATTT-ACA-TG-TAA-TC-AT--GGACA-
gi|23900 : TTTA-AAAAA-CCC--GCCAA-AA-AA------CTTACA-ATGTTTT-G-T-GAAACATTT-ACA-TG-TAA-TC-GGGAGAACA-TC
gi|23901 : TTTA-AAAAA-CCC--ACCAAAAA-AA------CTTAAA-CTGTTTT-G-TGG-AACATTTAACA-TG-TAA-TC--G--GGACA-TCT
gi|23902 : TTTA-AAAAA-AAC--ACCAA-AA-AAACCCAACTTACA---GTTT--G-T-G-AACATTTTACG-TG-TAA-TC-GG--TGACA-TCT
gi|23903 : AA-AAAAA-AAC--AAAAA-AA-AA------A--AAA-CAGTTTT-G-T-G-AACATTT-ACA-TG-CAA-TC-GG--GGACA-TCT
gi|23904 : -AAGAA-AAC--ACCAA-AA-AA------CTTACA-CTGTTAT-T-T-G-AACATTT-ACA-TGTTAA-TC-GG--GGACA-TCT
gi|23905 : AAA-AACCCACCAA-AA-A-------CTTAAAACTGTTTT-GTT-G-AACATTT-ACA-TG-T-A-TC-----GGACA-
gi|23906 : ACA-CTATTTT-G-T-G-AACATTT-ACA-TG-TAA-TC-G
Alignments
lowQualScore : 1111111
lowQualScore : 2 2 33 2 2 3333333 2 5 7 2 2 5 2 2 5 2 33 2
lowQualScore : . . .. . . ....... . . . . . . . . . . .. .
lowQualScore : 9 7 77 7 7 1111111 5 0 5 5 5 0 5 5 0 5 77 7
consensus : TTAA-AAAAA-AAC--ACCAA-AA-AA------CTTACA-CTGTTTT-G-T-G-AACATTT-ACA-TG-TAA-TC-GG--GGACA-TCT
Reference ( family-952 ) : TTAA-AAAAA-AAC--ACCAA-AA-AA------CTTACA-CTGTTTT-G-T-G-AACATTT-ACA-TG-TAA-TC-GG--GGACA-TCT
gi|23891 : TTAA-AAAAA-AAC--ACCAA-AA-AA------CTTACA-CTGTTTT-G-T-G-AACATTT-ACA-TG-TAA-TT-GG--GGACA-TCT
gi|23892 : TTAA-AAAAA-AAC--ACCAA-AA-AA------CTTACA-CAGTTTT-G-T-G-AACATTT-ACA-TG-TAA-TC-GG--GGACA-TCT
gi|23893 : TTAA-AAAAA-CAA--ACCAA-AA-AA------CTTACA-CTGTTTT-G-T-G-AACATTT-ACA-TG-TGA-TC-GG--GGACA-TCT
gi|23894 : TTAAGAAAAA-AAC--ACCAA-AATAA------CTTACA-CTGTTTTGG-T-G-AACATTT-ACA-TG-TAA-TCGGG--GGACAGTCT
gi|23895 : TTAA-AAAAG-CAC--ACCAA-AA-A--------CTACA-CTGTTTT-GTT-G-AACATTT-ACA-TG-TAATTC-GG--GGACA-TTT
gi|23896 : TTAA-AAAAG-CAC--ACCAA-AA-A--------CTACA-CTGTTTT-GTT-G-AACATTT-ACA-TG-TAATTC-GG--GGACA-TTT
gi|23897 : TTAA-AAAAGCAAC--ACCAA-CA-AA------CT-ACA-CTGTTTT-G-T-G-AACTTTA-ACATTG-TAA-TC-GG--GGACA-TTT
gi|23898 : TTAA-AAAAA-AA---------AA-TA------CTTACA-CTGTTTT-G-T-G-AACATTT-ACA-TG-TAG-TC-GG--GGATA-TTT
gi|23899 : TTTA-AAAAA-AAC--ACCAA-AA-AAAAA---CTCACA-CTGTTTTTG-T-G-A-CATTT-ACA-TG-TAA-TC-AT--GGACA-
gi|23900 : TTTA-AAAAA-CCC--GCCAA-AA-AA------CTTACA-ATGTTTT-G-T-GAAACATTT-ACA-TG-TAA-TC-GGGAGAACA-TC
gi|23901 : TTTA-AAAAA-CCC--ACCAAAAA-AA------CTTAAA-CTGTTTT-G-TGG-AACATTTAACA-TG-TAA-TC--G--GGACA-TCT
gi|23902 : TTTA-AAAAA-AAC--ACCAA-AA-AAACCCAACTTACA---GTTT--G-T-G-AACATTTTACG-TG-TAA-TC-GG--TGACA-TCT
gi|23903 : AA-AAAAA-AAC--AAAAA-AA-AA------A--AAA-CAGTTTT-G-T-G-AACATTT-ACA-TG-CAA-TC-GG--GGACA-TCT
gi|23904 : -AAGAA-AAC--ACCAA-AA-AA------CTTACA-CTGTTAT-T-T-G-AACATTT-ACA-TGTTAA-TC-GG--GGACA-TCT
gi|23905 : AAA-AACCCACCAA-AA-A-------CTTAAAACTGTTTT-GTT-G-AACATTT-ACA-TG-T-A-TC-----GGACA-
gi|23906 : ACA-CTATTTT-G-T-G-AACATTT-ACA-TG-TAA-TC-G
blockSeqs : G C CC A T AACCCAA A G T G A A T T T G GA G
blockSeqs : . . . . . AAAA . T T . . T . . T . . .
blockSeqs : . . . . . A . . T . . . . . . . . .
blockSeqs : . . . . . A . . . . . . . . . . . .
blockSeqs : . . . . . A . . . . . . . . . . . .
blockSeqs : . . . . . A . . . . . . . . . . . .
blockSeqs : . . . . . A . . . . . . . . . . . .
blockSeqs : . . . . . A . . . . . . . . . . . .
blockSeqs : . . . . . A . . . . . . . . . . . .
blockSeqs : . . . . . A . . . . . . . . . . . .
blockSeqs : . . . . . A . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . .
blockSeqCons :
originalCons : TTAA-AAAAA-AAC--ACCAA-AA-AA------CTTACA-CTGTTTT-G-T-G-AACATTT-ACA-TG-TAA-TC-GG--GGACA-TCT
finalCons : TTAA-AAAAA-AAC--ACCAA-AA-AA------CTTACA-CTGTTTT-G-T-G-AACATTT-ACA-TG-TAA-TC-GG--GGACA-TCT
Alignments
lowQualScore : 1111111
lowQualScore : 2 2 33 2 2 3333333 2 5 7 2 2 5 2 2 5 2 33 2
lowQualScore : . . .. . . ....... . . . . . . . . . . .. .
lowQualScore : 9 7 77 7 7 1111111 5 0 5 5 5 0 5 5 0 5 77 7
consensus : TTAA-AAAAA-AAC--ACCAA-AA-AA------CTTACA-CTGTTTT-G-T-G-AACATTT-ACA-TG-TAA-TC-GG--GGACA-TCT
Reference ( family-952 ) : TTAA-AAAAA-AAC--ACCAA-AA-AA------CTTACA-CTGTTTT-G-T-G-AACATTT-ACA-TG-TAA-TC-GG--GGACA-TCT
gi|23891 : TTAA-AAAAA-AAC--ACCAA-AA-AA------CTTACA-CTGTTTT-G-T-G-AACATTT-ACA-TG-TAA-TT-GG--GGACA-TCT
gi|23892 : TTAA-AAAAA-AAC--ACCAA-AA-AA------CTTACA-CAGTTTT-G-T-G-AACATTT-ACA-TG-TAA-TC-GG--GGACA-TCT
gi|23893 : TTAA-AAAAA-CAA--ACCAA-AA-AA------CTTACA-CTGTTTT-G-T-G-AACATTT-ACA-TG-TGA-TC-GG--GGACA-TCT
gi|23894 : TTAAGAAAAA-AAC--ACCAA-AATAA------CTTACA-CTGTTTTGG-T-G-AACATTT-ACA-TG-TAA-TCGGG--GGACAGTCT
gi|23895 : TTAA-AAAAG-CAC--ACCAA-AA-A--------CTACA-CTGTTTT-GTT-G-AACATTT-ACA-TG-TAATTC-GG--GGACA-TTT
gi|23896 : TTAA-AAAAG-CAC--ACCAA-AA-A--------CTACA-CTGTTTT-GTT-G-AACATTT-ACA-TG-TAATTC-GG--GGACA-TTT
gi|23897 : TTAA-AAAAGCAAC--ACCAA-CA-AA------CT-ACA-CTGTTTT-G-T-G-AACTTTA-ACATTG-TAA-TC-GG--GGACA-TTT
gi|23898 : TTAA-AAAAA-AA---------AA-TA------CTTACA-CTGTTTT-G-T-G-AACATTT-ACA-TG-TAG-TC-GG--GGATA-TTT
gi|23899 : TTTA-AAAAA-AAC--ACCAA-AA-AAAAA---CTCACA-CTGTTTTTG-T-G-A-CATTT-ACA-TG-TAA-TC-AT--GGACA-
gi|23900 : TTTA-AAAAA-CCC--GCCAA-AA-AA------CTTACA-ATGTTTT-G-T-GAAACATTT-ACA-TG-TAA-TC-GGGAGAACA-TC
gi|23901 : TTTA-AAAAA-CCC--ACCAAAAA-AA------CTTAAA-CTGTTTT-G-TGG-AACATTTAACA-TG-TAA-TC--G--GGACA-TCT
gi|23902 : TTTA-AAAAA-AAC--ACCAA-AA-AAACCCAACTTACA---GTTT--G-T-G-AACATTTTACG-TG-TAA-TC-GG--TGACA-TCT
gi|23903 : AA-AAAAA-AAC--AAAAA-AA-AA------A--AAA-CAGTTTT-G-T-G-AACATTT-ACA-TG-CAA-TC-GG--GGACA-TCT
gi|23904 : -AAGAA-AAC--ACCAA-AA-AA------CTTACA-CTGTTAT-T-T-G-AACATTT-ACA-TGTTAA-TC-GG--GGACA-TCT
gi|23905 : AAA-AACCCACCAA-AA-A-------CTTAAAACTGTTTT-GTT-G-AACATTT-ACA-TG-T-A-TC-----GGACA-
gi|23906 : ACA-CTATTTT-G-T-G-AACATTT-ACA-TG-TAA-TC-G