lowQualScore : 1111111111111 11111111
lowQualScore : 3 3 3 3 555 2 33 2 888888 5555555555555 2 2 0 5 2 2 88888888 2 88 5 5 99999999 6 5
lowQualScore : . . . . ... . .. . ...... ............. . . . . . . ........ . .. . . ........ . .
lowQualScore : 1 1 1 1 000 9 99 9 222222 7777777777777 9 9 9 7 7 7 00000000 7 99 3 3 77777777 0 3
consensus : AAG-TTATT-AAT-T-CT---AT-C--GA-GGTA------AT-------------T-CC-CGCCAT-GTC-C-ACTGTTT--------G-TCG-CACTTA-TTG-AGCA--------ATGCACGG-GATTT
Reference ( gi|110171 ) : AAG-TTATT-AAT-T-CT---AT-C--GA-GGTA------AT-------------T-CC-CGTCAT-GTC-C-ACTGTTT--------G-TCA-CACTTA-TTG-AGCA--------ATGCATGG-GATTT
gi|110172 : AAG-TTATT-AAT-T-CG---AT-C--AA-GGTA-------T-------------T-CC-CGTCAT-GTC-C-ACTGTTT--------G-TCG-CACTTA-TTG-AGCA--------ATGCACGG-GATTT
gi|110173 : AAG-TTATT-AAT-T-CT---ATTC--AA-GGTA------AT-------------T-CC-CGTCAT-GTC-C-ACTGTTT--------G-TCG-CACTTA-TTGCAGTA--------ATGCACGG-GATTT
gi|110168 : AAG-TTATT-AAT-T-CT---AT-C--GA-AGTA------AT-------------T-CC-CGCAAT-GTC-C-ACCGTTT--------G-TCT-CACTTA-TTG-AGCA--------ATGCACGG-GATTT
gi|110175 : AAG-TTATTTAAT-T-CT---AT-C--AA-GGTA------AT-------------TACC-CGTCATCGTC-C-ACTGTTT--------G-TCG-CACTTATTTG-AGCA--------ATGCACGG-GATT
gi|110169 : AAG-TTATT-AAT-T-CT---AT-C--GA-AGTA------AT-------------T-CC-CGCAAT-GTC-C-ACCGTTTG-------G-TCT-CACTTA-TTG-AGCA--------ATGCACGGAAATTT
gi|110177 : AAG-TTATT-AAT-T-CT---AT-C--AA-GGTA------AT-------------G-CC-CGTCAT-GTC-C-CCCGTTT--------T-TCG-CACTTA-TTG-AGCAATAATTATATGCACGG-GATTT
gi|110176 : AAG-TTATT-AGT-T-CT---GT-C--AA-GGTA------AT-------------T-CC-CTCCAT-GTC-C-AGTGTTT--------G-TTG-CACTTA-TTT-AGCA--------ATGCACAG-GATTT
gi|110178 : AAGCTTATT-AAT-TTCG---AT-C--AA-GGTA------AT-------------T-CCGCGTCATCGTC-CGACTGTTT--------G-TCGGCACTTA-TTG-AGCA--------ATGCACGG-GCTTT
gi|110174 : AAG-TTATT-AATCT-CT---AT-TCAGATGGTA------AT-------------T-CC-CG-CA--GTC-C-ACTGTTT--------G-TCG-CACTTATTTGCAGTA--------ATGCACGG-GATTT
gi|110179 : AAA-TTATT-CAT-T-CT---AT-C--AA-GGTA------ATAGTGGTATATAATT-CC-CGTCGT-TTC-C-ACTGTTTCCAT----G-TTG-CACTTA-TTG-AGCA--------ATGCACGG-GATTT
gi|110170 : AAG-TTATT-AAT-T-CCTAAAT-C--GA-AGTA-------T-------------T-CC-CGCAAT-GTCTC-ACCGTTT--------GGTCT-CACTTA-TTG-AGCA--------ATGCACGGAAATTT
gi|110180 : AG-TTATT-GAT-T-CT---AT-C--AA-GGTACATGTAAT-------------T-TC-CGCCAT-GTC-A-AGTGTTT--------G-TCA-CACTTG-TTT-ATCA--------ATGCACGG-GATTT
gi|110181 : G-TTATC-AAT-T-TT---AT-T--GA-GGTA------AT-------------C-CT-CGTCAT-GTT-C-AGTGTTT--------G-TTG-CACTTG-TTC-AGCA--------ATGCACAG-GATTT
gi|110182 : ---AT-T--GA-GGCA------AT-------------T-CC-TGCCAT-GCT-C-AGTGTTTTCACTTTTG-TCA-CACTTT-TTC-AGCA--------ATGCACAG-GCTTT
gi|110183 : -C-ACTGTTT--------G-TCG-CACTTA-TTG-AGCA--------ATGCACAG-GACTT
Alignments
lowQualScore : 1111111111111 11111111
lowQualScore : 2 2 2 2 444 2 33 2 777777 4444444444444 2 2 5 2 2 66666666 2 2 5 5 99999999 5
lowQualScore : . . . . ... . .. . ...... ............. . . . . . ........ . . . . ........ .
lowQualScore : 9 9 9 9 777 7 77 7 777777 7777777777777 7 7 3 5 5 99999999 5 5 0 0 11111111 0
consensus : AAG-TTATT-AAT-T-CT---AT-C--GA-GGTA------AT-------------T-CC-CGCCAT-GTC-C-ACTGTTT--------G-TCG-CACTTA-TTG-AGCA--------ATGCACGG-GATTT
Reference ( family-950 ) : AAG-TTATT-AAT-T-CT---AT-C--GA-GGTA------AT-------------T-CC-CGCCAT-GTC-C-ACTGTTT--------G-TCG-CACTTA-TTG-AGCA--------ATGCACGG-GATTT
gi|110168 : AAG-TTATT-AAT-T-CT---AT-C--GA-AGTA------AT-------------T-CC-CGCAAT-GTC-C-ACCGTTT--------G-TCT-CACTTA-TTG-AGCA--------ATGCACGG-GATTT
gi|110169 : AAG-TTATT-AAT-T-CT---AT-C--GA-AGTA------AT-------------T-CC-CGCAAT-GTC-C-ACCGTTTG-------G-TCT-CACTTA-TTG-AGCA--------ATGCACGGAAATTT
gi|110170 : AAG-TTATT-AAT-T-CCTAAAT-C--GA-AGTA-------T-------------T-CC-CGCAAT-GTCTC-ACCGTTT--------GGTCT-CACTTA-TTG-AGCA--------ATGCACGGAAATTT
gi|110171 : AAG-TTATT-AAT-T-CT---AT-C--GA-GGTA------AT-------------T-CC-CGTCAT-GTC-C-ACTGTTT--------G-TCA-CACTTA-TTG-AGCA--------ATGCATGG-GATTT
gi|110172 : AAG-TTATT-AAT-T-CG---AT-C--AA-GGTA-------T-------------T-CC-CGTCAT-GTC-C-ACTGTTT--------G-TCG-CACTTA-TTG-AGCA--------ATGCACGG-GATTT
gi|110173 : AAG-TTATT-AAT-T-CT---ATTC--AA-GGTA------AT-------------T-CC-CGTCAT-GTC-C-ACTGTTT--------G-TCG-CACTTA-TTGCAGTA--------ATGCACGG-GATTT
gi|110174 : AAG-TTATT-AATCT-CT---AT-TCAGATGGTA------AT-------------T-CC-CGC-A--GTC-C-ACTGTTT--------G-TCG-CACTTATTTGCAGTA--------ATGCACGG-GATTT
gi|110175 : AAG-TTATTTAAT-T-CT---AT-C--AA-GGTA------AT-------------TACC-CGTCATCGTC-C-ACTGTTT--------G-TCG-CACTTATTTG-AGCA--------ATGCACGG-GATT
gi|110176 : AAG-TTATT-AGT-T-CT---GT-C--AA-GGTA------AT-------------T-CC-CTCCAT-GTC-C-AGTGTTT--------G-TTG-CACTTA-TTT-AGCA--------ATGCACAG-GATTT
gi|110177 : AAG-TTATT-AAT-T-CT---AT-C--AA-GGTA------AT-------------G-CC-CGTCAT-GTC-C-CCCGTTT--------T-TCG-CACTTA-TTG-AGCAATAATTATATGCACGG-GATTT
gi|110178 : AAGCTTATT-AAT-TTCG---AT-C--AA-GGTA------AT-------------T-CCGCGTCATCGTC-CGACTGTTT--------G-TCGGCACTTA-TTG-AGCA--------ATGCACGG-GCTTT
gi|110179 : AAA-TTATT-CAT-T-CT---AT-C--AA-GGTA------ATAGTGGTATATAATT-CC-CGTCGT-TTC-C-ACTGTTTCCAT----G-TTG-CACTTA-TTG-AGCA--------ATGCACGG-GATTT
gi|110180 : AG-TTATT-GAT-T-CT---AT-C--AA-GGTACATGTAAT-------------T-TC-CGCCAT-GTC-A-AGTGTTT--------G-TCA-CACTTG-TTT-ATCA--------ATGCACGG-GATTT
gi|110181 : G-TTATC-AAT-T-TT---AT-T--GA-GGTA------AT-------------C-CT-CGTCAT-GTT-C-AGTGTTT--------G-TTG-CACTTG-TTC-AGCA--------ATGCACAG-GATTT
gi|110182 : ---AT-T--GA-GGCA------AT-------------T-CC-TGCCAT-GCT-C-AGTGTTTTCACTTTTG-TCA-CACTTT-TTC-AGCA--------ATGCACAG-GCTTT
gi|110183 : -C-ACTGTTT--------G-TCG-CACTTA-TTG-AGCA--------ATGCACAG-GACTT
Alignments
lowQualScore : 1111111111111 11111111
lowQualScore : 2 2 2 2 444 2 33 2 777777 4444444444444 2 2 5 2 2 66666666 2 2 5 5 99999999 5
lowQualScore : . . . . ... . .. . ...... ............. . . . . . ........ . . . . ........ .
lowQualScore : 9 9 9 9 777 7 77 7 777777 7777777777777 7 7 3 5 5 99999999 5 5 0 0 11111111 0
consensus : AAG-TTATT-AAT-T-CT---AT-C--GA-GGTA------AT-------------T-CC-CGCCAT-GTC-C-ACTGTTT--------G-TCG-CACTTA-TTG-AGCA--------ATGCACGG-GATTT
Reference ( family-950 ) : AAG-TTATT-AAT-T-CT---AT-C--GA-GGTA------AT-------------T-CC-CGCCAT-GTC-C-ACTGTTT--------G-TCG-CACTTA-TTG-AGCA--------ATGCACGG-GATTT
gi|110168 : AAG-TTATT-AAT-T-CT---AT-C--GA-AGTA------AT-------------T-CC-CGCAAT-GTC-C-ACCGTTT--------G-TCT-CACTTA-TTG-AGCA--------ATGCACGG-GATTT
gi|110169 : AAG-TTATT-AAT-T-CT---AT-C--GA-AGTA------AT-------------T-CC-CGCAAT-GTC-C-ACCGTTTG-------G-TCT-CACTTA-TTG-AGCA--------ATGCACGGAAATTT
gi|110170 : AAG-TTATT-AAT-T-CCTAAAT-C--GA-AGTA-------T-------------T-CC-CGCAAT-GTCTC-ACCGTTT--------GGTCT-CACTTA-TTG-AGCA--------ATGCACGGAAATTT
gi|110171 : AAG-TTATT-AAT-T-CT---AT-C--GA-GGTA------AT-------------T-CC-CGTCAT-GTC-C-ACTGTTT--------G-TCA-CACTTA-TTG-AGCA--------ATGCATGG-GATTT
gi|110172 : AAG-TTATT-AAT-T-CG---AT-C--AA-GGTA-------T-------------T-CC-CGTCAT-GTC-C-ACTGTTT--------G-TCG-CACTTA-TTG-AGCA--------ATGCACGG-GATTT
gi|110173 : AAG-TTATT-AAT-T-CT---ATTC--AA-GGTA------AT-------------T-CC-CGTCAT-GTC-C-ACTGTTT--------G-TCG-CACTTA-TTGCAGTA--------ATGCACGG-GATTT
gi|110174 : AAG-TTATT-AATCT-CT---AT-TCAGATGGTA------AT-------------T-CC-CGC-A--GTC-C-ACTGTTT--------G-TCG-CACTTATTTGCAGTA--------ATGCACGG-GATTT
gi|110175 : AAG-TTATTTAAT-T-CT---AT-C--AA-GGTA------AT-------------TACC-CGTCATCGTC-C-ACTGTTT--------G-TCG-CACTTATTTG-AGCA--------ATGCACGG-GATT
gi|110176 : AAG-TTATT-AGT-T-CT---GT-C--AA-GGTA------AT-------------T-CC-CTCCAT-GTC-C-AGTGTTT--------G-TTG-CACTTA-TTT-AGCA--------ATGCACAG-GATTT
gi|110177 : AAG-TTATT-AAT-T-CT---AT-C--AA-GGTA------AT-------------G-CC-CGTCAT-GTC-C-CCCGTTT--------T-TCG-CACTTA-TTG-AGCAATAATTATATGCACGG-GATTT
gi|110178 : AAGCTTATT-AAT-TTCG---AT-C--AA-GGTA------AT-------------T-CCGCGTCATCGTC-CGACTGTTT--------G-TCGGCACTTA-TTG-AGCA--------ATGCACGG-GCTTT
gi|110179 : AAA-TTATT-CAT-T-CT---AT-C--AA-GGTA------ATAGTGGTATATAATT-CC-CGTCGT-TTC-C-ACTGTTTCCAT----G-TTG-CACTTA-TTG-AGCA--------ATGCACGG-GATTT
gi|110180 : AG-TTATT-GAT-T-CT---AT-C--AA-GGTACATGTAAT-------------T-TC-CGCCAT-GTC-A-AGTGTTT--------G-TCA-CACTTG-TTT-ATCA--------ATGCACGG-GATTT
gi|110181 : G-TTATC-AAT-T-TT---AT-T--GA-GGTA------AT-------------C-CT-CGTCAT-GTT-C-AGTGTTT--------G-TTG-CACTTG-TTC-AGCA--------ATGCACAG-GATTT
gi|110182 : ---AT-T--GA-GGCA------AT-------------T-CC-TGCCAT-GCT-C-AGTGTTTTCACTTTTG-TCA-CACTTT-TTC-AGCA--------ATGCACAG-GCTTT
gi|110183 : -C-ACTGTTT--------G-TCG-CACTTA-TTG-AGCA--------ATGCACAG-GACTT
blockSeqs : C T C T TAA T CA T CATGTA AGTGGTATATAAT A G C T G TCACTTTT G G T C ATAATTAT A
blockSeqs : . . . . . . . . . . . . C . . CCAT . . T C . A
blockSeqs : . . . . . . . . . . . . . . . G . . . . . .
blockSeqs : . . . . . . . . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . .
blockSeqCons :
originalCons : AAG-TTATT-AAT-T-CT---AT-C--GA-GGTA------AT-------------T-CC-CGCCAT-GTC-C-ACTGTTT--------G-TCG-CACTTA-TTG-AGCA--------ATGCACGG-GATTT
finalCons : AAG-TTATT-AAT-T-CT---AT-C--GA-GGTA------AT-------------T-CC-CGCCAT-GTC-C-ACTGTTT--------G-TCG-CACTTA-TTG-AGCA--------ATGCACGG-GATTT
Alignments
lowQualScore : 1111111111111 11111111
lowQualScore : 2 2 2 2 444 2 33 2 777777 4444444444444 2 2 5 2 2 66666666 2 2 5 5 99999999 5
lowQualScore : . . . . ... . .. . ...... ............. . . . . . ........ . . . . ........ .
lowQualScore : 9 9 9 9 777 7 77 7 777777 7777777777777 7 7 3 5 5 99999999 5 5 0 0 11111111 0
consensus : AAG-TTATT-AAT-T-CT---AT-C--GA-GGTA------AT-------------T-CC-CGCCAT-GTC-C-ACTGTTT--------G-TCG-CACTTA-TTG-AGCA--------ATGCACGG-GATTT
Reference ( family-950 ) : AAG-TTATT-AAT-T-CT---AT-C--GA-GGTA------AT-------------T-CC-CGCCAT-GTC-C-ACTGTTT--------G-TCG-CACTTA-TTG-AGCA--------ATGCACGG-GATTT
gi|110168 : AAG-TTATT-AAT-T-CT---AT-C--GA-AGTA------AT-------------T-CC-CGCAAT-GTC-C-ACCGTTT--------G-TCT-CACTTA-TTG-AGCA--------ATGCACGG-GATTT
gi|110169 : AAG-TTATT-AAT-T-CT---AT-C--GA-AGTA------AT-------------T-CC-CGCAAT-GTC-C-ACCGTTTG-------G-TCT-CACTTA-TTG-AGCA--------ATGCACGGAAATTT
gi|110170 : AAG-TTATT-AAT-T-CCTAAAT-C--GA-AGTA-------T-------------T-CC-CGCAAT-GTCTC-ACCGTTT--------GGTCT-CACTTA-TTG-AGCA--------ATGCACGGAAATTT
gi|110171 : AAG-TTATT-AAT-T-CT---AT-C--GA-GGTA------AT-------------T-CC-CGTCAT-GTC-C-ACTGTTT--------G-TCA-CACTTA-TTG-AGCA--------ATGCATGG-GATTT
gi|110172 : AAG-TTATT-AAT-T-CG---AT-C--AA-GGTA-------T-------------T-CC-CGTCAT-GTC-C-ACTGTTT--------G-TCG-CACTTA-TTG-AGCA--------ATGCACGG-GATTT
gi|110173 : AAG-TTATT-AAT-T-CT---ATTC--AA-GGTA------AT-------------T-CC-CGTCAT-GTC-C-ACTGTTT--------G-TCG-CACTTA-TTGCAGTA--------ATGCACGG-GATTT
gi|110174 : AAG-TTATT-AATCT-CT---AT-TCAGATGGTA------AT-------------T-CC-CGC-A--GTC-C-ACTGTTT--------G-TCG-CACTTATTTGCAGTA--------ATGCACGG-GATTT
gi|110175 : AAG-TTATTTAAT-T-CT---AT-C--AA-GGTA------AT-------------TACC-CGTCATCGTC-C-ACTGTTT--------G-TCG-CACTTATTTG-AGCA--------ATGCACGG-GATT
gi|110176 : AAG-TTATT-AGT-T-CT---GT-C--AA-GGTA------AT-------------T-CC-CTCCAT-GTC-C-AGTGTTT--------G-TTG-CACTTA-TTT-AGCA--------ATGCACAG-GATTT
gi|110177 : AAG-TTATT-AAT-T-CT---AT-C--AA-GGTA------AT-------------G-CC-CGTCAT-GTC-C-CCCGTTT--------T-TCG-CACTTA-TTG-AGCAATAATTATATGCACGG-GATTT
gi|110178 : AAGCTTATT-AAT-TTCG---AT-C--AA-GGTA------AT-------------T-CCGCGTCATCGTC-CGACTGTTT--------G-TCGGCACTTA-TTG-AGCA--------ATGCACGG-GCTTT
gi|110179 : AAA-TTATT-CAT-T-CT---AT-C--AA-GGTA------ATAGTGGTATATAATT-CC-CGTCGT-TTC-C-ACTGTTTCCAT----G-TTG-CACTTA-TTG-AGCA--------ATGCACGG-GATTT
gi|110180 : AG-TTATT-GAT-T-CT---AT-C--AA-GGTACATGTAAT-------------T-TC-CGCCAT-GTC-A-AGTGTTT--------G-TCA-CACTTG-TTT-ATCA--------ATGCACGG-GATTT
gi|110181 : G-TTATC-AAT-T-TT---AT-T--GA-GGTA------AT-------------C-CT-CGTCAT-GTT-C-AGTGTTT--------G-TTG-CACTTG-TTC-AGCA--------ATGCACAG-GATTT
gi|110182 : ---AT-T--GA-GGCA------AT-------------T-CC-TGCCAT-GCT-C-AGTGTTTTCACTTTTG-TCA-CACTTT-TTC-AGCA--------ATGCACAG-GCTTT
gi|110183 : -C-ACTGTTT--------G-TCG-CACTTA-TTG-AGCA--------ATGCACAG-GACTT