lowQualScore : 1 1
lowQualScore : 2 2 444 5 999 5 0 0 2 99999 4 9999
lowQualScore : . . ... . ... . . . . ..... . ....
lowQualScore : 7 7 777 0 333 3 5 9 9 00000 1 6666
consensus : CAATATTTTCACAC-TTGACCAAGA-TTATGTA---ACGGATT---AAATCCCTCGC-CACCGTTGCAC-GC---GACGGCCGCC----CAGGTAATGTTTGTTTA
Reference ( gi|117156 ) : CAATATTTTCACAC-TTGACCAAGA-TTATGTA---ACAGATT---AAATCCCTCGC-CACCATTACAT-GC---AACAGCCGCC----CAGGTAATGTTTGTTTA
gi|117157 : CAATATTTTCACAC-TTGACCAAGA-TTATGTA---ACGGATT---AAATCCCTCGC-CACTGTTGCAC-AC---AACGGCCACC----CAGGTAATGTTTGTTTA
gi|117158 : CAATATTTTCACAC-TTGACCAAGA-TTATGTATTAACAGATT---GAATCCCTCAC-CACCTCTGCAT-GA---GGCAGCCGCC----CAGGTAATGTATGTTTA
gi|117159 : CAATATTTTCACAC-TTGACCAAGA-TTATGTA---ACGGATT---AAATCCCTCAT-CACCTTTGCAT-GA---GACGGCC-TC----CAAGTAATGTTTGTTTA
gi|117163 : CAATATTTTCACAC-TTAACCAAGA-TTATGTA---ACGGATT---AAATCCCTCGC-CA-CATT---T-GC---AATGACCGCCTGGGCGGGTAATGTTTGTTTA
gi|117161 : CAATATTTTCACAC-TTGACCAAGA-TTAGATA---ACGGGTTTAAAAATCCCCCGC-CACCGTTGCAC-GC---GACAGCTGCA----CAGGTAATGTTTATTTA
gi|117162 : CAATATTTTCACAC-TTGACCAAGA-TTAGATA---ACGGGTTTAAAAATCCCCCGC-CACCGTTGCAC-GC---GACAACTGCA----CAGATAATGTTTATTTA
gi|117164 : CAATATTTTCACAC-TTGACCAAGA-TTATGTA---ACGGATT---CAATCCCTCGCTTACT-TTGCAC-GA---GACAGCCGCC----CAGGT
gi|117165 : CAATATTTTCACAT-TTAACCAAAA-TTACATA---ACGGATT---AAATCCCTCGC-CACCTTTGCAT-AC---AACTGCTGCC----CAGG
gi|117166 : CAATATTTTCACAC-TTGACCACGA-TTATGTA---ATA-ATT---AAG--CCTCGC-CACGA--GAAT-G----------CGCC----CAGGTAATGTTTGCTTA
gi|117167 : CAATATTTTCACAC-TTAACCATGA-TTATGTA---ACGGATT---AAATCCCTCGC-CACCTTT
gi|117168 : CAATATTTTCACACTTTAACCAAGACTTATGTA---AGGAAT-----AATCCCTCGC-CACCTTT---T-GCTATGACTGCTGCCT---C--GTAATGTTTGTT
gi|117160 : CAATTATTACACAC-TTAACCAAGA-TTA--TA---ACAAGAT---AAATCCCTCGCACAC--TTGCATAGG---AAT-GCCG-C----CAAGTAA-GTTTGTTTA
gi|117169 : ATATTTTCACAC-TTGACCAAGA-TTATGTA---AC-GATT---AAATCCCTTGC-TACCGTTGCTT-G
gi|117170 : TTTTCACAC-TTGACCAAGA-TCATGTA---ACAGATT---AAATCC-TCGC-CACCGTTGCAT-GC---GACAGCTGCC----CAGGTAATGTTTGTTTA
gi|117171 : ACAC-TTGACCAAGA-TTATGTA---ACTGATT---AAACCCCTCGC-CATCGTTGCAC-GC---GACAGCTGCC----CAGGTAATGTTTGTTTA
Alignments
lowQualScore : 2 2 444 888 2 77 3 1 5 0 8888
lowQualScore : . . ... ... . .. . . . . ....
lowQualScore : 5 5 444 888 5 66 4 9 1 4 9999
consensus : CAATATTTTCACAC-TTGACCAAGA-TTATGTA---ACGGATT---AAATCCCTCGC-CACC-NTTGCACGCGACGGCCGCC----CAGGTAATGTTTGTTTA
Reference ( family-949 ) : CAATATTTTCACAC-TTGACCAAGA-TTATGTA---ACGGATT---AAATCCCTCGC-CACC-GTTGCACGCGACGGCCGCC----CAGGTAATGTTTGTTTA
gi|117156 : CAATATTTTCACAC-TTGACCAAGA-TTATGTA---ACAGATT---AAATCCCTCGC-CACC-ATTACATGCAACAGCCGCC----CAGGTAATGTTTGTTTA
gi|117157 : CAATATTTTCACAC-TTGACCAAGA-TTATGTA---ACGGATT---AAATCCCTCGC-CACT-GTTGCACACAACGGCCACC----CAGGTAATGTTTGTTTA
gi|117158 : CAATATTTTCACAC-TTGACCAAGA-TTATGTATTAACAGATT---GAATCCCTCAC-CACC-TCTGCATGAGGCAGCCGCC----CAGGTAATGTATGTTTA
gi|117159 : CAATATTTTCACAC-TTGACCAAGA-TTATGTA---ACGGATT---AAATCCCTCAT-CACC-TTTGCATGAGACGGCC-TC----CAAGTAATGTTTGTTTA
gi|117160 : CAATTATTACACAC-TTAACCAAGA-TTA--TA---ACAAGAT---AAATCCCTCGCACAC---TTGCATAGGAATGCCG-C----CAAGTAA-GTTTGTTTA
gi|117161 : CAATATTTTCACAC-TTGACCAAGA-TTAGATA---ACGGGTTTAAAAATCCCCCGC-CACC-GTTGCACGCGACAGCTGCA----CAGGTAATGTTTATTTA
gi|117162 : CAATATTTTCACAC-TTGACCAAGA-TTAGATA---ACGGGTTTAAAAATCCCCCGC-CACC-GTTGCACGCGACAACTGCA----CAGATAATGTTTATTTA
gi|117163 : CAATATTTTCACAC-TTAACCAAGA-TTATGTA---ACGGATT---AAATCCCTCGC-CACA-TTTGCA----ATGACCGCCTGGGCGGGTAATGTTTGTTTA
gi|117164 : CAATATTTTCACAC-TTGACCAAGA-TTATGTA---ACGGATT---CAATCCCTCGC-TTAC-TTTGCACGAGACAGCCGCC----CAGGT
gi|117165 : CAATATTTTCACAT-TTAACCAAAA-TTACATA---ACGGATT---AAATCCCTCGC-CACC-TTTGCATACAACTGCTGCC----CAGG
gi|117166 : CAATATTTTCACAC-TTGACCACGA-TTATGTA---ATA-ATT---AAG--CCTCGC-CAC---------GAGAATGC-GCC----CAGGTAATGTTTGCTTA
gi|117167 : CAATATTTTCACAC-TTAACCATGA-TTATGTA---ACGGATT---AAATCCCTCGC-CACC-TTT
gi|117168 : CAATATTTTCACACTTTAACCAAGACTTATGTA---AGGAAT-----AATCCCTCGC-CACCTTTTGC-TATGACTGCTGCCT---C--GTAATGTTTGTT
gi|117169 : ATATTTTCACAC-TTGACCAAGA-TTATGTA---AC-GATT---AAATCCCTTGC-TACC-GTTGC
gi|117170 : TTTTCACAC-TTGACCAAGA-TCATGTA---ACAGATT---AAATCC-TCGC-CACC-GTTGCATGCGACAGCTGCC----CAGGTAATGTTTGTTTAttg
gi|117171 : ACAC-TTGACCAAGA-TTATGTA---ACTGATT---AAACCCCTCGC-CATC-GTTGCACGCGACAGCTGCC----CAGGTAATGTTTGTTTA
Alignments
lowQualScore : 2 2 444 888 44 3 1 5 0 8888
lowQualScore : . . ... ... .. . . . . ....
lowQualScore : 5 5 444 888 44 4 9 1 4 9999
consensus : CAATATTTTCACAC-TTGACCAAGA-TTATGTA---ACGGATT---AAATCCCTCGCCACC-NTTGCACGCGACGGCCGCC----CAGGTAATGTTTGTTTA
Reference ( family-949 ) : CAATATTTTCACAC-TTGACCAAGA-TTATGTA---ACGGATT---AAATCCCTCGCCACC-NTTGCACGCGACGGCCGCC----CAGGTAATGTTTGTTTA
gi|117156 : CAATATTTTCACAC-TTGACCAAGA-TTATGTA---ACAGATT---AAATCCCTCGCCACC-ATTACATGCAACAGCCGCC----CAGGTAATGTTTGTTTA
gi|117157 : CAATATTTTCACAC-TTGACCAAGA-TTATGTA---ACGGATT---AAATCCCTCGCCACT-GTTGCACACAACGGCCACC----CAGGTAATGTTTGTTTA
gi|117158 : CAATATTTTCACAC-TTGACCAAGA-TTATGTATTAACAGATT---GAATCCCTCACCACC-TCTGCATGAGGCAGCCGCC----CAGGTAATGTATGTTTA
gi|117159 : CAATATTTTCACAC-TTGACCAAGA-TTATGTA---ACGGATT---AAATCCCTCATCACC-TTTGCATGAGACGGCC-TC----CAAGTAATGTTTGTTTA
gi|117160 : CAATTATTACACAC-TTAACCAAGA-TTA--TA---ACAAGAT---AAATCCCTCG-CACA-CTTGCATAGGAATGCCG-C----CAAGTAA-GTTTGTTTA
gi|117161 : CAATATTTTCACAC-TTGACCAAGA-TTAGATA---ACGGGTTTAAAAATCCCCCGCCACC-GTTGCACGCGACAGCTGCA----CAGGTAATGTTTATTTA
gi|117162 : CAATATTTTCACAC-TTGACCAAGA-TTAGATA---ACGGGTTTAAAAATCCCCCGCCACC-GTTGCACGCGACAACTGCA----CAGATAATGTTTATTTA
gi|117163 : CAATATTTTCACAC-TTAACCAAGA-TTATGTA---ACGGATT---AAATCCCTCGCCACA-TTTGCA----ATGACCGCCTGGGCGGGTAATGTTTGTTTA
gi|117164 : CAATATTTTCACAC-TTGACCAAGA-TTATGTA---ACGGATT---CAATCCCTCGCTTAC-TTTGCACGAGACAGCCGCC----CAGGT
gi|117165 : CAATATTTTCACAT-TTAACCAAAA-TTACATA---ACGGATT---AAATCCCTCGCCACC-TTTGCATACAACTGCTGCC----CAGG
gi|117166 : CAATATTTTCACAC-TTGACCACGA-TTATGTA---ATA-ATT---AAG--CCTCGCCAC---------GAGAATGC-GCC----CAGGTAATGTTTGCTTA
gi|117167 : CAATATTTTCACAC-TTAACCATGA-TTATGTA---ACGGATT---AAATCCCTCGCCACC-TTT
gi|117168 : CAATATTTTCACACTTTAACCAAGACTTATGTA---AGGAAT-----AATCCCTCGCCACCTTTTGC-TATGACTGCTGCCT---C--GTAATGTTTGTT
gi|117169 : ATATTTTCACAC-TTGACCAAGA-TTATGTA---AC-GATT---AAATCCCTTGCTACC-GTTGC
gi|117170 : TTTTCACAC-TTGACCAAGA-TCATGTA---ACAGATT---AAATCC-TCGCCACC-GTTGCATGCGACAGCTGCC----CAGGTAATGTTTGTTTAttg
gi|117171 : ACAC-TTGACCAAGA-TTATGTA---ACTGATT---AAACCCCTCGCCATC-GTTGCACGCGACAGCTGCC----CAGGTAATGTTTGTTTA
Alignments
lowQualScore : 2 2 444 888 44 3 1 5 0 8888
lowQualScore : . . ... ... .. . . . . ....
lowQualScore : 5 5 444 888 44 4 9 1 4 9999
consensus : CAATATTTTCACAC-TTGACCAAGA-TTATGTA---ACGGATT---AAATCCCTCGCCACC-NTTGCACGCGACGGCCGCC----CAGGTAATGTTTGTTTA
Reference ( family-949 ) : CAATATTTTCACAC-TTGACCAAGA-TTATGTA---ACGGATT---AAATCCCTCGCCACC-NTTGCACGCGACGGCCGCC----CAGGTAATGTTTGTTTA
gi|117156 : CAATATTTTCACAC-TTGACCAAGA-TTATGTA---ACAGATT---AAATCCCTCGCCACC-ATTACATGCAACAGCCGCC----CAGGTAATGTTTGTTTA
gi|117157 : CAATATTTTCACAC-TTGACCAAGA-TTATGTA---ACGGATT---AAATCCCTCGCCACT-GTTGCACACAACGGCCACC----CAGGTAATGTTTGTTTA
gi|117158 : CAATATTTTCACAC-TTGACCAAGA-TTATGTATTAACAGATT---GAATCCCTCACCACC-TCTGCATGAGGCAGCCGCC----CAGGTAATGTATGTTTA
gi|117159 : CAATATTTTCACAC-TTGACCAAGA-TTATGTA---ACGGATT---AAATCCCTCATCACC-TTTGCATGAGACGGCC-TC----CAAGTAATGTTTGTTTA
gi|117160 : CAATTATTACACAC-TTAACCAAGA-TTA--TA---ACAAGAT---AAATCCCTCG-CACA-CTTGCATAGGAATGCCG-C----CAAGTAA-GTTTGTTTA
gi|117161 : CAATATTTTCACAC-TTGACCAAGA-TTAGATA---ACGGGTTTAAAAATCCCCCGCCACC-GTTGCACGCGACAGCTGCA----CAGGTAATGTTTATTTA
gi|117162 : CAATATTTTCACAC-TTGACCAAGA-TTAGATA---ACGGGTTTAAAAATCCCCCGCCACC-GTTGCACGCGACAACTGCA----CAGATAATGTTTATTTA
gi|117163 : CAATATTTTCACAC-TTAACCAAGA-TTATGTA---ACGGATT---AAATCCCTCGCCACA-TTTGCA----ATGACCGCCTGGGCGGGTAATGTTTGTTTA
gi|117164 : CAATATTTTCACAC-TTGACCAAGA-TTATGTA---ACGGATT---CAATCCCTCGCTTAC-TTTGCACGAGACAGCCGCC----CAGGT
gi|117165 : CAATATTTTCACAT-TTAACCAAAA-TTACATA---ACGGATT---AAATCCCTCGCCACC-TTTGCATACAACTGCTGCC----CAGG
gi|117166 : CAATATTTTCACAC-TTGACCACGA-TTATGTA---ATA-ATT---AAG--CCTCGCCAC---------GAGAATGC-GCC----CAGGTAATGTTTGCTTA
gi|117167 : CAATATTTTCACAC-TTAACCATGA-TTATGTA---ACGGATT---AAATCCCTCGCCACC-TTT
gi|117168 : CAATATTTTCACACTTTAACCAAGACTTATGTA---AGGAAT-----AATCCCTCGCCACCTTTTGC-TATGACTGCTGCCT---C--GTAATGTTTGTT
gi|117169 : ATATTTTCACAC-TTGACCAAGA-TTATGTA---AC-GATT---AAATCCCTTGCTACC-GTTGC
gi|117170 : TTTTCACAC-TTGACCAAGA-TCATGTA---ACAGATT---AAATCC-TCGCCACC-GTTGCATGCGACAGCTGCC----CAGGTAATGTTTGTTTAttg
gi|117171 : ACAC-TTGACCAAGA-TTATGTA---ACTGATT---AAACCCCTCGCCATC-GTTGCACGCGACAGCTGCC----CAGGTAATGTTTGTTTA
blockSeqs : T C TTA TAA TT C C G TGGG
blockSeqs : . . . TAA G T A A T
blockSeqs : . . . . T T A G .
blockSeqs : . . . . T T G T .
blockSeqs : . . . . C C C A .
blockSeqs : . . . . G C C A .
blockSeqs : . . . . G C A G .
blockSeqs : . . . . T T C A .
blockSeqs : . . . . T T A T .
blockSeqs : . . . . T T T T .
blockSeqs : . . . . T C C T .
blockSeqs : . . . . G . C A .
blockSeqs : . . . . G . . A .
blockSeqs : . . . . G
blockSeqs : . . . . .
blockSeqCons :
originalCons : CAATATTTTCACAC-TTGACCAAGA-TTATGTA---ACGGATT---AAATCCCTCGCCACC-NTTGCACGCGACGGCCGCC----CAGGTAATGTTTGTTTA
finalCons : CAATATTTTCACAC-TTGACCAAGA-TTATGTA---ACGGATT---AAATCCCTCGCCACC-NTTGCACGCGACGGCCGCC----CAGGTAATGTTTGTTTA
Alignments
lowQualScore : 2 2 444 888 44 3 1 5 0 8888
lowQualScore : . . ... ... .. . . . . ....
lowQualScore : 5 5 444 888 44 4 9 1 4 9999
consensus : CAATATTTTCACAC-TTGACCAAGA-TTATGTA---ACGGATT---AAATCCCTCGCCACC-NTTGCACGCGACGGCCGCC----CAGGTAATGTTTGTTTA
Reference ( family-949 ) : CAATATTTTCACAC-TTGACCAAGA-TTATGTA---ACGGATT---AAATCCCTCGCCACC-NTTGCACGCGACGGCCGCC----CAGGTAATGTTTGTTTA
gi|117156 : CAATATTTTCACAC-TTGACCAAGA-TTATGTA---ACAGATT---AAATCCCTCGCCACC-ATTACATGCAACAGCCGCC----CAGGTAATGTTTGTTTA
gi|117157 : CAATATTTTCACAC-TTGACCAAGA-TTATGTA---ACGGATT---AAATCCCTCGCCACT-GTTGCACACAACGGCCACC----CAGGTAATGTTTGTTTA
gi|117158 : CAATATTTTCACAC-TTGACCAAGA-TTATGTATTAACAGATT---GAATCCCTCACCACC-TCTGCATGAGGCAGCCGCC----CAGGTAATGTATGTTTA
gi|117159 : CAATATTTTCACAC-TTGACCAAGA-TTATGTA---ACGGATT---AAATCCCTCATCACC-TTTGCATGAGACGGCC-TC----CAAGTAATGTTTGTTTA
gi|117160 : CAATTATTACACAC-TTAACCAAGA-TTA--TA---ACAAGAT---AAATCCCTCG-CACA-CTTGCATAGGAATGCCG-C----CAAGTAA-GTTTGTTTA
gi|117161 : CAATATTTTCACAC-TTGACCAAGA-TTAGATA---ACGGGTTTAAAAATCCCCCGCCACC-GTTGCACGCGACAGCTGCA----CAGGTAATGTTTATTTA
gi|117162 : CAATATTTTCACAC-TTGACCAAGA-TTAGATA---ACGGGTTTAAAAATCCCCCGCCACC-GTTGCACGCGACAACTGCA----CAGATAATGTTTATTTA
gi|117163 : CAATATTTTCACAC-TTAACCAAGA-TTATGTA---ACGGATT---AAATCCCTCGCCACA-TTTGCA----ATGACCGCCTGGGCGGGTAATGTTTGTTTA
gi|117164 : CAATATTTTCACAC-TTGACCAAGA-TTATGTA---ACGGATT---CAATCCCTCGCTTAC-TTTGCACGAGACAGCCGCC----CAGGT
gi|117165 : CAATATTTTCACAT-TTAACCAAAA-TTACATA---ACGGATT---AAATCCCTCGCCACC-TTTGCATACAACTGCTGCC----CAGG
gi|117166 : CAATATTTTCACAC-TTGACCACGA-TTATGTA---ATA-ATT---AAG--CCTCGCCAC---------GAGAATGC-GCC----CAGGTAATGTTTGCTTA
gi|117167 : CAATATTTTCACAC-TTAACCATGA-TTATGTA---ACGGATT---AAATCCCTCGCCACC-TTT
gi|117168 : CAATATTTTCACACTTTAACCAAGACTTATGTA---AGGAAT-----AATCCCTCGCCACCTTTTGC-TATGACTGCTGCCT---C--GTAATGTTTGTT
gi|117169 : ATATTTTCACAC-TTGACCAAGA-TTATGTA---AC-GATT---AAATCCCTTGCTACC-GTTGC
gi|117170 : TTTTCACAC-TTGACCAAGA-TCATGTA---ACAGATT---AAATCC-TCGCCACC-GTTGCATGCGACAGCTGCC----CAGGTAATGTTTGTTTAttg
gi|117171 : ACAC-TTGACCAAGA-TTATGTA---ACTGATT---AAACCCCTCGCCATC-GTTGCACGCGACAGCTGCC----CAGGTAATGTTTGTTTA