lowQualScore : 66 5555 2 6 66 2 2 5 2 2 33 2 5 777 2 2 5 2 555 8888888 5 2
lowQualScore : .. .... . . .. . . . . . .. . . ... . . . . ... ....... . .
lowQualScore : 88 7777 7 0 33 9 9 7 9 9 99 9 7 222 9 9 7 9 000 4444444 7 9
consensus : TGAACTCTATTGAA--CTT----TAATAAT-GCCA--TTAA-AC-T-A-AC-AAA--TGTGAATCTGTC-TT-A-T-TTTTT-CG-ATTTCAAA-T-A---AT----A--AG-TG-TGGACAAA
Reference ( gi|95907 ) : TGAACTCTATTGAA--CTT----TAATAAT-GTCA--TTAA-AC-T-A-AC-AAA--TGTGAATCTGTC-TT-A-T-TTTTT-CG-ATTTCAAA-T-A---AT----A--AG-TG-TGGACAAA
gi|95908 : TGAACTCTATTGAA--TTT----TAATATT-GCCG--TTAA-AC-T-A-AC-AAA--TGTGAATCTGTC-TT-A-T-TTTTT-CG-ATTTCAAA-T-A---AT----A--AG-TG-TGGACAAA
gi|95910 : TGAAGTCTATTGAG--CTT----TAA-AAT-GCTA--TTAA-AC-T-A-AC-AAA--TGTGAATCTGTC-TT-A-T-TTTTT-CG-ATTTCAAA-T-A---AT----A--AG-TG-TGGACAAA
gi|95911 : TGAACTCTATTGAA--CTT----TAATAAT-GCCA--TTAA-AC---A-AC-AAA--TGTGAGTCTGTC-TTAA-T-TTTTT-CG-ATTTCAAATT-A---AT----A--AG-TG-TGAACAAA
gi|95909 : TGAACTCTATTGAA--TTT----TAATA-T-GCCG--TTAA-AC-T-A-AC-AAA--TGTGAATCTGTC-TT-A-T-TATTT-CG-ATTTC-AA-T-A---AT----A--AG-TG-TGGACAAA
gi|95912 : TGAACTCTATTG-A--CTT----TAATAAT-GCCA--TTAA-AC-TAA-AC-AAA--TGTGAATCTGTC-TT-ATT-TTTTT-CG-ATTTTAAA-A-A---AT----ACGAG-TG-TGGACAAA
gi|95913 : TGAACTCTATTGAA--ATTAATTTAATAAT-GCCA--TTAA-AC-TTA-AC-AAA--TGTGAATCTGTC-TTAA-T-TTTTT-CT-ATTTCAAA-T-A---AT----AT-AG-TG-TGGACAAA
gi|95914 : TGAACTCTAT-GAA--CCT----TAATAAT-GCCAA-TTAA-AC-T-A-AC-AAA--T-TGAATCTGTC-TT-A-T-TTTTT-CG-A-TTCAAA-T-G---AT----A--AGTTG-TGGACAAA
gi|95915 : TGAACTCTATTGAA--CTT----TAATAAT-GCCA--TTA
gi|95916 : GAACTCT-TTGAATTCTT----TAATAAT-GCCA--TTAC-AC-T---AC-AAA--TGTGAATCTGTC-TT-A----TTTT-CG-AATTC-AA-T-G---AT-------AG-TG-TGGACAAA
gi|95917 : GACCTCTATTGAA--CTT----TAATAATGGCCA--TTAA-ACGT-AGAC-AAAATTGTGAATCTGTC-TT-A-TCTTTTT-CGTATTTTAAA-TAA---AT----G--AG-TG-TGAACAGA
gi|95918 : AAATCTATTGAAA-CCT----TCATAAT-GCCAATTTAC-AC-T-A-ACCAAA--TATGAATCT-TCATT-A-T-TTTTTTCG-ATTT-AAA-T-G---AT----A--AG-TG-TGGACAAA
gi|95919 : AACTCTATTGAA--CCT----TAATAAT-GCCA--TTAC-AC-T-A-AC--AA--TGTGAA--CGT--TT-A---TTTTT-CG---TTCAAAGT-ACATGT----A--AG-TG-T-GACAAA
gi|95920 : ACTCTATTGAG--CCT----TAATAAT-GCCA--T-AC-AC-T-A-AC-AAA--TGTGAATTTGTC-TT-A-T-TTTTT-TT-ATTTCAAA-T-G---AT----A--AGTTA-TGGACAAA
gi|95921 : TATTGAA--CTT----TAATAAT-GCCA--TTAGGAC-T-A-AC-AAA--TGTGAATCTGTC-TT-A---TTTTT-CG-ATTTCAAA-T-A---ATATTAA--AG-TGTTGGACAAA
gi|95922 : TT----TAATATT-GCCG--TTAA-AC-T-A-AC-AAA--TGTGAATCTGTC-TT-A-T-TATTT-CG-ATTTCAAA-T-A---AT----A--AG-TG-TGGACAAA
Alignments
lowQualScore : 66 5555 2 2 33 2 2 5 2 2 33 2 5 666 2 2 5 2 444 7777777 5 2
lowQualScore : .. .... . . .. . . . . . .. . . ... . . . . ... ....... . .
lowQualScore : 33 3333 5 5 44 7 7 3 7 7 77 7 3 111 7 7 3 7 777 3333333 3 7
consensus : TGAACTCTATTGAA--CTT----TAATAAT-GCC-A--TTAA-AC-T-A-AC-AAA--TGTGAATCTGTC-TT-A-T-TTTTT-CG-ATTTCAAA-T-A---AT----A--AG-TG-TGGACAAA
Reference ( family-941 ) : TGAACTCTATTGAA--CTT----TAATAAT-GCC-A--TTAA-AC-T-A-AC-AAA--TGTGAATCTGTC-TT-A-T-TTTTT-CG-ATTTCAAA-T-A---AT----A--AG-TG-TGGACAAA
gi|95907 : TGAACTCTATTGAA--CTT----TAATAAT-GTC-A--TTAA-AC-T-A-AC-AAA--TGTGAATCTGTC-TT-A-T-TTTTT-CG-ATTTCAAA-T-A---AT----A--AG-TG-TGGACAAA
gi|95908 : TGAACTCTATTGAA--TTT----TAATATT-GCC-G--TTAA-AC-T-A-AC-AAA--TGTGAATCTGTC-TT-A-T-TTTTT-CG-ATTTCAAA-T-A---AT----A--AG-TG-TGGACAAA
gi|95909 : TGAACTCTATTGAA--TTT----TAATA-T-GCC-G--TTAA-AC-T-A-AC-AAA--TGTGAATCTGTC-TT-A-T-TATTT-CG-ATTTC-AA-T-A---AT----A--AG-TG-TGGACAAA
gi|95910 : TGAAGTCTATTGAG--CTT----TAA-AAT-GCT-A--TTAA-AC-T-A-AC-AAA--TGTGAATCTGTC-TT-A-T-TTTTT-CG-ATTTCAAA-T-A---AT----A--AG-TG-TGGACAAA
gi|95911 : TGAACTCTATTGAA--CTT----TAATAAT-GCC-A--TTAA-AC---A-AC-AAA--TGTGAGTCTGTC-TTAA-T-TTTTT-CG-ATTTCAAATT-A---AT----A--AG-TG-TGAACAAA
gi|95912 : TGAACTCTATTG-A--CTT----TAATAAT-GCC-A--TTAA-AC-TAA-AC-AAA--TGTGAATCTGTC-TT-ATT-TTTTT-CG-ATTTTAAA-A-A---AT----ACGAG-TG-TGGACAAA
gi|95913 : TGAACTCTATTGAA--ATTAATTTAATAAT-GCC-A--TTAA-AC-TTA-AC-AAA--TGTGAATCTGTC-TTAA-T-TTTTT-CT-ATTTCAAA-T-A---AT----AT-AG-TG-TGGACAAA
gi|95914 : TGAACTCTAT-GAA--CCT----TAATAAT-GCCAA--TTAA-AC-T-A-AC-AAA--T-TGAATCTGTC-TT-A-T-TTTTT-CG-A-TTCAAA-T-G---AT----A--AGTTG-TGGACAAA
gi|95915 : TGAACTCTATTGAA--CTT----TAATAAT-GCC-A--TTA
gi|95916 : GAACTCT-TTGAATTCTT----TAATAAT-GCC-A--TTAC-AC-T---AC-AAA--TGTGAATCTGTC-TT-A----TTTT-CG-AATTC-AA-T-G---AT-------AG-TG-TGGACAAA
gi|95917 : GACCTCTATTGAA--CTT----TAATAATGGCC-A--TTAA-ACGT-AGAC-AAAATTGTGAATCTGTC-TT-A-TCTTTTT-CGTATTTTAAA-TAA---AT----G--AG-TG-TGAACAGA
gi|95918 : AAATCTATTGAAA-CCT----TCATAAT-GCC-AATTTAC-AC-T-A-ACCAAA--TATGAATCT-TCATT-A-T-TTTTTTCG-ATTT-AAA-T-G---AT----A--AG-TG-TGGACAAA
gi|95919 : AACTCTATTGAA--CCT----TAATAAT-GCC-A--TTAC-AC-T-A-AC--AA--TGTGAA--CGT--TT-A---TTTTT-CG---TTCAAAGT-ACATGT----A--AG-TG-T-GACAAA
gi|95920 : ACTCTATTGAG--CCT----TAATAAT-GCC-A--T-AC-AC-T-A-AC-AAA--TGTGAATTTGTC-TT-A-T-TTTTT-TT-ATTTCAAA-T-G---AT----A--AGTTA-TGGACAAA
gi|95921 : TATTGAA--CTT----TAATAAT-GCC-A--TTAGGAC-T-A-AC-AAA--TGTGAATCTGTC-TT-A---TTTTT-CG-ATTTCAAA-T-A---ATATTAA--AG-TGTTGGACAAA
gi|95922 : TT----TAATATT-GCC-G--TTAA-AC-T-A-AC-AAA--TGTGAATCTGTC-TT-A-T-TATTT-CG-ATTTCAAA-T-A---AT----A--AG-TG-TGGACAAA
Alignments
lowQualScore : 66 5555 2 2 33 2 2 5 2 2 33 2 5 666 2 2 5 2 444 7777777 5 2
lowQualScore : .. .... . . .. . . . . . .. . . ... . . . . ... ....... . .
lowQualScore : 33 3333 5 5 44 7 7 3 7 7 77 7 3 111 7 7 3 7 777 3333333 3 7
consensus : TGAACTCTATTGAA--CTT----TAATAAT-GCC-A--TTAA-AC-T-A-AC-AAA--TGTGAATCTGTC-TT-A-T-TTTTT-CG-ATTTCAAA-T-A---AT----A--AG-TG-TGGACAAA
Reference ( family-941 ) : TGAACTCTATTGAA--CTT----TAATAAT-GCC-A--TTAA-AC-T-A-AC-AAA--TGTGAATCTGTC-TT-A-T-TTTTT-CG-ATTTCAAA-T-A---AT----A--AG-TG-TGGACAAA
gi|95907 : TGAACTCTATTGAA--CTT----TAATAAT-GTC-A--TTAA-AC-T-A-AC-AAA--TGTGAATCTGTC-TT-A-T-TTTTT-CG-ATTTCAAA-T-A---AT----A--AG-TG-TGGACAAA
gi|95908 : TGAACTCTATTGAA--TTT----TAATATT-GCC-G--TTAA-AC-T-A-AC-AAA--TGTGAATCTGTC-TT-A-T-TTTTT-CG-ATTTCAAA-T-A---AT----A--AG-TG-TGGACAAA
gi|95909 : TGAACTCTATTGAA--TTT----TAATA-T-GCC-G--TTAA-AC-T-A-AC-AAA--TGTGAATCTGTC-TT-A-T-TATTT-CG-ATTTC-AA-T-A---AT----A--AG-TG-TGGACAAA
gi|95910 : TGAAGTCTATTGAG--CTT----TAA-AAT-GCT-A--TTAA-AC-T-A-AC-AAA--TGTGAATCTGTC-TT-A-T-TTTTT-CG-ATTTCAAA-T-A---AT----A--AG-TG-TGGACAAA
gi|95911 : TGAACTCTATTGAA--CTT----TAATAAT-GCC-A--TTAA-AC---A-AC-AAA--TGTGAGTCTGTC-TTAA-T-TTTTT-CG-ATTTCAAATT-A---AT----A--AG-TG-TGAACAAA
gi|95912 : TGAACTCTATTG-A--CTT----TAATAAT-GCC-A--TTAA-AC-TAA-AC-AAA--TGTGAATCTGTC-TT-ATT-TTTTT-CG-ATTTTAAA-A-A---AT----ACGAG-TG-TGGACAAA
gi|95913 : TGAACTCTATTGAA--ATTAATTTAATAAT-GCC-A--TTAA-AC-TTA-AC-AAA--TGTGAATCTGTC-TTAA-T-TTTTT-CT-ATTTCAAA-T-A---AT----AT-AG-TG-TGGACAAA
gi|95914 : TGAACTCTAT-GAA--CCT----TAATAAT-GCCAA--TTAA-AC-T-A-AC-AAA--T-TGAATCTGTC-TT-A-T-TTTTT-CG-A-TTCAAA-T-G---AT----A--AGTTG-TGGACAAA
gi|95915 : TGAACTCTATTGAA--CTT----TAATAAT-GCC-A--TTA
gi|95916 : GAACTCT-TTGAATTCTT----TAATAAT-GCC-A--TTAC-AC-T---AC-AAA--TGTGAATCTGTC-TT-A----TTTT-CG-AATTC-AA-T-G---AT-------AG-TG-TGGACAAA
gi|95917 : GACCTCTATTGAA--CTT----TAATAATGGCC-A--TTAA-ACGT-AGAC-AAAATTGTGAATCTGTC-TT-A-TCTTTTT-CGTATTTTAAA-TAA---AT----G--AG-TG-TGAACAGA
gi|95918 : AAATCTATTGAAA-CCT----TCATAAT-GCC-AATTTAC-AC-T-A-ACCAAA--TATGAATCT-TCATT-A-T-TTTTTTCG-ATTT-AAA-T-G---AT----A--AG-TG-TGGACAAA
gi|95919 : AACTCTATTGAA--CCT----TAATAAT-GCC-A--TTAC-AC-T-A-AC--AA--TGTGAA--CGT--TT-A---TTTTT-CG---TTCAAAGT-ACATGT----A--AG-TG-T-GACAAA
gi|95920 : ACTCTATTGAG--CCT----TAATAAT-GCC-A--T-AC-AC-T-A-AC-AAA--TGTGAATTTGTC-TT-A-T-TTTTT-TT-ATTTCAAA-T-G---AT----A--AGTTA-TGGACAAA
gi|95921 : TATTGAA--CTT----TAATAAT-GCC-A--TTAGGAC-T-A-AC-AAA--TGTGAATCTGTC-TT-A---TTTTT-CG-ATTTCAAA-T-A---ATATTAA--AG-TGTTGGACAAA
gi|95922 : TT----TAATATT-GCC-G--TTAA-AC-T-A-AC-AAA--TGTGAATCTGTC-TT-A-T-TATTT-CG-ATTTCAAA-T-A---AT----A--AG-TG-TGGACAAA
blockSeqs : TT AATT G A AT G G A G C AT A A TT T T T A CAT ATTAA T T
blockSeqs : A . . . . . . T . . . . A TC . . G . . ACG T .
blockSeqs : . . . . . . . . . . . . . T . . . . . AT . .
blockSeqs : . . . . . . . . . . . . . T . . . . . A . .
blockSeqs : . . . . . . . . . . . . . T . . . . . A . .
blockSeqs : . . . . . . . . . . . . . T . . . . . A . .
blockSeqs : . . . . . . . . . . . . . T . . . . . A . .
blockSeqs : . . . . . . . . . . . . . T . . . . . A . .
blockSeqs : . . . . . . . . . . . . . T . . . . . G . .
blockSeqs : . . . . . . . . . . . . . T . . . . . A . .
blockSeqs : . . . . . . . . . . . . . T . . . . . A . .
blockSeqs : . . . . . . . . . . . . . . . . . . . A . .
blockSeqs : . . . . . . . . . . . . . . . . . . . A . .
blockSeqs : . . . . . . . . . . . . . . . . . . . . . .
blockSeqs : . . . .
blockSeqCons :
originalCons : TGAACTCTATTGAA--CTT----TAATAAT-GCC-A--TTAA-AC-T-A-AC-AAA--TGTGAATCTGTC-TT-A-T-TTTTT-CG-ATTTCAAA-T-A---AT----A--AG-TG-TGGACAAA
finalCons : TGAACTCTATTGAA--CTT----TAATAAT-GCC-A--TTAA-AC-T-A-AC-AAA--TGTGAATCTGTC-TT-A-T-TTTTT-CG-ATTTCAAA-T-A---AT----A--AG-TG-TGGACAAA
Alignments
lowQualScore : 66 5555 2 2 33 2 2 5 2 2 33 2 5 666 2 2 5 2 444 7777777 5 2
lowQualScore : .. .... . . .. . . . . . .. . . ... . . . . ... ....... . .
lowQualScore : 33 3333 5 5 44 7 7 3 7 7 77 7 3 111 7 7 3 7 777 3333333 3 7
consensus : TGAACTCTATTGAA--CTT----TAATAAT-GCC-A--TTAA-AC-T-A-AC-AAA--TGTGAATCTGTC-TT-A-T-TTTTT-CG-ATTTCAAA-T-A---AT----A--AG-TG-TGGACAAA
Reference ( family-941 ) : TGAACTCTATTGAA--CTT----TAATAAT-GCC-A--TTAA-AC-T-A-AC-AAA--TGTGAATCTGTC-TT-A-T-TTTTT-CG-ATTTCAAA-T-A---AT----A--AG-TG-TGGACAAA
gi|95907 : TGAACTCTATTGAA--CTT----TAATAAT-GTC-A--TTAA-AC-T-A-AC-AAA--TGTGAATCTGTC-TT-A-T-TTTTT-CG-ATTTCAAA-T-A---AT----A--AG-TG-TGGACAAA
gi|95908 : TGAACTCTATTGAA--TTT----TAATATT-GCC-G--TTAA-AC-T-A-AC-AAA--TGTGAATCTGTC-TT-A-T-TTTTT-CG-ATTTCAAA-T-A---AT----A--AG-TG-TGGACAAA
gi|95909 : TGAACTCTATTGAA--TTT----TAATA-T-GCC-G--TTAA-AC-T-A-AC-AAA--TGTGAATCTGTC-TT-A-T-TATTT-CG-ATTTC-AA-T-A---AT----A--AG-TG-TGGACAAA
gi|95910 : TGAAGTCTATTGAG--CTT----TAA-AAT-GCT-A--TTAA-AC-T-A-AC-AAA--TGTGAATCTGTC-TT-A-T-TTTTT-CG-ATTTCAAA-T-A---AT----A--AG-TG-TGGACAAA
gi|95911 : TGAACTCTATTGAA--CTT----TAATAAT-GCC-A--TTAA-AC---A-AC-AAA--TGTGAGTCTGTC-TTAA-T-TTTTT-CG-ATTTCAAATT-A---AT----A--AG-TG-TGAACAAA
gi|95912 : TGAACTCTATTG-A--CTT----TAATAAT-GCC-A--TTAA-AC-TAA-AC-AAA--TGTGAATCTGTC-TT-ATT-TTTTT-CG-ATTTTAAA-A-A---AT----ACGAG-TG-TGGACAAA
gi|95913 : TGAACTCTATTGAA--ATTAATTTAATAAT-GCC-A--TTAA-AC-TTA-AC-AAA--TGTGAATCTGTC-TTAA-T-TTTTT-CT-ATTTCAAA-T-A---AT----AT-AG-TG-TGGACAAA
gi|95914 : TGAACTCTAT-GAA--CCT----TAATAAT-GCCAA--TTAA-AC-T-A-AC-AAA--T-TGAATCTGTC-TT-A-T-TTTTT-CG-A-TTCAAA-T-G---AT----A--AGTTG-TGGACAAA
gi|95915 : TGAACTCTATTGAA--CTT----TAATAAT-GCC-A--TTA
gi|95916 : GAACTCT-TTGAATTCTT----TAATAAT-GCC-A--TTAC-AC-T---AC-AAA--TGTGAATCTGTC-TT-A----TTTT-CG-AATTC-AA-T-G---AT-------AG-TG-TGGACAAA
gi|95917 : GACCTCTATTGAA--CTT----TAATAATGGCC-A--TTAA-ACGT-AGAC-AAAATTGTGAATCTGTC-TT-A-TCTTTTT-CGTATTTTAAA-TAA---AT----G--AG-TG-TGAACAGA
gi|95918 : AAATCTATTGAAA-CCT----TCATAAT-GCC-AATTTAC-AC-T-A-ACCAAA--TATGAATCT-TCATT-A-T-TTTTTTCG-ATTT-AAA-T-G---AT----A--AG-TG-TGGACAAA
gi|95919 : AACTCTATTGAA--CCT----TAATAAT-GCC-A--TTAC-AC-T-A-AC--AA--TGTGAA--CGT--TT-A---TTTTT-CG---TTCAAAGT-ACATGT----A--AG-TG-T-GACAAA
gi|95920 : ACTCTATTGAG--CCT----TAATAAT-GCC-A--T-AC-AC-T-A-AC-AAA--TGTGAATTTGTC-TT-A-T-TTTTT-TT-ATTTCAAA-T-G---AT----A--AGTTA-TGGACAAA
gi|95921 : TATTGAA--CTT----TAATAAT-GCC-A--TTAGGAC-T-A-AC-AAA--TGTGAATCTGTC-TT-A---TTTTT-CG-ATTTCAAA-T-A---ATATTAA--AG-TGTTGGACAAA
gi|95922 : TT----TAATATT-GCC-G--TTAA-AC-T-A-AC-AAA--TGTGAATCTGTC-TT-A-T-TATTT-CG-ATTTCAAA-T-A---AT----A--AG-TG-TGGACAAA