lowQualScore : 1111111 1 33
lowQualScore : 0 33 66 2 222 2 2 88 33 2 6666666 2 66 2 5 22 333 1 1 1 77 444
lowQualScore : . .. .. . ... . . .. .. . ....... . .. . . .. ... . . . .. ...
lowQualScore : 6 77 33 5 999 5 5 44 44 5 6666666 5 99 5 0 55 222 8 4 3 11 777
consensus : AAAGTAATTTTCGCC--A--CT-TGA-GA-TTTT-TTT--C--GC-CA------CTTTTGA-A--TTT-T-TT--C---GCC-ATTGGCGCAAATGGCGACTC--A---CAGCTCGAGCCCTG
Reference ( gi|113271 ) : AAAGTAATTTTCGCC--A--CT-TGA-GA-TTTT-TTT--C--GC-CA------ATTTTGA-A--TTT-T-TT--C---GCC-ATTGGCGCAAATGGCGACTCAAA---CAGCTCGAGCCCTG
gi|113270 : AAAGTAATTTTCGCC--A--CT-TGA-GA-TTTT-TTT--C--GC-CA------ATTTTGA-A--TTT-T-TT--C---GCC-ATTGGCGCAAATGGCGACTCAAA---CAGCTCGAGCCCTG
gi|113269 : AAAGTTATTTTCGCC--A--CT-TGA-GA-TTTT-TTTT-C--GC-CA------ATTTTGA-A--TTT-TTTT--C---GCC-ATTGGCGCAAATGGCGACTC--A---CAGCTCGAGTCCTG
gi|113273 : AAAGTTATTTTCGCC--A--CT-TGA-G----TT-TTT--C--GC-CA------ATTTTGA-ATTTTT-T-TT--C---G-C-ATAGGCGCAAATGGCGACTC--A---CAGCTCAAGCCCTG
gi|113272 : AAAGAAAATTTCGCC--A--CT-TCC-GG-TTTT-TTT--C--GC-CA------CTTTCAA-A--TTT-TTTT--C---GCC-ATTGGCGCAAATGGCGACTC--A---CAGCTTGAGCCC
gi|113274 : AAAAAAAATTTCGCC--A--CT-TCC-GA-TTTT-TTT--CTCGC-CA------CTTTC-A-A--TTT-T-TTTCC---GCC-ATTTGCGCAAATGGCGACTC--A---CAGCTCGAGCCCTG
gi|113275 : AAATTGGCTTTCGCC--AATTT-TAT-GA-TTTTCTTT--A--GC-CA------TTTTTGA-G--CTTCT-TT--C---GCC-AATGGCG--AACGG------------CAGCGCTAGCCCTG
gi|113276 : AGTTTTTGCCCAA--TT-TGA-GA-TTTT-TTT--C--G--CA------ACTTTGA-AATTTT-T-TT--C---A-C-ATTGGCGTAAATGGCGATCC--A---CAG-TAGAGCC
gi|113277 : ATTTTCGCG--A--CT-TAA-GA-TTTT-TTT--G--GC-CA------TTTTTGA-A--TTT-T-TT--C---GTC-ATTGGCGCAAATGGCCACTC--A---CAGCTCGAGTCCTG
gi|113278 : TTTTCGCC--A--CT-TGA-GA-TTTT-TTTTTC--GC-CA------CTTTTGA-A--TTT-TTTT--C---GCC-ATTGGCGCAAATGGCGACTC--A---CAGCTCGAGCCCTG
gi|113279 : TTTTCGCT--A--CT-TAA-GA-TTAT-TTT--C--GC-CA------CTTTAGA-A--TTT-TTTT--C---GCC-ATTGGCGCAAATGGCGACTC--A---CAGCTCAAGCCCTG
gi|113280 : TTTTTGCC--A--CT-TAA-GA-TTTT-TTTT-C--GCTCA------CTTTTGA-T--TTT-T-TT--TTCAGCC-ATTGGCGCAAATGGCGACTCACA----AGCTCGAGCCCTG
gi|113281 : TTTTCACC--A--CT-TAAAGA-TTTT-TTT--T--GC-CA-------CTTTGA-A--TTT-T-TT--T---GCCAATTGGCGCAATTGA-GACTCCAC---AAGCTCGA-CCCTG
gi|113282 : TTTTCGCC--A--CT-TAA-GA-TTTT-TTT--C--GC-CA------CTTTTGA-A--TTT-GATT--C---GCC-ATTGGC
gi|113283 : TTTTCGCC--AA-TT-TGT-GAATTTT-TGT--C--GC-CA------TTTTTTATA--TTC-T-TT--C---GCC-AATGGCGAAAATGG-----CAAACGGCAGCGTGAGCCCTG
gi|113284 : CGCC--A--CTATG--GA-TTTT-TTT--C--GC-CACTTAAGATTTTA------TT-T-TT--C---ACC-AT---------TGGCGAGTC--A---CAGCTCGAACACTG
gi|113285 : T-TAA-GA-TTTG-TTT--T--GC-CA------CTTCTGA-T--TTT-TTTT--C---GCC-ATT-GCGC-AAT-GCGACTC--A---CTGCTCGAGTCATG
gi|113270 : T--C---GCC-ATTTGCGCCAATGGCGA
gi|113269 : aaagtaattttcgccacttgagatttttttcgccaattttgaatttttT--C---GCC-ATTTGCGCCAATGGCGActcaaacagctcgagccctg
gi|113278 : aaagttattttcgccacttgagattttttttcgccaattttgaattttttT--C---GCC-ATTTGCGCCAATGGCGActcacagctcgagtcctg
gi|113279 : ttttcgccacttgagatttttttttcgccacttttgaattttttT--C---GCC-ATTTGCGCCAATGGCGActcacagctcgagccctg
gi|113272 : ttttcgctacttaagattattttcgccactttagaattttttT--C---GCC-ATTTGCGCCAATGGCGActcacagctcaagccctg
gi|113274 : aaagaaaatttcgccacttccggtttttttcgccactttcaaattttttT--C---GCC-ATTTGCGCAAATGGCGctcacagcttgagccc
Alignments
lowQualScore : 1
lowQualScore : 33 55 2 2 2 2 77 33 2 4 444 2 1 66 444 2 2 66 5
lowQualScore : .. .. . . . . .. .. . . ... . . .. ... . . .. .
lowQualScore : 44 99 4 4 4 4 99 22 4 7 111 4 8 55 111 4 5 99 0
consensus : AAAGTAATTTTCGCC--A--CT-TGA-GA-TTTT-TTT--C--GC-CACTTTTGA-AT---TT-T-TT--C---GCC-ATTGGCGCAAATGGCGACT-C--AC-AGCTCGAGCCCTG
Reference ( family-938 ) : AAAGTAATTTTCGCC--A--CT-TGA-GA-TTTT-TTT--C--GC-CACTTTTGA-AT---TT-T-TT--C---GCC-ATTGGCGCAAATGGCGACT-C--AC-AGCTCGAGCCCTG
gi|113269 : AAAGTTATTTTCGCC--A--CT-TGA-GA-TTTT-TTTT-C--GC-CAATTTTGA-AT---TT-TTTT--C---GCC-ATTGGCGCAAATGGCGACT-C--AC-AGCTCGAGTCCTG
gi|113270 : AAAGTAATTTTCGCC--A--CT-TGA-GA-TTTT-TTT--C--GC-CAATTTTGA-AT---TT-T-TT--C---GCC-ATTGGCGCAAATGGCGACT-CAAAC-AGCTCGAGCCCTG
gi|113271 : AAAGTAATTTTCGCC--A--CT-TGA-GA-TTTT-TTT--C--GC-CAATTTTGA-AT---TT-T-TT--C---GCC-ATTGGCGCAAATGGCGACT-CAAAC-AGCTCGAGCCCTG
gi|113272 : AAAGAAAATTTCGCC--A--CT-TCC-GG-TTTT-TTT--C--GC-CACTTTCAA-AT---TT-TTTT--C---GCC-ATTGGCGCAAATGGCGACT-C--AC-AGCTTGAGCCC
gi|113273 : AAAGTTATTTTCGCC--A--CT-TGA-G----TT-TTT--C--GC-CAATTTTGA-AT---TT-T-TTTTC---GC--ATAGGCGCAAATGGCGACT-C--AC-AGCTCAAGCCCTG
gi|113274 : AAAAAAAATTTCGCC--A--CT-TCC-GA-TTTT-TTT--CTCGC-CACTTTC-A-AT---TT-T-TTTCC---GCC-ATTTGCGCAAATGGCGACT-C--AC-AGCTCGAGCCCTG
gi|113275 : AAATTGGCTTTCGCC--AATTT-TAT-GA-TTTTCTTT--A--GC-CATTTTTGA-GC---TTCT-TT--C---GCC-A---------ATGGCGAAC-G--GC-AGCGCTAGCCCTG
gi|113276 : AGTTTTTGCCCAA--TT-TGA-GA-TTTT-TTT--C--GC-AACTTTGAA-AT---TT-T-TT--T---CAC-ATTGGCGTAAATGGCGATC-C--AC-AG-TAGAGCC
gi|113277 : ATTTTCGCG--A--CT-TAA-GA-TTTT-TTT--G--GC-CATTTTTGA-AT---TT-T-TT--C---GTC-ATTGGCGCAAATGGCCACT-C--AC-AGCTCGAGTCCTG
gi|113278 : TTTTCGCC--A--CT-TGA-GA-TTTT-TTTTTC--GC-CACTTTTGA-AT---TT-TTTT--C---GCC-ATTGGCGCAAATGGCGACT-C--AC-AGCTCGAGCCCTG
gi|113279 : TTTTCGCT--A--CT-TAA-GA-TTAT-TTT--C--GC-CACTTTAGA-AT---TT-TTTT--C---GCC-ATTGGCGCAAATGGCGACT-C--AC-AGCTCAAGCCCTG
gi|113280 : TTTTTGCC--A--CT-TAA-GA-TTTT-TTTT-C--GCTCACTTTTGA-TT---TT-T-TT--TTCAGCC-ATTGGCGCAAATGGCGACT-C--ACAAGCTCGAGCCCTG
gi|113281 : TTTTCACC--A--CT-TAAAGA-TTTT-TTT--T--GC-CAC-TTTGA-AT---TT-T-TT--T---GCCAATTGGCGCAATTGA-GACTCC--ACAAGCTCGA-CCCTG
gi|113282 : TTTTCGCC--A--CT-TAA-GA-TTTT-TTT--C--GC-CACTTTTGA-AT---TT-GATT--C---GCC-ATTGGC
gi|113283 : TTTTCGCC--AA-TT-TGT-GAATTTT-TGT--C--GC-CATTTTTTATAT---TC-T-TT--C---GCC-AATGGCGAAAATGGCAAAC-G--GC-AGCGTGAGCCCTG
gi|113284 : CGCC--A--CTATG--GA-TTTT-TTT--C--GC-CACTTAAGA-TTTTATT-T-TT--C---ACC-AT---------TGGCGAGT-C--AC-AGCTCGAACACTG
gi|113285 : T-TAA-GA-TTTG-TTT--T--GC-CACTTCTGATTT---TT-T-TT--C---GCC-ATT-GCGC-AAT-GCGACT-C--AC-TGCTCGAGTCATG
Alignments
lowQualScore : 1
lowQualScore : 33 55 2 2 2 2 77 33 2 4 444 2 1 66 444 2 2 66 5
lowQualScore : .. .. . . . . .. .. . . ... . . .. ... . . .. .
lowQualScore : 44 99 4 4 4 4 99 22 4 7 111 4 8 55 111 4 5 99 0
consensus : AAAGTAATTTTCGCC--A--CT-TGA-GA-TTTT-TTT--C--GC-CACTTTTGA-AT---TT-T-TT--C---GCC-ATTGGCGCAAATGGCGACT-C--AC-AGCTCGAGCCCTG
Reference ( family-938 ) : AAAGTAATTTTCGCC--A--CT-TGA-GA-TTTT-TTT--C--GC-CACTTTTGA-AT---TT-T-TT--C---GCC-ATTGGCGCAAATGGCGACT-C--AC-AGCTCGAGCCCTG
gi|113269 : AAAGTTATTTTCGCC--A--CT-TGA-GA-TTTT-TTTT-C--GC-CAATTTTGA-AT---TT-TTTT--C---GCC-ATTGGCGCAAATGGCGACT-C--AC-AGCTCGAGTCCTG
gi|113270 : AAAGTAATTTTCGCC--A--CT-TGA-GA-TTTT-TTT--C--GC-CAATTTTGA-AT---TT-T-TT--C---GCC-ATTGGCGCAAATGGCGACT-CAAAC-AGCTCGAGCCCTG
gi|113271 : AAAGTAATTTTCGCC--A--CT-TGA-GA-TTTT-TTT--C--GC-CAATTTTGA-AT---TT-T-TT--C---GCC-ATTGGCGCAAATGGCGACT-CAAAC-AGCTCGAGCCCTG
gi|113272 : AAAGAAAATTTCGCC--A--CT-TCC-GG-TTTT-TTT--C--GC-CACTTTCAA-AT---TT-TTTT--C---GCC-ATTGGCGCAAATGGCGACT-C--AC-AGCTTGAGCCC
gi|113273 : AAAGTTATTTTCGCC--A--CT-TGA-G----TT-TTT--C--GC-CAATTTTGA-AT---TT-T-TTTTC---GC--ATAGGCGCAAATGGCGACT-C--AC-AGCTCAAGCCCTG
gi|113274 : AAAAAAAATTTCGCC--A--CT-TCC-GA-TTTT-TTT--CTCGC-CACTTTC-A-AT---TT-T-TTTCC---GCC-ATTTGCGCAAATGGCGACT-C--AC-AGCTCGAGCCCTG
gi|113275 : AAATTGGCTTTCGCC--AATTT-TAT-GA-TTTTCTTT--A--GC-CATTTTTGA-GC---TTCT-TT--C---GCC-A---------ATGGCGAAC-G--GC-AGCGCTAGCCCTG
gi|113276 : AGTTTTTGCCCAA--TT-TGA-GA-TTTT-TTT--C--GC-AACTTTGAA-AT---TT-T-TT--T---CAC-ATTGGCGTAAATGGCGATC-C--AC-AG-TAGAGCC
gi|113277 : ATTTTCGCG--A--CT-TAA-GA-TTTT-TTT--G--GC-CATTTTTGA-AT---TT-T-TT--C---GTC-ATTGGCGCAAATGGCCACT-C--AC-AGCTCGAGTCCTG
gi|113278 : TTTTCGCC--A--CT-TGA-GA-TTTT-TTTTTC--GC-CACTTTTGA-AT---TT-TTTT--C---GCC-ATTGGCGCAAATGGCGACT-C--AC-AGCTCGAGCCCTG
gi|113279 : TTTTCGCT--A--CT-TAA-GA-TTAT-TTT--C--GC-CACTTTAGA-AT---TT-TTTT--C---GCC-ATTGGCGCAAATGGCGACT-C--AC-AGCTCAAGCCCTG
gi|113280 : TTTTTGCC--A--CT-TAA-GA-TTTT-TTTT-C--GCTCACTTTTGA-TT---TT-T-TT--TTCAGCC-ATTGGCGCAAATGGCGACT-C--ACAAGCTCGAGCCCTG
gi|113281 : TTTTCACC--A--CT-TAAAGA-TTTT-TTT--T--GC-CAC-TTTGA-AT---TT-T-TT--T---GCCAATTGGCGCAATTGA-GACTCC--ACAAGCTCGA-CCCTG
gi|113282 : TTTTCGCC--A--CT-TAA-GA-TTTT-TTT--C--GC-CACTTTTGA-AT---TT-GATT--C---GCC-ATTGGC
gi|113283 : TTTTCGCC--AA-TT-TGT-GAATTTT-TGT--C--GC-CATTTTTTATAT---TC-T-TT--C---GCC-AATGGCGAAAATGGCAAAC-G--GC-AGCGTGAGCCCTG
gi|113284 : CGCC--A--CTATG--GA-TTTT-TTT--C--GC-CACTTAAGA-TTTTATT-T-TT--C---ACC-AT---------TGGCGAGT-C--AC-AGCTCGAACACTG
gi|113285 : T-TAA-GA-TTTG-TTT--T--GC-CACTTCTGATTT---TT-T-TT--C---GCC-ATT-GCGC-AAT-GCGACT-C--AC-TGCTCGAGTCATG
blockSeqs : CA AT A A A C TT TC T T TTA C T TT TCA A C AA A
blockSeqs : . A . . . . T . . T . . T TC . . . AA A
blockSeqs : . . . . . . . . . . . . T . . . . . .
blockSeqs : . . . . . . . . . . . . A . . . . . .
blockSeqs : . . . . . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . . . .
blockSeqCons : **
originalCons : AAAGTAATTTTCGCC--A--CT-TGA-GA-TTTT-TTT--C--GC-CACTTTTGA-AT---TT-T-TT--C---GCC-ATTGGCGCAAATGGCGACT-C--AC-AGCTCGAGCCCTG
finalCons : AAAGTAATTTTCGCC--A--CT-TGA-GA-TTTT-TTT--C--GC-CACTTTTGA-AT---TT-T-TT--C---GCC-ATTGGCGCAAATGGCGACT-C--AC-AGCTCGAGCCCTG
Alignments
lowQualScore : 1
lowQualScore : 33 55 2 2 2 2 77 33 2 4 444 2 1 66 444 2 2 66 5
lowQualScore : .. .. . . . . .. .. . . ... . . .. ... . . .. .
lowQualScore : 44 99 4 4 4 4 99 22 4 7 111 4 8 55 111 4 5 99 0
consensus : AAAGTAATTTTCGCC--A--CT-TGA-GA-TTTT-TTT--C--GC-CACTTTTGA-AT---TT-T-TT--C---GCC-ATTGGCGCAAATGGCGACT-C--AC-AGCTCGAGCCCTG
Reference ( family-938 ) : AAAGTAATTTTCGCC--A--CT-TGA-GA-TTTT-TTT--C--GC-CACTTTTGA-AT---TT-T-TT--C---GCC-ATTGGCGCAAATGGCGACT-C--AC-AGCTCGAGCCCTG
gi|113269 : AAAGTTATTTTCGCC--A--CT-TGA-GA-TTTT-TTTT-C--GC-CAATTTTGA-AT---TT-TTTT--C---GCC-ATTGGCGCAAATGGCGACT-C--AC-AGCTCGAGTCCTG
gi|113270 : AAAGTAATTTTCGCC--A--CT-TGA-GA-TTTT-TTT--C--GC-CAATTTTGA-AT---TT-T-TT--C---GCC-ATTGGCGCAAATGGCGACT-CAAAC-AGCTCGAGCCCTG
gi|113271 : AAAGTAATTTTCGCC--A--CT-TGA-GA-TTTT-TTT--C--GC-CAATTTTGA-AT---TT-T-TT--C---GCC-ATTGGCGCAAATGGCGACT-CAAAC-AGCTCGAGCCCTG
gi|113272 : AAAGAAAATTTCGCC--A--CT-TCC-GG-TTTT-TTT--C--GC-CACTTTCAA-AT---TT-TTTT--C---GCC-ATTGGCGCAAATGGCGACT-C--AC-AGCTTGAGCCC
gi|113273 : AAAGTTATTTTCGCC--A--CT-TGA-G----TT-TTT--C--GC-CAATTTTGA-AT---TT-T-TTTTC---GC--ATAGGCGCAAATGGCGACT-C--AC-AGCTCAAGCCCTG
gi|113274 : AAAAAAAATTTCGCC--A--CT-TCC-GA-TTTT-TTT--CTCGC-CACTTTC-A-AT---TT-T-TTTCC---GCC-ATTTGCGCAAATGGCGACT-C--AC-AGCTCGAGCCCTG
gi|113275 : AAATTGGCTTTCGCC--AATTT-TAT-GA-TTTTCTTT--A--GC-CATTTTTGA-GC---TTCT-TT--C---GCC-A---------ATGGCGAAC-G--GC-AGCGCTAGCCCTG
gi|113276 : AGTTTTTGCCCAA--TT-TGA-GA-TTTT-TTT--C--GC-AACTTTGAA-AT---TT-T-TT--T---CAC-ATTGGCGTAAATGGCGATC-C--AC-AG-TAGAGCC
gi|113277 : ATTTTCGCG--A--CT-TAA-GA-TTTT-TTT--G--GC-CATTTTTGA-AT---TT-T-TT--C---GTC-ATTGGCGCAAATGGCCACT-C--AC-AGCTCGAGTCCTG
gi|113278 : TTTTCGCC--A--CT-TGA-GA-TTTT-TTTTTC--GC-CACTTTTGA-AT---TT-TTTT--C---GCC-ATTGGCGCAAATGGCGACT-C--AC-AGCTCGAGCCCTG
gi|113279 : TTTTCGCT--A--CT-TAA-GA-TTAT-TTT--C--GC-CACTTTAGA-AT---TT-TTTT--C---GCC-ATTGGCGCAAATGGCGACT-C--AC-AGCTCAAGCCCTG
gi|113280 : TTTTTGCC--A--CT-TAA-GA-TTTT-TTTT-C--GCTCACTTTTGA-TT---TT-T-TT--TTCAGCC-ATTGGCGCAAATGGCGACT-C--ACAAGCTCGAGCCCTG
gi|113281 : TTTTCACC--A--CT-TAAAGA-TTTT-TTT--T--GC-CAC-TTTGA-AT---TT-T-TT--T---GCCAATTGGCGCAATTGA-GACTCC--ACAAGCTCGA-CCCTG
gi|113282 : TTTTCGCC--A--CT-TAA-GA-TTTT-TTT--C--GC-CACTTTTGA-AT---TT-GATT--C---GCC-ATTGGC
gi|113283 : TTTTCGCC--AA-TT-TGT-GAATTTT-TGT--C--GC-CATTTTTTATAT---TC-T-TT--C---GCC-AATGGCGAAAATGGCAAAC-G--GC-AGCGTGAGCCCTG
gi|113284 : CGCC--A--CTATG--GA-TTTT-TTT--C--GC-CACTTAAGA-TTTTATT-T-TT--C---ACC-AT---------TGGCGAGT-C--AC-AGCTCGAACACTG
gi|113285 : T-TAA-GA-TTTG-TTT--T--GC-CACTTCTGATTT---TT-T-TT--C---GCC-ATT-GCGC-AAT-GCGACT-C--AC-TGCTCGAGTCATG