lowQualScore : 11 111 11111 222222222 1111 222222 111
lowQualScore : 5 2 8 2 22 222 22222 33 55 88 111111111 1 33 2 0 3333 4444 2 2 444 444444 4 888 2 111 444 33 33 66 2 2 3 5
lowQualScore : . . . . .. ... ..... .. .. .. ......... . .. . . .... .... . . ... ...... . ... . ... ... .. .. .. . . . .
lowQualScore : 0 4 2 8 77 999 22222 44 99 33 444444444 4 44 5 6 8888 8888 5 5 888 999999 6 888 5 222 777 77 99 22 0 6 1 7
consensus : TTGTA-TTGACAACCTTACTNTATGCAAGC---GAGAC-C---TGGACAG--TCT--AT-CAG----A---GGCACG--C-CAGGAAA----CTC---AA-CCACTTC-CACA-C--AGCNTGCCTTCGAAAAC-TTC-TCGGC-GTCA---GATGGCAGGAC-AAA--ATCCC-GGACACCG-AGATCCTT-AGCC
Reference ( gi|5103 ) : TTGTA-TTGACAACCTTACTGTATGCAAGC---GAGAC-T---TGGACAG--TCT--AT-CAA----A---GGCACA--C-CAAGAAA----CTC---AA-CCATTTC-CATA-C--AGTGTGTCTTCGAAAAA-TTC-TCGGA-GTCA---GATGGCAGGAT-AAA--ATTCC-GGATACCG-AAATCCTT-AGCC
gi|5104 : TTGTA-TTGACAACCTTACTGTATGCAAGC---GAGAC-T---TGGACAG--TCT--AT-CAA----A---GGCACA--C-CAAGACT----CTT---AA-CCATTTC-CATA-C--AGTATGTCTTCGGAAAA-TTC-TCGGT-GTCA---GATGGCAGGAT-AAA--ATTCC-GGATACCG-AAATCCTT-AGCC
gi|5106 : TTGTA-TTGACAACCTTACTGTATGCAAGC---GAGAC-T---TGGACAG--TCT--AT-CAT----A---GGCACA--C-CAAGAAA----CTC---AA-CCATTTC-CATA-C--AGTGTGTCTTCGGACAA-TTC-TCGGA-GTCA---GATGACAGGGC-AAA--ATTCC-AGATACCG-AAATCTTT-AGCC
gi|5107 : TTGTA-TTGACAACCTTACTGTATGGAAGC---GAGAC-T---TGGACAG--TCT--AT-CAA----A---GGCACA--C-CAAGAAAA---CTC---AA-CCATTTCTTAT--C--AGTGTGTCTTCAAAATA-TTC-TCGGA-GTCA---GATGGCAGGAT-AAA--ATTCC-GGATACCGAAAATCCTT-AGCC
gi|5105 : TTGTA-TTGACA-CCTTACTGTATGCAAGCC--GAGAC-TA--TGGACAG--TCT--AT-CAA----A---GGCACA--CTCAA---A----CTCTTAAA-CCATTTC-CATA-C--AGTATGTCTTCGGAAAA-TCT-CCGGT-GTCA---GATGGCAGGATAAAA--ATTCCGGGATACCG-AAATCCTT-AG
gi|5108 : TTGTT-CTCACAGCATTGCTCTACGGCTGT---GAAAC-C---TGGACAG--TCT--AC-CAG----T---GTCACG--C-CAGGAAA----CTG---AA-CCATTTC-CACA-C--CACCTG-CCTCAAAAAACTTC-TCGGC-ATCA---AGTGGCAAGAC-A
gi|5109 : TGTAATTACCATCCTT-CTATATACAAGA---GAAGCATGAATGGACAGGCTCT--AG-CAG----ATATGTCACA--T------AG----CTC---AA-CTACTTC-CAT--CTTAGC-TGTCCTCGAGA---CTCATTAGC-ATTA---AATGGCAGGAT-AAA--ATCCC-TGATACGG-AGATCCTT-AACC
gi|5110 : GTA-CTGACGCTCTC-CTCTACGATAGC---GAAAC-C---TGGACAG--TCT--A--CAGC---A---GACACG--C-TAAACAA----CTC---AA-CCACTTT-CACA-TG-AGT-TGCCTCCCGAGAC-TTT-CCG
gi|5111 : TA-CTGACCACTCTCCTCTACGCTAGC---GAAAC-C---TGGACAG--TCTGTAT-CTACAGCA---GACACG--C-CAGACAA----CTC---GA-CCATTTT-TACA-TG-AGT-TGCCTCCACAGAC-TTT-TATGC-ATCA---AGTGGAAGAAC-AAA--ATTCC-ATACACGG-AGATCCTTGAGCttg
gi|5113 : ACCACCCTTCTCTATG---GCTCAGAGAC-C---TGGGCA----CC--ATACAG----AC--GGCATG-------GAAAAGTTCTC---AA-TCATTTC-CATCTC--AGT-TGCCTTCGAAACC-TCC-T-GCACATCC---GCTGGCAGGAC-AAA--ATCCC-TGACACAG-A
gi|5112 : ACCACCCTTCTCTATG---GCTCGGAGAC-C---TGGACA----CC--ATACAG----AC--GGCATG-----AAAAAGTG--CTC---AA-TCACTTC-CAT--CTTAG-ATGCCTTCGAAA----TC-TCATG-CTCATCCGCTGGCAGGAC-AAA--ATCCC-TGACACAG-AGGTTCT
gi|5114 : CTTACTGTATG-AAGC---GAGACGT---TGGACAG--TCT--AT-CAA----A---GGCACA--C-CAAGAAA----CTC---AA-CCATTTC-CATA-C--AGTGTGTCTTC-AAAAA-TTC-TC-GA-GTCA---GATGGCATGAT-AAA--TTTCC-GGATACCC-AAATCCTT-AGCC
gi|5115 : GT---GGAAC-C---TGGACAG--TCT--AC-CAG----C---GTCATG--C-CAGGAAG----CTG---AA-CCACTTC-CACA-C--CACCTGCCTCAGAAAAC-TTC-TCGGC-ATCA---GATGGCAAGAC-AGG--ATCCC-AGACACTG-AGGTCCT
gi|5117 : GT---GAAAC-C---TGGACAG--TTT--AC-CAG----C---GTCACG--C-CAGGAAG----CTG---AA-CCACTTC-CACA-C--CACCTGCCTCAGAAAAC-TTC-TCGGC-ATCA---AGTGGCAAGAC-AGG--ATTCC-AGACACTG-AGGTCCT
gi|5116 : GT---GGAAC-C---TGGACAG--GCTT-AC-CA----------GCTCATGC-CAGGAAAG---CTG---AAACCACTTC-CACA-CC-ACCTTGCCTCAGAAAAC-TTC-TCGCA-TTCA---GATGGCAAGAC-AGG--ATCCC-AGACACTG-AGGTCCT
gi|5118 : AAAC-C---TGGACAG--TCT--AC-CAG----C---GTCACG--C-CAGGAAG----CTG---AA-CCACTTC-CACA-C--CACCTGCCTTAGAAAAC-TTC-TCGGC-ATCA---AGTGACAAGAC-AGG--ATCCC-AGACAC
gi|5119 : ---TGGACAG--TCT--A--CAG----C---GTC-CG--C-CAGGAAG----CTG---AA-CCACTTC-CA-A-C--CACCTG-CTCAGAAAAC-TTC-TCGGC-ATCA---AGTGGCAAGAC-ACAGGATTCC-AGA-ACTG-AGAT
Alignments
lowQualScore : 11 111 111111
lowQualScore : 4 1 6 1 00 222 2 2 5555 33 2 333333 999 3 2 2 0 777777 444 2 7 2 88888 2 1 2 5555 33 33 2 0 1 2 5
lowQualScore : . . . . .. ... . . .... .. . ...... ... . . . . ...... ... . . . ..... . . . .... .. .. . . . . .
lowQualScore : 4 4 8 0 11 000 5 4 0000 22 4 222222 000 6 4 4 1 555555 111 4 1 4 00000 4 8 4 4444 77 77 5 8 7 9 0
consensus : TTGTA-TTGACAACCTTACTGTATGCAAGC---GAGAC-C-TG----GACAG--TCT-AT-----CAG-A-GGCACGC-C-AGGAA--A---CTC---AA-CCACTTCCA-CA-C-AGCNTGCCTTC-GAAAACTTCTCG-G--CGTCAGATGGCAGGACAAA--A--TCCCGGACACCG-AGATCCTT-AGCC
Reference ( family-934 ) : TTGTA-TTGACAACCTTACTNTATGCAAGC---GAGAC-C-TG----GACAG--TCT-AT-----CAG-A-GGCACGC-C-AGGAA--A---CTC---AA-CCACTTCCA-CA-C-AGCNTGCCTTC-GAAAACTTCTCG-G--CGTCAGATGGCAGGACAAA--A--TCCCGGACACCG-AGATCCTT-AGCC
gi|5103 : TTGTA-TTGACAACCTTACTGTATGCAAGC---GAGAC-T-TG----GACAG--TCT-AT-----CAA-A-GGCACAC-C-AAGAA--A---CTC---AA-CCATTTCCA-TA-C-AGTGTGTCTTC-GAAAAATTCTCG-G--AGTCAGATGGCAGGATAAA--A--TTCCGGATACCG-AAATCCTT-AGCC
gi|5104 : TTGTA-TTGACAACCTTACTGTATGCAAGC---GAGAC-T-TG----GACAG--TCT-AT-----CAA-A-GGCACAC-C-AAGAC--T---CTT---AA-CCATTTCCA-TA-C-AGTATGTCTTC-GGAAAATTCTCG-G--TGTCAGATGGCAGGATAAA--A--TTCCGGATACCG-AAATCCTT-AGCC
gi|5105 : TTGTA-TTGACA-CCTTACTGTATGCAAGCC--GAGAC-TATG----GACAG--TCT-AT-----CAA-A-GGCACACTC-A---A--A---CTCTTAAA-CCATTTCCA-TA-C-AGTATGTCTTC-GGAAAATCTCCG-G--TGTCAGATGGCAGGATAAA--AATTCCGGGATACCG-AAATCCTT-AG
gi|5106 : TTGTA-TTGACAACCTTACTGTATGCAAGC---GAGAC-T-TG----GACAG--TCT-AT-----CAT-A-GGCACAC-C-AAGAA--A---CTC---AA-CCATTTCCA-TA-C-AGTGTGTCTTC-GGACAATTCTCG-G--AGTCAGATGACAGGGCAAA--A--TTCCAGATACCG-AAATCTTT-AGCC
gi|5107 : TTGTA-TTGACAACCTTACTGTATGGAAGC---GAGAC-T-TG----GACAG--TCT-AT-----CAA-A-GGCACAC-CAAGAAA--A---CTC---AA-CCATTTCT--TATC-AGTGTGTCTTC-AAAATATTCTCG-G--AGTCAGATGGCAGGATAAA--A--TTCCGGATACCGAAAATCCTT-AGCC
gi|5108 : TTGTT-CTCACAGCATTGCTCTACGGCTGT---GAAAC-C-TG----GACAG--TCT-AC-----CAG-T-GTCACGC-C-AGGAA--A---CTG---AA-CCATTTCCA-CA-C-CACCTGCCTCA-AAAAACTTCTCG-G--CATCAAGTGGCAAGACA
gi|5109 : TGTAATTACCATCCTT-CTATATACAAGA---GAAGC-A-TGAATGGACAGGCTCT-AG-----CAG-A---TATGT-C-ACATA--G---CTC---AA-CTACTTCCATCT-T-AGC-TGTCCTC-GAGA-CTCATTA-G--CATTAAATGGCAGGATAAA--A--TCCCTGATACGG-AGATCCTT-AACC
gi|5110 : GTA-CTGACGCTCTC-CTCTACGATAGC---GAAAC-C-TG----GACAG--TCT-A------CAGCA-GACACGC-T-AAACA--A---CTC---AA-CCACTTTCA-CA-T-GAGTTGCCTCC-CGAGACTTTCCG-
gi|5111 : TA-CTGACCACTCTCCTCTACGCTAGC---GAAAC-C-TG----GACAG--TCT-GTATCTACAGCA-GACACGC-C-AGACA--A---CTC---GA-CCATTTTTA-CA-T-GAGTTGCCTCC-ACAGACTTTTAT-G--CATCAAGTGGAAGAACAAA--A--TTCCATACACGG-AGATCCTTGAGCttg
gi|5112 : ACCACCCTTCTCTATG---GCTCGGAGAC-C-TG----GACA----CC-ATA----CAG-ACGGCATG----AAAAAGTG---CTC---AA-TCACTTCCATCT-T-AG-ATGCCTTC-GAAA---TCTCATGCTCATCCGCTGGCAGGACAAA--A--TCCCTGACACAG-AGGTTCT
gi|5113 : ACCACCCTTCTCTATG---GCTCAGAGAC-C-TG----GGCA----CC-ATA----CAG-ACGGCATG-----GAAA--AGTTCTC---AA-TCATTTCCATCT-C-AG-TTGCCTTC-GAAACCTCCTGC-A--CATCCGCTGGCAGGACAAA--A--TCCCTGACACAG-A
gi|5114 : CTTACTGTATG-AAGC---GAGACGT-TG----GACAG--TCT-AT-----CAA-A-GGCACAC-C-AAGAA--A---CTC---AA-CCATTTCCA-TA-C-AGTGTGTCTTC-AAAAA-TTCTCG-A---GTCAGATGGCATGATAAA--T--TTCCGGATACCC-AAATCCTT-AGCC
gi|5115 : GT---GGAAC-C-TG----GACAG--TCT-AC-----CAG-C-GTCATGC-C-AGGAA--G---CTG---AA-CCACTTCCA-CA-C-CACCTGCCTCA-GAAAACTTCTCG-G--CATCAGATGGCAAGACAGG--A--TCCCAGACACTG-AGGTCCT
gi|5116 : GT---GGAAC-C-TG----GACAG--GCTTAC-----CAG-C-T-CATGC-C-AGGAA--AG--CTG---AAACCACTTCCA-CA-CCACCTTGCCTCA-GAAAACTTCTCG-C--ATTCAGATGGCAAGACAGG--A--TCCCAGACACTG-AGGTCCT
gi|5117 : GT---GAAAC-C-TG----GACAG--TTT-AC-----CAG-C-GTCACGC-C-AGGAA--G---CTG---AA-CCACTTCCA-CA-C-CACCTGCCTCA-GAAAACTTCTCG-G--CATCAAGTGGCAAGACAGG--A--TTCCAGACACTG-AGGTCCT
gi|5118 : AAAC-C-TG----GACAG--TCT-AC-----CAG-C-GTCACGC-C-AGGAA--G---CTG---AA-CCACTTCCA-CA-C-CACCTGCCTTA-GAAAACTTCTCG-G--CATCAAGTGACAAGACAGG--A--TCCCAGACAC
gi|5119 : -TG----GACAG--TCT-A------CAG-C-GTC-CGC-C-AGGAA--G---CTG---AA-CCACTTCCA--A-C-CACCTGC--TCAGAAAACTTCTCG-G--CATCAAGTGGCAAGACACAGGA--TTCCAGA-ACTG-AGAT
Alignments
lowQualScore : 11 111 111111
lowQualScore : 4 1 6 1 00 222 2 2 5555 33 2 333333 999 3 2 2 0 777777 444 2 7 2 88888 2 1 2 5555 33 33 2 0 1 2 5
lowQualScore : . . . . .. ... . . .... .. . ...... ... . . . . ...... ... . . . ..... . . . .... .. .. . . . . .
lowQualScore : 4 4 8 8 11 000 5 4 0000 22 4 222222 000 6 4 4 1 555555 111 4 1 4 00000 4 8 4 4444 77 77 5 8 7 9 0
consensus : TTGTA-TTGACAACCTTACTGTATGCAAGC---GAGAC-C-TG----GACAG--TCT-AT-----CAG-A-GGCACGC-C-AGGAA--A---CTC---AA-CCACTTCCA-CA-C-AGCNTGCCTTC-GAAAACTTCTCG-G--CGTCAGATGGCAGGACAAA--A--TCCCGGACACCG-AGATCCTT-AGCC
Reference ( family-934 ) : TTGTA-TTGACAACCTTACTGTATGCAAGC---GAGAC-C-TG----GACAG--TCT-AT-----CAG-A-GGCACGC-C-AGGAA--A---CTC---AA-CCACTTCCA-CA-C-AGCNTGCCTTC-GAAAACTTCTCG-G--CGTCAGATGGCAGGACAAA--A--TCCCGGACACCG-AGATCCTT-AGCC
gi|5103 : TTGTA-TTGACAACCTTACTGTATGCAAGC---GAGAC-T-TG----GACAG--TCT-AT-----CAA-A-GGCACAC-C-AAGAA--A---CTC---AA-CCATTTCCA-TA-C-AGTGTGTCTTC-GAAAAATTCTCG-G--AGTCAGATGGCAGGATAAA--A--TTCCGGATACCG-AAATCCTT-AGCC
gi|5104 : TTGTA-TTGACAACCTTACTGTATGCAAGC---GAGAC-T-TG----GACAG--TCT-AT-----CAA-A-GGCACAC-C-AAGAC--T---CTT---AA-CCATTTCCA-TA-C-AGTATGTCTTC-GGAAAATTCTCG-G--TGTCAGATGGCAGGATAAA--A--TTCCGGATACCG-AAATCCTT-AGCC
gi|5105 : TTGTA-TTGACA-CCTTACTGTATGCAAGCC--GAGAC-TATG----GACAG--TCT-AT-----CAA-A-GGCACACTC-A---A--A---CTCTTAAA-CCATTTCCA-TA-C-AGTATGTCTTC-GGAAAATCTCCG-G--TGTCAGATGGCAGGATAAA--AATTCCGGGATACCG-AAATCCTT-AG
gi|5106 : TTGTA-TTGACAACCTTACTGTATGCAAGC---GAGAC-T-TG----GACAG--TCT-AT-----CAT-A-GGCACAC-C-AAGAA--A---CTC---AA-CCATTTCCA-TA-C-AGTGTGTCTTC-GGACAATTCTCG-G--AGTCAGATGACAGGGCAAA--A--TTCCAGATACCG-AAATCTTT-AGCC
gi|5107 : TTGTA-TTGACAACCTTACTGTATGGAAGC---GAGAC-T-TG----GACAG--TCT-AT-----CAA-A-GGCACAC-CAAGAAA--A---CTC---AA-CCATTTCT--TATC-AGTGTGTCTTC-AAAATATTCTCG-G--AGTCAGATGGCAGGATAAA--A--TTCCGGATACCGAAAATCCTT-AGCC
gi|5108 : TTGTT-CTCACAGCATTGCTCTACGGCTGT---GAAAC-C-TG----GACAG--TCT-AC-----CAG-T-GTCACGC-C-AGGAA--A---CTG---AA-CCATTTCCA-CA-C-CACCTGCCTCA-AAAAACTTCTCG-G--CATCAAGTGGCAAGACA
gi|5109 : TGTAATTACCATCCTT-CTATATACAAGA---GAAGC-A-TGAATGGACAGGCTCT-AG-----CAG-A---TATGT-C-ACATA--G---CTC---AA-CTACTTCCATCT-T-AGC-TGTCCTC-GAGA-CTCATTA-G--CATTAAATGGCAGGATAAA--A--TCCCTGATACGG-AGATCCTT-AACC
gi|5110 : GTA-CTGACGCTCTC-CTCTACGATAGC---GAAAC-C-TG----GACAG--TCT-A------CAGCA-GACACGC-T-AAACA--A---CTC---AA-CCACTTTCA-CA-T-GAGTTGCCTCC-CGAGACTTTCCG-
gi|5111 : TA-CTGACCACTCTCCTCTACGCTAGC---GAAAC-C-TG----GACAG--TCT-GTATCTACAGCA-GACACGC-C-AGACA--A---CTC---GA-CCATTTTTA-CA-T-GAGTTGCCTCC-ACAGACTTTTAT-G--CATCAAGTGGAAGAACAAA--A--TTCCATACACGG-AGATCCTTGAGCttg
gi|5112 : ACCACCCTTCTCTATG---GCTCGGAGAC-C-TG----GACA----CC-ATA----CAG-ACGGCATG----AAAAAGTG---CTC---AA-TCACTTCCATCT-T-AG-ATGCCTTC-GAAA---TCTCATGCTCATCCGCTGGCAGGACAAA--A--TCCCTGACACAG-AGGTTCT
gi|5113 : ACCACCCTTCTCTATG---GCTCAGAGAC-C-TG----GGCA----CC-ATA----CAG-ACGGCATG-----GAAA--AGTTCTC---AA-TCATTTCCATCT-C-AG-TTGCCTTC-GAAACCTCCTGC-A--CATCCGCTGGCAGGACAAA--A--TCCCTGACACAG-A
gi|5114 : CTTACTGTATG-AAGC---GAGACGT-TG----GACAG--TCT-AT-----CAA-A-GGCACAC-C-AAGAA--A---CTC---AA-CCATTTCCA-TA-C-AGTGTGTCTTC-AAAAA-TTCTCG-A---GTCAGATGGCATGATAAA--T--TTCCGGATACCC-AAATCCTT-AGCC
gi|5115 : GT---GGAAC-C-TG----GACAG--TCT-AC-----CAG-C-GTCATGC-C-AGGAA--G---CTG---AA-CCACTTCCA-CA-C-CACCTGCCTCA-GAAAACTTCTCG-G--CATCAGATGGCAAGACAGG--A--TCCCAGACACTG-AGGTCCT
gi|5116 : GT---GGAAC-C-TG----GACAG--GCTTAC-----CAG-C-T-CATGC-C-AGGAA--AG--CTG---AAACCACTTCCA-CA-CCACCTTGCCTCA-GAAAACTTCTCG-C--ATTCAGATGGCAAGACAGG--A--TCCCAGACACTG-AGGTCCT
gi|5117 : GT---GAAAC-C-TG----GACAG--TTT-AC-----CAG-C-GTCACGC-C-AGGAA--G---CTG---AA-CCACTTCCA-CA-C-CACCTGCCTCA-GAAAACTTCTCG-G--CATCAAGTGGCAAGACAGG--A--TTCCAGACACTG-AGGTCCT
gi|5118 : AAAC-C-TG----GACAG--TCT-AC-----CAG-C-GTCACGC-C-AGGAA--G---CTG---AA-CCACTTCCA-CA-C-CACCTGCCTTA-GAAAACTTCTCG-G--CATCAAGTGACAAGACAGG--A--TCCCAGACAC
gi|5119 : -TG----GACAG--TCT-A------CAG-C-GTC-CGC-C-AGGAA--G---CTG---AA-CCACTTCCA--A-C-CACCTGC--TCAGAAAACTTCTCG-G--CATCAAGTGGCAAGACACAGGA--TTCCAGA-ACTG-AGAT
blockSeqs : A A A G CA TCG G A AATG GC T TATCTA CA G T A AGTT TTA A T T CACCT A A T CTCA GG AT G C A G
blockSeqs : . A A G CA TCA . . . . . TA CA G . . GTG . . T . AGTA . A . TG . . G C . .
blockSeqs : . A A G CA C . . . . . TA AC G . . AG . . T . AGTA . A . TG . . A C . .
blockSeqs : . G A G GA . . . . . . T AC G . . T . . . . AGTG . A . AG . . G C . .
blockSeqs : . T G C GC . . . . . . T A T . . A . . . . AGTG . C . AG . . T G . .
blockSeqs : . C C A CA . . . . . . T A A . . A . . . . CACC . C . CA . . A G . .
blockSeqs : . A T C AT . . . . . . T A A . . A . . . . GAGT . C . CA . . T A . .
blockSeqs : . A T C CT . . . . . . C A G . . A . . . . GAGT . C . CA . . T A .
blockSeqs : A A C A . . . . . . G T G . . G . . . . AGTG . C . CA . . G C .
blockSeqs : . . C . . . . . . . T A G . . A . . . . CACC . C . CA . . A T .
blockSeqs : . G . . . . . . . C A T . . A . . . . CACC . C . AT . . A T .
blockSeqs : . . . . . . C C T . . A . . . . CACC . C . CA . . A T .
blockSeqs : . . . . . . C C T . . G . . . . CACC . C . CA . . A T .
blockSeqs : . . . . . . C C T . . G . . . . AGC . C . CA . . A
blockSeqs : . . . . . . C . . . G . . . . AGA . . . G
blockSeqs : . . . . . C . . . G . . . . AGT . . .
blockSeqCons :
originalCons : TTGTA-TTGACAACCTTACTGTATGCAAGC---GAGAC-C-TG----GACAG--TCT-AT-----CAG-A-GGCACGC-C-AGGAA--A---CTC---AA-CCACTTCCA-CA-C-AGCNTGCCTTC-GAAAACTTCTCG-G--CGTCAGATGGCAGGACAAA--A--TCCCGGACACCG-AGATCCTT-AGCC
finalCons : TTGTA-TTGACAACCTTACTGTATGCAAGC---GAGAC-C-TG----GACAG--TCT-AT-----CAG-A-GGCACGC-C-AGGAA--A---CTC---AA-CCACTTCCA-CA-C-AGCNTGCCTTC-GAAAACTTCTCG-G--CGTCAGATGGCAGGACAAA--A--TCCCGGACACCG-AGATCCTT-AGCC
Alignments
lowQualScore : 11 111 111111
lowQualScore : 4 1 6 1 00 222 2 2 5555 33 2 333333 999 3 2 2 0 777777 444 2 7 2 88888 2 1 2 5555 33 33 2 0 1 2 5
lowQualScore : . . . . .. ... . . .... .. . ...... ... . . . . ...... ... . . . ..... . . . .... .. .. . . . . .
lowQualScore : 4 4 8 8 11 000 5 4 0000 22 4 222222 000 6 4 4 1 555555 111 4 1 4 00000 4 8 4 4444 77 77 5 8 7 9 0
consensus : TTGTA-TTGACAACCTTACTGTATGCAAGC---GAGAC-C-TG----GACAG--TCT-AT-----CAG-A-GGCACGC-C-AGGAA--A---CTC---AA-CCACTTCCA-CA-C-AGCNTGCCTTC-GAAAACTTCTCG-G--CGTCAGATGGCAGGACAAA--A--TCCCGGACACCG-AGATCCTT-AGCC
Reference ( family-934 ) : TTGTA-TTGACAACCTTACTGTATGCAAGC---GAGAC-C-TG----GACAG--TCT-AT-----CAG-A-GGCACGC-C-AGGAA--A---CTC---AA-CCACTTCCA-CA-C-AGCNTGCCTTC-GAAAACTTCTCG-G--CGTCAGATGGCAGGACAAA--A--TCCCGGACACCG-AGATCCTT-AGCC
gi|5103 : TTGTA-TTGACAACCTTACTGTATGCAAGC---GAGAC-T-TG----GACAG--TCT-AT-----CAA-A-GGCACAC-C-AAGAA--A---CTC---AA-CCATTTCCA-TA-C-AGTGTGTCTTC-GAAAAATTCTCG-G--AGTCAGATGGCAGGATAAA--A--TTCCGGATACCG-AAATCCTT-AGCC
gi|5104 : TTGTA-TTGACAACCTTACTGTATGCAAGC---GAGAC-T-TG----GACAG--TCT-AT-----CAA-A-GGCACAC-C-AAGAC--T---CTT---AA-CCATTTCCA-TA-C-AGTATGTCTTC-GGAAAATTCTCG-G--TGTCAGATGGCAGGATAAA--A--TTCCGGATACCG-AAATCCTT-AGCC
gi|5105 : TTGTA-TTGACA-CCTTACTGTATGCAAGCC--GAGAC-TATG----GACAG--TCT-AT-----CAA-A-GGCACACTC-A---A--A---CTCTTAAA-CCATTTCCA-TA-C-AGTATGTCTTC-GGAAAATCTCCG-G--TGTCAGATGGCAGGATAAA--AATTCCGGGATACCG-AAATCCTT-AG
gi|5106 : TTGTA-TTGACAACCTTACTGTATGCAAGC---GAGAC-T-TG----GACAG--TCT-AT-----CAT-A-GGCACAC-C-AAGAA--A---CTC---AA-CCATTTCCA-TA-C-AGTGTGTCTTC-GGACAATTCTCG-G--AGTCAGATGACAGGGCAAA--A--TTCCAGATACCG-AAATCTTT-AGCC
gi|5107 : TTGTA-TTGACAACCTTACTGTATGGAAGC---GAGAC-T-TG----GACAG--TCT-AT-----CAA-A-GGCACAC-CAAGAAA--A---CTC---AA-CCATTTCT--TATC-AGTGTGTCTTC-AAAATATTCTCG-G--AGTCAGATGGCAGGATAAA--A--TTCCGGATACCGAAAATCCTT-AGCC
gi|5108 : TTGTT-CTCACAGCATTGCTCTACGGCTGT---GAAAC-C-TG----GACAG--TCT-AC-----CAG-T-GTCACGC-C-AGGAA--A---CTG---AA-CCATTTCCA-CA-C-CACCTGCCTCA-AAAAACTTCTCG-G--CATCAAGTGGCAAGACA
gi|5109 : TGTAATTACCATCCTT-CTATATACAAGA---GAAGC-A-TGAATGGACAGGCTCT-AG-----CAG-A---TATGT-C-ACATA--G---CTC---AA-CTACTTCCATCT-T-AGC-TGTCCTC-GAGA-CTCATTA-G--CATTAAATGGCAGGATAAA--A--TCCCTGATACGG-AGATCCTT-AACC
gi|5110 : GTA-CTGACGCTCTC-CTCTACGATAGC---GAAAC-C-TG----GACAG--TCT-A------CAGCA-GACACGC-T-AAACA--A---CTC---AA-CCACTTTCA-CA-T-GAGTTGCCTCC-CGAGACTTTCCG-
gi|5111 : TA-CTGACCACTCTCCTCTACGCTAGC---GAAAC-C-TG----GACAG--TCT-GTATCTACAGCA-GACACGC-C-AGACA--A---CTC---GA-CCATTTTTA-CA-T-GAGTTGCCTCC-ACAGACTTTTAT-G--CATCAAGTGGAAGAACAAA--A--TTCCATACACGG-AGATCCTTGAGCttg
gi|5112 : ACCACCCTTCTCTATG---GCTCGGAGAC-C-TG----GACA----CC-ATA----CAG-ACGGCATG----AAAAAGTG---CTC---AA-TCACTTCCATCT-T-AG-ATGCCTTC-GAAA---TCTCATGCTCATCCGCTGGCAGGACAAA--A--TCCCTGACACAG-AGGTTCT
gi|5113 : ACCACCCTTCTCTATG---GCTCAGAGAC-C-TG----GGCA----CC-ATA----CAG-ACGGCATG-----GAAA--AGTTCTC---AA-TCATTTCCATCT-C-AG-TTGCCTTC-GAAACCTCCTGC-A--CATCCGCTGGCAGGACAAA--A--TCCCTGACACAG-A
gi|5114 : CTTACTGTATG-AAGC---GAGACGT-TG----GACAG--TCT-AT-----CAA-A-GGCACAC-C-AAGAA--A---CTC---AA-CCATTTCCA-TA-C-AGTGTGTCTTC-AAAAA-TTCTCG-A---GTCAGATGGCATGATAAA--T--TTCCGGATACCC-AAATCCTT-AGCC
gi|5115 : GT---GGAAC-C-TG----GACAG--TCT-AC-----CAG-C-GTCATGC-C-AGGAA--G---CTG---AA-CCACTTCCA-CA-C-CACCTGCCTCA-GAAAACTTCTCG-G--CATCAGATGGCAAGACAGG--A--TCCCAGACACTG-AGGTCCT
gi|5116 : GT---GGAAC-C-TG----GACAG--GCTTAC-----CAG-C-T-CATGC-C-AGGAA--AG--CTG---AAACCACTTCCA-CA-CCACCTTGCCTCA-GAAAACTTCTCG-C--ATTCAGATGGCAAGACAGG--A--TCCCAGACACTG-AGGTCCT
gi|5117 : GT---GAAAC-C-TG----GACAG--TTT-AC-----CAG-C-GTCACGC-C-AGGAA--G---CTG---AA-CCACTTCCA-CA-C-CACCTGCCTCA-GAAAACTTCTCG-G--CATCAAGTGGCAAGACAGG--A--TTCCAGACACTG-AGGTCCT
gi|5118 : AAAC-C-TG----GACAG--TCT-AC-----CAG-C-GTCACGC-C-AGGAA--G---CTG---AA-CCACTTCCA-CA-C-CACCTGCCTTA-GAAAACTTCTCG-G--CATCAAGTGACAAGACAGG--A--TCCCAGACAC
gi|5119 : -TG----GACAG--TCT-A------CAG-C-GTC-CGC-C-AGGAA--G---CTG---AA-CCACTTCCA--A-C-CACCTGC--TCAGAAAACTTCTCG-G--CATCAAGTGGCAAGACACAGGA--TTCCAGA-ACTG-AGAT