lowQualScore : 0 00 0 0 0000 0 0
lowQualScore : . .. . . .... . .
lowQualScore : 4 66 4 4 9999 4 4
consensus : AGCGAACTAGAAATAAA-G--GAC-ACC-A----CAGAGTCTTCCATGTCTGCTT-CGTACTTG-GATAT
Reference ( gi|84343 ) : AGCGAACTAGAAATAAA-G--GAC-ACC-A----CAGAGTCTTCCATGTCTGCTT-CGTACTTG-GATAT
gi|84354 : AGCGAACTAGAAATAAG-G--GAC-ACC-A----CAGAGTCTTCCATGTCTGCTT-CGTACTTG-GATAT
gi|84344 : AGCGAACTAGAAATAAA-G--GAC-ACCCA----CAGAGTCTTCCATGTCTGCTT-CGTACTTG-GATAT
gi|84370 : AGCGAACTAGAAATAAA-G--GAC-ACC-A----CAGAGTCTTCCATGTCTGCTT-TGTGCTTG-GATAT
gi|84369 : AGCGAACTAGAAATAAA-G--GAC-ACC-A----TAGAGTCTTCCGTGTCTGCTT-CGTACTTG-GATAT
gi|84349 : AGCGAACTAGAAGTAAA-A--GAC-ACC-A----CAGAGTCTTCCATGTCTGCTT-CGTACTTG-GATAT
gi|84348 : AGCGAACTAGAAATGAA-A--GAC-ACC-A----CAGAGTCTTCCATGTCTGCTT-CGTACTTG-GATAT
gi|84346 : AGCGAACTAGAGATAAA-A--GAC-ACC-A----CAGAGTCTTCCATGTCTGCTT-CGTACTTG-GATAT
gi|84359 : AGGGAACTAGAAATAAA-G--GAC-ACC-A----CAGAGTCTTCCATGTCTGCTT-CGTACTTG-GATA
gi|84351 : AGCGAACTAGAAATAAA-T--GAC-ACC-A----CAGAGTCTTCCATGTCTGTTT-CGTACTTG-GATAT
gi|84392 : AGCAAACTAAAAATAAA-G--GAC-ACC-A----CAGAGTCTTTCATGTCTGCTT-CGTACTTG-GATA
gi|84396 : AGCGAACTAGAAATAAA-G--GAC-ACC-A----CAGAGTTTTCCAAGTTTGCTT-CGTACTTG-GATAT
gi|84376 : AGCGAACTAGAAGTAAA-A--GAC-AAC-A----TAGAGTCTTCCATGTCTGCTT-CGTACTTG-GATAT
gi|84380 : AGCAAACTAGTAATAAA-A--GAC-ACC-A----CAGAGTCTTCCATGTCTGCTT-CATACTTG-GATAT
gi|84361 : AGTGAACTAGAAATAAA-A--GAC-ACC-A----CAG--TCTTCCATGTCTGCTT-CGTACTTG-GATAT
gi|84385 : AGCGAACTAGAAATAAA-A--TAC-ACC-A----CAGAGTCTTCCATGTCTGCTT-TGTACTTG-TATAT
gi|84362 : AGCGAACTAGAAATAAA-A--GAC-ACC-A----CTTAGTCTTCCATATCTGCTT-CGTACTTG-GATAT
gi|84386 : AGCGAACT-GAAATAAAAG--GAC-ACC-A----CAGAGTTTCCCATGTCTGCTT-CGTACTTG-GATAT
gi|84340 : AGTGAACTAGAAATAAA-A--GAC-ACT-A----CAGAGTCTTCCATATCTGCTT-CGTAATTG-GATAT
gi|84394 : AGCGAACTAGAAATAAA-GTAGAC--CC-A----CAGAGTCTTCCATGTCTGCTT-CGAATTTG-GATAT
gi|84378 : AGCGAACTAGAAATAAA-A--GAC-ACC-A----CATAGTCTTCTATATCTATTT-CGTACTTG-GATAT
gi|84355 : AGCGAACCTGAAATAAA-A--GAC-ATC-A----CAGGGTCTTCCATATCTGCTT-CGTACTTG-GATA
gi|84342 : AGTGGACTAGAAATGAA-A--GAC-ACC-A----CAGAGTCTTCCATATCTGCTT-TGTATTTG-GATA
gi|84399 : AGCAAACTAGAAATAAA-A--GAC-ACC-A----CAAAGTCTTTCATGACTGCCT-CGTACTTA-GATAT
gi|84384 : AGCGAACTAGAAATAAA-A--GAC-ACC-A----CGGAGTCTTCCATATCTGTTTCCGTACTTC-GATGT
gi|84388 : AGGGAACTAGAAATAAA-A--GAC-ACC-A----CAGAATCCTCCATGTCTGCTT-TGTTTTTG-GATAT
gi|84389 : AGTGAACTGAAAATAAA-G--GAC-ACC-A----CAAAGTCATCCGTATCTGCTT-CGTACTTC-GATAT
gi|84364 : AGTGAACTAGAAATAAA-A--GAC-AAT-A----CAGAGTCATCCATATCTGCTT-TGTACTTA-GATAT
gi|84401 : AGTGAGCTAGAAATAAA-A--GAG-ACC-A----CAGAGTCAGCCATATCTGCTT-CGTACTTG-GGTAT
gi|84407 : AGCGAACTAGAAATAAA-A--GAC-ACT-A----TAGAGTCATCCATATCTGCTT-TGTATTTG-GTTA
gi|84382 : AGTGAACTCGAAATAAA-A--GAC-ATT-G----CAGAGTCTTCCACGTCTGTTT-CGTTCTTG-GATAT
gi|84350 : AGTGAGTTCGAAATAAA-A--GAC-ACC-A----CAGAGTCTTCAATATCTGTTT-CGTACTTC-GATAT
gi|84365 : AGTGAACTCGAGATGAA-A--GAC-ACC-A----CAAAGTCTTCCACATCTGCGT-CGTACTTT-GATAT
gi|84403 : AGCGAACTAAAAATAAA-A--GAC-ACT-A----TAAAGTCTTCCATATCTCCTT-TGTATTCA-GATAT
gi|84400 : AGGGAACTCGAAATAAA-A--CAC-ACC-T----CAGAGCCTTTCACGTCTGCTT-CGTACTTA-GATA
gi|84357 : AGTGAACTCGAAATGAA-A--GAC-ACC-A----CAGGGTCCTCGACATCTGCTT-CATACTTA-GATAT
gi|84387 : AGTGAACTCGAAATAGA-A--GAA-ACC-A----TAGAGTCTTCAACATCTGCTT-CGAACTTG-GATAT
gi|84352 : AGTGAGCTTGAAATAAA-A--GAC-TCC-A----CAGCGCCTTCCACATCTGCTT-CGTACTTT-GATAT
gi|84393 : AGTGAACTCGAAATAGA-A--GAC-ACC-ATGCGCAGTGTCTTTCACGTCTGCTT-CGTACCTA-GATAT
gi|84367 : AGTGAGCTCGAAATAAA-A--GAA-ATA-A----CAGAGTCTTCCACATCTGCTT-CGTATTTG-AATAT
gi|84398 : AGTGAACTCGAAGTAAT-A--GAC-ACC-A----TAGAGTCTTCCACGTCAGTTT-CGTACTTA-GACAT
gi|84368 : AGTGAACACGAAATAAA-A--GAC-ACC-A----CAGATCTTTCCATATCTGCTT-CACATTTG-GATAT
gi|84402 : AGTAAACTCGAAATGTA-A--GAC-ATC-A----CAGAGTCTACCACGTCTACTT-CGTACTTA-GATAT
gi|84391 : AGTGAACTCAAAATAAA-A--GAC-ATC-A----CAGAGTCTTCCACGTCTGCTT-TGTA
gi|84379 : AGTAAACTCGAAATAAA-A--GAC-ACC-A----TGGAGTCTTGTACATCTGCTT-CCTACTTA-GATAT
gi|84373 : AGTGAACTCGAAATGAA-A--GAC-ACC-A--------GTCTTCCACATCTGCTT-CGTGTTTA-AATAT
gi|84374 : AGTGAACTCGAAATGAA-A--GAC-ACC-A--------GTCTTCCACATCTGCTT-CGTGTTTA-AAT
gi|84404 : AGTGAACTCGAAATAAA-A--GAC-ACC-A----T--AGTCTTCCACATCTGCTT-----TTTA-GATAT
gi|84681 : CGAACTAAAAA--------GAC-ACC-A----CAGGGTCTTCCACATTTGCTT-CGTACTTA-GATAT
gi|84506 : aactGAACTAGAAATAAA-G--GAC-ACC-A----CAGAGTCTTCCATGTCTGCTT-CGTACTTG-GATAT
gi|84505 : GAACTAGAAATAAA-G--GAC-ACC-A----CAGAGTCTTCCATGTCTGCTT-CGTACTTG-GATAT
gi|84503 : GAACTAGAAATAAA-G--GAC-ACC-A----CAGAGTCTTCCATGTCTGCTT-CGTACTTG-GATAT
gi|84502 : GAACTAGAAATAAA-G--GAC-ACC-A----CAGAGTCTTCCATGTCTGCTT-CGTACTTG-GATAT
gi|84501 : GAACTAGAAATAAA-G--GAC-ACC-A----CAGAGTCTTCCATGTCTGCTT-CGTACTTG-GATAT
gi|84497 : GAACTAGAAATAAA-G--GAC-ACC-A----CAGAGTCTTCCATGTCTGCTT-CGTACTTG-GATAT
gi|84496 : GAACTAGAAATAAA-G--GAC-ACC-A----CAGAGTCTTCCATGTCTGCTT-CGTACTTG-GATAT
gi|84518 : GAACTAGAAATAAA-G--GAC-ACC-A----CAGAGTCTTCCATGTCTGCTT-TGTACTTG-GATAT
gi|84517 : GAACTAGAAATAAA-G--GAC-ACC-A----CAGAGTCTTCCATGTCTGCTT-CATACTTG-GATAT
gi|84516 : GAACTAGAAATAAA-G--GAC-ACC-A----CAGAGTTTTCCATGTCTGCTT-CGTACTTG-GATAT
gi|84515 : GAACTAGAAATAAA-G--GAC-ACC-A----CAGAGTTTTCCATGTCTGCTT-CGTACTTG-GATAT
gi|84514 : GAACTAGAAATAAA-G--GAC-ACC-A----CAGAGTTTTCCATGTCTGCTT-CGTACTTG-GATAT
gi|84513 : GAACTAGAAATAAA-G--GAC-ACC-A----CAGAGTTTTCCATGTCTGCTT-CGTACTTG-GATAT
gi|84360 : GAACTAGAAATAAA-G--GAC-ACC-A----CAGAATCTTCCATGTCTGCTT-CGTACTTG-GATAT
gi|84512 : aatGAACTAGAAATAAA-G--GAC-ACC-A----CAGAGTCTTCCATGTCTGCTT-CGTACTTG-GAT
gi|84525 : GAACTAGAAATAAA-G--GAC-ACC-A----CAGAGTCGTCCATGTCTGCTT-CGTACTTG-GATAT
gi|84528 : GAACTAGAAATAAA-G--GAC-ACC-A----CAGAGTATTCCATGTCTGCTT-CGTACTTG-GATAT
gi|84527 : GAACTAGAAATAAA-G--GACCACC-A----CAGAGTCTTCCATGTCTGCTT-CGTACTTG-GATAT
gi|84526 : GAACTAGAAATAAA-G--GAC-ACC-A----CAGAGTATTCCATGTCTGCTT-CGTACTTG-GATAT
gi|84504 : GAACTAGAAATAAA-G--GAC-ACC-A----CAGAGTCTTCCATGTCTGCTT-CGTATTTG-GATGT
gi|84534 : GAACTAGAAATAAA-G--GAC-ACC-A----CAGAGTCTTCCAAGTCTGCTT-CGTACTTG-GATA
gi|84537 : GAACTAGAAATAAA-G--GAC-AC--A----CAGAGTCTTCCATGTCTGCTT-CGTACTTG-GATAT
gi|84519 : GAACTAGAAATAAA-G---AC-ACC-A----CAGAGTCTTCCATGTCTGCTT-CGTACTTG-GATAT
gi|84544 : GAACTAGAAATAAA-G--GAA-GCC-A----CAGAGTCTTCCATGTCTGCTT-CGTACTTG-GATAT
gi|84543 : GAACTAGAAATAAA-G--GAC-AAC-A----CGGAGTCTTCCATGTCTGCTT-CGTACTTG-GATAT
gi|84542 : GAACTAGAACTAAA-G--GAC-ACC-A----CAGAGTTTTCCATGTCTGCTT-CGTACTTG-GATAT
gi|84510 : GAACTAGAAATAAA-A--GAC-ACC-A----CAGAGTCTTCCAAGTCTGCTT-CGTACTTG-GATAT
gi|84546 : GAACTAGAAATAAA-G--GAC-ACC-A----CAGAGTCTTCCATGTCTGC-T-CGTACTTG-GATA
gi|84549 : GAACTAGAAATAAA-G--GGC-ACC-A----CAGAGTCTCCCATGTCTGCTT-CGTACTTG-GACAT
gi|84520 : GAACTAGAAATAAA-A--GAT-ATC-A----CAGAGTCTTCCATGTCTGCTT-CGTACTTG-GATAT
gi|84554 : GAAGTAGAAATAAA-G--GAC-AAC-A----CAGAGTCTTCCATGTCTGCTT-CGTACTTG-GATAT
gi|84533 : GAACTAGAAACAAA-G--GAC-ACC-A----CAGAGTCTTCCATGTCTGCTT-CGTACTT--GATAT
gi|84495 : GAACTAGAAGTAAA-A--GAC-ACC-A----CAGAGTCTTCCATATCTGCTT-CGTACTTG-GATA
gi|84551 : GAACTAGAAATAAA-G--GAC-ACC-A----CAGAGCCTTCCATGTCTGCTT-CTTATTTGTGATAT
gi|84531 : GAACTAGAAATAAA-G--GAC-ACT-A----CATAGTCTTCCATATCTGCTT-CGTGTTTG-GATAT
gi|84372 : GAACTAGAAATAAA-A--GAC-ACC-A----CAGCGTCACCCATATCTGCTT-CGTACTTG-GATAT
gi|84482 : aatGAACTCGAAATAAA-G--GAC-ACC-A----CAGAATCTGACATATCTGCTT-CGTATTTG-GATAT
gi|84529 : tGAACTCGAAATAAA-G--GAC-ACC-A----CAGAATCTGACATATCTGCTT-CATATTTG-GATAT
gi|84535 : GAACTCGAAATAAA-G--GAC-ACC-A----CAGATTCTGACATATCTGCTT-CATATTTG-GATAT
gi|84553 : GAACTCGACATAAA-G--GAC-ACC-A----CAGAATCTGACATATCTGCTT-CATATTTG-GATAT
gi|84522 : GAACTCGAAATAAA-G--GAC-ACC-A----CAGAATCTGACAGATCTGCTT-CATATTTG-GATAT
gi|84483 : GAACTAGAAATAGA-A--GAC-ACC-A----CAGAGTCTTCCATATCTGCTT-TTTATTT
gi|84541 : tGAACTCGATATAAA-T--GAC-ACC-A----CAGAATCTTACATATCTGCTT-CATATTTG-GATATa
gi|84536 : GAACTCGACATAAA-G--GAC-ACC-A----CAGAATCTGACATATCTGCTT-CATATTTA-GATAT
gi|84545 : GAACTCAGAATAAC-A--TAC-ACC-A----CAGAGTCTTCCACATCTGCTT-CATACTTA-GATAT
gi|84371 : GAACTCGATATAA-----GAC-ACC-A----CAGGGTCTTCCACATCTGCTT-CATATTTA-GATAT
gi|84682 : aatAACTAGAAATAAA-G--GAC-ACC-A----CAGAGTCTTTCATGTCTGCTT-CGTACTT--GATAT
gi|84375 : AACTAGAAATAAA-A--GAC-ACC-A----CAGAGTCATCCATATCTGCTT-GGTATGTG-GATAT
gi|84679 : agttAACTCGAAATAAA-G--GAC-ACC-A----CAGAATCTGACATATCTGCTT-CATATTTG-GATAT
gi|84717 : GAAATAAA-G--GAC-ACC-A----CAGAGTCTTCTATGTCTGCTT-CGTACTTG-GATAT
gi|84724 : AAATAAA-G--GAC-ACC-A----CAGAGTCTTCCATGTCTGCTT-CGTATTTG-GATAT
Alignments
lowQualScore : 0 00 0 0 0000 0 0
lowQualScore : . .. . . .... . .
lowQualScore : 4 66 4 4 9999 4 4
consensus : AGCGAACTAGAAATAAA-G--GAC-ACC-A----CAGAGTCTTCCATGTCTGCTT-CGTACTTG-GATAT
Reference ( family-92 ) : AGCGAACTAGAAATAAA-G--GAC-ACC-A----CAGAGTCTTCCATGTCTGCTT-CGTACTTG-GATAT
gi|84340 : AGTGAACTAGAAATAAA-A--GAC-ACT-A----CAGAGTCTTCCATATCTGCTT-CGTAATTG-GATAT
gi|84342 : AGTGGACTAGAAATGAA-A--GAC-ACC-A----CAGAGTCTTCCATATCTGCTT-TGTATTTG-GATA
gi|84343 : AGCGAACTAGAAATAAA-G--GAC-ACC-A----CAGAGTCTTCCATGTCTGCTT-CGTACTTG-GATAT
gi|84344 : AGCGAACTAGAAATAAA-G--GAC-ACCCA----CAGAGTCTTCCATGTCTGCTT-CGTACTTG-GATAT
gi|84346 : AGCGAACTAGAGATAAA-A--GAC-ACC-A----CAGAGTCTTCCATGTCTGCTT-CGTACTTG-GATAT
gi|84348 : AGCGAACTAGAAATGAA-A--GAC-ACC-A----CAGAGTCTTCCATGTCTGCTT-CGTACTTG-GATAT
gi|84349 : AGCGAACTAGAAGTAAA-A--GAC-ACC-A----CAGAGTCTTCCATGTCTGCTT-CGTACTTG-GATAT
gi|84350 : AGTGAGTTCGAAATAAA-A--GAC-ACC-A----CAGAGTCTTCAATATCTGTTT-CGTACTTC-GATAT
gi|84351 : AGCGAACTAGAAATAAA-T--GAC-ACC-A----CAGAGTCTTCCATGTCTGTTT-CGTACTTG-GATAT
gi|84352 : AGTGAGCTTGAAATAAA-A--GAC-TCC-A----CAGCGCCTTCCACATCTGCTT-CGTACTTT-GATAT
gi|84354 : AGCGAACTAGAAATAAG-G--GAC-ACC-A----CAGAGTCTTCCATGTCTGCTT-CGTACTTG-GATAT
gi|84355 : AGCGAACCTGAAATAAA-A--GAC-ATC-A----CAGGGTCTTCCATATCTGCTT-CGTACTTG-GATA
gi|84357 : AGTGAACTCGAAATGAA-A--GAC-ACC-A----CAGGGTCCTCGACATCTGCTT-CATACTTA-GATAT
gi|84359 : AGGGAACTAGAAATAAA-G--GAC-ACC-A----CAGAGTCTTCCATGTCTGCTT-CGTACTTG-GATA
gi|84360 : GAACTAGAAATAAA-G--GAC-ACC-A----CAGAATCTTCCATGTCTGCTT-CGTACTTG-GATAT
gi|84361 : aatAGTGAACTAGAAATAAA-A--GAC-ACC-A----CAG--TCTTCCATGTCTGCTT-CGTACTTG-GATAT
gi|84362 : AGCGAACTAGAAATAAA-A--GAC-ACC-A----CTTAGTCTTCCATATCTGCTT-CGTACTTG-GATAT
gi|84364 : AGTGAACTAGAAATAAA-A--GAC-AAT-A----CAGAGTCATCCATATCTGCTT-TGTACTTA-GATAT
gi|84365 : AGTGAACTCGAGATGAA-A--GAC-ACC-A----CAAAGTCTTCCACATCTGCGT-CGTACTTT-GATAT
gi|84367 : AGTGAGCTCGAAATAAA-A--GAA-ATA-A----CAGAGTCTTCCACATCTGCTT-CGTATTTG-AATAT
gi|84368 : AGTGAACACGAAATAAA-A--GAC-ACC-A----CAGATCTTTCCATATCTGCTT-CACATTTG-GATAT
gi|84369 : AGCGAACTAGAAATAAA-G--GAC-ACC-A----TAGAGTCTTCCGTGTCTGCTT-CGTACTTG-GATAT
gi|84370 : AGCGAACTAGAAATAAA-G--GAC-ACC-A----CAGAGTCTTCCATGTCTGCTT-TGTGCTTG-GATAT
gi|84371 : GAACTCGATATAA-----GAC-ACC-A----CAGGGTCTTCCACATCTGCTT-CATATTTA-GATAT
gi|84372 : aatGAACTAGAAATAAA-A--GAC-ACC-A----CAGCGTCACCCATATCTGCTT-CGTACTTG-GATAT
gi|84373 : aatAGTGAACTCGAAATGAA-A--GAC-ACC-A--------GTCTTCCACATCTGCTT-CGTGTTTA-AATAT
gi|84374 : AGTGAACTCGAAATGAA-A--GAC-ACC-A--------GTCTTCCACATCTGCTT-CGTGTTTA-AAT
gi|84375 : AACTAGAAATAAA-A--GAC-ACC-A----CAGAGTCATCCATATCTGCTT-GGTATGTG-GATAT
gi|84376 : agttAGCGAACTAGAAGTAAA-A--GAC-AAC-A----TAGAGTCTTCCATGTCTGCTT-CGTACTTG-GATAT
gi|84378 : AGCGAACTAGAAATAAA-A--GAC-ACC-A----CATAGTCTTCTATATCTATTT-CGTACTTG-GATAT
gi|84379 : AGTAAACTCGAAATAAA-A--GAC-ACC-A----TGGAGTCTTGTACATCTGCTT-CCTACTTA-GATAT
gi|84380 : AGCAAACTAGTAATAAA-A--GAC-ACC-A----CAGAGTCTTCCATGTCTGCTT-CATACTTG-GATAT
gi|84382 : AGTGAACTCGAAATAAA-A--GAC-ATT-G----CAGAGTCTTCCACGTCTGTTT-CGTTCTTG-GATAT
gi|84384 : AGCGAACTAGAAATAAA-A--GAC-ACC-A----CGGAGTCTTCCATATCTGTTTCCGTACTTC-GATGT
gi|84385 : AGCGAACTAGAAATAAA-A--TAC-ACC-A----CAGAGTCTTCCATGTCTGCTT-TGTACTTG-TATAT
gi|84386 : AGCGAACT-GAAATAAAAG--GAC-ACC-A----CAGAGTTTCCCATGTCTGCTT-CGTACTTG-GATAT
gi|84387 : AGTGAACTCGAAATAGA-A--GAA-ACC-A----TAGAGTCTTCAACATCTGCTT-CGAACTTG-GATAT
gi|84388 : AGGGAACTAGAAATAAA-A--GAC-ACC-A----CAGAATCCTCCATGTCTGCTT-TGTTTTTG-GATAT
gi|84389 : AGTGAACTGAAAATAAA-G--GAC-ACC-A----CAAAGTCATCCGTATCTGCTT-CGTACTTC-GATAT
gi|84391 : AGTGAACTCAAAATAAA-A--GAC-ATC-A----CAGAGTCTTCCACGTCTGCTT-TGTA
gi|84392 : AGCAAACTAAAAATAAA-G--GAC-ACC-A----CAGAGTCTTTCATGTCTGCTT-CGTACTTG-GATA
gi|84393 : AGTGAACTCGAAATAGA-A--GAC-ACC-ATGCGCAGTGTCTTTCACGTCTGCTT-CGTACCTA-GATAT
gi|84394 : AGCGAACTAGAAATAAA-GTAGAC--CC-A----CAGAGTCTTCCATGTCTGCTT-CGAATTTG-GATAT
gi|84396 : AGCGAACTAGAAATAAA-G--GAC-ACC-A----CAGAGTTTTCCAAGTTTGCTT-CGTACTTG-GATAT
gi|84398 : AGTGAACTCGAAGTAAT-A--GAC-ACC-A----TAGAGTCTTCCACGTCAGTTT-CGTACTTA-GACAT
gi|84399 : AGCAAACTAGAAATAAA-A--GAC-ACC-A----CAAAGTCTTTCATGACTGCCT-CGTACTTA-GATAT
gi|84400 : AGGGAACTCGAAATAAA-A--CAC-ACC-T----CAGAGCCTTTCACGTCTGCTT-CGTACTTA-GATA
gi|84401 : AGTGAGCTAGAAATAAA-A--GAG-ACC-A----CAGAGTCAGCCATATCTGCTT-CGTACTTG-GGTAT
gi|84402 : AGTAAACTCGAAATGTA-A--GAC-ATC-A----CAGAGTCTACCACGTCTACTT-CGTACTTA-GATAT
gi|84403 : AGCGAACTAAAAATAAA-A--GAC-ACT-A----TAAAGTCTTCCATATCTCCTT-TGTATTCA-GATAT
gi|84404 : AGTGAACTCGAAATAAA-A--GAC-ACC-A----T--AGTCTTCCACATCTGCTT-----TTTA-GATAT
gi|84407 : AGCGAACTAGAAATAAA-A--GAC-ACT-A----TAGAGTCATCCATATCTGCTT-TGTATTTG-GTTA
gi|84482 : GAACTCGAAATAAA-G--GAC-ACC-A----CAGAATCTGACATATCTGCTT-CGTATTTG-GATAT
gi|84483 : tGAACTAGAAATAGA-A--GAC-ACC-A----CAGAGTCTTCCATATCTGCTT-TTTATTT
gi|84495 : tGAACTAGAAGTAAA-A--GAC-ACC-A----CAGAGTCTTCCATATCTGCTT-CGTACTTG-GATAa
gi|84496 : GAACTAGAAATAAA-G--GAC-ACC-A----CAGAGTCTTCCATGTCTGCTT-CGTACTTG-GATAT
gi|84497 : GAACTAGAAATAAA-G--GAC-ACC-A----CAGAGTCTTCCATGTCTGCTT-CGTACTTG-GATAT
gi|84501 : GAACTAGAAATAAA-G--GAC-ACC-A----CAGAGTCTTCCATGTCTGCTT-CGTACTTG-GATAT
gi|84502 : GAACTAGAAATAAA-G--GAC-ACC-A----CAGAGTCTTCCATGTCTGCTT-CGTACTTG-GATAT
gi|84503 : GAACTAGAAATAAA-G--GAC-ACC-A----CAGAGTCTTCCATGTCTGCTT-CGTACTTG-GATAT
gi|84504 : GAACTAGAAATAAA-G--GAC-ACC-A----CAGAGTCTTCCATGTCTGCTT-CGTATTTG-GATGT
gi|84505 : GAACTAGAAATAAA-G--GAC-ACC-A----CAGAGTCTTCCATGTCTGCTT-CGTACTTG-GATAT
gi|84506 : GAACTAGAAATAAA-G--GAC-ACC-A----CAGAGTCTTCCATGTCTGCTT-CGTACTTG-GATAT
gi|84510 : GAACTAGAAATAAA-A--GAC-ACC-A----CAGAGTCTTCCAAGTCTGCTT-CGTACTTG-GATAT
gi|84512 : GAACTAGAAATAAA-G--GAC-ACC-A----CAGAGTCTTCCATGTCTGCTT-CGTACTTG-GAT
gi|84513 : GAACTAGAAATAAA-G--GAC-ACC-A----CAGAGTTTTCCATGTCTGCTT-CGTACTTG-GATAT
gi|84514 : GAACTAGAAATAAA-G--GAC-ACC-A----CAGAGTTTTCCATGTCTGCTT-CGTACTTG-GATAT
gi|84515 : GAACTAGAAATAAA-G--GAC-ACC-A----CAGAGTTTTCCATGTCTGCTT-CGTACTTG-GATAT
gi|84516 : GAACTAGAAATAAA-G--GAC-ACC-A----CAGAGTTTTCCATGTCTGCTT-CGTACTTG-GATAT
gi|84517 : GAACTAGAAATAAA-G--GAC-ACC-A----CAGAGTCTTCCATGTCTGCTT-CATACTTG-GATAT
gi|84518 : GAACTAGAAATAAA-G--GAC-ACC-A----CAGAGTCTTCCATGTCTGCTT-TGTACTTG-GATAT
gi|84519 : GAACTAGAAATAAA-G---AC-ACC-A----CAGAGTCTTCCATGTCTGCTT-CGTACTTG-GATAT
gi|84520 : GAACTAGAAATAAA-A--GAT-ATC-A----CAGAGTCTTCCATGTCTGCTT-CGTACTTG-GATAT
gi|84522 : GAACTCGAAATAAA-G--GAC-ACC-A----CAGAATCTGACAGATCTGCTT-CATATTTG-GATAT
gi|84525 : GAACTAGAAATAAA-G--GAC-ACC-A----CAGAGTCGTCCATGTCTGCTT-CGTACTTG-GATAT
gi|84526 : GAACTAGAAATAAA-G--GAC-ACC-A----CAGAGTATTCCATGTCTGCTT-CGTACTTG-GATAT
gi|84527 : GAACTAGAAATAAA-G--GACCACC-A----CAGAGTCTTCCATGTCTGCTT-CGTACTTG-GATAT
gi|84528 : GAACTAGAAATAAA-G--GAC-ACC-A----CAGAGTATTCCATGTCTGCTT-CGTACTTG-GATAT
gi|84529 : GAACTCGAAATAAA-G--GAC-ACC-A----CAGAATCTGACATATCTGCTT-CATATTTG-GATAT
gi|84531 : GAACTAGAAATAAA-G--GAC-ACT-A----CATAGTCTTCCATATCTGCTT-CGTGTTTG-GATAT
gi|84533 : GAACTAGAAACAAA-G--GAC-ACC-A----CAGAGTCTTCCATGTCTGCTT-CGTACTT--GATAT
gi|84534 : GAACTAGAAATAAA-G--GAC-ACC-A----CAGAGTCTTCCAAGTCTGCTT-CGTACTTG-GATA
gi|84535 : GAACTCGAAATAAA-G--GAC-ACC-A----CAGATTCTGACATATCTGCTT-CATATTTG-GATAT
gi|84536 : GAACTCGACATAAA-G--GAC-ACC-A----CAGAATCTGACATATCTGCTT-CATATTTA-GATAT
gi|84537 : GAACTAGAAATAAA-G--GAC-AC--A----CAGAGTCTTCCATGTCTGCTT-CGTACTTG-GATAT
gi|84541 : GAACTCGATATAAA-T--GAC-ACC-A----CAGAATCTTACATATCTGCTT-CATATTTG-GATAT
gi|84542 : GAACTAGAACTAAA-G--GAC-ACC-A----CAGAGTTTTCCATGTCTGCTT-CGTACTTG-GATAT
gi|84543 : GAACTAGAAATAAA-G--GAC-AAC-A----CGGAGTCTTCCATGTCTGCTT-CGTACTTG-GATAT
gi|84544 : GAACTAGAAATAAA-G--GAA-GCC-A----CAGAGTCTTCCATGTCTGCTT-CGTACTTG-GATAT
gi|84545 : GAACTCAGAATAAC-A--TAC-ACC-A----CAGAGTCTTCCACATCTGCTT-CATACTTA-GATAT
gi|84546 : GAACTAGAAATAAA-G--GAC-ACC-A----CAGAGTCTTCCATGTCTGC-T-CGTACTTG-GATA
gi|84549 : GAACTAGAAATAAA-G--GGC-ACC-A----CAGAGTCTCCCATGTCTGCTT-CGTACTTG-GACAT
gi|84551 : GAACTAGAAATAAA-G--GAC-ACC-A----CAGAGCCTTCCATGTCTGCTT-CTTATTTGTGATAT
gi|84553 : GAACTCGACATAAA-G--GAC-ACC-A----CAGAATCTGACATATCTGCTT-CATATTTG-GATAT
gi|84554 : GAAGTAGAAATAAA-G--GAC-AAC-A----CAGAGTCTTCCATGTCTGCTT-CGTACTTG-GATAT
gi|84679 : AACTCGAAATAAA-G--GAC-ACC-A----CAGAATCTGACATATCTGCTT-CATATTTG-GATAT
gi|84681 : CGAACTAAAAA--------GAC-ACC-A----CAGGGTCTTCCACATTTGCTT-CGTACTTA-GATAT
gi|84682 : aactAACTAGAAATAAA-G--GAC-ACC-A----CAGAGTCTTTCATGTCTGCTT-CGTACTT--GATAT
gi|84717 : GAAATAAA-G--GAC-ACC-A----CAGAGTCTTCTATGTCTGCTT-CGTACTTG-GATAT
gi|84724 : AAATAAA-G--GAC-ACC-A----CAGAGTCTTCCATGTCTGCTT-CGTATTTG-GATAT
Alignments
lowQualScore : 0 00 0 0 0000 0 0
lowQualScore : . .. . . .... . .
lowQualScore : 4 66 4 4 9999 4 4
consensus : AGCGAACTAGAAATAAA-G--GAC-ACC-A----CAGAGTCTTCCATGTCTGCTT-CGTACTTG-GATAT
Reference ( family-92 ) : AGCGAACTAGAAATAAA-G--GAC-ACC-A----CAGAGTCTTCCATGTCTGCTT-CGTACTTG-GATAT
gi|84340 : AGTGAACTAGAAATAAA-A--GAC-ACT-A----CAGAGTCTTCCATATCTGCTT-CGTAATTG-GATAT
gi|84342 : AGTGGACTAGAAATGAA-A--GAC-ACC-A----CAGAGTCTTCCATATCTGCTT-TGTATTTG-GATA
gi|84343 : AGCGAACTAGAAATAAA-G--GAC-ACC-A----CAGAGTCTTCCATGTCTGCTT-CGTACTTG-GATAT
gi|84344 : AGCGAACTAGAAATAAA-G--GAC-ACCCA----CAGAGTCTTCCATGTCTGCTT-CGTACTTG-GATAT
gi|84346 : AGCGAACTAGAGATAAA-A--GAC-ACC-A----CAGAGTCTTCCATGTCTGCTT-CGTACTTG-GATAT
gi|84348 : AGCGAACTAGAAATGAA-A--GAC-ACC-A----CAGAGTCTTCCATGTCTGCTT-CGTACTTG-GATAT
gi|84349 : AGCGAACTAGAAGTAAA-A--GAC-ACC-A----CAGAGTCTTCCATGTCTGCTT-CGTACTTG-GATAT
gi|84350 : AGTGAGTTCGAAATAAA-A--GAC-ACC-A----CAGAGTCTTCAATATCTGTTT-CGTACTTC-GATAT
gi|84351 : AGCGAACTAGAAATAAA-T--GAC-ACC-A----CAGAGTCTTCCATGTCTGTTT-CGTACTTG-GATAT
gi|84352 : AGTGAGCTTGAAATAAA-A--GAC-TCC-A----CAGCGCCTTCCACATCTGCTT-CGTACTTT-GATAT
gi|84354 : AGCGAACTAGAAATAAG-G--GAC-ACC-A----CAGAGTCTTCCATGTCTGCTT-CGTACTTG-GATAT
gi|84355 : AGCGAACCTGAAATAAA-A--GAC-ATC-A----CAGGGTCTTCCATATCTGCTT-CGTACTTG-GATA
gi|84357 : AGTGAACTCGAAATGAA-A--GAC-ACC-A----CAGGGTCCTCGACATCTGCTT-CATACTTA-GATAT
gi|84359 : AGGGAACTAGAAATAAA-G--GAC-ACC-A----CAGAGTCTTCCATGTCTGCTT-CGTACTTG-GATA
gi|84360 : GAACTAGAAATAAA-G--GAC-ACC-A----CAGAATCTTCCATGTCTGCTT-CGTACTTG-GATAT
gi|84361 : aatAGTGAACTAGAAATAAA-A--GAC-ACC-A----CAG--TCTTCCATGTCTGCTT-CGTACTTG-GATAT
gi|84362 : AGCGAACTAGAAATAAA-A--GAC-ACC-A----CTTAGTCTTCCATATCTGCTT-CGTACTTG-GATAT
gi|84364 : AGTGAACTAGAAATAAA-A--GAC-AAT-A----CAGAGTCATCCATATCTGCTT-TGTACTTA-GATAT
gi|84365 : AGTGAACTCGAGATGAA-A--GAC-ACC-A----CAAAGTCTTCCACATCTGCGT-CGTACTTT-GATAT
gi|84367 : AGTGAGCTCGAAATAAA-A--GAA-ATA-A----CAGAGTCTTCCACATCTGCTT-CGTATTTG-AATAT
gi|84368 : AGTGAACACGAAATAAA-A--GAC-ACC-A----CAGATCTTTCCATATCTGCTT-CACATTTG-GATAT
gi|84369 : AGCGAACTAGAAATAAA-G--GAC-ACC-A----TAGAGTCTTCCGTGTCTGCTT-CGTACTTG-GATAT
gi|84370 : AGCGAACTAGAAATAAA-G--GAC-ACC-A----CAGAGTCTTCCATGTCTGCTT-TGTGCTTG-GATAT
gi|84371 : GAACTCGATATAA-----GAC-ACC-A----CAGGGTCTTCCACATCTGCTT-CATATTTA-GATAT
gi|84372 : aatGAACTAGAAATAAA-A--GAC-ACC-A----CAGCGTCACCCATATCTGCTT-CGTACTTG-GATAT
gi|84373 : aatAGTGAACTCGAAATGAA-A--GAC-ACC-A--------GTCTTCCACATCTGCTT-CGTGTTTA-AATAT
gi|84374 : AGTGAACTCGAAATGAA-A--GAC-ACC-A--------GTCTTCCACATCTGCTT-CGTGTTTA-AAT
gi|84375 : AACTAGAAATAAA-A--GAC-ACC-A----CAGAGTCATCCATATCTGCTT-GGTATGTG-GATAT
gi|84376 : agttAGCGAACTAGAAGTAAA-A--GAC-AAC-A----TAGAGTCTTCCATGTCTGCTT-CGTACTTG-GATAT
gi|84378 : AGCGAACTAGAAATAAA-A--GAC-ACC-A----CATAGTCTTCTATATCTATTT-CGTACTTG-GATAT
gi|84379 : AGTAAACTCGAAATAAA-A--GAC-ACC-A----TGGAGTCTTGTACATCTGCTT-CCTACTTA-GATAT
gi|84380 : AGCAAACTAGTAATAAA-A--GAC-ACC-A----CAGAGTCTTCCATGTCTGCTT-CATACTTG-GATAT
gi|84382 : AGTGAACTCGAAATAAA-A--GAC-ATT-G----CAGAGTCTTCCACGTCTGTTT-CGTTCTTG-GATAT
gi|84384 : AGCGAACTAGAAATAAA-A--GAC-ACC-A----CGGAGTCTTCCATATCTGTTTCCGTACTTC-GATGT
gi|84385 : AGCGAACTAGAAATAAA-A--TAC-ACC-A----CAGAGTCTTCCATGTCTGCTT-TGTACTTG-TATAT
gi|84386 : AGCGAACT-GAAATAAAAG--GAC-ACC-A----CAGAGTTTCCCATGTCTGCTT-CGTACTTG-GATAT
gi|84387 : AGTGAACTCGAAATAGA-A--GAA-ACC-A----TAGAGTCTTCAACATCTGCTT-CGAACTTG-GATAT
gi|84388 : AGGGAACTAGAAATAAA-A--GAC-ACC-A----CAGAATCCTCCATGTCTGCTT-TGTTTTTG-GATAT
gi|84389 : AGTGAACTGAAAATAAA-G--GAC-ACC-A----CAAAGTCATCCGTATCTGCTT-CGTACTTC-GATAT
gi|84391 : AGTGAACTCAAAATAAA-A--GAC-ATC-A----CAGAGTCTTCCACGTCTGCTT-TGTA
gi|84392 : AGCAAACTAAAAATAAA-G--GAC-ACC-A----CAGAGTCTTTCATGTCTGCTT-CGTACTTG-GATA
gi|84393 : AGTGAACTCGAAATAGA-A--GAC-ACC-ATGCGCAGTGTCTTTCACGTCTGCTT-CGTACCTA-GATAT
gi|84394 : AGCGAACTAGAAATAAA-GTAGAC--CC-A----CAGAGTCTTCCATGTCTGCTT-CGAATTTG-GATAT
gi|84396 : AGCGAACTAGAAATAAA-G--GAC-ACC-A----CAGAGTTTTCCAAGTTTGCTT-CGTACTTG-GATAT
gi|84398 : AGTGAACTCGAAGTAAT-A--GAC-ACC-A----TAGAGTCTTCCACGTCAGTTT-CGTACTTA-GACAT
gi|84399 : AGCAAACTAGAAATAAA-A--GAC-ACC-A----CAAAGTCTTTCATGACTGCCT-CGTACTTA-GATAT
gi|84400 : AGGGAACTCGAAATAAA-A--CAC-ACC-T----CAGAGCCTTTCACGTCTGCTT-CGTACTTA-GATA
gi|84401 : AGTGAGCTAGAAATAAA-A--GAG-ACC-A----CAGAGTCAGCCATATCTGCTT-CGTACTTG-GGTAT
gi|84402 : AGTAAACTCGAAATGTA-A--GAC-ATC-A----CAGAGTCTACCACGTCTACTT-CGTACTTA-GATAT
gi|84403 : AGCGAACTAAAAATAAA-A--GAC-ACT-A----TAAAGTCTTCCATATCTCCTT-TGTATTCA-GATAT
gi|84404 : AGTGAACTCGAAATAAA-A--GAC-ACC-A----T--AGTCTTCCACATCTGCTT-----TTTA-GATAT
gi|84407 : AGCGAACTAGAAATAAA-A--GAC-ACT-A----TAGAGTCATCCATATCTGCTT-TGTATTTG-GTTA
gi|84482 : GAACTCGAAATAAA-G--GAC-ACC-A----CAGAATCTGACATATCTGCTT-CGTATTTG-GATAT
gi|84483 : tGAACTAGAAATAGA-A--GAC-ACC-A----CAGAGTCTTCCATATCTGCTT-TTTATTT
gi|84495 : tGAACTAGAAGTAAA-A--GAC-ACC-A----CAGAGTCTTCCATATCTGCTT-CGTACTTG-GATAa
gi|84496 : GAACTAGAAATAAA-G--GAC-ACC-A----CAGAGTCTTCCATGTCTGCTT-CGTACTTG-GATAT
gi|84497 : GAACTAGAAATAAA-G--GAC-ACC-A----CAGAGTCTTCCATGTCTGCTT-CGTACTTG-GATAT
gi|84501 : GAACTAGAAATAAA-G--GAC-ACC-A----CAGAGTCTTCCATGTCTGCTT-CGTACTTG-GATAT
gi|84502 : GAACTAGAAATAAA-G--GAC-ACC-A----CAGAGTCTTCCATGTCTGCTT-CGTACTTG-GATAT
gi|84503 : GAACTAGAAATAAA-G--GAC-ACC-A----CAGAGTCTTCCATGTCTGCTT-CGTACTTG-GATAT
gi|84504 : GAACTAGAAATAAA-G--GAC-ACC-A----CAGAGTCTTCCATGTCTGCTT-CGTATTTG-GATGT
gi|84505 : GAACTAGAAATAAA-G--GAC-ACC-A----CAGAGTCTTCCATGTCTGCTT-CGTACTTG-GATAT
gi|84506 : GAACTAGAAATAAA-G--GAC-ACC-A----CAGAGTCTTCCATGTCTGCTT-CGTACTTG-GATAT
gi|84510 : GAACTAGAAATAAA-A--GAC-ACC-A----CAGAGTCTTCCAAGTCTGCTT-CGTACTTG-GATAT
gi|84512 : GAACTAGAAATAAA-G--GAC-ACC-A----CAGAGTCTTCCATGTCTGCTT-CGTACTTG-GAT
gi|84513 : GAACTAGAAATAAA-G--GAC-ACC-A----CAGAGTTTTCCATGTCTGCTT-CGTACTTG-GATAT
gi|84514 : GAACTAGAAATAAA-G--GAC-ACC-A----CAGAGTTTTCCATGTCTGCTT-CGTACTTG-GATAT
gi|84515 : GAACTAGAAATAAA-G--GAC-ACC-A----CAGAGTTTTCCATGTCTGCTT-CGTACTTG-GATAT
gi|84516 : GAACTAGAAATAAA-G--GAC-ACC-A----CAGAGTTTTCCATGTCTGCTT-CGTACTTG-GATAT
gi|84517 : GAACTAGAAATAAA-G--GAC-ACC-A----CAGAGTCTTCCATGTCTGCTT-CATACTTG-GATAT
gi|84518 : GAACTAGAAATAAA-G--GAC-ACC-A----CAGAGTCTTCCATGTCTGCTT-TGTACTTG-GATAT
gi|84519 : GAACTAGAAATAAA-G---AC-ACC-A----CAGAGTCTTCCATGTCTGCTT-CGTACTTG-GATAT
gi|84520 : GAACTAGAAATAAA-A--GAT-ATC-A----CAGAGTCTTCCATGTCTGCTT-CGTACTTG-GATAT
gi|84522 : GAACTCGAAATAAA-G--GAC-ACC-A----CAGAATCTGACAGATCTGCTT-CATATTTG-GATAT
gi|84525 : GAACTAGAAATAAA-G--GAC-ACC-A----CAGAGTCGTCCATGTCTGCTT-CGTACTTG-GATAT
gi|84526 : GAACTAGAAATAAA-G--GAC-ACC-A----CAGAGTATTCCATGTCTGCTT-CGTACTTG-GATAT
gi|84527 : GAACTAGAAATAAA-G--GACCACC-A----CAGAGTCTTCCATGTCTGCTT-CGTACTTG-GATAT
gi|84528 : GAACTAGAAATAAA-G--GAC-ACC-A----CAGAGTATTCCATGTCTGCTT-CGTACTTG-GATAT
gi|84529 : GAACTCGAAATAAA-G--GAC-ACC-A----CAGAATCTGACATATCTGCTT-CATATTTG-GATAT
gi|84531 : GAACTAGAAATAAA-G--GAC-ACT-A----CATAGTCTTCCATATCTGCTT-CGTGTTTG-GATAT
gi|84533 : GAACTAGAAACAAA-G--GAC-ACC-A----CAGAGTCTTCCATGTCTGCTT-CGTACTT--GATAT
gi|84534 : GAACTAGAAATAAA-G--GAC-ACC-A----CAGAGTCTTCCAAGTCTGCTT-CGTACTTG-GATA
gi|84535 : GAACTCGAAATAAA-G--GAC-ACC-A----CAGATTCTGACATATCTGCTT-CATATTTG-GATAT
gi|84536 : GAACTCGACATAAA-G--GAC-ACC-A----CAGAATCTGACATATCTGCTT-CATATTTA-GATAT
gi|84537 : GAACTAGAAATAAA-G--GAC-AC--A----CAGAGTCTTCCATGTCTGCTT-CGTACTTG-GATAT
gi|84541 : GAACTCGATATAAA-T--GAC-ACC-A----CAGAATCTTACATATCTGCTT-CATATTTG-GATAT
gi|84542 : GAACTAGAACTAAA-G--GAC-ACC-A----CAGAGTTTTCCATGTCTGCTT-CGTACTTG-GATAT
gi|84543 : GAACTAGAAATAAA-G--GAC-AAC-A----CGGAGTCTTCCATGTCTGCTT-CGTACTTG-GATAT
gi|84544 : GAACTAGAAATAAA-G--GAA-GCC-A----CAGAGTCTTCCATGTCTGCTT-CGTACTTG-GATAT
gi|84545 : GAACTCAGAATAAC-A--TAC-ACC-A----CAGAGTCTTCCACATCTGCTT-CATACTTA-GATAT
gi|84546 : GAACTAGAAATAAA-G--GAC-ACC-A----CAGAGTCTTCCATGTCTGC-T-CGTACTTG-GATA
gi|84549 : GAACTAGAAATAAA-G--GGC-ACC-A----CAGAGTCTCCCATGTCTGCTT-CGTACTTG-GACAT
gi|84551 : GAACTAGAAATAAA-G--GAC-ACC-A----CAGAGCCTTCCATGTCTGCTT-CTTATTTGTGATAT
gi|84553 : GAACTCGACATAAA-G--GAC-ACC-A----CAGAATCTGACATATCTGCTT-CATATTTG-GATAT
gi|84554 : GAAGTAGAAATAAA-G--GAC-AAC-A----CAGAGTCTTCCATGTCTGCTT-CGTACTTG-GATAT
gi|84679 : AACTCGAAATAAA-G--GAC-ACC-A----CAGAATCTGACATATCTGCTT-CATATTTG-GATAT
gi|84681 : CGAACTAAAAA--------GAC-ACC-A----CAGGGTCTTCCACATTTGCTT-CGTACTTA-GATAT
gi|84682 : aactAACTAGAAATAAA-G--GAC-ACC-A----CAGAGTCTTTCATGTCTGCTT-CGTACTT--GATAT
gi|84717 : GAAATAAA-G--GAC-ACC-A----CAGAGTCTTCTATGTCTGCTT-CGTACTTG-GATAT
gi|84724 : AAATAAA-G--GAC-ACC-A----CAGAGTCTTCCATGTCTGCTT-CGTATTTG-GATAT
blockSeqCons :
originalCons : AGCGAACTAGAAATAAA-G--GAC-ACC-A----CAGAGTCTTCCATGTCTGCTT-CGTACTTG-GATAT
finalCons : AGCGAACTAGAAATAAA-G--GAC-ACC-A----CAGAGTCTTCCATGTCTGCTT-CGTACTTG-GATAT
Alignments
lowQualScore : 0 00 0 0 0000 0 0
lowQualScore : . .. . . .... . .
lowQualScore : 4 66 4 4 9999 4 4
consensus : AGCGAACTAGAAATAAA-G--GAC-ACC-A----CAGAGTCTTCCATGTCTGCTT-CGTACTTG-GATAT
Reference ( family-92 ) : AGCGAACTAGAAATAAA-G--GAC-ACC-A----CAGAGTCTTCCATGTCTGCTT-CGTACTTG-GATAT
gi|84340 : AGTGAACTAGAAATAAA-A--GAC-ACT-A----CAGAGTCTTCCATATCTGCTT-CGTAATTG-GATAT
gi|84342 : AGTGGACTAGAAATGAA-A--GAC-ACC-A----CAGAGTCTTCCATATCTGCTT-TGTATTTG-GATA
gi|84343 : AGCGAACTAGAAATAAA-G--GAC-ACC-A----CAGAGTCTTCCATGTCTGCTT-CGTACTTG-GATAT
gi|84344 : AGCGAACTAGAAATAAA-G--GAC-ACCCA----CAGAGTCTTCCATGTCTGCTT-CGTACTTG-GATAT
gi|84346 : AGCGAACTAGAGATAAA-A--GAC-ACC-A----CAGAGTCTTCCATGTCTGCTT-CGTACTTG-GATAT
gi|84348 : AGCGAACTAGAAATGAA-A--GAC-ACC-A----CAGAGTCTTCCATGTCTGCTT-CGTACTTG-GATAT
gi|84349 : AGCGAACTAGAAGTAAA-A--GAC-ACC-A----CAGAGTCTTCCATGTCTGCTT-CGTACTTG-GATAT
gi|84350 : AGTGAGTTCGAAATAAA-A--GAC-ACC-A----CAGAGTCTTCAATATCTGTTT-CGTACTTC-GATAT
gi|84351 : AGCGAACTAGAAATAAA-T--GAC-ACC-A----CAGAGTCTTCCATGTCTGTTT-CGTACTTG-GATAT
gi|84352 : AGTGAGCTTGAAATAAA-A--GAC-TCC-A----CAGCGCCTTCCACATCTGCTT-CGTACTTT-GATAT
gi|84354 : AGCGAACTAGAAATAAG-G--GAC-ACC-A----CAGAGTCTTCCATGTCTGCTT-CGTACTTG-GATAT
gi|84355 : AGCGAACCTGAAATAAA-A--GAC-ATC-A----CAGGGTCTTCCATATCTGCTT-CGTACTTG-GATA
gi|84357 : AGTGAACTCGAAATGAA-A--GAC-ACC-A----CAGGGTCCTCGACATCTGCTT-CATACTTA-GATAT
gi|84359 : AGGGAACTAGAAATAAA-G--GAC-ACC-A----CAGAGTCTTCCATGTCTGCTT-CGTACTTG-GATA
gi|84360 : GAACTAGAAATAAA-G--GAC-ACC-A----CAGAATCTTCCATGTCTGCTT-CGTACTTG-GATAT
gi|84361 : aatAGTGAACTAGAAATAAA-A--GAC-ACC-A----CAG--TCTTCCATGTCTGCTT-CGTACTTG-GATAT
gi|84362 : AGCGAACTAGAAATAAA-A--GAC-ACC-A----CTTAGTCTTCCATATCTGCTT-CGTACTTG-GATAT
gi|84364 : AGTGAACTAGAAATAAA-A--GAC-AAT-A----CAGAGTCATCCATATCTGCTT-TGTACTTA-GATAT
gi|84365 : AGTGAACTCGAGATGAA-A--GAC-ACC-A----CAAAGTCTTCCACATCTGCGT-CGTACTTT-GATAT
gi|84367 : AGTGAGCTCGAAATAAA-A--GAA-ATA-A----CAGAGTCTTCCACATCTGCTT-CGTATTTG-AATAT
gi|84368 : AGTGAACACGAAATAAA-A--GAC-ACC-A----CAGATCTTTCCATATCTGCTT-CACATTTG-GATAT
gi|84369 : AGCGAACTAGAAATAAA-G--GAC-ACC-A----TAGAGTCTTCCGTGTCTGCTT-CGTACTTG-GATAT
gi|84370 : AGCGAACTAGAAATAAA-G--GAC-ACC-A----CAGAGTCTTCCATGTCTGCTT-TGTGCTTG-GATAT
gi|84371 : GAACTCGATATAA-----GAC-ACC-A----CAGGGTCTTCCACATCTGCTT-CATATTTA-GATAT
gi|84372 : aatGAACTAGAAATAAA-A--GAC-ACC-A----CAGCGTCACCCATATCTGCTT-CGTACTTG-GATAT
gi|84373 : aatAGTGAACTCGAAATGAA-A--GAC-ACC-A--------GTCTTCCACATCTGCTT-CGTGTTTA-AATAT
gi|84374 : AGTGAACTCGAAATGAA-A--GAC-ACC-A--------GTCTTCCACATCTGCTT-CGTGTTTA-AAT
gi|84375 : AACTAGAAATAAA-A--GAC-ACC-A----CAGAGTCATCCATATCTGCTT-GGTATGTG-GATAT
gi|84376 : agttAGCGAACTAGAAGTAAA-A--GAC-AAC-A----TAGAGTCTTCCATGTCTGCTT-CGTACTTG-GATAT
gi|84378 : AGCGAACTAGAAATAAA-A--GAC-ACC-A----CATAGTCTTCTATATCTATTT-CGTACTTG-GATAT
gi|84379 : AGTAAACTCGAAATAAA-A--GAC-ACC-A----TGGAGTCTTGTACATCTGCTT-CCTACTTA-GATAT
gi|84380 : AGCAAACTAGTAATAAA-A--GAC-ACC-A----CAGAGTCTTCCATGTCTGCTT-CATACTTG-GATAT
gi|84382 : AGTGAACTCGAAATAAA-A--GAC-ATT-G----CAGAGTCTTCCACGTCTGTTT-CGTTCTTG-GATAT
gi|84384 : AGCGAACTAGAAATAAA-A--GAC-ACC-A----CGGAGTCTTCCATATCTGTTTCCGTACTTC-GATGT
gi|84385 : AGCGAACTAGAAATAAA-A--TAC-ACC-A----CAGAGTCTTCCATGTCTGCTT-TGTACTTG-TATAT
gi|84386 : AGCGAACT-GAAATAAAAG--GAC-ACC-A----CAGAGTTTCCCATGTCTGCTT-CGTACTTG-GATAT
gi|84387 : AGTGAACTCGAAATAGA-A--GAA-ACC-A----TAGAGTCTTCAACATCTGCTT-CGAACTTG-GATAT
gi|84388 : AGGGAACTAGAAATAAA-A--GAC-ACC-A----CAGAATCCTCCATGTCTGCTT-TGTTTTTG-GATAT
gi|84389 : AGTGAACTGAAAATAAA-G--GAC-ACC-A----CAAAGTCATCCGTATCTGCTT-CGTACTTC-GATAT
gi|84391 : AGTGAACTCAAAATAAA-A--GAC-ATC-A----CAGAGTCTTCCACGTCTGCTT-TGTA
gi|84392 : AGCAAACTAAAAATAAA-G--GAC-ACC-A----CAGAGTCTTTCATGTCTGCTT-CGTACTTG-GATA
gi|84393 : AGTGAACTCGAAATAGA-A--GAC-ACC-ATGCGCAGTGTCTTTCACGTCTGCTT-CGTACCTA-GATAT
gi|84394 : AGCGAACTAGAAATAAA-GTAGAC--CC-A----CAGAGTCTTCCATGTCTGCTT-CGAATTTG-GATAT
gi|84396 : AGCGAACTAGAAATAAA-G--GAC-ACC-A----CAGAGTTTTCCAAGTTTGCTT-CGTACTTG-GATAT
gi|84398 : AGTGAACTCGAAGTAAT-A--GAC-ACC-A----TAGAGTCTTCCACGTCAGTTT-CGTACTTA-GACAT
gi|84399 : AGCAAACTAGAAATAAA-A--GAC-ACC-A----CAAAGTCTTTCATGACTGCCT-CGTACTTA-GATAT
gi|84400 : AGGGAACTCGAAATAAA-A--CAC-ACC-T----CAGAGCCTTTCACGTCTGCTT-CGTACTTA-GATA
gi|84401 : AGTGAGCTAGAAATAAA-A--GAG-ACC-A----CAGAGTCAGCCATATCTGCTT-CGTACTTG-GGTAT
gi|84402 : AGTAAACTCGAAATGTA-A--GAC-ATC-A----CAGAGTCTACCACGTCTACTT-CGTACTTA-GATAT
gi|84403 : AGCGAACTAAAAATAAA-A--GAC-ACT-A----TAAAGTCTTCCATATCTCCTT-TGTATTCA-GATAT
gi|84404 : AGTGAACTCGAAATAAA-A--GAC-ACC-A----T--AGTCTTCCACATCTGCTT-----TTTA-GATAT
gi|84407 : AGCGAACTAGAAATAAA-A--GAC-ACT-A----TAGAGTCATCCATATCTGCTT-TGTATTTG-GTTA
gi|84482 : GAACTCGAAATAAA-G--GAC-ACC-A----CAGAATCTGACATATCTGCTT-CGTATTTG-GATAT
gi|84483 : tGAACTAGAAATAGA-A--GAC-ACC-A----CAGAGTCTTCCATATCTGCTT-TTTATTT
gi|84495 : tGAACTAGAAGTAAA-A--GAC-ACC-A----CAGAGTCTTCCATATCTGCTT-CGTACTTG-GATAa
gi|84496 : GAACTAGAAATAAA-G--GAC-ACC-A----CAGAGTCTTCCATGTCTGCTT-CGTACTTG-GATAT
gi|84497 : GAACTAGAAATAAA-G--GAC-ACC-A----CAGAGTCTTCCATGTCTGCTT-CGTACTTG-GATAT
gi|84501 : GAACTAGAAATAAA-G--GAC-ACC-A----CAGAGTCTTCCATGTCTGCTT-CGTACTTG-GATAT
gi|84502 : GAACTAGAAATAAA-G--GAC-ACC-A----CAGAGTCTTCCATGTCTGCTT-CGTACTTG-GATAT
gi|84503 : GAACTAGAAATAAA-G--GAC-ACC-A----CAGAGTCTTCCATGTCTGCTT-CGTACTTG-GATAT
gi|84504 : GAACTAGAAATAAA-G--GAC-ACC-A----CAGAGTCTTCCATGTCTGCTT-CGTATTTG-GATGT
gi|84505 : GAACTAGAAATAAA-G--GAC-ACC-A----CAGAGTCTTCCATGTCTGCTT-CGTACTTG-GATAT
gi|84506 : GAACTAGAAATAAA-G--GAC-ACC-A----CAGAGTCTTCCATGTCTGCTT-CGTACTTG-GATAT
gi|84510 : GAACTAGAAATAAA-A--GAC-ACC-A----CAGAGTCTTCCAAGTCTGCTT-CGTACTTG-GATAT
gi|84512 : GAACTAGAAATAAA-G--GAC-ACC-A----CAGAGTCTTCCATGTCTGCTT-CGTACTTG-GAT
gi|84513 : GAACTAGAAATAAA-G--GAC-ACC-A----CAGAGTTTTCCATGTCTGCTT-CGTACTTG-GATAT
gi|84514 : GAACTAGAAATAAA-G--GAC-ACC-A----CAGAGTTTTCCATGTCTGCTT-CGTACTTG-GATAT
gi|84515 : GAACTAGAAATAAA-G--GAC-ACC-A----CAGAGTTTTCCATGTCTGCTT-CGTACTTG-GATAT
gi|84516 : GAACTAGAAATAAA-G--GAC-ACC-A----CAGAGTTTTCCATGTCTGCTT-CGTACTTG-GATAT
gi|84517 : GAACTAGAAATAAA-G--GAC-ACC-A----CAGAGTCTTCCATGTCTGCTT-CATACTTG-GATAT
gi|84518 : GAACTAGAAATAAA-G--GAC-ACC-A----CAGAGTCTTCCATGTCTGCTT-TGTACTTG-GATAT
gi|84519 : GAACTAGAAATAAA-G---AC-ACC-A----CAGAGTCTTCCATGTCTGCTT-CGTACTTG-GATAT
gi|84520 : GAACTAGAAATAAA-A--GAT-ATC-A----CAGAGTCTTCCATGTCTGCTT-CGTACTTG-GATAT
gi|84522 : GAACTCGAAATAAA-G--GAC-ACC-A----CAGAATCTGACAGATCTGCTT-CATATTTG-GATAT
gi|84525 : GAACTAGAAATAAA-G--GAC-ACC-A----CAGAGTCGTCCATGTCTGCTT-CGTACTTG-GATAT
gi|84526 : GAACTAGAAATAAA-G--GAC-ACC-A----CAGAGTATTCCATGTCTGCTT-CGTACTTG-GATAT
gi|84527 : GAACTAGAAATAAA-G--GACCACC-A----CAGAGTCTTCCATGTCTGCTT-CGTACTTG-GATAT
gi|84528 : GAACTAGAAATAAA-G--GAC-ACC-A----CAGAGTATTCCATGTCTGCTT-CGTACTTG-GATAT
gi|84529 : GAACTCGAAATAAA-G--GAC-ACC-A----CAGAATCTGACATATCTGCTT-CATATTTG-GATAT
gi|84531 : GAACTAGAAATAAA-G--GAC-ACT-A----CATAGTCTTCCATATCTGCTT-CGTGTTTG-GATAT
gi|84533 : GAACTAGAAACAAA-G--GAC-ACC-A----CAGAGTCTTCCATGTCTGCTT-CGTACTT--GATAT
gi|84534 : GAACTAGAAATAAA-G--GAC-ACC-A----CAGAGTCTTCCAAGTCTGCTT-CGTACTTG-GATA
gi|84535 : GAACTCGAAATAAA-G--GAC-ACC-A----CAGATTCTGACATATCTGCTT-CATATTTG-GATAT
gi|84536 : GAACTCGACATAAA-G--GAC-ACC-A----CAGAATCTGACATATCTGCTT-CATATTTA-GATAT
gi|84537 : GAACTAGAAATAAA-G--GAC-AC--A----CAGAGTCTTCCATGTCTGCTT-CGTACTTG-GATAT
gi|84541 : GAACTCGATATAAA-T--GAC-ACC-A----CAGAATCTTACATATCTGCTT-CATATTTG-GATAT
gi|84542 : GAACTAGAACTAAA-G--GAC-ACC-A----CAGAGTTTTCCATGTCTGCTT-CGTACTTG-GATAT
gi|84543 : GAACTAGAAATAAA-G--GAC-AAC-A----CGGAGTCTTCCATGTCTGCTT-CGTACTTG-GATAT
gi|84544 : GAACTAGAAATAAA-G--GAA-GCC-A----CAGAGTCTTCCATGTCTGCTT-CGTACTTG-GATAT
gi|84545 : GAACTCAGAATAAC-A--TAC-ACC-A----CAGAGTCTTCCACATCTGCTT-CATACTTA-GATAT
gi|84546 : GAACTAGAAATAAA-G--GAC-ACC-A----CAGAGTCTTCCATGTCTGC-T-CGTACTTG-GATA
gi|84549 : GAACTAGAAATAAA-G--GGC-ACC-A----CAGAGTCTCCCATGTCTGCTT-CGTACTTG-GACAT
gi|84551 : GAACTAGAAATAAA-G--GAC-ACC-A----CAGAGCCTTCCATGTCTGCTT-CTTATTTGTGATAT
gi|84553 : GAACTCGACATAAA-G--GAC-ACC-A----CAGAATCTGACATATCTGCTT-CATATTTG-GATAT
gi|84554 : GAAGTAGAAATAAA-G--GAC-AAC-A----CAGAGTCTTCCATGTCTGCTT-CGTACTTG-GATAT
gi|84679 : AACTCGAAATAAA-G--GAC-ACC-A----CAGAATCTGACATATCTGCTT-CATATTTG-GATAT
gi|84681 : CGAACTAAAAA--------GAC-ACC-A----CAGGGTCTTCCACATTTGCTT-CGTACTTA-GATAT
gi|84682 : aactAACTAGAAATAAA-G--GAC-ACC-A----CAGAGTCTTTCATGTCTGCTT-CGTACTT--GATAT
gi|84717 : GAAATAAA-G--GAC-ACC-A----CAGAGTCTTCTATGTCTGCTT-CGTACTTG-GATAT
gi|84724 : AAATAAA-G--GAC-ACC-A----CAGAGTCTTCCATGTCTGCTT-CGTATTTG-GATAT