lowQualScore : 111
lowQualScore : 0 33 2 2 33 2 2 2 2 2 6 3 3 44 44 77777 88888 6 000 3 3 55 3 3
lowQualScore : . .. . . .. . . . . . . . . .. .. ..... ..... . ... . . .. . .
lowQualScore : 2 44 5 5 44 5 9 9 9 9 7 3 3 66 66 77777 33333 7 000 3 6 00 6 6
consensus : TATATGTTTAT--TCACC-AATC-ATGGGCCCTC--A-GGGGGC-ATTT-AC-A-TTTATA-A-CAG-T--AT--GATCA---C-AT-----AAA-GTAC-ATA-ATAAAACACAC-ATCG--TTT-CAA-CTTCAAG
Reference ( gi|6875 ) : TATATGTTTAT--TCACC-AATC-ATGGGCCCTC--A-GGGGGC-ATTT-AC-A-TTTATA-A-CAG-T--AT--GATTA---T-AT-----AAA-GTAC-ATA-ATAAAACACAC-ATCA--TTT-CAA-CTTCAAG
gi|6876 : TATATGTTTAT--TCACC-AATC-ATGGGCCCTC--A-GGGGGC-ATTT-AC-A-TTTATA-A-CAG-T--AT--GATTA---T-AT-----AAA-GTAC-ATA-ATAAAACACAC-ATCA--TTT-CAA-ATTCGAG
gi|6878 : TATATGTTTAT--TCACC-AATCCATGG-CCCTC--A-GGGG-C-ATTT-AC-A-TTTATA-A-CAA-T--AT--GATTA---T-AT-----AAA-GTAC-ATA-ATAAAACACAC-ATCA--TTT-CAA-CTTCAAG
gi|6879 : TAT-TGTTTAT--TCACC-AATC-ATGGG-CCTC--AGGGGGGC-ATTT-AC-A-TTTATATA-CAG-T--AT--GATTA---T-AT-----AAA-GTAC--TA-AGAAAACACAC-ATCA--TTT-CAA-CTTCAAG
gi|6877 : TATGTGTTTAT--TCACCCAATC-ATGGGCCCTC--A-GGCGGCCATTTTAC-A-TTTATA-A-CAG-T--ATATGATTA---C-AT-----AAACGTAC-ATA-ATAAAACACAC-ATCA--TTT-CAA-ATTCGAG
gi|6881 : TATATGTTTAT--TCACC-AATC-ATGGGCCCTC--A-GGGAGC-ATTT-GC-A-TTTATA-A-CA------------TA---T-GT-----AAA-G-GC-ATA-A
gi|6882 : TATTTGTTTAT--TCACC-AATC-AAGGGCCCTC----GGGGGC-ATGT-AC-A-agataacgaaca
gi|6883 : TATATGTTTATATTCACC-AACC-AAGGGCCCTG--A-GGGAGC-ATGT-AC-A-
gi|6880 : TATATATTTAT--CCACC-AATC-ATGGGCCCTC--A-Gagttaacaagcaattaactgtaacaatgaaaataaa
gi|6884 : TATATATTTAT--TCACC-AATC-AAAGGCCCTCAAA-GGGGG
gi|6885 : ATATGTTTAT--TCACC-AATC-ATGGGCCCTC--A-GGGAGC-ATTT-AC-A-TTTATA-A-CAG-T--GT--GATTA---T-AT-----AAA-GTAC-ATA-ATAAAACACAC-ATCA--TTT-CAA-CTTCAAG
gi|6886 : ATCTGTTTAT--TCACC-AATC-ATGGACCCTC--A-GGGGGC-ATTT-AC-A-TTTATA-A-CAG-T--AT--GATCA---C-AT-----AAA-GTAC-AAT-ATAAAACACAC-ATCG--TTT-CAA-CTACAAG
gi|6887 : ATCTGTTTTA--TCACC-AATC-A-GGAACCTC--A-GGGGGC-ATTT-AC-ACTTTATA-A-CAG-T--AT--GATCA---C-AT-----AAAGGTAC-AAATATAAAACACAC-ATCG--TTT-CAA-CTACAAG
gi|6888 : ATATGCTTAT--TCACC-AATC-ATGGGCT-TC--A-GGGGGC-ATTT-AC-T-TTTATA-A-CAGTT--AG--AATCA---CAAT-----AAA-GTAC---A-ATATAA-ACGC-ATCGTTTTT-CAA-CTTCAAG
gi|6889 : ATATGCTTAT--TCACC-ATTC-ATGGGCCTTC-----GGGGC-ATTT-ACTA-TTTAAA-AACAG-T--AG--AATCA---C-AT-----AAA-GTAC-A-A-ATATAAAACGC-ATCG--TTTTCAA-CTTCAAG
gi|6890 : ATATGTTTAT--TCATC-AATC-ATGGCCCTTC--A-GGGGGC-ATTT-AC-A-ATTATATA-CAG-TTAAT--GATCACAGT-ATTAAGAAGA-GTACAATA-TAAAAACACACGATAG--TTT-CAATCTTC
gi|6891 : TGT--TC-CC-AACC--TG----CTC--A-GAGGGC-ATTT-AC-A-TTTATA-A-CGG-T--AT--GATCA---C-AT-----AAA-GTAC-------AAAACACAC-ATTG--TTT-CAA-CTTCAAG
Alignments
lowQualScore : 33 2 2 33 2 2 2 2 2 6 3 3 44 44 555 3 6666 6666 6 777 3 3 77 3
lowQualScore : .. . . .. . . . . . . . . .. .. ... . .... .... . ... . . .. .
lowQualScore : 22 4 4 22 4 7 7 7 7 2 1 1 22 22 444 1 5555 5555 2 888 1 3 99 3
consensus : TATATGTTTAT--TCACC-AATC-ATGGGCCCTC--A-GGGGGC-ATTT-AC-A-TTTATA-A-CAG-T--AT--GATCA---C-A----TAA----A-GTAC-ATA-ATAAAACACAC-ATCG--TTTCAA-CTTCAAG
Reference ( family-917 ) : TATATGTTTAT--TCACC-AATC-ATGGGCCCTC--A-GGGGGC-ATTT-AC-A-TTTATA-A-CAG-T--AT--GATCA---C-A----TAA----A-GTAC-ATA-ATAAAACACAC-ATCG--TTTCAA-CTTCAAG
gi|6875 : TATATGTTTAT--TCACC-AATC-ATGGGCCCTC--A-GGGGGC-ATTT-AC-A-TTTATA-A-CAG-T--AT--GATTA---T-A----TAA----A-GTAC-ATA-ATAAAACACAC-ATCA--TTTCAA-CTTCAAG
gi|6876 : TATATGTTTAT--TCACC-AATC-ATGGGCCCTC--A-GGGGGC-ATTT-AC-A-TTTATA-A-CAG-T--AT--GATTA---T-A----TAA----A-GTAC-ATA-ATAAAACACAC-ATCA--TTTCAA-ATTCGAG
gi|6877 : TATGTGTTTAT--TCACCCAATC-ATGGGCCCTC--A-GGCGGCCATTTTAC-A-TTTATA-A-CAG-T--ATATGATTA---C-A----TAA----ACGTAC-ATA-ATAAAACACAC-ATCA--TTTCAA-ATTCGAG
gi|6878 : TATATGTTTAT--TCACC-AATCCATGG-CCCTC--A-GGGG-C-ATTT-AC-A-TTTATA-A-CAA-T--AT--GATTA---T-A----TAA----A-GTAC-ATA-ATAAAACACAC-ATCA--TTTCAA-CTTCAAG
gi|6879 : TAT-TGTTTAT--TCACC-AATC-ATGGG-CCTC--AGGGGGGC-ATTT-AC-A-TTTATATA-CAG-T--AT--GATTA---T-A----TAA----A-GTAC--TA-AGAAAACACAC-ATCA--TTTCAA-CTTCAAG
gi|6880 : TATATATTTAT--CCACC-AATC-ATGGGCCCTC--A-G
gi|6881 : TATATGTTTAT--TCACC-AATC-ATGGGCCCTC--A-GGGAGC-ATTT-GC-A-TTTATA-A-CA--T--AT--G-TAAAGGC-A----TAA----A-G----ATA-ACGAA
gi|6882 : TATTTGTTTAT--TCACC-AATC-AAGGGCCCTC----GGGGGC-ATGT-AC-A-ca
gi|6883 : TATATGTTTATATTCACC-AACC-AAGGGCCCTG--A-GGGAGC-ATGT-AC-A-
gi|6884 : TATATATTTAT--TCACC-AATC-AAAGGCCCTCAAA-GGGGGagttaacaagcaattaactgtaacaatgaaaataaa
gi|6885 : ATATGTTTAT--TCACC-AATC-ATGGGCCCTC--A-GGGAGC-ATTT-AC-A-TTTATA-A-CAG-T--GT--GATTA---T-A----TAA----A-GTAC-ATA-ATAAAACACAC-ATCA--TTTCAA-CTTCAAG
gi|6886 : ATCTGTTTAT--TCACC-AATC-ATGGACCCTC--A-GGGGGC-ATTT-AC-A-TTTATA-A-CAG-T--AT--GATCA---C-A----TAA----A-GTAC-AAT-ATAAAACACAC-ATCG--TTTCAA-CTACAAG
gi|6887 : ATCTGTTTTA--TCACC-AATC-A-GGAACCTC--A-GGGGGC-ATTT-AC-ACTTTATA-A-CAG-T--AT--GATCA---C-A----TAA----AGGTAC-AAATATAAAACACAC-ATCG--TTTCAA-CTACAAG
gi|6888 : ATATGCTTAT--TCACC-AATC-ATGGGCT-TC--A-GGGGGC-ATTT-AC-T-TTTATA-A-CAGTT--AG--AATCA---CAA----TAA----A-GTAC---A-ATATAA-ACGC-ATCGTTTTTCAA-CTTCAAG
gi|6889 : ATATGCTTAT--TCACC-ATTC-ATGGGCCTTC-----GGGGC-ATTT-ACTA-TTTAAA-AACAG-T--AG--AATCA---C-A----TAA----A-GTAC-A-A-ATATAAAACGC-ATCGT-TTTCAA-CTTCAAG
gi|6890 : ATATGTTTAT--TCATC-AATC-ATGGCCCTTC--A-GGGGGC-ATTT-AC-A-ATTATATA-CAG-TTAAT--GATCA---C-AGTATTAAGAAGA-GTACAATA-TAAAAACACACGATAG--TTTCAATCTTC
gi|6891 : TGT--TC-CC-AACC--TG----CTC--A-GAGGGC-ATTT-AC-A-TTTATA-A-CGG-T--AT--GATCA---C-A----TAA----A-GTAC-------AAAACACAC-ATTG--TTTCAA-CTTCAAG
Alignments
lowQualScore : 33 2 2 33 2 2 2 2 2 6 3 3 44 44 555 3 6666 6666 6 777 3 3 77 3
lowQualScore : .. . . .. . . . . . . . . .. .. ... . .... .... . ... . . .. .
lowQualScore : 22 4 4 22 4 7 7 7 7 2 1 1 22 22 444 1 5555 5555 2 888 1 3 99 3
consensus : TATATGTTTAT--TCACC-AATC-ATGGGCCCTC--A-GGGGGC-ATTT-AC-A-TTTATA-A-CAG-T--AT--GATCA---C-A----TAA----A-GTAC-ATA-ATAAAACACAC-ATCG--TTTCAA-CTTCAAG
Reference ( family-917 ) : TATATGTTTAT--TCACC-AATC-ATGGGCCCTC--A-GGGGGC-ATTT-AC-A-TTTATA-A-CAG-T--AT--GATCA---C-A----TAA----A-GTAC-ATA-ATAAAACACAC-ATCG--TTTCAA-CTTCAAG
gi|6875 : TATATGTTTAT--TCACC-AATC-ATGGGCCCTC--A-GGGGGC-ATTT-AC-A-TTTATA-A-CAG-T--AT--GATTA---T-A----TAA----A-GTAC-ATA-ATAAAACACAC-ATCA--TTTCAA-CTTCAAG
gi|6876 : TATATGTTTAT--TCACC-AATC-ATGGGCCCTC--A-GGGGGC-ATTT-AC-A-TTTATA-A-CAG-T--AT--GATTA---T-A----TAA----A-GTAC-ATA-ATAAAACACAC-ATCA--TTTCAA-ATTCGAG
gi|6877 : TATGTGTTTAT--TCACCCAATC-ATGGGCCCTC--A-GGCGGCCATTTTAC-A-TTTATA-A-CAG-T--ATATGATTA---C-A----TAA----ACGTAC-ATA-ATAAAACACAC-ATCA--TTTCAA-ATTCGAG
gi|6878 : TATATGTTTAT--TCACC-AATCCATGG-CCCTC--A-GGGG-C-ATTT-AC-A-TTTATA-A-CAA-T--AT--GATTA---T-A----TAA----A-GTAC-ATA-ATAAAACACAC-ATCA--TTTCAA-CTTCAAG
gi|6879 : TAT-TGTTTAT--TCACC-AATC-ATGGG-CCTC--AGGGGGGC-ATTT-AC-A-TTTATATA-CAG-T--AT--GATTA---T-A----TAA----A-GTAC--TA-AGAAAACACAC-ATCA--TTTCAA-CTTCAAG
gi|6880 : TATATATTTAT--CCACC-AATC-ATGGGCCCTC--A-G
gi|6881 : TATATGTTTAT--TCACC-AATC-ATGGGCCCTC--A-GGGAGC-ATTT-GC-A-TTTATA-A-CA--T--AT--G-TAAAGGC-A----TAA----A-G----ATA-ACGAA
gi|6882 : TATTTGTTTAT--TCACC-AATC-AAGGGCCCTC----GGGGGC-ATGT-AC-A-ca
gi|6883 : TATATGTTTATATTCACC-AACC-AAGGGCCCTG--A-GGGAGC-ATGT-AC-A-
gi|6884 : TATATATTTAT--TCACC-AATC-AAAGGCCCTCAAA-GGGGGagttaacaagcaattaactgtaacaatgaaaataaa
gi|6885 : ATATGTTTAT--TCACC-AATC-ATGGGCCCTC--A-GGGAGC-ATTT-AC-A-TTTATA-A-CAG-T--GT--GATTA---T-A----TAA----A-GTAC-ATA-ATAAAACACAC-ATCA--TTTCAA-CTTCAAG
gi|6886 : ATCTGTTTAT--TCACC-AATC-ATGGACCCTC--A-GGGGGC-ATTT-AC-A-TTTATA-A-CAG-T--AT--GATCA---C-A----TAA----A-GTAC-AAT-ATAAAACACAC-ATCG--TTTCAA-CTACAAG
gi|6887 : ATCTGTTTTA--TCACC-AATC-A-GGAACCTC--A-GGGGGC-ATTT-AC-ACTTTATA-A-CAG-T--AT--GATCA---C-A----TAA----AGGTAC-AAATATAAAACACAC-ATCG--TTTCAA-CTACAAG
gi|6888 : ATATGCTTAT--TCACC-AATC-ATGGGCT-TC--A-GGGGGC-ATTT-AC-T-TTTATA-A-CAGTT--AG--AATCA---CAA----TAA----A-GTAC---A-ATATAA-ACGC-ATCGTTTTTCAA-CTTCAAG
gi|6889 : ATATGCTTAT--TCACC-ATTC-ATGGGCCTTC-----GGGGC-ATTT-ACTA-TTTAAA-AACAG-T--AG--AATCA---C-A----TAA----A-GTAC-A-A-ATATAAAACGC-ATCGT-TTTCAA-CTTCAAG
gi|6890 : ATATGTTTAT--TCATC-AATC-ATGGCCCTTC--A-GGGGGC-ATTT-AC-A-ATTATATA-CAG-TTAAT--GATCA---C-AGTATTAAGAAGA-GTACAATA-TAAAAACACACGATAG--TTTCAATCTTC
gi|6891 : TGT--TC-CC-AACC--TG----CTC--A-GAGGGC-ATTT-AC-A-TTTATA-A-CGG-T--AT--GATCA---C-A----TAA----A-GTAC-------AAAACACAC-ATTG--TTTCAA-CTTCAAG
blockSeqs : AT C C AA G C T T C T A T TA AT AGG A GTAT GAAG C AAT T G TT T
blockSeqs : . . . . . . . . . T . . . . . . . . G AT . . T .
blockSeqs : . . . . . . . . . . . . . . . . . . . AT . . . .
blockSeqs : . . . . . . . . . . . . . . . . . . . AT . . . .
blockSeqs : . . . . . . . . . . . . . . . . . . . AT . . . .
blockSeqs : . . . . . . . . . . . . . . . . . . . AT . . . .
blockSeqs : . . . . . . . . . . . . . . . . . . . AA . . . .
blockSeqs : . . . . . . . . . . . . . . . . . . . AA . . . .
blockSeqs : . . . . . . . . . . . . . . . . . . . T . . . .
blockSeqs : . . . . . . . . . . . . . . . . . . . A . . . .
blockSeqs : . . . . . . . . . . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . .
blockSeqs : . . . . . . . . .
blockSeqs : . . . . .
blockSeqs : . . . . .
blockSeqCons :
originalCons : TATATGTTTAT--TCACC-AATC-ATGGGCCCTC--A-GGGGGC-ATTT-AC-A-TTTATA-A-CAG-T--AT--GATCA---C-A----TAA----A-GTAC-ATA-ATAAAACACAC-ATCG--TTTCAA-CTTCAAG
finalCons : TATATGTTTAT--TCACC-AATC-ATGGGCCCTC--A-GGGGGC-ATTT-AC-A-TTTATA-A-CAG-T--AT--GATCA---C-A----TAA----A-GTAC-ATA-ATAAAACACAC-ATCG--TTTCAA-CTTCAAG
Alignments
lowQualScore : 33 2 2 33 2 2 2 2 2 6 3 3 44 44 555 3 6666 6666 6 777 3 3 77 3
lowQualScore : .. . . .. . . . . . . . . .. .. ... . .... .... . ... . . .. .
lowQualScore : 22 4 4 22 4 7 7 7 7 2 1 1 22 22 444 1 5555 5555 2 888 1 3 99 3
consensus : TATATGTTTAT--TCACC-AATC-ATGGGCCCTC--A-GGGGGC-ATTT-AC-A-TTTATA-A-CAG-T--AT--GATCA---C-A----TAA----A-GTAC-ATA-ATAAAACACAC-ATCG--TTTCAA-CTTCAAG
Reference ( family-917 ) : TATATGTTTAT--TCACC-AATC-ATGGGCCCTC--A-GGGGGC-ATTT-AC-A-TTTATA-A-CAG-T--AT--GATCA---C-A----TAA----A-GTAC-ATA-ATAAAACACAC-ATCG--TTTCAA-CTTCAAG
gi|6875 : TATATGTTTAT--TCACC-AATC-ATGGGCCCTC--A-GGGGGC-ATTT-AC-A-TTTATA-A-CAG-T--AT--GATTA---T-A----TAA----A-GTAC-ATA-ATAAAACACAC-ATCA--TTTCAA-CTTCAAG
gi|6876 : TATATGTTTAT--TCACC-AATC-ATGGGCCCTC--A-GGGGGC-ATTT-AC-A-TTTATA-A-CAG-T--AT--GATTA---T-A----TAA----A-GTAC-ATA-ATAAAACACAC-ATCA--TTTCAA-ATTCGAG
gi|6877 : TATGTGTTTAT--TCACCCAATC-ATGGGCCCTC--A-GGCGGCCATTTTAC-A-TTTATA-A-CAG-T--ATATGATTA---C-A----TAA----ACGTAC-ATA-ATAAAACACAC-ATCA--TTTCAA-ATTCGAG
gi|6878 : TATATGTTTAT--TCACC-AATCCATGG-CCCTC--A-GGGG-C-ATTT-AC-A-TTTATA-A-CAA-T--AT--GATTA---T-A----TAA----A-GTAC-ATA-ATAAAACACAC-ATCA--TTTCAA-CTTCAAG
gi|6879 : TAT-TGTTTAT--TCACC-AATC-ATGGG-CCTC--AGGGGGGC-ATTT-AC-A-TTTATATA-CAG-T--AT--GATTA---T-A----TAA----A-GTAC--TA-AGAAAACACAC-ATCA--TTTCAA-CTTCAAG
gi|6880 : TATATATTTAT--CCACC-AATC-ATGGGCCCTC--A-G
gi|6881 : TATATGTTTAT--TCACC-AATC-ATGGGCCCTC--A-GGGAGC-ATTT-GC-A-TTTATA-A-CA--T--AT--G-TAAAGGC-A----TAA----A-G----ATA-ACGAA
gi|6882 : TATTTGTTTAT--TCACC-AATC-AAGGGCCCTC----GGGGGC-ATGT-AC-A-ca
gi|6883 : TATATGTTTATATTCACC-AACC-AAGGGCCCTG--A-GGGAGC-ATGT-AC-A-
gi|6884 : TATATATTTAT--TCACC-AATC-AAAGGCCCTCAAA-GGGGGagttaacaagcaattaactgtaacaatgaaaataaa
gi|6885 : ATATGTTTAT--TCACC-AATC-ATGGGCCCTC--A-GGGAGC-ATTT-AC-A-TTTATA-A-CAG-T--GT--GATTA---T-A----TAA----A-GTAC-ATA-ATAAAACACAC-ATCA--TTTCAA-CTTCAAG
gi|6886 : ATCTGTTTAT--TCACC-AATC-ATGGACCCTC--A-GGGGGC-ATTT-AC-A-TTTATA-A-CAG-T--AT--GATCA---C-A----TAA----A-GTAC-AAT-ATAAAACACAC-ATCG--TTTCAA-CTACAAG
gi|6887 : ATCTGTTTTA--TCACC-AATC-A-GGAACCTC--A-GGGGGC-ATTT-AC-ACTTTATA-A-CAG-T--AT--GATCA---C-A----TAA----AGGTAC-AAATATAAAACACAC-ATCG--TTTCAA-CTACAAG
gi|6888 : ATATGCTTAT--TCACC-AATC-ATGGGCT-TC--A-GGGGGC-ATTT-AC-T-TTTATA-A-CAGTT--AG--AATCA---CAA----TAA----A-GTAC---A-ATATAA-ACGC-ATCGTTTTTCAA-CTTCAAG
gi|6889 : ATATGCTTAT--TCACC-ATTC-ATGGGCCTTC-----GGGGC-ATTT-ACTA-TTTAAA-AACAG-T--AG--AATCA---C-A----TAA----A-GTAC-A-A-ATATAAAACGC-ATCGT-TTTCAA-CTTCAAG
gi|6890 : ATATGTTTAT--TCATC-AATC-ATGGCCCTTC--A-GGGGGC-ATTT-AC-A-ATTATATA-CAG-TTAAT--GATCA---C-AGTATTAAGAAGA-GTACAATA-TAAAAACACACGATAG--TTTCAATCTTC
gi|6891 : TGT--TC-CC-AACC--TG----CTC--A-GAGGGC-ATTT-AC-A-TTTATA-A-CGG-T--AT--GATCA---C-A----TAA----A-GTAC-------AAAACACAC-ATTG--TTTCAA-CTTCAAG